lowQualScore                  :                                                                                                                                55555                          11111111      2222222222222   111111                     2        11     2                                             11                                                    111    22222               222222222222          11  22222                           22222222222222          33333333333333333   2222222222222                                              444                                                                         22           333333333333      222                                           11                                33    11           111                                         2222222222222222                                                     11111111111                    2   11            3333       1                                             33                         
lowQualScore                  :                                                                                                         4  22       2    2     33333 2  2    22            4  11111111      9999999999999   888888             77  5   5  5 5 0 55     3    66  0   7777   777               4   4   55    4  99  55        8888  4      444    4   4  4   333    00000    4    55    000000000000  4   4   11  11111      0  4 4   1    55 4   77777777777777   8  55  44444444444444444   2222222222222     55   0  55   55    55  4   4  8 4        444 0 55   3   3    55 3    3           666    3     33         2 3 3  44 3 55 3     66  666666666666   44 111  2 2    2 2  33 2 33 444444         33    00 5    4       3       3 55    3 77    00 0         222 4 4 1  4 55    55   55  0   55   88     9999999999999999  66 4 4    4  4         4 4  3        55  3   8     99999999999    55  4     55    9   00 777 66  4  6666  4  4 3     4   8888        55   4 4     4    5  66 66            5        2   
lowQualScore                  :                                                                                                         .  ..       .    .     ..... .  .    ..            .  ........      .............   ......             ..  .   .  . . . ..     .    ..  .   ....   ...               .   .   ..    .  ..  ..        ....  .      ...    .   .  .   ...    .....    .    ..    ............  .   .   ..  .....      .  . .   .    .. .   ..............   .  ..  .................   .............     ..   .  ..   ..    ..  .   .  . .        ... . ..   .   .    .. .    .           ...    .     ..         . . .  .. . .. .     ..  ............   .. ...  . .    . .  .. . .. ......         ..    .. .    .       .       . ..    . ..    .. .         ... . . .  . ..    ..   ..  .   ..   ..     ................  .. . .    .  .         . .  .        ..  .   .     ...........    ..  .     ..    .   .. ... ..  .  ....  .  . .     .   ....        ..   . .     .    .  .. ..            .        .   
lowQualScore                  :                                                                                                         0  88       0    0     44444 0  0    88            7  66666666      9999999999999   777777             99  7   0  0 0 2 88     2    99  2   0000   666               3   4   66    0  44  55        5555  0      666    0   0  4   999    00000    0    55    555555555555  0   0   22  00000      8  0 0   3    55 0   55555555555555   0  55  33333333333333333   0000000000000     55   4  55   55    55  0   0  0 0        777 7 00   6   6    00 6    6           444    3     99         9 3 3  22 1 44 7     88  111111111111   22 555  9 9    9 9  99 9 99 444444         99    77 7    0       6       6 00    6 77    00 8         444 0 0 6  0 55    55   55  4   55   77     4444444444444444  11 4 4    4  0         0 0  2        55  2   0     00000000000    55  0     44    1   66 888 11  4  4444  0  0 3     0   5555        55   0 0     0    0  99 77            0        1   
consensus                     :                                                                                                  ACAGGGG-CT--TGTCACG-AAAT-ATTTGC---AT-TC-TTAT--GTAAATGACCCC-TC--------TCTATATTT-AAA----T-ACA--A-GGGGGGAATCTCGAA--AC-GCGAGA-T-CCTC-TACCC-TAAA--TTTTAA-TC-CAACT-GGTTTTCTAATTTTCGGAT-GGCTTATCA-TC-GCC--GGCCGAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAATTTTCTATG-TTAT--GCTG------------TC-AAA-TTGT-GA---C-AACATGTAT-A-TTTAAATA--A-ATA--------------TTG-TA--CC----------------TTTT-------------TTCTC--GGTATT--TTC--GTCT--GA-CGA-CA-A-GTCTTTCCA--ATG--TAT-AGC-GACG--G-AGTG-AATTTCACTAC---GCAT-TCTGA--TTGGTCGAT-A-T-GT--T-T-AAAATCAA--CT-------TTGA-GTA--C---GA-G-TTAA-T-TT--A-A--AC-A-T-ATCGACCAA--TCAG-AAATGCG-TAGTGAA-ATTCACT-C--CGTC-GC-TATA--CATGGAAAGAC-T-T-G-TCGT-C--AGAC--GAA--AATACC--GAG-AAAAAA----------------GG--T-A-CAAT-AT-TTATTTAAA-T-ATACATGTTGG--TCACAA-TTTGA-----------CAGC--AT-AACATA-GAAA-TTG--A---A--CA-TA--TCTG-CT-ACCCACA-GCT----ACTCGGCC--GGC-G-ATGAT-AGCC-AT--CCGAAAATTAGAAAA-CCAGTTGGNTTA
Reference ( gi|2 )            :                                                                                                  ACAGGGG-CT--TGTCACG-AAAT-ATTTGCGCAAT-TC-TTAT--GTAAATGACCCC-TC--------TCTATATTTTAAA----T-ACA--A-GGGGGGAATCTCGAA--AC-GCG-GA-T-CCTC-TACCCCTAAA--TTTTAA-TC-CAACT-GGTTTTCTAATTTTCAGAT-GGCTTATCA-TC-ACC--GGCCAAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAATTTTCTATG-TTAT--GCTG------------TC-AAA-TTGT-GA---C-AACATGTAT-A-TTTAAATA--A-ATA--------------TTG-TA--CC----------------TTTT-------------TTCTC--AGTATT--TTC--GTCT--GA-CGA-CA-A-GTCTTTCCATTATG--TAT-AGC-GACG--G-AGTG-AATTTCACTAC---GCAT-TCTGA--TTGGTCGAT-A-T-GT--T-TAAAAATCAA--CT-------TTGAAGTA--C---GA-G-TTAA-T-TT--A-A--AC-A-T-ATCGACCAA--TCAG-AAATGCG-TAGTGAA-ATTCACT-C--CGTC-G--TATA--CATGGAAAGAC-C-T-G-TCGT-C--AGAC--GAA--AATACT--GAG-AAAAAA----------------GG--T-A-CAAT-AT-TTATTTAAA-T-ATACATGTTGG--TCACAA-TTTGA-----------CAGC--AT-AACATA-GAAATTTG--A---A--CA-TA--T-TG-CT-ATCCACA-GCT----ACTTGGCC--GGC-G-ATGAT-AGCC-AT--C--AAAATTAGAAAA-CCAGTTGGATTA
