lowQualScore : 1111111111111111111111111111 111111111111111111 1111111111111111111111111
lowQualScore : 4 111 11 8888888888888888888888888888888888888888888888888 111 444444444444444444 777777777777777777777777777777777 1 2222 11 44444444444444444 1 333 2222 11 22222 11111111 11 111 1 1 0000000000000000000000000000 222222222222 1111 2222222 111 3333333 1 1 1 22222222 1 33333333 444444444444444 1 66666666666666666666666666666666666666666666666666666666666 1111 222222 11111 1111 44444444 22 111 11 1 11111 22222 22222 1111 11 111 22222 2222222222 1 1 11 222222222 1 1 11 2222 22 11 22222222222222 22 11111 11111 11 11111 111 1111 1 11 222222 1 1 5555555555555 1 1 1 11 111111 1 44444444 000000000000000000 11 11 444 11 1 22222 333333333 11 11 1 6666666666666666666666666 22 33 111 11 11 111 11 1 8888888888888888888888 2222222222 11 1 11 111 1111 111 222222 22 1 2 2222 11 11 11 11 2 1 0000000000000000000000000 2 2 22 1 333333333 2 1 1 22222 111 1111111 1 222 222222222 3333333333333333333 22222222222222 111 999999999999999 11 33333333333 11 4444444444444 333333333333333333333333 222 1111111 2222222222222222 1
lowQualScore : 0 777 88 0000000000000000000000000000000000000000000000000 444 8 555 111111111111111111 2 6 99 3 333333333333333333333333333333333 1 0 1111 22 44444444444444444 3 0 444 3 1111 33 77777 66666666 00 666 0 0 3 4444444444444444444444444444 444444444444 4444 6666666 8 5 5 0 6 3 3 777 5555555 0 0 0 3 00000000 2 0 66666666 0 111111111111111 2 0 8 6 11111111111111111111111111111111111111111111111111111111111 8 8 3 1 4444 777777 66666 5555 55555555 33 0 33 8 333 3 5 11 55 6 8 99999 88888 8 22 00000 8 8 0 7777 222 33 6 111 22222 3 4444444444 0 0 8 8 11 777777777 44 0 4 0 11 3 6 3 5 6 5 6 3333 5 99 22 44 88888888888888 99 99 6 44 00000 1 55555 00 33333 111 7777 33 0 99 22 000000 0 0 2 3333333333333 0 3 0 0 33 666666 0 0 66666666 000000000000000000 3 3 33 33 6 555 33 0 2 22222 3 0 666666666 77 88 0 7777777777777777777777777 00 6 999 11 777 88 33 3 3 777 1 33 0 1111111111111111111111 8 8 6 6 6 3 6 4444444444 33 55 55 5 5 5 5 8 5 11 666 99 8 7777 444 8 000000 3 0 8 11 3 6 5 3 3 8888 88 88 88 88 7 0 3 5 2222222222222222222222222 0 0 77 55 4 5 888888888 0 5 2 1 8 00000 88 6 444 3 3333333 3 5 77777 5 77 5 000 33 333333333 0 66 4444444444444444444 99999999999999 66 55 3 777 666 5 1 777777777777777 33 1 66 5 5 44444444444 2 5 66 0 6 6 66 4 88 2222222222222 4 8888 444444444444444444444444 4 0 777 999 5 5555555 6666666666666666 66 66 0 5 5 66 7 66 5 2
lowQualScore : . ... .. ................................................. ... . ... .................. . . .. . ................................. . . .... .. ................. . . ... . .... .. ..... ........ .. ... . . . ............................ ............ .... ....... . . . . . . . ... ....... . . . . ........ . . ........ . ............... . . . . ........................................................... . . . . .... ...... ..... .... ........ .. . .. . ... . . .. .. . . ..... ..... . .. ..... . . . .... ... .. . ... ..... . .......... . . . . .. ......... .. . . . .. . . . . . . . .... . .. .. .. .............. .. .. . .. ..... . ..... .. ..... ... .... .. . .. .. ...... . . . ............. . . . . .. ...... . . ........ .................. . . .. .. . ... .. . . ..... . . ......... .. .. . ......................... .. . ... .. ... .. .. . . ... . .. . ...................... . . . . . . . .......... .. .. .. . . . . . . .. ... .. . .... ... . ...... . . . .. . . . . . .... .. .. .. .. . . . . ......................... . . .. .. . . ......... . . . . . ..... .. . ... . ....... . . ..... . .. . ... .. ......... . .. ................... .............. .. .. . ... ... . . ............... .. . .. . . ........... . . .. . . . .. . .. ............. . .... ........................ . . ... ... . ....... ................ .. .. . . . .. . .. . .
lowQualScore : 0 777 33 1111111111111111111111111111111111111111111111111 000 0 666 888888888888888888 2 7 22 2 444444444444444444444444444444444 4 8 0000 55 55555555555555555 2 0 555 2 0000 88 77777 77777777 22 888 0 0 2 8888888888888888888888888888 888888888888 8888 0000000 0 0 0 8 5 2 2 555 8888888 0 0 0 2 88888888 0 0 22222222 2 222222222222222 5 0 0 4 66666666666666666666666666666666666666666666666666666666666 0 0 2 7 2222 777777 77777 7777 77777777 55 8 66 0 000 2 0 66 88 0 0 22222 88888 0 22 00000 0 0 8 0000 444 88 5 000 55555 5 8888888888 0 0 0 0 00 888888888 66 0 4 0 00 8 7 0 7 7 7 7 3333 2 22 55 33 88888888888888 22 22 7 22 77777 0 22222 33 77777 777 8888 55 0 55 55 888888 0 0 0 2222222222222 0 2 0 0 88 555555 8 0 22222222 000000000000000000 2 2 88 88 0 000 88 0 5 88888 2 2 444444444 33 33 0 1111111111111111111111111 00 7 777 00 777 33 88 2 0 555 2 88 0 8888888888888888888888 0 0 7 7 7 5 7 2222222222 88 66 00 7 7 7 7 0 0 00 222 44 0 0000 000 0 888888 8 8 0 22 2 7 0 7 3 3333 33 33 33 00 3 7 3 5 0000000000000000000000000 0 0 55 55 0 0 000000000 0 5 0 0 3 00000 88 7 888 2 5555555 8 0 99999 0 22 0 000 77 666666666 1 11 1111111111111111111 66666666666666 99 66 1 000 222 0 7 111111111111111 66 4 99 0 0 55555555555 0 0 99 6 7 7 11 0 11 0000000000000 0 2222 777777777777777777777777 0 1 111 444 0 8888888 4444444444444444 11 99 0 0 0 99 1 99 7 5
consensus : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTC-TTCTCAACTCTTGGG-T-GTTTG--ATTGGGGAGGGGGG-------------TGTTTTTTAA--GTCTAG--TCTT-TATTCTTTTGTT---TG-TCGCATTCGTTTA---------------T--TNAT-TT--TAGTATCTACT--T-------------CAGT-AGCT----G--TCAATGCGCA-GT-GATTAG-GCCTCTAG--TAATTTGTACA--TGTAAATATAAC-GTT-CCTTAGCATATCA-NA-AAA--TGT-A---CTCGTATGCAT-TC-AATG-CANT-CTAATA-CTT-TCTGAGTTTA--------------T-------------TTTCAAA-TTCAG-----TTTTGAA---TA-------TCATTA-TGTTGCATAATTGTGTTGATTG---TATCACAAN-A-ATAGT-AA-GTTG-TTTAGT---TT-A-AAAGCCAATA-TT--------TCATCTAATGTA-CGTGTATTTC--AAAACGTA-AG-TACCANTG--A-TA--A-ATTCACCGTC-GC---GTCAACGTA-ACGTCAAATT-G--TCT--CT--TTTT-A-CGTCTGTG----ACAT-GACCGTGTTG-----ACATTCGN---TTT-------TTTGTTGCAATTTTTGTAAT-TG-T-TAGAGTGNATATATTTTGAA-TTAAAGA-AA-ATAT---TTTTTCA----AG-ACAAG-----C-AC-ATTTAAG----AAAAATATTTAGTTGTCTTNA-T-TTGTGTT----AATNGAATA----GC-TN-TA-CG-GACGATTGG-TTT-TAAG--ATAGTAATT----CAATTTCNAGTNACGTATTACA--TTTAC-GGCACG-GT-GTGAC-ATTC----ANT--GTTGA--CTCC-GTAG-ATTGNCTNA---AAAA--CC-G-ACGAATT-TT-NACTGAATCAACTC----AAATTTCCTGTCGCGA-T---GA---AATTTGGATTTGCA-CATTCCGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-ATC--GATTCA-ATGC-------AATATCGTA-GAATC-TATCTGT--GACGTTTTGAACGTC--AAAT--CATCGCTG-TGAC--ACAT-AGGTCTN-CATTGC-ATATCA--TGTAAC-NTTGAC--TATAA-ACTACATGTT-A-TGTCAAAA-----TTCAG-AAATCGTTC-ACAAGTAATCCAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAANCC---GTTAACTCAAT--ATAACC-CAA------AACC---TA--G----TTAC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTT---GAA----ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACGTA-TCAGG-CACGTA--TGATAC-AG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAC-CACTTATCGA-ATATNAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-NCACACATATCC-AATGTATCTACAAACGTACGCAATGGCCTAATGCCTATTTCCACACGTTAAGGTTTGATCTACACCGCCCAATTCTNNCACTCTGNGTCAGCGTCTACNGCATACNNACTAAGATGACATCACAATTTTAATAATGTATATCATCAACATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA--T--NAGTTTT-AAGAAA-GC-TA-TNAA-CATTTTGGTAAAG-TGTGTGTGTGACACT-------GTCGTT--A--CCGGT------------CTACA---T-GC-------AATATTTACGT--AAATATCCAAATAT--TCAAGN-CAATACANGT-A----------AT--TTCG--C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-T-C--AN-A--TGAT-ATG---TAACTTTC---------C---TATA-TTA---AAGTGT-TTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
