lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 2 11 11 1 1 1 111 222222 11111 11 2222222 1111 5555555555555 88888888888888 111 111 1111 3333333333 1 1 333 1 1 555555555555 111 111 9999999999999 1 3333333333 1 2222222 111 999999999999999999 111111 111111 1111111111111111111111111111111111111111111111111 111 222 11 11111
lowQualScore : 6 3 99 88 3 0 3 0 0 111 888888 33333 33 6666666 8 88 7777 8 8 7 5555555555555 2 00000000000000 5 777 5 222 8888 2222222222 0 0 000 0 2 0 0 2 111111111111 444 3 777 3333333333333 0 3 3 0000000000 5 8 33 6 5 1111111 222 99 333333333333333333 1 5 000000 666666 5 5 5 77 5 5 5 6 4 33 8 444 1 4 4444444444444444444444444444444444444444444444444 4 4 66 66 555 1 444 777 00 8 999 5 77 00000 4
lowQualScore : . . .. .. . . . . . ... ...... ..... .. ....... . .. .... . . . ............. . .............. . ... . ... .... .......... . . ... . . . . . ............ ... . ... ............. . . . .......... . . .. . . ....... ... .. .................. . . ...... ...... . . . .. . . . . . .. . ... . . ................................................. . . .. .. ... . ... ... .. . ... . .. ..... .
lowQualScore : 0 0 55 33 2 0 2 0 0 000 888888 55555 88 0000000 0 88 0000 0 0 2 6666666666666 2 55555555555555 8 555 8 888 5555 8888888888 0 0 888 8 5 0 0 5 222222222222 000 2 555 5555555555555 0 0 2 0000000000 0 0 66 7 0 7777777 777 22 333333333333333333 0 7 999999 444444 7 7 7 55 7 7 0 0 0 33 7 444 4 0 4444444444444444444444444444444444444444444444444 4 4 11 11 666 4 333 888 00 0 777 0 00 00000 0
consensus : TGCAAATGATNAGCTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT---G----TC-A-GTGTTGCACGCGTACGTGCCACGT-CCACGACGAAA-TCATCGACAGCG---GAGGGAATTA-C-GCAGGT-G-TGC-------GT-CTAAAAAG-GT-GTGAAAGTTCAAGGGGGCA-GGAAGGC-TGGT------------TTGAA-C-ATAAGAAAAT---ATACAATGTACTTGTAAA-ANATTTGAACACAAGGCA--TAACAACTTGAAATGCTTC-GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTGA--GTT---AG-------------CGCAGAGCTTGAT-CCAT---TC-GCCTAC------ATTTCTCCAGATT-T-GTGGCCGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGGTGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG--------------T-------------CT---TTG--C--------TTG-T-TTGT--CGGA--GCA--NACGGCGG-A---GCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATACT-GTGATTGA-----CAGC-TGGCGATAC
Reference ( gi|4 ) : TACAAGTGATAAGTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT--------TC-A-GTGTTGCACGCGTACGTGCCACGTGCCACGATAAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGC-------GT-CTAAAAAG-GT-G--AAAGTTCAAGGGGGCA-GGAAGGC-TGGT------------TTGAA-C-ATAAGAAAAT---ATA------ATTT-TAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTTC-GGTTTATTCCGATATCTC-------AATAT--TCCCACGTTGA--GTT---A--------------CGTAGAGCTTGAT-CCAT---TC-GCCTAC------ATTTCTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGATACCTGTTATCCGTGTT-AGAGATGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG--------------T-------------CT---TTG--C--------TCG-T-TTGT--CGGA--GCA--GATGGCAT-A---GCTTACACGC-ACTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATACC-GTGATTGA-----CAGC-TGGCGATAC
gi|1 : TGCAA-TGATTAGCTGAATTTTCAACTTT--ATACTTTATATTAAGTA-GCAC-TA-T-CA------TTCG--CG-GT--AAATTCCTTGAAAC-------ATATTTTGC-TGCAATAGTAC----TT-CAAGATGA-CC-AGCT--------TTTA-GTGTTGCACGCGTAC------CGT-CCACGACAAAAATCATCGACAGTG---GAGGGAATTAAC-GCAGGTTG-TGC-------GTTCTAAAAAG-GT-GTGAAAGTTCAAGGGGGCAAGGAAGGC-TGGT------------TTGAAAC-ATAAGAAAATTACATGT-----ACTT-GTAA-ATATTTGA-CACAAGGCAATTAACAACTTGAAATGCTTA-CGTTTATTCCGATCTCTC-------AATAA--TCCCACGTTGAAAGTT---AA-------------CGTAGAGCTTGATTCCAT---TCCGCCTAC------ATTTCTCCAGATT-T-GT-GCTGGTTTAAGGAAACGGGAATG-AATTTCAAT-CCCCATCTAGCCTT-TCAGGGTACCTGTTATCCTTGTTAAGAGGTGTCCCAACTGCACCGCTT-CAACCA-AG-TTGACTTG--------------TATTTAATCGCGTACT---TTG--CTTG-----TTG-T-TTGT--CGGA--GCA--GA-GGCA--AGAGGCTTACACGC-GCTG-AATAAATGGAATTTTTTTTC-ATGGCCTGAAAATATACT-GTGA-TGA-----CAGC-TGGCG
gi|2 : attnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGCAAATGATA-GTTGAATTTTCAACTTTTTATACTTTATATTA-G-A-GCAC-TA-T-CA------TTCGA-CGAGT--AATTCCATTGAAAC-------ATATTTTGCCTGCA--AGTAC----TT-CAAGTTGAACCCAGTTCACGATT-TC-A-GTGTTGCACGCGTACGTGCCACG----ACA--GAAA-TCATCGAC-GCGATCGACAGA--CG-CTGCAGGT-GTTGCGTTCTTAGT-CTAAAAAGTGTGG--AAGGTTCAAGGGGGCA-GAAAGGCTTGGT------------TTGAA-C-AT-AGAAAAT---ATACAATGTACTTGTAAA-ATATTTGAACACAA-GCA--T---AACTTGAAAT-CTTC-GA-TTATTCC-ATCTCTCAGTCTCGAATAT--CCCCACGTT-A--GTT---AG-------------CGCAGAGCTTGAT-CCAT---TC-GCCTAC------ATTTCTCCAGATTATGGTGGCTGG-TTA--GAAACGGG-ATGAAATTTCACTCCCCCATCTAGCTTTCTCAGGGTA-CTG-TATCCATGTT-AGAGCGGTCCCAACTGCACCGCTTCC-ACCACAG-TTGACTTG--------------TATTTAATCGCTACCT---TTG--C--------TTG-T-TTGT--CGGA--GCAGCGACGGCAG-A---GCTTACACGC-GCTGAAATAAATGGAA----TTTTCAATTGGCTGAAAATATACCTGTGAGTGA-----CAGCTTGGCGATACta