gi|1                          :                                                                                                  ACAGGGG--T--TGTCACG-AAAT-ATTTGC---AT-TC-TTAT--GTAAATGACT---TC--------TCTA-ATTT-AAA----TCACA--A-GGGGGGAATCTCGGA--AC-GCGAGA-T-CCTC-TACCCCTAA---TTTTAA-TG-CAACT-GGTTTTCT-ATTTTCGGAT-GGC-TATCA-TC-G-C--GGCCAAGT----AG-CTGT-G-G-TAGC-AGA-TA-TGT---TCAA-TTTCTATGTTTAT--GCTG------------TC--AA-TTG--GAC--C-AACATGTAT-A-TTT-AATA--A-ATA--------------TTG-TA--CCT---------------TTTT-------------TTCTC--AGTATT--TTC--GTCT--GA-CGA-CA-A-GT-TTTCC---ATG--TAT-AGT-GACG--G-AGTGAAAATTCACTAC---GCATCTCTGA--TTGGTCGAT-A-T-GT--T-T-TATATTAA--CT-------C----GTA--CTCAAA-G-TTGA-T-TT--A-A--G--A-C-ATCGA-CAA--TCAG--AATGCG-TAG-GGA-ATTCACT-C--CGTC-GCTTATA--C-TGG--AGAC-T-T-G-TC---C--AGAC--GAA--AATACT--GAG--AAAAA----------------GG--TAA-CAAT-ATATTATTTAAA-T-AT-CATGTTGG--TC-CAC-TTTGA-----------CAG---AT-AACATA-GAAA-TTG--A---A--CA-TA--TCTG-CT-ACCCACA-GCT----ACTTGG-C--GGC-G-ATGA--AGCC-AT--CCGAAAATTAGAAAA-CCAGTTGCATTA
gi|10                         : cagggcttgtccgaaatattgcattcttatgaaatgaccctctctatattaaatacacaaggggaatctcgaaacgcgagatctctaccctaaatttACAGGTGTCTAATGTCACG-AAGC-ATTTGC---AT-TC-TTATATGTAAATGACCCC-CCCCCCCCCTTCCATATT-------------A--A-------AAT--------AC-GCGAGA-T-CCTC-TACCC-TAAA--TTTTAA-AC-CAACT-GTTTTTCTAATTTTCGGAT-GAC-TATCT-TC-ACA--GGCTGAGT----AG-CTCAGG-C-TAGC-AGA-T
gi|11                         :                                                                                                  ACAGGGG-CT--CGTCACG-AAAT-ATTTGC---AT-TC-TTAT--GTAAATGATCCC-TC--------TCTATA-TTAAAA----T-ACA--C-AAGGAGATTCCC
gi|19                         :                                ggggctcgtcacgaaatatttgcactcttatgtaaatgatccctctctatatcaaaatacacaaggACAGGG--CT--TGTCACG-AAAT-ATTTGC---AT-TC-TTAT--GTAATTGACCCC-TC--------TCTATAT
gi|23                         :                                                                                                  ACAGGGG-CT--TGCCACG-AAAC-ATTTGC---AT-TC-TTAT--GTAAATGGCCCC-Taaaata
gi|17                         :                                                                                                  ACAGGAG-CT--TGTTACG-AAAC-ATTTGCG---T-TC-TTAT--GTAACGGACCCC-GC--------TCTGTA
gi|25                         :                                                                              ctatatcaaaatacactagtACAGTGG-CT--TGTCACG-AAAT-ATCTGC---AT-TC-TTAT--ATAAATg
gi|15                         :                                                                                                 cACAGGGGACT--TGTAACG-AAAC-ATCTG----ATGTC-ATGT--GTAAATGACCCCTTC--------ACTATATT
gi|26                         :                                                           cttgtgaacatgttatccatatctatatcaaaatacaccACAGGGG-CT--TGTCACG-AAAC-ATTTGT---AT-TC-TTTT--GCAAATg
gi|24                         :                                                                                                  ACAGGGG-CT--TGTCACG-AAAT-ATTTGC
gi|27                         :                                                                               tttatatagcgccctatacACAGGGG-CT--TGTCACG-AA--------------------AT--GTAAATGACCCC-TC--------TC
gi|18                         :                                                                                                tgcCAGGGG-CT---GTCA---AAAT-ATTTGC---AT-TC-TTAT--GTAAATGACCCC-TC--------TCTATA--TTAA-------ACA--A-GAGAG
gi|20                         :                                                                                                   CAGGAG-CT--TCTCACA-AAGC-ATTTGC---AT-TC-TTAT--GTAAATTACCCC-TC--------TGTAT
gi|3                          :                                                                                                     GGCG-CT--TGTCACG-AAAT-ATATGC---AT-T--TTAT--GTAAATGACCCC-TC--------TCTAT-TATTAAA----TAACA--A---GGGGAA-CTCCAA--AC-GCGCGA-TCCCTCTTACCCTTAAA---TTTAA-TC-CATAT-GGTTTTTTACTAT--GGAT-GGC-TATCA-TCTGTC--GGCCAAGC----AGCCTGTGG-GTTAGC-AGATTA-TGTTA-TCAA-TTTCTATG-TTATTGGCTG------------TC-AAATTTGT-GA---C-CAAATGTAT-ATTTTAAAT---A-ATA--------------TTG-TA--CC----------------CTTT-------------T--TC--AGTATT--TTC--GTCT--GA-CGACCA-A-GTCTTTCTATGAT---TAT-AGCGGACGATG-AGGG-AATTTCACTAC---GCAT-TCTGA--TTGGACGAT-A-T-GT--T-T-AAATTTAA--CTCGGTTACTCAAAGT----------T-TTGA-T-TTCAA-A--AC-A-T-ATCGACCAA--Ttaaaat
gi|11                         :                                                                                                 aggtGGGG-CT--CGTCACG-AAAT-ATTTGCAC----TC-TTAT--GTAAATGATCCC-TC--------TCTATA-TCAAAA----T-ACAC-A-AGGGGGAATCTC
gi|22                         :                                                                                                     GGAA-CT--TGTAACG-AACC-ATCTG---ATT-TC-ATGT--GTAAATGACCCC-TC--------ATTATcttgtgtattttaatatagagagggatcatttacataagaatgcaaatatttcgtgacgagcccctgt
gi|1                          :                                                                                                      GGG-CT--TGTC-CG-AAAT-ATT---GCA-T-TC-TTAT--G-AAATGACCC--TC--------TCTATATT--AAA----T-ACA--C-AAGGGGAATCTCGAA--AC-GCGAGA-T-C-TC-TACCC-TAAA--TTTTAA-TG-CAACT-GGTTTTCTAATTTTCGGAT-GGCT--TCA-TC-GCC---GCCAAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAA-TTTCTATG-TTAT---CTG------------TC-AAA-GTG--GAC--C-AACATG-AT-A-TTTAAATA--ATATA--------------TTGTTA--CC-----------------TTT-------------TTCTC--AGTATT--TTC--GTCT--G---GA-CA-A-GTC--TCCA----G--TATAAGC-GACG--G-AGTG-AATTCC-CTAC---GCAT-TCTGA--TT-GTCGAT-G-T-CT--T----AAATCAA--CT-------TTG-AGTA--C---GA-G-TTAA-TATA--A-A--AC-A-T-ATCGACCAA--TCAG-AGATGCG-TAGTGAATTTTCACT-C--CGTC-AC-TATA--CATGGAAA-AC-T-T-G-TCGT-C--AGAC--GAA--AATACT--GAGAAAAAAA----------------GG--T-A-CAAT-AT-TTA-TTAAA-T-ATACATGTTGG--TC-CAA--TTGA-----------CAGC--ATAAACATA-GAAA-TTG--A---A--CA-TA--TCTG-CT-A-CCACA-GCT----ACTTGGCC---GC-G-ATGAT-AGCC-AT--CCGAAAA-TAGAAAA-CCAGTTGCATTA
gi|5                          :                                                                                                     caGG-CT--TGTCACG-AAA--ATTTGC---AT-TCCTTAT--GTAAATGACCC--TC--------TCTATATTA-AAA----T-ACACAA-GGGGGGAATCTCAAA--AC-GCGCGA-T-CTT---ACCC-TAAAGATATTAA-TCATAA----GTCTTCTAATATTCGGAT-GG--TATCA-TC-GTCTGAGCCAAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TTCATTTC--ATG-TT-T--GCTG------------TC-AAA-ATGT-GA---CCAACATG-ATGA-TTTAAATA--A-ATAA-------------TTG-TA--CC----------------CTTT-------------TTCTC--AGT-TT--TTC--GTCT--GAACGA-CA-AAGTCTTTC----ATGGTTAT-AGC-GACG--G-AGT--AATTCCACTAC---GCAT-TCTGA--TTGGACGAT-ACT-GT--TCT--AAATTAA--CG-------TC---GTA--CTCAAA-GATTGA-T-TT--A-A--AC-A-T-ATCACCCAA--TCAaaattaggggtagaggatctcgcgttccgagattccccccttgtgatttaaattagagaagtcatttacataagaatgcaaatatttcgtgacaacccctgt
gi|4                          :                                                                                                     caGG-CT--TGTCACGTAAATTAGTTG-GCA---TC-GTAT--GTAAACGACCCCGTCA-------TCCATAGT--AAAATACT-ACA--ATGGGGGGAATCTCGAA--ACGGCG-AAGT-TCT--TA-CCCTAAA--TTAAAACTC-CAACTGGGTTTCCTAAGTTCGGGATAGGCTGATTATTC-GCC--TGGCAAGTTGAGAG-CTGTGGTG-AGGCAAGA-TAGTGTGGGTCAATTGCGTGTG-TTAT--G-TGGGGGCGGCGGGTTCGAAG-TTGG-GAGGCC-AACATTTAT-A-TT---ATT--A-ATA---------------TG-TA--GC-----------------TTT-------------TCCTC--AGTATTGATTCGGGTCTTGGA---A-CAGA-G--TTTCCA----G--TAT-AGC-GACG--GAAGTG-AATTTAACTATCGGGCTT-ACTGGATTTGGTCGATCA-T-GCTGT-TAAA