Reference ( gi|1 ) : GATCCACTATGATTTGCGGACTTTTTTTTTTCTTTCTCAACTCTTGGG-T-GTTTG--ATTGGGGAGGGGGG-------------TGTTTTTT----GTCTAG--TCTT-T----TTTTGTT---TG-TTGCATTCGTTTA---------------T--TTAT-TT--TAGTATCTACT--T-------------TAGT-AGCT----G--TCAAAGTGCA-GT-GATTAG-GCCTCTAG--TAATT-GTACA--TGTAAATATAAC-ATTGCTTTAGCATATCA-AA-AAA--TGT-A---CTTGTATGCATATCGAATG-CATT-CTAATA-CTT-TCTAAGTTTA--------------T-------------TTTTAAA-TTCAG-----TTTTGAA---TA-------TCATTA-TGTTGCATAATTGTGTTGATTG---TATCACAAG-A-AT-GT-AA-GTTG-TTTAGT---TT-A-AAAGCCGATA-TT--------TCATCTAATGTG-CG-GTATTTT--AAAACGTA-AG-TACCACTG--AGTA--A-ATTCACCGTC-AC---GTCAACGTA-ACGTAAAAT--G--TCT--TT--TTTT-A-CGTCTGTG----ACAT-GACCGTGTTG-----ACATTCAT---TTTG------TTTGTTACAATTTTTGTAAT-TG-T-TAGAGTGGATATATTTTGAA-CTAAAGA-AA-ATAC---TTTTTCA----TG-ACAAG-----C-AC-ATTTAAG----AAAAATATCTAGTTGTCTTCA-T-TTGTGTT----AATTGAATA----GC-TG-TA-CG-GACGATTGG-TTT-TAAG--ATAGTGGCT----CAATTTCCAGTAAGGTATTACA--TTTAC-GGCACG-GT-GTGAC-ATTC----AGT--GTTGA--CTCC-GTAG-ATAGACCAA---AAAA--CC-G-ATTAATT-CT-AACTGAATCAATTT----AAATTTCCTGTCGCGA-T---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------CTAC-ATATATTACA-TTT-TTAAA--TGAC-ATT--GATTCA-ATG--------AATATCGTATAAATT-TATC--T--GACGTTTTGAACGTC--AAAT--CGTCAC---TGAC--ACAT-AGGTCTT-CATTGC-ATATCA-TTGTAAC-TTTGAC--TATAA-ACTACATGTC-A-TATCAAAAGTCTGTTCATAAAATCGTTC-ACAAGTAATCTAAAAATCCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CAA------AACC---T--------TTAC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTT---AAA----ACGTTGTGACACACAATCTCATTAATATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CAAGTA--TGATGA-AG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAG-CATTTATCGACATATGAATTCAAATTTTGGATA----AATT--ATT--CAG--AATTC-TCACACATGTCCGAATGTATCTACAA---TGCGTA-----CTAGTA-----TTCCACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATACGCACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA--T--AAGTTAT-AAGAAA-GC-TA-TCAA-CATTTTGGTAAAG-TGTGTGTGTGACACC-------GTCGTT--A--CCGGT------------CTACA---C-GC-------AATATTTACGT--AAATATCCGAACAT--TCAAGG-CAATACA---------------AT--TTCG--C-ATT-TTAAACA-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATG-ACC--T-C--AC-A--TGAT-ATG---CAGCTTTC---------C---TATA-TTG---AAGTGT-TTTTATTCA-TGTAAAT--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAGCAGC--GTG-CGCGGC
gi|17 : TTTTTTTTC-TTCTCAACTCTTGGGTT-GGTTG--ATTGGGGAGGAGGGTTGTGTGTTTGGTTGTTTTTTA---GTCTAGT-TCTT-TATTCTTTTATT---TG-TTGCA-CCATTTA---------------T--TAAT-TT--TAGTATCTAC---T-------------TAGTCAACTTAACG--TCAA
gi|7 : TCTCAACTCTTGGG-TTGTTTG--ATTGGGGAGGGGGG-------------TGTTTGTT-----TTTAG--TC--------TTTTGTT---TG-TTGCATT-GTTTA---------------T--TTAT-TT--T
gi|12 : TTGGG-T-TTTTACAGTTTGGGA----------------------TTTTTAAAAGTCTATATTCTT-TATTCTTTAGTT---TA-TCGCAT-CGTTTA---------------T--TCAT-TT--TAGTATTTACT--TATTCGTATCCGATCAGT-AGCT----G--TCAATGTGCAAGT-GATTAG-GCCTCTAG--TAATTTGTACA--TGCAAATATAAC-GTCTCCT-AGCATATCA-TATAAA--TGT-A---CTCGTATGCATATTGAATG-CATT-CAAATA-CTT-TCTAAGTTTATCTGAATACGAAATT-------------TTTCAAA-TTCAG-----TTTTGAA---TA-------CCATTA-TGTTGCATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaaattcagttttgaatatcattatgttgcataattgtgttgattgtatcacaagaatagtaagttgtttagtttaaaagccgatatttcatctaatgtgcgagtatttttaaaaacgtaagtaccactgagtataaattcaccgtcacgtcaacgtaacgtcaaattagtctctttttttacgtctgtgacatgacgtgttgacattcaatttttgttacaattttgtatttgttacagtggatatattttgaatcagagaaaatcttttttcaagacaagcacatttaagaaaaata
gi|3 : -------------TGTTTTTTTA--GT-TGG--TTTTCT----TTTTGTT---TGATTGCATTCGTTTAAAATAAAATAAGTCAT--TTAC-TTATTCATATCCGAT--C--------------AGT-AGC-----GATTTAATGCGCA-TTTGCTTGGAGCCTCT-----------T-----TGTAAATATAAC-GTT--CTTAACATATGA-AA-ATA--TAT-ATTACTTGTATGTATCTCCAATA-CAG--CTAATA-CTT-CATGAGTTTA--------------TCGAATACGAAATATTTTAAAATTCAA-----ATTTGA----TA-------TCATTA-T-TTG-ATAATTGT-TTAATTG---CATCACAC--A-ATAGT-AA-GTCT-TTTAGT---TT-TTAAAGTCAGTA-TT--------TCATCTAACATAACGTGTATT-----AAATGTA-AGATACCAGTA----CA--ATATTCACC--------------CGTA-ACGTCAAATA-G--TTT--CTCATTTTGA-C-TC-GTG----ACCA-GAACGTGTTG-----ACATCTGT---TTT---------TGCTGGAATTTT-GTAATGTG-T-AGGAGTGCATATATTTTGAAGTTAAAGAGAA-AAAT---CTTTTCA----AG-ACATG-----C-AC-ATTTA-G----AAAAATCTTTAGTTGTCTTGAAT-TTGTGTA----TATAGAATT----GC-TT-TA-TG-GACGATTGG-TTT-TAAG--ATAGTTATT----CA-TTTTCAGCAACGTATTACA--TT-AC-G-CACACGT-GTGAC-ATTCCC--GGTCTGTTGAG-CTCCCGTAG-ATTGTCTAA---AAAA--C--G-AAAAATT-TT-AACTGAATCTACTC----AAATTTCCTGTCATGAAT---GA---AATTTG-ATTTGCA-CATTCTCTAAATG-ATA--TT--AATGCGTGC-ATA------------TTAC-ATATA-TACATTTT-TTGAA--TTAC-A-T--GACTCA-ATG--------AATATCGTA-A-----TATC--TGAGACGTTTTGAACG-CAAAAAT--TATCACTG-TGAC--ACATAAGGTATTACATTAC-AAATTATTTGTAAC-GTTGAC--TATAA-ACTACATGTT-GCTGTTAAAA-----TTC------TTGTT---CAAGTAATCCAAAAA-CCTATTTCTAA-AAATTC--CTTTAATTTAAACCAC-ACCC---GTTAA
gi|2 : TT-T----TTTTGTTGTATG-TCG-ATTTGCTTA---------------TTATTATCTT--TA--ATTTAATTCT-------------CGGT-A--T----GA-TCA----GTA-GC-TATCAG-----CTGGCATATTT-GTA-ATTTGTAA--ATAACGATT--TTTAACATATCATAC-AAACCTGTCA---CTTGTAT-----TC-AATGTTATTACTAATA-TTTCTCTGAGGTTA--------------T-------------TTTCAAA----AGAAACATTTTGAAATTTAATTTGATTCATTGTTGTGGCAT-ATTGTGTTGA-TG---TATTACCAC-ACATAGT-AACGCTGTTTTAGT---TTAA-AAAGCTAACATTT--------TCATATAATATA-CGTGTATTTC--GAGAC-TC-AG-TACCAGTGCTAAT---A-ATTCACCGCT-GC--------TGTA-AATT--AGT--C--TCT--CT--TTTT-ACCGTCC-TG----ACAC--AC--TGTTGACCCAACATTTTT---TTTT------TCTTTTGCAATTTTC-TAAT-TGCC-TAGAATGCAACCATTTTGAC-TTAAAGA-AACATACTTTTTTTTCA----AG-AC-TG-----C-ACGGTTGAAGAGAAAAAAAAAT-TAGTTGTCCTAA-T-TTGTGCT----AATTGAATA----TC-CGTTATCGCGACGATTAG-TTTATAAGACATATTATTA----CAA-TTGCAATTACGTATTACAGTTTCACGGGCACG-TC-GTGGCAATTCCCAAATT--ATTGAACCTCTGGTAC-AAAAATTTGTTCAAAA--CCAA-ACAAATT-TT-AATTGAAT-AATTCCTCGGAATTTCCTGTCGCGA-TCGCAA---AACCT---TT-------CTCCGTAAATGTATATCTTTAAATG-GTGTAATG------------CTAC-ATGTATTACA-TTTCTTAAA--TGACTACTTGGATTCACATGC-------AATATCGT---AATTATGCCTGT--GACGTCGTGAACGTC--CAAT--CAGCACTGGTGACCGCCAT-AGGT-TA-CA-TGC----------GTAACGCTTGAC--TATAA-ACTAAAT------TGCC---------TCCAGCAAATCATTCAACAA--AA---AAAAA---CATTTCT-ATGAATCTCGTTTTAATTTAA--AACAACCCAGTGCTAATTGAATTCATAACCACAC------A--C---TATAGTCAATTAT-AGTCA-GAC-ATTTTTGAACAG-ATAGGCTTGAAAAA----AGACTGTGGCAC-CAATCTCATTAACATAAGCGC-ATCGGAT-AATGCCACACG-CCAAGCCACGTA--TGACAACAGATAT-T----TATCACTCTTTC-TTTAGT----CTTGGTTA--TTCATTTC-AAAAACCATTTATCGA-ATATAATTCCAAATGTT-GATATCATAATTAAATT--CAGCAAATAC-AC-CACATATAC--ATGTtagtccagtccaatttgtcaaccaaacctcaagaaaatttgcaacacaag
gi|8 : CATTTA---------------T--TAAT-TT--TAGTATCTAC---T-------------TAGTCAACTTAACG--TCAAA
gi|25 : gcac--T-------------CAAT-AGCT----C--TCAATGTGCACGT-GATTAG-GCCTCTAG--TAATTTGTACC--TATAAATATAAC-ATTGC-TTAGCATATCA-TA-AAA--tttgtctccttttttacgtctgtgacagcgtgttgacattcaatttttgttgcaatttagtaattgttagagtggatatattttgaattaaagaaaacattttttcaagacaagcacaattaagaaaaatatttagttgtcttcatgtgtgttaattgaatagctgtacggacgattggttttaagatagtaattcaatttcaaggaaggtattacatttacggcatggtgtgacattcagtgttgataccgtacataggctaaaaaaacccgacaaattctaactgaatcaatttaaatttcctgtcgcggtgaaatttggatttgcacattctgtaaatgatatttaaatggtgtacattacatatattacatttttaaatgacattgagtcaatgaatatcgtatctatctgtgacgttttgaacgtcaaaccatcactgtgacacataggtctacattgcata
gi|4 : aAATT-CAAT-ATAATAGCTT-TC-AAATCCA--------------T-------------TTGTAAA-TT-A--------TTAAA---TG-------TTGTAG-TCTTAGTTAAATGTAT-AATAGAAATATCATAAACA-AT-TTTAA-TTTG-TTT--TCCATC-A-TAAACTAATA-TTGCATATGATCATTAAATGT--TG-ATA------AAAATGTACAG-TA--ATCG----TT--A-ATATAACGTT--C---GTCA-C-TAGACGTCAA-------------T--TTTC-A-CATGTGTGTGAGACATAGACGCTGTTG-----A-ATTTATCTTTTTGGTGGGATTTGATA-AATTTTT-TCAT-TG-CCTAAA-------TATCTTGGA-GAACAGATAA-AT-C---TTTTTCAAGAATGCACAAGAAATGCGAC-ATTCCAA----AAAA---TC-------CTTTA-TATTCTGTTCCGCGATGAAATATATGGCATT-CA-CG-AATGGTTGAATTT-TTAC--ATAG--GCTATTACAATTTC-AATGACATAATGAA--GTTAA-GAGAAG-GTAGTGAC-ATTT----AAT--GTTGAT-CTGC-GTA--ATTGGCTAA---AAAC--CA-GAACAAATT-TT-CATAAAATCAACTT----AAACTT-TTGTT-CGA-A---CACCGAATTTCGA-TTACACCATTT--TAAAT--ATA--AT--AATG-TTTT-ATAACCAAGAGAAACTTACAAAAAATTACT-TAC-TTAAAATTGGC-ATC--AATTTA-GTACAGTTCCTAATAACG-ATGAAT------------ATGTTTTT-ACGTC--AAATAACATTGG---TGAC--ACAC-AA--CAT--ATTTCGATATCA-ATGTAAA-TTGGACGTTATAATACTACATATTAA-TAT
gi|7 : TCAAA-TTCAG-----TTTTGAA---TA-------TCATTA-TGTTGCATAATTGTGTTGATTG---TATCACAAG-A-ATAGT-AA-GTTG-TTTAGT---TT-A-AAAGCCGATA-TT--------TCATCTAATGTG-CGAGTATTTTTAAAAACGTA-AG-TACCACTG--AGTATAA-ATTCACCGTC-AC---GTCAACGTA-ACGTCAAATTAGTCTCT--TT--TTTT-A-CGTCTGTG----ACAT-GA-CGTGTTG-----ACATTCAA---TT--------TTTGTTACAA-TTTTGTATT-TG-T-TACAGTGGATATATTTTGAA-TCAGAGA-AA-ATCT---TTTTTCA----AG-ACAAG-----C-AC-ATTTAAG----AAAAATAttaccattctaaaa
gi|8 : tctcaactcttgggttgtttgattggggaggggggtgtttgtttttagtcttttgtttgttgcattgtttatttattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnG-CACCATTT--ATTA--A-TTTTAGTATCTACTTAGTCAACTTA-ACGTCAAATTTG--TCTCCTT--TTTT-A-CGTCTGTG----ACA--G--CGTGTTG-----ACATTCAA---TTT--------TTGTTGCAATTTA-GTAAT-TG-T-TAGAGTGGATATATTTTGAA-TTAAAGA-AA-ACAT---TTTTTCA----AG-ACAAG-----C-AC-AATTAAG----AAAAATATTTAGTTGTCTTCA-T-GTGTGTT----AATTGAATA----GC-TG-TA-CG-GACGATTGG-TTT-TAAG--ATAGTAATT----CAATTTCAAGGAAGGTATTACA--TTTAC-GGCATG-GT-GTGAC-ATTC----AGT--GTTGA--TACC-GTAC-ATAGGCTAA---AAAAACCC-G-ACAAATT-CT-AACTGAATCAATTT----AAATTTCCTGTCGCGG-T---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-ATT--GAGTCA-ATG--------AATATCGT----ATC-TATCTGT--GACGTTTTGAACGTC--AAAC--CATCACTG-TGAC--ACAT-AGGTCTA-CATTGC-ATA
gi|32 : TCTGTG----GCAT-GAC-GTGTTG-----ACATTCAA---TT--------TTTGTTGCA
gi|29 : G-TTT-TAAG--ATAGTGATT----CAGTTTCAAGTTACGTATTACA--TTTAC-GGCACG-
gi|23 : a-GGCAGG-GT-GAGCC-ATTC----ATT--GTTTA--CTCA-GTAGGATTATCTCA---GAAA--CC-G-ACGAATTGTT-CACTAAGTCAACTC----AAATTTCCAGTGTTGA-T---GA---A
gi|24 : GCAGG-GT-GAG-C-ATTC----ATT--GTTTA--CTCA-GTAGGATTATCTCA---GAAA--CC-G-ACGAATT-TTTCACTAATTCAACTC----AAATTTCCAGTGTTGA-T---GA---AA
gi|13 : ATAA-ACTACATGTC-A-TATCAAAAATCTGTTCAAAAAATCGTTC-ACACGTAATCTAAAA-TCCTATTTCT-A-AAACCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAA--ATAACC-CAA------AACC---T--------TTAC-TATCA-GAC-A-TTTTGAA-AGAGTA-ACTT---TAA----ACGTTATGACACACAATCTCATTAATATAACCGCTAT-GAAT-ATT-CCACATA-TCAGG-CACGTA--TGATAC-AG-TAT-TTCAGTATC---TTTTCTTTAAGT----A-TAGTTATTTTCATTTC-AAAAC-CA
