lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 333333 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 888888888888888888888888888888888 1 11111 1111 1111 1111 11111 111111 33333 88888888888888888888888888888888888888888888888888888888888888 11 1111 11111111111111111111111111111111111111111111111111111111 11 1 111 1 1 1 777777777777777 111111 1 11 11 22 1 4444444 22222 11 4444
lowQualScore : 0 000000 4 2 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 333333333333333333333333333333333 8 3 66666 2222 7 6666 66 6666 77777 111111 4 33333 55 11111111111111111111111111111111111111111111111111111111111111 66 3 0 3 33 6666 44 7 3 55 8888 88888888888888888888888888888888888888888888888888888888 9 22 5 3 444 5 5 7 111111111111111 555555 3 7 8 7 2 0 11 11 1 33 6 1 666 3333333 2 3 99999 22 2222 6
lowQualScore : . ...... . . . ....................................................................................................... . ................................. . . ..... .... . .... .. .... ..... ...... . ..... .. .............................................................. .. . . . .. .... .. . . .. .... ........................................................ . .. . . ... . . . ............... ...... . . . . . . .. .. . .. . . ... ....... . . ..... .. .... .
lowQualScore : 5 000000 7 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 000000000000000000000000000000000 6 9 99999 7777 3 0000 99 9999 22222 555555 0 99999 00 55555555555555555555555555555555555555555555555555555555555555 22 1 2 1 22 3333 66 3 9 55 5555 44444444444444444444444444444444444444444444444444444444 8 00 0 2 555 0 0 0 000000000000000 888888 0 8 0 0 8 8 00 00 4 00 0 0 555 5555555 0 2 33333 00 5555 0
consensus : GGAGNAAGNCATGGAGCNAAATTTTGATCTGAAAAGCATTGTGCTT---T--------N-GA-------ATAC---T-----AT--------CGGATAAGGAAAT-----A-ATTAACGC---TCAA---AAGAAA-CT----------AAGACGCCCAGCTCGN--GAAATGAA-GTGAAATTATTCA---ATTG-AATCGAAAATAATAATAT---AGAATT--AGGATATTATTGAGN--A--AT---AAATT-AGA-AAA------GAA-AA-CGTCA--AGA------------A-AGA-G--C-----------T----------T----------T-T-G--GAATGTGCCTCTG-GATCCAGCGAAA-TT-CAN---A--TA-CAGCAAGGAA--ATG----T-----------TT---T--GA-----TA--AA---TA-AGTT--------GTTATNATAATGACCGATGGAATT-AAATGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATATN----CCG------CGGGGAAATATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTCT---C---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAGATACGTA
Reference ( gi|1 ) : GGAGGAAGCTTTTAAGCTAAAGTTTGATCTGAAAAGCATTGTGTTT---T--------G-GA-------ATA----------A---------CGGATAAGGAGAT-----A-ATTAACGCAAGTCAA---AAGAAC-CC----------AAAATGCCCAGCTCGT--GCAATGAA-TTAAAATTATTTAATTATTG-AATCCAAAATAATAATAT---AGAATT--ATGATGTTATTGAAG--A--AT---GAATT-GGATAAA------GAA-AA-CTCCA--AGA------------A-AGA-G--T-----------T----------T----------T-T-G--GAATCTGCCTCTG-GATCCAGCAAAA-TT-CAG---A--TA-CAGCAAGAAA--ATG----T-----------TT---T--GA-----TA--AA---TA-AATT--------GTTTTAATAATGACCGATGGAATT-GAATGAAATTTGGGAATCTTTAACTTGGAGGAGTTAAATATA----CGG------AGGGGAAATATTCTTTTACGTATTCCAGTGA-TTTTCCGAAACTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTA-TGTTT-AACAAATGCATCGCCTTTCT---T---TCGTTTTCAGTC-TACTTGCGGACATCT----AATGCGTAG
gi|3 : GGAGTAAGGCATGGAGTTAAATTTTGATCTGAAAAGTATTGTG
gi|5 : tGAGAAAACTATGGAGCAAACTTTTGATCTGACAGTCACTGTTTTTAAAT--------A-CA-------GTA----------AGATGTATGTCGGACAATGAAAT-----G-ATTGGCGCTATT-------ATACC-CCCCCCCCCTAAAAGATGCCCAGCTTGT--GAAATGAA------ATCAT------ACTGCAATC-AAAATTTTAAAATTCCA-ACTT--A-GATATTGTTGAAG--A--ATA--GAGT---AATAAAAAATAAGGA-AA-TTGCGTTATA------------A-AGA-A--G-----------T----------T----------A-T-G--GACTGTGCCTCTA-AATCCAGCGAAA-TT-gaaaaaaaactaagatggccagtccgtgaagtgatattattcatggaatcaagaataatgctatagagagaggatattattgagaattaatttagaaaagaaatcgttaagaaaaagcgttgtgaaaagccttggaatgtggctctggatccagcaaaatttatatgtacagcaaggaagtttatctttcagatatcaatatagttgataaacagttttcataatgtccgatggtagtaaatgaaatttgtgaatctgaagtcggagcagataaatatactaccgggtatttagggaaactattcgtcggtatgtttcaatgatattccactatttgtgtcaattaagggaaattgaaattaaatgtatttctttttaaacaaa
gi|4 : cttcatgattgatattcaagatacaAGCCAAAAATTGATCTGTAAAGCATTGT-TAT---C--------G-AATACCGGTATA----------T---------CGGATATGGAAATTTTTCATATTAATGC---TCAACTAAAGAAT-CC----------AAGGCGCCCAGCTCAT--GAAATGAA-GTGAACTTATTCAA-----GAAATCGAAAGTAATCATTT---GGAATGGAGTGA--TTATTGACA--A--AT---AAATC-TAATATA------GAA-AA-TGTCA--AGATAAAGCGTTAGGA-AGA-A--G-----------T----------T----------T-T-G--GAATGTGCCTCAG-GATCGATCGAAA-TT-CAA---A--TA-CA
gi|15 : ttaataactgatgttcaagatattgagggcgagattgctatggTGATCCGAAAGGCATCGTGTTT---T--------C-GA-------ATACTGGT-----ACAT------CGGATAGGGAAAT-----ag
gi|8 : tattagttaatattcaggaagtggagacatttctggagttgatttgAAAGCATTGTGCTT---T--------T-GA-------ATACCGGTAC---AT--------CGGATAAGGAAAT-----A-TTTAA-------------AAGATA-CT----------AAGATGCTCAGCTCGA--AGAATGAA-GTGAAATTA----GTCATTA-AATCGAAAATAATAATAT---AAAATT--AGGATATTATTGAGT--A--AT---AAATT-AGAAAAA------GAA-A----TCA--AGA------------A-AAG-G--CG----------T----------T----------G-T-GAAGAA---GCTTTGA-AATTCAGCAAAA-TT-TAT---A--TA-CAGCAAGGAA--ATG----T-----------
gi|9 : aaaacttatttttAAAGCATTGTGCTT---TTGTATACCG-GT-------ACA----------T---------CGGATAAGAATAT------------------TTAA---AAGGATACT----------AAGATGCTCAGCTCGAAAG-AATGAA-GTGAAATTA----GTCATTA-AATCGAAAATAATAA-AT---A-AATT--AGGATATTATTGAGT--A--AT---AAATT-AGAAAAA------GAA-A----TCA--AGA------------A-A-A-G--C-----------G----------T----------TGT-GAAGAA---GCTTTGA-AATTCAGCAAAA-TT-TAT---A--TA-CAGCAAGAAA--ATG----
gi|7 : aaaacttatttttAAAGCATGCTGCTT---T--------ATGA-------ATATACCCGGTACAT--------CGGATAAGAATAT------------------TTAA---AAGATA-CT----------AAGATGGCCAGCTCGA--AGAATGAAGTGAAAATTAGTCA-----TA-AATCGAAAATAATAATAT---A-AATT--AGGATATTAT--GAGTCA--AT---AAATT-AGA-AAA------GAA-A----TCA--AGA------------A-A-A-G--CG----------T----------T----------G-T-GAAGAA---GCCTTTGAAATTCAGCAAAA-TTATAT---A--TACCAGCAAGAAA--ATG----T-----------T
