lowQualScore : 1111111111111
lowQualScore : 1 33 77777777 1 88888888 1 4 11 8888888888888 4 2222 777 5555 2 2 11 1 1 66666666666666 1 11 6666 11 44 2 1 33 1 1 444 1 22 11 3333333 2 11 2222 11111 1 111 1111111 55555555555 2222222222 11 11 11 44444444444444444 11111111 11111 111 2222 111111 111 66666666666666666666666666666666666666666666666666666666666 333333333 111111 4444444444 33333333 111111 1111 111111 222 4444444444444444 2222222222 111111111 2222222 11 55555555555555555555555555555555555555555555555555555 22222 111 4444444444 5555555555555555555555555 444444
lowQualScore : 6 7 22 22222222 7 99999999 6 6 7 0 22 6 8888888888888 0 9999 000 2222 4 0 7 88 7 0 1 44444444444444 3 3 3 3 0 9 33 7777 2 77 9 77 22 1 0 6 66 3 0 2 5 999 0 44 11 8 7 4444444 0 8 2 77 4 4 4 3 1111 6 6 99 44444 3 111 5 77 5 7777777 1 00000000000 4444444444 5 99 33 77 1 6 22 44444444444444444 44444444 00000 666 6 1111 99 6 999999 111 99999999999999999999999999999999999999999999999999999999999 6 000000000 6 111111 6 5555555555 99 6 5 77 5 00000000 555555 0000 999999 5 000 4 4 1111111111111111 7 7 3 9999999999 777777777 4 7777777 8 5 5 2 888 66 5 44 11111111111111111111111111111111111111111111111111111 5 5 66666 999 5555555555 2 4 9999999999999999999999999 4 4 3 3 55 3 44 3 44 333333 66 5 5
lowQualScore : . . .. ........ . ........ . . . . .. . ............. . .... ... .... . . . .. . . . .............. . . . . . . .. .... . .. . .. .. . . . .. . . . . ... . .. .. . . ....... . . . .. . . . . .... . . .. ..... . ... . .. . ....... . ........... .......... . .. .. .. . . .. ................. ........ ..... ... . .... .. . ...... ... ........................................................... . ......... . ...... . .......... .. . . .. . ........ ...... .... ...... . ... . . ................ . . . .......... ......... . ....... . . . . ... .. . .. ..................................................... . . ..... ... .......... . . ......................... . . . . .. . .. . .. ...... .. . .
lowQualScore : 0 0 00 00000000 0 00000000 0 0 0 0 00 0 0000000000000 0 0000 000 0000 0 0 5 55 3 0 5 22222222222222 2 2 2 2 2 2 88 0000 2 00 8 88 88 5 5 0 00 2 0 2 5 555 0 22 00 0 8 4444444 8 0 8 66 0 0 0 7 8888 7 7 22 88888 3 777 7 99 7 9999999 7 11111111111 3333333333 7 33 66 99 7 7 33 99999999999999999 99999999 11111 333 7 2222 22 7 222222 777 00000000000000000000000000000000000000000000000000000000000 7 333333333 7 888888 7 2222222222 22 7 7 99 7 99999999 111111 6666 444444 0 222 0 0 7777777777777777 3 3 6 6666666666 888888888 4 6666666 2 0 0 0 888 99 0 00 99999999999999999999999999999999999999999999999999999 0 0 22222 000 2222222222 3 4 8888888888888888888888888 0 0 6 6 00 3 66 3 66 000000 99 0 0
consensus : NACCATGTTTACAATGGTATTCCCGAATAGCTTGTTTGTTCAGATTTTTACAAACGATGCATTGATACTAACAGATTGATCTA-ATTCTTTTAGGAATTTCTGACATAATTCAACTGTTGTGGCCACATCGTTAATTTTTTGGATCCGCCTACCGTTCCTACTAANTTTCGACGGTTTGCGATTTTTGGTGTTTC-AANAT-----GTGACNTT-GTAATTGATTTAGAAATGTTTTCCACTTTCA--TATT----AGAAAATAATTTACAGAA--TAA-CCGATTATATCATT-TTCTACATGCATGCAAGTTTTCATTGAATA-TTGTA-GCCTTGCACC--TAT-TATGTAC----CTCGTCCGGAATT-ACCCGACTACAAGGAAAACGG-TG-G-GGTAATTCCGGACA-GCGTAAACAAA--AAC-CAT-TA--TTT----CCA-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAAT--TAT---------ATTCA-CTTAACT-TTT--CTAGG--TTCTCTTAGTCTTTTNATACCG----CAA-T-TCCCAA-AACT-----AG-AAAA---T-ATTTACGCTT-GTGAA--TTGAGTTT--AG-A------TT---TTTTCC-T-TT--CTTC---------G---TCT-CC-------------CTTTT-NA--T-----T-TTCCC-----G---CA-AA--A---T-AAGCA-TGCCAAAG-TA--C-AAA-GG--TCC-AAAGT-TT----CAAT-A--TCGAAT----TC------AATA-T-TTCAAT-CGG-AATAC-T-------TC--G--GAA-TT-T-TGA---TA-A---AAACA---------ATG-A---TAT-AAGAAAA-C-AAAG---A--CA-ACAG-AAG----------------A----T---C-AAAA-A-----AA-C-----A-N---CGA-CTTTA-T-TT--ATAGATA-TGTCA--------CGGANAA-AGGG-------NAAG----TA---GTCGTATTTCATAAGAA-G-T-C-TT--GAACT-GTCCG--GA-ATT--ACCCGC-TG-TCCGGAATT--AC-CCGGA-TATC
Reference ( gi|2 ) : AACTATGTTTTCAAATGTAT--CAGAA-AGCTAGTTTGT---GACGATTACAAACGATGTATTAATACAAACAGATTGATCTATATCTTTTTAGGAATCT----TAT------ACTGTTGT-GCCACTTTCTTAA---TTTGGATCCGCCTACCG-TATTATTAATTTTCGAT-GTTTGAGATTTTTGGTGTTTC-AATAT-----TTG-CAT--GTAATTGATTTAGAAATGTTTTTCACTTTCA--TATTTTCGAAAAATTAATTTACAAAAAATAAACCGATTGTG-CATT-TTCTATATGCATACAAGTTTTCATC--ATA-TTGTAAGCCTTGCACC--TAT-TATATAT----TTCGTCCGGAATT-ACCCGACTACAAGGAAATCGG-AG-G-GGTAATTCCGGACA-GCGTGAACAAA--AAC-CAT-TA--TTC----CCA-TTG---ATTT-AGACGTTT--AAT-CACTTAAT--CAAACT--G-ACAATAATAT---------GTTCA-CTTAAC--TTT--CTAGG--TTCTCTTAGTCTTTTCATACCG----CAA-TTTCCCAA-AACT-----AA-AAAA---T-ATTTACGCTT-GTGAA--TTGAGTTT--AG-A------TT---TTTTCC---TT--CTTC---------G---TCT-CC-------------CGTTT-GA--T-----T-TTCCC-----G---CA-AA--A---T-AAGCATTGCCAAAGCTA--C-AAA-GG--TCC-AAAGT-TT----CAAT-A--TTGAAT----TC------AATA-T-TGCAAT-CGG-AATAC-TG------TT--A--GAA-TT-T-TGA---TA-A---AAACA---------ATG-A---TA--AAGGAAA-C-AAGG---A--CA-ACAT-AAG----------------A----T---C-AAAA-A-----AA-C-----A-G---CGA-CTTTA-TATT--ATAGATATTGTCA--------AGGAAAA-AGGG-------TAAG----T----GTCG-ATTTCATAAGAA-G-T-C-TT--GAACT-GTCCG--GA-ATT--ACCC-C-TGATCCGGAATT--AC-CCGGA-TATC
gi|1 : ACCATGTTTACAATGGTATTCCCGAATAGCTTGTTTGTTCAGATTTTTACAAACGATGCATTGATACTAACAGATTGATCTA-ATTCTTTTAGGAATTTCTGACATAATTCAACTGTTGTGGCCACATCGTTAATTTTTTGGATCCGCCTACCGTTCCTATTAAATTTCGACGGTTTG-GA--TTTGGTGTTTCAAAAAT-----GTGACTT--GTAA-TGATTTAG-AATATTTT--GTTTTCATCTATTATAGAAAA--TA--TTAC--AGACTAACTCGATTATA-T-TT-TTATACATGCATGCAAG-TTTCATTGAATAGTTGTAGCCTTTGCACCAACATGTATCTATGGTACTCGTCCGGAA-T-ACCCGACTACAAGGAAA-CGGTAGTGTGGTAATTTCGGACATGCATGAA-ACA--AGC-CAT-TA--TTT----CCAGTTG---ATTT-AGACGTTT--AATCCACTT--T--TCAATT--G-ACAGT--TAT---------ATTCAGCTGAACTTTTT--CTAAGGTTTCTCTTAGT-TTTTAGTATCGGGCATAA-CATCAGAATAACTTTCTCAA----------ATCT--GCTT-GTGGATTTTGAGTTT--AGCAAGTTCCTT---TTTTCT---GT--CTCT---------GCGTTCT-CTGACTTAACATAAACTTTT-GC--T-----TCTTCCCACTCAG---CA-AA--ACGCT-AAGCA-TGATAAAG-TA--C-AAA-GG--TTT-AAA---TT----CAAT-A--TTGAAT----TC------AATA-TATTCAAT---G-GATAC-T-------TTCAA--GAA-TTATATGAGCTTA-T---AAACAACCAGCATGATG-A---TAG-AACGATC-C-AAAGAATA--CT-ACAT-AAGTTGAGCTTAGTAAACAA----TTGAC-AAGA-AACTCCAA-CAAGAAA-G----GA-CTTTA-TA----ATAGATAATGTCA--------CAGAGAA-AGGGAAA----TTAG----T-----TCGTATTTCATAAGAA-G-T-CTTT--GAACT-G-CCG--GA-ATT--ACCCGC-TG-TCCGGAATTTAACGCCGGA--ATC
gi|3 : ACTAATTTTCGAT-GTTTGCGATTTT--GTGTTTC-AACATATGGTTTA-TATT-GTAATTGATTTAGAAATGTTTTCCACTTTCA--AATT----AGAAACAATTTTACAGAA--TAAACT-ATTATATCATTCTTCTACATGTATGCAAGTTTTCATTGAATA-TTGTA-GCCTTGCACC--TAT-AACGTA-----CTCATCCAGAATTAACCCGACTACAAGGAAAACGG-TG-G-GGTAATTCCGGGCA-GCATAAACAAA--CCCGCAT-T---TCCTGAACCA-TTG---ATTA-AGATGTTT--CAT-CACTT-GT--CCAACTG-G-AAAAT-TTAT---------ATTTA-CTTAAC--TTT--T--GG--TTCTTTTAGACTTTTGATACCG-------------CAA-AACT-----AG-AAAA---T-ATTTACGCTT-GTG-A--TTAAGTGT--AG-A------TT---TTTCCCTT-TT--CTTC---------G---TCT-GC-------------CTTTTAAA--T-----T-TTCCC-----G---CA-AC--A---T-AAACA-TG-CAAAG-TA--C-AAA-GG--T-C-AAAG--TT----CAATAA--CTGACT----TC------AGTA-T-TTTATT-CGG-AATAC-T-------TC--G--GAA-AT-T-TGA---T--A---CGACA---------ATG-AT--TT--AAGAAAA-CAAAAG---A--TA-TTAG-AAG----------------A----T---T-TAAA-A-----AA-T-----------CAA-ATTCA-T-TT--ATAAATA-TGTCATAAACCCTGGGAAA-----G-------TAGA----T----GT---ATTTCATAAGAA-G-T-C-TT--GAACT-GTCCG--GA-ATT--ACCcc
gi|4 : TTGGTGTTTC-AACAT-----GTG--ATTTGTAATTGATTTAGAAATGTTTT-CACTTTTA--TATT----AGAAAATAATTTACAAAA--TAA-CCAATTATATCATT-TTCTATATGCATACAAG------------A-TTGTA-GCCTTGCACC--TAT-TATGTAC----TT-GTCCGGAATT-ACCCGACTACAAGGAAAACGG-TG-G-GGTAATTTCGTACA-GCATAAACAAA----C-CTT-TA--TTT----CCA-TTG---ATAT-AGACATTT--AAT-CACTTATT--CAA-CT--GGAAAAT--TAT---------ATTCA-CTTAAC--TTTTTCTAGG--TTCCTTTAGTATTTTAAT-CCG----CAA----------AACT-----AGGAAAA---T-AT--AC-CGT-TTGAT--TTTA-TTT--AG-A------TT---TTTTCT---TTTTCTTG---------G---TCTGCC-------------TTTTT-AA--A-----T-TTCCC-----A---CA-AATAA---TTAAGCAT-GC--AAGGTA--C-AAA-G---TCC-AAAGT-TC----AAATGA----GAAT-----C------AATA-T-T-CAAT-CGA-AATAC-T-------TC--G--GAA-TT-T-TGA---GT-A---AAACA---------ATG-A---TATTAAGAAAAGC-AAAG---A--CA-ATAG-AAG----------------A----T---CCAAAACA-----GA-C-----A-T---CGA-CTCTA-CTTA--ATAGAT-CTATCA--------CAGACAA-TGGG-------AAAG----TA---GTTGTATTTCATACGAA-G-T-C-TT--GAACT-GTCCA--GA-ATT--ACCCGC-TG-TCCGGAATT--AC-CCGGA-TATC