gi|18 : TTAATTTAA--CAAAAACC---GTTTACTCGGT--ATAACC-AAAGTTATTAACC---AAACA----TCAT-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTT---GAA----ACGTTGTAACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|5 : AACTCATT--ATAAAC-CAA------AACCCCAT--------TTACCTATCAAGACCA-TTTTGAA-AGTG-A-ACTT---AAC-----CGTTGTGACACACAATCTTATTACCATAAC-GATAT-GAATTAAT-CCACATAATCAAG-CACGTGAGTGATAA-AA-AATAT----TATC---TTTTC-GTAAGT----A-T-TTTATTTTCATTTTTAAAAC-CACT-ATC-AGAAATTAATTCAAATTTTTAATG----AAAT--ATTGCCAG--AATTCCTCACACATAACC-AATGTA-CTACAAACGTATGCA-----TTAATGCCTATTTCTACACGTTAAGGTTTGATCTACACC-TCCAATTCTGCCACTCTGAATCAGCGT-TACTGCATACTGATTAAGATGACATCATAATTTTAATA-TGTACAT-ATCAACATCAAAATCT-----AAA-TT-AATCTGCAAAATTT-GT--GTT-GTATTA--T--TAATTTT-AAGAAA-ATATA-TTAA-CATTT-GGTAAAG-TGTGTGTG--ACGCT-------GTTGTT--A--C--GA------------CTACA---G-GC-------CATATT-ACGT--AAAAATCCAAACAT--TCAAC--CAA-ACATGA------------ATA-TTTG--C-AGT-TTAAAAAGA----TT-TATTTGATA--TCAAAATGGAT--AGGAATGTAAAATTTACCGGT-C--AC-AA-TGAT-ATA---TAATTTTC---------GGTGTATA-TAA---TAGTGT-TTTTAT-CA-TGTAAGA--CAG-CGTAG-TGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TCGACACCCCAACAGC--GTG-C-CGG
gi|6 : AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTT------TTTTACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGATGC-AG-AAT-T----TCTC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTA-AAAAC-CACTTATCGACATATGAATTCAAATTTTCGATA----AATA--ATT--CAG--AATTC-CCACACATGTCCGAATGTATCTACAA---TACGTAATGGCCTA-TA-----TTCCACACGTTAAGGTTT-ATCTACACCGCCC--TTCTTGCATTTTGTGTCAACGTCTACA------GCACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAGTCT-----TAA-TT-ATTCTGCAAAATTTTAT--GTTTGTGTCA--T--TAGTTTT-AAGAAA-GC-TA-TCAA-CATTTTGGTAAA---GTGTGTGTGACACC-------GTCGTT--A--CCGGT------------CTACA---T-GC-------AATTTTTACGT--AAATATCCAAATAT--TCAAGC-TAATACAATTAAT---------AT--TTAG--C-ATT-TTGAAAG-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATT-ACCG-T-C--ACAA--TGAT-ATG---TAGCTTTC---------C---TA-------------------TATTCA-TATAAAA--CGG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-CTAACA--CCAACAGC--
gi|28 : AC-A-TTTTGAA-AGTGTA-ACTT---GAA----ACGTTGTGACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|19 : CAATCTCATTAATATAACCGCTAT-GAAT-AAT-TCACATA-TCAGG-CACGTA--TGATAC-AT-TAT-T----TATC---TTTTC-TTAATTAAGAA-TAGTTATTTTCATTTC-AAAAC-CATTTAT
gi|9 : TATTATCAACATCGCAATCTACTAGTAAACT-ATTCTGCAAAAATTTA-----------CA--T--TAGTTTT-AAGAAA-GC-TA-TTCA-CATTTTAG-AAAA-TGTGTGTGTAACACT-------GCCGTT--A--CTGGT------------CTACA---T-AC-------AATATTTACGT--AAATAGCCGAATCT--TTAA-G-CAA-A-A---------------AT--TCAA--T-ATT-TTAAAAA-AAAGGTT-T-TT-GATA--TAGAAATGGAT--AT-AATGTTCAATT-ACT--G-T--AA-AC-TGAT-ATG---CAACTTTT---------G---TAGA-ATA---AAGTGT-TTTTATTCA-TATAAAA--CTG-CG-AGATGCTACT------TTAA-----------------------C--AA-TA--------GACA--CCAACAGC--ATG-C
gi|11 : ttCACCACAATCT-----TAA-TTTATGCTTCAAAATTTTGCTCGGTTGTGTCAGTT--AGGTTTTTAAGAAAAGC-TAATCAAATATTTTGGTTACA-AGTGTGTGTGA-ACCAACCAAAGTCGTT--A---CGGT------------CTGTAAATCAGCATGACCAAATATTTACGT--CAAAATCCGAACATCCTCAAGGCCAATACAATTAATC--------AT--TTCG--C-ATT-TTAA--G-A----TG-TCTT-TTTAAGTTACAATCGAT--AA-AATGTAGATTA-CCT--T-C--ACAA--TGAT-ATAGTTTAGCTTTC---------C---TTCG-TTAGATAAGTGT-TTTTA
gi|15 : ttgtcATCAGAATTT-----TG--CT-ATCCTGCCAAATTGTAG--GTTTTTGTTA--T--A-GTGAT-GA----------------CATATTCATAATA-TGTCTATATTACACT-------CTCCTTGTA--TCTGT------------CTACA---T-AC-------GATAATTGTGA--AAATGTAGAAATAG--TCAAGC-CAATATAGGCCTACATACAAAAAT--TTCA--C-ATTCTTAAAAA-A----T---ATT-GCTA--TCAAAATGGAT--AG-GATGTA-AATT-ACT--T-C--AA-AAGTGAT-ATG---TAACCTTC---------G---TGTA-TTA---AA
gi|10 : T-GTTCTTCAAACGTTTGT--GTTTGTATTG--TTAAAATCTT-AAGGAA-TT-TG-TTCA-CATTTTGGTAAGG-CTTGTG-----CAAT-------AT--TT--A--CTG--------------CAACA----------------TCTTTATGT--AAATAT--AAAGAT-----------ATATG---------------AA--CTAGGAC-ATT-TTAAAAAGA----CG-TATT-GATA--TCGATATGGATCTAG-AACGTAAGGTT-AGC--C-C--TA-A--TGAA-ATG---TAACGTTCGTGTACTAAT---TATAATTG---ATGCGC-CTTTATTCA-CATAAA---CAG-CGTACACTCTACC-------TAA----T-C---------ACGC--GC--AA-TA-CGAA-CTGGCA--CTACCGGC--GCG-CGCGGCactgcgcaaatgttacgt
gi|27 : AATTTT-AAGAAT-GC-CA-TGGA-CATTTTGGTAA---TATCTGTGTGACA---------GTCTTT--A--Cgctctta
gi|22 : TTTT-AAGAAT-GT-TA-TGAA-CATATTGGTAA---TATCTGTGCGACAT---------TCATT--AATTCA--------------CTACA---T-GC-------AACAGTTACGTAAAAATATCAAAATAC--GTAAGG-ttaa
gi|14 : TAAAGATGTGCGTGTTACGTT-------ATCGTT--A--CCAGTACATGTACACGCCTACA---T-GC-------AATATATAT-C--AAATATCACAATAT--TCAAGC-TAATACATGTTAG---------ATAATTCA--CGATT-TTGCAAA-A----TA-CGTT-GATA--TCAAAATGCAT--AG-A----AAAACT-ACCG-T-CA-AA-A--TGAT-ATG---TAACTTTT---------G---TATA---G---AAAAGTATTTTGCTCA-TATAAAA--CAG-CGTACATGCTGCC------GTAA----T-G---------ATCT--GGAAAA-AA-ATTGTTTAACA--CCAACAGC--GTG-t
gi|16 : TCG--C-ATT-TTAAAGA-AGTA-TAATATT-GATA--TTGAAATGGAT--AT-AATGTCAAATT-ACC--G-TAAAA-A--TGATAATG---CAACTTTC---------C---T------------GTGT-T-----------TAAA---CAG-CGTAAATGCTACC------ACAATCCTT-T---------GTACGTGT--AATTA-CGTA-TTGACA--CCAATAGC--GTG-C
gi|20 : TACAATCGAT--AG-AATGTAAAATT-ACC--GAC--ACAA--TGAT-ATG---TAGCTT-----------C---TATA-TTG---AAGTGT-TTTTAATCC-TCTTAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--atga
gi|26 : -AATGCCAACTT-ACCG-T-C--GC-AA-TGAT-ATA---CAGCTTTC---------C---CATA-TTA---AAGTGT-TTT
gi|21 : -TTTTATTCAGTATAAAGAGCAGGCGTAGATGCTACCGGCGCAGTAA----TCGATACCGGCTGTAC--GT--AATTACCTTA-TTGACA--CAAACAGCAAGTGACGCGACagtc
gi|31 : AA----T-G---------GTAC--GT--AA-TA-CTTA-TTGGCA--CCAACAGC--GTG-CGCGAC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|30 ): AATAGTCCAGTCAATTTTTCAACCAACCTCAAGAAAATTGCAACACAA
Alignments
lowQualScore : 1 111 11 4444444444444 333333333333 111 8888888888888888888888888888888 1 11 111 1 11 11111 3333333 11111 1 99999999999999 111111 111 2222222 1111 11 111 222 111 1111 222222222222 1111 1 22222222222222 1111 111111 11111 222 1111 1 1111 111 111 22222 1111 3333 111 1111111111 11 1111111 1111 111 111 1 11 11 444444444444 11 1111 2 5555555 11 11111 11 11 11 11 333333333333 11 11 5555555555555555 11 1 111 11 11 111 11 222222 33333 111 1111 1111 111 111111 1 2 1 2222 11 11 11 11 22 7777777777777777777777777 2 2 33 111111 11 11111 111 11 111 11111 3333333333333333 11111111 55555555555555555555555 1111111111 111111111111 1111111111111 1111111 2222222222222222
lowQualScore : 3 111 33 2 0 4444444444444 0 666666666666 3 5 5 111 6 0 1 77 888 5 6 0000000000000000000000000000000 1 4 6 8 8 3 8 5 666 11 0 555 1 6 11 88888 2 22 8888888 55555 0 44444444444444 777777 111 1111111 99 6 1 4444 3 11 8 6 444 5 99 8 6 8 222 8 8 8 222 8 6 8888 8 8 8 1 444444444444 0 4444 3 0 6 77777777777777 6 77 0 2222 666666 44444 222 5 5 7 4444 6 6 6 1 99 6 3 6 4444 7 7 99 111 111 00000 99 8 7777 1 1111 8 1 0 8 6 6 999999 6 1 6 1 222 5 1 5 5 3 5 9999999999 99 5 5 7777777 1 6 77 77 2 5 66 2222 6 5 000 000 5 0 0 8 9 8 11 11 8 8 111111111111 8 0 8 8 11 8 3333 8 0 0 8888888 11 55555 0 0 11 11 2 8 0 11 8 66 1 0 000000000000 11 33 8 3 888 3 4444444444444444 22 2 3 4 0 2 111 33 11 0 1 444 11 8 333333 77777 6 6 111 6 5 5 5 1 5 6666 5 99 2 2 5 5 5 2 5 6 99 6 6 6 4444 111 6 555555 1 3 0 0 1 2 1111 33 33 33 11 3 33 7 9999999999999999999999999 3 3 00 22 0 1 6 1 555555 44 7 6 4 66666 6 5 5 111 4 5 6 22 4 4 66 1 4 4 777 0 55 00000 55 55 0000000000000000 66666666 66 4 888 66 1 1 66 888 3 33333333333333333333333 0 4 4 4 8 9999999999 66 0 55 4 2 3 3 888888888888 3 666 7777 11 11 8888888888888 3 3 4 777 4 2222222 1111111111111111 55 66 8 4 4 66 66 5
lowQualScore : . ... .. . . ............. . ............ . . . ... . . . .. ... . . ............................... . . . . . . . . ... .. . ... . . .. ..... . .. ....... ..... . .............. ...... ... ....... .. . . .... . .. . . ... . .. . . . ... . . . ... . . .... . . . . ............ . .... . . . .............. . .. . .... ...... ..... ... . . . .... . . . . .. . . . .... . . .. ... ... ..... .. . .... . .... . . . . . . ...... . . . . ... . . . . . . .......... .. . . ....... . . .. .. . . .. .... . . ... ... . . . . . . .. .. . . ............ . . . . .. . .... . . . ....... .. ..... . . .. .. . . . .. . .. . . ............ .. .. . . ... . ................ .. . . . . . ... .. .. . . ... .. . ...... ..... . . ... . . . . . . .... . .. . . . . . . . . .. . . . .... ... . ...... . . . . . . .... .. .. .. .. . .. . ......................... . . .. .. . . . . ...... .. . . . ..... . . . ... . . . .. . . .. . . . ... . .. ..... .. .. ................ ........ .. . ... .. . . .. ... . ....................... . . . . . .......... .. . .. . . . . ............ . ... .... .. .. ............. . . . ... . ....... ................ .. .. . . . .. .. .
