lowQualScore : 1 44444 11 2 11
lowQualScore : 6 7 11111 55 6 0 555 33 0 555 44 33 5 2 2 33 2 2 77777 22
lowQualScore : . . ..... .. . . ... .. . ... .. .. . . . .. . . ..... ..
lowQualScore : 0 0 55555 88 7 1 000 99 9 000 33 99 7 9 9 99 9 9 11111 55
consensus : GAATAAATGTTGTA--TAAT--AA-TTAAGAT---T--TTCT---TCG-C--TCAA-C-TTTCC--TTTT-T-TC-----CCC--AGAGTTC
Reference ( gi|5 ) : GGATTAATGTTGT---TAAT--AA-TTAAGAT---T--TCCT---TCG-C--T-AA-C-TTTCC--TTTT-T-TC-----CCC--AGAGTTC
gi|4 : GAATAAATGTTGC----AAT--AAATTAAAAT---T--TCCGGCATCA-C--TCAA-CCTTTCC--TTTA-T-TC-----CCC--AGGGCT
gi|2 : actAATGTTGTAA-TAAT--AA-TCAAGATAAAT--TCCT---TCA-CATC-AA-C-TTTCT--TTTT-T-TTTTTTTCCC--AGAGTTC
gi|6 : tggagtaaAATGTTGTACATAATG-AA-TTAAGAT---T--GACT---TCA-C--TCAA-C-TTTCC--TTTT-T-TC-----CTC--t
gi|7 : taAATGTTG----TAAA--AA-TT-AGAT---T--TTCA---TCA-C--T-CATC-TTTCCCTTTTT-T-TT-----CAC--AGGGTTCaga
gi|8 : GTTGT----GAT--AA-TTAAG-T---T--TTCA---TCA-C--T-TA-C--TTCC--TGTT-T-TT-----TCC--AGGGCTCtg
gi|9 : TTGTACATAATCAAA-TTA-GAT---TCTTTCT---TCA-C--TCAA-C-TTTCC--TTTT-T-TC-----CTC--tgt
gi|14 : TGAGAT---T--TCCT---TCGCC--C-AA-C-TTTCC--TTTT-TATC-----CCT--AAAGTTCg
gi|16 : AGAT---T--TCCT---TCG-C--CCAA-C-TTTCC--TTTT-A-TC-----CCT--AAAGTTCt
gi|17 : gGAT---T--TCCT---TCG-C--TCAA-C-TTTCC--TTTTTT-TC-----CCC--AGAGTTCt
gi|23 : GAT---T--TTCT---TCA-T--C-AA-C-TTTCC--TTTT-T-TT-----CCTCAAGAGTt
gi|22 : AT---T--TTCT---TCG-C--TCAA-C-TTTCT--TTTT-T-TC-----CCC--AGAGTTC
gi|21 : AT---T--TTCT---TCA-C--TCAA-C-TTTCC--TTTT-T-TC-----CTCA-AGAGTCCt
gi|20 : AT---T--TTCT---TCA-C--TCAA-C-TTTCC--TTTT-T-TC-----CTCA-AGAGTCC
gi|24 : AT---T--TTCT---TCA-C--TCAA-C-TTTCT--TTTT-T-TC-----CTCA-AGAG
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TTACTGGTATTAAATTGTTTTTTGTAATAATAAATTAGTTTTCATCACTTATCTTATACTTTATCTTCTTAACCAGGGCTCTGCC
Unaligned ( gi|3 ): CTGGATAAATGTTGTAATAAATTACATGCAATATTTTCATCACTCATCTTTTCTTCATCCCCAGGGCTCTGC
Unaligned ( gi|10 ): AAATACTGGATAAATGTAATAAAATAAGATTTTCATCACTCAACCCCCCC
Unaligned ( gi|11 ): AGATTTTCATCAACTCAACTTTCCTTCTTTTTTTTCGCAGGGCTCTG
Unaligned ( gi|12 ): AGATTTTCATGTCACTTCAACTTTCCCTTTTTTTTTTTCCGGGGCT
Unaligned ( gi|13 ): GAGTTTTCATCACTCAACTTTCCTTTCTTTTTTTCGCAGGGCTCT
Unaligned ( gi|15 ): AGATTTTCATCACTTCTACTTTCCTTCTTTTTTTTTCACAGGGC
Unaligned ( gi|18 ): GATTTTCATCACTCAACTTTTCTTCGTCCCCAGGGCTCTG
Unaligned ( gi|19 ): GATTTTCATCACTCAACTTTTCTTCTTACCCAGGGCTCTG
Alignments
lowQualScore : 333333333333
lowQualScore : 2 444444444444 4 8 333 22 5555 44 1 1 4444 8888 2 55555 88
lowQualScore : . ............ . . ... .. .... .. . . .... .... . ..... ..