gi|11 : GGTGTTTC-AAAAT-----GTGACTT--GTAATTGATT-AGAA-TTTTTTTCACTTTTA--TATT----AGAAAATAATTTACAGAA--TAA-CCAATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGT-AGCCTTGCACC--TAT-TATGTA-----CTCGTCCGGAATT-ACCTAACTc
gi|10 : TGTA-GCCTTGCACC--TAT-TATGTAC----T-CGTCGGAAATT-ACCCGACTACGAGGAAAACGG-TG-G-GACAATTCCGGACA-GCATAAAC--A--AAC-CAT-CA--TTT----GCA-TTG---ATTT-AGACATTT--GAT-CACTTATT--C-AACTA-G-GAAAT-TTAC---------ATTCA-CTCAACT-TTT--CTAGG--CTCTCTTAGTtg
gi|6 : G-GG-G-GGTAATTCCGGACA--CATAAACAA-----C-CAT-TAATTTC----CCA-TTG---ATTT-AGACGTTT--A-T-CACTTATT--CAAACTTTG-AAAATT-TAT---------ATTCA-CTTAAC--TTT--CTAGG--TTTT--------------ACCG----CAA-----------ACT-----AG-AAAA---TTATTTACGCTT-GTGAA--TTGAGTTT--AG-A------TT---TTTTTCTTTTT--CTTC---------G---TCT-TA-------------CCTTT-AAATT-----T-TTCCC-----G---GAGAA--A---T-AAGCA-TG-CAAAG-TA--CAAAA-GG--TCCAAAAG---T----CAAT-AATTCAAAT----TCA-----AATATT-TTCAAT-CGG--ATAC-TT------TC--G--GAATTT-T-TGA---T-------AACA---------ATGAA---TT--AAGAAAA-C-AAAG---AATCA-ACAGAAAG----------------A----TC--C-AAAA-A-----AA-C-----ATC---CGA-CTTTACTA----ACAGATA--GTCAAC------AGTAGAA-AGGG-------AATG----TA---GTTGTATTTCATAAGAA-GTT-C-TT--GAAC--GTACG--GA-ATTAAACCCGC-TG-TCCG
gi|5 : aacgtG-A-GATAATTCCGGACA-GCATAACCAAAGAAAT-CATGTA--TTT----CAAGTTGTAAATTTTAGACGTTTTGAAT-CACTTGATTTCAATCT--G-GAAA-AATATACATGTCGTGTTCA-CTTAAC--TTTT-CTAG---TTCTCTTAGTCTTTTC-TACCG----CAACTTTCCCAA-AACT-----AG-AAAAAAGT-ATGACCGCTTTGTGAT--TTGAGTTTTAGG-A------TTCATTTTTTC---TT--TTTCTTTTGTTCTG---TC--CT-------------CATCT-TA--TAAGTAT-TTCCCT----GTCCCA-AA--A---T-AAGCA-TGTCAAAAGTAACT-AAACGGACTCC-AAAGTATTAAGATAAT-A--TAAACT----TCCAACTTAGTA-T---CAATGCGG-AATTA-AG------TT--ACTGAA-TT-T-
gi|4 : t-G-GGTAATTCCGGACA-GCGcaaatattttcgagaagtcccagacatgcatactttcgaatttgataattaaaacatgatataagaacaagacaacctaggaaagcgcaaaaaaggagacacgacttcgtatttagtagatattcacagaaaaaaggcgctgtttacgtcttcgttgttttcataagaaatactttgaaactggtccggtgacattaccc
gi|8 : ttggtgtttcaacatgtgatttgtaattgatttagaaatgttttcacttttatattagaaaataatttacaaaataaccaattatatcattttctatatgcatacaagattgtagccttgcacctattatgtacttgtccggaattacccgactacaaggaaaacggtggggtaatttcgtacagcataaacaaacctttatttccattgatatagacatttaatcacttattcaactggaaaattatattcacttaactttttctaggttcctttagtattttaatccgcaaaactaggaaaatataccgtttgattttatttagattttttctttttcttggtctgcctttttaaatttcccacaaataattaagcatgcaaggtacaaagtccaaagttcaaatgagaatcaatattcaatcgaaatacttcggaattttgagtaaaacaatgatattaagaaaagcaaagacaatagaagatccaaaacagacatcgactctacttaatagatctatcacagacaatgggaaagtagttgtatttcatacgaagtcttgaactgtccagaattacc-G-GGTAATACCGGACA-GCGTAAggatatcc
gi|9 : aaggtccaaagttcaataaatggtgtcaatatttcatttggaatacatcggaatttcgaaaagacaatgatataataaaaccaggacaacagaagatccgaaaaaacattgaatttatttatagatagtctcagacaaagggaaagcagatgcatttgataagaagtc-G-GGTAATTCCGGACA-GCGaatgtccagaattacccgatatcgg
gi|14 : ttattttcttatcggtaatacttcggaaattattgatttaaaacaatgaatataaagaaaagaaagacatacagaagatcaaaaaaaacacttcgagctttattttaagatatgtcacatgaaaatagggcaagttagtcgtatttcataagaaagtcttgaactgtccggaattac-G-GGTAATTCCGGACA-GCGggattatcc
gi|13 : tatttacttaatagacaaagggaaagtagtcatatttcataagaaatctggaactgtccggaattaccT-AGACGTTT--AAT-CACTTAAT--C-AACTG-G-ACAGT-ATAT---------GTTCA-CTTAACT-TTT--CTAGG--TTCTCCTAGTCTTTCCATACCG----CAA-TTTCCCAA-AACT-----AG-AAAA---T-Aggat
gi|7 : CCAA-AACT-----AG-AAAA---T-ATT-ACGCTT-GTGG---TTGAGTTT--AG-A------TT---TTTTTCGTTTT--CTTA---------G---TCT-GC-------------CTTTT-CA--T-----T-TTCCC-----A---CA-AA--A---T-AAGCAT-GC-AAAG-TA--C-AAA-GG--TCC-AAAGT-TCAA--TAAT-A--TTGAAT----TC------AGTA-T-TTCAAT-CGG-AATAC-T-------TC--G--GAA-TT-T-TGA---T--A---AAACA---------ATG-A---TAT-AAGAAAA-C-AAAG---A--CA-ACAG-AAG----------------A----T---C-CAAA-A-----AA-C-----A-T---CGA-CTTTA-T-TT--ATAGATA-TGTCA--------CAGAAAA-AGGG-------TAAG----TA---GTCGTATTTCATAAGAA-G-T-C-TT--GAACT-GTCCG--GA-ATT--ACCCGC-TG-TCTGGAATT--AC-CCGGA-TATC
gi|8 : AA-GG--TCC-AAAG--TT----CAAT-A-----AATGGTGTC------AATA-T-TTCATT-TGG-AATAC--A------TC--G--GAA-TT-T-CGA----A-A---AGACA---------ATG-A---TAT-AATAAAA-C-CAGG---A--CA-ACAG-AAG----------------A----TC--C-GAAA-A-----AA-C-----A-T---TGA-ATTTA-T-TT--ATAGATAGTCTCA----------GACAA-AGGG-------AAAGCAGAT----GC---ATTTGATAAGAA-G-T-C-TT--ACGCT-GTCCG--GT-ATT--ACCCAA-TG-TCCAGAATT--AC-CC-GA-TATCc
gi|16 : -A--TTGAAT----TC------AATA-T-TTCAAT-CGG-AATACATGTACACTTT--A--GAA-TT-T-TGA---TA-A---AAgg
gi|9 : AT-CGGTAATAC-T-------TC--G--GAAATTAT-TGA---TTTA---AAACA---------ATG-AATATA--AAGAAAA-G-AAAG---A--CATACAG-AAG----------------A----T---C-AAAA-A-----AAAC-----A-CTT-CGAGCTTTA-TTTT--A-AGATAT-GTCAC-------ATGAAAATAGGG-------CAAG----TTA--GTCGTATTTCATAAGAAAG-T-C-TT--GAACT-GTCCG--GA-ATT--ACCG-C-TG-TCCGGAATT--AC-CCGGATTATCca
gi|18 : ttattttcttAT-CGA-AATAC-T-------TC--G--GAA-TT-T-TGA---T--G---AGACA---------ATG-A---c
gi|5 : ATAC-T-------TT--C--GAA-TT-T--GA---TA-ATTAAAACA----------TG-A---TAT-AAG--AA-C-AAG----A--CA-ACCT-AGG----------------AAAGCG---C-AAAA-A-----AG-G-----A-GACACGA-CTTCG-TATTTAGTAGATATT--CA--------CAGAAAA-AAGGCGCTGTTTACG----TCTTCGTTG-TTTTCATAAGAA-A-TAC-TTTGAAACTGGTCCGGTGACATT--ACCC-
gi|14 : tgagataattccggacagcataaccaaagaaatcatgtatttcaagttgtaaattttagacgttttgaatcacttgatttcaatctggaaaaatatacatgtcgtgttcacttaacttttctagttctcttagtcttttctaccgcaactttcccaaaactagaaaaaagtatgaccgctttgtgatttgagttttaggattcattttttctttttcttttgttctgtcctcatcttataagtatttccctgtcccaaaataagcatgtcaaaagtaactaaacggactccaaagtattaagataatataaacttccaacttagtatcaatgcggaattaagttactgaatttcaaatattttcgagaagtcccagacatgcGACAA-AGGG-------AAAG----TA---GTCATATTTCATAAGAA-A-T-C-TG--GAACT-GTCCG--GA-ATT--ACCCGC-TG-TCCGGAATT--AC-CCGGA-
gi|15 : tatttacttaataAG----TA---GTCGTATTTCATAAGAA-G-T-C-TT--GAACA-GTCCG--GA-ATT--ACCCGC-TG-TCCGGAAAT--AC-CCGGA-TATC
gi|17 : -C-TT--GCATT-GTCCA--GA-GTT--ACCC-AATG-TCCGGAATC--AC-CCGGA-TATCc
gi|12 : AACT-GTCCG--GA-ATT--ACCT-C-GGAT
Alignments
lowQualScore : 11 1 222 2 333333333333 1 222 2222 2 1 3333333 11 11 1111111 11 111 1 111111 22 111 22222 111111 1 111 1 11 11111 222222222 1 444444444 1111111 1111 222222222222 2222 111111 3333333333333333 2222222222 111111111 111 6666666666666666666666 22222222222 11111 22222 111111 111111 111111111111111111 11111111 111111 1 1111 11 11111111
lowQualScore : 4 66 88 2 5 4 111 77 4 0 555555555555 5 4 2 111 8888 0 1 0 3 5 7 3 8 1 7777777 0 0 0 0 0 11 11 9999999 6 0 8 11 111 1 0 8 0 55 8 6 6 999999 6 6 77 6 0 6 000 5 3 5 99999 5 77 666666 1 000 5 66 5 66 66 2 0 88 5 11111 5 000000000 66 5 0 66 0 4 66 77 666666666 5 5 888 5 8888888 5 5555 5 777777777777 9999 666666 5 5 4444444444444444 3333333333 5 888888888 5 5 777 5 3333333333333333333333 5 5 33333333333 5 888 11111 22222 9999 4 222222 555 000000 888888888888888888 33333333 3 3 55 7 3 666666 4 4 4 2 4 7777 4 55 4 55 99 4 2 2 4 999999 5555 4 66 4 4 4 00 4 99 4 1 4 8888 44444444 3 3 55 3 3 3 3 44 3 44 3 3 44 3 55 4 4 4
lowQualScore : . .. .. . . . ... .. . . ............ . . . ... .... . . . . . . . . . ....... . . . . . .. .. ....... . . . .. ... . . . . .. . . . ...... . . .. . . . ... . . . ..... . .. ...... . ... . .. . .. .. . . .. . ..... . ......... .. . . .. . . .. .. ......... . . ... . ....... . .... . ............ .... ...... . . ................ .......... . ......... . . ... . ...................... . . ........... . ... ..... ..... .... . ...... ... ...... .................. ........ . . .. . . ...... . . . . . .... . .. . .. .. . . . . ...... .... . .. . . . .. . .. . . . .... ........ . . .. . . . . .. . .. . . .. . .. . . .