lowQualScore : 3 000 88 5 2 0000000000000 8 666666666666 2 6 2 777 7 7 7 99 999 7 7 9999999999999999999999999999999 0 6 0 0 0 8 0 6 444 00 8 888 0 0 00 55555 0 88 5555555 22222 0 00000000000000 777777 777 7777777 22 7 0 2222 8 00 0 0 000 6 00 0 0 0 000 0 0 0 444 0 0 2222 0 0 0 0 000000000000 8 5555 2 8 7 55555555555555 7 77 1 1111 999999 33333 111 7 7 3 2222 7 7 7 0 22 7 3 7 8888 8 5 88 777 777 00000 00 0 0000 0 0000 0 0 8 0 7 7 777777 7 0 7 0 333 7 4 0 7 6 7 7777777777 33 7 7 6666666 0 6 99 99 7 7 77 1111 6 7 000 000 0 8 8 0 6 0 00 22 0 0 000000000000 0 8 0 0 00 0 4444 0 0 8 0000000 00 00000 8 8 00 00 8 0 8 00 0 22 0 8 666666666666 00 88 0 2 666 2 2222222222222222 55 5 2 2 0 5 000 88 00 8 0 000 00 0 000000 88888 7 7 777 7 7 7 7 7 7 6666 7 11 2 5 0 0 0 0 0 7 22 7 7 7 2222 777 7 888888 7 3 8 0 0 8 2222 88 88 88 00 2 22 3 0000000000000000000000000 3 3 77 00 7 0 7 0 000000 77 3 5 0 77777 7 7 1 444 9 7 6 22 4 4 11 0 0 0 111 7 55 55555 55 55 7777777777777777 11111111 11 4 111 11 1 4 11 000 2 11111111111111111111111 1 4 4 4 9 6666666666 11 7 55 0 2 6 6 999999999999 6 444 7777 77 44 6666666666666 6 7 4 111 4 9999999 9999999999999999 55 11 9 4 4 11 11 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGG-T-GTTTG--ATTGGGGAGGGGGG-------------TGTTTTTT-A--GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATA-T--C-AATGC-ATT-CTAATACTT-TCTGAGTTTATC--A-----AA--TTTTCAAATTCAG-----TTTTGAA---TA-------TCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTT--AG-TTTAAAA-GCCGATATTT-CATCTAATG--T-ACGTGTATTTT--AAAACGTA-AG-TA-CCANTG---A-TA-AT-ATTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTTTG-TAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTT-NAT-TTGTGTT----AATTGAATAT---GC-TNTACG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-GGCACG-GT-GTGAC-ATTC----A----NTGTTGA--CT-CC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAATT-TTA-ACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-TAT--CTGTG---ACGTTTTGAACGTC--AAAT--CATCACT-GTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CAA------AACCT-A---TT-AC-TA---TCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTCC-CACACATGTCCGAATGTATCTACAA---TACGTA-----CTAGTG--TA-TTCCACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATAC--ACTAAGATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAAGCC-AATACANGT-----------A--AT---TTCG-C-ATT-TTAAAAA-A----TG-TA-TTGATA--TCGAAATGGAT--A-GAATGTAAAA-TTA-CC-GT-C-A-AA--TGAT-ATG---TAGCTTTC---CTATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
Reference ( family-5838 ) : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGG-T-GTTTG--ATTGGGGAGGGGGG-------------TGTTTTTTAA--GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TN--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGCGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCANA-AAA--TGT-A---CTCGTATGCAT--T--C-AATGC-ANT-CTAATACTT-TCTGAGTTTAT--------------TTTCAAATTCAG-----TTTTGAA---TA-------TCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTT---AG-TTTAAAA-GCCAATATTT-CATCTAATG--T-ACGTGTATTTC--AAAACGTA-AG-TA-CCANTG---A-TA-A--ATTCACCGTCGC-GTCAACGTA-ACGTCAAATT-GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCGNTTT-TT-TGTTGCAATTTTTG-TAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTT-NAT-TTGTGTT----AATNGAATA----GC-TNTACG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCNAGTNACGTATTACA--TTTAC-GGCACG-GT-GTGAC-ATTC----A----NTGTTGA--CT-CC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAATT-TTN-ACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCCGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-GAATCTAT--CTGTG---ACGTTTTGAACGTC--AAAT--CATCGCT-GTGAC--ACAT-AGGT-CTNCATTGC-ATATC-A--T-GTAAC-NTTGAC--TATAA-ACTACATGTTA-TGTCAAAA-----TTCA-G-AAA-TCGTTC-ACAAGTAATCCAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAANCC---GTTAACTCAAT--ATAACC-CAA------AACCT-AG--TT-AC-TA---TCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACGTA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCACTTATCGA-ATATNAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTCN-CACACATATCC-AATGTATCTACAAACGTACGCAATGGCCTAATGCCTATTTCCACACGTTAAGGTTTGATCTACACCGCCCAATTCTNNCACTCTGNGTCAGCGTCTACNGCATACNNACTAAGATGACATCACAATTTTAATAATGTATATCATCAACATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TNAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACT---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCAAATAT--TCAAGNC-AATACANGT-----------A--AT---TTCG-C-ATT-TTAAAAA-A----TG-TA-TTGATA--TCGAAATGGAT--A-GAATGTAAAA-TTA-CC-GT-C-A-NA--TGAT-ATG---TAACTTTC---CTATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
gi|1 : TTTTTTTTCTTTCTCAACTCTTGGG-T-GTTTG--ATTGGGGAGGGGGG-------------TGTTTTTT----GTCTAG--TCTTT----TTTTGTT---TG-TTGCATTCGTTTAT--TT--AT-TTTAGT-ATCTACTT-------------T--AGT-AGCT----G--TCAAAGTGCA-GT-GATTAG-GCCTCTAGTA-ATT-GTACAT--GTAAATATAACATTGCTTTAGCATATCAAA-AAA--TGT-A---CTTGTATGCATA-T--CGAATGC-ATT-CTAATACTT-TCTAAGTTTAT--------------TTTTAAATTCAG-----TTTTGAA---TA-------TCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-AT-GTAA-GTTGTTT---AG-TTTAAAA-GCCGATATTT-CATCTAATG--T-GCG-GTATTTT--AAAACGTA-AG-TA-CCACTG---AGTA-A--ATTCACCGTCAC-GTCAACGTA-ACGTAAAAT--GTCTT--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCATTTTGTT-TGTTACAATTTTTG-TAA-T-TGT-TAGAGTGGATA--TATTTTGAA-CTAAAGA-AA-ATA---CTTTTTCATGACAAGCACATTT-AAGA---AA---AATATCT-----AGTTGTCTT-CAT-TTGTGTT----AATTGAATA----GC-TGTACG-GACGATTGG-TTT-TAAGATAG--TG--GCT-CAATTTCCAGTAAGGTATTACA--TTTAC-GGCACG-GT-GTGAC-ATTC----A----GTGTTGA--CT-CC-GT----AG-ATAGACCAAAAAA--CCG--ATTAATT-CTA-ACTGAATCAATTT----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------CTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGATTCA-ATG-AATATCGTATAAATTTAT--CTG-----ACGTTTTGAACGTC--AAAT--CGTCACT-G--AC--ACAT-AGGT-CTTCATTGC-ATATC-A--TTGTAAC-TTTGAC--TATAA-ACTACATGTCA-TATCAAAAGTCTGTTCATA-AAA-TCGTTC-ACAAGTAATCTAAAAATCCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CAA------AACCT-----TT-AC-TA---TCA-GAC-A-TTTTGAA-AGTGTA-ACTTA---AA-ACGTTGTGACACACAATCTCATTAATATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CAAGTA--TGAT-GAAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAGCATTTATCGACATATGAATTCAAATTTTGGATA----AATT--ATT--CAG--AATTCT-CACACATGTCCGAATGTATCTACAA---TGCGTA-----CTAGTA-----TTCCACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATACGCACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TAAG--TTATAAGAAA-GC-TA--TCAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CACG--CAA-TAT--TTACGT--AAATATCCGAACAT--TCAAGGC-AATAC---------------A--AT---TTCG-C-ATT-TTAAACA-A----TG-TA-TTGATA--TTACAATCGAT--A-GAATGTAAAA-TGA-CC--T-C-A-CA--TGAT-ATG---CAGCTTTC---CTATATTG---A---------A-GTGTTTTTATTCA-TGTAAAT--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAGCAGC--GTG-CGCGGC
gi|10 : gatccactatgatttgcggacttT-GTTCTTCAAACGTTTGT--GTTTGTATTG-TTAAAATCTTAAGGAA-TT-TG--TTCACATTTTGGT-A-AGG-CTTGTG-----C--AAT---AT--TT--A--C-----------------------------TG--CAA-CATCTTTATGT--AAATAT--AAA-------------GATATATG------------A--AC---TAGGAC-ATT-TTAAAAAGA----CG-TA-TTGATA--TCGATATGGATCTA-GAACGTAAGG-TTAGCC-CT-----AA--TGAA-ATG---TAACGTTC---GTGTACTA---ATTATAATTGATGCGCCTTTATTCA-CATAAA---CAG-CGTACACTCTACC-------TAA----T-C---------ACGC--GC--AA-TA-CGAA-CTGGCA--CTACCGGC--GCG-CGCGGC
gi|11 : CACCACAATCT-----TAA-TTTATGCTTCAAAATTTTGCTCGGTTGTGTCAGTTAGGTTTTTAAGAAAAGC-TAATCAAATATTTTGGTTACAAG-TGTGTGTG-AACCAACCAAAGTCGTT--A--C-GGT------------CTGTAAATCAGCATGACCAAATAT--TTACGT--CAAAATCCGAACATCCTCAAGGCCAATACAATT-----------A--ATCATTTCG-C-ATT-TT--AAG-A----TG-TC-TTTTTAAGTTACAATCGAT--A-AAATGT-AGA-TTA-CC-TT-C-ACAA--TGAT-ATAGTTTAGCTTTC---CTTCGTTAGATA---------A-GTGTTTTTAgctctta
gi|12 : ttgtcTTGGG-T-TTTTACAGTTTGGGA----------------------TTTTTAAAAGTCTATATTCTTTATTCTTTAGTT---TA-TCGCAT-CGTTTAT--TC--AT-TTTAGT-ATTTACTTATTCGTATCCGATC--AGT-AGCT----G--TCAATGTGCAAGT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GCAAATATAACGTC-TCCTAGCATATCATATAAA--TGT-A---CTCGTATGCATATT--G-AATGC-ATT-CAAATACTT-TCTAAGTTTATCTGAATACGAAATTTTTCAAATTCAG-----TTTTGAA---TA-------CCATTA--T-GTTGCA----TA
gi|13 : ATAA-ACTACATGTCA-TATCAAAAATCTGTTCA-A-AAAATCGTTC-ACACGTAATCTAAAAT-CCTATTTCT-A-AAACCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAA--ATAACC-CAA------AACCT-----TT-AC-TA---TCA-GAC-A-TTTTGAA-AGAGTA-ACTTT---AA-ACGTTATGACACACAATCTCATTAATATAACCGCTAT-GAAT-ATT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-TTCAGTATC---TTTTCTTTAAGT----A-TAGTTATTTTCATTTC-AAAACCA
gi|14 : T-A-AAGATGTGCGTGTTAC--GTT---ATCGTT--A--CCAGTACATGTACACGCCTA--------CATG--CAA-TAT--ATAT-C--AAATATCACAATAT--TCAAGCT-AATACATGTTA---------G--ATAA-TTCA-CGATT-TTGCAAA-A----TA-CG-TTGATA--TCAAAATGCAT--A-GA----AAAA-CTA-CC-GT-CAA-AA--TGAT-ATG---TAACTTTT---GTATAGAA---A---------A-GTA-TTTTGCTCA-TATAAAA--CAG-CGTACATGCTGCC------GTAA----T-G---------ATCT--GGAAAA-AA-ATTGTTTAACA--CCAACAGC--GTG-
gi|15 : ATCAGAATTT-----TG--CT-ATCCTGCCAAATTGTAG--GTTTTTGTTA-T-AG--T-----GA-----------TGACATATTCAT-A-ATA-TGTCTATATTAC--ACT---CTCCTTGTA--TCTGT------------CTA--------CATA--CGA-TAA--TTGTGA--AAATGTAGAAATAG--TCAAGCC-AATATAGGCCTACATACAAAA--AT---TTCA-C-ATTCTTAAAAA-A----T---A-TTGCTA--TCAAAATGGAT--A-GGATGTAAA--TTA-CT--T-C-A-AAAGTGAT-ATG---TAACCTTC---GTGTATTA---A---------A-
gi|16 : TCG-C-ATT-TTAAAGA-AGTA-TAATA-TTGATA--TTGAAATGGAT--A-TAATGTCAAA-TTA-CC-GTAA-A-AA--TGATAATG---CAACTTTC---CT---------------------GTGTTT------------AAA--CAG-CGTAAATGCTACC------ACAATCCTT-T---------GTACGTGT--AATTA-CGTA-TTGACA--CCAATAGC--GTG-actgcgcaaatgttacgt
gi|17 : TTTTTTTTCTT-CTCAACTCTTGGGTT-GGTTG--ATTGGGGAGGAGGGTTGTGTGTTTGGTTGTTTTTT-A--GTCTAGT-TCTTTATTCTTTTATT---TG-TTGCA-CCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAAatga
gi|18 : TTAATTTAA--CAAAAACC---GTTTACTCGGT--ATAACC-AAAGTTATTAACCA-AACATC-AT-TA---TCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTAACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|19 : CAATCTCATTAATATAACCGCTAT-GAAT-AAT-TCACATA-TCAGG-CACGTA--TGAT-ACAT-TAT-T----TATC---TTTTC-TTAATTAAGAA-TAGTTATTTTCATTTC-AAAACCATTTAT
gi|2 : TTTTTTTGTTGTATG-TCG-ATTTGCTTAT--TATTATCTTTA---ATTTAATT-------------CTCGGT-A--T----GA-TCA----GTA-GC-TATCAG-----CTGGCATATTTGTA-ATTTGTAAATA--ACGAT-TTTTAACATATCATACAAACCTGTCA---CTTGTAT------T--C-AATGTTATTACTAATATTTCTCTGAGGTTAT--------------TTTCAAA---AGAAACATTTTGAAATTTAATTTGATTCATTG--TTGTGGCA----TA-TTG--TGT-TGAT-G---TATTACCAC-ACATAGTAACGCTGTTTT--AG-TTTAAAAAGCTAACATTTTCATATAATA--T-ACGTGTATTTC--GAGAC-TC-AG-TA-CCAGTG---C-TA-ATAATTCACCGCTGCTGTAAAT-TA---GTC-------TCTC--T--TTTT-ACCGTCC-TG----ACAC--AC--TGTTGACCCAACATTTTTTTT-TTCTTTTGCAATTTTC--TAA-T-TGCCTAGAATGCAAC--CATTTTGAC-TTAAAGA-AACATACTTTTTTTTCAAGACT-GCACGGTTGAAGAGAAAA---AAAAATT-----AGTTGTCCT-AAT-TTGTGCT----AATTGAATATCC-GT-TAT-CGCGACGATTAG-TTTATAAGACA---TATTATTACAATTGCAA-TTACGTATTACAGTTTCACGGGCACG-TC-GTGGCAATTCCCAAA----TTATTGAACCT-CTGGTACAAAA-ATTTGTTCAAAAC--CAA--ACAAATT-TTA-ATTGAAT-AATTCCTCGGAATTTCCTGTCGCG-ATCGCAA---AACCT---TT-------CTCCGTAAATGTATATCTTTAAATG-GTGTAATG------------CTAC-ATGTATTACA-TTTCTTAAA--TGACTACTTGGATTCACATGCAATATCGT---AAT-TATGCCTGTG---ACGTCGTGAACGTC--CAAT--CAGCACTGGTGACCGCCAT-AGGT--TACA-TGC------------GTAACGCTTGAC--TATAA-ACTAAAT-----TGCC---------TCCA-GCAAA-TCATTCAACAA--AA---AAAAA-C--ATTTCT-ATGAATCTCGTTTTAATTTAA--AACAACCCAGTGCTAATTGAATTCATAACCACAC------ACTAT-AG--TCAAT-TATAGTCA-GAC-ATTTTTGAACAG-ATAGGCTTGAAAAA-AGACTGTGGCAC-CAATCTCATTAACATAAGCGC-ATCGGAT-AATGCCACACG-CCAAGCCACGTA--TGACAACAGATAT-T----TATCACTCTTTC-TTTAGT----CTTGGTTA--TTCATTTCAAAAACCATTTATCGA-ATATAATTCCAAATGTT-GATATCATAATTAAATT--CAGCAAATACA-C-CACATATAC--ATGT
gi|20 : AATCGAT--A-GAATGTAAAA-TTA-CC-GA-C-A-CAA-TGAT-ATG---TAGCTT-----CTATATTG---A---------A-GTGTTTTTAATCC-TCTTAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--
gi|21 : tacTTTTATTCAGTATAAAGAGCAGGCGTAGATGCTACCGGCGCAGTAA----TCGATACCGGCTGTAC--GT--AATTACCTTA-TTGACA--CAAACAGCAAGTGACGCGAC
gi|22 : --TTTTAAGAAT-GT-TA--TGAACATATTGGT-A-A---TATCTGTGCGAC--AT-----TCATT--AATTCA--------------CTA--------CATG--CAA-CAG--TTACGTAAAAATATCAAAATAC--GTAAG
gi|23 : -GGCAGG-GT-GAGCC-ATTC----A----TTGTTTA--CT-CA-GT----AGGATTATCTCAGAAA--CCG--ACGAATTGTTC-ACTAAGTCAACTC----AAATTTCCAGTGTTG-AT---GA---Agt
gi|24 : GCAGG-GT-GAG-C-ATTC----A----TTGTTTA--CT-CA-GT----AGGATTATCTCAGAAA--CCG--ACGAATT-TTTCACTAATTCAACTC----AAATTTCCAGTGTTG-AT---GA---AA
gi|25 : T-------------C--AAT-AGCT----C--TCAATGTGCACGT-GATTAG-GCCTCTAGTA-ATTTGTACCT--ATAAATATAACATT-GCTTAGCATATCATA-AAA--
gi|26 : aAATGCCAAC-TTA-CC-GT-C-G-CAA-TGAT-ATA---CAGCTTTC---CCATATTA---A---------A-GTGTTTT
gi|27 : AA--TTTTAAGAAT-GC-CA--TGGACATTTTGGT-A-A---TATCTGTGTGAC--A-----GTCTTT--A--Cagtc
gi|28 : AC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACA----------------------CTAT-GAAT-AAT-CCACGTA-ttaa
gi|29 : G-TTT-TAAGATAG--TG--ATT-CAGTTTCAAGTTACGTATTACA--TTTAC-GGCACG-
gi|3 : a-------------TGTTTTTTTA--GT-TGG--T-TTTCTT--TTTGTT---TGATTGCATTCGTTTAAAATA--AA-ATAAGTCATTTACTTATTCATATCCGATC--AGT-AGC-----GATTTAATGCGCA-TTTGCTTGGAGCCTCT----------T---T--GTAAATATAACGTT-C-TTAACATATGAAA-ATA--TAT-ATTACTTGTATGTAT--CTCC-AATAC-AG--CTAATACTT-CATGAGTTTATCGAATACGAAATATTTTAAAATTCAA-----ATTTGA----TA-------TCATTA--T--TTG-A----TAATTG--T-T-TAATTG---CATCAC-AC-A-ATAGTAA-GTCTTTT---AGTTTTTAAA-GTCAGTATTT-CATCTAACA--TAACGTGTATT-----AAATGTA-AGATA-CCAGT----A-CA-AT-ATTCACC-----------CGTA-ACGTCAAATA-GTTTC--TCATTTTGAC--TC-GTG----ACCA-GAACGTGTTGAC-----ATCTG--TT-TT-TGCTGGAA-TTTTG-TAA-TGTGT-AGGAGTGCATA--TATTTTGAAGTTAAAGAGAA-AAA---TCTTTTCAAGACATGCACATTT--AGA---AA---AATCTTT-----AGTTGTCTTGAAT-TTGTGTA----TATAGAATT----GC-TTTATG-GACGATTGG-TTT-TAAGATAG--TT--ATT-C-ATTTTCAGCAACGTATTACA---TTAC--GCACACGT-GTGAC-ATTC----CCGGTCTGTTGAG-CTCCC-GT----AG-ATTGTCTAAAAAA---CG--AAAAATT-TTA-ACTGAATCTACTC----AAATTTCCTGTCATGAAT---GA---AATTT-GATTTGCA-CATTCTCTAAATG-ATA--TT--AATGCGTGC-ATA------------TTAC-ATATA-TACATTTT-TTGAA--TTAC-A--T-GACTCA-ATG-AATATCGTA-A----TAT--CTGAG---ACGTTTTGAACG-CAAAAAT--TATCACT-GTGAC--ACATAAGGTATTACATTAC-AAATT-ATTT-GTAAC-GTTGAC--TATAA-ACTACATGTTGCTGTTAAAA-----TTC--------TTGTT---CAAGTAATCCAAAAA-CCTATTTCTAA-AAATTC--CTTTAATTTAAACCAC-ACCC---GTTAA
gi|31 : AA----T-G---------GTAC--GT--AA-TA-CTTA-TTGGCA--CCAACAGC--GTG-CGCGACtagtccagtccaatttgtcaaccaaacctcaagaaaatttgcaacacaag
gi|32 : TCTGTG----GCAT-GAC-GTGTTGAC-----ATTCAA-TT-TT-TGTTGCAgtc
gi|4 : --------------TTTCAAATCCA-------TTTGTA---AA-------TTATTAAAT-GTTGTAGTCTTAGTTAAATGTATAATAGAAATATCATAAACA-ATTTTAA-TTTGTTTTCCA---TCATAA-ACTAATATTG-CATATGATCATT-AAATGTTGATA--AAAATGTACAG-TAATCGTTA---A-TATA--A-----CGTT-C-GTCA-C-TAGACGTCAA-----------T--TTTC-AC-ATGTGTGTGAGACATAGACGCTGTTGA------ATTTATCTT-TT-TGGTGGGATTT--GATAAAT-TTT-TTCATTGCCTAAATATCTTGGA-GAACAGATAA-AT----CTTTTTCAAGA-ATGCACA-----AGA---AATGCGACATTCCAAAAAATC--CTT-TATATTCTGTTCCGCGATGAAATATATGGCATTCACG-AATGGTTGAATTT-TTACATAGGCTA--TTA-CAATTTCAA-TGACATAATGAA--GTTAA-GAGAAG-GTAGTGAC-ATTT----A----ATGTTGAT-CT-GC-GT----A--ATTGGCT-AAAAA--CCAGAACAAATT-TTC-ATAAAATCAACTT----AAACTT-TTGTT-CG-AA---CACCGAATTTCGA-TTACACCATTT--TAAAT--ATA--AT--AATG-TTTT-ATAACCAAGAGAAACTTACAAAAAATTACT-TAC-TTAAAATTGGC-A--TCAATTTA-GTACAGT-TCCTA-A----TAA--CGATGAATATGTTTTT-ACGTC--AAATAACATTG---GTGAC--ACAC-AA----CATATTTCGATATCAA--T-GTAAA-TTGGACGTTATAATACTACATATTA-
gi|5 : aattcaatataatagcAACTCATT--ATAAAC-CAA------AACCCCAT--TT-ACCTA---TCAAGACCA-TTTTGAA-AGTG-A-ACTT----AA-CCGTTGTGACACACAATCTTATTACCATAAC-GATAT-GAATTAAT-CCACATAATCAAG-CACGTGAGTGAT-AAAA-AATAT----TATC---TTTTC-GTAAGT----A-T-TTTATTTTCATTTTTAAAACCACT-ATCAG-AAATTAATTCAAATTTTTAATG----AAAT--ATTGCCAG--AATTCCTCACACATAACC-AATGTA-CTACAAACGTATGCA-----TTAATGCCTATTTCTACACGTTAAGGTTTGATCTACACC-TCCAATTCTGCCACTCTGAATCAGCGT-TACTGCATACTGATTAAGATGACATCATAATTTTAAT-ATGTACAT-ATCAACATCAAAATCT-----AAA-TT-AATCTGCAAAA-TTTGT--G-TTGTATTA-TTAA--TTTTAAGAAA-ATATA--TTAACA-TTTGGT-A-AA---GTGTGTGTGAC--GCT---GTTGTT--A--C--GA------------CTA--------CAGG--CCA-TA---TTACGT--AAAAATCCAAACAT--TCAA-CC-AA-ACATG------------A--ATA--TTTG-C-AGT-TTAAAAAGA----TT-TATTTGATA--TCAAAATGGAT--AGGAATGTAAAATTTA-CCGGT-C-ACAA--TGAT-ATA---TAATTTTCGGTGTATATAA---T---------A-GTGTTTTTA-TCA-TGTAAGA--CAG-CGTAG-TGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TCGACACCCCAACAGC--GTG-C-CGGatatttaccattctaaaa
gi|6 : -AC-TA---TCA-GAC-A-TTTTGAA-AGTGTA-ACTTT---TTTACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-GCAG-AAT-T----TCTC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTA-AAAACCACTTATCGACATATGAATTCAAATTTTCGATA----AATA--ATT--CAG--AATTCC-CACACATGTCCGAATGTATCTACAA---TACGTAATGGCCTA-----TA-TTCCACACGTTAAGGTTT-ATCTACACCGCCC--TTCTTGCATTTTGTGTCAACGTCTACAGC------ACT-AGATGACATCACAATTTTAATAATGTATATCATTATCATCACAGTCT-----TAA-TT-ATTCTGCAAAATTTTAT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TCAACATTTTGGT-A-AA---GTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TTT--TTACGT--AAATATCCAAATAT--TCAAGCT-AATACAATT-----------AATAT---TTAG-C-ATT-TTGAAAG-A----TG-TA-TTGATA--TTACAATCGAT--A-GAATGTAAAA-TTA-CC-GT-C-ACAA--TGAT-ATG---TAGCTTTC---CTA---------------------------TATTCA-TATAAAA--CGG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-CTAACA--CCAACAGC--
gi|7 : T-CTCAACTCTTGGG-TTGTTTG--ATTGGGGAGGGGGG-------------TGTTT------------G--TTTTTAGTCTTTTGTT---TG-TTGCATT-GTTTAT--TT--AT-TTT
gi|7 : TCAAATTCAG-----TTTTGAA---TA-------TCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-ATAGTAA-GTTGTTT---AG-TTTAAAA-GCCGATATTT-CATCTAATG--T-GCGAGTATTTTTAAAAACGTA-AG-TA-CCACTGAGTA-TA-A--ATTCACCGTCAC-GTCAACGTA-ACGTCAAATTAGTCTCTTT--TTTT-AC-GTCTGTG----ACAT-GA-CGTGTTGAC-----ATTCAA-TT-TT-TGTTACAA-TTTTG-TAT-T-TGT-TACAGTGGATA--TATTTTGAA-TCAGAGA-AA-ATC---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaaattcagttttgaatatcattatgttgcataattgtgttgattgtatcacaagaatagtaagttgtttagtttaaaagccgatatttcatctaatgtgcgagtatttttaaaaacgtaagtaccactgagtataaattcaccgtcacgtcaacgtaacgtcaaattagtctctttttttacgtctgtgacatgacgtgttgacattcaatttttgttacaattttgtatttgttacagtggatatattttgaatcagagaaaatcttttttcaagacaagcacatttaagaaaaata
gi|8 : tctcaactcttgggttgtttgattggggaggggggtgtttgtttttagtcttttgtttgttgcattgtttatttattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAA
gi|8 : gcac-GTCAACTTA-ACGTCAAATTTGTCTCCTT--TTTT-AC-GTCTGTG----ACA--G--CGTGTTGAC-----ATTCAATTT-TT--GTTGCAATTTA-G-TAA-T-TGT-TAGAGTGGATA--TATTTTGAA-TTAAAGA-AA-ACA---TTTTTTCAAGACAAGCACAATT-AAGA---AA---AATATTT-----AGTTGTCTT-CAT-GTGTGTT----AATTGAATA----GC-TGTACG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGGAAGGTATTACA--TTTAC-GGCATG-GT-GTGAC-ATTC----A----GTGTTGA--TA-CC-GT----AC-ATAGGCTAAAAAAACCCG--ACAAATT-CTA-ACTGAATCAATTT----AAATTTCCTGTCGCG-GT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGAGTCA-ATG-AATATCGT----ATCTAT--CTGTG---ACGTTTTGAACGTC--AAAC--CATCACT-GTGAC--ACAT-AGGT-CTACATTGC-ATAatttgtctccttttttacgtctgtgacagcgtgttgacattcaatttttgttgcaatttagtaattgttagagtggatatattttgaattaaagaaaacattttttcaagacaagcacaattaagaaaaatatttagttgtcttcatgtgtgttaattgaatagctgtacggacgattggttttaagatagtaattcaatttcaaggaaggtattacatttacggcatggtgtgacattcagtgttgataccgtacataggctaaaaaaacccgacaaattctaactgaatcaatttaaatttcctgtcgcggtgaaatttggatttgcacattctgtaaatgatatttaaatggtgtacattacatatattacatttttaaatgacattgagtcaatgaatatcgtatctatctgtgacgttttgaacgtcaaaccatcactgtgacacataggtctacattgcata