lowQualScore : 2 111111111111 4 0 333 66 4444 11 9 9 0000 6666 0 00000 88
consensus : GGATAAATGTTGT-A--TAA--T--A-AT-TAAGAT---T--TTCN---TCA-C-TCAAC-TTTC----C----TTTTT-TC-----CCC--AGGGTTC
Reference ( family-5973 ) : GAATAAATGTTGT-A--TAA--T--A-AT-TAAGAT---T--TTCT---TCG-C-TCAAC-TTTC----C----TTTTT-TC-----CCC--AGAGTTC
gi|10 : GGATAAATGT--------AA--T--A-AAATAAGAT---T--TTCA---TCA-C-TCAAC-CCCC----C----
gi|11 : aaatactAGAT---T--TTCA---TCAAC-TCAAC-TTTC----CTTCTTTTTT-TT-----CGC--AGGGCTCc
gi|13 : T---T--TTCA---TCA-C-TCAAC-TTTCCTTTC----TTTTT-TT-----CGC--AGGGCTCtg
gi|14 : gag-TGAGAT---T--TCCT---TCG-C-CCAAC-TTTC----C----TTTTTATC-----CCT--AAAGTTCt
gi|16 : AGAT---T--TCCT---TCG-C-CCAAC-TTTC----C----TTTTA-TC-----CCT--AAAGTTCt
gi|17 : gGAT---T--TCCT---TCG-C-TCAAC-TTTC----CT---TTTTT-TC-----CCC--AGAGTTCt
gi|18 : GAT---T--TTCA---TCA-C-TCAAC-TTTT----C-----TTCG-TC-----CCC--AGGGCTCt
gi|19 : GAT---T--TTCA---TCA-C-TCAAC-TTTT----C-----TTCT-TA-----CCC--AGGGCTCtg
gi|2 : AAATGTTGT-AA-TAA--T--A-AT-CAAGATAAAT--TCCT---TCA-CATCAAC-TTTC----T----TTTTT-TTTTTTTCCC--AGAGTTCtg
gi|20 : tggagtaAT---T--TTCT---TCA-C-TCAAC-TTTC----C----TTTTT-TC-----CTCA-AGAGTCCt
gi|21 : AT---T--TTCT---TCA-C-TCAAC-TTTC----C----TTTTT-TC-----CTCA-AGAGTCC
gi|22 : AT---T--TTCT---TCG-C-TCAAC-TTTC----T----TTTTT-TC-----CCC--AGAGTTC
gi|23 : GAT---T--TTCT---TCA---TCAAC-TTTC----C----TTTTT-TT-----CCTCAAGAGTt
gi|24 : AT---T--TTCT---TCA-C-TCAAC-TTTC----T----TTTTT-TC-----CTCA-AGAG
gi|3 : GGATAAATGTTGTAA--TAAATT--ACATGCAATAT---T--TTCA---TCA-C-TCATC-TTTT----C-----TTCA-TC-----CCC--AGGGCTCcc
gi|4 : ctGAATAAATGTTGC-AA-TAA-------AT-TAAAAT---T--TCCGGCATCA-C-TCAACCTTTC----C----TTTAT-TC-----CCC--AGGGCTtgc
gi|5 : actGGATTAATGTTGT----TAA--T--A-AT-TAAGAT---T--TCCT---TCG-C-T-AAC-TTTC----C----TTTTT-TC-----CCC--AGAGTTC
gi|6 : TAAATGTTGT-ACATAA--TG-A-AT-TAAGAT---T--GACT---TCA-C-TCAAC-TTTC----C----TTTTT-TC-----CTC--
gi|7 : AATGTTGT-A---AA-----A-AT-TA-GAT---T--TTCA---TCA-C-TCATC-TTTC----CCT--TTTTT-TT-----CAC--AGGGTTCaga
gi|8 : GTTGT-G----A--T--A-AT-TAAG-T---T--TTCA---TCA-C-TTA---CTTC----C----TGTTT-TT-----TCC--AGGGCTCtg
gi|9 : TTGT-ACATAA--TCAA-AT-TA-GAT---TCTTTCT---TCA-C-TCAAC-TTTC----C----TTTTT-TC-----CTC--tgt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTACTGGTATTAAATTGTTTTTTGTAATAATAAATTAGTTTTCATCACTTATCTTATACTTTATCTTCTTAACCAGGGCTCTGCC
Unaligned ( gi|12 ): AGATTTTCATGTCACTTCAACTTTCCCTTTTTTTTTTTCCGGGGCT