lowQualScore : 0 55 00 5 5 0 000 00 0 0 555555555555 0 0 5 555 5555 7 0 7 3 0 3 2 0 0 6666666 8 8 8 8 8 44 00 0000000 0 8 0 00 000 4 8 0 6 66 0 7 7 222222 7 7 00 7 8 7 000 7 7 7 66666 7 99 444444 4 000 0 99 0 11 99 4 4 88 0 00000 0 000000000 99 0 0 99 2 3 66 99 111111111 0 0 888 0 1111111 7 6666 7 444444444444 7777 444444 7 7 7777777777777777 3333333333 7 999999999 7 7 999 7 6666666666666666666666 7 7 88888888888 0 888 22222 44444 4444 4 888888 333 555555 444444444444444444 22222222 6 6 00 3 6 000000 0 4 0 4 0 8888 0 55 0 55 55 0 0 3 0 999999 4444 4 11 4 4 4 88 4 22 0 0 0 5555 00000000 6 6 00 6 6 3 3 66 3 22 1 1 22 6 55 0 0 0
consensus : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGACG-TTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGTA-GCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATT-ACCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTT------CCA-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA--TTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C--TTTC------TTC-G-TCT-CC-------------CTTTT-A-----A--TT-TTCCC-----G---CA-AA-A---TAAGCA-TG---------------------CCAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-C-A--AA-GA--CA-AC--AG--AA-GAT-CNAAA-AA----A-CA-T--CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-ANAA-A----GGG-------AAAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
Reference ( family-5959 ) : NACCATGTTTACAATGGTATTCCCGAATAGCTTGTTTGTTCAGATTTTTACAAACGATGCATTGATACTAACAGATTGATCTA-ATTCTTTTAGGAATTTCTGACATAATTCAACTGTTGTGGCCACATCGTTAATTTTTTGGATCCGCCTACCGT-TCCTACTAANTTTCGACGGTTTGCGATTTTTGGTGTTTC-AANATGTG----ACNTTGTAATTGATTTAGAAATGTTTTCCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTACATGCATGCAAGTTTTCATTGAATA-TTGTA-GCC-TTGCACC------TAT-TAT-GTACCTCGTCCGGAATT-ACCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCGT-AAACAAA--AACCAT-TA--TTT------CCA-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA--TTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C--TTTC------TTC-G-TCT-CC-------------CTTTT-N-----A--TT-TTCCC-----G---CA-AA-A---TAAGCA-TG---------------------CCAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-C-A--AA-GA--CA-AC--AG--AA-GAT-CAAAA-AA----A-CA-N--CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACG-G-ANAA-A----GGG-------NAAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
gi|1 : ACCATGTTTACAATGGTATTCCCGAATAGCTTGTTTGTTCAGATTTTTACAAACGATGCATTGATACTAACAGATTGATCTA-ATTCTTTTAGGAATTTCTGACATAATTCAACTGTTGTGGCCACATCGTTAATTTTTTGGATCCGCCTACCGT-TCCTATTAAATTTCGACGGTTTG-GA--TTTGGTGTTTCAAAAATGTG----AC-TTGTAA-TGATTTAG-AATATTTT--GTTTTCATCTATTAT----AGAAAATA--TT-ACAGAC--TAA-CTCGATTATAT--TT-TTATACATGCATGCAAG-TTTCATTGAATAGTTGTA-GCCTTTGCACCAACATGTATCTATGGTA-CTCGTCCGGAA-T-ACCCGACTACAAGG-AAACG-GTAGTGTGGTAATTTCGGACATGCATGAAAC--A--AGCCAT-TA--TTT------CCAGTTG---ATTT-AGACGTTT--AATCCACTT-TT--C-AATT--G-ACAG--T--T-ATA---------T--TCAGCTGAACTTTTTCTAAGGTTTCTCTTAGT-TTTTAGTATCGGGCA-------TAACATCA-GAATAA---C-TTTCTCAAATCTGCTT-GTGGATTTTGAGTTT-AGC----AAGTTCCTTTTTTC-TG-TCTC------TGC-GTTCT-CTGACTTAACATAAACTTTT-G-----C--TTCTTCCCACTCAG---CA-AA-ACGCTAAGCA-TG---------------------ATAAAG-TAC-AAAGGT-----------TT-AA---A--TT--CAATA--TT-GAAT----TC-AAT------A-TATTCAA------T------------G-G-----AT--------AC-T-TTCAAGAA-TT----ATA-T---GAGC--T---TA-TAA-ACAAC-C-AGCAT-GA--TG-AT--AG--AACGAT-CCAAA-GA----A-TA-
gi|1 : A-GTAAA-C-A--ATTGA--CA-A----G--AA-ACT-CCAAC-AA----G-AA-A--GGA-CTT--TAT-A--A-TAGATAATGTC-ACA-G-AGAA-A----GGG-------AAATT-AGTTCGT--ATTTCATAAG-AAG-T-CTTT--GAACT-G-CCG--GA-AT-T--ACCCGCTG-TCCGGAATTTAACGC-CGGA--ATCctacataagttgagcttagtaaacaattgacaagaaactccaacaagaaaggactttataatagataatgtcacagagaaagggaaattagttcgtatttcataagaagtctttgaactgccggaattacccgctgtccggaatttaacgccggaatccc
gi|10 : accatgtttacaatggtattcccgaatagcttgtttgttcagatttttacaaacgatgcattgatactaacagattgatctaattcttttaggaatttctgacataattcaactgttgtggccacatcgttaattttttggatccgcctaccgttcctattaaatttcgacggtttggatttggtgtttcaaaaatgtgacttgtaatgatttagaatattttgttttcatctattatagaaaatattacagactaactcgattatatttttatacatgcatgcaagtttcattgaatagttgtagcctttgcaccaacatgtatctatggtactcgtccggaatacccgactacaaggaaacggtagtgtggtaatttcggacatgcatgaaacaagccattatttccagttgatttagacgtttaatccacttttcaattgacagttatattcagctgaactttttctaaggtttctcttagtttttagtatcgggcataacatcagaataactttctcaaatctgcttgtggattttgagtttagcaagttccttttttctgtctctgcgttctctgacttaacataaacttttgcttcttcccactcagcaaaacgctaagcatgataaagtacaaaggtttaaattcaatattgaattcaatatattcaatggatactttcaagaattatatgagcttataaacaaccagcatgatgatagaacgatccaaagaatactacataagttgagcttTGTA-GCC-TTGCACC------TAT-TAT-GTAC-TCGTCGGAAATT-ACCCGACTACGAGGAAAACG-GTGG---GACAATTCCGGACA-GCAT-AAAC--A--AACCAT-CA--TTT------GCA-TTG---ATTT-AGACATTT--GAT-CACTTATT--C-AACTAGG-AAAT--T--T-ACA---------T--TCA-CTCAAC-TTTTCTAGG--CTCTCTTAGTcc
gi|11 : GGTGTTTC-AAAATGTG----AC-TTGTAATTGATT-AGAA-TTTTTTTCACTTTTA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CAATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGTA-GCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATT-ACCTAACT
gi|12 : TCCC--GA-ATAC--ACCAACTG-TCCGGAATT--AC-CTCGGA-tg
gi|13 : ttaacgtatgttttatgagaataaagaaaattttaagttatatccggtgctatgattatgctggaaaT-AGACGTTT--AAT-CACTTAAT--CAA-CT--G-GACA--G--T-ATA---------TGTTCA-CTTAAC-TTTTCTAGG--TTCTCCTAGTCTTTCCATACC--GCAAT-TTCCCAAAACTA-GAA-AA---T-Atgtccct
gi|14 : -G-ACAA-A----GGG-------AAAGT-AGT-CAT--ATTTCATAAG-AAA-T-C-TG--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-
gi|15 : tatttacttaataAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACA-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAAAT--AC-C-CGGA-TATC
gi|16 : A--TT-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----ATACATGTACAC-T-TT--AGAA-TT-TTGATA-A---AAc
gi|17 : -C-TT--GCATT-GTCCA--GA-GT-T--ACCCAATG-TCCGGAATC--AC-C-CGGA-TATCca
gi|18 : A------TCG----------A-A-----AT--------AC-T-TC--GGAA-TT-TTGAT--G---AGACAATGA-
gi|2 : ACTATGTTTTCAAATGTAT--CAGAA-AGCTAGTTTGT---GACGATTACAAACGATGTATTAATACAAACAGATTGATCTATATCTTTTTAGGAATCTT-------AT---ACTGTTGTG-CCACTTTCTTAATTT---GGATCCGCCTACCGTAT--TATTAATTTTCGATG-TTTGAGATTTTTGGTGTTTC-AATATTTG-----CAT-GTAATTGATTTAGAAATGTTTTTCACTTTCA--TAT--TTTCGAAAAATTAATTT-ACAAAAAATAAAC-CGATTGTG-CATT-TTCTATATGCATACAAGTTTTCATC--ATA-TTGTAAGCC-TTGCACC------TAT-TAT-ATATTTCGTCCGGAATT-ACCCGACTACAAGGAAATCG-GAGG---GGTAATTCCGGACA-GCGT-GAACAAA--AACCAT-TA--TTC------CCA-TTG---ATTT-AGACGTTT--AAT-CACTTAAT--CAAACT--G-ACAA--TAAT-ATG---------T--TCA-CTTAAC--TTTCTAGG--TTCTCTTAGTCTTTTCATACC--GCAAT-TTCCCAAAACTA-AAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C---TTC------TTC-G-TCT-CC-------------CGTTT-G-----A--TT-TTCCC-----G---CA-AA-A---TAAGCATTG---------------------CCAAAGCTAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TT-GAAT----TC-AAT------A-T-TGCAA------TCG----------G-A-----AT--------AC-TGTT--AGAA-TT-TTGATA-A---AAACAATGA-TA--AA-GGAAA-C-A--AG-GA--CA-AC--AT--AA-GAT-CAAAA-AA----A-CA-G--CGA-CTT--TATATT-A-TAGATATTGTC-AAG-G-AAAA-A----GGG-------TAAGT--GT-CG---ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCC-CTGATCCGGAATT--AC-C-CGGA-TATC
gi|3 : aACTAATTTTCGATG-TTTGCGATTTT--GTGTTTC-AACATATGGTTTATATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--AAT--T----AGAAA-CAATTTTACAGAA--TAA-A-CTATTATATCATTCTTCTACATGTATGCAAGTTTTCATTGAATA-TTGTA-GCC-TTGCACC------TAT-AAC-GTA-CTCATCCAGAATTAACCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGGCA-GCAT-AAAC--A--AACCCG-CA--TTTCCTGAACCA-TTG---ATTA-AGATGTTT--CAT-CACTT-GT--CCAACT--G-GAAAATT--T-ATA---------T--TTA-CTTAAC-TTTT---GG--TTCTTTTAGACTTTTGATACC--G---------CAAAACTA-GAA-AA---T-ATT------TACGCTT-GTG-A--TTAAGTGT-AG-----A------TTTTTCC-CT-TTTC------TTC-G-TCT-GC-------------CTTTTAA-----A--TT-TTCCC-----G---CA-AC-A---TAAACA-TG----------------------CAAAG-TAC-AAAGGT------------C-AA---AG-TT--CAATA--ACTGACT----TC-AGT------A-T-TTTAT------TCG----------G-A-----AT--------AC-T-TC--GGAA-AT-TTGAT--A---CGACAATGA-TT-TAA-GAAAA-CAA--AA-GA--TA-TT--AG--AA-GAT-TTAAA-AA-------A-T--CAA-ATT--CAT-TT-A-TAAATA-TGTC-------ATAA-ACCCTGGG-------AAAGT-AGA-TGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACC
gi|4 : TTGGTGTTTC-AACATGTG----A-TTTGTAATTGATTTAGAAATGTTTTC-ACTTTTA--TAT--T----AGAAAATAATTT-ACAAAA--TAA-C-CAATTATATCATT-TTCTATATGCATACAAG------------A-TTGTA-GCC-TTGCACC------TAT-TAT-GTA-CTTGTCCGGAATT-ACCCGACTACAAGGAAAACG-GTGG---GGTAATTTCGTACA-GCAT-AAAC--A--AACCTT-TA--TTT------CCA-TTG---ATAT-AGACATTT--AAT-CACTTATT--C-AACTG-G-AAAA--T--T-ATA---------T--TCA-CTTAACTTTTTCTAGG--TTCCTTTAGTATTTTAAT-CC--G---------CAAAACTAGGAA-AA---T-A--------TAC-CGT-TTGAT--TTTA-TTT-AG-----A------TTTTTTCTT--TTTC------TTG-G-TCTGCC-------------TTTTT-A-----A--AT-TTCCC-----A---CA-AATAAT-TAAGCA-TG----------------------CAAGG-TAC-AAA-GT-----------CC-AA---AGTTC--AAATG---A-GAA-----TC-AAT------A---TTCAA------TCG----------A-A-----AT--------AC-T-TC--GGAA-TT-TTGAGT-A---AAACAATGA-TATTAA-GAAAAGC-A--AA-GA--CA-AT--AG--AA-GATCCAAAACAG----A-CA-T--CGA-CTC--TAC-TTAA-TAGATC-TATC-ACA-G-ACAA-T----GGG-------AAAGT-AGT-TGT--ATTTCATACG-AAG-T-C-TT--GAACT-GTCCA--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