gi|21                         :                                                                                                       GG-CT--TGTCACG-AAAT-ATTTGC---AT-TC-TTAG--GTAAATGtaaatta
gi|16                         :                                                                                                                           tgtattttaaT-TC-TTAT--GTAAATGACCCC-TT--------TCTGTATgggccc
gi|6                          :                                                                                                                                      aggggcttgtaatcctctgtatggcaatgaaccccctctataataaaatatacgtatttttGAGGAATTGCGAATTAC-G-A-GA-T-CCTT-TACCC-TAAA--TTGTAA-AC-CAA---------CTGGTTTTAAAAT----TT---------TC--GGACGAGT----CG-CC--------AGC-CGA-----GT---T---------A-G-CTAT--GCCT------------TC-AAA-TTGTAAA---C-AAAAAGTAC-A-TCTGAATAACA-ATNNNNNNNNNNNNNTTTTT-TA--TT----------------TTTTTTATTTTTTATTTTTTTT--GGTGTT--TTC--GTTT--AA-CAA-CA-A-GTCTTTCC---ATG--TAC-AGC-GGCA--G-AGTG-AATTTCACTCC---ACGT-TTTGA--TTGGTCGAT-
gi|7                          :                                                                                                                                                                                         taagagcaattttgagtacatattaatttag-GA-T-CTT--TACCC-TAAA--TTGTAA-AC-CAACT-GGTTTTTAAATTTTCGGAC-Gtttcaccggctagaacggcacataagg
gi|9                          :                                                          attaagaacaattttgagtacacattaatttagatcgaccaatcaaaacgtggggtgaaattcactctgccgctgtacatggaaagactgtgtgttaaacgaaaacccaaaaaaaaaaaaaaaaaaagggggggggtggcaattgttattcagatgtacttttgtttacaatttgaagcatagctaactcgctggcgactTTTCTAATATTCGGAC-GACT-ATCG-TA-GCC--GGCCGAGT----AG-CAGTGG-A-TAGC-AGA-TA-TAT---TCAATTA-CAATG-CTAT--GCTG------------TC-AAA-TTGT-AA---CCAACATGTAT----CTAAATA--A-CAA--------------TTG-CA--CC----------------TTTT-------------TTCTCTTGGTGTT--TTC--ATCT--GA-CGA-CA-A-GTCTTTCCATCA-----AT-------CG--G-ATTG-AATTtc
gi|8                          :                                                                                                                                                                                                                                                                                       TATCA-TC-GCC--GGCCAAGT----AG-CTGAGG-G-TGGC-AGA-TA-TGT---TCAATGT-CTATG-TTAT--GCTA------------AC-AAA-TTGT-GA---CCAACATGTAT-A-TTTAATTA--A-ATA--------------TTG-TA--CC----------------TTTT-------------TTCTC--AGTATT--TTC--GTCT--GA-CGA-CA-A-GTCTTTCC---ATG--TAT-AGC-GACG--G-AGTG-AATTTCACTAC---GCAT-TCTGA--TTGGTCGAT-A-T-GT--T-T--AAATTAA--CT-------
gi|12                         :                                                                                                                                                                                                                                                  attgattcatcgaaccattgatttacctttgagtacgTATCA-TC-GCC--GGCCAAGT----AG-CTGTGG-G-TAGC-AGC-TA-TGT---TCAA-TTTCTATG-TTAT--GCTG------------TC-AAA-TTGT-GAC--C-AACATGTAT-A-TTTAAATA--A-ATA--------------TTG-TAGTAC----------------TTTT-------------TCCTC--AGTATT--TTC--GTCT--GA-CGA-CA-A-GTCTTg
gi|7                          :                                                                                                                                                                                                                                                                                                                                                          cG-CTAT--GCT-------------TC-AAA-TTGTAAA---C-AAAA-GTAC-A-TCTGAATA--A-CAA--------------TTGCCA--CCCCCCCCCTTTTTTTTTTTTT-------------TTTTT--TGGGTT--TTC--GTTT--AA-C-A-CACA-GTCTTTCC---ATG--TAC-AGC-GGCA--G-AGTG-AATTTCACCCC---ACGT-TTTGA--TTGGTCGAT-
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          attaagaacaattttgagtacacattaatttagATG--TAT-AGC-GACG--G-AGTG-AATTTCCCTAC---GCAT-TCTGA--TTGGTCG---A-T-GT--T-T--AAATCAA--CT-------TTG-AGTA--C---GA-G-TTAA-T-AT--A-A--AC-A-T-ATCGACCAA--TCAG--AATGCtaactcgctggcgactcgtccgaaaatttaaaaaccagttggtttacaatttagggtaaagatctc
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tccG--TAT-AGC-GACG--G-AGTG-AATTTCACTAC---GCAT-TCTCA--TTGGTCAAT-A-T-GT--T-T--AAATCAA--CT-------TTG-AGTA--C---GA-G-TTAA-T-TT--A-A--ACAA-T-ATCGACCAT--TCAG-AA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ---GCAT-TCTGA--TTGGTCGAT-A-T-GT--T-T--ATATTAA--CT-------C----GTA--CTCAAA-G-TTGA-T-TT--A-A--AC-----ATCGACCAA--TCAG--AATGCG-TAGGGAA-ATTCACT-C--CGTC-GC-TATA--CATGGAtgt
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAT-TCTGA--ATGGTCGAT-A-TTGT--T-TAAA--TTAA--CT-------C----GTA--CTCAAA-G-TTGA-T-TT--A-A--AC-A-T-ATTGACCAA--TGAG-AA-TGCG-TAGTGAA-ATTCACT-C--CGTC-GC-TATA--C
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGA--TTGGGTGAT-A-T-GT--T-TAAA--TCAAT-CT-------TTGA-GTA--C---GACG-TTAA-T-TT--AGA--AC-AGT-ATCGTCCAA--TCAG-AA-TGCG-TAGTGGA-ATT-ACT-C--CGTC-GC-TATAACCATG-AAAGAC-T-TTG-TCGTTC--AGAC--GAA--AA-ACT--GAG-AAAAAG----------------GG--T-A-CAATTAT-TTATTTAAA-TCAT-CATGTTGG--TCACAT-TTTGA-----------CAGC--A--AACAT--GAAA--TGA-A---A--CA-TA--TCTG-CT-ACCCACA-GCT----ACTTGGCTCAGAC-G-ATGAT-A-CC-AT--CCGAATATTAGAAGA-Ct
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                            caggcttgtcacgaaaatttgcattccttatgtaaatgaccctctctatattaaaatacacaaggggggaatctcaaaacgcgcgatcttaccctaaagatattaatcataaA--TTGGTCGAT-A-T-GT--T-TTGAAATCAAAACT-------TTGA-GTAACC---GA-G-TTAAAT-TT--A-A--AC-A-T-ATCGTCCAA--TCAG-AA-TGCG-TAGTGAA-ATTCCCT-CATCGTCCGC-TATAATCATAGAAAGAC-T-T-GGTCGT-C--AGAC--GAA--AATACT--GA---AAAAG----------------GG--T-A-CAAT-AT-T-ATTTAAAAT-ATACAT-TTGG--TCACAAATTTGA-----------CAGCCAAT-AACATA-GAAA-TTGATA---A--CA-TAATC-TG-CTAACCCACAGGCT----GCTTGGCC--GACAG-ATGAT-AGCC-AT--C--CATAGTAAAAAA-CCATATGGATTA
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aggtggcgcttgtcacgaaatatatgcattttatgtaaatgacccctctctattattaaataacaaggggaactccaaacgcgcgatccctcttacccttaaatt--T-TAAGAA-CAA--TT-------TTGA-GTA--C---AC-A-TTAA-T-TT--A-G--A-------TCGACCAA--TCA--AAACGTG-GGGTGAA-ATTCACT-C--TGCC-GC-TGTA--CATGGAAAGAC-TGT-G-T-GT-T--AAAC--GAA--AACCCA--AAA-AAAAAAAAAAAAAAAGGGGGGGGG--T-GGCAAT-TG-TTATTCAGA-T-GTAC-TTTTGT--TTACAA-TTTGA------------AGC--AT-AGC