gi|2 : ATGCAAGTCAA---AAGAAA-CA----------AACACGTCCAGCTTGT--G-----------AAATTATTCA--TA--G-AATAAAAAATAATAGCTT---AGAGTT--ATGATATCATTGAGT--A--GT---AAATT-AGA---A------GAACAATCACCA--AGA------------A-AAA-GCGT-----------TGAGAAGATGCT----------T-T-G--GAATGTGCCTCTG-AATCAAGCGAAA-----AGAATA--TA-CACCAAGGAG--ACGGCCCT-----------TT---C--AAATTTGTAAGAA---AA-AGTT--------ATT---ATATTGACCGATGGAATT-AAATGAAATTTGTGAATCTACAAGTCGGAGCAGATAAATATG----CCA------TGGAGTAATATTCGTTTGTATGTTTCAGTGATTTTTCCGGTATTTTTGTCGATTAACGGAATCTAAAATTTTAACAATTTGTTTCTTTTTT-AACACATGCATAATCTTCCT---C---TTGTTTTCAGTC-gtctttcaaattt
gi|3 : ctggtacatcacataagcaaacacAA---AAAAAA-CT----------AAGATGGCCAGTCCGT--GAAGTGA---TA---TTATTCA----TGG-AATCAAGAATAATGCTAT---AGAGAG--AGGATATTATTGA-G--A--AT---TAATTTAGA-AAA------GAA-AT-CGTTA--AGA------------A-AAA-G--CG----------T----------TGTGAAAAGCCT-T-G--GAATGTGGCTCTG-GATCCAGCAAAA-TT-TAT---ATGTA-CAGCAAGGAA--GTT----TATC--------TT---TCAGA-----TATCAA---TATAGTTGATAAACAGTTTTCATAATGTCCGATGGTAGT-AAATGAAATTTGTGAATC-TGAAGTCGGAGCAGATAAATATACTACCGGGTATTTAGGGAAACTATTCGTCGGTATGTTTCAATGA-TATTCCACTATTTGTGTCAATTAAGGGAAATTGAAA--TTA--AATGTATTTC-TTTTTAAACAAAaccgctgtcaacgtgta
gi|12 : tggagtaaggcatggagttaaattttgatctgaaaagtattgtggATTGAAA--ATAATTTTGAATT-ACATAAA------GAA-AA-CGTCA--AGA------------A-AGGCG--T-----------TGTAAAGAAA-T----------T-TAG--GAATGTGCCTCTC-GATC-AGCGAAA-TT-CAA---A--TA-TAGCAAGGAA--ATG----T-----------CT---
gi|10 : gaagtgaaattatttgtggaAA------GAA-AA-CATCA--AGA------------AGAGA----------------------------------------T-G--C--TCTGTCTCTG-GATTCAGCGAGGTTT-TAA---A--TA-CGGCAGGGAA--TTG----T-----------TTGTCT--TC-----CA--AGTTTTG-A--T--------GTGATAAGAATGATCAATGGAATTAAAATGAAATTTGTGAATCATAAAGCTGGAG
gi|14 : agAA------GAA-AT-CGTCA--TGA------------A-AAA-G--TGTTGTGAAAAGC----------T----------T-T-G--GAATGTGCTTCTG-GATCCAGTGAAA-TC-TA----A--TAGTAGCAAGGAA--ATG----T-----------ccga
gi|16 : aaaat--AGA------------A-A------------------T----------T----------T-T-A--AAATGTGCCTCTG-GATCCAGCAAAA-TT-CAA---A--gtccttcaaatattgataaaaagt
gi|6 : aaaagtgctgcgt------------A-AGA-A--T-----------T----------G----------T-T-T--GAATGTGCCTCTG-GATCCAGCGAAA-TT-CAA---G--TA-CAGCATGGAA--ATG----TGTTTTTCGGGTTT---T--GA-----TG--AA----A-GATT--------GTTATGATA-TGACCGATGGAATT-GAAAGAAATTTGTTA--TTTTAAGTTGGAGCAGATAAATATT----CTG------CATGGAAATATTCGTTAAGGTATTACAGTGG-ATTTCCGATATTTATGTTGATGAAGTGATTTTG----------AATTTATTCC-TGTTT-GACAAAGGCATCCTCTTTCTGAAT---CCTCTTTCAGTC-TAC
gi|17 : tgTCTG-AATCCAGTGAAA-TT-CAA---A--TA-CAGCATGCAATGATT----T-----------TT---T--ccgtag
gi|11 : atgtcaaAATATTGGTATAGGTGTTTCAGTGA-TTTTCCTATACTGGTGTTAATTAAGGGGATTTAAAA--TTA--AATTTCTTTC-TGTTT-GACATATGCATTGTATTTCT---CAAGTTGTTTTTAG------CTGTAGACATTTTTAAAATACGTAtg
gi|13 : TTTGTGTGTTTCCGTGA-TTTTTTGATATTTGTGTCAATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTTGAAAAAATGCATCGTCATTCTC--T---TTGTTTTTAGTCATAC-TGTAGACATCT----GA
Alignments
lowQualScore : 99999999999999999 11111111 5555555555555 222222222222 1111 333333333 11111 111111 111111111111 555555555555555555555555 8888888888888888888888888888888888888888888888 111 22222222 1 222222222 1111 33333
lowQualScore : 1 33 1 22 44 66 77777777777777777 5 99999999 6666666666666 4 555555555555 2 8888 4 333333333 1 0 33 11111 4 4 77 9999 4 4 55 333333 777777777777 3 2 3 555555555555555555555555 33 2 555 4 44 6 55 7777 5555555555555555555555555555555555555555555555 1 1 6 8 0 6 1 777 1 0 99999999 8 1 6 99 99 6 3 333333333 0 4444 00000
lowQualScore : . .. . .. .. .. ................. . ........ ............. . ............ . .... . ......... . . .. ..... . . .. .... . . .. ...... ............ . . . ........................ .. . ... . .. . .. .... .............................................. . . . . . . . ... . . ........ . . . .. .. . . ......... . .... .....
lowQualScore : 0 00 0 00 22 77 66666666666666666 6 22222222 8888888888888 0 666666666666 0 6666 4 777777777 9 8 22 88888 4 4 00 4444 4 0 00 777777 111111111111 1 6 1 555555555555555555555555 22 9 222 0 22 7 00 7777 3333333333333333333333333333333333333333333333 4 0 0 0 8 0 0 555 0 2 22222222 0 5 7 22 22 7 3 222222222 8 4444 55555
consensus : GGAGNAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTTC-GAATAC-----------CGGTACATCGGATAAGGAAAT-----A-NTTAA-GC---TCAA---AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTGAAA-TTATTCAATT---G-AATCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT-T--GA-----TA--A-ATA-AATT---A----GTTATNATAATGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
Reference ( family-5887 ) : GGAGNAAGNCATGGAGCNAAATTTTGATCTGAAAAGCATTGTGCTTTN-GAATAC-----------T-----ATCGGATAAGGAAAT-----A-ATTAACGC---TCAA---AAGAAACT------------AAGACGCCCAGCTCGNGA-AATGAAGTGAAA-TTATTCAATT---G-AATCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT-T--GA-----TA--A-ATA-AGTT--------GTTATNATAATGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TNCCGCG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAGATACGTA
gi|1 : GGAGGAAGCTTTTAAGCTAAAGTTTGATCTGAAAAGCATTGTGTTTTG-GAATA------------------A-CGGATAAGGAGAT-----A-ATTAACGCAAGTCAA---AAGAACCC------------AAAATGCCCAGCTCGTGC-AATGAATTAAAA-TTATTTAATTATTG-AATCCAAAATAATAATAT---AGAATTATGA-T-GTTATTGAA-GAATG----AAT-TGGATAA--AGAAAA---CTCCAAGA------------A-AGA-GT------------TT----------TTGGAATCTGCCTCTG-GATCCAGCAAAATT-C-AGA--TA-CAGCAAGAAA--ATG----T-----------TT-T--GA-----TA--A-ATA-AATT--------GTTTTAATAATGACCGATGGAATTGAA-TGAAATTTGGGAATCTTTAACTTGGAGGAGTTAAATA---TACGGAG------GGGAAA-TATTCTTTTACGTATTCCAGTGA-TTTTCCGAAACTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTA-TGTTT-AACAAATGCATCGCCTTTC----TT---TCGTTTTCAGTC-TACTTGCGGACATCT----AATGCGTA