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTT--AGGGTCTGTA--A-GTA-GCAC-TA-TGCAAGCTTTTTTAA-AA-ATCTAATTCGCTTCAAACTTCGAACATATTTTGC-CGCA-TAGTTT----TT-CAANNNNN-NNNNNNN--------NN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN-N-NNNNNN-N-NNN-------NN-NNNNNNNN-NT-G-------T---GGGGGTA-GGAAGGC-TGGTGAACATAGTGTATTGTA-T-ATAAGAACAT---ATA------A-------A-AGGTTTGAACACAA---------------------CTCC-GATTTATTCCGGTCTCTC-------AAGAT--CTCCACGTTGA--GTT---C--------------TGCAGAGTTTAAC-CCAT---T--GCCTACCGGTACAATTCTCCAGATT-T-GTGGCTGG-TTTAGGGAACGGG-ATG-CATTTCACTCCCCTATCTAGCCTT-TCAGGGTACCTGTTATTCGTGTT-ACTGGTGGCCCAGCTGCACCGCTT-T-ACCATAG-TTGACTTGTTATCTCGTTCTTCT-------------CT---TTGTAC--------T-G-T-TTGT--TGGA--GCA--TATGGTGG-A---GCTTACACGC-GCTG-AATCAATGGAA--TCTTTTC-ATTGGCTGAAAACTTGCT-GTGATTGA-----CAGC-TGGCGATAC
gi|5 : ggtagtagcacgTATATTA-GTAAGCACATAAT-CA------TTCGAACG-GT--AATTCCCTTGAAA--------ATATTTTGC-TGCA-TAGTAC----TTTCAAGATGA-CCCAGCT--------TT-AAGTGATGCACGCGTACGTGCCACG--------------------ACAGTG---GAGGGAATTA-C-GCAGG--G-TGC-------AT-CTAAAAAG-GT-GTGAAAGTTCAAGGGGGCA-GGAAGGC-TG-T------------TTGAA-CCATAAGAAAAT---ATACAATGTACTTGTAAATAGATTTGAACACAAGGCA--TAACAACTTGAAATGCTTCCGATTTATCCCGATCTCTC-------AATATATCCCCACGTTG---GTT---A--------------CGTAGAGCTTGAT-CCAT---TC-GCCTAC------ATT-CTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTA-AAGGCTGTCCC-ACTGCACCGCTT-C-ACCACAGTTTGACTTG--------------TATTTAATCGCGTACT---TTG--C--------TTGTT-TTGTCCCGGAGGGCA---ACGGCAGAA---GCTTACACGCTGCTGAAATAAATGGAA--TTTTTTC-ATTGGTTG-AAATATACT-GTGATTGAACAGCTAGC-TGGCGATAgtt
gi|14 : CCCTTGAAAC-------ATATTTTGC-TGCA-TAGTACAAGGTT-CAAGATGA-CCAAGCTTCAGTCAATC-A-GTGTTGCACGCGTACGTGCacg
gi|6 : GAAATGCTTA-GATTTGTTCCTGTCCCTC-------AATAT--CTCCACGTTGA--GTTTGTAGGCTGGTCTTC---CGCAGAGCTCGAT-CCATCGATC-GCCTAC------ATTTCTCGATATT-T-TTGGCCGG-TTTTGGGAATAGG-ATG-AACTTAACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCGGTGTT-AAAGGTACCCCAACTGCACCGCTT-T-ACCATAG-CTGCCTTG--------------T-------------CT---
gi|11 : agaaacaacatataacaaacttcaaactttaccttagtgcaaacacgTTGTTCCTGTCCCTC-------AATAT--CTCCAGGTTGA--GTT---GGTAGGCTGGTCTTCCGCAGAGCTGGAT-CCAT----C-GCCTAC------ATTTATCGAGTTT-T-GTGGCCGG-TTagttgtaatcacgtacctctttgttatgtacagtctgtaatgtttgtcggagcagtcgattagcttgtacgcgcggaataaatgaaactttttcattggct
gi|7 : ttagagT-CCAT---TC-GCCTAC------ATTTCTCCAGATT-T-GTGACTGG-TTTAGGTAACGGG-ATG-AATTTCACTCCCCCATTTAGCCTT-TCAGGGCACCTGTTATCCGTGTT-AGAGGTGTCCCAACTGCACCGTTT-C-ACCACAG-TTGACTTG--------------T-------------ATA--TTA--C--------TTG-T-TTGT--CGGA--GCA--CATGGCGG-A---GCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATACT-GTG-TTGA-----CAGC-TGGCGATAC
gi|9 : GGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AG---TGTCCCAACTGCACCACTT-C-ACCACAG-TTGACTT--------------------------------------------------G-T-TTGT--CGGA--GCA--CATGGCGG-A---GCATACACGC-GCTG-AGTAAATGAAA---TTTTTC-ATTGGCTGAAAATATACT-GTGATTGA-----CAGC-AGGCGATACg
gi|13 : CCCCCATCTAGCCTT-TCAGGGTACCTATTATCGGTGTT-ACAGGTACCCCAACTGCACCGCTT-T-ACCATAT-CTGCCTTG--------------T-------------CT---g
gi|12 : TACCTGTTATTCGTGTT-ACTGGTGCCCCAACTGCACCGCTT-T-ACCATAG-TTGACTTG--------------T-------------AA---T----C--------TCG-TATTTT--CGGA--GCA--TATGGCGG-A---GCTTACACGC-GCTG-Aagttgtaatcacgtacct
gi|10 : TATCCGTGTT-AGAGGTGTCCCAACTGCATCGTTT-C-ACCACAG-TTGACTTG--------------T-------------ATCAATCG--CGTATCTAATTG-T-TTGT--CGGA--GCA--CATGGCGG-A---GGTTACACGC-GCTG-AATAAATGGAA--TTTTTT
gi|6 : G-T-TTGT--CGGA--GCA--GTCGAT-T-A---GCTTGTACGC-GCGG-AATAAATGAAA--CTTTTTC-ATTGGCT
gi|15 : agaaacaacatataacaaacttcaaactttaccttagtgcaaacacggaaatgcttagatttgttcctgtccctcaatatctccacgttgagtttgtaggctggtcttccgcagagctcgatccatcgatcgcctacatttctcgatatttttggccggttttgggaataggatgaacttaactcccccatctagcctttcagggtacctgttatcggtgttaaaggtaccccaactgcaccgctttaccatagctgccttgtctagttgtaatcacgtacctctttgttatgtacagtctgtaatCGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGG-TGAAAATGTACC-GTGATTGA-----CAGC-TGG
gi|16 : GGCTGAAAATATGCT-GTGATTGA-----CAGC-TGGCGATAC
gi|19 : TGATTGA-----CAGC-TGGCGATACgt
gi|18 : TGATTGA-----CAGC-TGGCGATACgttaatt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TACCTTCGTACATACGTATAAATGTTTGACCTTTCCTCTTTCTCTCAGAATTTTCTCATTTAGTTGACTGTGTGGCCGTCCATGGAGTTTTATATATTTGCTCGCTTTGTCGAGATTTCCTCCTGGTTTCGGAAATGGCACAAATACAATAACCCCTCAAGTCGATCTGGATATCGGCTGTCTGTATTGCATGTTCCCCAACAACAACGCCTCACCAT
Unaligned ( gi|17 ): GTAGTAGCACGCTTTAGGGTCTGTAAATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 222222 11 2222222 1111 55555555555 33333333333333 111 11 3333333 1 11 1111 1 11111 1111111 777777777777777777 11111 111111 11111 2222222222222222222222222222222222222222222222222222222222222 111
lowQualScore : 2 4 0 33 0 8 0 8 8 8 8 333333 88 8 11 1111111 6 6 4444 6 6 4 66666666666 0 88888888888888 2 1 444 2 888 00 8 4444444 8 0 0 8 8 0 8 8 3 11 0 0000 1 3 0 8 1 0 0 33333 2 888 11 4 8888888 77 77 666666666666666666 5 5 00000 444444 5 5 2 5 22 5 5 4 3 4 3 3 3 0 22222 666 3333333333333333333333333333333333333333333333333333333333333 4 4 55 55 000 4 99 0 3 7 777 4 4 99999 3
lowQualScore : . . . .. . . . . . . . ...... .. . .. ....... . . .... . . . ........... . .............. . . ... . ... .. . ....... . . . . . . . . . .. . .... . . . . . . . ..... . ... .. . ....... .. .. .................. . . ..... ...... . . . . .. . . . . . . . . . ..... ... ............................................................. . . .. .. ... . .. . . . ... . . ..... .