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aAAGAGCAA--TT-------TTGA-GTA--C---AT-A-TTAA-T-TT--A-G--A-------TCGACCAA--TCA--AAACGTG-GAGTGAA-ATTCACT-C--TGCC-GC-TGTA--CATGGAAAGAC-T-T-G-TTGT-T--AAAC--GAA--AACACC--AAA-AAAAAtaactcgctggcgactcgtccgaaaatttaaaaaccagttggtttacaatttagggtaaagatctc
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            t--CT-------TTGA-GTA--C---GA-G-TTAA-T-TT--A-A--AC-A-T-ATCGACCAA--TCAG--AATGCG-TAGTGAA-ATTCACT-C--CGTC-GC-TATA--CATGGAAAGAC-T-T-G-TCGT-C--AGAC--GAA--AATACT--GAG-AAAAAA----------------GG--T-A-CAAT-AT-TTAATTAAA-T-ATACATGTTGG--TCACAA-TTTGT-----------TAGC--AT-AACATA-GACA-TTG--A---A--CA-TA--TCTG-CC-ACCCTCA-GCT----ACTTGGCC--GGC-G-ATGAT-AGtaaaaaataaaaaaaataaaaaannnnnnnnnnnnnattgttattcagatgtactttttgtttacaatttgaaggcatagctaactcggctggcgactcgtccgaaaattttaaaaccagttggtttacaatttagggtaaaggatctcgtaattcgcaattcctctttcaccggctagaacggcacataagg
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             attgattcatcgaaccattgatttacA-A-TTTA-T-TT--A-ACAGC-A-TGATCGACCAAATCCAGTAAGCCCGATAGTTAA-ATTCACTTC--CGTC-GC-TATA--C-TGGAAA--CTC-T-G-T--T-CCAAGACCCGAATCAATACT--GAG--GAAAA----------------GC--T-A-C-AT-AT-TAAT---AA-T-ATAAATGTTGGCCTCCCAACTTCGAACCCGCCGCCCCCAC--AT-AACACACGCAA-TTG--ACCCA--CACTATCT-TGCCT-CACCACA-GCTCTCAACTTGCCA--GGC-GAATAATCAGCCTATCCC--GAACTTAGGAAACCCAGTTGGA
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ggcttgtcacgtaaattagttggcatcgtatgtaaacgaccccgtcatccatagtaaaatactacaatggggggaatctcgaaacggcgaagttcttaccctaaattaaaacA-ATTCAAT-C--CG-------ATT--GATGGAAAGAC-T-T-G-TCGT-C--AGAT--GAA--AACACCAAGAG-AAAAAA----------------GG--T-G-CAAT-TG-TTATTTAGA-T-A--CATGTTGG--TTACAA-TTTGA-----------CAGC--AT-AGCATT-GTAA-TTG--A---A--TA-TA--TCTG-CT-ATCCACT-GCT----ACTCGGCC--GGC-T-ACGAT-AGTC-GT--CCGAATATTAGAAAa
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGAC-T-T-G-TCGT-C--AGAC--GAA--AATACT--GAG-GAAAAA----------------GTACT-A-CAAT-AT-TTATTTAAA-T-ATACATGTTGG--TCACAA-TTTGA-----------CAGC--AT-AACATA-GAAATT-G--A---A--CA-TAG-C-TG-CT-ACCCACA-GCT----ACTTGGCC--GGC-G-ATGAT-AG
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 -TTATTCAGA-T-GTACTTTTTGT--TTACAA-TTTGA-----------AGGC--AT-AGC
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         taagagcaattttgagtacatattaatttagatcgaccaatcaaaacgtggagtgaaattcactctgccgctgtacatggaaagacttgttgttaaacgaaaacaccaaaaaaaataaaaaataaaaaaaataaaaaannnnnnnnnnnnnattgAATTTG--A---AGGCA-TA-----G-CT-A--------------ACTCGGCT--GGC-G-AC------TC-GT--CCGAAAATTTTAAAA-CCAGTTGGTTTAtaactcggctggcgactcgtccgaaaattttaaaaccagttggtttacaatttagggtaaaggatctcgtaattcgcaattcctctttcaccggctagaacggcacataagg
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       taagagcaattttgagtacatattaatttagatcgaccaatcaaaacgtggagtgaaattcactctgccgctgtacatggaaagacttgttgttaaacgaaaacaccaaaaaaaataaaaaataaaaaaaataaaaaannnnnnnnnnnnnattgttattcagatgtactttttgtttac-TG-CT-AGCCTGA-GCT----ACTCAGCC--TGT-G-AAGAT-AGTC-AT--CCGAAAATTAGAAAA-ACAGTTGGTTTAcaatttagggtaaaggatctcgtaattcgcaattcctctttcaccggctagaacggcacataagg
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              acaggtgtctaatgtcacgaagcatttgcattcttatatgtaaatgacccccccccccccttccatattaaaatacgcgagatcctctaccctaaattt--AAAATTTAAAAA-CCAGTTGGTTTAgat

lowQualScore                  :                                                                                                                     11111111        11       1111111111                           11                                                   11           111       1111                           222    1            11    444444444444             333       1                           1              11   11    111111               222222222                              111                           1111                  111   11                                                                                                        3333333333333    44444444444444444          33333333333333                                                                        1                                                          
lowQualScore                  :                                                             3  22       1    22      333  1  1 1   22            4  00000000      3 55    3  9999999999      0   1    6   7   6 1 33  6       99      6  6   2 6             1     6   44    6  6   444   3   4444  6      777    6   6  8   555    0  3       0 11    111111111111  8   99  5  000       0  8 8  0    6 8  8 0  8    6    3   6  0  11   11    444444  8 8 8  0 0   666666666      5    77 5          1    000         77         5 5    7777            4     555   00     4  66   55              4       0      6          4  2                5                    77   5  1111111111111    00000000000000000  77  5   33333333333333    77  1          1                       5   1 888888     5    22     2  1 0        0        0    1 1  5     0 1             1   
lowQualScore                  :                                                             .  ..       .    ..      ...  .  . .   ..            .  ........      . ..    .  ..........      .   .    .   .   . . ..  .       ..      .  .   . .             .     .   ..    .  .   ...   .   ....  .      ...    .   .  .   ...    .  .       . ..    ............  .   ..  .  ...       .  . .  .    . .  . .  .    .    .   .  .  ..   ..    ......  . . .  . .   .........      .    .. .          .    ...         ..         . .    ....            .     ...   ..     .  ..   ..              .       .      .          .  .                .                    ..   .  .............    .................  ..  .   ..............    ..  .          .                       .   . ......     .    ..     .  . .        .        .    . .  .     . .             .   
lowQualScore                  :                                                             8  66       9    66      333  9  9 9   66            4  99999999      4 88    1  8888888888      1   0    7   2   7 0 33  7       22      7  7   5 7             7     7   55    7  7   333   3   2222  7      555    7   7  0   000    6  8       8 00    000000000000  0   00  6  000       6  0 0  8    0 0  0 8  0    6    8   0  8  00   00    888888  0 0 0  8 8   222222222      7    99 7          4    000         99         7 7    3333            4     666   66     4  11   66              3       6      7          2  5                7                    99   7  4444444444444    00000000000000000  99  7   66666666666666    99  7          7                       7   4 777777     7    11     4  6 3        7        7    4 8  0     8 4             0   