gi|10 : A-GA--AGAAAA---CATCAAGA------------AGAGATGC------------TC----------T--------GTCTCTG-GATTCAGCGAGGTT-TTAAA--TA-CGGCAGGGAA--TTG----T-----------TTGT--CT-----TC-----CA-AGTTTTGAT---GTGATAAGAATGATCAATGGAATTAAAATGAAATTTGTGAATCATAAAGCTGGAGCCGAg
gi|11 : AA-TATTGGTATAGGTGTTTCAGTGA-TTTTCCTATACTGGTGTTAATTAAGGGGATTTAAAA--TTA--AATTTCTTTC-TGTTT-GACATATGCATTGTATTTC----TCAAGTTGTTTTTAG------CTGTAGACATTTTTAAAATACGTA
gi|12 : GAAGTGAAA-TTATTT-GTG---G-AATTGAAAATAAT--T-T---TGAATT---A-C-AT--------------------------AA--AGAAAA---CGTCAAGA------------A-AG--GCGTTGTAAAGAAATT----------TAGGAATGTGCCTCTC-GAT-CAGCGAAATT-C-AAA--TA-TAGCAAGGAA--ATG----T-----------CT-
gi|13 : TTTGTTTGTGTGTTTCCGTGA-TTTTTTGATATTTGTGTCAATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTTGAAAAAATGCATCGTCATTC----TCT--TTGTTTTTAGTCATA-CTGTAGACATCT
gi|14 : A--AGAAAT---CGTCATGA------------A-AAA-GTGTTGTGAAAAG-CT----------TTGGAATGTGCTTCTG-GATCCAGTGAAATC-T-A-A--TAGTAGCAAGGAA--ATG----T-----------ga
gi|15 : aaaatTGGAGTTGATTTGTGATCCGAAAGGCATCGTGTTTTC-GAATAC-----------TGGTACATCGGATAGGGAAAT-----gtccttcaaatattgataaaaagt
gi|16 : tattagttaatattcaggaagtggagacatttc-AGA-AA------------TT----------TTAAAATGTGCCTCTG-GATCCAGCAAAATT-C-AAA--
gi|17 : aaaagtgctgcgtTCTG-AATCCAGTGAAATT-C-AAA--TA-CAGCATGCAATGATT----T-----------TT-T--
gi|2 : atgtcaaTAC-----------------ATCACATAAGCAAAC-----ACATGCAAG----TCAA---AAGAAACA------------AACACGTCCAGCTT-----------GTGAAA-TTATTC-ATA---G-AATAAAAAATAATAGCTT---AGAGTTATGA-T-ATCATTGAG-TAGTA----AAT-TAGA-AG--AACAAT---CACCAAGA------------A-AAA-GCGTTGAGAAGATGCT----------TTGGAATGTGCCTCTG-AATCAAGCGAAAAG-A-ATA--TA-CACCAAGGAG--ACGGCCCT-----------TT-C--AAATTTGTA--AGAAA-AA----------GTTATTATATTGACCGATGGAATTAAA-TGAAATTTGTGAATCTACAAGTCGGAGCAGATAAATA---TGCCATG------GAGTAA-TATTCGTTTGTATGTTTCAGTGATTTTTCCGGTATTTTTGTCGATTAACGGAATCTAAAATTTTAACAATTTGTTTCTTTTTT-AACACATGCATAATCTTCC----TC---TTGTTTTCAGTC--ACCtg
gi|3 : ctggGGAGTAAGGCATGGAGTTAAATTTTGATCTGAAAAGTATTGTGgctgtcaacgtgta
gi|3 : tAA---AAAAAACT------------AAGATGGCCAGTCCG------TGAAGTGATA-TTATTCA-TG---G-AATCAAGAATAATGCTAT---AGAGAGAGGA-T-ATTATTGAG-AATTA----ATT-TAGA-AA--AGAAAT---CGTTAAGA------------A-AAA-GCG-----------TTGTGAAAAGCCTTGGAATGTGGCTCTG-GATCCAGCAAAATT-T-ATATGTA-CAGCAAGGAA--GTT----TATC--------TT-TCAGA-----TATCA-ATATAGTTGATAAACAGTTTTCATAATGTCCGATGGTAGTAAA-TGAAATTTGTGAATC-TGAAGTCGGAGCAGATAAATATACTACCGGGTATTTAGGGAAACTATTCGTCGGTATGTTTCAATGA-TATTCCACTATTTGTGTCAATTAAGGGAAATTGAAA--TTA--AATGTATTTC-TTTTTAAACAAAgaaaaaaaactaagatggccagtccgtgaagtgatattattcatggaatcaagaataatgctatagagagaggatattattgagaattaatttagaaaagaaatcgttaagaaaaagcgttgtgaaaagccttggaatgtggctctggatccagcaaaatttatatgtacagcaaggaagtttatctttcagatatcaatatagttgataaacagttttcataatgtccgatggtagtaaatgaaatttgtgaatctgaagtcggagcagataaatatactaccgggtatttagggaaactattcgtcggtatgtttcaatgatattccactatttgtgtcaattaagggaaattgaaattaaatgtatttctttttaaacaaa
gi|4 : tggagtaaggcatggagttaaattttgatctgaaaagtattgtggGCTATGGAGCCAAAAATTGATCTGTAAAGCATTGT--TATC-GAATACCGGTA------T-----ATCGGATATGGAAATTTTTCATATTAATGC---TCAACTAAAGAATCC------------AAGGCGCCCAGCTCATGA-AATGAAGTGAAC-TTATTCAA-----GAAATCGAAAGTAATCATTT---GGAAT--GGAGTGATTATTGAC-AAATA----AATCTAAT-AT--AGAAAA---TGTCAAGATAAAGCGTTAGGA-AGA-AG------------TT----------TTGGAATGTGCCTCAG-GATCGATCGAAATT-C-AAA--TA-CA
gi|5 : ttaataactgatgttcaagatattgagggcgagattGAGAAAACTATGGAGCAAACTTTTGATCTGACAGTCACTGT--TTTT-AAATACAGTAAGATGTAT-----GTCGGACAATGAAAT-----G-ATTGGCGC---T------ATTATACCCCCCCCCCCTAAAAGATGCCCAGCTTGTGA-AATGAA-----A-TCAT---ACT---GCAATC-AAAATTTTAAAATTCCA-ACTTAG-A-T-ATTGTTGAA-GAATAGAGTAAT-AAAA-AATAAGGAAATTGCGTTA-TA------------A-AGA-AG------------TT----------ATGGACTGTGCCTCTA-AATCCAGCGAAATT-ag
gi|6 : cttcatgattgatattcaagataca------------A-AGA-AT------------TG----------TTTGAATGTGCCTCTG-GATCCAGCGAAATT-C-AAG--TA-CAGCATGGAA--ATG----TGTTTTTCGGGTTT-T--GA-----TG--A-A-A-GATT--------GTTATGATA-TGACCGATGGAATTGAA-AGAAATTTGTTA--TTTTAAGTTGGAGCAGATAAATA---TTCTGCA------TGGAAA-TATTCGTTAAGGTATTACAGTGG-ATTTCCGATATTTATGTTGATGAAGTGATTTTG----------AATTTATTCC-TGTTT-GACAAAGGCATCCTCTTTCTGAATC---CT-CTTTCAGTC-TACCCGTAG
gi|7 : tgAAAGCATGCTGCTTTATGAATATACCCGGTA---C-----ATCGGATAAG--AAT-----A-TTTAA-------------AAGATACT------------AAGATGGCCAGCTCGAAG-AATGAAGTGAAAATTAGTCA--T---A-AATCGAAAATAATAATAT---A-AATTAGGA-T-ATTA-TGAGTCAATA----AAT-TAGA-AA--AGAAA------TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCCTTTGAAATTCAGCAAAATTAT-ATA--TACCAGCAAGAAA--ATG----T-----------T
gi|8 : AAAGCATTGTGCTTTT-GAATAC-----------CGGTACATCGGATAAGGAAAT-----A-TTTAA-------------AAGATACT------------AAGATGCTCAGCTCGAAG-AATGAAGTGAAA-TTAGTCA-TT---A-AATCGAAAATAATAATAT---AAAATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-AAG-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGGAA--ATG----T-----------gtctttcaaattt
gi|9 : aaaacttatttttAAAGCATTGTGCTTTT-GTATAC-----------CGGTACATCGGATAAG--AAT-----A-TTTAA---------A---AGGATACT------------AAGATGCTCAGCTCGAAAGAATGAAGTGAAA-TTAGTCA-TT---A-AATCGAAAATAATAA-AT---A-AATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGAAA--ATG----
Alignments
lowQualScore : 111111 11111 66666666666666666 2222222222222 1111 2222222 11111 111111 111111111111 555555555555555555555555 77777777777777777777777777777777777777777777777 2222 111 222222 1 222222222 1111 2222
lowQualScore : 1 1 22 44 88 888 0 444444 5 22222 66 11111111111111111 1 6666666666666 8888 4 9999999 4 4 1 0 33 11111 4 4 77 9999 4 4 55 333333 777777777777 3 2 3 555555555555555555555555 33 2 555 4 44 6 55 7777 44444444444444444444444444444444444444444444444 4 1 0000 8 0 6 1 777 1 0 1 888888 8 1 6 99 99 6 3 333333333 0 4444 4444
lowQualScore : . . .. .. .. ... . ...... . ..... .. ................. . ............. .... . ....... . . . . .. ..... . . .. .... . . .. ...... ............ . . . ........................ .. . ... . .. . .. .... ............................................... . . .... . . . . ... . . . ...... . . . .. .. . . ......... . .... ....