lowQualScore : 3 0 7 88 8 0 8 0 0 0 0 000000 88 0 00 7777777 7 7 2222 7 7 3 22222222222 2 44444444444444 8 8 000 8 222 88 0 0000000 0 6 8 0 0 8 0 0 8 00 8 2222 0 2 8 0 0 8 0 00000 5 666 66 3 6666666 99 99 777777777777777777 7 0 99999 444444 0 0 0 0 77 0 0 4 6 3 6 6 6 4 77777 444 8888888888888888888888888888888888888888888888888888888888888 0 0 55 55 444 6 55 7 6 3 888 4 4 11111 6
consensus : TGCAAGTGAT-AGTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------N---TCAGTGTTGCACGCGTACGTGCCACGT-CCACGACGAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-GT-GCGTT------CTAAAAAG-GTGTGAAAGTTCAAGGGGGC-AGGAAGGCT-GGTTTG-AAC-ATAAGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTG--AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCCTAC------ATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-----TTG---ACTTG--------------T---------C---CT---TTGC--------T---------------TG-T-TTGT--CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
Reference ( family-5842 ) : TGCAAATGATNAGCTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------G---TCAGTGTTGCACGCGTACGTGCCACGT-CCACGACGAAA-TCATCGACAGCG---GAGGGAATTA-C-GCAGGT-GT-GCGT-------CTAAAAAG-GTGTGAAAGTTCAAGGGGGC-AGGAAGGCT-GGTTTG-AAC-ATAAGAAA--ATATACAATGTACTTGTAAA-ANATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTG--AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCCTAC------ATTTCTCCAGATT-T-GTGGCCGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-----TTG---ACTTG--------------T-------------CT---TTGC--------T---------------TG-T-TTGT--CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
gi|1 : TGCAA-TGATTAGCTGAATTTTCAACTTT--ATACTTTATATTAAGTA-GCAC-TA-T-CA------TTCG--CG-GT--AAATTCCTTGAAAC-------ATATTTTGC-TGCAATAGTAC----TT-CAAGATGA-CC-AGCT-------T---TTAGTGTTGCACGCGTAC------CGT-CCACGACAAAAATCATCGACAGTG---GAGGGAATTAAC-GCAGGTTGT-GCGTT------CTAAAAAG-GTGTGAAAGTTCAAGGGGGCAAGGAAGGCT-GGTTTGAAAC-ATAAGAAA--AT-TAC-ATGTACTTGT-AA-ATATTTG-ACACAAGGCAATTAACAACTTGAAATGCTTAC-G-TTTATTCCGATCTCTC-------AATAA--TCCCACGTTGAAAGTT---AA-------------C-GTAGAGCTTGATTCCAT---TCCGCCTAC------ATTTCTCCAGATT-T-GT-GCTGGTTTAAGGAAACGGGAATG-AATTTCAAT-CCCCATCTAGCCTT-TCAGGGTACCTGTTATCCTTGTTAAGAGG-TGTCCCAACTGCACCGCTT-CAACCA-AG-----TTG---ACTTG--------------TATTTAATCGCGTACT---TTGCTTG-----T---------------TG-T-TTGT--CGGA--GCA--GA-GGCAAGAGGCTTACACGC-GCTG-AATAAATGGAATTTTTTTTC-ATGGCCTGAAAATATA-CTGTGA-TGA-----CAGC-TGGCG
gi|10 : attnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTATCCGTGTT-AGAGG-TGTCCCAACTGCATCGTTT-C-ACCACAG-----TTG---ACTTG--------------T-------------ATCAATCGCGTATCTAAT---------------TG-T-TTGT--CGGA--GCA--CATGGC--GGAGGTTACACGC-GCTG-AATAAATGGAA--TTTTTTta
gi|11 : TT-A-GAGTTGTTCCTGTCCCTC-------AATAT--CTCCAGGTTG--AGTT---GGTAGGCTGGTCTTCC-GCAGAGCTGGA-TCCAT-----CGCCTAC------ATTTATCGAGTTT-T-GTGGCCGG-TT
gi|12 : TACCTGTTATTCGTGTT-ACTGG-TGCCCCAACTGCACCGCTT-T-ACCATAG-----TTG---ACTTG--------------T-------------AA---T--C--------T---------------CG-TATTTT--CGGA--GCA--TATGGC--GGAGCTTACACGC-GCTG-A
gi|13 : CCCCCATCTAGCCTT-TCAGGGTACCTATTATCGGTGTT-ACAGG-TACCCCAACTGCACCGCTT-T-ACCATAT-----CTG---CCTTG--------------T-------------CT---
gi|14 : CCCTTGAAAC-------ATATTTTGC-TGCA-TAGTACAAGGTT-CAAGATGA-CCAAGCTTCAGTCAA---TCAGTGTTGCACGCGTACGTGCagttgtaatcacgtacct
gi|15 : CGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGG-TGAAAATGTA-CCGTGATTGA-----CAGC-TGG
gi|16 : GGCTGAAAATATG-CTGTGATTGA-----CAGC-TGGCGATAC
gi|18 : TGATTGA-----CAGC-TGGCGATACgt
gi|19 : TGATTGA-----CAGC-TGGCGATACgttaatt
gi|2 : TGCAAATGAT-AGTTGAATTTTCAACTTTTTATACTTTATATTA-G-A-GCAC-TA-T-CA------TTCGA-CGAGT--AATTCCATTGAAAC-------ATATTTTGCCTGCA--AGTAC----TT-CAAGTTGAACCCAGTTCAC----GATTTCAGTGTTGCACGCGTACGTGCCACG----ACA--GAAA-TCATCGAC-GCGATCGACAGA--CG-CTGCAGGT-GTTGCGTTCTTAGTCTAAAAAGTGTG-GAAGGTTCAAGGGGGC-AGAAAGGCTTGGTTTG-AAC-ATA-GAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAA-GCA--T---AACTTGAAAT-CTT-C-GA-TTATTCC-ATCTCTCAGTCTCGAATAT--CCCCACGTT---AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCCTAC------ATTTCTCCAGATTATGGTGGCTGG-TTA--GAAACGGG-ATGAAATTTCACTCCCCCATCTAGCTTTCTCAGGGTA-CTG-TATCCATGTT-AGAGC-GGTCCCAACTGCACCGCTTCC-ACCACAG-----TTG---ACTTG--------------TATTTAATCGCTACCT---TTGC--------T---------------TG-T-TTGT--CGGA--GCAGCGACGGC--AGAGCTTACACGC-GCTGAAATAAATGGAA----TTTTCAATTGGCTGAAAATATACCTGTGAGTGA-----CAGCTTGGCGATACgttaatt
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTT--AGGGTCTGTA--A-GTA-GCAC-TA-TGCAAGCTTTTTTAA-AA-ATCTAATTCGCTTCAAACTTCGAACATATTTTGC-CGCA-TAGTTT----TT-CAANNNNN-NNNNNNN-------N---NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN-N-NNNNNN-NN-NNNN-------NNNNNNNN-NTGTG----------GGGGT-AGGAAGGCT-GGT--G-AAC-ATAGTGTATTGTATATAA-GAACATATAAA-AGGTTTGAACACAA---------------------CTC-C-GATTTATTCCGGTCTCTC-------AAGAT--CTCCACGTTG--AGTT------------------CTGCAGAGTTTAA-CCCAT---T--GCCTACCGGTACAATTCTCCAGATT-T-GTGGCTGG-TTTAGGGAACGGG-ATG-CATTTCACTCCCCTATCTAGCCTT-TCAGGGTACCTGTTATTCGTGTT-ACTGG-TGGCCCAGCTGCACCGCTT-T-ACCATAG-----TTG---ACTTGTTATCTCGTTCTTCT-------------CT---TTGTA-------C---------------TG-T-TTGT--TGGA--GCA--TATGGT--GGAGCTTACACGC-GCTG-AATCAATGGAA--TCTTTTC-ATTGGCTGAAAACTTG-CTGTGATTGA-----CAGC-TGGCGATAC
gi|4 : ggtagtagcacgTACAAGTGATAAGTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-----------TCAGTGTTGCACGCGTACGTGCCACGTGCCACGATAAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-GT-GCGT-------CTAAAAAG-GTG--AAAGTTCAAGGGGGC-AGGAAGGCT-GGTTTG-AAC-ATAAGAAA--ATATA------ATTT-TAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GGTTTATTCCGATATCTC-------AATAT--TCCCACGTTG--AGTT---A--------------C-GTAGAGCTTGA-TCCAT---T-CGCCTAC------ATTTCTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGATACCTGTTATCCGTGTT-AGAGA-TGTCCCAACTGCACCGCTT-C-ACCACAG-----TTG---ACTTG--------------T-------------CT---TTGC--------T---------------CG-T-TTGT--CGGA--GCA--GATGGC--ATAGCTTACACGC-ACTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CCGTGATTGA-----CAGC-TGGCGATACgtt
gi|5 : TATATTA-GTAAGCACATAAT-CA------TTCGAACG-GT--AATTCCCTTGAAA--------ATATTTTGC-TGCA-TAGTAC----TTTCAAGATGA-CCCAGCT-------T---TAAGTGATGCACGCGTACGTGCCACG--------------------ACAGTG---GAGGGAATTA-C-GCAGG--GT-GCAT-------CTAAAAAG-GTGTGAAAGTTCAAGGGGGC-AGGAAGGCT-G-TTTG-AACCATAAGAAA--ATATACAATGTACTTGTAAATAGATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-CCGATTTATCCCGATCTCTC-------AATATATCCCCACGTTG---GTT---A--------------C-GTAGAGCTTGA-TCCAT---T-CGCCTAC------ATT-CTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTG-T-AAAGGCTGTCCC-ACTGCACCGCTT-C-ACCACAGT----TTG---ACTTG--------------TATTTAATCGCGTACT---TTGC--------T---------------TGTT-TTGTCCCGGAGGGCA---ACGGCA-GAAGCTTACACGCTGCTGAAATAAATGGAA--TTTTTTC-ATTGGTTG-AAATATA-CTGTGATTGAACAGCTAGC-TGGCGATA
gi|6 : GAAATGCTT-A-GATTTGTTCCTGTCCCTC-------AATAT--CTCCACGTTG--AGTTTGTAGGCTGGTCTTC---C-GCAGAGCTCGA-TCCATCGAT-CGCCTAC------ATTTCTCGATATT-T-TTGGCCGG-TTTTGGGAATAGG-ATG-AACTTAACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCGGTGTT-AAAGG-TACCCCAACTGCACCGCTT-T-ACCATAGCTGCCTTGTCTAGTTG--------------TAATCACGTACCT-CT---TTGT--------TATGTACAGTCTGTAATG-T-TTGT--CGGA--GCA--GTCGAT--T-AGCTTGTACGC-GCGG-AATAAATGAAA--CTTTTTC-ATTGGCTacg
gi|7 : agaaacaacatataacaaacttcaaactttaccttagtgcaaacacg-TCCAT---T-CGCCTAC------ATTTCTCCAGATT-T-GTGACTGG-TTTAGGTAACGGG-ATG-AATTTCACTCCCCCATTTAGCCTT-TCAGGGCACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGTTT-C-ACCACAG-----TTG---ACTTG--------------T-------------ATA--TTAC--------T---------------TG-T-TTGT--CGGA--GCA--CATGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTG-TTGA-----CAGC-TGGCGATAC
gi|9 : GGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-A---G-TGTCCCAACTGCACCACTT-C-ACCACAG-----TTG---A----------------------------------------C--------T---------------TG-T-TTGT--CGGA--GCA--CATGGC--GGAGCATACACGC-GCTG-AGTAAATGAAA---TTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-AGGCGATACg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TACCTTCGTACATACGTATAAATGTTTGACCTTTCCTCTTTCTCTCAGAATTTTCTCATTTAGTTGACTGTGTGGCCGTCCATGGAGTTTTATATATTTGCTCGCTTTGTCGAGATTTCCTCCTGGTTTCGGAAATGGCACAAATACAATAACCCCTCAAGTCGATCTGGATATCGGCTGTCTGTATTGCATGTTCCCCAACAACAACGCCTCACCAT
Unaligned ( gi|17 ): GTAGTAGCACGCTTTAGGGTCTGTAAATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 222222 11 2222222 1111 44444444444444 33333333333333 111 1111 111 1111 11 1111 1 11111 1111111 777777777777777777 11111 111111 111111111111111111111111111111111111111111111111111111111111111 222222222 111
lowQualScore : 2 777 33 0 8 0 8 8 8 8 333333 88 8 11 1111111 6 6 4444 6 6 4 88888888888888 0 88888888888888 2 444 2 888 1111 222 7777 88 0 8 8 0 8 8 0 11 0 0000 1 3 0 8 0 0 0 33333 2 888 11 4 8888888 77 77 666666666666666666 5 5 00000 444444 5 5 5 22 5 5 4 3 4 3 3 3 0 3 666666666666666666666666666666666666666666666666666666666666666 4 111111111 55 000 4 99 3 7 777 4 4 99999 3
lowQualScore : . ... .. . . . . . . . ...... .. . .. ....... . . .... . . . .............. . .............. . ... . ... .... ... .... .. . . . . . . . .. . .... . . . . . . . ..... . ... .. . ....... .. .. .................. . . ..... ...... . . . .. . . . . . . . . . . ............................................................... . ......... .. ... . .. . . ... . . ..... .