gi|5 : TGA---GATAATTCCGGACA-GCAT-AACCAAAGAAATCATGTA--TTT------CAAGTTGTAAATTTTAGACGTTTTGAAT-CACTTGATTTCAATCT--GGAAAA--A--T-ATACATGTCGTGT--TCA-CTTAAC-TTTTCTAG---TTCTCTTAGTCTTTTC-TACC--GCAACTTTCCCAAAACTA-GAA-AAAAGT-ATG------ACCGCTTTGTGAT--TTGAGTTTTAGGATTCA------TTTTTTC-T--TTTTCTTTTGTTCTG-TCC-TC-------------ATCTT-ATAAGTA--TT-TCCCT-----GTCCCA-AA-A---TAAGCA-TGTCAAAAGTAACTAAACGGACTCCAAAG-TAT-TAAGATAATATAAACTTCC-AACTTAGTAT--CAATG--CG-GAAT----TA-AGTTACTGAA-T-TTCAAATATTTTCGAGAAGTCCCAG-ACATGCAT--------AC-T-TT--CGAA-TT-T-GATA-ATTAAAACA-TGA-TA-TAA-G--AA-C----AA-GA--CA-ACCTAGGAAA-GCG-CAAAA-AAGGAGA-CA----CGA-CTTCGTAT-TT-AGTAGATA-T-TC-ACA-G-AAAA-A----AGGCGCTGTTTACGT-CTT-CGTTGTTTTCATAAG-AAA-TAC-TTTGAAACTGGTCCGGTGACAT-T--ACCCc
gi|6 : AACGTGGGG---GGTAATTCCGGACA--CAT-AAACAA-----CCAT-TAATTTC------CCA-TTG---ATTT-AGACGTTT--A-T-CACTTATT--CAAACTTTG-AAAA--T--TTATA---------T--TCA-CTTAAC-TTT-CTAGG--TTTT--------------ACC--GCAA----------ACTA-GAA-AA---TTATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTT-CTTTTTC------TTC-G-TCT-TA-------------CCTTT-A-----AATTT-TTCCC-----G---GAGAA-A---TAAGCA-TG----------------------CAAAG-TACAAAAGGT-----------CCAAA---AG--T--CAATAATTC-AAAT----TCAAAT------ATT-TTCAA------TCG----------G-------AT--------ACTT-TC--GGAATTT-TTGAT-------AACAATGA-AT-TAA-GAAAA-C-A--AA-GAATCA-AC--AGA-AA-GATCCAAAA-AA----A-CATC--CGA-CTT--TAC-TA-A-CAGATA--GTCAACA-GTAGAA-A----GGG-------AATGT-AGT-TGT--ATTTCATAAG-AAGTT-C-TT--GAAC--GTACG--GA-AT-TAAACCCGCTG-TCCG
gi|7 : CCAAAACTA-GAA-AA---T-ATT-------ACGCTT-GTGG---TTGAGTTT-AG-----A------TTTTTTT-CGTTTTC------TTA-G-TCT-GC-------------CTTTT-C-----A--TT-TTCCC-----A---CA-AA-A---TAAGCA-TG---------------------C-AAAG-TAC-AAAGGT-----------CC-AA---AGTTCAATAATA--TT-GAAT----TC-AGT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AA-CAATGA-TA-TAA-GAAAA-C-A--AA-GA--CA-AC--AG--AA-GAT-CCAAA-AA----A-CA-T--CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-AAAA-A----GGG-------TAAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCTGGAATT--AC-C-CGGA-TATC
gi|8 : AAGGT-----------CC-AA---AGTT---CAATA------AATGGTGTC-AAT------A-T-TTCAT------TTG----------G-A-----AT--------AC-A-TC--GGAA-TT-TCGA-A-A---AGACAATGA-TA-TAA-TAAAA-C-C--AG-GA--CA-AC--AG--AA-GATCCGAAA-AA----A-CA-T--TGA-ATT--TAT-TT-A-TAGATA--GTC-TCA-G-ACAA-A----GGG-------AAAGC-AGA-TGC--ATTTGATAAG-AAG-T-C-TT--ACGCT-GTCCG--GT-AT-T--ACCCAATG-TCCAGAATT--AC-C-C-GA-TATCc
gi|9 : A------TCG----------GTA-----AT--------AC-T-TC--GGAAATTATTGATTTA---AAACAATGAATA-TAAAGAAAA-G-A--AA-GA--CATAC--AG--AA-GAT-CAAAA-AA----AACA-CTTCGAGCTT--TAT-TT-T-AAGATA-TGTC-ACATG-AAAATA----GGG-------CAAGTTAGT-CGT--ATTTCATAAGAAAG-T-C-TT--GAACT-GTCCG--GA-AT-T--A-CCGCTG-TCCGGAATT--AC-C-CGGATTATCgg
Alignments
lowQualScore : 11 1 222 1 333333333333 1 222 2222 11 2 3333333 11 11 1111111 11 111 1 111111 111 222222 11111111 111 1 11 11111 222222222 1 4444444 1111111 222 222222222222 2222 111111 3333333333333333 22222222 111111111 111 66666666666666666666666 22222222222 111 22222 111111 111111 111111111111111111 11111111 111111 1111 11 11111111
lowQualScore : 1 22 88 1 5 1 111 33 1 5 555555555555 5 1 2 111 4444 44 6 7 3 8 1 4444444 0 0 0 0 0 11 11 9999999 6 0 8 11 111 1 0 8 0 55 8 6 6 999999 6 6 6 6 0 6 000 5 5 000000 5 77 88888888 000 5 66 5 66 66 2 0 88 5 11111 5 000000000 66 5 0 66 0 4 66 77 4444444 5 5 888 5 8888888 5 000 5 777777777777 4444 5 666666 5 5 4444444444444444 22222222 5 888888888 5 5 777 5 33333333333333333333333 5 5 33333333333 5 888 0 333 22222 9999 4 222222 555 000000 888888888888888888 33333333 3 3 55 7 3 333333 2 4 4 4 2 4 55 8 55 4 55 99 4 8 1 55 8888 4 1111 4 66 4 4 4 00 4 4 4 1 4 44444444 3 3 55 3 3 3 3 44 3 44 3 3 44 3 55 4 4 4
lowQualScore : . .. .. . . . ... .. . . ............ . . . ... .... .. . . . . . ....... . . . . . .. .. ....... . . . .. ... . . . . .. . . . ...... . . . . . . ... . . ...... . .. ........ ... . .. . .. .. . . .. . ..... . ......... .. . . .. . . .. .. ....... . . ... . ....... . ... . ............ .... . ...... . . ................ ........ . ......... . . ... . ....................... . . ........... . ... . ... ..... .... . ...... ... ...... .................. ........ . . .. . . ...... . . . . . . .. . .. . .. .. . . . .. .... . .... . .. . . . .. . . . . . ........ . . .. . . . . .. . .. . . .. . .. . . .
lowQualScore : 0 00 00 0 5 0 000 55 0 5 555555555555 0 0 5 555 0000 00 7 3 2 0 0 6666666 8 8 8 8 8 44 00 0000000 0 8 0 00 000 4 8 0 6 66 0 7 7 222222 7 7 7 7 8 7 000 7 7 666666 7 99 99999999 000 0 99 0 11 99 4 4 88 0 00000 0 000000000 99 0 0 99 2 3 66 99 1111111 0 0 888 0 1111111 7 333 7 444444444444 0000 7 444444 7 7 7777777777777777 33333333 7 999999999 7 7 999 7 00000000000000000000000 7 7 88888888888 0 888 1 999 44444 4444 4 888888 333 555555 444444444444444444 22222222 6 6 00 3 6 777777 3 0 4 0 4 0 55 0 55 0 55 55 0 0 0 55 5555 0 9999 4 11 4 4 4 88 0 0 0 0 0 00000000 6 6 00 6 6 3 3 66 3 22 1 1 22 6 55 0 0 0
consensus : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGAC-GTTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTTCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA--TTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C--TTT-C------TTC-G-TCT-CC-------------CTTTTA-----A--TT-TTCCC-----G---CA-AA-A---TAAGCA-TG---------------------CCAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CNAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-ANAA-AGGGA-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
Reference ( family-5959 ) : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGAC-GTTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTTCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA--TTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C--TTT-C------TTC-G-TCT-CC-------------CTTTTA-----A--TT-TTCCC-----G---CA-AA-A---TAAGCA-TG---------------------CCAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CNAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-ANAA-AGGGA-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
gi|1 : ACCATGTTTACAATGGTATTCCCGAATAGCTTGTTTGTTCAGATTTTTACAAACGATGCATTGATACTAACAGATTGATCTA-ATTCTTTTAGGAATTTCTGACATAATTCAACTGTTGTGGCCACATCGTTAATTTTTTGGATCCGCCTACCGT-TCCTATTAAATTTCGACGGTTTG-GA--TTTGGTGTTTCAAAAATGTG----AC-TTGTAA-TGATTTAG-AATATTTT--GTTTTCATCTATTAT----AGAAAATA--TT-ACAGAC--TAA-CTCGATTATAT--TT-TTATACATGCATGCAAG-TTTCATTGAATAGTTGT-AGCCTTTGCACCAACATGTATCTATGGTA-CTCGTCCGGAA-TA-CCCGACTACAAGG-AAACG-GTAGTGTGGTAATTTCGGACATGCATGAAAC--A--AGCCAT-TA--TTTCC------AGTTG---ATTT-AGACGTTT--AATCCACTT-TT--C-AATT--G-ACAG--T--T-ATA---------T--TCAGCTGAACTTTTTCTAAGGTTTCTCTTAGT-TTTTAGTATCGGGCA-------TAACATCA-GAATAA---C-TTTCTCAAATCTGCTT-GTGGATTTTGAGTTT-AGC----AAGTTCCTTTTTTC-TG-TCT-C------TGC-GTTCT-CTGACTTAACATAAACTTTTG-----C--TTCTTCCCACTCAG---CA-AA-ACGCTAAGCA-TG---------------------ATAAAG-TAC-AAAGGT-----------TT-AA---A--TT--CAATA--TT-GAAT----TC-AAT------A-TATTCAA------T------------G-G-----AT--------AC-T-TTCAAGAA-TT----ATA-T---GAGC--T---TA-TAA-ACAAC-CAGCAT-GA--TG-AT--AG--AACGAT-CCAAA--GA----A-TA--
gi|1 : A-GTAAA-CA--ATTGA--CA-A----G--AA-ACT-CCAAC--AA----G-AA--A-GGA-CTT--TAT-A--A-TAGATAATGTC-ACA-G-AGAA-AGGGA-------AATT-AGTTCGT--ATTTCATAAG-AAG-T-CTTT--GAACT-G-CCG--GA-AT-T--ACCCGCTG-TCCGGAATTTAACGC-CGGA--ATCctacataagttgagcttagtaaacaattgacaagaaactccaacaagaaaggactttataatagataatgtcacagagaaagggaaattagttcgtatttcataagaagtctttgaactgccggaattacccgctgtccggaatttaacgccggaatccc
gi|10 : accatgtttacaatggtattcccgaatagcttgtttgttcagatttttacaaacgatgcattgatactaacagattgatctaattcttttaggaatttctgacataattcaactgttgtggccacatcgttaattttttggatccgcctaccgttcctattaaatttcgacggtttggatttggtgtttcaaaaatgtgacttgtaatgatttagaatattttgttttcatctattatagaaaatattacagactaactcgattatatttttatacatgcatgcaagtttcattgaatagttgtagcctttgcaccaacatgtatctatggtactcgtccggaatacccgactacaaggaaacggtagtgtggtaatttcggacatgcatgaaacaagccattatttccagttgatttagacgtttaatccacttttcaattgacagttatattcagctgaactttttctaaggtttctcttagtttttagtatcgggcataacatcagaataactttctcaaatctgcttgtggattttgagtttagcaagttccttttttctgtctctgcgttctctgacttaacataaacttttgcttcttcccactcagcaaaacgctaagcatgataaagtacaaaggtttaaattcaatattgaattcaatatattcaatggatactttcaagaattatatgagcttataaacaaccagcatgatgatagaacgatccaaagaatactacataagttgagcttTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCGGAAATTA-CCCGACTACGAGGAAAACG-GTGG---GACAATTCCGGACA-GCAT-AAAC--A--AACCAT-CA--TTTGC------A-TTG---ATTT-AGACATTT--GAT-CACTTATT--C-AACTAGG-AAAT--T--T-ACA---------T--TCA-CTCAAC-TTTTCTAGG--CTCTCTTAGTcc