consensus                     :                                                      ACAGGGG-CT--TGTCACG-AAAT--ATTTGC---AT-TC-T-TAT--GTAAATGACCCC-TC--------TCTATATTA-AAAT-AC---A--A-GGGGGGAATCTCGAAAC-GCGAGAT-CCTC-TA-CCCTAAA--TTTTAA-TC-CAACT-GGTTTTCTAATTTTCGGAT-GGCTTATCA-TC-GCC--GGCCAAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAATTTTCTATGTTAT--GCTG------------TC-AAA-TTGTGAC--CAACATGTAT-A-TTTAAATAA-AT-ATTG-TACCCTTTTTCTCAGTATT--TTC--GTCT--G-ACGA-C-A-AGTCTTTCCA--ATG--TATAGC-GACG--G-AGTGAATTTCACTAC---GCATTCTGA--TTGGTCGAT-A-TGTT-T-AAAATCAACTTTG-AGTAC---GAG--TTAAT-TT--AAAC-ATATCGACCAATCAGAAACGCGTAGTGAA-ATTCACTCCGTCGCTATACATGGAAAGACT-TGTCGTCAGACGAAAACACC--GAG-AA-------------AAAA-----------------GG--TA-CAA--------------TATT--TATTTAGATATACATGTTGGTCACAATTTGACAGCAT-AACATAGAAA-TTGAA-CATATCTGCTACCCACAGCTACTCGGCCGGCGACGATAGCCGTCCGAAAATTAGAAAACCAGTTGGNTTA
Reference ( family-5962 )     :                                                      ACAGGGG-CT--TGTCACG-AAAT--ATTTGC---AT-TC-T-TAT--GTAAATGACCCC-TC--------TCTATATTT-AAAT-AC---A--A-GGGGGGAATCTCGAAAC-GCGAGAT-CCTC-TA-CCCTAAA--TTTTAA-TC-CAACT-GGTTTTCTAATTTTCGGAT-GGCTTATCA-TC-GCC--GGCCGAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAATTTTCTATGTTAT--GCTG------------TC-AAA-TTGTGA---CAACATGTAT-A-TTTAAATAA-AT-ATTG-TACCTTTTTTCTCGGTATT--TTC--GTCT--G-ACGA-C-A-AGTCTTTCCA--ATG--TATAGC-GACG--G-AGTGAATTTCACTAC---GCATTCTGA--TTGGTCGAT-A-TGTT-T-AAAATCAACTTTG-AGTAC---GAG--TTAAT-TT--AAAC-ATATCGACCAATCAGAAATGCGTAGTGAA-ATTCACTCCGTCGCTATACATGGAAAGACT-TGTCGTCAGACGAAAATACC--GAG-AA-------------AAAA-----------------GG--TA-CAA--------------TATT--TATTTAAATATACATGTTGGTCACAATTTGACAGCAT-AACATAGAAA-TTGAA-CATATCTGCTACCCACAGCTACTCGGCCGGCGATGATAGCCATCCGAAAATTAGAAAACCAGTTGGNTTA
gi|1                          :                                                          GGG-CT--TGTC-CG-AAAT--ATT-GC---AT-TC-T-TAT--G-AAATGACCC--TC--------TCTATATT--AAAT-AC---A--C-AAGGGGAATCTCGAAAC-GCGAGAT-C-TC-TA-CCCTAAA--TTTTAA-TG-CAACT-GGTTTTCTAATTTTCGGAT-GGCT--TCA-TC-GCC---GCCAAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAA-TTTCTATGTTAT---CTG------------TC-AAA-GTG-GAC--CAACATG-AT-A-TTTAAATAATAT-ATTGTTACC-TTTTTCTCAGTATT--TTC--GTCT--G---GA-C-A-AGTC--TCCA--GTA--TA-AGC-GACG--G-AGTGAATTCC-CTAC---GCATTCTGA--TT-GTCGAT-G-TCTT----AAATCAACTTTG-AGTAC---GAG--TTAATATA--AAAC-ATATCGACCAATCAGAGATGCGTAGTGAATTTTCACTCCGTCACTATACATGGAAA-ACT-TGTCGTCAGACGAAAATACT--GAGAAA-------------AAAA-----------------GG--TA-CAA--------------TATT--TA-TTAAATATACATGTTGGTC-CAA-TTGACAGCATAAACATAGAAA-TTGAA-CATATCTGCTA-CCACAGCTACTTGGCC-GCGATGATAGCCATCCGAAAA-TAGAAAACCAGTTGCATTA
gi|10                         :                                                    caACAGGTGTCTAATGTCACG-AAGC--ATTTGC---AT-TC-T-TATATGTAAATGACCCC-CCCCCCCCCTTCCATATTA-AAAT-AC--------------------------GCGAGAT-CCTC-TA-CCCTAAA--TTTTAA-AC-CAACT-GTTTTTCTAATTTTCGGAT-GAC-TATCT-TC-ACA--GGCTGAGT----AG-CTCAGG-C-TAGC-AGA-Taaattaggggtagaggatctcgcgttccgagattccccccttgtgatttaaattagagaagtcatttacataagaatgcaaatatttcgtgacaacccctgt
gi|11                         :                                                         GGGG-CT--CGTCACG-AAAT--ATTTGC---AC-TC-T-TAT--GTAAATGATCCC-TC--------TCTATATCA-AAAT-AC---AC-A-AGGGGGAATCTC
gi|11                         :                                                      ACAGGGG-CT--CGTCACG-AAAT--ATTTGC---AT-TC-T-TAT--GTAAATGATCCC-TC--------TCTATATTA-AAAT-AC---A--C-AAGGAGATTCCCcttgtgtattttaatatagagagggatcatttacataagaatgcaaatatttcgtgacgagcccctgt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ggggctcgtcacgaaatatttgcactcttatgtaaatgatccctctctatatcaaaatacacaaggAAGACT-TGTCGTCAGACGAAAATACT--GAG-GA-------------AAAA-----------------GTACTA-CAA--------------TATT--TATTTAAATATACATGTTGGTCACAATTTGACAGCAT-AACATAGAAA-TTGAA-CATAGCTGCTACCCACAGCTACTTGGCCGGCGATGATAG
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                    TCCA---TG--TATAGC-GACG--G-AGTGAATTTCCCTAC---GCATTCTGA--TTGGTCG---A-TGTT-T--AAATCAACTTTG-AGTAC---GAG--TTAAT-AT--AAAC-ATATCGACCAATCAG-AATGC
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                            G--TATAGC-GACG--G-AGTGAATTTCACTAC---GCATTCTCA--TTGGTCAAT-A-TGTT-T--AAATCAACTTTG-AGTAC---GAG--TTAAT-TT--AAACAATATCGACCATTCAGAA
gi|15                         :                                                      ACAGGGGACT--TGTAACG-AAAC--ATCTG----ATGTC-A-TGT--GTAAATGACCCCTTC--------ACTATATTtgt
gi|16                         :                 cttgtgaacatgttatccatatctatatcaaaatacaccAGGGG-CT--TGT------AAT-------C----C-TC-TGTAT--GGCAATGAACCC-CC--------TCTATAATA-AAAT-AT---A--g
gi|16                         :                                                                                          T-TC-T-TAT--GTAAATGACCCC-TT--------TCTGTATAA-AAAT-AC---cgtatttttatacagaaaggggtcatttacataagaa
gi|17                         : aggggcttgtaatcctctgtatggcaatgaaccccctctataataaaatatacACAGGAG-CT--TGTTACG-AAAC--ATTTGC---GT-TC-T-TAT--GTAACGGACCCC-GC--------TCTGTA
gi|18                         :                                   ctatatcaaaatacactagtCAGGGG-CT---GTCA---AAAT--ATTTGC---AT-TC-T-TAT--GTAAATGACCCC-TC--------TCTATA-TT-AA---AC---A--A-GAGAGg
gi|19                         :                                                      ACAGGG--CT--TGTCACG-AAAT--ATTTGC---AT-TC-T-TAT--GTAATTGACCCC-TC--------TCTATA-TA-AAAT-A
gi|2                          :                                                      ACAGGGG-CT--TGTCACG-AAAT--ATTTGCGCAAT-TC-T-TAT--GTAAATGACCCC-TC--------TCTATATTTTAAAT-AC---A--A-GGGGGGAATCTCGAAAC-GCG-GAT-CCTC-TACCCCTAAA--TTTTAA-TC-CAACT-GGTTTTCTAATTTTCAGAT-GGCTTATCA-TC-ACC--GGCCAAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAATTTTCTATGTTAT--GCTG------------TC-AAA-TTGTGA---CAACATGTAT-A-TTTAAATAA-AT-ATTG-TACCTTTTTTCTCAGTATT--TTC--GTCT--G-ACGA-C-A-AGTCTTTCCATTATG--TATAGC-GACG--G-AGTGAATTTCACTAC---GCATTCTGA--TTGGTCGAT-A-TGTT-TAAAAATCAACTTTGAAGTAC---GAG--TTAAT-TT--AAAC-ATATCGACCAATCAGAAATGCGTAGTGAA-ATTCACTCCGTCG-TATACATGGAAAGACC-TGTCGTCAGACGAAAATACT--GAG-AA-------------AAAA-----------------GG--TA-CAA--------------TATT--TATTTAAATATACATGTTGGTCACAATTTGACAGCAT-AACATAGAAATTTGAA-CATAT-TGCTATCCACAGCTACTTGGCCGGCGATGATAGCCATC--AAAATTAGAAAACCAGTTGGATTA
gi|20                         :                                                       CAGGAG-CT--TCTCACA-AAGC--ATTTGC---AT-TC-T-TAT--GTAAATTACCC---C--------TCTGTATTA-AAAT-
gi|21                         :                                                           GG-CT--TGTCACG-AAAT--ATTTGC---AT-TC-T-TAG--GTAAATG
gi|22                         :                                               tgtattttaaGGAA-CT--TGTAACG-AACC--ATCTGA---TT-TC-A-TGT--GTAAATGACCCC-TC--------ATTATgggccc