Unaligned ( gi|15 ): AGATTTTCATCACTTCTACTTTCCTTCTTTTTTTTTCACAGGGC
Alignments
lowQualScore : 33333333333 11111111111
lowQualScore : 44444444444 4 8 333 22 4444 22 1 1 3 1 88888888888 3
lowQualScore : ........... . . ... .. .... .. . . . . ........... .
lowQualScore : 11111111111 4 0 000 44 0000 44 7 7 5 7 44444444444 6
consensus : GGATAAATGTTGTA--TAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CAAC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
Reference ( family-5973 ) : GGATAAATGTTGTA--TAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CAAC-TTTC-----C-----TTTTT-TCCCCAGGGTTC
gi|10 : GGATAAATGT-------AA--T--A-AAATAAGAT---T--TTCA---T--CA-C-T-CAAC-CCCC-----C-----
gi|11 : aaatactAGAT---T--TTCA---T--CAAC-T-CAAC-TTTC-----CTTCT-TTTTT-TTCGCAGGGCTCc
gi|12 : AGAT---T--TTCA---TGTCA-C-TTCAAC-TTTC-----CCTTT-TTTTT-TTTCCGGGGCTtg
gi|13 : T---T--TTCA---T--CA-C-T-CAAC-TTTCCTTT-C-----TTTTT-TTCGCAGGGCTC
gi|14 : gag-TGAGAT---T--TCCT---T--CG-C-C-CAAC-TTTC-----C-----TTTTTATCCCTAAAGTTCt
gi|15 : AGAT---T--TTCA---T--CA-C-TTCTAC-TTTC-----CTTCTTTTTTT-TTCACAGGGt
gi|16 : AGAT---T--TCCT---T--CG-C-C-CAAC-TTTC-----C-----TTTTA-TCCCTAAAGTTCc
gi|17 : gGAT---T--TCCT---T--CG-C-T-CAAC-TTTC-----CT----TTTTT-TCCCCAGAGTTCt
gi|18 : GAT---T--TTCA---T--CA-C-T-CAAC-TTTT-----C------TTCG-TCCCCAGGGCTCt
gi|19 : GAT---T--TTCA---T--CA-C-T-CAAC-TTTT-----C------TTCT-TACCCAGGGCTCtg
gi|2 : AAATGTTGTAA-TAA--T--A-AT-CAAGATAAAT--TCCT---T--CA-CAT-CAAC-TTTCTTTTTT-----TTTTT-TTCCCAGAGTTCtg
gi|20 : tggagtaAT---T--TTCT---T--CA-C-T-CAAC-TTTC-----C-----TTTTT-TCCTCAAGt
gi|21 : AT---T--TTCT---T--CA-C-T-CAAC-TTTC-----C-----TTTTT-TCCTCAAGagtcc
gi|22 : AT---T--TTCT---T--CG-C-T-CAAC-TTTC-----T-----TTTTT-TCCCCAGAGTTCagtcc
gi|23 : GAT---T--TTCT---T--CA---T-CAAC-TTTC-----C-----TTTTTTTCCTCAAGt
gi|24 : AT---T--TTCT---T--CA-C-T-CAAC-TTTC-----T-----TTTTT-TCCTCAAGagt
gi|3 : GGATAAATGTTGTAA-TAAATT--ACATGCAATAT---T--TTCA---T--CA-C-T-CATC-TTTT-----C------TTCA-TCCCCAGGGCTCagcc
gi|4 : ctGAATAAATGTTGCAA-TAA-------AT-TAAAAT---T--TCCGGCAT--CA-C-T-CAACCTTTC-----C-----TTTAT-TCCCCAGGGCTtgc
gi|5 : actGGATTAATGTTGT---TAA--T--A-AT-TAAGAT---T--TCCT---T--CG-C-T--AAC-TTTC-----C-----TTTTT-TCCCCAGAGTTC
gi|6 : TAAATGTTGTACATAA--TG-A-AT-TAAGAT---T--GACT---T--CA-C-T-CAAC-TTTC-----C-----TTTTT-TCCTCAAG
gi|7 : AATGTTGTA---AA-----A-AT-TA-GAT---T--TTCA---T--CA-C-T-CATC-TTTC-----CCT---TTTTT-TTCACAGGGTTCa
gi|8 : GTTGTG----A--T--A-AT-TAAG-T---T--TTCA---T--CA-C-T-TA-C-TTCC-----TG----TTTTT-T--CCAGGGCTCtg
