lowQualScore : 1 111 11 333 11 111 1 7777777777 1 2 1 4 333 11 111 22222222222222 111 1 7777777 1 1 1 1 22 222 4444 1 111 1 1 2222 1 1 1 1 11 11 11 11 1 55555555555555555 33 111 1 2 1 1 1 222 1 3 11 333333 4 1 1 1 1 33 888888888 3333333333 4444 2 2
lowQualScore : 3 6 8 888 1 66 5 44 3 7 4 3 44 3 3 55 5 333 33 3 555 9 0 3 2222222222 7 0 0 3 0 111 3 55 000 66666666666666 3 777 3 6666666 7 3 5 3 3 55 333 0 1111 3 777 2 3 8888 3 5 2 1 8 6 0 9 2 0 0 8 2 11 99 8 8 99 11 0 5 8 44 1 66666666666666666 5 8 8 0 8 0 5 3 8 88 7 8 444 0 2 7 5 0 8888 3 6 0 3 444 0 0 33 3 333333 7 7 0 7 3 5 55 5 55 000000000 3 4444444444 6666 8 0
lowQualScore : . . . ... . .. . .. . . . . .. . . .. . ... .. . ... . . . .......... . . . . . ... . .. ... .............. . ... . ....... . . . . . .. ... . .... . ... . . .... . . . . . . . . . . . . . .. .. . . .. .. . . . .. . ................. . . . . . . . . . .. . . ... . . . . . .... . . . . ... . . .. . ...... . . . . . . .. . .. ......... . .......... .... . .
lowQualScore : 3 7 5 555 4 99 0 66 3 2 8 3 66 3 5 00 0 555 88 2 000 0 0 2 2222222222 0 0 0 2 0 000 2 22 888 55555555555555 2 777 3 3333333 3 3 0 3 3 77 333 7 7777 3 777 0 3 3333 3 2 5 2 8 5 0 8 5 2 0 0 2 00 22 0 0 00 00 8 4 0 00 4 00000000000000000 6 0 0 8 0 8 0 2 0 22 8 0 000 0 5 5 8 0 2222 2 0 0 2 222 0 0 22 2 333333 3 3 0 3 3 0 55 0 55 000000000 0 5555555555 0000 5 0
consensus : NAACTACTCAGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATTTTTTG--CTC--TGCACGAAAACTGAAAANATTCAATTATTGGCCGAAGT-TTTAGGTTGAGGATTT--GTTAAA--ACTTCGTGATAACATTTCTTT-TAAAGTATTTCAACCATTAAACCCTTCGATGG-CTACATAA-TCTGCAGATTTCCGACAGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCT---NAAAAAAAC-CCCCA-AAANAACAA-CATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-GCATATT---CGTTTTTGTTTTTT--AATTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCG-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGCCANGGCGCACG--A-GG-GG-TCAGAC--AACAGCTGAACCCC-CAAACA-GTGTGTCCCAG-----------------CCAC-CCAT-ATT-GCTGTCTAACGAACAATTGCAACAGGTTTCACAAGCCGTCGCAGAA-ATC--ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAGCC-TTG-GACGATCATAATACA-GGTACAGAACCTG-CTCGTAATTATCCTTATCAAACTAG-TTATGACCATGATTTG-GGACTCGTGGTGCNNAACAAATGTGAAGTCCAATCTGTCGGAAATCGCAGNTNGTGACTNNNCATCGATTTTAGGGCTAATGGTCCGAAAATTCAAATGGGGC
Reference ( gi|1 ) : TAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGGTGAATGTTTTGA-CTC--TGCACGAAAACTGAAAACATTAAATTATTGGCCGAAGT-TTTAGGTTGAGGATTTTGGTT-AT--ACTTCGTGATTACA-TTCTTT-TAAAGTATTTCAACCATTAAACCCTTCGATGGCCTACAT-A-TCTGCAGATTTACGACAGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCT---AAAAAAAGC-CCCCA-AAAT------CATCGTAATTATTATC-ATATACACTGAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAAATTGCAT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACATAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-TGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCGCACG--A-GG-G--TCAGAC--AACAGCTGAAACCC-CAAACA-GTGTGCCCCAG-----------------CCAC-CCAT-ATT-GCTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATCA-ATGACCAGGCA-GAATCAGC---ACG-TCCCCACTCGTGC-CTCTTCTACCAAAC-TTGCCGATAGAGCCTTTG-GACGA-CATAATACA-GGTACAGAACCTGCCTCGTAATTATCCTTATCAAACTAGTTTATGACTATGATTTG-GGACTCATGGTGCCTAACAAAT-TGAAATCCAA---------AATTGTAAATGGTG--TATACATCAA--TTAGGGTTATTGGT-CGAAAATTCAAATGGGGCT
gi|2 : AACTACTCAGAGTTAAAGCCAACA-ATAAAAGTGTCATTGAGCCGTTTT-CCATTGTTTTGCCATTTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TTAGTTTTACCAACGGCATACTTTGTGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATGTTTTGC-CTC--TTCACGAAAACTGAAAACATTCAATTATTAGCCGAAGTGTTTAGGTTGAGGATTT--GTTAAA--ACTTCGTGATAACATTTCTTT-TAAAATATTTCAATCATTAAACCCTTCGATGG-CTACACAA-TCTGCAGATTTCTGACGGATTCAACTTCACAAGTTTTTCTGTACACCACCAAAAA---AAAAAAAAC-CCAAA-AAACAACAA-CATCGTAATTATTACC-ATATACACTTAATTATTACTT-GCGTCTGAGATTCTTCG-ACATACATGT-GCATATT---CATTTTTGTTTTTTG-AATTGCAT-TTC-A-TATCGAGCACTGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGGAATGTCAAGGAGGCCACCCAT-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCACACG--A-GGTG--TCCGAC--AACAGCTGAACCCC-CAAACA-GTGTGTCCCAG-----------------CCAC-CCAT-ATT-ACTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATC--ATGGCCAGGCA-GAATCAG--------------CTCGTGC-C-CTACTACCAAGC-TTGCCGATAGAGTCTTTA-GACGATCATAATACA-GATACAGAACCTGAGT--TAATAG--CTTATCAAACTAG-TTATGACCATGATTTGCGGACTCATGGTGCCTAACAAA--TGAAATCCAA---------AATTGTAACTGG-GACTTTACATCAATTTTAGGGCTA-TGGTCCGAAAATTCAAATGGGGC
gi|5 : CTACTCAGAGTTAAAGCCGGTTTATAAAAGTGTCATTGAGCCGTTTT-CCATT-TTTTGCCAT-TCCGTCTTCCTATAAGGGCT--GCCCCGGCAAATCG--TTTACCAACGGCATACTTTGGG-AT-T--TAGCCAAACACAG-CAAAAACTGTG-A--CGTCCATGCGCAGTTTCGTCAGTCGTCTGCA-AAAATTCA-GGTAAGACATGTTGAATTTTTTC--CTC--TGCACGAAAACTGAAA-C-TTCAATTATTGGCCGAAGT-TT-AGGTTGAGGATTT--GTT-ATAAACTTCGTGATAACA-TTCTTT-TAAAGTATTTCAACCATT-AACCCTTCGATGG-CTACATAA-TCTGC-GATTTCCGACAGATTGAACTTCAC-A-TTTTTCTGTACA-CG--AGGCT---CAAAAAA