gi|9 : gcaccatttattaattttagtatctacttaTATTATCAACATCGCAATCTACTAGTAAACT-ATTCTGCAAAAATTTA-----------CA-TTAG--TTTTAAGAAA-GC-TA--TTCACATTTTAG--A-AAA-TGTGTGTGTAAC--ACT---GCCGTT--A--CTGGT------------CTA--------CATA--CAA-TAT--TTACGT--AAATAGCCGAATCT--TTAAGCA-AA------------------A--AT---TCAA-T-ATT-TTAAAAA-AAAGGTT-T--TTGATA--TAGAAATGGAT--A-TAATGTTCAA-TTA-CT-GT-A-A-AC--TGAT-ATG---CAACTTTT---GTAGAATA---A---------A-GTGTTTTTATTCA-TATAAAA--CTG-CG-AGATGCTACT------TTAA-----------------------C--AA-TA--------GACA--CCAACAGC--ATG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATAGTCCAGTCAATTTTTCAACCAACCTCAAGAAAATTGCAACACAA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 1 2 11 5555555555555 222222222222 111 8888888888888888888888888888888 1 11 111 1 11 11111 3 1 11 1 22222222222222222222222222222222 1111 11 111 111 1111 22222 1 1111 1 22222222222222 1111 111111 11111 11 2222 1 1111 111 111 22222 1111 22222 1111111111 11 1 1111111 1111 111 111 1 11 11 444444444444 11 1111 2 4444444 11 11111 11 1 11 11 333333333333 11 11 22222 22222222 11 1 111 11 11 111 11 4444444444444444 1111 1111 111 111111 1 1 2222 11 11 11 111 222 4444444 1 1 1 11 3333333333333 11111 111 11 111 11111 3333333333333333 11111111 5555555555555555555 11 1111111 11111111 1111111111111 1111111 2222222222222222
lowQualScore : 3 0 33 2 0 5555555555555 0 444444444444 3 5 5 111 6 0 1 77 999 5 6 0000000000000000000000000000000 1 6 8 8 3 8 5 666 11 0 555 1 6 11 88888 22 3 0 0 33 0 22222222222222222222222222222222 1 3 99 6 1 4444 3 11 8 6 444 999 8 6 8 0 0 8 8 8 222 8 6 5555 8 8 1 33333 0 8 0 4444 3 0 6 77777777777777 6 77 0 2222 666666 44444 77 5 5 2222 6 6 6 1 99 6 3 6 4444 7 7 6 111 111 00000 1 8 8 7777 1 55555 8 1 8 8 6 6 999999 6 6 1 99 1 5 5 1 0 5 3 5 9999999999 99 1 7777777 1 6 77 0 77 2 5 5 1 2222 6 5 000 000 5 0 0 8 3 8 11 11 8 8 111111111111 8 0 8 8 11 8 3333 8 0 0 3333333 8 11 55555 0 0 11 5 6 0 11 8 66 0 000000000000 00 33 8 3 888 3 33333 55555555 22 2 3 0 0 2 111 33 11 0 0 444 11 8 8 3333333333333333 6 6 6 5 5 5 1 5 6666 5 99 2 2 5 5 5 5 6 99 6 6 6 4444 111 6 555555 1 3 0 2 8 0 2 1111 33 33 33 444 6 7 333 3 3333333 3 3 3 88 6 1111111111111 7 6 1 66666 6 5 111 1 5 1 22 4 4 66 1 4 4 222 77 55 33333 55 55 0000000000000000 66666666 66 4 66 66 33 666 4 0 3 7777777777777777777 11 0 4 4 4 8 9999999 0 4 66 0 55 3 6 3 3 99999999 55 3 666 7777 11 11 8888888888888 3 4 777 4 2222222 1111111111111111 55 66 8 4 4 66 66 5
lowQualScore : . . .. . . ............. . ............ . . . ... . . . .. ... . . ............................... . . . . . . . ... .. . ... . . .. ..... .. . . . .. . ................................ . . .. . . .... . .. . . ... ... . . . . . . . . ... . . .... . . . ..... . . . .... . . . .............. . .. . .... ...... ..... .. . . .... . . . . .. . . . .... . . . ... ... ..... . . . .... . ..... . . . . . . ...... . . . .. . . . . . . . . .......... .. . ....... . . .. . .. . . . . .... . . ... ... . . . . . . .. .. . . ............ . . . . .. . .... . . . ....... . .. ..... . . .. . . . .. . .. . ............ .. .. . . ... . ..... ........ .. . . . . . ... .. .. . . ... .. . . ................ . . . . . . . . .... . .. . . . . . . . .. . . . .... ... . ...... . . . . . . . .... .. .. .. ... . . ... . ....... . . . .. . ............. . . . ..... . . ... . . . .. . . .. . . . ... .. .. ..... .. .. ................ ........ .. . .. .. .. ... . . . ................... .. . . . . . ....... . . .. . .. . . . . ........ .. . ... .... .. .. ............. . . ... . ....... ................ .. .. . . . .. .. .
lowQualScore : 3 0 88 5 2 0000000000000 8 000000000000 2 6 2 777 7 7 7 99 777 7 7 9999999999999999999999999999999 0 0 0 0 8 0 6 444 00 8 888 4 0 00 55555 88 0 0 0 22 0 55555555555555555555555555555555 0 7 22 7 0 2222 8 00 0 0 000 888 0 0 0 8 8 0 0 0 444 0 0 8888 0 0 0 00000 6 0 8 5555 2 8 7 77777777777777 7 77 1 1111 999999 33333 11 7 7 3333 7 7 7 0 22 7 3 7 8888 8 5 7 777 777 00000 0 0 0 0000 0 44444 0 0 0 0 7 7 777777 7 7 0 22 7 7 0 4 7 7 6 7 7777777777 33 4 6666666 0 6 99 7 99 7 7 7 3 1111 6 7 000 000 0 8 8 0 8 0 00 22 0 0 000000000000 0 8 0 0 00 0 4444 0 0 8 8888888 0 00 00000 8 8 00 6 0 8 00 0 22 8 666666666666 88 88 0 2 222 2 88888 00000000 55 5 2 8 0 5 000 88 00 8 6 000 00 0 0 0000000000000000 7 7 7 7 7 7 7 7 6666 7 11 2 5 0 0 0 0 7 22 7 7 7 2222 777 7 888888 7 3 8 5 8 2 8 2222 88 88 88 000 7 3 333 7 0000000 3 3 3 33 7 3333333333333 3 5 0 77777 7 7 444 4 7 7 22 4 4 11 0 0 0 111 99 55 22222 55 55 7777777777777777 11111111 11 4 11 11 88 999 4 2 2 4444444444444444444 99 1 4 4 4 9 0000000 8 4 11 7 55 6 6 6 6 77777777 00 6 444 7777 77 44 6666666666666 6 4 111 4 9999999 9999999999999999 55 11 9 4 4 11 11 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTTTG--ATTGGGGAGGGGGGT-------------GTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTAT---C--------GAA-------T---------TTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTG---A-TAATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTTCG-TAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAA-TT-TTAACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA-A-T----AACC---C-ATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACT-AGATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-A-CCG-T-C-ACAA--TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
Reference ( family-5838 ) : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGT-GTTTG--ATTGGGGAGGGGGGT-------------GTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATC-AATGC-ATT-CTAATACTT-TCTGAGTTTAT---C--------AAA-------T---------TTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTG---A-TAATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTTTG-TAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TNTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAA-TT-TTAACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACT-GTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA-A------AACC---T-ATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTACTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTAAGATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-A-CCG-T-C-A-AA--TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
gi|1 : TTTTTTTTCTTTCTCAACTCTTGGGT-GTTTG--ATTGGGGAGGGGGGT-------------GTTTTTT----GTCTAG--TCTTT----TTTTGTT---TG-TTGCATTCGTTTAT--TT--AT-TTTAGT-ATCTACTT-------------T--AGT-AGCT----G--TCAAAGTGCA-GT-GATTAG-GCCTCTAGTA-ATT-GTACAT--GTAAATATAACATTGCTTTAGCATATCAAA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTAAGTTTAT--------------------------------TTTTAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-AT-GTAA-GTTGTTT-AGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CG-GTATTTT--AAAACGTA-AG-TACCACTG---AGTAA-A-TTCACCGTCAC-GTCAACGTA-ACGTAAAAT--GTCTT--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCATTTTGTT-TGTTACAATTTTTG-TAA-T-TGT-TAGAGTGGATA--TATTTTGAA-CTAAAGA-AA-ATA---CTTTTTCATGACAAGCACATTT-AAGA---AA---AATATCT-----AGTTGTCTTCA-T-TTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TG--GCT-CAATTTCCAGTAAGGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AG----TGTTGA--CTCC-GT----AG-ATAGACCAAAAAA--CCG--ATTAA-TT-CTAACTGAATCAATTT----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------CTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGATTCA-ATG-AATATCGTATAAAT-TTAT--CTG-----ACGTTTTGAACGTC--AAATCGTCACT-G--AC--ACAT-AGGT-CTTCATTGC-ATATC-A--TTGTAAC-TTTGAC--TATAA-ACTACATGTCA-TATCAAAAGTCTGTTCATA-AAA-TCGTTC-ACAAGTAATCTAAAAATCCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA-A------AACC---T--TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTA---AA-ACGTTGTGACACACAATCTCATTAATATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CAAGTA--TGAT-GAAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAGCATTTATCGACATATGAATTCAAATTTTGGATA----AATT--ATT--CAG--AATTC-T-CACACATGTCCGAATGTATCTACAA---TGCGTACTA----G--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATACGC--ACT-AGATGACATCACAATTTTAATAATGTATATCATTATCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TAAG--TTATAAGAAA-GC-TA--TCAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CACG--CAA-TAT--TTACGT--AAATATCCGAACAT--TCAA-GGCAATAC---------------A---AT--TTCG-C-ATT-TTAAACA-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATG-A-CC--T-C-A-CA--TGAT-ATG---CAGCTTTCC---TATATTG---A---------A-GTGTTTTTATTCA-TGTAAAT--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAGCAGC--GTG-CGCGGC
gi|10 : gatccactatgatttgcggacttT-GTTCTTCAAACGTTTGT--GTTTGTATTG-TTAAAATCTTAAGGAA-TT-TG--TTCACATTTTGGT-A-AGG-CTTGTG-----C--AAT---AT--TT--A--C-----------------------------TG--CAA-CATCTTTATGT--AAATAT------A-----AA-G---ATATATG------------A---AC--TAGGAC-ATT-TTAAAAAGA----CG-TATT-GATA--TCGATATGGATCTAG-AACGTAAGGTT-AGCCC-T-----AA--TGAA-ATG---TAACGTTCG---TGTACTA---ATTATAATTGATGCGCCTTTATTCA-CATAAA---CAG-CGTACACTCTACC-------TAA----T-C---------ACGC--GC--AA-TA-CGAA-CTGGCA--CTACCGGC--GCG-CGCGGC
gi|11 : CACCACAATCT-----TAA-TTTATGCTTCAAAATTTTGCTCGGTTGTGTCAGTTAGGTTTTTAAGAAAAGC-TAATCAAATATTTTGGTTACAAG-TGTGTGTG-AACCAACCAAAGTCGTT--A--C-GGT------------CTGTAAATCAGCATGACCAAATAT--TTACGT--CAAAATCCGAACATCCTCAAGGCCAATACAATT-----------AATCAT--TTCG-C-ATT-TT--AAG-A----TG-TCTT-TTTAAGTTACAATCGAT--AA-AATGT-AGATT-A-CCT-T-C-ACAA--TGAT-ATAGTTTAGCTTTCC---TTCGTTAGATA---------A-GTGTTTTTAgctctta
gi|12 : ttgtcTTGGGT-TTTTACAGTTTGGGA----------------------TTTTTAAAAGTCTATATTCTTTATTCTTTAGTT---TA-TCGCAT-CGTTTAT--TC--AT-TTTAGT-ATTTACTTATTCGTATCCGATC--AGT-AGCT----G--TCAATGTGCAAGT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GCAAATATAACGTC-TCCTAGCATATCATATAAA--TGT-A---CTCGTATGCATATTGAATGC-ATT-CAAATACTT-TCTAAGTTTAT---CTGAATACGAAAT------T---------TTTCAAATTCAGTTTTGAATACCATTA--T-GTTGCA----TA
gi|13 : ATAA-ACTACATGTCA-TATCAAAAATCTGTTCA-A-AAAATCGTTC-ACACGTAATCTAAAAT-CCTATTTCT-A-AAACCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAA--ATAACC-CA-A------AACC---T--TT-AC-TATCA-GAC-A-TTTTGAA-AGAGTA-ACTTT---AA-ACGTTATGACACACAATCTCATTAATATAACCGCTAT-GAAT-ATT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-TTCAGTATC---TTTTCTTTAAGT----A-TAGTTATTTTCATTTC-AAAACCA
gi|14 : T-A-AAGATGTGCGTGTTAC--GTT---ATCGTT--A--CCAGTACATGTACACGCCTA--------CATG--CAA-TAT--ATAT-C--AAATATCACAATAT--TCAA-GCTAATACATGTTA---------G---ATAATTCA-CGATT-TTGCAAA-A----TA-CGTT-GATA--TCAAAATGCAT--AG-A----AAAACT-A-CCG-T-CAA-AA--TGAT-ATG---TAACTTTTG---TATAGAA---A---------A-GTA-TTTTGCTCA-TATAAAA--CAG-CGTACATGCTGCC------GTAA----T-G---------ATCT--GGAAAA-AA-ATTGTTTAACA--CCAACAGC--GTG-