gi|9 : TTGTACATAA--TCAA-AT-TA-GAT---TCTTTCT---T--CA-C-T-CAAC-TTTC-----C-----TTTTT-TCCTCtgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTACTGGTATTAAATTGTTTTTTGTAATAATAAATTAGTTTTCATCACTTATCTTATACTTTATCTTCTTAACCAGGGCTCTGCC
Alignments
lowQualScore : 3333333333 11111111111
lowQualScore : 0000000000 4 7 222 22 3333 22 1 1 3 444444 1 55555555555 3
lowQualScore : .......... . . ... .. .... .. . . . ...... . ........... .
lowQualScore : 4444444444 0 3 999 33 9999 33 7 7 3 888888 7 66666666666 5
consensus : GGATAAATGTTGTAA-TAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
Reference ( family-5973 ) : GGATAAATGTTGTA--TAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
gi|1 : TTGTAA-TAA--T--A-AA-TTAG-T---T--TTCA---T--CA-C-T-TATCTTATAC-TTTA-----T-----CTTCT-TAACCAGGGCTC
gi|10 : ttactggtattaaattgttttGGATAAATGT-------AA--T--A-AAATAAGAT---T--TTCA---T--CA-C-T-CA------AC-CCCC-----C-----tgcc
gi|11 : aaatactAGAT---T--TTCA---T--CAAC-T-CA------AC-TTTC-----CTTCT-TTTTT-TTCGCAGGGCTCc
gi|12 : AGAT---T--TTCA---TGTCA-C-TTCA------AC-TTTC-----CCTTT-TTTTT-TTTCCGGGGCTtg
gi|13 : T---T--TTCA---T--CA-C-T-CA------AC-TTTCCTTT-C-----TTTTT-TTCGCAGGGCTC
gi|14 : gag-TGAGAT---T--TCCT---T--CG-C-C-CA------AC-TTTC-----C-----TTTTTATCCCTAAAGTTCt
gi|15 : AGAT---T--TTCA---T--CA-C-TTCT------AC-TTTC-----CTTCTTTTTTT-TTCACAGGGCt
gi|16 : AGAT---T--TCCT---T--CG-C-C-CA------AC-TTTC-----C-----TTTTA-TCCCTAAAGTTC
gi|17 : gGAT---T--TCCT---T--CG-C-T-CA------AC-TTTC-----CT----TTTTT-TCCCCAGAGTTCt
gi|18 : GAT---T--TTCA---T--CA-C-T-CA------AC-TTTT-----C------TTCG-TCCCCAGGGCTCt
gi|19 : GAT---T--TTCA---T--CA-C-T-CA------AC-TTTT-----C------TTCT-TACCCAGGGCTCtg
gi|2 : AAATGTTGTAA-TAA--T--A-AT-CAAGATAAAT--TCCT---T--CA-CAT-CA------AC-TTTCTTTTTT-----TTTTT-TTCCCAGAGTTCtg
gi|20 : tggagtaAT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAGt
gi|21 : AT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAGagtcc
gi|22 : AT---T--TTCT---T--CG-C-T-CA------AC-TTTC-----T-----TTTTT-TCCCCAGAGTTCagtcc
gi|23 : GAT---T--TTCT---T--CA---T-CA------AC-TTTC-----C-----TTTTTTTCCTCAAGt
gi|24 : AT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----T-----TTTTT-TCCTCAAGagt
gi|3 : GGATAAATGTTGTAA-TAAATT--ACATGCAATAT---T--TTCA---T--CA-C-T-CA------TC-TTTT-----C------TTCA-TCCCCAGGGCTCagcc
gi|4 : ctGAATAAATGTTGCAA-TAA-------AT-TAAAAT---T--TCCGGCAT--CA-C-T-CA------ACCTTTC-----C-----TTTAT-TCCCCAGGGCTtgc