lowQualScore : 0 777 88 8 0 8 0 0 0 0 000000 88 0 00 7777777 7 7 2222 7 7 3 33333333333333 2 44444444444444 8 000 8 222 0000 888 0000 88 8 0 0 8 0 0 8 00 8 2222 0 2 8 0 6 8 0 00000 5 666 66 3 6666666 99 99 777777777777777777 7 0 99999 444444 0 0 0 77 0 0 4 6 3 6 6 6 4 6 333333333333333333333333333333333333333333333333333333333333333 0 555555555 55 444 6 55 6 3 888 4 4 11111 6
consensus : TGCAAGTGAT-A-GTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------N------TCAGTGTTGCACGCGTACGTGCCACGT-CCACGACGAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGC-AGGAAGGC-TGGTTTG-AAC-ATAAGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTG--AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T-------------C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
Reference ( family-5842 ) : TGCAAGTGAT-A-GTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------N------TCAGTGTTGCACGCGTACGTGCCACGT-CCACGACGAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGC-AGGAAGGC-TGGTTTG-AAC-ATAAGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTG--AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T-------------C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
gi|1 : TGCAA-TGATTA-GCTGAATTTTCAACTTT--ATACTTTATATTAAGTA-GCAC-TA-T-CA------TTCG--CG-GT--AAATTCCTTGAAAC-------ATATTTTGC-TGCAATAGTAC----TT-CAAGATGA-CC-AGCT-------T------TTAGTGTTGCACGCGTAC------CGT-CCACGACAAAAATCATCGACAGTG---GAGGGAATTAAC-GCAGGTTG-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGCAAGGAAGGC-TGGTTTGAAAC-ATAAGAAA--AT-TAC-ATGTACTTGT-AA-ATATTTG-ACACAAGGCAATTAACAACTTGAAATGCTTAC-G-TTTATTCCGATCTCTC-------AATAA--TCCCACGTTGAAAGTT---AA-------------C-GTAGAGCTTGATTCCAT---TCCGCC------TACATTTCTCCAGATT-T-GT-GCTGGTTTAAGGAAACGGGAATG-AATTTCAAT-CCCCATCTAGCCTT-TCAGGGTACCTGTTATCCTTGTTAAGAGG-TGTCCCAACTGCACCGCTT-CAACCA-AG-TTGACTTGTATTTAAT-------------CGCGTA--------------CTTTGCTTG-----T-T-----G-TTTGT---------CGGA--GCA--GA-GGCAAGAGGCTTACACGC-GCTG-AATAAATGGAATTTTTTTTC-ATGGCCTGAAAATATA-CTGTGA-TGA-----CAGC-TGGCG
gi|10 : attnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTATCCGTGTT-AGAGG-TGTCCCAACTGCATCGTTT-C-ACCACAG-TTGACTTGTA-----T-------------C-------------------AATCGCGTATCTAAT-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGGTTACACGC-GCTG-AATAAATGGAA--TTTTTTta
gi|11 : TT-A-GAGTTGTTCCTGTCCCTC-------AATAT--CTCCAGGTTG--AGTT---GGTAGGCTGGTCTTCC-GCAGAGCTGGA-TCCAT-----CGCC------TACATTTATCGAGTTT-T-GTGGCCGG-TT
gi|12 : TACCTGTTATTCGTGTT-ACTGG-TGCCCCAACTGCACCGCTT-T-ACCATAG-TTGACTTG-------T-------------A-------------------ATCT-C--------G-T-----A-TTT-T---------CGGA--GCA--TATGGC--GGAGCTTACACGC-GCTG-A
gi|13 : CCCCCATCTAGCCTT-TCAGGGTACCTATTATCGGTGTT-ACAGG-TACCCCAACTGCACCGCTT-T-ACCATAT-CTGCCTTG-------T-------------C-------------------
gi|14 : CCCTTGAAAC-------ATATTTTGC-TGCA-TAGTACAAGGTT-CAAGATGA-CCAAGCTTCAGTCAA------TCAGTGTTGCACGCGTACGTGCtagttgtaatcacgtacct
gi|15 : CGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGG-TGAAAATGTA-CCGTGATTGA-----CAGC-TGG
gi|16 : GGCTGAAAATATG-CTGTGATTGA-----CAGC-TGGCGATAC
gi|18 : TGATTGA-----CAGC-TGGCGATACgt
gi|19 : TGATTGA-----CAGC-TGGCGATACgttaatt
gi|2 : TGCAAATGAT-A-GTTGAATTTTCAACTTTTTATACTTTATATTA-G-A-GCAC-TA-T-CA------TTCGA-CGAGT--AATTCCATTGAAAC-------ATATTTTGCCTGCA--AGTAC----TT-CAAGTTGAACCCAGTT-------CACGATTTCAGTGTTGCACGCGTACGTGCCACG----ACA--GAAA-TCATCGAC-GCGATCGACAGA--CG-CTGCAGGT-GTTGCGTTCTTAGTCTAAAAAGTGTGGAAGGTTCAAGGGGGC-AGAAAGGCTTGGTTTG-AAC-AT-AGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAA-GCA--T---AACTTGAAAT-CTT-C-GA-TTATTCC-ATCTCTCAGTCTCGAATAT--CCCCACGTT---AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATTATGGTGGCTGG-TTA--GAAACGGG-ATGAAATTTCACTCCCCCATCTAGCTTTCTCAGGGTA-CTG-TATCCATGTT-AGAGC-GGTCCCAACTGCACCGCTTCC-ACCACAG-TTGACTTG-------TATTTAATCGCTA-C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCAGCGACGGC--AGAGCTTACACGC-GCTGAAATAAATGGAA----TTTTCAATTGGCTGAAAATATACCTGTGAGTGA-----CAGCTTGGCGATACgttaatt
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTT--AGGGTCTGTA--A-GTA-GCAC-TA-TGCAAGCTTTTTTAA-AA-ATCTAATTCGCTTCAAACTTCGAACATATTTTGC-CGCA-TAGTTT----TT-CAA-NNNN-NNNNNNN-------N------NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN-N-NNNNNN-N-NNNNNNN-NN----NNNNNNTGT-G---------GGG-GT-AGGAAGGC-TGG--TG-AAC-ATAGTGTATTGTATATAA-GAACATATAAA-AGGTTTGAACACAA---------------------CTC-C-GATTTATTCCGGTCTCTC-------AAGAT--CTCCACGTTG--AGTT------------------CTGCAGAGTTTAA-CCCAT---T--GCCTACCGGTACAATTCTCCAGATT-T-GTGGCTGG-TTTAGGGAACGGG-ATG-CATTTCACTCCCCTATCTAGCCTT-TCAGGGTACCTGTTATTCGTGTT-ACTGG-TGGCCCAGCTGCACCGCTT-T-ACCATAG-TTGACTTG-------TTATCTCGTTCTTCT-------------------CTTTGTA-------C-T-----G-TTTGT---------TGGA--GCA--TATGGT--GGAGCTTACACGC-GCTG-AATCAATGGAA--TCTTTTC-ATTGGCTGAAAACTTG-CTGTGATTGA-----CAGC-TGGCGATAC
gi|4 : ggtagtagcacgTACAAGTGAT-AAGTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT--------------TCAGTGTTGCACGCGTACGTGCCACGTGCCACGATAAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGT-C-TA----AAAAGGTG---AAAGTTCAAGGGGGC-AGGAAGGC-TGGTTTG-AAC-ATAAGAAA--ATATA------ATTT-TAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GGTTTATTCCGATATCTC-------AATAT--TCCCACGTTG--AGTT---A--------------C-GTAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGATACCTGTTATCCGTGTT-AGAGA-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T---------------------------------CTTTGC--------T-C-----G-TTTGT---------CGGA--GCA--GATGGC--ATAGCTTACACGC-ACTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CCGTGATTGA-----CAGC-TGGCGATACgtt