gi|9 : CTACTCAGTGTTAAAGTCGGTT-ATAAAAGTGTCATTAAGCCGTTTTTTCTTTGTGT-GCAATCTCCGTCACTCTA--TGGGCCCTGCCCCGGCAA-ATAGTTTCATCAACTGCATACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-ATACGTAGATGTGTCAGTCGTCTGCACAAAATTa
gi|11 : TACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTGTTTCCATTGT--------------CTTCCTA--AGAGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|13 : ACTCAGTGTTAAAGCCGGTT-ATAAAAGTGC--TTAA------------TTGT---GCCATCGCTGTCATCCTA--AGGGCCCTGCCCCGGCAA-TTAGTTTCACCAACGGCAAACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-AAACGCAGATTCGTCAGTCGTCTGCA
gi|3 : CTCAGAGTTAA-GCCGGTT-ATAAA-GTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCC-GGCAA-TCAGGTTTAC-AACAGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGTTCGCACAAAATTCAAGGTAAGACAT-GTGAATTTTTTAACCTC--TGCACG-AAACTGAAACAATTCAATTATTGGCCGAAGT-TTTAGGTTGAGGATTT--GTTAAA--ACTTCGTGATAACATTTCTTT-TAAAGTATTTCAACCATTAAACCCTTCGATGG-CTACATAA-TCTGCAGATTTCCGACAGATTGAACTTCACAT-TTTTTCTGTACACGA--AAGCTTAAAAAAAAAACAACCCA-AAAA------CATCGT-ATTATTATCAATATACACTTAATTATTACTT-ACGTCTGCGATTCTTCGAACATACATGTAACATATTTAATGTTTTTTTTTTTT----TTCTGC-TTCAA-TATCGAGCAACGGAGCAC----TAAATCTTGCCGTTAACCTAATGCCGAAACGAAAGAATGCGCAACTAACACTGGTTGGCAAGGTC-AGGATGCTGCCCAATAGGCTTGGACATG-CAGATGCATCTCACAATATGGCGCACG--A-GA-GGCTCAGAC--AACAGCTGAACCCC-CAAACAGGTGTG-CCCAG-----------------CCACTCCAT-A-T-GCTGTCTAACGAACAATTGCAACAGGTTTCACAAGCCGTCGCAGAA-ATC--ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGAGCTCTC-TCTACC-AGC-TTGCCGATAGAGC--TTGTGACGATCATAATACA-GGTACAGAACCTG-CTCGTAATTATCCTTATCAAACTAG-TTATGAC-ATGATTTG-GGACTCAT
gi|12 : atatattAAAGTGTCATTGAGCCGTTTT-CCATTGTT--GCCATCTCCGTCTTCCTA--AGGGCTCTACCCGGGCAA-TCAGTTTTTCCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|10 : GTGTCGTCGAGCCGTTTT-CCATTGTTGTGCCATCTGCGTCTTCCTA--AGGGATCTTCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-AAGCGAAGTTTCGTCGGTCGCTTGCACAAATTTCAAGGTAAGACATGTTGAATGTTTTG
gi|6 : CAACGTCATACTT-GTGAATAT--TAGCCAAACATGGTCAAAGACCGTA-AACCGTG-ACG-------TCACCAGTAGTCTGCACAAAATTCAAGATAAGACATTTTGAATTTTTT----TCAATGCACGAAAAATGAGAAAATTAAATTATTGGCCGCAAT-TTTGGATTCAGGGTTT--GTTGAA--ACATTGTGATAACA-TTTTTCATAAAGTATTTCAGCCATTAAATCCTCAGATGG-CTCCGT-AGTCTGCAGATTTCAGACAGATTGAACTTCATAA-ATTTTCTTTACA-CG--AGTCT---CAAA----T-CGCCACAAATAACAAACATCGTAAGTATTATC-ATATACATTc
gi|17 : ACTTTGGGGATAT--TAGCCAAACACGG-C-CAAACCGTG-A--CGTC-ATAC
gi|7 : ATTTTCGGGATAT--TAGACAAACACAG-TTAAAATTGTT-A--CGTC-AAACGCAA-ATCGTCAtttggctcaccagtagtgttcagcag
gi|16 : ccgttgttttccgtcacccaagagcttaatacccttttagagtcatctatatagtgttgTTGCGGATATATTAGCTCAACACTG-CCAAA--TGTGAA--CGTC-ATACGagaaaatcaatatatgtctatgcacttgaaatttataacatcctattgtatgatagatttgtttttttatctgcgaagtggtatcatttttttaaaggaattttgtcgatggctgcatactttgctcatttcagtcggattaa
gi|4 : agttattcctagagtgtatagcaATTATTACTTAGCGTCTGCGATCTTTCG-ACATACATGT--CATATT---CATTTTTGTTTT---GAATTGCATGTTC-AATATCGAGCAC-GGAG-ACACCCTAAATCTTGCCA-TAAC-TAATGC-GAAACGAAAGAAATC-CAAC-AACACTGG-TGGCAAGGTCAAGGAG-CCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-AAATCATGGCGCACG--A-AG-G--TCAGACAAAACAGCTG-AACCC---AACA-GTGTGCCCCAG-----------------CCAC-CCATAATT-GCTGTCT-ACGAACAATTGCAACAGGTTTCACAAG-CGTTGCAGAA-ATC--ATGGCCAGGCA-GAATCAGC---ACGTTCCCCA-TCG-GC-CTCTTCTACCAAGC-TTGCCGATAGAGCC-TTG-GACGATCATAATAC--GGTAC-GAACCTG-CTCG----TATCGT-----AACTAG-TTATGACCAatgtctagtttttgccaatattc
gi|15 : ACAATGCCGAAAAGAAAGAACTCTCAACCAACACTGG-CGGCAAGGCCTAGGAGGGGACCCAA-GGGCCCGGGCAAACCAGATGCATCT-ACGCC--TGCGCACG--
gi|14 : caagcacttggaagttgtgattaacaatcattCCAGATGCATCT-ACGCCTGCGCACGCA--A-GG-GG-TCAAAC--ACCAGCTGAACCCC-CAGAC---TGTGGCTCAG-----------------CC-C-CCAT-ATT-G---TCTAACGAACAATTACAACAGGTGTCAGAAGCCGTTGCAGAG-ATC--ATGGCCAGGCA-GAATCAGC---Ac
gi|8 : GTGCACGCAATGG-G--TCAAAC--AGCAGCTGAAACCTTCAACCT-TTGTGTCCCAGGCCCCCCCCCCCCCCCCCCCC-CCCT-ATTTGCTATCCAACGAGCAGTTGCAACAGATTTCACAAGTTGTCGCTGAATATCATAT--CAAAGCAGGGACTACCTAAACG-TGCCCA-TTGGGC-CCTTACTACCAAGTGTTGGCCATGG------TG-AAATC-CCTAATACAGGGTACAG
gi|5 : TTTG-AGCCTCGTG-TACAGAA-AAATGTGAAGTTCAATCTGTCGGAAATCGCAGATTATG--TAGCCATCGA----AGGGTTAATGGT-TGAAA
Alignments
lowQualScore : 111111111
lowQualScore : 1 111 111 11 11 111 11111 1 33333 1 1 1 22 111 3333 1 111 1 2222 11 11 11 44444444444444444 111 1111 11 11 1 1 44 666666666 2222 11 11 1
lowQualScore : 5 5 333 0 66 4 44 1 3 1 1 3 44 3 2 1 4 666 5 99 7 66 6 00 1 2 99 66 111 7 1 1 6 3 1 0 8 22222 11 777777 0 44 55555 3 0 0 0 00 777 0000 2 0 111 6 0 1111 22 8 5 3 8 6 8 6 22 33 55 5 6 99 6 1 3 6 66666666666666666 3 6 6 6 3 1 6 6 6 111 8 8 8 8 3 8 0 8 0 9999 8 88 88 0 22 9 0 33 3 0 2 3 6 22 33 6 000000000 6 6 77 1 3333 333 6 88 99 5
lowQualScore : . . ... . .. . .. . . . . . .. . . . . ... . .. . .. . .. . . .. .. ... . . . . . . . . ..... .. ...... . .. ..... . . . . .. ... .... . . ... . . .... .. . . . . . . . .. .. .. . . .. . . . . ................. . . . . . . . . . ... . . . . . . . . . .... . .. .. . .. . . .. . . . . . .. .. . ......... . . .. . .... ... . .. .. .