lowQualScore : 0 0 00 22 44 888 2 444444 6 55555 77 99999999999999999 0 8888888888888 6666 4 4444444 4 4 9 8 22 88888 4 4 00 4444 4 0 00 777777 111111111111 1 6 1 555555555555555555555555 22 9 222 0 22 7 00 7777 33333333333333333333333333333333333333333333333 4 0 0000 0 8 0 0 555 2 2 0 888888 0 5 7 22 22 7 3 222222222 8 4444 5555
consensus : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----AT-TT--AA-GC---TCAA---AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTG-AAATTATTCAATT---G-AA-TCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT-------AGTTNTNATAA---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
Reference ( family-5887 ) : GGAGNAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----AN-TT--AA-GC---TCAA---AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTG-AAATTATTCAATT---G-AA-TCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT-------AGTTATNATAA---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
gi|1 : GGAGGAAGCTTTTAAGCTAAAGTTTGATCTGAAAAGCATTGTGTTTT-GGAATA----------------A-CGGATAAGGAGAT-----AA-TT--AACGCAAGTCAA---AAGAACCC------------AAAATGCCCAGCTCGTGC-AATGAATTA-AAATTATTTAATTATTG-AA-TCCAAAATAATAATAT---AGAATTATGA-T-GTTATTGAA-GAATG----AAT-TGGATAA--AGAAAA---CTCCAAGA------------A-AGA-GT------------TT----------TTGGAATCTGCCTCTG-GATCCAGCAAAATT-C-AGA--TA-CAGCAAGAAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT--------GTTTTAATAA---TGACCGATGGAATTGAA-TGAAATTTGGGAATCTTTAACTTGGAGGAGTTAAATA---TACGGAG------GGGAAA-TATTCTTTTACGTATTCCAGTGA-TTTTCCGAAACTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTA-TGTTT-AACAAATGCATCGCCTTTC----TT---TCGTTTTCAGTC-TACTTGCGGACATCT----AATGCGTA
gi|10 : A-GA--AGAAAA---CATCAAGA------------AGAGATGC------------TC----------T--------GTCTCTG-GATTCAGCGAGGTT-TTAAA--TA-CGGCAGGGAA--TTG----T-----------TTGTCT--TC-----CA--AGT----TT-------TGATGTGATAAGAATGATCAATGGAATTAAAATGAAATTTGTGAATCATAAAGCTGGAGCCGAg
gi|11 : AA-TATTGGTATAGGTGTTTCAGTGA-TTTTCCTATACTGGTGTTAATTAAGGGGATTTAAAA--TTA--AATTTCTTTC-TGTTT-GACATATGCATTGTATTTC----TCAAGTTGTTTTTAG------CTGTAGACATTTTTAAAATACGTA
gi|12 : GAAGTG-AAATTATTT-GTG---G-AA-TTGAAAATAAT--T-T---TGAATT---A-C-AT--------------------------AA--AGAAAA---CGTCAAGA------------A-AG--GCGTTGTAAAGAAATT----------TAGGAATGTGCCTCTC-GAT-CAGCGAAATT-C-AAA--TA-TAGCAAGGAA--ATG----T-----------CT---
gi|13 : TTTGTTTGTGTGTTTCCGTGA-TTTTTTGATATTTGTGTCAATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTTGAAAAAATGCATCGTCATTC----TCT--TTGTTTTTAGTCATA-CTGTAGACATCT
gi|14 : A--AGAAAT---CGTCATGA------------A-AAA-GTGTTGTGAAAAG-CT----------TTGGAATGTGCTTCTG-GATCCAGTGAAATC-T-A-A--TAGTAGCAAGGAA--ATG----T-----------ga
gi|15 : aaaatGGAGACATTTCTGGAGTTGATTTGTGATCCGAAAGGCATCGTGTTTT-CGAATA---CTG------GTACATCGGATAGGGAAAT-----gtccttcaaatattgataaaaagt
gi|16 : tattagttaatattcaggaagt-AGA-AA------------TT----------TTAAAATGTGCCTCTG-GATCCAGCAAAATT-C-AAA--
gi|17 : aaaagtgctgcgtTCTG-AATCCAGTGAAATT-C-AAA--TA-CAGCATGCAATGATT----T-----------TT---T--
gi|2 : atgtcaa---CTG------GTACATCACATAAGCAAAC-----AC-ATGCAA-G----TCAA---AAGAAACA------------AACACGTCCAGCTT-----------GTG-AAATTATTC-ATA---G-AA-TAAAAAATAATAGCTT---AGAGTTATGA-T-ATCATTGAG-TAGTA----AAT-TAGA-AG--AACAAT---CACCAAGA------------A-AAA-GCGTTGAGAAGATGCT----------TTGGAATGTGCCTCTG-AATCAAGCGAAAAG-A-ATA--TA-CACCAAGGAG--ACGGCCCT-----------TT---C--AAATTTGTA--AGAA-AA---------AGTTATTATAT---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTACAAGTCGGAGCAGATAAATA---TGCCATG------GAGTAA-TATTCGTTTGTATGTTTCAGTGATTTTTCCGGTATTTTTGTCGATTAACGGAATCTAAAATTTTAACAATTTGTTTCTTTTTT-AACACATGCATAATCTTCC----TC---TTGTTTTCAGTC--ACCtg
gi|3 : GGAGTAAGGCATGGAGTTAAATTTTGATCTGAAAAGTATTGTGgctgtcaacgtgta
gi|3 : tAA---AAAAAACT------------AAGATGGCCAGTCCG------TGAAGTG-ATATTATTCA-TG---G-AA-TCAAGAATAATGCTAT---AGAGAGAGGA-T-ATTATTGAG-AATTA----ATT-TAGA-AA--AGAAAT---CGTTAAGA------------A-AAA-GCG-----------TTGTGAAAAGCCTTGGAATGTGGCTCTG-GATCCAGCAAAATT-T-ATATGTA-CAGCAAGGAA--GTT----TATC--------TT---TCAGA-----TATCAATATAGTTGATAAACAGTTTTCATAA---TGTCCGATGGTAGTAAA-TGAAATTTGTGAATC-TGAAGTCGGAGCAGATAAATATACTACCGGGTATTTAGGGAAACTATTCGTCGGTATGTTTCAATGA-TATTCCACTATTTGTGTCAATTAAGGGAAATTGAAA--TTA--AATGTATTTC-TTTTTAAACAAAgaaaaaaaactaagatggccagtccgtgaagtgatattattcatggaatcaagaataatgctatagagagaggatattattgagaattaatttagaaaagaaatcgttaagaaaaagcgttgtgaaaagccttggaatgtggctctggatccagcaaaatttatatgtacagcaaggaagtttatctttcagatatcaatatagttgataaacagttttcataatgtccgatggtagtaaatgaaatttgtgaatctgaagtcggagcagataaatatactaccgggtatttagggaaactattcgtcggtatgtttcaatgatattccactatttgtgtcaattaagggaaattgaaattaaatgtatttctttttaaacaaa
gi|4 : tggagtaaggcatggagttaaattttgatctgaaaagtattgtggGCTATGGAGCCAAAAATTGATCTGTAAAGCATTGT--TAT-CGAATA---CCG------GTATATCGGATATGGAAATTTTTCATATT--AATGC---TCAACTAAAGAATCC------------AAGGCGCCCAGCTCATGA-AATGAAGTG-AACTTATTCAA-----G-AAATCGAAAGTAATCATTT---GGAAT--GGAGTGATTATTGAC-AAATA----AATCTAAT-AT--AGAAAA---TGTCAAGATAAAGCGTTAGGA-AGA-AG------------TT----------TTGGAATGTGCCTCAG-GATCGATCGAAATT-C-AAA--TA-CA
gi|5 : ttaataactgatgttcaagatattgagggcgagattGAGAAAACTATGGAGCAAACTTTTGATCTGACAGTCACTGT--TTT-TAAATA---CAGTAAGATGTATGTCGGACAATGAAAT-----GA-TT--GGCGC---T------ATTATACCCCCCCCCCCTAAAAGATGCCCAGCTTGTGA-AATGAA------ATCAT---ACT---GCAA-TC-AAAATTTTAAAATTCCA-ACTTAG-A-T-ATTGTTGAA-GAATAGAGTAAT-AAAA-AATAAGGAAATTGCGTTA-TA------------A-AGA-AG------------TT----------ATGGACTGTGCCTCTA-AATCCAGCGAAATT-ag
gi|6 : cttcatgattgatattcaagataca------------A-AGA-AT------------TG----------TTTGAATGTGCCTCTG-GATCCAGCGAAATT-C-AAG--TA-CAGCATGGAA--ATG----TGTTTTTCGGGTTT---T--GA-----TG--AA-A-GATT--------GTTATGATA----TGACCGATGGAATTGAA-AGAAATTTGTTA--TTTTAAGTTGGAGCAGATAAATA---TTCTGCA------TGGAAA-TATTCGTTAAGGTATTACAGTGG-ATTTCCGATATTTATGTTGATGAAGTGATTTTG----------AATTTATTCC-TGTTT-GACAAAGGCATCCTCTTTCTGAATC---CT-CTTTCAGTC-TACCCGTAG
gi|7 : tgAAAGCATGCTGCTTTATGAATATACCCG------GTACATCGGATAAG--AAT-----AT-TT--AA-------------AAGATACT------------AAGATGGCCAGCTCGAAG-AATGAAGTGAAAATTAGTCA--T---A-AA-TCGAAAATAATAATAT---A-AATTAGGA-T-ATTA-TGAGTCAATA----AAT-TAGA-AA--AGAAA------TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCCTTTGAAATTCAGCAAAATTAT-ATA--TACCAGCAAGAAA--ATG----T-----------T
gi|8 : AAAGCATTGTGCTTT-TGAATA---CCG------GTACATCGGATAAGGAAAT-----AT-TT--AA-------------AAGATACT------------AAGATGCTCAGCTCGAAG-AATGAAGTG-AAATTAGTCA-TT---A-AA-TCGAAAATAATAATAT---AAAATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-AAG-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGGAA--ATG----T-----------gtctttcaaattt
gi|9 : aaaacttatttttAAAGCATTGTGCTTT-TGTATA---CCG------GTACATCGGATAAG--AAT-----AT-TT--A---------AA---AGGATACT------------AAGATGCTCAGCTCGAAAGAATGAAGTG-AAATTAGTC-ATT---A-AA-TCGAAAATAATAA-AT---A-AATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGAAA--ATG----
Alignments
lowQualScore : 111111 555555555555555555555555555 2222222222222 1111 2222222 11111 111111 111111111111 555555555555555555555555 77777777777777777777777777777777777777777777777 2222 111 222222 1 222222222 1111 2222
lowQualScore : 1 1 22 44 88 888 0 444444 5 777777777777777777777777777 1 6666666666666 8888 4 9999999 4 4 1 3 44444 1 4 4 888 9999 4 8 55 333333 777777777777 3 2 3 555555555555555555555555 33 2 555 4 44 6 55 7777 44444444444444444444444444444444444444444444444 1 1 0000 8 0 6 1 777 1 0 1 888888 8 1 6 99 99 6 3 333333333 0 4444 4444
lowQualScore : . . .. .. .. ... . ...... . ........................... . ............. .... . ....... . . . . ..... . . . ... .... . . .. ...... ............ . . . ........................ .. . ... . .. . .. .... ............................................... . . .... . . . . ... . . . ...... . . . .. .. . . ......... . .... ....