gi|5 : TATATTA-GTAAGCACATAAT-CA------TTCGAACG-GT--AATTCCCTTGAAA--------ATATTTTGC-TGCA-TAGTAC----TTTCAAGATGA-CCCAGCT-------T------TAAGTGATGCACGCGTACGTGCCACG--------------------ACAGTG---GAGGGAATTA-C-GCAGG--G-TGCAT-C-TA----AAAAGGTGT-GAAAGTTCAAGGGGGC-AGGAAGGC-TG-TTTG-AACCATAAGAAA--ATATACAATGTACTTGTAAATAGATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-CCGATTTATCCCGATCTCTC-------AATATATCCCCACGTTG---GTT---A--------------C-GTAGAGCTTGA-TCCAT---T-CGCC------TACATT-CTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTG-T-AAAGGCTGTCCC-ACTGCACCGCTT-C-ACCACAGTTTGACTTGTATTTAAT-------------CGCGTA--------------CTTTGC--------T-T-----GTTTTGTCC-------CGGAGGGCA---ACGGCA-GAAGCTTACACGCTGCTGAAATAAATGGAA--TTTTTTC-ATTGGTTG-AAATATA-CTGTGATTGAACAGCTAGC-TGGCGATA
gi|6 : GAAATGCTT-A-GATTTGTTCCTGTCCCTC-------AATAT--CTCCACGTTG--AGTTTGTAGGCTGGTCTTC---C-GCAGAGCTCGA-TCCATCGAT-CGCC------TACATTTCTCGATATT-T-TTGGCCGG-TTTTGGGAATAGG-ATG-AACTTAACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCGGTGTT-AAAGG-TACCCCAACTGCACCGCTT-T-ACCATAG-CTGCCTTG-------T-------------CTAGTTGTAATCACGTACCTCTTTGT--------TATGTACAG-TCTGTAATGTTTGTCGGA--GCA--GTCGAT---TAGCTTGTACGC-GCGG-AATAAATGAAA--CTTTTTC-ATTGGCTacg
gi|7 : agaaacaacatataacaaacttcaaactttaccttagtgcaaacacg-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGACTGG-TTTAGGTAACGGG-ATG-AATTTCACTCCCCCATTTAGCCTT-TCAGGGCACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGTTT-C-ACCACAG-TTGACTTG-------T-------------A-------------------TATTAC--------T-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTG-TTGA-----CAGC-TGGCGATAC
gi|9 : GGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-A---G-TGTCCCAACTGCACCACTT-C-ACCACAG-TTGA--------------------------------------------------C--------T-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGCATACACGC-GCTG-AGTAAATGAAA---TTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-AGGCGATACg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TACCTTCGTACATACGTATAAATGTTTGACCTTTCCTCTTTCTCTCAGAATTTTCTCATTTAGTTGACTGTGTGGCCGTCCATGGAGTTTTATATATTTGCTCGCTTTGTCGAGATTTCCTCCTGGTTTCGGAAATGGCACAAATACAATAACCCCTCAAGTCGATCTGGATATCGGCTGTCTGTATTGCATGTTCCCCAACAACAACGCCTCACCAT
Unaligned ( gi|17 ): GTAGTAGCACGCTTTAGGGTCTGTAAATA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 222222 11 2222222 1111 44444444444444 33333333333333 111 1111 111 1111 11 1111 1 11111 1111111 777777777777777777 11111 111111 111111111111111111111111111111111111111111111111111111111111111 222222222 111
lowQualScore : 2 777 33 0 8 0 8 8 8 8 333333 88 8 11 1111111 6 6 4444 6 6 4 88888888888888 0 88888888888888 2 444 2 888 1111 222 7777 88 0 8 8 0 8 8 0 11 0 0000 1 3 0 8 0 0 0 33333 2 888 11 4 8888888 77 77 666666666666666666 5 5 00000 444444 5 5 5 22 5 5 4 3 4 3 3 3 0 3 666666666666666666666666666666666666666666666666666666666666666 4 111111111 55 000 4 99 3 7 777 4 4 99999 3
lowQualScore : . ... .. . . . . . . . ...... .. . .. ....... . . .... . . . .............. . .............. . ... . ... .... ... .... .. . . . . . . . .. . .... . . . . . . . ..... . ... .. . ....... .. .. .................. . . ..... ...... . . . .. . . . . . . . . . . ............................................................... . ......... .. ... . .. . . ... . . ..... .
lowQualScore : 0 777 88 8 0 8 0 0 0 0 000000 88 0 00 7777777 7 7 2222 7 7 3 33333333333333 2 44444444444444 8 000 8 222 0000 888 0000 88 8 0 0 8 0 0 8 00 8 2222 0 2 8 0 6 8 0 00000 5 666 66 3 6666666 99 99 777777777777777777 7 0 99999 444444 0 0 0 77 0 0 4 6 3 6 6 6 4 6 333333333333333333333333333333333333333333333333333333333333333 0 555555555 55 444 6 55 6 3 888 4 4 11111 6
consensus : TGCAAGTGAT-A-GTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------N------TCAGTGTTGCACGCGTACGTGCCACGT-CCACGACGAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGC-AGGAAGGC-TGGTTTG-AAC-ATAAGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTG--AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T-------------C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
Reference ( family-5842 ) : TGCAAGTGAT-A-GTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------N------TCAGTGTTGCACGCGTACGTGCCACGT-CCACGACGAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGC-AGGAAGGC-TGGTTTG-AAC-ATAAGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTG--AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T-------------C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
gi|1 : TGCAA-TGATTA-GCTGAATTTTCAACTTT--ATACTTTATATTAAGTA-GCAC-TA-T-CA------TTCG--CG-GT--AAATTCCTTGAAAC-------ATATTTTGC-TGCAATAGTAC----TT-CAAGATGA-CC-AGCT-------T------TTAGTGTTGCACGCGTAC------CGT-CCACGACAAAAATCATCGACAGTG---GAGGGAATTAAC-GCAGGTTG-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGCAAGGAAGGC-TGGTTTGAAAC-ATAAGAAA--AT-TAC-ATGTACTTGT-AA-ATATTTG-ACACAAGGCAATTAACAACTTGAAATGCTTAC-G-TTTATTCCGATCTCTC-------AATAA--TCCCACGTTGAAAGTT---AA-------------C-GTAGAGCTTGATTCCAT---TCCGCC------TACATTTCTCCAGATT-T-GT-GCTGGTTTAAGGAAACGGGAATG-AATTTCAAT-CCCCATCTAGCCTT-TCAGGGTACCTGTTATCCTTGTTAAGAGG-TGTCCCAACTGCACCGCTT-CAACCA-AG-TTGACTTGTATTTAAT-------------CGCGTA--------------CTTTGCTTG-----T-T-----G-TTTGT---------CGGA--GCA--GA-GGCAAGAGGCTTACACGC-GCTG-AATAAATGGAATTTTTTTTC-ATGGCCTGAAAATATA-CTGTGA-TGA-----CAGC-TGGCG
gi|10 : attnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTATCCGTGTT-AGAGG-TGTCCCAACTGCATCGTTT-C-ACCACAG-TTGACTTGTA-----T-------------C-------------------AATCGCGTATCTAAT-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGGTTACACGC-GCTG-AATAAATGGAA--TTTTTTta
gi|11 : TT-A-GAGTTGTTCCTGTCCCTC-------AATAT--CTCCAGGTTG--AGTT---GGTAGGCTGGTCTTCC-GCAGAGCTGGA-TCCAT-----CGCC------TACATTTATCGAGTTT-T-GTGGCCGG-TT
gi|12 : TACCTGTTATTCGTGTT-ACTGG-TGCCCCAACTGCACCGCTT-T-ACCATAG-TTGACTTG-------T-------------A-------------------ATCT-C--------G-T-----A-TTT-T---------CGGA--GCA--TATGGC--GGAGCTTACACGC-GCTG-A