lowQualScore : 7 4 444 1 11 4 22 8 1 0 1 1 22 1 4 4 7 666 7 22 3 55 7 22 7 5 22 55 777 3 0 7 7 5 0 8 0 44444 88 888888 0 22 00000 2 0 0 0 55 555 2222 0 0 000 5 0 2222 00 8 0 2 0 0 0 7 88 00 77 2 7 22 7 0 5 7 77777777777777777 2 7 7 7 0 0 7 7 7 777 0 0 8 0 8 8 8 0 8 2222 0 88 88 8 55 2 8 88 2 0 5 3 0 00 00 0 000000000 0 0 00 0 5555 000 0 55 55 0
consensus : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTTG--C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGG-CTACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTNAAAAAAACCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTG-AATTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAAT-TGAAATCCA---------AAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTANTGGTCCGAAAATTCAAATGGGGC
Reference ( family-5931 ) : NAACTACTCAGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATTTTTTG--C-TCTGCAC--GAAAACTGAAAANATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGG-CTACATAATCTGCAGATTTCCGACAGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTNAAAAAAACCCCCA-AAANAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-GCATATT---CGTTTTTGTTTTTT--AATTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCG-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGCCANGGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTTTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCGTGGTGCNNAACAAATGTGAAGTCCAATCTGTCGGAAATCGCAGNTNGTGACTNNNCATCGATTTTAGGGCTAATGGTCCGAAAATTCAAATGGGGC
gi|1 : AACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGGTGAATGTTTTGA-C-TCTGCAC--GAAAACTGAAAACATTAAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTTTGGTT--ATACTTC---GTGATTACA-TTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGCCTACAT-ATCTGCAGATTTACGACAGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTAAAAAAAGCCCCCA-AAAT----------CATCGTAATTATTATC-ATATACACTGAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAAATTGCAT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACATAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-TGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCGCACG--A-GGG-TCAGACAA--CAGCTGAA-ACCCCAAACAGTGTGC-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATCAATGACCAGGCA-GAATCAGC---ACG-TCCCCACTCGTGC-CTCTTCTACCAAAC-TTGCCGATAGAG-CCTTTG-GACGA--CATAATACA-GGTACAGAACCTGCCTCGTAATTATC--CTTATCAAACTAGTTTATGACTATGATTTG-GGACTCATGGTGCCTAACAAAT-TGAAATCCA---------AAATTGTAAATGGTG--TATACATCAA--TTAGGGTTATTGGT-CGAAAATTCAAATGGGGC
gi|10 : tGTGTCGTCGAGCCGTTTT-CCATTGTTGTGCCATCTGCGTCTTCCTA--AGGGATCTTCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-AAGCGAAGTTTCGTCGGTCGCTTGCACAAATTTCAAGGTAAGACATGTTGAATGTTTTG--C-t
gi|11 : TACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTGTTTCCATTGT--------------CTTCCTA--AGAGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|12 : AAAGTGTCATTGAGCCGTTTT-CCATTGTT--GCCATCTCCGTCTTCCTA--AGGGCTCTACCCGGGCAA-TCAGTTTTTCCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|13 : ACTCAGTGTTAAAGCCGGTT-ATAAAAGTGC--TTAA------------TTGT---GCCATCGCTGTCATCCTA--AGGGCCCTGCCCCGGCAA-TTAGTTTCACCAACGGCAAACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-AAACGCAGATTCGTCAGTCGTCTGCA
gi|14 : CCAGATGCATCT-ACGCC--TGCGCACGCAAGGGG-TCAAACAC--CAGCTGAA-CCCCCAGAC--TGTGG-CTCAG-----------------CC-C-CCATA-TT-G---TCTAACGAACAATTACAACAGGTGTCAGAAGCCGTTGCAGAG-ATC-ATGGCCAGGCA-GAATCAGC---A
gi|15 : AATGCCGAAAAGAAAGAACTCTCAACCAACACTGG-CGGCAAGGCCTAGGAGGGGACCCAA-GGGCCCGGGCAAACCAGATGCATCT-ACGCC--TGCGCACG--
gi|16 : caagcacttggaagttgtgattaacaatcattacTTGCGGATATATTAGCTCAACACTG-CCAAA--TGTGAA--CGTC-ATACGc
gi|17 : agttattcctagagtgtatagcaACTTTGGGGATAT--TAGCCAAACACGG-CC-AAACCGTG-A--CGTC-ATACatgtctagtttttgccaatattc
gi|2 : AACTACTCAGAGTTAAAGCCAACA-ATAAAAGTGTCATTGAGCCGTTTT-CCATTGTTTTGCCATTTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TTAGTTTTACCAACGGCATACTTTGTGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATGTTTTG--CCTCTTCAC--GAAAACTGAAAACATTCAATTATTAGCCGA-AGTGTTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAATATTTCAATCATTAAACCCTTCGATGG-CTACACAATCTGCAGATTTCTGACGGATTCAACTTCACAAGTTTTTCTGTACACCACCAAAAAAAAAAAAACCCAAA-AAACAAC-----AACATCGTAATTATTACC-ATATACACTTAATTATTACTT-GCGTCTGAGATTCTTCG-ACATACATGT-GCATATT---CATTTTTGTTTTTTG-AATTGCAT-TTC-A-TATCGAGCACTGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGGAATGTCAAGGAGGCCACCCAT-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCACACG--AGGTG-TCCGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-ACTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC--------------TCGTGC-C-CTACTACCAAGC-TTGCCGATAGAGTCT-TTA-GACGAT-CATAATACA-GATACAGAACCTG------AGTTAATAGCTTATCAAACTAG-TTATGACCATGATTTGCGGACTCATGGTGCCTAACAAA--TGAAATCCA---------AAATTGTAACTGG-GACTTTACATCAATTTTAGGGCT-ATGGTCCGAAAATTCAAATGGGGCtttggctcaccagtagtgttcagcag
gi|3 : CTCAGAGTTAA-GCCGGTT-ATAAA-GTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCC-GGCAA-TCAGGTTTAC-AACAGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGTTCGCACAAAATTCAAGGTAAGACATG-TGAATTTTTTAACC-TCTGCAC--G-AAACTGAAACAATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGG-CTACATAATCTGCAGATTTCCGACAGATTGAACTTCACAT-TTTTTCTGTACACGA--AAGCTTAAAAAA------A-AAACAACCCAAAAACATCGT-ATTATTATCAATATACACTTAATTATTACTT-ACGTCTGCGATTCTTCGAACATACATGTAACATATTTAATGTTTTTTTTTTTT----TTCTGC-TTCAA-TATCGAGCAACGGAGCAC----TAAATCTTGCCGTTAACCTAATGCCGAAACGAAAGAATGCGCAACTAACACTGGTTGGCAAGGTC-AGGATGCTGCCCAATAGGCTTGGACATG-CAGATGCATCTCACAATATGGCGCACG--AGAGGCTCAGACAA--CAGCTGAA-CCCCCAAACAG-GTGTGCCCAG-----------------CCACTCCATA--T-GCTGTCTAACGAACAATTGCAACAGGTTTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGAGCTCTCT-CTACC-AGC-TTGCCGATAGAG--C-TTGTGACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGA-CATGATTTG-GGACTCAT