lowQualScore : 0 0 00 22 44 888 2 444444 6 444444444444444444444444444 0 8888888888888 6666 4 4444444 4 4 9 7 33333 8 4 4 999 4444 4 0 00 777777 111111111111 1 6 1 555555555555555555555555 22 9 222 0 22 7 00 7777 33333333333333333333333333333333333333333333333 0 0 0000 0 8 0 0 555 2 2 0 888888 0 5 7 22 22 7 3 222222222 8 4444 5555
consensus : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----A--T-TTAA-GC---TCAA---AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTG-AAATTATTCAATT---G-AA-TCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT-------AGTTNTNATAA---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
Reference ( family-5887 ) : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----A--T-TTAA-GC---TCAA---AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTG-AAATTATTCAATT---G-AA-TCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT-------AGTTNTNATAA---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
gi|1 : GGAGGAAGCTTTTAAGCTAAAGTTTGATCTGAAAAGCATTGTGTTTT-GGAATA----------------A-CGGATAAGGAGAT-----A--A-TTAACGCAAGTCAA---AAGAACCC------------AAAATGCCCAGCTCGTGC-AATGAATTA-AAATTATTTAATTATTG-AA-TCCAAAATAATAATAT---AGAATTATGA-T-GTTATTGAA-GAATG----AAT-TGGATAA--AGAAAA---CTCCAAGA------------A-AGA-GT------------TT----------TTGGAATCTGCCTCTG-GATCCAGCAAAATT-C-AGA--TA-CAGCAAGAAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT--------GTTTTAATAA---TGACCGATGGAATTGAA-TGAAATTTGGGAATCTTTAACTTGGAGGAGTTAAATA---TACGGAG------GGGAAA-TATTCTTTTACGTATTCCAGTGA-TTTTCCGAAACTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTA-TGTTT-AACAAATGCATCGCCTTTC----TT---TCGTTTTCAGTC-TACTTGCGGACATCT----AATGCGTA
gi|10 : A-GA--AGAAAA---CATCAAGA------------AGAGATGC------------TC----------T--------GTCTCTG-GATTCAGCGAGGTT-TTAAA--TA-CGGCAGGGAA--TTG----T-----------TTGTCT--TC-----CA--AGT----TT-------TGATGTGATAAGAATGATCAATGGAATTAAAATGAAATTTGTGAATCATAAAGCTGGAGCCGAg
gi|11 : AA-TATTGGTATAGGTGTTTCAGTGA-TTTTCCTATACTGGTGTTAATTAAGGGGATTTAAAA--TTA--AATTTCTTTC-TGTTT-GACATATGCATTGTATTTC----TCAAGTTGTTTTTAG------CTGTAGACATTTTTAAAATACGTA
gi|12 : GAAGTG-AAATTATTTG-TG---G-AA-TTGAAAATAA-----------------------TT-TTGA------------AT-TACATAA--AGAAAA---CGTCAAGA------------A-AG--GCGTTGTAAAGAAATT----------TAGGAATGTGCCTCTC-GATC-AGCGAAATT-C-AAA--TA-TAGCAAGGAA--ATG----T-----------CT---
gi|13 : TTTGTTTGTGTGTTTCCGTGA-TTTTTTGATATTTGTGTCAATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTTGAAAAAATGCATCGTCATTC----TCT--TTGTTTTTAGTCATA-CTGTAGACATCT
gi|14 : A--AGAAAT---CGTCATGA------------A-AAA-GTGTTGTGAAAAG-CT----------TTGGAATGTGCTTCTG-GATCCAGTGAAATC-T-A-A--TAGTAGCAAGGAA--ATG----T-----------ga
gi|15 : aaaatGGAGACATTTCTGGAGTTGATTTGTGATCCGAAAGGCATCGTGTTTT-CGAATA---CTG------GTACATCGGATAGGGAAAT-----gtccttcaaatattgataaaaagt
gi|16 : tattagttaatattcaggaagt-AGA-AA------------TT----------TTAAAATGTGCCTCTG-GATCCAGCAAAATT-C-AAA--
gi|17 : aaaagtgctgcgtTCTG-AATCCAGTGAAATT-C-AAA--TA-CAGCATGCAATGATT----T-----------TT---T--
gi|2 : atgtcaa---CTG------GTACATCACATAAGCAAAC-----ACAT-GCAA-G----TCAA---AAGAAACA------------AACACGTCCAGCTT-----------GTG-AAATTATTC-ATA---G-AA-TAAAAAATAATAGCTT---AGAGTTATGA-T-ATCATTGAG-TAGTA----AAT-TAGA-AG--AACAAT---CACCAAGA------------A-AAA-GCGTTGAGAAGATGCT----------TTGGAATGTGCCTCTG-AATCAAGCGAAAAG-A-ATA--TA-CACCAAGGAG--ACGGCCCT-----------TT---C--AAATTTGTA--AGAA-AA---------AGTTATTATAT---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTACAAGTCGGAGCAGATAAATA---TGCCATG------GAGTAA-TATTCGTTTGTATGTTTCAGTGATTTTTCCGGTATTTTTGTCGATTAACGGAATCTAAAATTTTAACAATTTGTTTCTTTTTT-AACACATGCATAATCTTCC----TC---TTGTTTTCAGTC--ACCtg
gi|3 : GGAGTAAGGCATGGAGTTAAATTTTGATCTGAAAAGTATTGTGgctgtcaacgtgta
gi|3 : tAA---AAAAAACT------------AAGATGGCCAGTCCG------TGAAGTG-ATATTATTCA-TG---G-AA-TCAAGAATAATGCTAT---AGAGAGAGGA-T-ATTATTGAG-AATTA----ATT-TAGA-AA--AGAAAT---CGTTAAGA------------A-AAA-GCG-----------TTGTGAAAAGCCTTGGAATGTGGCTCTG-GATCCAGCAAAATT-T-ATATGTA-CAGCAAGGAA--GTT----TATC--------TT---TCAGA-----TATCAATATAGTTGATAAACAGTTTTCATAA---TGTCCGATGGTAGTAAA-TGAAATTTGTGAATC-TGAAGTCGGAGCAGATAAATATACTACCGGGTATTTAGGGAAACTATTCGTCGGTATGTTTCAATGA-TATTCCACTATTTGTGTCAATTAAGGGAAATTGAAA--TTA--AATGTATTTC-TTTTTAAACAAAgaaaaaaaactaagatggccagtccgtgaagtgatattattcatggaatcaagaataatgctatagagagaggatattattgagaattaatttagaaaagaaatcgttaagaaaaagcgttgtgaaaagccttggaatgtggctctggatccagcaaaatttatatgtacagcaaggaagtttatctttcagatatcaatatagttgataaacagttttcataatgtccgatggtagtaaatgaaatttgtgaatctgaagtcggagcagataaatatactaccgggtatttagggaaactattcgtcggtatgtttcaatgatattccactatttgtgtcaattaagggaaattgaaattaaatgtatttctttttaaacaaa
gi|4 : tggagtaaggcatggagttaaattttgatctgaaaagtattgtggGAGATTGCTATGGAGCCAAAAATTGATCTGTAAAGCATTGT--TAT-CGAATA---CCG------GTATATCGGATATGGAAATTTTTCA--TATTAATGC---TCAACTAAAGAATCC------------AAGGCGCCCAGCTCATGA-AATGAAGTG-AACTTATTCAA-----G-AAATCGAAAGTAATCATTT---GGAAT--GGAGTGATTATTGAC-AAATA----AATCTAAT-AT--AGAAAA---TGTCAAGATAAAGCGTTAGGA-AGA-AG------------TT----------TTGGAATGTGCCTCAG-GATCGATCGAAATT-C-AAA--TA-CA
gi|5 : ttaataactgatgttcaagatattgagggcGAGAAAACTATGGAGCAAACTTTTGATCTGACAGTCACTGT--TTT-TAAATA---CAGTAAGATGTATGTCGGACAATGAAATG----A--T-TGGC-GC---T------ATTATACCCCCCCCCCCTAAAAGATGCCCAGCTTGTGA-AATGAA------ATCAT---ACT---GCAA-TC-AAAATTTTAAAATTCCA-ACTTAG-A-T-ATTGTTGAA-GAATAGAGTAAT-AAAA-AATAAGGAAATTGCGTTA-TA------------A-AGA-AG------------TT----------ATGGACTGTGCCTCTA-AATCCAGCGAAATT-ag
gi|6 : cttcatgattgatattcaagataca------------A-AGA-AT------------TG----------TTTGAATGTGCCTCTG-GATCCAGCGAAATT-C-AAG--TA-CAGCATGGAA--ATG----TGTTTTTCGGGTTT---T--GA-----TG--AA-A-GATT--------GTTATGATA----TGACCGATGGAATTGAA-AGAAATTTGTTA--TTTTAAGTTGGAGCAGATAAATA---TTCTGCA------TGGAAA-TATTCGTTAAGGTATTACAGTGG-ATTTCCGATATTTATGTTGATGAAGTGATTTTG----------AATTTATTCC-TGTTT-GACAAAGGCATCCTCTTTCTGAATC---CT-CTTTCAGTC-TACCCGTAG
gi|7 : tgAAAGCATGCTGCTTTATGAATATACCCG------GTACATCGGATAAG--AAT-----A--T-TTAA-------------AAGATACT------------AAGATGGCCAGCTCGAAG-AATGAAGTGAAAATTAGTCA--T---A-AA-TCGAAAATAATAATAT---A-AATTAGGA-T-ATTA-TGAGTCAATA----AAT-TAGA-AA--AGAAA------TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCCTTTGAAATTCAGCAAAATTAT-ATA--TACCAGCAAGAAA--ATG----T-----------T
gi|8 : AAAGCATTGTGCTTT-TGAATA---CCG------GTACATCGGATAAGGAAAT-----A--T-TTAA-------------AAGATACT------------AAGATGCTCAGCTCGAAG-AATGAAGTG-AAATTAGTCA-TT---A-AA-TCGAAAATAATAATAT---AAAATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-AAG-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGGAA--ATG----T-----------gtctttcaaattt
gi|9 : aaaacttatttttAAAGCATTGTGCTTT-TGTATA---CCG------GTACATCGGATAAG--AAT-----A--T-TTA---------AA---AGGATACT------------AAGATGCTCAGCTCGAAAGAATGAAGTG-AAATTAGTC-ATT---A-AA-TCGAAAATAATAA-AT---A-AATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGAAA--ATG----
Alignments
lowQualScore : 111111 555555555555555555555555555 2222222222222 1111 2222222 11111 111111 111111111111 555555555555555555555555 77777777777777777777777777777777777777777777777 2222 111 222222 1 222222222 1111 2222
lowQualScore : 1 1 22 44 88 888 0 444444 5 777777777777777777777777777 1 6666666666666 8888 4 9999999 4 4 1 3 44444 1 4 4 888 9999 4 8 55 333333 777777777777 3 2 3 555555555555555555555555 33 2 555 4 44 6 55 7777 44444444444444444444444444444444444444444444444 1 1 0000 8 0 6 1 777 1 0 1 888888 8 1 6 99 99 6 3 333333333 0 4444 4444
lowQualScore : . . .. .. .. ... . ...... . ........................... . ............. .... . ....... . . . . ..... . . . ... .... . . .. ...... ............ . . . ........................ .. . ... . .. . .. .... ............................................... . . .... . . . . ... . . . ...... . . . .. .. . . ......... . .... ....