gi|11 : GGTGTTTC-AAAATGTG----AC-TTGTAATTGATT-AGAA-TTTTTTTCACTTTTA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CAATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATTA-CCTAACT
gi|12 : TCCC--GA-ATAC--ACCAACTG-TCCGGAATT--AC-CTCGGA-tg
gi|13 : ttaacgtatgttttatgagaataaagaaaattttaagttatatccggtgctatgattatgctggaaaT-AGACGTTT--AAT-CACTTAAT--CAA-CT--G-GACA--G--T-ATA---------TGTTCA-CTTAAC-TTTTCTAGG--TTCTCCTAGTCTTTCCATACC--GCAAT-TTCCCAAAACTA-GAA-AA---T-Atgtccct
gi|14 : -ATA-G-ACAA-AGGGA-------AAGT-AGT-CAT--ATTTCATAAG-AAA-T-C-TG--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-
gi|15 : tatttacttaAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACA-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAAAT--AC-C-CGGA-TATC
gi|16 : A--TT-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----ATACATGTACAC-T-TT--AGAA-TT-TTGATA-A---AAc
gi|17 : -C-TT--GCATT-GTCCA--GA-GT-T--ACCCAATG-TCCGGAATC--AC-C-CGGA-TATCca
gi|18 : A------TCG----------A-A-----AT--------AC-T-TC--GGAA-TT-TTGAT--G---AGACAATGA-
gi|2 : ACTATGTTTTCAAATGTAT--CAGAA-AGCTAGTTTGT---GACGATTACAAACGATGTATTAATACAAACAGATTGATCTATATCTTTTTAGGAATCTT-------AT---ACTGTTGTG-CCACTTTCTTAATTT---GGATCCGCCTACCGTAT--TATTAATTTTCGAT-GTTTGAGATTTTTGGTGTTTC-AATATTTG-----CAT-GTAATTGATTTAGAAATGTTTTTCACTTTCA--TAT--TTTCGAAAAATTAATTT-ACAAAAAATAAAC-CGATTGTG-CATT-TTCTATATGCATACAAGTTTTCATC--ATA-TTGTAAGCC-TTGCACC------TAT-TAT-ATATTTCGTCCGGAATTA-CCCGACTACAAGGAAATCG-GAGG---GGTAATTCCGGACA-GCGT-GAACAAA--AACCAT-TA--TTCCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTAAT--CAAACT--G-ACAA--TAAT-ATG---------T--TCA-CTTAAC--TTTCTAGG--TTCTCTTAGTCTTTTCATACC--GCAAT-TTCCCAAAACTA-AAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C---TT-C------TTC-G-TCT-CC-------------CGTTTG-----A--TT-TTCCC-----G---CA-AA-A---TAAGCATTG---------------------CCAAAGCTAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TT-GAAT----TC-AAT------A-T-TGCAA------TCG----------G-A-----AT--------AC-TGTT--AGAA-TT-TTGATA-A---AAACAATGA-TA--AA-GGAAA-CA--AG-GA--CA-AC--AT--AA-GAT-CAAAA--AA----A-CA--G-CGA-CTT--TATATT-A-TAGATATTGTC-AAG-G-AAAA-AGGGT-------AAGT--GT-CG---ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCC-CTGATCCGGAATT--AC-C-CGGA-TATC
gi|3 : aACTAATTTTCGAT-GTTTGCGATTTT--GTGTTTC-AACATATGGTTTATATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--AAT--T----AGAAA-CAATTTTACAGAA--TAA-A-CTATTATATCATTCTTCTACATGTATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-AAC-GTA-CTCATCCAGAATTAACCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGGCA-GCAT-AAACAAA----CCCG-CA--TTTCCTGAACCA-TTG---ATTA-AGATGTTT--CAT-CACTT-GT--CCAACT--G-GAAAATT--T-ATA---------T--TTA-CTTAAC-TTTT---GG--TTCTTTTAGACTTTTGATACC--GCAA---------AACTA-GAA-AA---T-ATT------TACGCTT-GTGA---TTAAGTGT-AG-----A------TTTTTCC-C--TTTTC------TTC-G-TCT-GC-------------CTTTTA-----AA-TT-TTCCC-----G---CA-AC-A---TAAACA-TG---------------------C-AAAG-TAC-AAAGGT-----------C--AA---AGTT---CAATA--ACTGACT----TC-AGT------A-T-TTTAT------TCG----------G-A-----AT--------AC-T-TC--GGAA-AT-TTGATA-C---GA-CAATGA-TT-TAA-GAAAA-CA--AAAGA--TA-TT--AG--AA-GAT-TTAAA--AA----A-----T-CAA-ATT--CAT-TT-A-TAAATA-TGTC-ATA-A-ACCC-TGGGA-------AAGT-AGA-TGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACC
gi|4 : TTGGTGTTTC-AACATGTG----AT-TTGTAATTGATTTAGAAATGTTTTC-ACTTTTA--TAT--T----AGAAAATAATTT-ACAAAA--TAA-C-CAATTATATCATT-TTCTATATGCATACAAG------------A-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTTGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTTCGTACA-GCAT-AAAC--A--AACCTT-TA--TTTCC------A-TTG---ATAT-AGACATTT--AAT-CACTTATT--C-AACTG-G-AAAA--T--T-ATA---------T--TCA-CTTAACTTTTTCTAGG--TTCCTTTAGTATTTTAAT-CC--G---------CAAAACTAGGAA-AA---T-A--------TAC-CGT-TTGAT--TTTA-TTT-AG-----A------TTTTTTCTT--TTT-C------TTG-G-TCTGCC-------------TTTTTA-----A--AT-TTCCC-----A---CA-AATAAT-TAAGCA-TG----------------------CAAGG-TAC-AAA-GT-----------CC-AA---AGTTC--AAATG---A-GAA-----TC-AAT------A---TTCAA------TCG----------A-A-----AT--------AC-T-TC--GGAA-TT-TTGAGT-A---AAACAATGA-TATTAA-GAAAAGCA--AA-GA--CA-AT--AG--AA-GAT-CCAAAACAG----A-CA--T-CGA-CTC--TAC-TTAA-TAGATC-TATC-ACA-G-ACAA-TGGGA-------AAGT-AGT-TGT--ATTTCATACG-AAG-T-C-TT--GAACT-GTCCA--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
gi|5 : TGA---GATAATTCCGGACA-GCAT-AACCAAAGAAATCATGTA--TTTCA------AGTTGTAAATTTTAGACGTTTTGAAT-CACTTGATTTCAATCT--GGAAAA--A--T-ATACATGTCGTGT--TCA-CTTAAC-TTTTCTAG---TTCTCTTAGTCTTTTC-TACC--GCAACTTTCCCAAAACTA-GAA-AAAAGT-ATG------ACCGCTTTGTGAT--TTGAGTTTTAGGATTCA------TTTTTTC-T--TTT-TCTTTTGTTCTG-TCC-TC-------------ATCTTATAAGTA--TT-TCCCT-----GTCCCA-AA-A---TAAGCA-TGTCAAAAGTAACTAAACGGACTCCAAAG-TAT-TAAGATAATATAAACTTCC-AACTTAGTAT--CAATG--CG-GAAT----TA-AGTTACTGAA-T-TTCAAATATTTTCGAGAAGTCCCAG-ACATGCAT--------AC-T-TT--CGAA-TT-T-GATA-ATTAAAACA-TGA-TA-TAA-G--AA-C---AA-GA--CA-ACCTAGGAAA-GCG-CAAAA--AAGGAGA-CA----CGA-CTTCGTAT-TT-AGTAGATA-T-TC-ACA-G-AAAA-AAGGCGCTGTTTACGT-CTT-CGTTGTTTTCATAAG-AAA-TAC-TTTGAAACTGGTCCGGTGACAT-T--ACCCc
gi|6 : AACGTGGGG---GGTAATTCCGGACA--CAT-AAACAA-----CCAT-TAATTTCCC------A-TTG---ATTT-AGACGTTT--A-T-CACTTATT--CAAACTTTG-AAAA--T--TTATA---------T--TCA-CTTAAC-TTT-CTAGG--TTTT--------------ACC--GCAA----------ACTA-GAA-AA---TTATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTT-CTTTTT-C------TTC-G-TCT-TA-------------CCTTTA-----AATTT-TTCCC-----G---GAGAA-A---TAAGCA-TG----------------------CAAAG-TACAAAAGGT-----------CCAAA---AG--T--CAATAATTC-AAAT----TCAAAT------ATT-TTCAA------TCG----------G-------AT--------ACTT-TC--GGAATTT-TTGAT-------AACAATGA-AT-TAA-GAAAA-CA--AA-GAATCA-AC--AGA-AA-GATCCAAAA--AA----A-CA--TCCGA-CTT--TAC-TA-A-CAGATA--GTCAACA-GTAGAA-AGGGA-------ATGT-AGT-TGT--ATTTCATAAG-AAGTT-C-TT--GAAC--GTACG--GA-AT-TAAACCCGCTG-TCCG
gi|7 : CCAAAACTA-GAA-AA---T-ATT-------ACGCTT-GTGG---TTGAGTTT-AG-----A------TTTTTTT-CGTTTT-C------TTA-G-TCT-GC-------------CTTTTC-----A--TT-TTCCC-----A---CA-AA-A---TAAGCA-TG---------------------C-AAAG-TAC-AAAGGT-----------CC-AA---AGTTCAATAATA--TT-GAAT----TC-AGT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AA-CAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CCAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-AAAA-AGGGT-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCTGGAATT--AC-C-CGGA-TATC
gi|8 : AAGGT-----------CC-AA---AGTT---CAATA------AATGGTGTC-AAT------A-T-TTCAT------TTG----------G-A-----AT--------AC-A-TC--GGAA-TT-TCGA-A-A---AGACAATGA-TA-TAA-TAAAA-CC--AG-GA--CA-AC--AG--AA-GATCCGAAA--AA----A-CA--T-TGA-ATT--TAT-TT-A-TAGATA--GTC-TCA-G-ACAA-AGGGA-------AAGC-AGA-TGC--ATTTGATAAG-AAG-T-C-TT--ACGCT-GTCCG--GT-AT-T--ACCCAATG-TCCAGAATT--AC-C-C-GA-TATCc
gi|9 : A------TCG----------GTA-----AT--------AC-T-TC--GGAAATTATTGATTTA---AAACAATGAATA-TAAAGAAAA-GA--AA-GA--CATAC--AG--AA-GAT-CAAAA--AA----AACACTT-CGAGCTT--TAT-TT-T-AAGATA-TGTC-ACATG-AAAATAGGGC-------AAGTTAGT-CGT--ATTTCATAAGAAAG-T-C-TT--GAACT-GTCCG--GA-AT-T--A-CCGCTG-TCCGGAATT--AC-C-CGGATTATCgg
Alignments
lowQualScore : 11 1 222 1 333333333333 1 222 2222 11 2 3333333 11 11 1111111 11 111 1 111111 111 222222 11111111 111 1 11 11111 222222222 1 4444444 1111111 222 222222222222 2222 111111 3333333333333333 22222222 111111111 111 66666666666666666666666 22222222222 111 22222 111111 111111 111111111111111111 11111111 111111 1111 11 11111111
lowQualScore : 1 22 88 1 5 1 111 33 1 5 555555555555 5 1 2 111 4444 44 6 7 3 8 1 4444444 0 0 0 0 0 11 11 9999999 6 0 8 11 111 1 0 8 0 55 8 6 6 999999 6 6 6 6 0 6 000 5 5 000000 5 77 88888888 000 5 66 5 66 66 2 0 88 5 11111 5 000000000 66 5 0 66 0 4 66 77 4444444 5 5 888 5 8888888 5 000 5 777777777777 4444 5 666666 5 5 4444444444444444 22222222 5 888888888 5 5 777 5 33333333333333333333333 5 5 33333333333 5 888 0 333 22222 9999 4 222222 555 000000 888888888888888888 33333333 3 3 55 7 3 333333 2 4 4 4 2 4 55 8 55 4 55 99 4 8 1 55 8888 4 1111 4 66 4 4 4 00 4 4 4 1 4 44444444 3 3 55 3 3 3 3 44 3 44 3 3 44 3 55 4 4 4
lowQualScore : . .. .. . . . ... .. . . ............ . . . ... .... .. . . . . . ....... . . . . . .. .. ....... . . . .. ... . . . . .. . . . ...... . . . . . . ... . . ...... . .. ........ ... . .. . .. .. . . .. . ..... . ......... .. . . .. . . .. .. ....... . . ... . ....... . ... . ............ .... . ...... . . ................ ........ . ......... . . ... . ....................... . . ........... . ... . ... ..... .... . ...... ... ...... .................. ........ . . .. . . ...... . . . . . . .. . .. . .. .. . . . .. .... . .... . .. . . . .. . . . . . ........ . . .. . . . . .. . .. . . .. . .. . . .