gi|5 : actGGATTAATGTTGT---TAA--T--A-AT-TAAGAT---T--TCCT---T--CG-C-T--A------AC-TTTC-----C-----TTTTT-TCCCCAGAGTTC
gi|6 : TAAATGTTGTACATAA--TG-A-AT-TAAGAT---T--GACT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAG
gi|7 : AATGTTGTA---AA-----A-AT-TA-GAT---T--TTCA---T--CA-C-T-CA------TC-TTTC-----CCT---TTTTT-TTCACAGGGTTCa
gi|8 : GTTGTG----A--T--A-AT-TAAG-T---T--TTCA---T--CA-C-T-TA---------CTTC-----C-----TGTTT-TTTCCAGGGCTCtg
gi|9 : TTGTACATAA--TCAA-AT-TA-GAT---TCTTTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCtgt
Alignments
lowQualScore : 2222222 11111111111
lowQualScore : 8 3333333 3 222 22 3333 22 1 1 3 444444 1 55555555555 3
lowQualScore : . ....... . ... .. .... .. . . . ...... . ........... .
lowQualScore : 0 0000000 6 999 33 9999 33 7 7 3 888888 7 66666666666 5
consensus : GGATAAATGTTGTA-ATAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
Reference ( family-5973 ) : GGATAAATGTTGTA-ATAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
gi|1 : TTGTA-ATAA--T--A-AA-TTAG-T---T--TTCA---T--CA-C-T-TATCTTATAC-TTTA-----T-----CTTCT-TAACCAGGGCTC
gi|10 : ttactggtattaaattgttttGGATAAATGT---A-ATAA-----A-AT--AAGAT---T--TTCA---T--CA-C-T-CA------AC-CCCC-----C-----tgcc
gi|11 : aaatactAGAT---T--TTCA---T--CAAC-T-CA------AC-TTTC-----CTTCT-TTTTT-TTCGCAGGGCTCc
gi|12 : AGAT---T--TTCA---TGTCA-C-TTCA------AC-TTTC-----CCTTT-TTTTT-TTTCCGGGGCTtg
gi|13 : T---T--TTCA---T--CA-C-T-CA------AC-TTTCCTTT-C-----TTTTT-TTCGCAGGGCTC
gi|14 : gag-TGAGAT---T--TCCT---T--CG-C-C-CA------AC-TTTC-----C-----TTTTTATCCCTAAAGTTCt
gi|15 : AGAT---T--TTCA---T--CA-C-TTCT------AC-TTTC-----CTTCTTTTTTT-TTCACAGGGCt
gi|16 : AGAT---T--TCCT---T--CG-C-C-CA------AC-TTTC-----C-----TTTTA-TCCCTAAAGTTC
gi|17 : gGAT---T--TCCT---T--CG-C-T-CA------AC-TTTC-----CT----TTTTT-TCCCCAGAGTTCt
gi|18 : GAT---T--TTCA---T--CA-C-T-CA------AC-TTTT-----C------TTCG-TCCCCAGGGCTCt
gi|19 : GAT---T--TTCA---T--CA-C-T-CA------AC-TTTT-----C------TTCT-TACCCAGGGCTCtg
gi|2 : AAATGTTGTA-ATAA--T--A-AT-CAAGATAAAT--TCCT---T--CA-CAT-CA------AC-TTTCTTTTTT-----TTTTT-TTCCCAGAGTTCtg
gi|20 : tggagtaAT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAGt
gi|21 : AT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAGagtcc
gi|22 : AT---T--TTCT---T--CG-C-T-CA------AC-TTTC-----T-----TTTTT-TCCCCAGAGTTCagtcc
gi|23 : GAT---T--TTCT---T--CA---T-CA------AC-TTTC-----C-----TTTTTTTCCTCAAGt