gi|4 : atatattATTATTACTTAGCGTCTGCGATCTTTCG-ACATACATGT--CATATT---CATTTTTGTTTTG---AATTGCATGTTC-AATATCGAGCAC-GGAG-ACACCCTAAATCTTGCCA-TAAC-TAATGC-GAAACGAAAGAAATC-CAAC-AACACTGG-TGGCAAGGTCAAGGAG-CCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-AAATCATGGCGCACG--AAGG--TCAGACAAAACAGCTGAA-CCC---AACAGTGTGC-CCCAG-----------------CCAC-CCATAATT-GCTGTCTA-CGAACAATTGCAACAGGTTTCACAAGC-GTTGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACGTTCCCCA-TCG-GC-CTCTTCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATAC--GGTAC-GAACCTG-CTCG----TATC--GT-----AACTAG-TTATGACCA
gi|5 : CTACTCAGAGTTAAAGCCGGTTTATAAAAGTGTCATTGAGCCGTTTT-CCATT-TTTTGCCAT-TCCGTCTTCCTATAAGGGCT--GCCCCGGCAAATCG--TTTACCAACGGCATACTTTGGG-AT-T--TAGCCAAACACAG-CAAAAACTGTG-A--CGTCCATGCGCAGTTTCGTCAGTCGTCTGCA-AAAATTCA-GGTAAGACATGTTGAATTTTTTC--C-TCTGCAC--GAAAACTGAAA--CTTCAATTATTGGCCGA-AG--TTTAGGTTGAGGATTT--GTTATAAACTTC---GTGATAACA-TTCTTTTAAAGTATTTCAACCATT-AACCCTTCGATGG-CTACATAATCTGC-GATTTCCGACAGATTGAACTTCAC-A-TTTTTCTGTACA-CG--AGGCTCAAAAAAA
gi|6 : CAACGTCATACTT-GTGAATAT--TAGCCAAACATGGTCAAAGACCGTA-AACCGTG-ACG-------TCACCAGTAGTCTGCACAAAATTCAAGATAAGACATTTTGAATTTTTTT--C-AATGCAC--GAAAAATGAGAAAATTAAATTATTGGCCGC-AAT-TTTGGATTCAGGGTTT--GTTG-AAACATT---GTGATAACATTTTTCATAAAGTATTTCAGCCATTAAATCCTCAGATGG-CTCCGTAGTCTGCAGATTTCAGACAGATTGAACTTCATAA-ATTTTCTTTACA-CG--AGTCTC----AAATCGCCACAAATAACA----AACATCGTAAGTATTATC-ATATACATT
gi|7 : ATTTTCGGGATAT--TAGACAAACACAG-TTAAAATTGTT-A--CGTC-AAACGCAA-ATCGTCA---------AGAAAAT------CAATATATGT-------------C-TATGCACTTG-AAATTTATAACATCC---TATTGTATGATAGA-TTT--GTT-----TTT---TT---ATCTGCGAAGTGGTATCATTT-TTTTAAAGGAATT------TTG------TCGATGG-CTGCATACTTTGCTCATTTCAGTCGGATTAA
gi|8 : ccgttgttttccgtcacccaagagcttaatacccttttagagtcatctatatagtgttgGTGCACGCAATGGG-TCAAACAG--CAGCTGAAACCTTCAACCTTTGTGT-CCCAGGCCCCCCCCCCCCCCCCCCCC-CCCTA-TTTGCTATCCAACGAGCAGTTGCAACAGATTTCACAAGTTGTCGCTGAATATC-ATATCAAAGCAGGGACTACCTAAACG-TGCCCA-TTGGGC-CCTTACTACCAAGTGTTGGCCATGG-------TG-AA--ATCCCTAATACAGGGTACAG
gi|9 : CTACTCAGTGTTAAAGTCGGTT-ATAAAAGTGTCATTAAGCCGTTTTTTCTTTGTGT-GCAATCTCCGTCACTCTA--TGGGCCCTGCCCCGGCAA-ATAGTTTCATCAACTGCATACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-ATACGTAGATGTGTCAGTCGTCTGCACAAAATT
Alignments
lowQualScore : 1 111 111 11 111 11111 1 33333 1 1 1 11 111 1 1 111 1 2222 1 33 11 44444444444444444 111 1111 11 11 1 1 1 2222 11 2 1
lowQualScore : 1 5 5 333 0 66 4 44 1 3 1 1 3 44 3 2 1 3 666 5 99 7 6 00 1 2 99 88 3 111 1 1 6 5 3 1 0 0 8 22222 11 777777 0 3 55555 3 0 0 0 77 777 3 2 0 2 0 111 6 0 1111 0 8 5 3 8 6 8 6 11 44 55 5 6 99 6 1 3 6 66666666666666666 3 6 6 6 1 1 6 6 6 111 8 8 8 8 3 8 0 8 0 9999 8 88 88 0 22 9 0 33 3 0 2 3 5 1 3333 1 88 0 5
lowQualScore : . . . ... . .. . .. . . . . . .. . . . . ... . .. . . .. . . .. .. . ... . . . . . . . . . ..... .. ...... . . ..... . . . . .. ... . . . . . ... . . .... . . . . . . . . .. .. .. . . .. . . . . ................. . . . . . . . . . ... . . . . . . . . . .... . .. .. . .. . . .. . . . . . . .... . .. . .
lowQualScore : 4 7 4 444 1 11 4 22 8 1 0 1 1 22 1 4 4 0 666 7 22 3 7 22 7 5 22 33 5 777 0 7 7 7 5 0 7 8 0 44444 88 888888 0 2 00000 2 0 0 0 00 555 2 5 0 0 0 000 5 0 2222 0 8 0 2 0 0 0 7 00 00 77 2 7 22 7 0 5 7 77777777777777777 2 7 7 7 0 0 7 7 7 777 0 0 8 0 8 8 8 0 8 2222 0 88 88 8 55 2 8 88 2 0 5 3 5 0 5555 0 55 5 0
consensus : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTTG--C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTNAAAAAAACCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAA-TTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTATTGGTCCGAAAATTCAAATGGGGC
Reference ( family-5931 ) : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTTG--C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTNAAAAAAACCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAA-TTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTANTGGTCCGAAAATTCAAATGGGGC
gi|1 : AACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGGTGAATGTTTTGA-C-TCTGCAC--GAAAACTGAAAACATTAAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTTTGGTTA-TA-CTTC---GTGATTACATT-CTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGCCTACATA-TCTGCAGATTTACGACAGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTAAAAAAAGCCCCCA-AAAT----------CATCGTAATTATTATC-ATATACACTGAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAAATTGCAT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACATAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-TGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCGCACG--A-GGG-TCAGACAA--CAGCTGAA-ACCCCAAACAGTGTGC-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATCAATGACCAGGCA-GAATCAGC---ACG-TCCCCACTCGTGC-CTCTTCTACCAAAC-TTGCCGATAGAG-CCTTTG-GACGA--CATAATACA-GGTACAGAACCTGCCTCGTAATTATC--CTTATCAAACTAGTTTATGACTATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAAATGGTG--TATACATCAA--TTAGGGTTATTGGT-CGAAAATTCAAATGGGGC
gi|10 : tGTGTCGTCGAGCCGTTTT-CCATTGTTGTGCCATCTGCGTCTTCCTA--AGGGATCTTCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-AAGCGAAGTTTCGTCGGTCGCTTGCACAAATTTCAAGGTAAGACATGTTGAATGTTTTG--C-t
gi|11 : TACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTGTTTCCATTGT--------------CTTCCTA--AGAGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|12 : AAAGTGTCATTGAGCCGTTTT-CCATTGTT--GCCATCTCCGTCTTCCTA--AGGGCTCTACCCGGGCAA-TCAGTTTTTCCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|13 : ACTCAGTGTTAAAGCCGGTT-ATAAAAGTGC--TTAA------------TTGT---GCCATCGCTGTCATCCTA--AGGGCCCTGCCCCGGCAA-TTAGTTTCACCAACGGCAAACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-AAACGCAGATTCGTCAGTCGTCTGCA