lowQualScore : 0 0 00 22 44 888 2 444444 6 444444444444444444444444444 0 8888888888888 6666 4 4444444 4 4 9 7 33333 8 4 4 999 4444 4 0 00 777777 111111111111 1 6 1 555555555555555555555555 22 9 222 0 22 7 00 7777 33333333333333333333333333333333333333333333333 0 0 0000 0 8 0 0 555 2 2 0 888888 0 5 7 22 22 7 3 222222222 8 4444 5555
consensus : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----A--T-TTAA-GC---TCAA---AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTG-AAATTATTCAATT---G-AA-TCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT-------AGTTNTNATAA---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
Reference ( family-5887 ) : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----A--T-TTAA-GC---TCAA---AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTG-AAATTATTCAATT---G-AA-TCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT-------AGTTNTNATAA---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
gi|1 : GGAGGAAGCTTTTAAGCTAAAGTTTGATCTGAAAAGCATTGTGTTTT-GGAATA----------------A-CGGATAAGGAGAT-----A--A-TTAACGCAAGTCAA---AAGAACCC------------AAAATGCCCAGCTCGTGC-AATGAATTA-AAATTATTTAATTATTG-AA-TCCAAAATAATAATAT---AGAATTATGA-T-GTTATTGAA-GAATG----AAT-TGGATAA--AGAAAA---CTCCAAGA------------A-AGA-GT------------TT----------TTGGAATCTGCCTCTG-GATCCAGCAAAATT-C-AGA--TA-CAGCAAGAAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT--------GTTTTAATAA---TGACCGATGGAATTGAA-TGAAATTTGGGAATCTTTAACTTGGAGGAGTTAAATA---TACGGAG------GGGAAA-TATTCTTTTACGTATTCCAGTGA-TTTTCCGAAACTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTA-TGTTT-AACAAATGCATCGCCTTTC----TT---TCGTTTTCAGTC-TACTTGCGGACATCT----AATGCGTA
gi|10 : A-GA--AGAAAA---CATCAAGA------------AGAGATGC------------TC----------T--------GTCTCTG-GATTCAGCGAGGTT-TTAAA--TA-CGGCAGGGAA--TTG----T-----------TTGTCT--TC-----CA--AGT----TT-------TGATGTGATAAGAATGATCAATGGAATTAAAATGAAATTTGTGAATCATAAAGCTGGAGCCGAg
gi|11 : AA-TATTGGTATAGGTGTTTCAGTGA-TTTTCCTATACTGGTGTTAATTAAGGGGATTTAAAA--TTA--AATTTCTTTC-TGTTT-GACATATGCATTGTATTTC----TCAAGTTGTTTTTAG------CTGTAGACATTTTTAAAATACGTA
gi|12 : GAAGTG-AAATTATTTG-TG---G-AA-TTGAAAATAA-----------------------TT-TTGA------------AT-TACATAA--AGAAAA---CGTCAAGA------------A-AG--GCGTTGTAAAGAAATT----------TAGGAATGTGCCTCTC-GATC-AGCGAAATT-C-AAA--TA-TAGCAAGGAA--ATG----T-----------CT---
gi|13 : TTTGTTTGTGTGTTTCCGTGA-TTTTTTGATATTTGTGTCAATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTTGAAAAAATGCATCGTCATTC----TCT--TTGTTTTTAGTCATA-CTGTAGACATCT
gi|14 : A--AGAAAT---CGTCATGA------------A-AAA-GTGTTGTGAAAAG-CT----------TTGGAATGTGCTTCTG-GATCCAGTGAAATC-T-A-A--TAGTAGCAAGGAA--ATG----T-----------ga
gi|15 : aaaatGGAGACATTTCTGGAGTTGATTTGTGATCCGAAAGGCATCGTGTTTT-CGAATA---CTG------GTACATCGGATAGGGAAAT-----gtccttcaaatattgataaaaagt
gi|16 : tattagttaatattcaggaagt-AGA-AA------------TT----------TTAAAATGTGCCTCTG-GATCCAGCAAAATT-C-AAA--
gi|17 : aaaagtgctgcgtTCTG-AATCCAGTGAAATT-C-AAA--TA-CAGCATGCAATGATT----T-----------TT---T--
gi|2 : atgtcaa---CTG------GTACATCACATAAGCAAAC-----ACAT-GCAA-G----TCAA---AAGAAACA------------AACACGTCCAGCTT-----------GTG-AAATTATTC-ATA---G-AA-TAAAAAATAATAGCTT---AGAGTTATGA-T-ATCATTGAG-TAGTA----AAT-TAGA-AG--AACAAT---CACCAAGA------------A-AAA-GCGTTGAGAAGATGCT----------TTGGAATGTGCCTCTG-AATCAAGCGAAAAG-A-ATA--TA-CACCAAGGAG--ACGGCCCT-----------TT---C--AAATTTGTA--AGAA-AA---------AGTTATTATAT---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTACAAGTCGGAGCAGATAAATA---TGCCATG------GAGTAA-TATTCGTTTGTATGTTTCAGTGATTTTTCCGGTATTTTTGTCGATTAACGGAATCTAAAATTTTAACAATTTGTTTCTTTTTT-AACACATGCATAATCTTCC----TC---TTGTTTTCAGTC--ACCtg
gi|3 : GGAGTAAGGCATGGAGTTAAATTTTGATCTGAAAAGTATTGTGgctgtcaacgtgta
gi|3 : tAA---AAAAAACT------------AAGATGGCCAGTCCG------TGAAGTG-ATATTATTCA-TG---G-AA-TCAAGAATAATGCTAT---AGAGAGAGGA-T-ATTATTGAG-AATTA----ATT-TAGA-AA--AGAAAT---CGTTAAGA------------A-AAA-GCG-----------TTGTGAAAAGCCTTGGAATGTGGCTCTG-GATCCAGCAAAATT-T-ATATGTA-CAGCAAGGAA--GTT----TATC--------TT---TCAGA-----TATCAATATAGTTGATAAACAGTTTTCATAA---TGTCCGATGGTAGTAAA-TGAAATTTGTGAATC-TGAAGTCGGAGCAGATAAATATACTACCGGGTATTTAGGGAAACTATTCGTCGGTATGTTTCAATGA-TATTCCACTATTTGTGTCAATTAAGGGAAATTGAAA--TTA--AATGTATTTC-TTTTTAAACAAAgaaaaaaaactaagatggccagtccgtgaagtgatattattcatggaatcaagaataatgctatagagagaggatattattgagaattaatttagaaaagaaatcgttaagaaaaagcgttgtgaaaagccttggaatgtggctctggatccagcaaaatttatatgtacagcaaggaagtttatctttcagatatcaatatagttgataaacagttttcataatgtccgatggtagtaaatgaaatttgtgaatctgaagtcggagcagataaatatactaccgggtatttagggaaactattcgtcggtatgtttcaatgatattccactatttgtgtcaattaagggaaattgaaattaaatgtatttctttttaaacaaa
gi|4 : tggagtaaggcatggagttaaattttgatctgaaaagtattgtggGAGATTGCTATGGAGCCAAAAATTGATCTGTAAAGCATTGT--TAT-CGAATA---CCG------GTATATCGGATATGGAAATTTTTCA--TATTAATGC---TCAACTAAAGAATCC------------AAGGCGCCCAGCTCATGA-AATGAAGTG-AACTTATTCAA-----G-AAATCGAAAGTAATCATTT---GGAAT--GGAGTGATTATTGAC-AAATA----AATCTAAT-AT--AGAAAA---TGTCAAGATAAAGCGTTAGGA-AGA-AG------------TT----------TTGGAATGTGCCTCAG-GATCGATCGAAATT-C-AAA--TA-CA