gi|23                         :                                                      ACAGGGG-CT--TGCCACG-AAAC--ATTTGC---AT-TC-T-TAT--GTAAATGGCCCC-T
gi|24                         :                                                      ACAGGGG-CT--TGTCACG-AAAT--ATTTGC---
gi|25                         :                                   tttatatagcgccctatacACAGTGG-CT--TGTCACG-AAAT--ATCTGC---AT-TC-T-TAT--ATAAAT
gi|26                         :                                                     cACAGGGG-CT--TGTCACG-AAAC--ATTTGT---AT-TC-T-TTT--GCAAAT
gi|27                         :                                                      ACAGGGG-CT--TGTCACG-AA----------------------AT--GTAAATGACCCC-TC--------TC
gi|3                          :                                                      tgcGGCG-CT--TGTCACG-AAAT--ATATGC---AT-T--T-TAT--GTAAATGACCCC-TC--------TCTATTATT-AAATAAC---A--A---GGGGAA-CTCCAAAC-GCGCGATCCCTCTTA-CCCTTAA--ATTTAA-TC-CATAT-GGTTTTTTACTAT--GGAT-GGC-TATCA-TCTGTC--GGCCAAGC----AGCCTGTGG-GTTAGC-AGATTA-TGTTA-TCAA-TTTCTATGTTATTGGCTG------------TC-AAATTTGTGA---CCAAATGTAT-ATTTTAAAT-A-AT-ATTG-TACCCTTTT--TCAGTATT--TTC--GTCT--G-ACGACC-A-AGTCTTTCT---ATGATTATAGCGGACGATG-AGGGAATTTCACTAC---GCATTCTGA--TTGGACGAT-A-TGTT-T-AAATTTAAC-TCG-GTTACTCAAAGTTTTGAT-TTCAAAAC-ATATCGACCAAT
gi|4                          :                                                       aggtGG-CT--TGTCACGTAAATTAGTTGGC---AT--C-G-TAT--GTAAACGACCCCGTCA-------TCCATAGTA-AAAT-ACTACA--ATGGGGGGAATCTCGAAACGGCGAAGT-TCT--TA-CCCTAAA--TTAAAACTC-CAACTGGGTTTCCTAAGTTCGGGATAGGCTGATTATTC-GCC--TGGCAAGTTGAGAG-CTGTGGTG-AGGCAAGA-TAGTGTGGGTCAATTGCGTGTGTTAT--G-TGGGGGCGGCGGGTTCGAAG-TTGGGAGGCCAACATTTAT-A-TT---ATTA-AT-A-TG-TAGC-TTTTCCTCAGTATTGATTCGGGTCTTGG-A--A-C-AGAG--TTTCCA----G--TATAGC-GACG--GAAGTGAATTTAACTATCGGGCTTACTGGATTTGGTCGATCA-TGCTGT-TAAATAAATT
gi|5                          :                                                           GG-CT--TGTCACG-AAA---ATTTGC---AT-TCCT-TAT--GTAAATGACCC--TC--------TCTATATTA-AAAT-AC---ACAA-GGGGGGAATCTCAAAAC-GCGCGAT-CTT---A-CCCTAAAGATATTAA-TCATAA----GTCTTCTAATATTCGGAT-GG--TATCA-TC-GTCTGAGCCAAGT----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TTCATTT--CATGTT-T--GCTG------------TC-AAA-ATGTGAC--CAACATG-ATGA-TTTAAATAA-ATAATTG-TACCCTTTTTCTCAGT-TT--TTC--GTCT--GAACGA-CAA-AGTCTTTC----ATGGTTATAGC-GACG--G-AGT-AATTCCACTAC---GCATTCTGA--TTGGACGAT-ACTGTT-C-TAAATTAACGTC---GTACTCAAAGA-TTGAT-TT--AAAC-ATATCACCCAATCAa
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ca-T-AAGAGCAATTTTG-AGTAC---ATA--TTAAT-TT--AGA-----TCGACCAATCA-AAACGTGGAGTGAA-ATTCACTCTGCCGCTGTACATGGAAAGACT-TGTTGTTAAACGAAAACACC--AAA-AAAAATAAAAAATAAAAAA-----------------AA--TA-AAAAANNNNNNNNNNNNNATTGTTATTCAGATGTACTTTTTGTTTACAATTTGAAGGCAT-AGC-T---------AA-C---TCGGCT------GGCGACTCGTCCG-----------------AAAATTTTAAAACCAGTTGGTTTA
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          T-T-AAGAACAATTTTG-AGTAC---ACA--TTAAT-TT--AGA-----TCGACCAATCA-AAACGTGGGGTGAA-ATTCACTCTGCCGCTGTACATGGAAAGACTGTGT-GTTAAACGAAAAC-CC--AAA-AA-------------AAAAAAAAAAAAAAGGGGGGGGG--TGGCAA--------------TTGT--TATTCAGATGTAC-TTTTGTTTACAAT----------------------TTGAAGCATA---GCTA---------ACTCG-CTGGCGAC-----TCGTCCGAAAATTTAAAAACCAGTTGGTTTAcaatttagggtaaaggatctcgtaattcgcaattcctctttcaccggctagaacggcacataagg
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     aCTTTG-AGTAC---GAG--TTAAT-TT--AAAC-ATATCGACCAATCAGAA-TGCGTAGTGAA-ATTCACTCCGTCGCTATACATGGAAAGACT-TGTCGTCAGACGAAAATACT--GAG-AA-------------AAAA-----------------GG--TA-CAA--------------TATT--TAATTAAATATACATGTTGGTCACAATTTGTTAGCAT-AACATAGACA-TTGAA-CATATCTGCCACCCTCAGCTACTTGGCCGGCGATGATAGcaatttagggtaaagatctc
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          attgattcatcgaaccattgatttacA-ATTCAATCCG-----ATTGATGGAAAGACT-TGTCGTCAGATGAAAACACCAAGAG-AA-------------AAAA-----------------GG--TG-CAA--------------TTGT--TATTTAG--ATACATGTTGGTTACAATTTGACAGCAT-AGCATTGTAA-TTGAA-TATATCTGCTATCCACTGCTACTCGGCCGGCTACGATAGTCGTCCGAATATTAGAAA

lowQualScore                  :                                                                                                                     11111111                                                        11                                                  222                                                     222                       333333333333                                                111                                                222222222                              111                           1111                  111   11                                                                                                        4444444444444444444444444444444444        33333333333333                                                 111111                 111111                                                     
lowQualScore                  :                                                             3  22       1    22      333  1  1 1   22            4  00000000    2     2  2  33  77777777                5   3   5 4 11  5      66   0   55 5     5                   5  555    4  4   999      4 9999  4      5 5    5   5  6   000    7  9         99    444444444444  6   6   3  99        7  6 6       3 6  6      555      4         99   99    99 888  6 6 6        666666666      5    77 5          1    000         77         5 5    7777            4     555   00     4  66   55              4  0    0      6          4  2                6   1                99   6  7777777777777777777777777777777777    6   99999999999999    99  3          3                 1     6   3 777777     6     2     666666        2       44    1 1  5     0 1             1   
lowQualScore                  :                                                             .  ..       .    ..      ...  .  . .   ..            .  ........    .     .  .  ..  ........                .   .   . . ..  .      ..   .   .. .     .                   .  ...    .  .   ...      . ....  .      . .    .   .  .   ...    .  .         ..    ............  .   .   .  ..        .  . .       . .  .      ...      .         ..   ..    .. ...  . . .        .........      .    .. .          .    ...         ..         . .    ....            .     ...   ..     .  ..   ..              .  .    .      .          .  .                .   .                ..   .  ..................................    .   ..............    ..  .          .                 .     .   . ......     .     .     ......        .       ..    . .  .     . .             .   