gi|14 : CCAGATGCATCT-ACGCC--TGCGCACGCAAGGGG-TCAAACAC--CAGCTGAA-CCCCCAGAC--TGTGG-CTCAG-----------------CC-C-CCATA-TT-G---TCTAACGAACAATTACAACAGGTGTCAGAAGCCGTTGCAGAG-ATC-ATGGCCAGGCA-GAATCAGC---A
gi|15 : AATGCCGAAAAGAAAGAACTCTCAACCAACACTGG-CGGCAAGGCCTAGGAGGGGACCCAA-GGGCCCGGGCAAACCAGATGCATCT-ACGCC--TGCGCACG--
gi|16 : caagcacttggaagttgtgattaacaatcattacTTGCGGATATATTAGCTCAACACTG-CCAAA--TGTGAA--CGTC-ATACGc
gi|17 : agttattcctagagtgtatagcaACTTTGGGGATAT--TAGCCAAACACGG-CC-AAACCGTG-A--CGTC-ATACatgtctagtttttgccaatattc
gi|2 : AACTACTCAGAGTTAAAGCCAACA-ATAAAAGTGTCATTGAGCCGTTTT-CCATTGTTTTGCCATTTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TTAGTTTTACCAACGGCATACTTTGTGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATGTTTTG--CCTCTTCAC--GAAAACTGAAAACATTCAATTATTAGCCGA-AGTGTTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAATATTTCAATCATTAAACCCTTCGATGGC-TACACAATCTGCAGATTTCTGACGGATTCAACTTCACAAGTTTTTCTGTACACCACCAAAAAAAAAAAAACCCAAA-AAACAAC-----AACATCGTAATTATTACC-ATATACACTTAATTATTACTT-GCGTCTGAGATTCTTCG-ACATACATGT-GCATATT---CATTTTTGTTTTTTGAA-TTGCAT-TTC-A-TATCGAGCACTGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGGAATGTCAAGGAGGCCACCCAT-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCACACG--AGGTG-TCCGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-ACTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC--------------TCGTGC-C-CTACTACCAAGC-TTGCCGATAGAGTCT-TTA-GACGAT-CATAATACA-GATACAGAACCTG------AGTTAATAGCTTATCAAACTAG-TTATGACCATGATTTGCGGACTCATGGTGCCTAACAAA-TGAAATCCAAAATTGTAACTGG-GACTTTACATCAATTTTAGGGCTA-TGGTCCGAAAATTCAAATGGGGCtttggctcaccagtagtgttcagcag
gi|3 : CTCAGAGTTAA-GCCGGTT-ATAAA-GTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCC-GGCAA-TCAGGTTTAC-AACAGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGTTCGCACAAAATTCAAGGTAAGACATG-TGAATTTTTTAACC-TCTGCAC--G-AAACTGAAACAATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACAGATTGAACTTCACAT-TTTTTCTGTACACGA--AAGCTTAAAAAA------A-AAACAACCCAAAAACATCGT-ATTATTATCAATATACACTTAATTATTACTT-ACGTCTGCGATTCTTCGAACATACATGTAACATATTTAATGTTTTTTTTTTTT----TTCTGC-TTCAA-TATCGAGCAACGGAGCAC----TAAATCTTGCCGTTAACCTAATGCCGAAACGAAAGAATGCGCAACTAACACTGGTTGGCAAGGTC-AGGATGCTGCCCAATAGGCTTGGACATG-CAGATGCATCTCACAATATGGCGCACG--AGAGGCTCAGACAA--CAGCTGAA-CCCCCAAACAG-GTGTGCCCAG-----------------CCACTCCATA--T-GCTGTCTAACGAACAATTGCAACAGGTTTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGAGCTCTCT-CTACC-AGC-TTGCCGATAGAG--C-TTGTGACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGA-CATGATTTG-GGACTCAT
gi|4 : atatattATTATTACTTAGCGTCTGCGATCTTTCG-ACATACATGT--CATATT---CATTTTTGTTTT--GAA-TTGCATGTTC-AATATCGAGCAC-GGAG-ACACCCTAAATCTTGCCA-TAAC-TAATGC-GAAACGAAAGAAATC-CAAC-AACACTGG-TGGCAAGGTCAAGGAG-CCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-AAATCATGGCGCACG--AAGG--TCAGACAAAACAGCTGAA-CCC---AACAGTGTGC-CCCAG-----------------CCAC-CCATAATT-GCTGTCTA-CGAACAATTGCAACAGGTTTCACAAGC-GTTGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACGTTCCCCA-TCG-GC-CTCTTCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATAC--GGTAC-GAACCTG-CTCG----TATC--GT-----AACTAG-TTATGACCA
gi|5 : CTACTCAGAGTTAAAGCCGGTTTATAAAAGTGTCATTGAGCCGTTTT-CCATT-TTTTGCCAT-TCCGTCTTCCTATAAGGGCT--GCCCCGGCAAATCG--TTTACCAACGGCATACTTTGGG-AT-T--TAGCCAAACACAG-CAAAAACTGTG-A--CGTCCATGCGCAGTTTCGTCAGTCGTCTGCA-AAAATTCA-GGTAAGACATGTTGAATTTTTTC--C-TCTGCAC--GAAAACTG-AAAC-TTCAATTATTGGCCGA-AG--TTTAGGTTGAGGATTT--GTTATAAACTTC---GTGATAACA-TTCTTTTAAAGTATTTCAACCATT-AACCCTTCGATGGC-TACATAATCTGC-GATTTCCGACAGATTGAACTTCAC-A-TTTTTCTGTACA-CG--AGGCTCAAAAAAA
gi|6 : CAACGTCATACTT-GTGAATAT--TAGCCAAACATGGTCAAAGACCGTA-AACCGTG-ACG-------TCACCAGTAGTCTGCACAAAATTCAAGATAAGACATTTTGAATTTTTTT--C-AATGCAC--GAAAAATGAGAAAATTAAATTATTGGCCGC-AAT-TTTGGATTCAGGGTTT--GTTG-AAACATT---GTGATAACATTTTTCATAAAGTATTTCAGCCATTAAATCCTCAGATGGC-TCCGTAGTCTGCAGATTTCAGACAGATTGAACTTCATAA-ATTTTCTTTACA-CG--AGTCTC----AAATCGCCACAAATAACA----AACATCGTAAGTATTATC-ATATACATT
gi|7 : ATTTTCGGGATAT--TAGACAAACACAG-TTAAAATTGTT-A--CGTC-AAACGCAA-ATCGTCA---------AGAAAAT------CAATATATGT-------------C-TATGCACTTG-AAATTTATAACATCC---TATTGTATGATAGA-TTT--GTT-----TTT---TT---ATCTGCGAAGTGGTATCATTT-TTTTAAAGGAATT------TTG------TCGATGGC-TGCATACTTTGCTCATTTCAGTCGGATTAA
gi|8 : ccgttgttttccgtcacccaagagcttaatacccttttagagtcatctatatagtgttgGTGCACGCAATGGG-TCAAACAG--CAGCTGAAACCTTCAACCTTTGTGT-CCCAGGCCCCCCCCCCCCCCCCCCCC-CCCTA-TTTGCTATCCAACGAGCAGTTGCAACAGATTTCACAAGTTGTCGCTGAATATC-ATATCAAAGCAGGGACTACCTAAACG-TGCCCA-TTGGGC-CCTTACTACCAAGTGTTGGCCATGG-------TG-AA--ATCCCTAATACAGGGTACAG
gi|9 : CTACTCAGTGTTAAAGTCGGTT-ATAAAAGTGTCATTAAGCCGTTTTTTCTTTGTGT-GCAATCTCCGTCACTCTA--TGGGCCCTGCCCCGGCAA-ATAGTTTCATCAACTGCATACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-ATACGTAGATGTGTCAGTCGTCTGCACAAAATT
Alignments
lowQualScore : 1 111 111 11 111 11111 1 33333 1 1 1 11 111 1 1 111 1 2222 1 33 11 44444444444444444 111 1111 11 11 1 1 1 2222 11 1 1
lowQualScore : 1 5 5 333 0 66 4 44 1 3 1 1 3 44 3 2 1 3 666 5 99 7 6 00 1 2 99 88 3 111 1 1 6 5 3 1 0 0 8 22222 11 777777 0 3 55555 3 0 0 0 77 777 3 2 0 2 0 111 6 0 1111 0 8 5 3 8 6 8 6 11 44 55 5 6 99 6 1 3 6 66666666666666666 3 6 6 6 1 1 6 6 6 111 8 8 8 8 3 8 0 8 0 9999 8 88 88 0 22 9 0 33 3 0 2 3 5 1 3333 1 88 5 5
lowQualScore : . . . ... . .. . .. . . . . . .. . . . . ... . .. . . .. . . .. .. . ... . . . . . . . . . ..... .. ...... . . ..... . . . . .. ... . . . . . ... . . .... . . . . . . . . .. .. .. . . .. . . . . ................. . . . . . . . . . ... . . . . . . . . . .... . .. .. . .. . . .. . . . . . . .... . .. . .