gi|13 : CCCCCATCTAGCCTT-TCAGGGTACCTATTATCGGTGTT-ACAGG-TACCCCAACTGCACCGCTT-T-ACCATAT-CTGCCTTG-------T-------------C-------------------
gi|14 : CCCTTGAAAC-------ATATTTTGC-TGCA-TAGTACAAGGTT-CAAGATGA-CCAAGCTTCAGTCAA------TCAGTGTTGCACGCGTACGTGCtagttgtaatcacgtacct
gi|15 : CGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGG-TGAAAATGTA-CCGTGATTGA-----CAGC-TGG
gi|16 : GGCTGAAAATATG-CTGTGATTGA-----CAGC-TGGCGATAC
gi|18 : TGATTGA-----CAGC-TGGCGATACgt
gi|19 : TGATTGA-----CAGC-TGGCGATACgttaatt
gi|2 : TGCAAATGAT-A-GTTGAATTTTCAACTTTTTATACTTTATATTA-G-A-GCAC-TA-T-CA------TTCGA-CGAGT--AATTCCATTGAAAC-------ATATTTTGCCTGCA--AGTAC----TT-CAAGTTGAACCCAGTT-------CACGATTTCAGTGTTGCACGCGTACGTGCCACG----ACA--GAAA-TCATCGAC-GCGATCGACAGA--CG-CTGCAGGT-GTTGCGTTCTTAGTCTAAAAAGTGTGGAAGGTTCAAGGGGGC-AGAAAGGCTTGGTTTG-AAC-AT-AGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAA-GCA--T---AACTTGAAAT-CTT-C-GA-TTATTCC-ATCTCTCAGTCTCGAATAT--CCCCACGTT---AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATTATGGTGGCTGG-TTA--GAAACGGG-ATGAAATTTCACTCCCCCATCTAGCTTTCTCAGGGTA-CTG-TATCCATGTT-AGAGC-GGTCCCAACTGCACCGCTTCC-ACCACAG-TTGACTTG-------TATTTAATCGCTA-C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCAGCGACGGC--AGAGCTTACACGC-GCTGAAATAAATGGAA----TTTTCAATTGGCTGAAAATATACCTGTGAGTGA-----CAGCTTGGCGATACgttaatt
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTT--AGGGTCTGTA--A-GTA-GCAC-TA-TGCAAGCTTTTTTAA-AA-ATCTAATTCGCTTCAAACTTCGAACATATTTTGC-CGCA-TAGTTT----TT-CAA-NNNN-NNNNNNN-------N------NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNN---NNNNNNNNNN-N-NNNNNN-N-NNNNNNN-NN----NNNNNNTGT-G---------GGG-GT-AGGAAGGC-TGG--TG-AAC-ATAGTGTATTGTATATAA-GAACATATAAA-AGGTTTGAACACAA---------------------CTC-C-GATTTATTCCGGTCTCTC-------AAGAT--CTCCACGTTG--AGTT------------------CTGCAGAGTTTAA-CCCAT---T--GCCTACCGGTACAATTCTCCAGATT-T-GTGGCTGG-TTTAGGGAACGGG-ATG-CATTTCACTCCCCTATCTAGCCTT-TCAGGGTACCTGTTATTCGTGTT-ACTGG-TGGCCCAGCTGCACCGCTT-T-ACCATAG-TTGACTTG-------TTATCTCGTTCTTCT-------------------CTTTGTA-------C-T-----G-TTTGT---------TGGA--GCA--TATGGT--GGAGCTTACACGC-GCTG-AATCAATGGAA--TCTTTTC-ATTGGCTGAAAACTTG-CTGTGATTGA-----CAGC-TGGCGATAC
gi|4 : ggtagtagcacgTACAAGTGAT-AAGTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT--------------TCAGTGTTGCACGCGTACGTGCCACGTGCCACGATAAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGT-C-TA----AAAAGGTG---AAAGTTCAAGGGGGC-AGGAAGGC-TGGTTTG-AAC-ATAAGAAA--ATATA------ATTT-TAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GGTTTATTCCGATATCTC-------AATAT--TCCCACGTTG--AGTT---A--------------C-GTAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGATACCTGTTATCCGTGTT-AGAGA-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T---------------------------------CTTTGC--------T-C-----G-TTTGT---------CGGA--GCA--GATGGC--ATAGCTTACACGC-ACTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CCGTGATTGA-----CAGC-TGGCGATACgtt
gi|5 : TATATTA-GTAAGCACATAAT-CA------TTCGAACG-GT--AATTCCCTTGAAA--------ATATTTTGC-TGCA-TAGTAC----TTTCAAGATGA-CCCAGCT-------T------TAAGTGATGCACGCGTACGTGCCACG--------------------ACAGTG---GAGGGAATTA-C-GCAGG--G-TGCAT-C-TA----AAAAGGTGT-GAAAGTTCAAGGGGGC-AGGAAGGC-TG-TTTG-AACCATAAGAAA--ATATACAATGTACTTGTAAATAGATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-CCGATTTATCCCGATCTCTC-------AATATATCCCCACGTTG---GTT---A--------------C-GTAGAGCTTGA-TCCAT---T-CGCC------TACATT-CTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTG-T-AAAGGCTGTCCC-ACTGCACCGCTT-C-ACCACAGTTTGACTTGTATTTAAT-------------CGCGTA--------------CTTTGC--------T-T-----GTTTTGTCC-------CGGAGGGCA---ACGGCA-GAAGCTTACACGCTGCTGAAATAAATGGAA--TTTTTTC-ATTGGTTG-AAATATA-CTGTGATTGAACAGCTAGC-TGGCGATA
gi|6 : GAAATGCTT-A-GATTTGTTCCTGTCCCTC-------AATAT--CTCCACGTTG--AGTTTGTAGGCTGGTCTTC---C-GCAGAGCTCGA-TCCATCGAT-CGCC------TACATTTCTCGATATT-T-TTGGCCGG-TTTTGGGAATAGG-ATG-AACTTAACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCGGTGTT-AAAGG-TACCCCAACTGCACCGCTT-T-ACCATAG-CTGCCTTG-------T-------------CTAGTTGTAATCACGTACCTCTTTGT--------TATGTACAG-TCTGTAATGTTTGTCGGA--GCA--GTCGAT---TAGCTTGTACGC-GCGG-AATAAATGAAA--CTTTTTC-ATTGGCTacg
gi|7 : agaaacaacatataacaaacttcaaactttaccttagtgcaaacacg-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGACTGG-TTTAGGTAACGGG-ATG-AATTTCACTCCCCCATTTAGCCTT-TCAGGGCACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGTTT-C-ACCACAG-TTGACTTG-------T-------------A-------------------TATTAC--------T-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTG-TTGA-----CAGC-TGGCGATAC
gi|9 : GGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-A---G-TGTCCCAACTGCACCACTT-C-ACCACAG-TTGA--------------------------------------------------C--------T-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGCATACACGC-GCTG-AGTAAATGAAA---TTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-AGGCGATACg
blockSeqs : A AA TT . A A A G AGCTTT AA A CT TTCGAAC C . AAGG T A A TCAGTCAA TGCCACGATAAAA N ATC N CT TGT TCT GTCT TG . T . C TT CAAT T G T G TAA G CC AG T AGTCTCG AT . GGTAGGCTGGTCTTC T . CGAT TACCGG A G . TA . A C . G C C . T TCTAGTTGTAATCACGTACCTCTTTGTTATGTACA T AATGTTTGT GG GCG T A T A T A C ACAGC T
blockSeqs : G A . . . . . . . A . . . . . . . . C CACGATT NNNNNNNNNNNN A . A N NN NN . T . . . . . CAAT A A . G TAA G A AT G . . . TGTAGGCTGGTCTTC . . T . . . . AA . . . . C . . . . TTATCTCGTTCTTCTCTTTGTACT . CC . C T . . A T . . . .
blockSeqs : . . . . . . . A . . . . . . . . N N ACAGAAA A . A C TG C . T . . . . . TAA T G . . T G C GT G . . . AG . . T . . . . AA . . . . C . . . . TATTTAATCGCTACCTTTGCTT . . . T C . . . T . . . .
blockSeqs : . . . . . . A . . . . . . . . C T . . . . C G C . . . . . . . . . . . . . . C AT G . . . A . . T . . . . TT . . . . G . . . . TATTTAATCGCGTACTTTGCTT . . . T T . . . T . . . .