lowQualScore : 0 00 00 0 5 0 000 55 0 5 555555555555 0 0 5 555 0000 00 7 3 2 0 0 6666666 8 8 8 8 8 44 00 0000000 0 8 0 00 000 4 8 0 6 66 0 7 7 222222 7 7 7 7 8 7 000 7 7 666666 7 99 99999999 000 0 99 0 11 99 4 4 88 0 00000 0 000000000 99 0 0 99 2 3 66 99 1111111 0 0 888 0 1111111 7 333 7 444444444444 0000 7 444444 7 7 7777777777777777 33333333 7 999999999 7 7 999 7 00000000000000000000000 7 7 88888888888 0 888 1 999 44444 4444 4 888888 333 555555 444444444444444444 22222222 6 6 00 3 6 777777 3 0 4 0 4 0 55 0 55 0 55 55 0 0 0 55 5555 0 9999 4 11 4 4 4 88 0 0 0 0 0 00000000 6 6 00 6 6 3 3 66 3 22 1 1 22 6 55 0 0 0
consensus : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGAC-GTTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTTCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA--TTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C--TTT-C------TTC-G-TCT-CC-------------CTTTTA-----A--TT-TTCCC-----G---CA-AA-A---TAAGCA-TG---------------------CCAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CNAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-ANAA-AGGGA-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
Reference ( family-5959 ) : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGAC-GTTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTTCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA--TTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C--TTT-C------TTC-G-TCT-CC-------------CTTTTA-----A--TT-TTCCC-----G---CA-AA-A---TAAGCA-TG---------------------CCAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CNAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-ANAA-AGGGA-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
gi|1 : ACCATGTTTACAATGGTATTCCCGAATAGCTTGTTTGTTCAGATTTTTACAAACGATGCATTGATACTAACAGATTGATCTA-ATTCTTTTAGGAATTTCTGACATAATTCAACTGTTGTGGCCACATCGTTAATTTTTTGGATCCGCCTACCGT-TCCTATTAAATTTCGACGGTTTG-GA--TTTGGTGTTTCAAAAATGTG----AC-TTGTAA-TGATTTAG-AATATTTT--GTTTTCATCTATTAT----AGAAAATA--TT-ACAGAC--TAA-CTCGATTATAT--TT-TTATACATGCATGCAAG-TTTCATTGAATAGTTGT-AGCCTTTGCACCAACATGTATCTATGGTA-CTCGTCCGGAA-TA-CCCGACTACAAGG-AAACG-GTAGTGTGGTAATTTCGGACATGCATGAAAC--A--AGCCAT-TA--TTTCC------AGTTG---ATTT-AGACGTTT--AATCCACTT-TT--C-AATT--G-ACAG--T--T-ATA---------T--TCAGCTGAACTTTTTCTAAGGTTTCTCTTAGT-TTTTAGTATCGGGCA-------TAACATCA-GAATAA---C-TTTCTCAAATCTGCTT-GTGGATTTTGAGTTT-AGC----AAGTTCCTTTTTTC-TG-TCT-C------TGC-GTTCT-CTGACTTAACATAAACTTTTG-----C--TTCTTCCCACTCAG---CA-AA-ACGCTAAGCA-TG---------------------ATAAAG-TAC-AAAGGT-----------TT-AA---A--TT--CAATA--TT-GAAT----TC-AAT------A-TATTCAA------T------------G-G-----AT--------AC-T-TTCAAGAA-TT----ATA-T---GAGC--T---TA-TAA-ACAAC-CAGCAT-GA--TG-AT--AG--AACGAT-CCAAA--GA----A-TA--
gi|1 : A-GTAAA-CA--ATTGA--CA-A----G--AA-ACT-CCAAC--AA----G-AA--A-GGA-CTT--TAT-A--A-TAGATAATGTC-ACA-G-AGAA-AGGGA-------AATT-AGTTCGT--ATTTCATAAG-AAG-T-CTTT--GAACT-G-CCG--GA-AT-T--ACCCGCTG-TCCGGAATTTAACGC-CGGA--ATCctacataagttgagcttagtaaacaattgacaagaaactccaacaagaaaggactttataatagataatgtcacagagaaagggaaattagttcgtatttcataagaagtctttgaactgccggaattacccgctgtccggaatttaacgccggaatccc
gi|10 : accatgtttacaatggtattcccgaatagcttgtttgttcagatttttacaaacgatgcattgatactaacagattgatctaattcttttaggaatttctgacataattcaactgttgtggccacatcgttaattttttggatccgcctaccgttcctattaaatttcgacggtttggatttggtgtttcaaaaatgtgacttgtaatgatttagaatattttgttttcatctattatagaaaatattacagactaactcgattatatttttatacatgcatgcaagtttcattgaatagttgtagcctttgcaccaacatgtatctatggtactcgtccggaatacccgactacaaggaaacggtagtgtggtaatttcggacatgcatgaaacaagccattatttccagttgatttagacgtttaatccacttttcaattgacagttatattcagctgaactttttctaaggtttctcttagtttttagtatcgggcataacatcagaataactttctcaaatctgcttgtggattttgagtttagcaagttccttttttctgtctctgcgttctctgacttaacataaacttttgcttcttcccactcagcaaaacgctaagcatgataaagtacaaaggtttaaattcaatattgaattcaatatattcaatggatactttcaagaattatatgagcttataaacaaccagcatgatgatagaacgatccaaagaatactacataagttgagcttTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCGGAAATTA-CCCGACTACGAGGAAAACG-GTGG---GACAATTCCGGACA-GCAT-AAAC--A--AACCAT-CA--TTTGC------A-TTG---ATTT-AGACATTT--GAT-CACTTATT--C-AACTAGG-AAAT--T--T-ACA---------T--TCA-CTCAAC-TTTTCTAGG--CTCTCTTAGTcc
gi|11 : GGTGTTTC-AAAATGTG----AC-TTGTAATTGATT-AGAA-TTTTTTTCACTTTTA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CAATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATTA-CCTAACT
gi|12 : TCCC--GA-ATAC--ACCAACTG-TCCGGAATT--AC-CTCGGA-tg
gi|13 : ttaacgtatgttttatgagaataaagaaaattttaagttatatccggtgctatgattatgctggaaaT-AGACGTTT--AAT-CACTTAAT--CAA-CT--G-GACA--G--T-ATA---------TGTTCA-CTTAAC-TTTTCTAGG--TTCTCCTAGTCTTTCCATACC--GCAAT-TTCCCAAAACTA-GAA-AA---T-Atgtccct
gi|14 : -ATA-G-ACAA-AGGGA-------AAGT-AGT-CAT--ATTTCATAAG-AAA-T-C-TG--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-
gi|15 : tatttacttaAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACA-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAAAT--AC-C-CGGA-TATC
gi|16 : A--TT-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----ATACATGTACAC-T-TT--AGAA-TT-TTGATA-A---AAc
gi|17 : -C-TT--GCATT-GTCCA--GA-GT-T--ACCCAATG-TCCGGAATC--AC-C-CGGA-TATCca
gi|18 : A------TCG----------A-A-----AT--------AC-T-TC--GGAA-TT-TTGAT--G---AGACAATGA-
gi|2 : ACTATGTTTTCAAATGTAT--CAGAA-AGCTAGTTTGT---GACGATTACAAACGATGTATTAATACAAACAGATTGATCTATATCTTTTTAGGAATCTT-------AT---ACTGTTGTG-CCACTTTCTTAATTT---GGATCCGCCTACCGTAT--TATTAATTTTCGAT-GTTTGAGATTTTTGGTGTTTC-AATATTTG-----CAT-GTAATTGATTTAGAAATGTTTTTCACTTTCA--TAT--TTTCGAAAAATTAATTT-ACAAAAAATAAAC-CGATTGTG-CATT-TTCTATATGCATACAAGTTTTCATC--ATA-TTGTAAGCC-TTGCACC------TAT-TAT-ATATTTCGTCCGGAATTA-CCCGACTACAAGGAAATCG-GAGG---GGTAATTCCGGACA-GCGT-GAACAAA--AACCAT-TA--TTCCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTAAT--CAAACT--G-ACAA--TAAT-ATG---------T--TCA-CTTAAC--TTTCTAGG--TTCTCTTAGTCTTTTCATACC--GCAAT-TTCCCAAAACTA-AAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C---TT-C------TTC-G-TCT-CC-------------CGTTTG-----A--TT-TTCCC-----G---CA-AA-A---TAAGCATTG---------------------CCAAAGCTAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TT-GAAT----TC-AAT------A-T-TGCAA------TCG----------G-A-----AT--------AC-TGTT--AGAA-TT-TTGATA-A---AAACAATGA-TA--AA-GGAAA-CA--AG-GA--CA-AC--AT--AA-GAT-CAAAA--AA----A-CA--G-CGA-CTT--TATATT-A-TAGATATTGTC-AAG-G-AAAA-AGGGT-------AAGT--GT-CG---ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCC-CTGATCCGGAATT--AC-C-CGGA-TATC
gi|3 : aACTAATTTTCGAT-GTTTGCGATTTT--GTGTTTC-AACATATGGTTTATATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--AAT--T----AGAAA-CAATTTTACAGAA--TAA-A-CTATTATATCATTCTTCTACATGTATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-AAC-GTA-CTCATCCAGAATTAACCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGGCA-GCAT-AAACAAA----CCCG-CA--TTTCCTGAACCA-TTG---ATTA-AGATGTTT--CAT-CACTT-GT--CCAACT--G-GAAAATT--T-ATA---------T--TTA-CTTAAC-TTTT---GG--TTCTTTTAGACTTTTGATACC--GCAA---------AACTA-GAA-AA---T-ATT------TACGCTT-GTGA---TTAAGTGT-AG-----A------TTTTTCC-C--TTTTC------TTC-G-TCT-GC-------------CTTTTA-----AA-TT-TTCCC-----G---CA-AC-A---TAAACA-TG---------------------C-AAAG-TAC-AAAGGT-----------C--AA---AGTT---CAATA--ACTGACT----TC-AGT------A-T-TTTAT------TCG----------G-A-----AT--------AC-T-TC--GGAA-AT-TTGATA-C---GA-CAATGA-TT-TAA-GAAAA-CA--AAAGA--TA-TT--AG--AA-GAT-TTAAA--AA----A-----T-CAA-ATT--CAT-TT-A-TAAATA-TGTC-ATA-A-ACCC-TGGGA-------AAGT-AGA-TGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACC
gi|4 : TTGGTGTTTC-AACATGTG----AT-TTGTAATTGATTTAGAAATGTTTTC-ACTTTTA--TAT--T----AGAAAATAATTT-ACAAAA--TAA-C-CAATTATATCATT-TTCTATATGCATACAAG------------A-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTTGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTTCGTACA-GCAT-AAAC--A--AACCTT-TA--TTTCC------A-TTG---ATAT-AGACATTT--AAT-CACTTATT--C-AACTG-G-AAAA--T--T-ATA---------T--TCA-CTTAACTTTTTCTAGG--TTCCTTTAGTATTTTAAT-CC--G---------CAAAACTAGGAA-AA---T-A--------TAC-CGT-TTGAT--TTTA-TTT-AG-----A------TTTTTTCTT--TTT-C------TTG-G-TCTGCC-------------TTTTTA-----A--AT-TTCCC-----A---CA-AATAAT-TAAGCA-TG----------------------CAAGG-TAC-AAA-GT-----------CC-AA---AGTTC--AAATG---A-GAA-----TC-AAT------A---TTCAA------TCG----------A-A-----AT--------AC-T-TC--GGAA-TT-TTGAGT-A---AAACAATGA-TATTAA-GAAAAGCA--AA-GA--CA-AT--AG--AA-GAT-CCAAAACAG----A-CA--T-CGA-CTC--TAC-TTAA-TAGATC-TATC-ACA-G-ACAA-TGGGA-------AAGT-AGT-TGT--ATTTCATACG-AAG-T-C-TT--GAACT-GTCCA--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
gi|5 : TGA---GATAATTCCGGACA-GCAT-AACCAAAGAAATCATGTA--TTTCA------AGTTGTAAATTTTAGACGTTTTGAAT-CACTTGATTTCAATCT--GGAAAA--A--T-ATACATGTCGTGT--TCA-CTTAAC-TTTTCTAG---TTCTCTTAGTCTTTTC-TACC--GCAACTTTCCCAAAACTA-GAA-AAAAGT-ATG------ACCGCTTTGTGAT--TTGAGTTTTAGGATTCA------TTTTTTC-T--TTT-TCTTTTGTTCTG-TCC-TC-------------ATCTTATAAGTA--TT-TCCCT-----GTCCCA-AA-A---TAAGCA-TGTCAAAAGTAACTAAACGGACTCCAAAG-TAT-TAAGATAATATAAACTTCC-AACTTAGTAT--CAATG--CG-GAAT----TA-AGTTACTGAA-T-TTCAAATATTTTCGAGAAGTCCCAG-ACATGCAT--------AC-T-TT--CGAA-TT-T-GATA-ATTAAAACA-TGA-TA-TAA-G--AA-C---AA-GA--CA-ACCTAGGAAA-GCG-CAAAA--AAGGAGA-CA----CGA-CTTCGTAT-TT-AGTAGATA-T-TC-ACA-G-AAAA-AAGGCGCTGTTTACGT-CTT-CGTTGTTTTCATAAG-AAA-TAC-TTTGAAACTGGTCCGGTGACAT-T--ACCCc
gi|6 : AACGTGGGG---GGTAATTCCGGACA--CAT-AAACAA-----CCAT-TAATTTCCC------A-TTG---ATTT-AGACGTTT--A-T-CACTTATT--CAAACTTTG-AAAA--T--TTATA---------T--TCA-CTTAAC-TTT-CTAGG--TTTT--------------ACC--GCAA----------ACTA-GAA-AA---TTATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTT-CTTTTT-C------TTC-G-TCT-TA-------------CCTTTA-----AATTT-TTCCC-----G---GAGAA-A---TAAGCA-TG----------------------CAAAG-TACAAAAGGT-----------CCAAA---AG--T--CAATAATTC-AAAT----TCAAAT------ATT-TTCAA------TCG----------G-------AT--------ACTT-TC--GGAATTT-TTGAT-------AACAATGA-AT-TAA-GAAAA-CA--AA-GAATCA-AC--AGA-AA-GATCCAAAA--AA----A-CA--TCCGA-CTT--TAC-TA-A-CAGATA--GTCAACA-GTAGAA-AGGGA-------ATGT-AGT-TGT--ATTTCATAAG-AAGTT-C-TT--GAAC--GTACG--GA-AT-TAAACCCGCTG-TCCG
gi|7 : CCAAAACTA-GAA-AA---T-ATT-------ACGCTT-GTGG---TTGAGTTT-AG-----A------TTTTTTT-CGTTTT-C------TTA-G-TCT-GC-------------CTTTTC-----A--TT-TTCCC-----A---CA-AA-A---TAAGCA-TG---------------------C-AAAG-TAC-AAAGGT-----------CC-AA---AGTTCAATAATA--TT-GAAT----TC-AGT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AA-CAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CCAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-AAAA-AGGGT-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCTGGAATT--AC-C-CGGA-TATC
gi|8 : AAGGT-----------CC-AA---AGTT---CAATA------AATGGTGTC-AAT------A-T-TTCAT------TTG----------G-A-----AT--------AC-A-TC--GGAA-TT-TCGA-A-A---AGACAATGA-TA-TAA-TAAAA-CC--AG-GA--CA-AC--AG--AA-GATCCGAAA--AA----A-CA--T-TGA-ATT--TAT-TT-A-TAGATA--GTC-TCA-G-ACAA-AGGGA-------AAGC-AGA-TGC--ATTTGATAAG-AAG-T-C-TT--ACGCT-GTCCG--GT-AT-T--ACCCAATG-TCCAGAATT--AC-C-C-GA-TATCc
gi|9 : A------TCG----------GTA-----AT--------AC-T-TC--GGAAATTATTGATTTA---AAACAATGAATA-TAAAGAAAA-GA--AA-GA--CATAC--AG--AA-GAT-CAAAA--AA----AACACTT-CGAGCTT--TAT-TT-T-AAGATA-TGTC-ACATG-AAAATAGGGC-------AAGTTAGT-CGT--ATTTCATAAGAAAG-T-C-TT--GAACT-GTCCG--GA-AT-T--A-CCGCTG-TCCGGAATT--AC-C-CGGATTATCgg
blockSeqs : T AT . A . A . GA A T AT . T C . AT T A T T . A GTTTATA TC . TTTCG A T AA AC A C T GA . A . . . . T A T . . . AAAGAA G AT TGAACCA TAA T TG . AT TT A AG G TAA T CATGTCGTG GT . T . C CA . ACTTTCC G . AAG T T T A T GATTCA CTT T CTTTTG T . GCC TAAGTA . GTCC G T AT T TCAAAAGTAACTAAACGGACTCC C A AATATAAACTT A CTT CAA ATTC GGTG A TACTGA TT ATATTT AGAAGTCCCAGACATGC ACATGTAC T G . T A AATTA A A T A T G . T AT T CT GA . C C AC GGAG A CTT G CG A A G TT A T T C T CGCTGTTT T . TG A T A . TG G GT C A AA A . . T T
blockSeqs : T C T T . T AC TC . T T . . C G . T GA . . . . . . . . . . . . AAAA . . AG . . . . AA . A TT . ATT . . . . . . C CA . ATTTCC . . . . T . T . A CGT . . . . CC AAT . G . . . . CC . . . . . T ACT . . . T . GTA . . . . A . TTA A . . . G . . A . . . A . C A . . . TC . . . . . T . . . A . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . C CA CC . T A . . A T . T . . . . . . . . . . . . . AAA . . A . . . . AA . C G . T . . . . . . C GA . ATTTCC . . . . T . T . A TT . . . . GC AA . G . . . . C . . . . . C TT . . . T . GA . . . . . . AA A . . . A . . . . . . . . . T . . . G . . . . . T . . . C . T . . . . . . . . . . . . . . . . . .