lowQualScore : 4 7 4 444 1 11 4 22 8 1 0 1 1 22 1 4 4 0 666 7 22 3 7 22 7 5 22 33 5 777 0 7 7 7 5 0 7 8 0 44444 88 888888 0 2 00000 2 0 0 0 00 555 2 5 0 0 0 000 5 0 2222 0 8 0 2 0 0 0 7 00 00 77 2 7 22 7 0 5 7 77777777777777777 2 7 7 7 0 0 7 7 7 777 0 0 8 0 8 8 8 0 8 2222 0 88 88 8 55 2 8 88 2 0 5 3 5 0 5555 0 55 5 0
consensus : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTTG--C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTNAAAAAAACCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAA-TTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTATTGGTCCGAAAATTCAAATGGGGC
Reference ( family-5931 ) : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTTG--C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTNAAAAAAACCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAA-TTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTATTGGTCCGAAAATTCAAATGGGGC
gi|1 : AACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGGTGAATGTTTTGA-C-TCTGCAC--GAAAACTGAAAACATTAAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTTTGGTTA-TA-CTTC---GTGATTACATT-CTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGCCTACATA-TCTGCAGATTTACGACAGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTAAAAAAAGCCCCCA-AAAT----------CATCGTAATTATTATC-ATATACACTGAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAAATTGCAT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACATAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-TGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCGCACG--A-GGG-TCAGACAA--CAGCTGAA-ACCCCAAACAGTGTGC-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATCAATGACCAGGCA-GAATCAGC---ACG-TCCCCACTCGTGC-CTCTTCTACCAAAC-TTGCCGATAGAG-CCTTTG-GACGA--CATAATACA-GGTACAGAACCTGCCTCGTAATTATC--CTTATCAAACTAGTTTATGACTATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAAATGGTG--TATACATCAA--TTAGGGTTATTGGT-CGAAAATTCAAATGGGGC
gi|10 : tGTGTCGTCGAGCCGTTTT-CCATTGTTGTGCCATCTGCGTCTTCCTA--AGGGATCTTCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-AAGCGAAGTTTCGTCGGTCGCTTGCACAAATTTCAAGGTAAGACATGTTGAATGTTTTG--C-t
gi|11 : TACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTGTTTCCATTGT--------------CTTCCTA--AGAGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|12 : AAAGTGTCATTGAGCCGTTTT-CCATTGTT--GCCATCTCCGTCTTCCTA--AGGGCTCTACCCGGGCAA-TCAGTTTTTCCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|13 : ACTCAGTGTTAAAGCCGGTT-ATAAAAGTGC--TTAA------------TTGT---GCCATCGCTGTCATCCTA--AGGGCCCTGCCCCGGCAA-TTAGTTTCACCAACGGCAAACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-AAACGCAGATTCGTCAGTCGTCTGCA
gi|14 : CCAGATGCATCT-ACGCC--TGCGCACGCAAGGGG-TCAAACAC--CAGCTGAA-CCCCCAGAC--TGTGG-CTCAG-----------------CC-C-CCATA-TT-G---TCTAACGAACAATTACAACAGGTGTCAGAAGCCGTTGCAGAG-ATC-ATGGCCAGGCA-GAATCAGC---A
gi|15 : AATGCCGAAAAGAAAGAACTCTCAACCAACACTGG-CGGCAAGGCCTAGGAGGGGACCCAA-GGGCCCGGGCAAACCAGATGCATCT-ACGCC--TGCGCACG--
gi|16 : caagcacttggaagttgtgattaacaatcattacTTGCGGATATATTAGCTCAACACTG-CCAAA--TGTGAA--CGTC-ATACGc
gi|17 : agttattcctagagtgtatagcaACTTTGGGGATAT--TAGCCAAACACGG-CC-AAACCGTG-A--CGTC-ATACatgtctagtttttgccaatattc
gi|2 : AACTACTCAGAGTTAAAGCCAACA-ATAAAAGTGTCATTGAGCCGTTTT-CCATTGTTTTGCCATTTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TTAGTTTTACCAACGGCATACTTTGTGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATGTTTTG--CCTCTTCAC--GAAAACTGAAAACATTCAATTATTAGCCGA-AGTGTTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAATATTTCAATCATTAAACCCTTCGATGGC-TACACAATCTGCAGATTTCTGACGGATTCAACTTCACAAGTTTTTCTGTACACCACCAAAAAAAAAAAAACCCAAA-AAACAAC-----AACATCGTAATTATTACC-ATATACACTTAATTATTACTT-GCGTCTGAGATTCTTCG-ACATACATGT-GCATATT---CATTTTTGTTTTTTGAA-TTGCAT-TTC-A-TATCGAGCACTGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGGAATGTCAAGGAGGCCACCCAT-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCACACG--AGGTG-TCCGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-ACTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC--------------TCGTGC-C-CTACTACCAAGC-TTGCCGATAGAGTCT-TTA-GACGAT-CATAATACA-GATACAGAACCTG------AGTTAATAGCTTATCAAACTAG-TTATGACCATGATTTGCGGACTCATGGTGCCTAACAAA-TGAAATCCAAAATTGTAACTGG-GACTTTACATCAATTTTAGGGCTA-TGGTCCGAAAATTCAAATGGGGCtttggctcaccagtagtgttcagcag
gi|3 : CTCAGAGTTAA-GCCGGTT-ATAAA-GTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCC-GGCAA-TCAGGTTTAC-AACAGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGTTCGCACAAAATTCAAGGTAAGACATG-TGAATTTTTTAACC-TCTGCAC--G-AAACTGAAACAATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACAGATTGAACTTCACAT-TTTTTCTGTACACGA--AAGCTTAAAAAA------A-AAACAACCCAAAAACATCGT-ATTATTATCAATATACACTTAATTATTACTT-ACGTCTGCGATTCTTCGAACATACATGTAACATATTTAATGTTTTTTTTTTTT----TTCTGC-TTCAA-TATCGAGCAACGGAGCAC----TAAATCTTGCCGTTAACCTAATGCCGAAACGAAAGAATGCGCAACTAACACTGGTTGGCAAGGTC-AGGATGCTGCCCAATAGGCTTGGACATG-CAGATGCATCTCACAATATGGCGCACG--AGAGGCTCAGACAA--CAGCTGAA-CCCCCAAACAG-GTGTGCCCAG-----------------CCACTCCATA--T-GCTGTCTAACGAACAATTGCAACAGGTTTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGAGCTCTCT-CTACC-AGC-TTGCCGATAGAG--C-TTGTGACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGA-CATGATTTG-GGACTCAT
gi|4 : atatattATTATTACTTAGCGTCTGCGATCTTTCG-ACATACATGT--CATATT---CATTTTTGTTTT--GAA-TTGCATGTTC-AATATCGAGCAC-GGAG-ACACCCTAAATCTTGCCA-TAAC-TAATGC-GAAACGAAAGAAATC-CAAC-AACACTGG-TGGCAAGGTCAAGGAG-CCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-AAATCATGGCGCACG--AAGG--TCAGACAAAACAGCTGAA-CCC---AACAGTGTGC-CCCAG-----------------CCAC-CCATAATT-GCTGTCTA-CGAACAATTGCAACAGGTTTCACAAGC-GTTGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACGTTCCCCA-TCG-GC-CTCTTCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATAC--GGTAC-GAACCTG-CTCG----TATC--GT-----AACTAG-TTATGACCA
gi|5 : CTACTCAGAGTTAAAGCCGGTTTATAAAAGTGTCATTGAGCCGTTTT-CCATT-TTTTGCCAT-TCCGTCTTCCTATAAGGGCT--GCCCCGGCAAATCG--TTTACCAACGGCATACTTTGGG-AT-T--TAGCCAAACACAG-CAAAAACTGTG-A--CGTCCATGCGCAGTTTCGTCAGTCGTCTGCA-AAAATTCA-GGTAAGACATGTTGAATTTTTTC--C-TCTGCAC--GAAAACTG-AAAC-TTCAATTATTGGCCGA-AG--TTTAGGTTGAGGATTT--GTTATAAACTTC---GTGATAACA-TTCTTTTAAAGTATTTCAACCATT-AACCCTTCGATGGC-TACATAATCTGC-GATTTCCGACAGATTGAACTTCAC-A-TTTTTCTGTACA-CG--AGGCTCAAAAAAA
gi|6 : CAACGTCATACTT-GTGAATAT--TAGCCAAACATGGTCAAAGACCGTA-AACCGTG-ACG-------TCACCAGTAGTCTGCACAAAATTCAAGATAAGACATTTTGAATTTTTTT--C-AATGCAC--GAAAAATGAGAAAATTAAATTATTGGCCGC-AAT-TTTGGATTCAGGGTTT--GTTG-AAACATT---GTGATAACATTTTTCATAAAGTATTTCAGCCATTAAATCCTCAGATGGC-TCCGTAGTCTGCAGATTTCAGACAGATTGAACTTCATAA-ATTTTCTTTACA-CG--AGTCTC----AAATCGCCACAAATAACA----AACATCGTAAGTATTATC-ATATACATT
gi|7 : ATTTTCGGGATAT--TAGACAAACACAG-TTAAAATTGTT-A--CGTC-AAACGCAA-ATCGTCA---------AGAAAAT------CAATATATGT-------------C-TATGCACTTG-AAATTTATAACATCC---TATTGTATGATAGA-TTT--GTT-----TTT---TT---ATCTGCGAAGTGGTATCATTT-TTTTAAAGGAATT------TTG------TCGATGGC-TGCATACTTTGCTCATTTCAGTCGGATTAA
gi|8 : ccgttgttttccgtcacccaagagcttaatacccttttagagtcatctatatagtgttgGTGCACGCAATGGG-TCAAACAG--CAGCTGAAACCTTCAACCTTTGTGT-CCCAGGCCCCCCCCCCCCCCCCCCCC-CCCTA-TTTGCTATCCAACGAGCAGTTGCAACAGATTTCACAAGTTGTCGCTGAATATC-ATATCAAAGCAGGGACTACCTAAACG-TGCCCA-TTGGGC-CCTTACTACCAAGTGTTGGCCATGG-------TG-AA--ATCCCTAATACAGGGTACAG
gi|9 : CTACTCAGTGTTAAAGTCGGTT-ATAAAAGTGTCATTAAGCCGTTTTTTCTTTGTGT-GCAATCTCCGTCACTCTA--TGGGCCCTGCCCCGGCAA-ATAGTTTCATCAACTGCATACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-ATACGTAGATGTGTCAGTCGTCTGCACAAAATT
blockSeqs : G T T TGT TA A AT A T C T A AC C T T G AAC C TT A T TG A G . AT A GAA C A . A A T G CCACC AA ACCCAA C A CCAAA A A A A AA TAA T G . A G AA T C ACCC T C T C T T T C GC AG CA G C AA A C A G GCCCCCCCCCCCCCCCC A T A T G C T . G TAA T . T T T A G TCT T TC AG C T AG T . C C . C GAC T TT . C
blockSeqs : A . T TTT . . . A . A T . . . T T G G . . A . T A G . A A . C A . A A C . CGA TA ATCGCC . A A A . . . G . T G . G . AA C . . . C G C . A . . GC AT CA G . . . C A . . A . . . G C . . . . . . A . T T . CC . T A C . . T . C .