blockSeqs : . . . . . . C . . C AT T . . . A . . T . . . . TA . . . . C . . . . TATCAATCGCGTATCTAATT . . . G T . . . T . . . .
blockSeqs : A A . . . . . . . T . . . . A . . . . G . . . . TATATTACTT . . . G C . . . C . . . .
blockSeqs : . . . . . . . . . . A . . . . TAATCTCGT . . . C C . . . T . . . .
blockSeqs : . . A . . . . TCTTTGCTC . . . C T . . . . . . . .
blockSeqs : . G . . . . CTT . . . . T . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : A* ACGAAAA******* C** TG** TC* CAA* T**** C** AT ** AGGTTC************ T**** ** T**
originalCons : TGCAAGTGAT-A-GTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------N------TCAGTGTTGCACGCGTACGTGCCACGT-CCACGACGAAA-TCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGC-AGGAAGGC-TGGTTTG-AAC-ATAAGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTG--AGTT---AG-------------C-GCAGAGCTTGA-TCCAT---T-CGCC------TACATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T-------------C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
finalCons : TGCAAGTGAT-A-GTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------N------TCAGTGTTGCACGCGTACGTGCCACGACGAAAA-------TCATCGACAGTG---GAGGGAATTAC--GCAGGTG--TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGC-AGGAAGGC-TGGTTTG-AAC-ATAAGAAA--ATATACAA-GTACTTGTAAA-ATATTTGAACACAAGGCAT----CAACTTGAAATGCTTC--GATTTATTCCGGTCTCTC-------AATAT--CCCCACGTTG--AGTTAGGTTC------------C-GCAGAGCTTGA-TCCATT----CGCC------TACATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T-------------C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAAT--TTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TACCTTCGTACATACGTATAAATGTTTGACCTTTCCTCTTTCTCTCAGAATTTTCTCATTTAGTTGACTGTGTGGCCGTCCATGGAGTTTTATATATTTGCTCGCTTTGTCGAGATTTCCTCCTGGTTTCGGAAATGGCACAAATACAATAACCCCTCAAGTCGATCTGGATATCGGCTGTCTGTATTGCATGTTCCCCAACAACAACGCCTCACCAT
Unaligned ( gi|17 ): GTAGTAGCACGCTTTAGGGTCTGTAAATA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 11 222222 11 2222222 1111 55555555555555 2222222222 111 1 1 11 1 1 1 2222 11 11 11 1 444444 111 2222222 11111 888888888888888888888 111111 11111111111111111111111111111111111111111111111111111111111111 222222222 111
lowQualScore : 2 777 33 0 8 0 8 8 8 8 333333 88 8 11 1111111 6 6 4444 6 8 5 77777777777777 8 7777777777 3 777 3 0 0 33 0 5 0 1111 33 8 8 0 8 8 0 11 0 3 77 1 3 999 0 0 444444 0 222 2 0 66 66 3333333 66 888 00000 333333333333333333333 4 777 4 222222 4 4 4 44 4 4 4 3 5 3 3 3 0 3 66666666666666666666666666666666666666666666666666666666666666 4 111111111 55 000 4 99 3 7 777 4 4 99999 3
lowQualScore : . ... .. . . . . . . . ...... .. . .. ....... . . .... . . . .............. . .......... . ... . . . .. . . . .... .. . . . . . . .. . . .. . . ... . . ...... . ... . . .. .. ....... .. ... ..... ..................... . ... . ...... . . . .. . . . . . . . . . . .............................................................. . ......... .. ... . .. . . ... . . ..... .
lowQualScore : 0 777 88 8 0 8 0 0 0 0 000000 88 0 00 7777777 7 7 2222 7 0 0 88888888888888 0 2222222222 2 555 2 0 0 22 0 5 0 2222 22 0 0 8 0 0 8 00 8 2 00 0 2 444 8 0 888888 7 555 0 9 88 99 1111111 99 888 99999 444444444444444444444 4 888 4 888888 4 4 4 44 4 4 0 3 2 3 3 3 4 6 33333333333333333333333333333333333333333333333333333333333333 0 555555555 55 444 6 55 6 3 888 4 4 11111 6
consensus : TGCAAGTGAT-A-GTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------T------TCAGTGTTGCACGCGTAC-GTGCCACG----ACGA--AAATCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGCA-GGAAGGC-TGGTTTGAA-C-ATAAGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GATTTATTCCGGT--CTCTC-------AATAT--CCCCAC---GTTG--A--GT---T---AGG---------TCCGCAGAGCTTGA-TCCAT---T-CGCCTAC------ATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T------------C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
Reference ( family-5842 ) : TGCAAGTGAT-A-GTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT-------N------TCAGTGTTGCACGCGTAC-GTGCCACG----ACGA--AAATCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGCA-GGAAGGC-TGGTTTGAA-C-ATAAGAAA--ATATACAA-GTACTTGTAAA-ATATTTGAACACAAGGCA--T--CAACTTGAAATGCTT-C-GATTTATTCCGGT--CTCTC-------AATAT--CCCCAC---GTTG--A--GT---T---AGG------T--TCCGCAGAGCTTGA-TCCAT---T-CGCCTAC------ATTTCTCCAGATT-T-GTGGCTGG-TTNAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T------------C-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCA--NACGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-TGGCGATAC
gi|1 : TGCAA-TGATTA-GCTGAATTTTCAACTTT--ATACTTTATATTAAGTA-GCAC-TA-T-CA------TTCG--CG-GT--AAATTCCTTGAAAC-------ATATTTTGC-TGCAATAGTAC----TT-CAAGATGA-CC-AGCT-------T------TTAGTGTTGCACGCGTACCGT-CCACG----ACAA--AAATCATCGACAGTG---GAGGGAATTAAC-GCAGGTTG-TGCGTTC-TA----AAAAGGTGT-GAAAGTTCAAGGGGGCAAGGAAGGC-TGGTTTGAAAC-ATAAGAAA--AT-TACAT-GTACTTGTAAA--TATTTGA-CACAAGGCAATTAACAACTTGAAATGCTTAC-G-TTTATTCCGAT--CTCTC-------AATAA--TCCCAC---GTTGAAA--GT---T---AA------------CGTAGAGCTTGATTCCAT---TCCGCCTAC------ATTTCTCCAGATT-T-GT-GCTGGTTTAAGGAAACGGGAATG-AATTTCAAT-CCCCATCTAGCCTT-TCAGGGTACCTGTTATCCTTGTTAAGAGG-TGTCCCAACTGCACCGCTT-CAACCA-AG-TTGACTTGTATTTAAT------------CGCGTA--------------CTTTGCTTG-----T-T-----G-TTTGT---------CGGA--GCA--GA-GGCAAGAGGCTTACACGC-GCTG-AATAAATGGAATTTTTTTTC-ATGGCCTGAAAATATA-CTGTGA-TGA-----CAGC-TGGCG
gi|10 : attnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTATCCGTGTT-AGAGG-TGTCCCAACTGCATCGTTT-C-ACCACAG-TTGACTTGTA-----T------------C-------------------AATCGCGTATCTAAT-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGGTTACACGC-GCTG-AATAAATGGAA--TTTTTTta
gi|11 : TT-A-GAGTTGTTCCTGT--CCCTC-------AATAT--CTCCAG---GTTG--A--GTTGGT---AGGCTGGTCT--TCCGCAGAGCTGGA-TCCA----T-CGCCTAC------ATTTATCGAGTTT-T-GTGGCCGG-TT
gi|12 : TACCTGTTATTCGTGTT-ACTGG-TGCCCCAACTGCACCGCTT-T-ACCATAG-TTGACTTG-------T------------A-------------------ATCT-C--------G-T-----A-TTT-T---------CGGA--GCA--TATGGC--GGAGCTTACACGC-GCTG-A