blockSeqs : . C AT C . T . . . C A . . . . . . . . . . . . . . . AA . . A . . . . AT . A . . G . . . . . . A AA . A . . . . A . A . A C . . . . TC A . A . . . . C . . . . . T TT . . . T . AA . . . . . . AA A . . . A . . . . . . . . . C . . . T . . . . . T . . . C . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . AA . . A . . . . GA . A . . T . . . . . . C C . A . . . . T . . . A C . . . . TA A . G . . . . C . . . . . T CG . . . T . GA . . . . . . AC A . . . A . . . . . . . . . A . . . T . . . . . T . . . A . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . AA . . A . . . . AT . . . . A . . . . . . . . . . . . . . . . . . A T . . . . GC A . A . . . . C . . . . . . TT . . . T . GA . . . . . . TA A . . . A . . . . . . . . . A . . . T . . . . . T . . . G . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . . . T . . . . . . . . . . . . . . A . . . T . AA . . . . . . AA A . . . A . . . . . . . . . C . . . T . . . . . . . . . A . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . GA . . . . . . AA . . . . A . . . . . . . . . G . . . . . . . . . . . . . C . A . . . . . . . . . . . . . . . . . .
blockSeqs : . GA . . . . . . G . . . . . . . . . . . . . A . . . . . . A . C . . . . . . . . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . .
blockSeqCons : TC ** T****** C** ** ****** *** A******* AN ** ** ATTTCC* T****** N** A*********** CT** NC************** G******** *** C********************** T** ** ** T* **
originalCons : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGAC-GTTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTTCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA--TTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGAA--TTGAGTTT-AG-----A------TTTTTTC-C--TTT-C------TTC-G-TCT-CC-------------CTTTTA-----A--TT-TTCCC-----G---CA-AA-A---TAAGCA-TG---------------------CCAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CNAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-ANAA-AGGGA-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
finalCons : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGAC-GTTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTTCACTTTCA--TATT------AGAAAATAATTT-ACAGAA--TAAC--CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATT--ATA-TTGT-AGCC-TTGCACC------TAT-TAT-GTA-CTCGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTTCCA-------TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAATTTCC-CAAAACTA-GAA-AA---T-ATTT------ACGCTT-GTGAN--TTGAGTTT-AGA-----------TTTTTTCCT--TTT-C------TTC-G-TCTNC--------------CTTTTA-----A--TT-TTCCCG--------CA-AA-A---TAAGCA-TGC----------------------AAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------AT--TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CNAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATAT-GTC-ACA-G-ANAA-AGGGA-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
Alignments
lowQualScore : 11 1 222 1 333333333333 1 222 2222 11 2 3333333 1 11 1111111 11 111 1 33 111111 111 222222 11111111 111 1 11 11111 222222222 1 3333333 1111111 1111 333333333333 111111 33333333333333 22222222 55555555555555555555555555555555555 111 1 22222222222 111 22222 111111 111111 111111111111111111 11111111 111111 1111 11 11111111
lowQualScore : 1 22 88 1 5 1 111 33 1 5 555555555555 5 1 2 111 4444 44 6 7 3 8 1 4444444 0 0 0 0 0 3 11 9999999 6 0 8 11 111 1 0 8 0 33 8 6 6 999999 6 6 6 6 0 6 000 5 5 000000 5 77 88888888 000 5 66 5 66 66 2 0 88 5 11111 5 000000000 66 5 0 66 0 4 66 77 5555555 5 5 888 5 8888888 5 4444 5 333333333333 77 666666 1 33333333333333 5 22222222 5 33333333333333333333333333333333333 555 1 5 5 33333333333 5 888 0 333 22222 9999 4 222222 555 000000 888888888888888888 33333333 3 3 55 7 3 333333 2 4 4 4 2 4 55 8 55 4 55 99 4 8 1 55 8888 4 1111 4 66 4 4 4 00 4 4 4 1 4 44444444 3 3 55 3 3 3 3 44 3 44 3 3 44 3 55 4 4 4
lowQualScore : . .. .. . . . ... .. . . ............ . . . ... .... .. . . . . . ....... . . . . . . .. ....... . . . .. ... . . . . .. . . . ...... . . . . . . ... . . ...... . .. ........ ... . .. . .. .. . . .. . ..... . ......... .. . . .. . . .. .. ....... . . ... . ....... . .... . ............ .. ...... . .............. . ........ . ................................... ... . . . ........... . ... . ... ..... .... . ...... ... ...... .................. ........ . . .. . . ...... . . . . . . .. . .. . .. .. . . . .. .... . .... . .. . . . .. . . . . . ........ . . .. . . . . .. . .. . . .. . .. . . .
lowQualScore : 0 00 00 0 5 0 000 55 0 5 555555555555 0 0 5 555 0000 00 7 3 2 0 0 6666666 8 8 8 8 8 6 00 0000000 0 8 0 00 000 4 8 0 6 00 0 7 7 222222 7 7 7 7 8 7 000 7 7 666666 7 99 99999999 000 0 99 0 11 99 4 4 88 0 00000 0 000000000 99 0 0 99 2 3 66 99 2222222 0 0 888 0 1111111 7 6666 7 111111111111 11 444444 0 66666666666666 7 33333333 7 44444444444444444444444444444444444 777 4 7 7 88888888888 0 888 1 999 44444 4444 4 888888 333 555555 444444444444444444 22222222 6 6 00 3 6 777777 3 0 4 0 4 0 55 0 55 0 55 55 0 0 0 55 5555 0 9999 4 11 4 4 4 88 0 0 0 0 0 00000000 6 6 00 6 6 3 3 66 3 22 1 1 22 6 55 0 0 0
consensus : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGAC-GTTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTTCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGTA-GCC-TTGCACC------TAT-TAT-GTACT-CGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTTCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA-TTTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGA--NTTGAGTTT-AG-----A------TTTTTTCC-TTTTCTTC------GTCTNC--------------C-TTTTA-----A--TT-TTCCC-----G-----------------CA-AA-A-----TAAGCA---TG-CAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CNAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-ANAA-AGGGA-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
Reference ( family-5959 ) : NACCATGTTTNCAANNGTATTCCNGAATAGCTNGTTTGTTCAGACGNTTACAAACGATGCATTGATACNAACAGATTGATCTATATCCTTTTAGGAATCTCTGACATAATTCAACTGTTGTGGCCACNTCGTTAATTTTTTGGATCCGCCTACCGTATCCTATTAATTTTCGAC-GTTTG-GATTTTTGGTGTTTC-AANATGTG----ACATTGTAATTGATTTAGAAATGTTTTTCACTTTCA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CGATTATATCATT-TTCTATATGCATGCAAGTTTTCATT--ATA-TTGTA-GCC-TTGCACC------TAT-TAT-GTACT-CGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGACA-GCAT-AAACAAA--AACCAT-TA--TTTCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTANT--CAAACT--G-AAAA--T--T-ATA---------T--TCA-CTTAAC-TTTTCTAGG--TTCTCTTAGTCTTTTNATACC--GCAA-TTTCCCAAAACTA-GAA-AA---T-ATT------TACGCTT-GTGA--NTTGAGTTT-AG-----A------TTTTTTCC-TTTTCTTC------GTCTNC--------------C-TTTTA-----A--TT-TTCCC-----G-----------------CA-AA-A-----TAAGCA---TG-CAAAG-TAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TC-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AAACAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CNAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-ANAA-AGGGA-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
gi|1 : ACCATGTTTACAATGGTATTCCCGAATAGCTTGTTTGTTCAGATTTTTACAAACGATGCATTGATACTAACAGATTGATCTA-ATTCTTTTAGGAATTTCTGACATAATTCAACTGTTGTGGCCACATCGTTAATTTTTTGGATCCGCCTACCGT-TCCTATTAAATTTCGACGGTTTG-GA--TTTGGTGTTTCAAAAATGTG----AC-TTGTAA-TGATTTAG-AATATTTT--GTTTTCATCTATTAT----AGAAAATA--TT-ACAGAC--TAA-CTCGATTATAT--TT-TTATACATGCATGCAAG-TTTCATTGAATAGTTGTA-GCCTTTGCACCAACATGTATCTATGGTACT-CGTCCGGAA-TA-CCCGACTACAAGG-AAACG-GTAGTGTGGTAATTTCGGACATGCATGAAAC--A--AGCCAT-TA--TTTCC------AGTTG---ATTT-AGACGTTT--AATCCACTT-TT--C-AATT--G-ACAG--T--T-ATA---------T--TCAGCTGAACTTTTTCTAAGGTTTCTCTTAGT-TTTTAGTATCGGGCA-------TAACATCA-GAATAA---C-TTTCTCAAATCTGCTT-GTGGATTTTGAGTTT-AGC----AAGTTCCTTTTTTCT-GTCTCTGC------GTTCTCTGACTTAACATAAAC-TTTTG-----C--TTCTTCCCACTCAG-----------------CA-AA-ACGC--TAAGCA---TGATAAAG-TAC-AAAGGT-----------TT-AA---A--TT--CAATA--TT-GAAT----TC-AAT------A-TATTCAA------T------------G-G-----AT--------AC-T-TTCAAGAA-TT----ATA-T---GAGC--T---TA-TAA-ACAAC-CAGCAT-GA--TG-AT--AG--AACGAT-CCAAA--GA----A-TA--