gi|5 : ttaataactgatgttcaagatattgagggcGAGAAAACTATGGAGCAAACTTTTGATCTGACAGTCACTGT--TTT-TAAATA---CAGTAAGATGTATGTCGGACAATGAAATG----A--T-TGGC-GC---T------ATTATACCCCCCCCCCCTAAAAGATGCCCAGCTTGTGA-AATGAA------ATCAT---ACT---GCAA-TC-AAAATTTTAAAATTCCA-ACTTAG-A-T-ATTGTTGAA-GAATAGAGTAAT-AAAA-AATAAGGAAATTGCGTTA-TA------------A-AGA-AG------------TT----------ATGGACTGTGCCTCTA-AATCCAGCGAAATT-ag
gi|6 : cttcatgattgatattcaagataca------------A-AGA-AT------------TG----------TTTGAATGTGCCTCTG-GATCCAGCGAAATT-C-AAG--TA-CAGCATGGAA--ATG----TGTTTTTCGGGTTT---T--GA-----TG--AA-A-GATT--------GTTATGATA----TGACCGATGGAATTGAA-AGAAATTTGTTA--TTTTAAGTTGGAGCAGATAAATA---TTCTGCA------TGGAAA-TATTCGTTAAGGTATTACAGTGG-ATTTCCGATATTTATGTTGATGAAGTGATTTTG----------AATTTATTCC-TGTTT-GACAAAGGCATCCTCTTTCTGAATC---CT-CTTTCAGTC-TACCCGTAG
gi|7 : tgAAAGCATGCTGCTTTATGAATATACCCG------GTACATCGGATAAG--AAT-----A--T-TTAA-------------AAGATACT------------AAGATGGCCAGCTCGAAG-AATGAAGTGAAAATTAGTCA--T---A-AA-TCGAAAATAATAATAT---A-AATTAGGA-T-ATTA-TGAGTCAATA----AAT-TAGA-AA--AGAAA------TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCCTTTGAAATTCAGCAAAATTAT-ATA--TACCAGCAAGAAA--ATG----T-----------T
gi|8 : AAAGCATTGTGCTTT-TGAATA---CCG------GTACATCGGATAAGGAAAT-----A--T-TTAA-------------AAGATACT------------AAGATGCTCAGCTCGAAG-AATGAAGTG-AAATTAGTCA-TT---A-AA-TCGAAAATAATAATAT---AAAATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-AAG-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGGAA--ATG----T-----------gtctttcaaattt
gi|9 : aaaacttatttttAAAGCATTGTGCTTT-TGTATA---CCG------GTACATCGGATAAG--AAT-----A--T-TTA---------AA---AGGATACT------------AAGATGCTCAGCTCGAAAGAATGAAGTG-AAATTAGTC-ATT---A-AA-TCGAAAATAATAA-AT---A-AATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGAAA--ATG----
blockSeqs : C C TT GT AT TAC TAAGAT G TTTTCATATTAATGCTCAACTA A CCCCCCCCCCTAA AAAG A GTG C A G C TCCA T G G GTC GAGT C T TA ATTGCG TAAAGCGTTAGG G G T GTTGTAAAGAAATT AG A TT A TG G TG GCCC ATCTTTCAGATATCAATATAGTTGATAAACA G G AGAA A A A TAC G T TATTTA C G T TT AC T G TGAATC ATA TTAA
blockSeqs : A A AT GC C . . C ACATGCAAGTCAA A A TGA . ATA . . A T AG G . . GT . . . . ACA . . G . GTTGAGAAGATGCT TG . AT A . C . . GTTTTTCGGGTTTTGATGAAAGATT A T T . T C . A G . . T . . . . A TCAAG TAC
blockSeqs : T A AA GC C . . G GATTGGCGCT A T TGA . ATG . . A T AG T . . GA . . . . ACG . . A . GTTGTGAAAAGCT TA . C A . . . . TTCAAATTTGTAAGAAAAA T C A . T G . T C . . T . . . . . TCT AC
blockSeqs : A A CT GC T . . G ATTTAAA T C AAG . ACT . . G A GG T . . CA . . . . TCG . . G . GTTGTGAAAAGCC TG . T A . . . . TTGTCTTCCAAGTTTT A G . . . T . T . . . . . TC .
blockSeqs : . T . . G ATTTAA T T AAG . ATT . . G T AA T . . AG . . . . TCA . . A . TC TG . C T . . . . G . . . . .
blockSeqs : . T . . . ATTTAA T T . . ATT . . G T A T . . GT . . . . TCG . . A . TT TG . C T . . . .
blockSeqs : . . . T T . . AA . . G . A . . . GT . . . . ATG . . G . TT TG . A A . . . .
blockSeqs : . AT . . . . . . . . . . . . . A . . G . TT TT . T A . . . .
blockSeqs : . . A . . G . TG GT . C T . . . .
blockSeqs : . . . . A . GT GT . C T . . . .
blockSeqs : . . . . GT GT . T T . .
blockSeqs : . . . GT . . T . .
blockSeqs : .
blockSeqCons : ATATTAAA******************* ATN**** GTCTTTCAAATTTAGAAAA****************************
originalCons : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----A--T-TTAA-GC---TCAA---AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTG-AAATTATTCAATT---G-AA-TCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----T-----------TT---T--GA-----TA--AATA-AATT-------AGTTNTNATAA---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
finalCons : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAATATATTAAA-------------------AAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTG-AAATTATTCATN----G-AA-TCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAA--ATG----TGTCTTTCAAATTTAGAAAA----------------------------GTTNTNATAA---TGACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
Alignments
lowQualScore : 111111 6666666666666666666666666666666666666666666666666666666666 1111 11111 111111 111111111111 555555555555555555555555 111111 555555555555555555555555 11 111 222222 1 222222222 1111 2222
lowQualScore : 1 1 22 44 88 888 0 444444 3 8888888888888888888888888888888888888888888888888888888888 8888 4 9999 44 1 3 44444 1 4 4 888 9999 4 8 55 333333 777777777777 3 2 3 555555555555555555555555 33 2 555 4 44 6 4 999 77 666666 666666666666666666666666 6 1 1 11 8 0 6 1 777 1 0 1 888888 8 1 6 99 99 6 3 333333333 0 4444 4444
lowQualScore : . . .. .. .. ... . ...... . .......................................................... .... . .... .. . . ..... . . . ... .... . . .. ...... ............ . . . ........................ .. . ... . .. . . ... .. ...... ........................ . . . .. . . . . ... . . . ...... . . . .. .. . . ......... . .... ....