gi|13 : CCCCCATCTAGCCTT-TCAGGGTACCTATTATCGGTGTT-ACAGG-TACCCCAACTGCACCGCTT-T-ACCATAT-CTGCCTTG-------T------------C-------------------
gi|14 : CCCTTGAAAC-------ATATTTTGC-TGCA-TAGTACAAGGTT-CAAGATGA-CCAAGCTTCAGTCAA------TCAGTGTTGCACGCGTAC-GTGCtagttgtaatcacgtacct
gi|15 : CGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGG-TGAAAATGTA-CCGTGATTGA-----CAGC-TGG
gi|16 : GGCTGAAAATATG-CTGTGATTGA-----CAGC-TGGCGATAC
gi|18 : TGATTGA-----CAGC-TGGCGATACgt
gi|19 : TGATTGA-----CAGC-TGGCGATACgttaatt
gi|2 : TGCAAATGAT-A-GTTGAATTTTCAACTTTTTATACTTTATATTA-G-A-GCAC-TA-T-CA------TTCGA-CGAGT--AATTCCATTGAAAC-------ATATTTTGCCTGCA--AGTAC----TT-CAAGTTGAACCCAGTT-------CACGATTTCAGTGTTGCACGCGTAC-GTGCCACG----ACAG--AAATCATCGAC-GCGATCGACAGA--CG-CTGCAGGT-GTTGCGTTCTTAGTCTAAAAAGTGTGGAAGGTTCAAGGGGGCA-GAAAGGCTTGGTTTGAA-C-AT-AGAAA--ATATACAATGTACTTGTAAA-ATATTTGAACACAA-GCA--T---AACTTGAAAT-CTT-C-GA-TTATTCC-AT--CTCTCAGTCTCGAATAT--CCCCAC---GTT---A--GT---T---AG------------CGCAGAGCTTGA-TCCAT---T-CGCCTAC------ATTTCTCCAGATTATGGTGGCTGG-TTA--GAAACGGG-ATGAAATTTCACTCCCCCATCTAGCTTTCTCAGGGTA-CTG-TATCCATGTT-AGAGC-GGTCCCAACTGCACCGCTTCC-ACCACAG-TTGACTTG-------TATTTAATCGCTAC-------------------CTTTGC--------T-T-----G-TTTGT---------CGGA--GCAGCGACGGC--AGAGCTTACACGC-GCTGAAATAAATGGAA----TTTTCAATTGGCTGAAAATATACCTGTGAGTGA-----CAGCTTGGCGATACgttaatt
gi|3 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTT--AGGGTCTGTA--A-GTA-GCAC-TA-TGCAAGCTTTTTTAA-AA-ATCTAATTCGCTTCAAACTTCGAACATATTTTGC-CGCA-TAGTTT----TT-CAA
gi|3 : ggtagtagcacgGGGGGTA-GGAAGGC-TGGT--GAA-C-ATAGTGTATTGTATATAA-GAACATATAAA-AGGTTTGAACACAA---------------------CTC-C-GATTTATTCCGGT--CTCTC-------AAGAT--CTCCAC---GTTG--A--GT---T----------------CTGCAGAGTTTAA-CCCAT---T--GCCTACCGGTACAATTCTCCAGATT-T-GTGGCTGG-TTTAGGGAACGGG-ATG-CATTTCACTCCCCTATCTAGCCTT-TCAGGGTACCTGTTATTCGTGTT-ACTGG-TGGCCCAGCTGCACCGCTT-T-ACCATAG-TTGACTTG-------T------------TATCTCGTTCTTCT------CTTTGTA-------C-T-----G-TTTGT---------TGGA--GCA--TATGGT--GGAGCTTACACGC-GCTG-AATCAATGGAA--TCTTTTC-ATTGGCTGAAAACTTG-CTGTGATTGA-----CAGC-TGGCGATACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtgggggtaggaaggctggtgaacatagtgtattgtatataagaacatataaaaggtttgaacacaactccgatttattccggtctctcaagatctccacgttgagttctgcagagtttaacccattgcctaccggtacaattctccagatttgtggctggtttagggaacgggatgcatttcactcccctatctagcctttcagggtacctgttattcgtgttactggtggcccagctgcaccgctttaccatagttgacttgttatctcgttcttctctttgtactgtttgttggagcatatggtggagcttacacgcgctgaatcaatggaatcttttcattggctgaaaacttgctgtgattgacagctggcgatacgtt
gi|4 : ggtagtagcacgctttagggtctgtaagtagcactatgcaagcttttttaaaaatctaattcgcttcaaacttcgaacatattttgccgcatagtttttcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtTACAAGTGAT-AAGTTGAATTTTCAACTTT--ATACTTTATATTA-GTA-GCAC-TA-T-CA------TTCGA-CG-GT--AATTCCCTTGAAAC-------ATATTTTGC-TGCA-TAGTAC----TT-CAAGATGA-CCCAGCT--------------TCAGTGTTGCACGCGTAC-GTGCCACGTGCCACGATAAAATCATCGACAGTG---GAGGGAATTA-C-GCAGGT-G-TGCGT-C-TA----AAAAGGTG---AAAGTTCAAGGGGGCA-GGAAGGC-TGGTTTGAA-C-ATAAGAAA--ATATA------ATTT-TAAA-ATATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-C-GGTTTATTCCGAT--ATCTC-------AATAT--TCCCAC---GTTG--A--GT---T---A-------------CGTAGAGCTTGA-TCCAT---T-CGCCTAC------ATTTCTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGATACCTGTTATCCGTGTT-AGAGA-TGTCCCAACTGCACCGCTT-C-ACCACAG-TTGACTTG-------T--------------------------------CTTTGC--------T-C-----G-TTTGT---------CGGA--GCA--GATGGC--ATAGCTTACACGC-ACTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CCGTGATTGA-----CAGC-TGGCGATACgtt
gi|5 : TATATTA-GTAAGCACATAAT-CA------TTCGAACG-GT--AATTCCCTTGAAA--------ATATTTTGC-TGCA-TAGTAC----TTTCAAGATGA-CCCAGCT-------T------TAAGTGATGCACGCGTAC-GTGCCACG----AC---------------AGTG---GAGGGAATTA-C-GCAGG--G-TGCAT-C-TA----AAAAGGTGT-GAAAGTTCAAGGGGGCA-GGAAGGC-TG-TTTGAA-CCATAAGAAA--ATATACAATGTACTTGTAAATAGATTTGAACACAAGGCA--TAACAACTTGAAATGCTT-CCGATTTATCCCGAT--CTCTC-------AATATATCCCCAC---GTTG-----GT---T---A-------------CGTAGAGCTTGA-TCCAT---T-CGCCTAC------ATT-CTCCAGATT-T-GTGGCTGG-TTAAGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTG-T-AAAGGCTGTCCC-ACTGCACCGCTT-C-ACCACAGTTTGACTTGTATTTAAT------------CGCGTA--------------CTTTGC--------T-T-----GTTTTGTCC-------CGGAGGGCA---ACGGCA-GAAGCTTACACGCTGCTGAAATAAATGGAA--TTTTTTC-ATTGGTTG-AAATATA-CTGTGATTGAACAGCTAGC-TGGCGATA
gi|6 : GAAATGCTT-A-GATTTGTTCCTGT--CCCTC-------AATAT--CTCCAC---GTTG--A--GT---TTGTAGGCTGGTCT--TCCGCAGAGCTCGA-TCCATCGAT-CGCCTAC------ATTTCTCGATATT-T-TTGGCCGG-TTTTGGGAATAGG-ATG-AACTTAACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCGGTGTT-AAAGG-TACCCCAACTGCACCGCTT-T-ACCATAG-CTGCCTTG-------T------------CTAGTTGTAATCACGTACCTCTTTGT--------TATGTACAG-TCTGTAATGTTTGTCGGA--GCA--GTCGAT---TAGCTTGTACGC-GCGG-AATAAATGAAA--CTTTTTC-ATTGGCTacg
gi|7 : agaaacaacatataacaaacttcaaactttaccttagtgcaaacacg-TCCAT---T-CGCCTAC------ATTTCTCCAGATT-T-GTGACTGG-TTTAGGTAACGGG-ATG-AATTTCACTCCCCCATTTAGCCTT-TCAGGGCACCTGTTATCCGTGTT-AGAGG-TGTCCCAACTGCACCGTTT-C-ACCACAG-TTGACTTG-------T------------A-------------------TATTAC--------T-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGCTTACACGC-GCTG-AATAAATGGAA--TTTTTTC-ATTGGCTGAAAATATA-CTGTG-TTGA-----CAGC-TGGCGATAC
gi|8 : AAATGTTT---GACCT-TTCCTCTTTCTCTCAG-----AATTT--TCTCATTTAGTTG--ACTGT---G---TGG------CCGTCCATGGAGTTTTA-TATAT---T-TGCTCGC-------TTTGTCGAGATT-T-CCTCCTGG-TTTCGGAAATGGC-ACA-AA-TACAATAACCCCTCAAGTCGA-TCTGGATATCGGCTGTCTGTATT-GCATG-TTCCCCAACAACAACGCCT-C-ACCAg
gi|9 : taccttcgtacatacgtatGGAAACGGG-ATG-AATTTCACTCCCCCATCTAGCCTT-TCAGGGTACCTGTTATCCGTGTT-A---G-TGTCCCAACTGCACCACTT-C-ACCACAG-TTGA-------------------------------------------------C--------T-T-----G-TTTGT---------CGGA--GCA--CATGGC--GGAGCATACACGC-GCTG-AGTAAATGAAA---TTTTTC-ATTGGCTGAAAATATA-CTGTGATTGA-----CAGC-AGGCGATACt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTAGTAGCACGCTTTAGGGTCTGTAAATA