blockSeqs : A . T TTT . . . A . A T . . . T T T G . . A . T A G . A A . C A . A A C . CG CA . . A . . . . . . . . . . A . A . . . . . G T . A . . AT AT . G . . . C A . . A . . . T C . . . . . . G . C A . C . T A . . . . . .
blockSeqs : A . . TTT . . . G . C C . . . A T T C . . . . A G C . G A . T G . G T A . CG C . . . . . . AA . . A . . . T T . . C . . . T T . . . . . . . . . . . . . T .
blockSeqs : A . . GT . . . T . C T . . . T T T T . . . . . . . . . T . . . . C . A . AT . . T . . . . . . . . . . . T . . . . .
blockSeqs : A . . T . . . G . C C . . . T . . . . .
blockSeqs : . . . . . A . C T . . . T
blockSeqs : . . . . . A . A T . . . A
blockSeqs : . A . A T . . . .
blockSeqs : . G . A C . . . .
blockSeqs : . A . T T . . .
blockSeqs : . G . C C . . .
blockSeqCons : N** ** CG*** C*** T*
originalCons : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTTG--C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACACCG--AGGCTNAAAAAAACCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAA-TTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG-CC-TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTATTGGTCCGAAAATTCAAATGGGGC
finalCons : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTTN--C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACACG---AGGCTNAAAAAAACCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAA-TTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAGC---TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTATTGGTCCGAAAATTCAAATGGGGC
Alignments
lowQualScore : 1 111 1111 11 111 111 2222222222222 33333 1 1 1 11 111 1 1 111 1 2222 1 33 11 44444444444444444 111 22222 11 11 1 1 1 2222 11 1 1
lowQualScore : 1 5 5 333 0 66 4 44 1 3 1 1 3 44 3 2 1 3 6666 5 99 7 6 00 1 2 99 88 3 111 1 1 6 5 3 1 0 0 8 111 3 11 8888888888888 3 55555 3 0 0 0 77 777 3 2 0 2 0 111 6 0 1111 0 8 5 3 8 6 8 6 11 44 55 5 6 99 6 1 3 6 66666666666666666 3 6 6 6 1 1 6 6 6 111 8 8 8 8 3 8 0 8 0 88888 8 88 88 0 22 9 0 33 3 0 2 3 5 1 3333 1 88 5 5
lowQualScore : . . . ... . .. . .. . . . . . .. . . . . .... . .. . . .. . . .. .. . ... . . . . . . . . . ... . .. ............. . ..... . . . . .. ... . . . . . ... . . .... . . . . . . . . .. .. .. . . .. . . . . ................. . . . . . . . . . ... . . . . . . . . . ..... . .. .. . .. . . .. . . . . . . .... . .. . .
lowQualScore : 4 7 4 444 1 11 4 22 8 1 0 1 1 22 1 4 4 0 6666 7 22 3 7 22 7 5 22 33 5 777 0 7 7 7 5 0 7 8 0 000 2 88 8888888888888 2 00000 2 0 0 0 00 555 2 5 0 0 0 000 5 0 2222 0 8 0 2 0 0 0 7 00 00 77 2 7 22 7 0 5 7 77777777777777777 2 7 7 7 0 0 7 7 7 777 0 0 8 0 8 8 8 0 8 22222 0 88 88 8 55 2 8 88 2 0 5 3 5 0 5555 0 55 5 0
consensus : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTT--N-C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACAC-G-AGGCTNAAAAAAA-----CCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAA-TTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG--C--TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTATTGGTCCGAAAATTCAAATGGGGC
Reference ( family-5931 ) : NAACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACGG-CNAAAACCGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATNTTTT--N-C-TCTGCAC--GAAAACTGAAAACATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACGGATTGAACTTCACAA-TTTTTCTGTACAC-G-AGGCTNAAAAAAA-----CCCCCA-AAACAAC-----AACATCGTAATTATTATC-ATATACACTTAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAA-TTGCGT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACGTCA-GGCGCACG--AGGGG-TCAGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTNTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGNGC-CTCTNCTACCAAGC-TTGCCGATAGAG--C--TTG-GACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGACCATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAANTGGTGACTNTACATCAATTTTAGGGCTATTGGTCCGAAAATTCAAATGGGGC
gi|1 : AACTACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGGTGAATGTTTT--GAC-TCTGCAC--GAAAACTGAAAACATTAAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTTTGGTTA-TA-CTTC---GTGATTACATT-CTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGCCTACATA-TCTGCAGATTTACGACAGATTGAACTTCACAA-TTTTTCTGTACACCG-AGGCTAAAAAAAG-----CCCCCA-AAAT----------CATCGTAATTATTATC-ATATACACTGAATTATTACTT-GCGTCTGCGATTCTTCG-ACATACATGT-ACATATT---CGTTTTTGTTTTTTGAAATTGCAT-TTC-A-TATCGAGCACCGGAG-AC----TAAATCTTGCCA-TAACATAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-TGGCAAGGTCAAGGAGGCCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCGCACG--A-GGG-TCAGACAA--CAGCTGAA-ACCCCAAACAGTGTGC-CCCAG-----------------CCAC-CCATA-TT-GCTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATCAATGACCAGGCA-GAATCAGC---ACG-TCCCCACTCGTGC-CTCTTCTACCAAAC-TTGCCGATAGAG--CCTTTG-GACGA--CATAATACA-GGTACAGAACCTGCCTCGTAATTATC--CTTATCAAACTAGTTTATGACTATGATTTG-GGACTCATGGTGCCTAACAAATTGAAATCCAAAATTGTAAATGGTG--TATACATCAA--TTAGGGTTATTGGT-CGAAAATTCAAATGGGGC
gi|10 : tGTGTCGTCGAGCCGTTTT-CCATTGTTGTGCCATCTGCGTCTTCCTA--AGGGATCTTCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-AAGCGAAGTTTCGTCGGTCGCTTGCACAAATTTCAAGGTAAGACATGTTGAATGTTTT--G-C-t
gi|11 : TACTCGGAGTTAAAGCCGGTT-ATAAAAGTGTCATTGAGCCGTGTTTCCATTGT--------------CTTCCTA--AGAGCTCTGCCCCGGCAA-TCAGTTTTACCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTATG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|12 : AAAGTGTCATTGAGCCGTTTT-CCATTGTT--GCCATCTCCGTCTTCCTA--AGGGCTCTACCCGGGCAA-TCAGTTTTTCCAACGGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAA
gi|13 : ACTCAGTGTTAAAGCCGGTT-ATAAAAGTGC--TTAA------------TTGT---GCCATCGCTGTCATCCTA--AGGGCCCTGCCCCGGCAA-TTAGTTTCACCAACGGCAAACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-AAACGCAGATTCGTCAGTCGTCTGCA
gi|14 : CCAGATGCATCT-ACGCC--TGCGCACGCAAGGGG-TCAAACAC--CAGCTGAA-CCCCCAGAC--TGTGG-CTCAG-----------------CC-C-CCATA-TT-G---TCTAACGAACAATTACAACAGGTGTCAGAAGCCGTTGCAGAG-ATC-ATGGCCAGGCA-GAATCAGC---A
gi|15 : AATGCCGAAAAGAAAGAACTCTCAACCAACACTGG-CGGCAAGGCCTAGGAGGGGACCCAA-GGGCCCGGGCAAACCAGATGCATCT-ACGCC--TGCGCACG--
gi|16 : caagcacttggaagttgtgattaacaatcattacTTGCGGATATATTAGCTCAACACTG-CCAAA--TGTGAA--CGTC-ATACGc
gi|17 : agttattcctagagtgtatagcaACTTTGGGGATAT--TAGCCAAACACGG-CC-AAACCGTG-A--CGTC-ATACatgtctagtttttgccaatattc
gi|2 : AACTACTCAGAGTTAAAGCCAACA-ATAAAAGTGTCATTGAGCCGTTTT-CCATTGTTTTGCCATTTCCGTCTTCCTA--AGGGCTCTGCCCCGGCAA-TTAGTTTTACCAACGGCATACTTTGTGGATAT--TAGCCAAACACAG-CCAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGCCTGCACAAAATTCAAGGTAAGACATGTTGAATGTTTT--G-CCTCTTCAC--GAAAACTGAAAACATTCAATTATTAGCCGA-AGTGTTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAATATTTCAATCATTAAACCCTTCGATGGC-TACACAATCTGCAGATTTCTGACGGATTCAACTTCACAAGTTTTTCTGTACAC-C-A--CCAAAAAAAAAAAAACCCAAA-AAACAAC-----AACATCGTAATTATTACC-ATATACACTTAATTATTACTT-GCGTCTGAGATTCTTCG-ACATACATGT-GCATATT---CATTTTTGTTTTTTGAA-TTGCAT-TTC-A-TATCGAGCACTGGAG-AC----TAAATCTTGCCA-TAACCTAATGCCGAAACGAAAGAATTCGCAACCAACACTGG-CGGGAATGTCAAGGAGGCCACCCAT-AGGCTTGGACATGCCAGATGCATCT-ACATCAGGGCACACG--AGGTG-TCCGACAA--CAGCTGAA-CCCCCAAACAGTGTGT-CCCAG-----------------CCAC-CCATA-TT-ACTGTCTAACGAACAATTGCAACAGGTGTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC--------------TCGTGC-C-CTACTACCAAGC-TTGCCGATAGAGTCT--TTA-GACGAT-CATAATACA-GATACAGAACCTG------AGTTAATAGCTTATCAAACTAG-TTATGACCATGATTTGCGGACTCATGGTGCCTAACAAA-TGAAATCCAAAATTGTAACTGG-GACTTTACATCAATTTTAGGGCTA-TGGTCCGAAAATTCAAATGGGGCtttggctcaccagtagtgttcagcag
gi|3 : CTCAGAGTTAA-GCCGGTT-ATAAA-GTGTCATTGAGCCGTTTTTCCATTGTTTTGCCATCTCCGTCTTCCTA--AGGGCTCTGCCC-GGCAA-TCAGGTTTAC-AACAGCATACTTTGGGGATAT--TAGCCAAACACAG-CAAAAACTGTG-A--CGTC-ATGCGCAGTTTCGTCAGTCGTTCGCACAAAATTCAAGGTAAGACATG-TGAATTTTTTAAC-C-TCTGCAC--G-AAACTGAAACAATTCAATTATTGGCCGA-AGT-TTTAGGTTGAGGATTT--GTTA-AAACTTC---GTGATAACATTTCTTTTAAAGTATTTCAACCATTAAACCCTTCGATGGC-TACATAATCTGCAGATTTCCGACAGATTGAACTTCACAT-TTTTTCTGTACAC-GAAAGCTTAAAAAA-----------A-AAACAACCCAAAAACATCGT-ATTATTATCAATATACACTTAATTATTACTT-ACGTCTGCGATTCTTCGAACATACATGTAACATATTTAATGTTTTTTTTTTTT----TTCTGC-TTCAA-TATCGAGCAACGGAGCAC----TAAATCTTGCCGTTAACCTAATGCCGAAACGAAAGAATGCGCAACTAACACTGGTTGGCAAGGTC-AGGATGCTGCCCAATAGGCTTGGACATG-CAGATGCATCTCACAATATGGCGCACG--AGAGGCTCAGACAA--CAGCTGAA-CCCCCAAACAG-GTGTGCCCAG-----------------CCACTCCATA--T-GCTGTCTAACGAACAATTGCAACAGGTTTCACAAGCCGTCGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACG-TCCCCA-TCGAGCTCTCT-CTACC-AGC-TTGCCGATAGAG--C--TTGTGACGAT-CATAATACA-GGTACAGAACCTG-CTCGTAATTATC--CTTATCAAACTAG-TTATGA-CATGATTTG-GGACTCAT
gi|4 : atatattATTATTACTTAGCGTCTGCGATCTTTCG-ACATACATGT--CATATT---CATTTTTGTTTT--GAA-TTGCATGTTC-AATATCGAGCAC-GGAG-ACACCCTAAATCTTGCCA-TAAC-TAATGC-GAAACGAAAGAAATC-CAAC-AACACTGG-TGGCAAGGTCAAGGAG-CCGCCCAA-AGGCTTGGACATGCCAGATGCATCT-AAATCATGGCGCACG--AAGG--TCAGACAAAACAGCTGAA-CCC---AACAGTGTGC-CCCAG-----------------CCAC-CCATAATT-GCTGTCTA-CGAACAATTGCAACAGGTTTCACAAGC-GTTGCAGAA-ATC-ATGGCCAGGCA-GAATCAGC---ACGTTCCCCA-TCG-GC-CTCTTCTACCAAGC-TTGCCGATAGAGC-C--TTG-GACGAT-CATAATAC--GGTAC-GAACCTG-CTCG----TATC--GT-----AACTAG-TTATGACCA
gi|5 : CTACTCAGAGTTAAAGCCGGTTTATAAAAGTGTCATTGAGCCGTTTT-CCATT-TTTTGCCAT-TCCGTCTTCCTATAAGGGCT--GCCCCGGCAAATCG--TTTACCAACGGCATACTTTGGG-AT-T--TAGCCAAACACAG-CAAAAACTGTG-A--CGTCCATGCGCAGTTTCGTCAGTCGTCTGCA-AAAATTCA-GGTAAGACATGTTGAATTTTTT--C-C-TCTGCAC--GAAAACTG-AAAC-TTCAATTATTGGCCGA-AG--TTTAGGTTGAGGATTT--GTTATAAACTTC---GTGATAACA-TTCTTTTAAAGTATTTCAACCATT-AACCCTTCGATGGC-TACATAATCTGC-GATTTCCGACAGATTGAACTTCAC-A-TTTTTCTGTACAC-G-AGGCTCAAAAAAA-----
gi|6 : CAACGTCATACTT-GTGAATAT--TAGCCAAACATGGTCAAAGACCGTA-AACCGTG-ACG-------TCACCAGTAGTCTGCACAAAATTCAAGATAAGACATTTTGAATTTTTT--T-C-AATGCAC--GAAAAATGAGAAAATTAAATTATTGGCCGC-AAT-TTTGGATTCAGGGTTT--GTTG-AAACATT---GTGATAACATTTTTCATAAAGTATTTCAGCCATTAAATCCTCAGATGGC-TCCGTAGTCTGCAGATTTCAGACAGATTGAACTTCATAA-ATTTTCTTTACAC-G-AGTCTC----AAA-----TCGCCACAAATAACA----AACATCGTAAGTATTATC-ATATACATT
gi|7 : ATTTTCGGGATAT--TAGACAAACACAG-TTAAAATTGTT-A--CGTC-AAACGCAA-ATCGTCA---------AGAAAAT------CAATATATGT--------------C-TATGCACTTG-AAATTTATAACATCC---TATTGTATGATAGA-TTT--GTT-----TTT---TT---ATCTGCGAAGTGGTATCATTT-TTTTAAAGGAATT------TTG------TCGATGGC-TGCATACTTTGCTCATTTCAGTCGGATTAA
gi|8 : ccgttgttttccgtcacccaagagcttaatacccttttagagtcatctatatagtgttgGTGCACGCAATGGG-TCAAACAG--CAGCTGAAACCTTCAACCTTTGTGT-CCCAGGCCCCCCCCCCCCCCCCCCCC-CCCTA-TTTGCTATCCAACGAGCAGTTGCAACAGATTTCACAAGTTGTCGCTGAATATC-ATATCAAAGCAGGGACTACCTAAACG-TGCCCA-TTGGGC-CCTTACTACCAAGTGTTGGCCATGG--------TG-AA--ATCCCTAATACAGGGTACAG
gi|9 : CTACTCAGTGTTAAAGTCGGTT-ATAAAAGTGTCATTAAGCCGTTTTTTCTTTGTGT-GCAATCTCCGTCACTCTA--TGGGCCCTGCCCCGGCAA-ATAGTTTCATCAACTGCATACTTTGGGGATAT--TAGCCAAACACGG-CCAAAACCGTG-A--CGTC-ATACGTAGATGTGTCAGTCGTCTGCACAAAATT