gi|1 : A-GTAAA-CA--ATTGA--CA-A----G--AA-ACT-CCAAC--AA----G-AA--A-GGA-CTT--TAT-A--A-TAGATAATGTC-ACA-G-AGAA-AGGGA-------AATT-AGTTCGT--ATTTCATAAG-AAG-T-CTTT--GAACT-G-CCG--GA-AT-T--ACCCGCTG-TCCGGAATTTAACGC-CGGA--ATCctacataagttgagcttagtaaacaattgacaagaaactccaacaagaaaggactttataatagataatgtcacagagaaagggaaattagttcgtatttcataagaagtctttgaactgccggaattacccgctgtccggaatttaacgccggaatccc
gi|10 : accatgtttacaatggtattcccgaatagcttgtttgttcagatttttacaaacgatgcattgatactaacagattgatctaattcttttaggaatttctgacataattcaactgttgtggccacatcgttaattttttggatccgcctaccgttcctattaaatttcgacggtttggatttggtgtttcaaaaatgtgacttgtaatgatttagaatattttgttttcatctattatagaaaatattacagactaactcgattatatttttatacatgcatgcaagtttcattgaatagttgtagcctttgcaccaacatgtatctatggtactcgtccggaatacccgactacaaggaaacggtagtgtggtaatttcggacatgcatgaaacaagccattatttccagttgatttagacgtttaatccacttttcaattgacagttatattcagctgaactttttctaaggtttctcttagtttttagtatcgggcataacatcagaataactttctcaaatctgcttgtggattttgagtttagcaagttccttttttctgtctctgcgttctctgacttaacataaacttttgcttcttcccactcagcaaaacgctaagcatgataaagtacaaaggtttaaattcaatattgaattcaatatattcaatggatactttcaagaattatatgagcttataaacaaccagcatgatgatagaacgatccaaagaatactacataagttgagcttTGTA-GCC-TTGCACC------TAT-TAT-GTACT-CGTCGGAAATTA-CCCGACTACGAGGAAAACG-GTGG---GACAATTCCGGACA-GCAT-AAAC--A--AACCAT-CA--TTTGC------A-TTG---ATTT-AGACATTT--GAT-CACTTATT--C-AACTAGG-AAAT--T--T-ACA---------T--TCA-CTCAAC-TTTTCTAGG--CTCTCTTAGTcc
gi|11 : GGTGTTTC-AAAATGTG----AC-TTGTAATTGATT-AGAA-TTTTTTTCACTTTTA--TAT--T----AGAAAATAATTT-ACAGAA--TAA-C-CAATTATATCATT-TTCTATATGCATGCAAGTTTTCATTGAATA-TTGTA-GCC-TTGCACC------TAT-TAT-GTACT-CGTCCGGAATTA-CCTAACT
gi|12 : TCCC--GA-ATAC--ACCAACTG-TCCGGAATT--AC-CTCGGA-tg
gi|13 : ttaacgtatgttttatgagaataaagaaaattttaagttatatccggtgctatgattatgctggaaaT-AGACGTTT--AAT-CACTTAAT--CAA-CT--G-GACA--G--T-ATA---------TGTTCA-CTTAAC-TTTTCTAGG--TTCTCCTAGTCTTTCCATACC--GCAA-TTTCCCAAAACTA-GAA-AA---T-Atgtccct
gi|14 : -ATA-G-ACAA-AGGGA-------AAGT-AGT-CAT--ATTTCATAAG-AAA-T-C-TG--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-
gi|15 : tatttacttaAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACA-GTCCG--GA-AT-T--ACCCGCTG-TCCGGAAAT--AC-C-CGGA-TATC
gi|16 : A--TT-GAAT----TC-AAT------A-T-TTCAA------TCG----------G-A-----ATACATGTACAC-T-TT--AGAA-TT-TTGATA-A---AAc
gi|17 : -C-TT--GCATT-GTCCA--GA-GT-T--ACCCAATG-TCCGGAATC--AC-C-CGGA-TATCca
gi|18 : A------TCG----------A-A-----AT--------AC-T-TC--GGAA-TT-TTGAT--G---AGACAATGA-
gi|2 : ACTATGTTTTCAAATGTAT--CAGAA-AGCTAGTTTGT---GACGATTACAAACGATGTATTAATACAAACAGATTGATCTATATCTTTTTAGGAATCTT-------AT---ACTGTTGTG-CCACTTTCTTAATTT---GGATCCGCCTACCGTAT--TATTAATTTTCGAT-GTTTGAGATTTTTGGTGTTTC-AATATTTG-----CAT-GTAATTGATTTAGAAATGTTTTTCACTTTCA--TAT--TTTCGAAAAATTAATTT-ACAAAAAATAAAC-CGATTGTG-CATT-TTCTATATGCATACAAGTTTTCATC--ATA-TTGTAAGCC-TTGCACC------TAT-TAT-ATATTTCGTCCGGAATTA-CCCGACTACAAGGAAATCG-GAGG---GGTAATTCCGGACA-GCGT-GAACAAA--AACCAT-TA--TTCCC------A-TTG---ATTT-AGACGTTT--AAT-CACTTAAT--CAAACT--G-ACAA--TAAT-ATG---------T--TCA-CTTAAC--TTTCTAGG--TTCTCTTAGTCTTTTCATACC--GCAA-TTTCCCAAAACTA-AAA-AA---T-ATT------TACGCTT-GTGA--ATTGAGTTT-AG-----A------TTTTTTCC---TTCTTC------GTCTCC--------------C-GTTTG-----A--TT-TTCCC-----G-----------------CA-AA-A-----TAAGCAT--TGCCAAAGCTAC-AAAGGT-----------CC-AA---AGTTT--CAATA--TT-GAAT----TC-AAT------A-T-TGCAA------TCG----------G-A-----AT--------AC-TGTT--AGAA-TT-TTGATA-A---AAACAATGA-TA--AA-GGAAA-CA--AG-GA--CA-AC--AT--AA-GAT-CAAAA--AA----A-CA--G-CGA-CTT--TATATT-A-TAGATATTGTC-AAG-G-AAAA-AGGGT-------AAGT--GT-CG---ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCC-CTGATCCGGAATT--AC-C-CGGA-TATC
gi|3 : aACTAATTTTCGAT-GTTTGCGATTTT--GTGTTTC-AACATATGGTTTATATTGTAATTGATTTAGAAATGTTTTCCACTTTCA--AAT--T----AGAAA-CAATTTTACAGAA--TAA-A-CTATTATATCATTCTTCTACATGTATGCAAGTTTTCATTGAATA-TTGTA-GCC-TTGCACC------TAT-AAC-GTACT-CATCCAGAATTAACCCGACTACAAGGAAAACG-GTGG---GGTAATTCCGGGCA-GCAT-AAACAAA----CCCG-CA--TTTCCTGAACCA-TTG---ATTA-AGATGTTT--CAT-CACTT-GT--CCAACT--G-GAAAATT--T-ATA---------T--TTA-CTTAAC-TTTT---GG--TTCTTTTAGACTTTTGATACC--GCAA---------AACTA-GAA-AA---T-ATT------TACGCTT-GTGA---TTAAGTGT-AG-----A------TTTTTCCC-TTTTCTTC------GTCTGC--------------C-TTTTA-----AA-TT-TTCCC-----G-----------------CA-AC-A-----TAAACA---TG-CAAAG-TAC-AAAGGT-----------C--AA---AGTT---CAATA--ACTGACT----TC-AGT------A-T-TTTAT------TCG----------G-A-----AT--------AC-T-TC--GGAA-AT-TTGATA-C---GA-CAATGA-TT-TAA-GAAAA-CA--AAAGA--TA-TT--AG--AA-GAT-TTAAA--AA----A-----T-CAA-ATT--CAT-TT-A-TAAATA-TGTC-ATA-A-ACCC-TGGGA-------AAGT-AGA-TGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACC
gi|4 : TTGGTGTTTC-AACATGTG----AT-TTGTAATTGATTTAGAAATGTTTT-CACTTTTA--TAT--T----AGAAAATAATTT-ACAAAA--TAA-C-CAATTATATCATT-TTCTATATGCATACAAG------------A-TTGTA-GCC-TTGCACC------TAT-TAT-GTACT-TGTCCGGAATTA-CCCGACTACAAGGAAAACG-GTGG---GGTAATTTCGTACA-GCAT-AAAC--A--AACCTT-TA--TTTCC------A-TTG---ATAT-AGACATTT--AAT-CACTTATT--C-AACTG-G-AAAA--T--T-ATA---------T--TCA-CTTAACTTTTTCTAGG--TTCCTTTAGTATTTTAAT-CC--G---------CAAAACTAGGAA-AA---T-A--------TAC-CGT-TTGA--TTTTA-TTT-AG-----A------TTTTTTCT-TTTTCTTG------GTCTGC--------------CTTTTTA-----A--AT-TTCCC-----A-----------------CA-AATAAT---TAAGCA---TG-CAAGG-TAC-AAA-GT-----------CC-AA---AGTTC--AAATG---A-GAA-----TC-AAT------A---TTCAA------TCG----------A-A-----AT--------AC-T-TC--GGAA-TT-TTGAGT-A---AAACAATGA-TATTAA-GAAAAGCA--AA-GA--CA-AT--AG--AA-GAT-CCAAAACAG----A-CA--T-CGA-CTC--TAC-TTAA-TAGATC-TATC-ACA-G-ACAA-TGGGA-------AAGT-AGT-TGT--ATTTCATACG-AAG-T-C-TT--GAACT-GTCCA--GA-AT-T--ACCCGCTG-TCCGGAATT--AC-C-CGGA-TATC
gi|5 : TGA---GATAATTCCGGACA-GCAT-AACCAAAGAAATCATGTA--TTTCA------AGTTGTAAATTTTAGACGTTTTGAAT-CACTTGATTTCAATCT--GGAAAA--A--T-ATACATGTCGTGT--TCA-CTTAAC-TTTTCTAG---TTCTCTTAGTCTTTTC-TACC--GCAACTTTCCCAAAACTA-GAA-AAAAGT-ATG------ACCGCTTTGTGA--TTTGAGTTTTAGGATTCA------TTTTTTCT-TTTTCTTTTGTTCTGTCCTC--------------A-TCTTATAAGTA--TT-TCCCT-----GTCCCAAAATAAGCATGTCA-AA-AGTAACTAAACGGACTC-CAAAG-TAT-TAAGATAATATAAACTTCC-AACTTAGTAT--CAATG--CG-GAAT----TA-AGTTACTGAA-T-TTCAAATATTTTCGAGAAGTCCCAG-ACATGCAT--------AC-T-TT--CGAA-TT-T-GATA-ATTAAAACA-TGA-TA-TAA-G--AA-C---AA-GA--CA-ACCTAGGAAA-GCG-CAAAA--AAGGAGA-CA----CGA-CTTCGTAT-TT-AGTAGATA-T-TC-ACA-G-AAAA-AAGGCGCTGTTTACGT-CTT-CGTTGTTTTCATAAG-AAA-TAC-TTTGAAACTGGTCCGGTGACAT-T--ACCCc
gi|6 : AACGTGGGG---GGTAATTCCGGACA--CAT-AAACAA-----CCAT-TAATTTCCC------A-TTG---ATTT-AGACGTTT--A-T-CACTTATT--CAAACTTTG-AAAA--T--TTATA---------T--TCA-CTTAAC-TTT-CTAGG--TTTT--------------ACC--GCAA----------ACTA-GAA-AA---TTATT------TACGCTT-GTGA--ATTGAGTTT-AG-----AT-----TTTTTTCT-TTTTCTTC------GTCTTA--------------C-CTTTA-----AATTT-TTCCC-----G-----------------GAGAA-A-----TAAGCA---TG-CAAAG-TACAAAAGGT-----------CCAAA---AG--T--CAATAATTC-AAAT----TCAAAT------ATT-TTCAA------TCG----------G-------AT--------ACTT-TC--GGAATTT-TTGAT-------AACAATGA-AT-TAA-GAAAA-CA--AA-GAATCA-AC--AGA-AA-GATCCAAAA--AA----A-CA--TCCGA-CTT--TAC-TA-A-CAGATA--GTCAACA-GTAGAA-AGGGA-------ATGT-AGT-TGT--ATTTCATAAG-AAGTT-C-TT--GAAC--GTACG--GA-AT-TAAACCCGCTG-TCCG
gi|7 : CCAAAACTA-GAA-AA---T-ATT-------ACGCTT-GTG---GTTGAGTTT-AG-----A------TTTTTTTCGTTTTCTTA------GTCTGC--------------C-TTTTC-----A--TT-TTCCC-----A-----------------CA-AA-A-----TAAGCA---TG-CAAAG-TAC-AAAGGT-----------CC-AA---AGTTCAATAATA--TT-GAAT----TC-AGT------A-T-TTCAA------TCG----------G-A-----AT--------AC-T-TC--GGAA-TT-TTGATA-A---AA-CAATGA-TA-TAA-GAAAA-CA--AA-GA--CA-AC--AG--AA-GAT-CCAAA--AA----A-CA--T-CGA-CTT--TAT-TT-A-TAGATA-TGTC-ACA-G-AAAA-AGGGT-------AAGT-AGT-CGT--ATTTCATAAG-AAG-T-C-TT--GAACT-GTCCG--GA-AT-T--ACCCGCTG-TCTGGAATT--AC-C-CGGA-TATC
gi|8 : AAGGT-----------CC-AA---AGTT---CAATA------AATGGTGTC-AAT------A-T-TTCAT------TTG----------G-A-----AT--------AC-A-TC--GGAA-TT-TCGA-A-A---AGACAATGA-TA-TAA-TAAAA-CC--AG-GA--CA-AC--AG--AA-GATCCGAAA--AA----A-CA--T-TGA-ATT--TAT-TT-A-TAGATA--GTC-TCA-G-ACAA-AGGGA-------AAGC-AGA-TGC--ATTTGATAAG-AAG-T-C-TT--ACGCT-GTCCG--GT-AT-T--ACCCAATG-TCCAGAATT--AC-C-C-GA-TATCc
gi|9 : A------TCG----------GTA-----AT--------AC-T-TC--GGAAATTATTGATTTA---AAACAATGAATA-TAAAGAAAA-GA--AA-GA--CATAC--AG--AA-GAT-CAAAA--AA----AACACTT-CGAGCTT--TAT-TT-T-AAGATA-TGTC-ACATG-AAAATAGGGC-------AAGTTAGT-CGT--ATTTCATAAGAAAG-T-C-TT--GAACT-GTCCG--GA-AT-T--A-CCGCTG-TCCGGAATT--AC-C-CGGATTATCgg