gi|24 : AT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----T-----TTTTT-TCCTCAAGagt
gi|3 : GGATAAATGTTGTA-ATAAATT--ACATGCAATAT---T--TTCA---T--CA-C-T-CA------TC-TTTT-----C------TTCA-TCCCCAGGGCTCagcc
gi|4 : ctGAATAAATGTTGCA-ATAA-------AT-TAAAAT---T--TCCGGCAT--CA-C-T-CA------ACCTTTC-----C-----TTTAT-TCCCCAGGGCTtgc
gi|5 : actGGATTAATGTTGT---TAA--T--A-AT-TAAGAT---T--TCCT---T--CG-C-T--A------AC-TTTC-----C-----TTTTT-TCCCCAGAGTTC
gi|6 : TAAATGTTGTACATAA--TG-A-AT-TAAGAT---T--GACT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAG
gi|7 : AATGTTGTA-A--A-----A-AT-TA-GAT---T--TTCA---T--CA-C-T-CA------TC-TTTC-----CCT---TTTTT-TTCACAGGGTTCa
gi|8 : GTTGTG-ATAA--T-------TAAG-T---T--TTCA---T--CA-C-T-TA---------CTTC-----C-----TGTTT-TTTCCAGGGCTCtg
gi|9 : TTGTACATAA--TCAA-AT-TA-GAT---TCTTTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCtgt
Alignments
lowQualScore : 2222222 11111111111
lowQualScore : 8 3333333 3 222 22 3333 22 1 1 3 444444 1 55555555555 3
lowQualScore : . ....... . ... .. .... .. . . . ...... . ........... .
lowQualScore : 0 0000000 6 999 33 9999 33 7 7 3 888888 7 66666666666 5
consensus : GGATAAATGTTGTA-ATAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
Reference ( family-5973 ) : GGATAAATGTTGTA-ATAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
gi|1 : TTGTA-ATAA--T--A-AA-TTAG-T---T--TTCA---T--CA-C-T-TATCTTATAC-TTTA-----T-----CTTCT-TAACCAGGGCTC
gi|10 : ttactggtattaaattgttttGGATAAATGT---A-ATAA-----A-AT--AAGAT---T--TTCA---T--CA-C-T-CA------AC-CCCC-----C-----tgcc
gi|11 : aaatactAGAT---T--TTCA---T--CAAC-T-CA------AC-TTTC-----CTTCT-TTTTT-TTCGCAGGGCTCc
gi|12 : AGAT---T--TTCA---TGTCA-C-TTCA------AC-TTTC-----CCTTT-TTTTT-TTTCCGGGGCTtg
gi|13 : T---T--TTCA---T--CA-C-T-CA------AC-TTTCCTTT-C-----TTTTT-TTCGCAGGGCTC
gi|14 : gag-TGAGAT---T--TCCT---T--CG-C-C-CA------AC-TTTC-----C-----TTTTTATCCCTAAAGTTCt
gi|15 : AGAT---T--TTCA---T--CA-C-TTCT------AC-TTTC-----CTTCTTTTTTT-TTCACAGGGCt
gi|16 : AGAT---T--TCCT---T--CG-C-C-CA------AC-TTTC-----C-----TTTTA-TCCCTAAAGTTC
gi|17 : gGAT---T--TCCT---T--CG-C-T-CA------AC-TTTC-----CT----TTTTT-TCCCCAGAGTTCt
gi|18 : GAT---T--TTCA---T--CA-C-T-CA------AC-TTTT-----C------TTCG-TCCCCAGGGCTCt
gi|19 : GAT---T--TTCA---T--CA-C-T-CA------AC-TTTT-----C------TTCT-TACCCAGGGCTCtg
gi|2 : AAATGTTGTA-ATAA--T--A-AT-CAAGATAAAT--TCCT---T--CA-CAT-CA------AC-TTTCTTTTTT-----TTTTT-TTCCCAGAGTTCtg
gi|20 : tggagtaAT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAGt
gi|21 : AT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAGagtcc
gi|22 : AT---T--TTCT---T--CG-C-T-CA------AC-TTTC-----T-----TTTTT-TCCCCAGAGTTCagtcc
gi|23 : GAT---T--TTCT---T--CA---T-CA------AC-TTTC-----C-----TTTTTTTCCTCAAGt
gi|24 : AT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----T-----TTTTT-TCCTCAAGagt
gi|3 : GGATAAATGTTGTA-ATAAATT--ACATGCAATAT---T--TTCA---T--CA-C-T-CA------TC-TTTT-----C------TTCA-TCCCCAGGGCTCagcc
gi|4 : ctGAATAAATGTTGCA-ATAA-------AT-TAAAAT---T--TCCGGCAT--CA-C-T-CA------ACCTTTC-----C-----TTTAT-TCCCCAGGGCTtgc
gi|5 : actGGATTAATGTTGT---TAA--T--A-AT-TAAGAT---T--TCCT---T--CG-C-T--A------AC-TTTC-----C-----TTTTT-TCCCCAGAGTTC
gi|6 : TAAATGTTGTACATAA--TG-A-AT-TAAGAT---T--GACT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAG
gi|7 : AATGTTGTA-A--A-----A-AT-TA-GAT---T--TTCA---T--CA-C-T-CA------TC-TTTC-----CCT---TTTTT-TTCACAGGGTTCa
gi|8 : GTTGTG-ATAA--T-------TAAG-T---T--TTCA---T--CA-C-T-TA---------CTTC-----C-----TGTTT-TTTCCAGGGCTCtg
gi|9 : TTGTACATAA--TCAA-AT-TA-GAT---TCTTTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCtgt
blockSeqs : C ATTAC G AAA CT GGCA GT A A T . C CTTCTT A
blockSeqs : C TCAA . . . A . . . T . . TTTTTT T
blockSeqs : . TGA . . . A . . . . . . CTTCT .
blockSeqs : . TA . . . A . . . . . . CCTTT .
blockSeqs : . TA . . . A . . . . . . CTTTC .
blockSeqs : . A . . . T . . . . . . CCT .
blockSeqs : . A . . . A . . . . . . CT .
blockSeqs : . T . . . T . . . . . . C .
blockSeqs : . . . . . T . . . . . . C .
blockSeqs : . . . A . . . . . . C .
blockSeqs : . . A . . . . . . C .
blockSeqs : . . T . . . . . . C .
blockSeqs : . . T . . . . . . C .
blockSeqs : . . T . . . . . . C .
blockSeqs : . . T . . . . . . T .
blockSeqs : . . T . . . . . . C .
blockSeqs : . . T . . . . . . T .
blockSeqs : . . A . . . . . . C .
blockSeqs : . . T . . . . . . C .
blockSeqs : . . T . . . . . . C .
blockSeqs : . . A . . . . . . C .
blockSeqs : . . A . . . . . . C .
blockSeqs : . . T . . . . . . C
blockSeqCons : TA***** ******
originalCons : GGATAAATGTTGTA-ATAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
finalCons : GGATAAATGTTGTA-ATAATA-----AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
Alignments
lowQualScore : 2222222 11111111111
lowQualScore : 8 3333333 3 222 22 3333 22 1 1 3 444444 1 55555555555 3
lowQualScore : . ....... . ... .. .... .. . . . ...... . ........... .