lowQualScore                  :                                                             8  66       9    66      333  9  9 9   66            2  33333333    4     9  9  99  66666666                7   1   0 5 55  0      99   2   88 0     0                   0  444    4  4   888      4 4444  4      7 7    7   7  7   888    3  8         22    222222222222  7   7   2  22        3  7 7       5 7  7      888      2         22   22    22 333  7 7 7        222222222      7    99 7          4    000         99         7 7    3333            4     666   66     4  11   66              3  8    6      7          2  5                7   0                22   7  3333333333333333333333333333333333    7   22222222222222    22  5          5                 0     7   2 888888     7     5     333333        5       77    4 4  0     8 4             0   
consensus                     :                                                      ACAGGGG-CT--TGTCACG-AAAT--ATTTGC---AT-TC-T-TAT--GTAAATGACCCC-TC--------TCTA-TATTA-AA-AT--AC---A-A-GGGGGGAATCTCGAAAC-GCGAGAT-CCTC-TA-CCCTAA--ATTTTAA-TC-CAACT-GGTTTTCTAATTTTCGGAT-GGCTTATCA-TC-GCC--GGCCAAG-T----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAATTTTCTATGTTAT--GCTG------------TC-AAA-TTGTGA--CCAACATGTAT-A-TTTAAATAA-AT-ATTGTA--CCCTTTTTCTCAGTATT--TTC--GTCT--G-ACGA-C-A-AGTCTTTCCA--ATG--TATAGC-GACG--G-AGTGAATTTCACTAC---GCATTCTGA--TTGGTCGAT-A-TGTT-T-AAAATCAACTTTG-AGTAC---GAG--TTAAT-TT--AAAC-ATATCGACCAATCAGAAACGCGTAGTGAA-ATTCACTCCGTCGCTATACATGGAAAGACT-TGTCGTCAGACGAAAACACC--GAG-AA-------------AAAA-----------------GGTA-CAA--------------TATT--TATTTAGATATACATGTTGGTCACAATTTGACAGCAT-AACATAGAAA-TTGAA-CATATCTGCTATCCACAGCTACTCGGCCGGCGACGATAGCCGTCCGAAAATTAGAAAACCAGTTGGNTTA
Reference ( family-5962 )     :                                                      ACAGGGG-CT--TGTCACG-AAAT--ATTTGC---AT-TC-T-TAT--GTAAATGACCCC-TC--------TCTA-TATTA-AA-AT--AC---A-A-GGGGGGAATCTCGAAAC-GCGAGAT-CCTC-TA-CCCTAA--ATTTTAA-TC-CAACT-GGTTTTCTAATTTTCGGAT-GGCTTATCA-TC-GCC--GGCCAAG-T----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAATTTTCTATGTTAT--GCTG------------TC-AAA-TTGTGA--CCAACATGTAT-A-TTTAAATAA-AT-ATTGTA--CCCTTTTTCTCAGTATT--TTC--GTCT--G-ACGA-C-A-AGTCTTTCCA--ATG--TATAGC-GACG--G-AGTGAATTTCACTAC---GCATTCTGA--TTGGTCGAT-A-TGTT-T-AAAATCAACTTTG-AGTAC---GAG--TTAAT-TT--AAAC-ATATCGACCAATCAGAAACGCGTAGTGAA-ATTCACTCCGTCGCTATACATGGAAAGACT-TGTCGTCAGACGAAAACACC--GAG-AA-------------AAAA-----------------GGTA-CAA--------------TATT--TATTTAGATATACATGTTGGTCACAATTTGACAGCAT-AACATAGAAA-TTGAA-CATATCTGCTACCCACAGCTACTCGGCCGGCGACGATAGCCGTCCGAAAATTAGAAAACCAGTTGGNTTA
gi|1                          :                                                          GGG-CT--TGTC-CG-AAAT--ATT-GC---AT-TC-T-TAT--G-AAATGACCC--TC--------TCTA-TATTA-AATAC--AC---A-A-GGGG--AATCTCGAAAC-GCGAGAT-C-TC-TA-CCCTAA--ATTTTAA-TG-CAACT-GGTTTTCTAATTTTCGGAT-GGCT--TCA-TC-GCC---GCCAAG-T----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAA-TTTCTATGTTAT---CTG------------TC-AAA-GTG-GA--CCAACATG-AT-A-TTTAAATAATAT-ATTGTT--ACCTTTTTCTCAGTATT--TTC--GTCT--G---GA-C-A-AGTC--TCCA--GTA--TA-AGC-GACG--G-AGTGAATTCC-CTAC---GCATTCTGA--TT-GTCGAT-G-TCTT----AAATCAACTTTG-AGTAC---GAG--TTAATATA--AAAC-ATATCGACCAATCAGAGATGCGTAGTGAATTTTCACTCCGTCACTATACATGGAAA-ACT-TGTCGTCAGACGAAAATACT--GAGAAA-------------AAAA-----------------GGTA-CAA--------------TATT--TA-TTAAATATACATGTTGGTC-CAA-TTGACAGCATAAACATAGAAA-TTGAA-CATATCTGCTA-CCACAGCTACTTGGCC-GCGATGATAGCCATCCGAAAA-TAGAAAACCAGTTGCATTA
gi|10                         :                                                    caACAGGTGTCTAATGTCACG-AAGC--ATTTGC---AT-TC-T-TATATGTAAATGACCCC-CCCCCCCCCTTCCA-TATTA-AA-AT--AC-------------------------GCGAGAT-CCTC-TA-CCCTAA--ATTTTAA-AC-CAACT-GTTTTTCTAATTTTCGGAT-GAC-TATCT-TC-ACA--GGCTGAG-T----AG-CTCAGG-C-TAGC-AGA-Taaattaggggtagaggatctcgcgttccgagattccccccttgtgatttaaattagagaagtcatttacataagaatgcaaatatttcgtgacaacccctgt
gi|11                         :                                                         GGGG-CT--CGTCACG-AAAT--ATTTGC---AC-TC-T-TAT--GTAAATGATCCC-TC--------TCTA-TATCA-AA-AT--AC---ACA-AGGGGGAATCTC
gi|11                         :                                                      ACAGGGG-CT--CGTCACG-AAAT--ATTTGC---AT-TC-T-TAT--GTAAATGATCCC-TC--------TCTA-TATTA-AA-AT--AC---A-C-AAGGAGATTCCCcttgtgtattttaatatagagagggatcatttacataagaatgcaaatatttcgtgacgagcccctgt
gi|12                         :                                                                                                                                                                         ggggctcgtcacgaaatatttgcactcttatgtaaatgatccctctctatatcaaaatacacaaggTATCA-TC-GCC--GGCCAAG-T----AG-CTGTGG-G-TAGC-AGC-TA-TGT---TCAATTT-CTATGTTAT--GCTG------------TC-AAA-TTGTGA--CCAACATGTAT-A-TTTAAATAA-AT-ATTGTAGTACTTTTTCCTCAGTATT--TTC--GTCT--G-ACGA-C-A-AGTCTT
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                       cTCCA---TG--TATAGC-GACG--G-AGTGAATTTCCCTAC---GCATTCTGA--TTGGTCG---A-TGTT-T--AAATCAACTTTG-AGTAC---GAG--TTAAT-AT--AAAC-ATATCGACCAATCAGAA
gi|14                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                G--TATAGC-GACG--G-AGTGAATTTCACTAC---GCATTCTCA--TTGGTCAAT-A-TGTT-T--AAATCAACTTTG-AGTAC---GAG--TTAAT-TT--AAACAATATCGACCATTCAGAAtgc
gi|15                         :                                                      ACAGGGGACT--TGTAACG-AAAC--ATCTG----ATGTC-A-TGT--GTAAATGACCCCTTC--------ACTA-TATTtgt
gi|16                         :                 cttgtgaacatgttatccatatctatatcaaaatacaccAGGGG-CT--TGT------AAT-------C----C-TC-TGTAT--GGCAATGAACCC-CC--------TCTA-TAATA-AA-AT--AT---A-g
gi|16                         :                                                                                          T-TC-T-TAT--GTAAATGACCCC-TT--------TCTG-TATAA-AA-AT--AC---cgtatttttatacagaaaggggtcatttacataagaa
gi|17                         : aggggcttgtaatcctctgtatggcaatgaaccccctctataataaaatatacACAGGAG-CT--TGTTACG-AAAC--ATTTGC---GT-TC-T-TAT--GTAACGGACCCC-GC--------TCTG-TA
gi|18                         :                                   ctatatcaaaatacactagtCAGGGG-CT---GTCA---AAAT--ATTTGC---AT-TC-T-TAT--GTAAATGACCCC-TC--------TCTA-TATTA-A------AC---A-A-GAGAGg
gi|19                         :                                                      ACAGGG--CT--TGTCACG-AAAT--ATTTGC---AT-TC-T-TAT--GTAATTGACCCC-TC--------TCTA-TA-TA-AA-AT--A