lowQualScore : 0 0 00 22 44 888 2 444444 9 9999999999999999999999999999999999999999999999999999999999 6666 4 4444 77 9 7 33333 8 4 4 999 4444 4 0 00 777777 111111111111 1 6 1 555555555555555555555555 22 9 222 0 22 7 0 111 99 444444 999999999999999999999999 7 0 0 00 0 8 0 0 555 2 2 0 888888 0 5 7 22 22 7 3 222222222 8 4444 5555
consensus : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----A--------TAT-----TA---A---------AAAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTGAAA-TTATTCA----TGGAATCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAAATG-T--GTCTTT--CA------AAT-TT---N--G-----A--AA-A--G-TTNTNATAAT--GACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
Reference ( family-5887 ) : GGAGAAAGCTATGGAGCTAAATTTTGATCTGAAAAGCATTGTGCTTT-CGAATA---CCG------GTACATCGGATAAGGAAAT-----A--------TAT-----TA---A---------AAAGANACC------------AAGATGCCCAGCTCGNGA-AATGAAGTGAAA-TTATTCA----TNGAATCGAAAATAATAATAT---AGAATTAGGA-T-ATTATTGAG-NAATA----AAT-TAGA-AA--AGAAAA---CGTCAAGA------------A-AGA-GC------------TT----------TTGGAATGTGCCTCTG-GATCCAGCGAAATT-C-ANA--TA-CAGCAAGGAAATG-T--GTCTTT--CA------AAT-TT---A--G-----A--AA-A--G-TTNTNATAAT--GACCGATGGAATTAAA-TGAAATTTGTGAATCTTNAAGTCGGAGCAGATAAATA---TACCGNG------GGGAAA-TATTCGTTTGTGTGTTTCAGTGA-TTTTCCGATATTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTT-AACAAATGCATCGTCTTTC----TC---TTGTTTTCAGTC-TACCTGTAGACATCTTTAAAATGCGTA
gi|1 : GGAGGAAGCTTTTAAGCTAAAGTTTGATCTGAAAAGCATTGTGTTTT-GGAATA----------------A-CGGATAAGGAGAT-----A---------AT-----TA---ACGCAAGTCAAAAGAACCC------------AAAATGCCCAGCTCGTGC-AATGAATTAAAA-TTATTTAATTATTGAATCCAAAATAATAATAT---AGAATTATGA-T-GTTATTGAA-GAATG----AAT-TGGATAA--AGAAAA---CTCCAAGA------------A-AGA-GT------------TT----------TTGGAATCTGCCTCTG-GATCCAGCAAAATT-C-AGA--TA-CAGCAAGAAAATG-T-----TTTGATA------AAT------------------AA-ATTG-TTTTAATAAT--GACCGATGGAATTGAA-TGAAATTTGGGAATCTTTAACTTGGAGGAGTTAAATA---TACGGAG------GGGAAA-TATTCTTTTACGTATTCCAGTGA-TTTTCCGAAACTTGTGTCGATTAAGGGAATTTGAAA--TTA--AATTTGTTTA-TGTTT-AACAAATGCATCGCCTTTC----TT---TCGTTTTCAGTC-TACTTGCGGACATCT----AATGCGTA
gi|10 : A-GA--AGAAAA---CATCAAGA------------AGAGATGC------------TC----------T--------GTCTCTG-GATTCAGCGAGGTT-TTAAA--TA-CGGCAGGGAATTG-TTTGTCTTC--CA------AGT-TT---T--G-----A--T-----G-TGATAAGAAT--GATCAATGGAATTAAAATGAAATTTGTGAATCATAAAGCTGGAGCCGAg
gi|11 : AA-TATTGGTATAGGTGTTTCAGTGA-TTTTCCTATACTGGTGTTAATTAAGGGGATTTAAAA--TTA--AATTTCTTTC-TGTTT-GACATATGCATTGTATTTC----TCAAGTTGTTTTTAG------CTGTAGACATTTTTAAAATACGTA
gi|12 : GAAGTGAAA-TTATTTG----TGGAATTGAAAATAA-----------------------TT-TTGA------------AT-TACATAA--AGAAAA---CGTCAAGA------------A-AG--GCGTTGTAAAGAAATT----------TAGGAATGTGCCTCTC-GATC-AGCGAAATT-C-AAA--TA-TAGCAAGGAAATG-T--
gi|13 : TTTGTTTGTGTGTTTCCGTGA-TTTTTTGATATTTGTGTCAATTAAGGGAATTTGAAA--TTA--AATTTGTTTC-TGTTTGAAAAAATGCATCGTCATTC----TCT--TTGTTTTTAGTCATA-CTGTAGACATCTct
gi|14 : A--AGAAAT---CGTCATGA------------A-AAA-GTGTTGTGAAAAG-CT----------TTGGAATGTGCTTCTG-GATCCAGTGAAATC-T-A-A--TAGTAGCAAGGAAATG-T--GTCCTT--CA------AATATT---GATA-----A--AA-A--G-Tga
gi|15 : aaaatGGAGACATTTCTGGAGTTGATTTGTGATCCGAAAGGCATCGTGTTTT-CGAATA---CTG------GTACATCGGATAGGGAAAT-----
gi|16 : tattagttaatattcaggaagt-AGA-AA------------TT----------TTAAAATGTGCCTCTG-GATCCAGCAAAATT-C-AAA--
gi|17 : aaaagtgctgcgtTCTG-AATCCAGTGAAATT-C-AAA--TA-CAGCA
gi|2 : atgtcaa---CTG------GTACATCACATAAGCAAAC-----A--------CATGCAAGTC---A---------AAAGAAACA------------AACACGTCCAGCTT-----------GTGAAA-TTATTCA----TAGAATAAAAAATAATAGCTT---AGAGTTATGA-T-ATCATTGAG-TAGTA----AAT-TAGA-AG--AACAAT---CACCAAGA------------A-AAA-GCGTTGAGAAGATGCT----------TTGGAATGTGCCTCTG-AATCAAGCGAAAAG-A-ATA--TA-CACCAAGGAGACG-G--CCCTTT--CA------AAT-TTGTAA--GA----A--AA-A--G-TTATTATATT--GACCGATGGAATTAAA-TGAAATTTGTGAATCTACAAGTCGGAGCAGATAAATA---TGCCATG------GAGTAA-TATTCGTTTGTATGTTTCAGTGATTTTTCCGGTATTTTTGTCGATTAACGGAATCTAAAATTTTAACAATTTGTTTCTTTTTT-AACACATGCATAATCTTCC----TC---TTGTTTTCAGTC--ACCtgcaatgatttttttg
gi|3 : GGAGTAAGGCATGGAGTTAAATTTTGATCTGAAAAGTATTGTGgctgtcaacgtgta
gi|3 : tGAAAA-----G--------TAT-----TGTGGA---------AAAAAAACT------------AAGATGGCCAGTCCG------TGAAGTGATA-TTATTCA----TGGAATCAAGAATAATGCTAT---AGAGAGAGGA-T-ATTATTGAG-AATTA----ATT-TAGA-AA--AGAAAT---CGTTAAGA------------A-AAA-GCG-----------TTGTGAAAAGCCTTGGAATGTGGCTCTG-GATCCAGCAAAATT-T-ATATGTA-CAGCAAGGAAGTT-T--ATCTTT--CAGATATCAAT-AT---A--GTTGATA--AACA--G-TTTTCATAAT--GTCCGATGGTAGTAAA-TGAAATTTGTGAATC-TGAAGTCGGAGCAGATAAATATACTACCGGGTATTTAGGGAAACTATTCGTCGGTATGTTTCAATGA-TATTCCACTATTTGTGTCAATTAAGGGAAATTGAAA--TTA--AATGTATTTC-TTTTTAAACAAAgaaaaaaaactaagatggccagtccgtgaagtgatattattcatggaatcaagaataatgctatagagagaggatattattgagaattaatttagaaaagaaatcgttaagaaaaagcgttgtgaaaagccttggaatgtggctctggatccagcaaaatttatatgtacagcaaggaagtttatctttcagatatcaatatagttgataaacagttttcataatgtccgatggtagtaaatgaaatttgtgaatctgaagtcggagcagataaatatactaccgggtatttagggaaactattcgtcggtatgtttcaatgatattccactatttgtgtcaattaagggaaattgaaattaaatgtatttctttttaaacaaa
gi|4 : tggagtaaggcatggagttaaattttgatctGAGATTGCTATGGAGCCAAAAATTGATCTGTAAAGCATTGT--TAT-CGAATA---CCG------GTATATCGGATATGGAAATTTTTCA--------TAT-----TA---ATGCTCAACTAAAGAATCC------------AAGGCGCCCAGCTCATGA-AATGAAGTGAAC-TTATTCA----AGAAATCGAAAGTAATCATTT---GGAAT--GGAGTGATTATTGAC-AAATA----AATCTAAT-AT--AGAAAA---TGTCAAGATAAAGCGTTAGGA-AGA-AG------------TT----------TTGGAATGTGCCTCAG-GATCGATCGAAATT-C-AAA--TA-CA
gi|5 : ttaataactgatgttcaagatattgagggcGAGAAAACTATGGAGCAAACTTTTGATCTGACAGTCACTGT--TTT-TAAATA---CAGTAAGATGTATGTCGGACAATGAAAT-----GATTGGCGCTAT-----TA------------------TACCCCCCCCCCCTAAAAGATGCCCAGCTTGTGA-AATGAA-----A-TCATAC-----TGCAATC-AAAATTTTAAAATTCCA-ACTTAG-A-T-ATTGTTGAA-GAATAGAGTAAT-AAAA-AATAAGGAAATTGCGTTA-TA------------A-AGA-AG------------TT----------ATGGACTGTGCCTCTA-AATCCAGCGAAATT-ag
gi|6 : cttcatgattgatattcaagataca------------A-AGA-AT------------TG----------TTTGAATGTGCCTCTG-GATCCAGCGAAATT-C-AAG--TA-CAGCATGGAAATG-T--GTTTTT--CG------GGT-TT---T--G-----ATGAA-A--GATTGTTATGATATGACCGATGGAATTGAA-AGAAATTTGTTA--TTTTAAGTTGGAGCAGATAAATA---TTCTGCA------TGGAAA-TATTCGTTAAGGTATTACAGTGG-ATTTCCGATATTTATGTTGATGAAGTGATTTTG----------AATTTATTCC-TGTTT-GACAAAGGCATCCTCTTTCTGAATC---CT-CTTTCAGTC-TACCCGTAG
gi|7 : tgAAAGCATGCTGCTTTATGAATATACCCG------GTACATCGGATAAG--AAT-----A--------T-T-----TA---A---------AA-GATACT------------AAGATGGCCAGCTCGAAG-AATGAAGTGAAAATTAGTCA----TA-AATCGAAAATAATAATAT---A-AATTAGGA-T-ATTA-TGAGTCAATA----AAT-TAGA-AA--AGAAA------TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCCTTTGAAATTCAGCAAAATTAT-ATA--TACCAGCAAGAAAATGTT--GTCTTT--CA------AAT-TT---
gi|8 : AAAGCATTGTGCTTT-TGAATA---CCG------GTACATCGGATAAGGAAAT-----A--------T-T-----TA---A---------AA-GATACT------------AAGATGCTCAGCTCGAAG-AATGAAGTGAAA-TTAGTCA----TTAAATCGAAAATAATAATAT---AAAATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-AAG-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGGAAATG-T--
gi|9 : aaaacttatttttAAAGCATTGTGCTTT-TGTATA---CCG------GTACATCGGATAAG--AAT-----A--------T-T-----TA---A---------AAGGATACT------------AAGATGCTCAGCTCGAAAGAATGAAGTGAAA-TTAGTCA----TTAAATCGAAAATAATAA-AT---A-AATTAGGA-T-ATTATTGAG-TAATA----AAT-TAGA-AA--AAGAAA-----TCAAGA------------A-A-A-GC------------GT----------TGTGAAGAAGCTTTGA-AATTCAGCAAAATT-T-ATA--TA-CAGCAAGAAAATG-