lowQualScore : 0 0000000 6 999 33 9999 33 7 7 3 888888 7 66666666666 5
consensus : GGATAAATGTTGTA-ATAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
Reference ( family-5973 ) : GGATAAATGTTGTA-ATAA--T--A-AT-TAAGAT---T--TTCN---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCCCAGGGCTC
gi|1 : TTGTA-ATAA--T--A-AA-TTAG-T---T--TTCA---T--CA-C-T-TATCTTATAC-TTTA-----T-----CTTCT-TAACCAGGGCTC
gi|10 : ttactggtattaaattgttttGGATAAATGT---A-ATAA-----A-AT--AAGAT---T--TTCA---T--CA-C-T-CA------AC-CCCC-----C-----tgcc
gi|11 : aaatactAGAT---T--TTCA---T--CAAC-T-CA------AC-TTTC-----CTTCT-TTTTT-TTCGCAGGGCTCc
gi|12 : AGAT---T--TTCA---TGTCA-C-TTCA------AC-TTTC-----CCTTT-TTTTT-TTTCCGGGGCTtg
gi|13 : T---T--TTCA---T--CA-C-T-CA------AC-TTTCCTTT-C-----TTTTT-TTCGCAGGGCTC
gi|14 : gag-TGAGAT---T--TCCT---T--CG-C-C-CA------AC-TTTC-----C-----TTTTTATCCCTAAAGTTCt
gi|15 : AGAT---T--TTCA---T--CA-C-TTCT------AC-TTTC-----CTTCTTTTTTT-TTCACAGGGCt
gi|16 : AGAT---T--TCCT---T--CG-C-C-CA------AC-TTTC-----C-----TTTTA-TCCCTAAAGTTC
gi|17 : gGAT---T--TCCT---T--CG-C-T-CA------AC-TTTC-----CT----TTTTT-TCCCCAGAGTTCt
gi|18 : GAT---T--TTCA---T--CA-C-T-CA------AC-TTTT-----C------TTCG-TCCCCAGGGCTCt
gi|19 : GAT---T--TTCA---T--CA-C-T-CA------AC-TTTT-----C------TTCT-TACCCAGGGCTCtg
gi|2 : AAATGTTGTA-ATAA--T--A-AT-CAAGATAAAT--TCCT---T--CA-CAT-CA------AC-TTTCTTTTTT-----TTTTT-TTCCCAGAGTTCtg
gi|20 : tggagtaAT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAGt
gi|21 : AT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAGagtcc
gi|22 : AT---T--TTCT---T--CG-C-T-CA------AC-TTTC-----T-----TTTTT-TCCCCAGAGTTCagtcc
gi|23 : GAT---T--TTCT---T--CA---T-CA------AC-TTTC-----C-----TTTTTTTCCTCAAGt
gi|24 : AT---T--TTCT---T--CA-C-T-CA------AC-TTTC-----T-----TTTTT-TCCTCAAGagt
gi|3 : GGATAAATGTTGTA-ATAAATT--ACATGCAATAT---T--TTCA---T--CA-C-T-CA------TC-TTTT-----C------TTCA-TCCCCAGGGCTCagcc
gi|4 : ctGAATAAATGTTGCA-ATAA-------AT-TAAAAT---T--TCCGGCAT--CA-C-T-CA------ACCTTTC-----C-----TTTAT-TCCCCAGGGCTtgc
gi|5 : actGGATTAATGTTGT---TAA--T--A-AT-TAAGAT---T--TCCT---T--CG-C-T--A------AC-TTTC-----C-----TTTTT-TCCCCAGAGTTC
gi|6 : TAAATGTTGTACATAA--TG-A-AT-TAAGAT---T--GACT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCAAG
gi|7 : AATGTTGTA-A--A-----A-AT-TA-GAT---T--TTCA---T--CA-C-T-CA------TC-TTTC-----CCT---TTTTT-TTCACAGGGTTCa
gi|8 : GTTGTG-ATAA--T-------TAAG-T---T--TTCA---T--CA-C-T-TA---------CTTC-----C-----TGTTT-TTTCCAGGGCTCtg
gi|9 : TTGTACATAA--TCAA-AT-TA-GAT---TCTTTCT---T--CA-C-T-CA------AC-TTTC-----C-----TTTTT-TCCTCtgt