gi|2                          :                                                      ACAGGGG-CT--TGTCACG-AAAT--ATTTGCGCAAT-TC-T-TAT--GTAAATGACCCC-TC--------TCTA-TATTTTAA-AT--AC---A-A-GGGGGGAATCTCGAAAC-GCG-GAT-CCTC-TACCCCTAA--ATTTTAA-TC-CAACT-GGTTTTCTAATTTTCAGAT-GGCTTATCA-TC-ACC--GGCCAAG-T----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TCAATTTTCTATGTTAT--GCTG------------TC-AAA-TTGTGA---CAACATGTAT-A-TTTAAATAA-AT-ATTGTA--CCTTTTTTCTCAGTATT--TTC--GTCT--G-ACGA-C-A-AGTCTTTCCATTATG--TATAGC-GACG--G-AGTGAATTTCACTAC---GCATTCTGA--TTGGTCGAT-A-TGTT-TAAAAATCAACTTTGAAGTAC---GAG--TTAAT-TT--AAAC-ATATCGACCAATCAGAAATGCGTAGTGAA-ATTCACTCCGTCG-TATACATGGAAAGACC-TGTCGTCAGACGAAAATACT--GAG-AA-------------AAAA-----------------GGTA-CAA--------------TATT--TATTTAAATATACATGTTGGTCACAATTTGACAGCAT-AACATAGAAATTTGAA-CATAT-TGCTATCCACAGCTACTTGGCCGGCGATGATAGCCATC--AAAATTAGAAAACCAGTTGGATTA
gi|20                         :                                                       CAGGAG-CT--TCTCACA-AAGC--ATTTGC---AT-TC-T-TAT--GTAAATTACCC---C--------TCTG-TATTA-AA-AT--
gi|21                         :                                                           GG-CT--TGTCACG-AAAT--ATTTGC---AT-TC-T-TAG--GTAAATG-----------------------TTA-AA-AT--AC---A-
gi|22                         :                                                         GGAA-CT--TGTAACG-AACC--ATCTGA---TT-TC-A-TGT--GTAAATGACCCC-TC--------ATTA-Tgggccc
gi|23                         :                                                      ACAGGGG-CT--TGCCACG-AAAC--ATTTGC---AT-TC-T-TAT--GTAAATGGCCCC-T
gi|24                         :                                                      ACAGGGG-CT--TGTCACG-AAAT--ATTTGC---
gi|25                         :                                   tttatatagcgccctatacACAGTGG-CT--TGTCACG-AAAT--ATCTGC---AT-TC-T-TAT--ATAAAT
gi|26                         :                                                     cACAGGGG-CT--TGTCACG-AAAC--ATTTGT---AT-TC-T-TTT--GCAAAT
gi|27                         :                                                      ACAGGGG-CT--TGTCACG-AA----------------------AT--GTAAATGACCCC-TC--------TC
gi|3                          :                                                      tgcGGCG-CT--TGTCACG-AAAT--ATATGC---AT-T--T-TAT--GTAAATGACCCC-TC--------TCTATTATTA-AA-TA--AC---A-A---GGGGAA-CTCCAAAC-GCGCGATCCCTCTTA-CCCTTA--AATTTAA-TC-CATAT-GGTTTTTTACTAT--GGAT-GGC-TATCA-TCTGTC--GGCCAAG-C----AGCCTGTGG-GTTAGC-AGATTA-TGTTA-TCAA-TTTCTATGTTATTGGCTG------------TC-AAATTTGTGA--CCAA-ATGTAT-ATTTTAAAT-A-AT-ATTGTA--CCCTTTT--TCAGTATT--TTC--GTCT--G-ACGACC-A-AGTCTTTCT---ATGATTATAGCGGACGATG-AGGGAATTTCACTAC---GCATTCTGA--TTGGACGAT-A-TGTT-T-AAATTTAAC-TCG-GTTACTCAAAGTTTTGAT-TTCAAAAC-ATATCGACCAAT
gi|4                          :                                                       aggtGG-CT--TGTCACGTAAATTAGTTGGC---AT--C-G-TAT--GTAAACGACCCCGTCA-------TCCA-TAGTA-AA-AT--ACTACA-ATGGGGGGAATCTCGAAACGGCGAAGT-TCT--TA-CCCTAA--ATTAAAACTC-CAACTGGGTTTCCTAAGTTCGGGATAGGCTGATTATTC-GCC--TGGCAAG-TTGAGAG-CTGTGGTG-AGGCAAGA-TAGTGTGGGTCAATTGCGTGTGTTAT--G-TGGGGGCGGCGGGTTCGAAG-TTGGGAGGCCAACATTTAT-A-TT---ATTA-AT-A-TGTA---GCTTTTCCTCAGTATTGATTCGGGTCTTGG-A--A-C-AGAG--TTTCCA----G--TATAGC-GACG--GAAGTGAATTTAACTATCGGGCTTACTGGATTTGGTCGATCA-TGCTGT-TAAATAAATT
gi|5                          :                                                           GG-CT--TGTCACG-AAA---ATTTGC---AT-TCCT-TAT--GTAAATGACCC--TC--------TCTA-TATTA-AA-ATACAC---A-A-GGGGGGAATCTCAAAAC-GCGCGAT-C--T-TA-CCCTAAAGATATTAA-TCATAA----GTCTTCTAATATTCGGAT-GG--TATCA-TC-GTCTGAGCCAAG-T----AG-CTGTGG-G-TAGC-AGA-TA-TGT---TTCATTT--CATGTT-T--GCTG------------TC-AAA-ATGTGA--CCAACATG-ATGA-TTTAAATAA-ATAATTGTA--CCCTTTTTCTCAGT-TT--TTC--GTCT--GAACGA-CAA-AGTCTTTC----ATGGTTATAGC-GACG--G-AGT-AATTCCACTAC---GCATTCTGA--TTGGACGAT-ACTGTT-C-TAAATTAACGTC---GTACTCAAAGA-TTGAT-TT--AAAC-ATATCACCCAATCAa
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ca-T-AAGAGCAATTTTG-AGTAC---ATA--TTAAT-TT--AGA-----TCGACCAATCA-AAACGTGGAGTGAA-ATTCACTCTGCCGCTGTACATGGAAAGACT-TGTTGTTAAACGAAAACACC--AAA-AAAAATAAAAAATAAAAAA-----------------AATA-AAAAANNNNNNNNNNNNNATTGTTATTCAGATGTACTTTTTGTTTACAATTTGAAGGCAT-AGC-T---------AA-C---TCGGCT------GGCGACTCGTCCG-----------------AAAATTTTAAAACCAGTTGGTTTA
gi|6                          :                                                                                                                                                          GAGGAATTGCGAATT-ACGAGAT-CCTT-TA-CCCTAA--ATTGTAA-AC-CAACT-GGTTTTAAAATTTTCGGAC-GA------G-TC-GCC--AGCCGAGTT----AG-CTATGcaatttagggtaaaggatctcgtaattcgcaattcctctttcaccggctagaacggcacataagg
gi|7                          :                                                                                                                                                                                                                                                                                                                taagagcaattttgagtacatattaatttagatcgaccaatcaaaacgtggagtgaaattcactctgccgctgtacatggaaagacttgttgttaaacgaaaacaccaaaaaaaataaaaaataaaaaaaataaaaaannnnnnnnnnnnnattgttattcagatgtactttttgtttacaatttgaaggT-T-AAGAACAATTTTG-AGTAC---ACA--TTAAT-TT--AGA-----TCGACCAATCA-AAACGTGGGGTGAA-ATTCACTCTGCCGCTGTACATGGAAAGACTGTGT-GTTAAACGAAAAC-CC--AAA-AA-------------AAAAAAAAAAAAAAGGGGGGGGGTGGCAA--------------TTGT--TATTCAGATGTAC-TTTTGTTTACAAT----------------------TTGAAGCATA---GCTA---------ACTCG-CTGGCGAC-----TCGTCCGAAAATTTAAAAACCAGTTGGTTTAtttcaccggctagaacggcacataagg
gi|7                          :                                                                                                                                                                           aGAGAT-CTT--TA-CCCTAA--ATTGTAA-AC-CAACT-GGTTTTTAAATTTTCGGAC-GA------G-TC-GCC--AGCGAGT-T----AG-CTATGcaatttagggtaaagatctc
gi|8                          :                                                                                                                                                                                                                                                                                                                                        attaagaacaattttgagtacacattaatttagatcgaccaatcaaaacgtggggtgaaattcactctgccgctgtacatggaaagactgtgtgttaaacgaaaacccaaaaaaaaaaaaaaaaaaagggggggggtggcaattgttattcagatgtacttttgtttacaatttgaagCTTTG-AGTAC---GAG--TTAAT-TT--AAAC-ATATCGACCAATCAGAA-TGCGTAGTGAA-ATTCACTCCGTCGCTATACATGGAAAGACT-TGTCGTCAGACGAAAATACT--GAG-AA-------------AAAA-----------------GGTA-CAA--------------TATT--TAATTAAATATACATGTTGGTCACAATTTGTTAGCAT-AACATAGACA-TTGAA-CATATCTGCCACCCTCAGCTACTTGGCCGGCGATGATAG
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              attgattcatcgaaccattgatttacA-ATTCAATCCG-----ATTGATGGAAAGACT-TGTCGTCAGATGAAAACACCAAGAG-AA-------------AAAA-----------------GGTG-CAA--------------TTGT--TATTTAG--ATACATGTTGGTTACAATTTGACAGCAT-AGCATTGTAA-TTGAA-TATATCTGCTATCCACTGCTACTCGGCCGGCTACGATAGTCGTCCGAATATTAGAAA