gi|15 : ATCAGAATTT-----TG--CT-ATCCTGCCAAATTGTAG--GTTTTTGTTA-T-AG--T-----GA-----------TGACATATTCAT-A-ATA-TGTCTATATTAC--ACT---CTCCTTGTA--TCTGT------------CTA--------CATA--CGA-TAA--TTGTGA--AAATGTAGAAATAG--TCAA-GCCAATATAGGCCTACATACAAAA---AT--TTCA-C-ATTCTTAAAAA-A----T---ATT-GCTA--TCAAAATGGAT--AG-GATGT-AAATT-A-CT--T-C-A-AAAGTGAT-ATG---TAACCTTCG---TGTATTA---A---------A-
gi|16 : TCG-C-ATT-TTAAAGA-AGTA-TAATATT-GATA--TTGAAATGGAT--AT-AATGTCAAATT-A-CCG-TAA-A-AA--TGATAATG---CAACTTTCC---T---------------------GTGTTT------------AAA--CAG-CGTAAATGCTACC------ACAATCCTT-T---------GTACGTGT--AATTA-CGTA-TTGACA--CCAATAGC--GTG-actgcgcaaatgttacgt
gi|17 : TTTTTTTTCTT-CTCAACTCTTGGGTTGGTTG--ATTGGGGAGGAGGGTTGTGTGTTTGGTTGTTTTTTA---GTCTAGT-TCTTTATTCTTTTATT---TG-TTGCA-CCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAAatga
gi|18 : TTAATTTAA--CAAAAACC---GTTTACTCGGT--ATAACC-AA-AGTTATTAACCAAAC-ATC-AT-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTAACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|19 : CAATCTCATTAATATAACCGCTAT-GAAT-AAT-TCACATA-TCAGG-CACGTA--TGAT-ACAT-TAT-T----TATC---TTTTC-TTAATTAAGAA-TAGTTATTTTCATTTC-AAAACCATTTAT
gi|2 : TTTTTTTGTTGTATG-TCG-ATTTGCTTAT--TATTATCTTTA---ATTTAATT-------------CTCGGT-A--T----GA-TCA----GTA-GC-TATCAG-----CTGGCATATTTGTA-ATTTGTAAATA--ACGAT-TTTTAACATATCATACAAACCTGTCA---CTTGTAT-----TC-AATGTTATTACTAATATTTCTCTGAGGTTATTTTC--------AAAAGAAACAT---------TTTGAAATTTAATTT--GAT-TCATTG--TTGTGGCA----TA-TTG--TGT-TGAT-G---TATTACCAC-ACATAGTAACGCTGTTTTAGTTTA-AAAAGCTAACATTTTCATATAATA--TA-CGTGTATTTC--GAGAC-TC-AG-TACCAGTG---C-TAATAATTCACCGCTGCTGTAAAT-TA---GTC-------TCTC--T--TTTT-ACCGTCC-TG----ACAC--AC--TGTTGACCCAACATTTTTTTT-TTCTTTTGCAATTTTC--TAA-T-TGCCTAGAATGCAAC--CATTTTGAC-TTAAAGA-AACATACTTTTTTTTCAAGACT-GCACGGTTGAAGAGAAAA---AAAAATT-----AGTTGTCCTAA-T-TTGTGCT----AATTGAATAT---CC-GTTATCGCGACGATTAG-TTTATAAGACA---TATTATTACAATTGCAA-TTACGTATTACAGTTTCACGG-GCACGTC-GTGGCAATTCCCAAAT----TATTGAACCTCTGGTACAAAA-ATTTGTTCAAAAC--CAA--ACAAA-TT-TTAATTGAAT-AATTCCTCGGAATTTCCTGTCGCG-ATCGCAA---AACCT---TT-------CTCCGTAAATGTATATCTTTAAATG-GTGTAATG------------CTAC-ATGTATTACA-TTTCTTAAA--TGACTACTTGGATTCACATGCAATATCGT---AAT-T-ATGCCTGTG---ACGTCGTGAACGTC--CAATCAGCACTGGTGACCGCCAT-AGGT--TACA-TGC------------GTAACGCTTGAC--TATAA-ACTAAAT-----TGCC---------TCCA-GCAAA-TCATTCAACAA--AA---AAAAA-C--ATTTCT-ATGAATCTCGTTTTAATTTAA--AACAACCCAGTGCTAATTGAATTCATAACCACACACTAT--AGTC---A-ATT-AT-AGTCA-GAC-ATTTTTGAACAG-ATAGGCTTGAAAAA-AGACTGTGGCAC-CAATCTCATTAACATAAGCGC-ATCGGAT-AATGCCACACG-CCAAGCCACGTA--TGACAACAGATAT-T----TATCACTCTTTC-TTTAGT----CTTGGTTA--TTCATTTCAAAAACCATTTATCGA-ATATAATTCCAAATGTT-GATATCATAATTAAATT--CAGCAAATACAC-CACATAT
gi|20 : AATCGAT--AG-AATGTAAAATT-A-CCG-A-C-ACAA--TGAT-ATG---TAGCTT--C---TATATTG---A---------A-GTGTTTTTAATCC-TCTTAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--acatgt
gi|21 : tacTTTTATTCAGTATAAAGAGCAGGCGTAGATGCTACCGGCGCAGTAA----TCGATACCGGCTGTAC--GT--AATTACCTTA-TTGACA--CAAACAGCAAGTGACGCGAC
gi|22 : --TTTTAAGAAT-GT-TA--TGAACATATTGGT-A-A---TATCTGTGCGAC--AT-----TCATT--AATTCA--------------CTA--------CATG--CAA-CAG--TTACGTAAAAATATCAAAATAC--GTAA-G
gi|23 : -G-GCAGGGT-GAGCC-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CCG--ACGAA-TTGTTCACTAAGTCAACTC----AAATTTCCAGTGTTG-AT---GA---Agt
gi|24 : -GCAGGGT-GAG-C-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CCG--ACGAATTT-TTCACTAATTCAACTC----AAATTTCCAGTGTTG-AT---GA---AA
gi|25 : T-------------C--AAT-AGCT----C--TCAATGTGCACGT-GATTAG-GCCTCTAGTA-ATTTGTACCT--ATAAATATAACATT-GCTTAGCATATCATA-AAA--
gi|26 : a-AATGCCAACTT-A-CCG-T-C-GCAA--TGAT-ATA---CAGCTTTCC---CATATTA---A---------A-GTGTTTT
gi|27 : AA--TTTTAAGAAT-GC-CA--TGGACATTTTGGT-A-A---TATCTGTGTGAC--A-----GTCTTT--A--Cagtc
gi|28 : AC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACA----------------------CTAT-GAAT-AAT-CCACGTA-ttaa
gi|29 : G-TTT-TAAGATAG--TG--ATT-CAGTTTCAAGTTACGTATTACA--TTTAC-G-GCACG
gi|3 : aTTTTTTA---GT-TGG--T-TTTCTT--TTTGTT---TGATTGCATTCGTTTAAAATA--AA-ATAAGTCATTTACTTATTCATATCCGATC--AGT-AGC-----GATTTAATGCGCA-TTTGCTTGGAGCCTCT----------T---T--GTAAATATAACGTT-C-TTAACATATGAAA-ATA--TAT-ATTACTTGTATGTATCTCCAATAC-AG--CTAATACTT-CATGAGTTTAT---C--------GAA-------TACGAAATATTTTAAAATTCAAATTTGA-TATCATTA--T--TTG-A----TAATTG--T-T-TAATTG---CATCACA-C-A-ATAGTAA-GTC-TTTTAGTTTTTAAA-GTCAGTATTT-CATCTAACA--TAACGTGTATT-----AAATGTA-AGATACCAGT----A-CAATA-TTCACC-----------CGTA-ACGTCAAATA-GTTTC--TCATTTTGAC--TC-GTG----ACCA-GAACGTGTTGAC-----ATCTG--TT-TT-TGCTGGAATTTT-G-TAA-TGTGT-AGGAGTGCATA--TATTTTGAAGTTAAAGAGAA-AAA---TCTTTTCAAGACATGCACATTT-A-GA---AA---AATCTTT-----AGTTGTCTTGAAT-TTGTGTA----TATAGAAT-T---GC-TTTA-TG-GACGATTGG-TTT-TAAGATAG--TT--ATT-CATTTTCA-GCAACGTATTACA--TT-AC-GCACACG-T-GTGAC-ATTC----CCGGTCTGTTGAG-CTCCCGT----AG-ATTGTCTAAAAAA--C-G--AAAAA-TT-TTAACTGAATCTACTC----AAATTTCCTGTCATGAAT---GA---AATTT-GATTTGCA-CATTCTCTAAATG-ATA--TT--AATGCGTGC-ATA------------TTAC-ATATA-TACATTTT-TTGAA--TTAC-A--T-GACTCA-ATG-AATATCGTA-A----T-AT--CTGAG---ACGTTTTGAACG-CAAAAATTATCACT-GTGAC--ACATAAGGTATTACATTAC-AAATT-ATTT-GTAAC-GTTGAC--TATAA-ACTACATGTTGCTGTTAAAA-----TTC--------TTGTT---CAAGTAATCCAAAAA-CCTATTTCTAA-AAATTC--CTTTAATTTAAACCAC-ACCC---GTTAA
gi|31 : tgtAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGGCA--CCAACAGC--GTG-CGCGACtagtccagtccaatttgtcaaccaaacctcaagaaaatttgcaacacaag
gi|32 : TCTGTG----GCAT-GAC-GTGTTGAC-----ATTCAA-TT-TT-TGTTGCAgtc
gi|4 : ---------TTTCAAATCCA--TTTGTAAATTATTAAAT-GTTGTAGTCTTAGTTAAATGTATAATAGAAATATCATAAACA-ATTTTAA-TTTGTTTTCCATCA-TAA-ACTAATATTG-CATATGATCATTA-AATGTTGATA--AAAATGTACAG-TA--ATCG---T-TAATA-T--AACGTT-C-GTCA-C-TAGACGTCAA-----------T--TTTC-AC-ATGTGTGTGAGACATAGACGCTGTTGA------ATTTATCTT-TT-TGGTGGGATTT--GATAAAT-TTT-TTCATTGCCTAAATATCTTGGA-GAACAGATAA-AT----CTTTTTCAAGA-ATGCACA-----AGA---AATGCGACATTCCAAAAAATC--CTTTA-TATTCTGTTCCGCGATGAAATATATGGCATTCA-CG-AATGGTTGAATTT-TTACATAGGCTA--TTA-CAATTTCAA-TGACATAATGAA--GTTAA-G-AGAAGGTAGTGAC-ATTT----AA----TGTTGAT-CTGC-GT----A--ATTGGCT-AAAAA--CCAGAACAAA-TT-TTCATAAAATCAACTT----AAACTT-TTGTT-CG-AA---CACCGAATTTCGA-TTACACCATTT--TAAAT--ATA--AT--AATG-TTTT-ATAACCAAGAGAAACTTACAAAAAATTACT-TAC-TTAAAATTGGC-A--TCAATTTA-GTACAGT-TCCTA-A----T-AA--CGATGAATATGTTTTT-ACGTC--AAATAA-CATTGGTGAC--ACAC-AA----CATATTTCGATATCAA--T-GTAAA-TTGGACGTTATAATACTACATATTA-
gi|5 : aattcaatataatagcAACTCATT--ATAAAC-CA-A------AACC---CCATTTACCTATCAAGACCA-TTTTGAA-AGTG-A-ACTT----AA-CCGTTGTGACACACAATCTTATTACCATAAC-GATAT-GAATTAAT-CCACATAATCAAG-CACGTGAGTGAT-AAAA-AATAT----TATC---TTTTC-GTAAGT----A-T-TTTATTTTCATTTTTAAAACCACT-ATC-AGAAATTAATTCAAATTTTTAATG----AAAT--ATTGCCAG--AATTC-CTCACACATAACC-AATGTA-CTACAAACGTATGCATTAA--TGCCTATTTCTACACGTTAAGGTTTGATCTACACC-TCCAATTCTGCCACTCTGAATCAGCGT-TACTGCATA--CTGATTAAGATGACATCATAATTTTAATA-TGTACAT-ATCAACATCAAAATCT-----AAA-TT-AATCTGCAAAATTT-GT--GTT-GTATTA-TTAA--TTTTAAGAAA-ATATA--TTAACATTT-GGT-A-AAG-TGTGTGTG--AC--GCT---GTTGTT--A--C--GA------------CTA--------CAGG--CCA-TAT--T-ACGT--AAAAATCCAAACAT--TCAA--CCAA-ACATG------------A---ATA-TTTG-C-AGT-TTAAAAAGA----TT-TATTTGATA--TCAAAATGGAT--AGGAATGTAAAATTTA-CCGGT-C-ACAA--TGAT-ATA---TAATTTTCGGTGTATATAA---T---------A-GTGTTTTTAT-CA-TGTAAGA--CAG-CGTAG-TGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TCGACACCCCAACAGC--GTG-C-CGGatatttaccattctaaaa
gi|6 : -AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTT---TTTACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-GCAG-AAT-T----TCTC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTA-AAAACCACTTATCGACATATGAATTCAAATTTTCGATA----AATA--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTAATGGCCTA--TATTCC-ACACGTTAAGGTTT-ATCTACACCGCCC--TTCTTGCATTTTGTGTCAACGTCTACAG------C--ACT-AGATGACATCACAATTTTAATAATGTATATCATTATCATCACAGTCT-----TAA-TT-ATTCTGCAAAATTTTAT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TCAACATTTTGGT-A-AA---GTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TTT--TTACGT--AAATATCCAAATAT--TCAA-GCTAATACAATT-----------AAT-AT--TTAG-C-ATT-TTGAAAG-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATT-A-CCG-T-C-ACAA--TGAT-ATG---TAGCTTTCC---TA---------------------------TATTCA-TATAAAA--CGG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-CTAACA--CCAACAGC--
gi|7 : T-CTCAACTCTTGGGTTGTTTG--ATTGGGGAGGGGGGT-------------GTTT------------G--TTTTTAGTCTTTTGTT---TG-TTGCATT-GTTTAT--TT--AT-TTT
gi|7 : TCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-ATAGTAA-GTTG-TTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CGAGTATTTTTAAAAACGTA-AG-TACCACTGAGTA-TAA-A-TTCACCGTCAC-GTCAACGTA-ACGTCAAATTAGTCTCTTT--TTTT-AC-GTCTGTG----ACAT-GA-CGTGTTGAC-----ATTCAA-TT-TT-TGTTACAA-TTTTG-TAT-T-TGT-TACAGTGGATA--TATTTTGAA-TCAGAGA-AA-ATC---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaaattcagttttgaatatcattatgttgcataattgtgttgattgtatcacaagaatagtaagttgtttagtttaaaagccgatatttcatctaatgtgcgagtatttttaaaaacgtaagtaccactgagtataaattcaccgtcacgtcaacgtaacgtcaaattagtctctttttttacgtctgtgacatgacgtgttgacattcaatttttgttacaattttgtatttgttacagtggatatattttgaatcagagaaaatcttttttcaagacaagcacatttaagaaaaata
gi|8 : tctcaactcttgggttgtttgattggggaggggggtgtttgtttttagtcttttgtttgttgcattgtttatttattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAA
gi|8 : gcac-GTCAACTTA-ACGTCAAATTTGTCTCCTT--TTTT-AC-GTCTGTG----ACA--G--CGTGTTGAC-----ATTCAATTT-TT--GTTGCAATTTA-G-TAA-T-TGT-TAGAGTGGATA--TATTTTGAA-TTAAAGA-AA-ACA---TTTTTTCAAGACAAGCACAATT-AAGA---AA---AATATTT-----AGTTGTCTTCA-T-GTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGGAAGGTATTACA--TTTAC-G-GCATGGT-GTGAC-ATTC----AG----TGTTGA--TACC-GT----AC-ATAGGCTAAAAAAACCCG--ACAAA-TT-CTAACTGAATCAATTT----AAATTTCCTGTCGCG-GT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGAGTCA-ATG-AATATCGT----ATCT-AT--CTGTG---ACGTTTTGAACGTC--AAACCATCACT-GTGAC--ACAT-AGGT-CTACATTGC-ATAatttgtctccttttttacgtctgtgacagcgtgttgacattcaatttttgttgcaatttagtaattgttagagtggatatattttgaattaaagaaaacattttttcaagacaagcacaattaagaaaaatatttagttgtcttcatgtgtgttaattgaatagctgtacggacgattggttttaagatagtaattcaatttcaaggaaggtattacatttacggcatggtgtgacattcagtgttgataccgtacataggctaaaaaaacccgacaaattctaactgaatcaatttaaatttcctgtcgcggtgaaatttggatttgcacattctgtaaatgatatttaaatggtgtacattacatatattacatttttaaatgacattgagtcaatgaatatcgtatctatctgtgacgttttgaacgtcaaaccatcactgtgacacataggtctacattgcata
gi|9 : gcaccatttattaattttagtatctacttaTATTATCAACATCGCAATCTACTAGTAAACT-ATTCTGCAAAAATTTA-----------CA-TTAG--TTTTAAGAAA-GC-TA--TTCACATTTTAG--A-AAA-TGTGTGTGTAAC--ACT---GCCGTT--A--CTGGT------------CTA--------CATA--CAA-TAT--TTACGT--AAATAGCCGAATCT--TTAA-GCAAA------------------A---AT--TCAA-T-ATT-TTAAAAA-AAAGGTT-T-TT-GATA--TAGAAATGGAT--AT-AATGTTCAATT-A-CTG-T-A-A-AC--TGAT-ATG---CAACTTTTG---TAGAATA---A---------A-GTGTTTTTATTCA-TATAAAA--CTG-CG-AGATGCTACT------TTAA-----------------------C--AA-TA--------GACA--CCAACAGC--ATG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATAGTCCAGTCAATTTTTCAACCAACCTCAAGAAAATTGCAACACAA
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1 1 5555555555555 222222222222 111 8888888888888888888888888888888 1 11 111 1 11 11111 1 11 1 22222222222222222222222222222 1111 11 111 111 1111 22222 1 1111 1 22222222222222 1111 111111 11111 11 3333 1 1111 111 111 22222 1111 22222 1111111111 11 1 1111111 1111 111 111 1 11 11 444444444444 11 1111 2 4444444 11 11111 11 1 11 11 333333333333 11 11 22222 22222222 11 1 111 11 11 111 11 44444444444 22222 1111 1111 111 111111 1 1 2222 11 11 11 111 222 4444444 1 1 1 11 333333333 1 11111 111 11 111 11111 3333333333333333 11111111 5555555555555555555 11 1111111 1111111111111 1111111 2222222222222222
lowQualScore : 3 3 0 2 0 5555555555555 0 444444444444 3 5 5 111 6 0 1 77 999 5 6 0000000000000000000000000000000 1 6 8 8 3 8 5 666 11 0 555 1 6 11 88888 22 3 8 0 33 0 22222222222222222222222222222 1 3 99 6 1 4444 3 11 8 6 444 999 8 6 8 0 0 8 8 8 222 8 6 5555 8 8 1 33333 0 8 0 4444 3 0 6 77777777777777 6 77 0 2222 666666 44444 77 5 5 0000 6 6 6 1 99 6 3 6 4444 7 7 6 111 111 00000 1 8 8 7777 1 55555 8 0 8 8 6 6 999999 6 6 1 99 1 5 5 1 0 5 3 5 9999999999 99 1 7777777 1 6 77 888 2 5 77 2222 6 5 000 000 5 0 0 8 3 8 11 11 8 8 111111111111 8 0 8 8 11 8 3333 8 0 0 3333333 8 11 55555 0 0 11 5 0 11 8 66 0 000000000000 00 33 8 3 888 3 33333 55555555 22 2 3 0 0 2 111 33 11 0 0 444 11 8 33333333333 66666 6 6 6 5 5 5 1 5 6666 5 99 2 2 5 5 5 5 6 99 6 6 6 4444 111 6 555555 1 3 0 2 8 0 2 1111 33 33 33 444 6 7 333 1 3333333 3 3 3 88 6 000000000 3 7 6 1 66666 6 5 111 1 5 1 22 4 4 66 1 4 4 222 77 55 33333 55 55 0000000000000000 66666666 66 4 66 66 33 666 4 0 3 7777777777777777777 11 0 4 4 4 8 9999999 0 4 66 0 55 3 6 3 55 0 3 3 666 7777 11 11 8888888888888 3 4 777 4 2222222 1111111111111111 55 66 8 4 4 66 66 5
lowQualScore : . . . . . ............. . ............ . . . ... . . . .. ... . . ............................... . . . . . . . ... .. . ... . . .. ..... .. . . . .. . ............................. . . .. . . .... . .. . . ... ... . . . . . . . . ... . . .... . . . ..... . . . .... . . . .............. . .. . .... ...... ..... .. . . .... . . . . .. . . . .... . . . ... ... ..... . . . .... . ..... . . . . . . ...... . . . .. . . . . . . . . .......... .. . ....... . . .. ... . . .. .... . . ... ... . . . . . . .. .. . . ............ . . . . .. . .... . . . ....... . .. ..... . . .. . . .. . .. . ............ .. .. . . ... . ..... ........ .. . . . . . ... .. .. . . ... .. . ........... ..... . . . . . . . . .... . .. . . . . . . . .. . . . .... ... . ...... . . . . . . . .... .. .. .. ... . . ... . ....... . . . .. . ......... . . . . ..... . . ... . . . .. . . .. . . . ... .. .. ..... .. .. ................ ........ .. . .. .. .. ... . . . ................... .. . . . . . ....... . . .. . .. . . . .. . . . ... .... .. .. ............. . . ... . ....... ................ .. .. . . . .. .. .
lowQualScore : 3 2 0 5 2 0000000000000 8 000000000000 2 6 2 777 7 7 7 99 777 7 7 9999999999999999999999999999999 0 0 0 0 8 0 6 444 00 8 888 4 0 00 55555 88 0 8 0 22 0 00000000000000000000000000000 0 7 22 7 0 2222 8 00 0 0 000 888 0 0 0 8 8 0 0 0 444 0 0 8888 0 0 0 00000 6 0 8 5555 2 8 7 77777777777777 7 77 1 1111 999999 33333 11 7 7 0000 7 7 7 0 22 7 3 7 8888 8 5 7 777 777 00000 0 0 0 0000 0 44444 0 6 0 0 7 7 777777 7 7 0 22 7 7 0 4 7 7 6 7 7777777777 33 4 6666666 0 6 99 666 7 7 00 1111 6 7 000 000 0 8 8 0 8 0 00 22 0 0 000000000000 0 8 0 0 00 0 4444 0 0 8 8888888 0 00 00000 8 8 00 6 0 00 0 22 8 666666666666 88 88 0 2 222 2 88888 00000000 55 5 2 8 0 5 000 88 00 8 6 000 00 0 88888888888 00000 7 7 7 7 7 7 7 7 6666 7 11 2 5 0 0 0 0 7 22 7 7 7 2222 777 7 888888 7 3 8 5 8 2 8 2222 88 88 88 000 7 3 333 0 0000000 3 3 3 33 7 333333333 3 3 5 0 77777 7 7 444 4 7 7 22 4 4 11 0 0 0 111 99 55 22222 55 55 7777777777777777 11111111 11 4 11 11 88 999 4 2 2 4444444444444444444 99 1 4 4 4 9 0000000 8 4 11 7 55 6 6 6 00 5 6 6 444 7777 77 44 6666666666666 6 4 111 4 9999999 9999999999999999 55 11 9 4 4 11 11 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATCT------GAA--------T---------TTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTG---A-TAATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-G-TAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CC--GACGAATT-TT-AACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
Reference ( family-5838 ) : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-TGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-------GAA--------T---------TTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTG---A-TAATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTTCG-TAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CC--GACGAATT-TT-AACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
gi|1 : TTTTTTTTCTTTCTCAACTCTTGGGT-GTT-TGATTGGGGAGGGGGG-------------TGTTTTTT----GTCTAG--TCTTT----TTTTGTT---TG-TTGCATTCGTTTAT--TT--AT-TTTAGT-ATCTACTT-------------T--AGT-AGCT----G--TCAAAGTGCA-GT-GATTAG-GCCTCTAGTA-ATT-GTACAT--GTAAATATAACATTGCTTTAGCATATCAAA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTAAGTTTAT-----------------------------TTTTAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-AT-GTAA-GTTGTTT-AGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CG-GTATTTT--AAAACGTA-AG-TACCACTG---AGTAA-A-TTCACCGTCAC-GTCAACGTA-ACGTAAAAT--GTCTT--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCATTTTGTT-TGTTACAATTTTTG-TAA-T-TGT-TAGAGTGGATA--TATTTTGAA-CTAAAGA-AA-ATA---CTTTTTCATGACAAGCACATTT-AAGA---AA---AATATCT-----AGTTGTCTTCA-T-TTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TG--GCT-CAATTTCCAGTAAGGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AG----TGTTGA--CTCC-GT----AG-ATAGACCAAAAAA--CC--GATTAATT-CT-AACTGAATCAATTT----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------CTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGATTCA-ATG-AATATCGTATAAAT-TTAT--CTG-----ACGTTTTGAACGTC--AAATCGTCACTG---AC--ACAT-AGGT-CTTCATTGC-ATATC-A--TTGTAAC-TTTGAC--TATAA-ACTACATGTCA-TATCAAAAGTCTGTTCATA-AAA-TCGTTC-ACAAGTAATCTAAAAATCCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A------AACC---T-TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTA---AA-ACGTTGTGACACACAATCTCATTAATATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CAAGTA--TGAT-GAAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAGCATTTATCGACATATGAATTCAAATTTTGGATA----AATT--ATT--CAG--AATTC-T-CACACATGTCCGAATGTATCTACAA---TGCGTACTA----G--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATACGC--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TAAG--TTATAAGAAA-GC-TA--TCAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CACG--CAA-TAT--TTACGT--AAATATCCGAACAT--TCAA-GGCAATAC---------------A---AT--TTCG-C-ATT-TTAAACA-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATG-ACC--TCAC-A-TGAT-ATG---CAGCTTTCC---TATATTG---A---------A-GTGTTTTTATTCA-TGTAAAT--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAGCAGC--GTG-CGCGGC
gi|10 : gatccactatgatttgcggacttT-GTTCTTCAAACGTTTGT--GTTTGTATTG-TTAAAATCTTAAGGAA-TT-TG--TTCACATTTTGGT-A-AGG-CTTGTG-----C--AAT---AT--TT--A--C-----------------------------TG--CAA-CATCTTTATGT--AAATAT------A-----AA-G---ATATATG------------A---AC--TAGGAC-ATT-TTAAAAAGA----CG-TATT-GATA--TCGATATGGATCTAG-AACGTAAGGTT-A--G-CCCTAA-TGAA-ATG---TAACGTTCG---TGTACTA---ATTATAATTGATGCGCCTTTATTCA-CATAAA---CAG-CGTACACTCTACC-------TAA----T-C---------ACGC--GC--AA-TA-CGAA-CTGGCA--CTACCGGC--GCG-CGCGGC
gi|11 : CACCACAATCT-----TAA-TTTATGCTTCAAAATTTTGCTCGGTTGTGTCAGTTAGGTTTTTAAGAAAAGC-TAATCAAATATTTTGGTTACAAG-TGTGTGTG-AACCAACCAAAGTCGTT--A--C-GGT------------CTGTAAATCAGCATGACCAAATAT--TTACGT--CAAAATCCGAACATCCTCAAGGCCAATACAATT-----------AATCAT--TTCG-C-ATT-TT--AAG-A----TG-TCTT-TTTAAGTTACAATCGAT--AA-AATGT-AGATT-ACCT-TCACAA-TGAT-ATAGTTTAGCTTTCC---TTCGTTAGATA---------A-GTGTTTTTAgctctta
gi|12 : ttgtcTTGGGTTTTTACAGTTTGGGA----------------------TTTTTAAAAGTCTATATTCTTTATTCTTTAGTT---TA-TCGCAT-CGTTTAT--TC--AT-TTTAGT-ATTTACTTATTCGTATCCGATC--AGT-AGCT----G--TCAATGTGCAAGT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GCAAATATAACGTC-TCCTAGCATATCATATAAA--TGT-A---CTCGTATGCATATTGAATGC-ATT-CAAATACTT-TCTAAGTTTATCT------GAATACGAAATT---------TTTCAAATTCAGTTTTGAATACCATTA--T-GTTGCA----TA
gi|13 : ATAA-ACTACATGTCA-TATCAAAAATCTGTTCA-A-AAAATCGTTC-ACACGTAATCTAAAAT-CCTATTTCT-A-AAACCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAA--ATAACC-CA----A------AACC---T-TT-AC-TATCA-GAC-A-TTTTGAA-AGAGTA-ACTTT---AA-ACGTTATGACACACAATCTCATTAATATAACCGCTAT-GAAT-ATT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-TTCAGTATC---TTTTCTTTAAGT----A-TAGTTATTTTCATTTC-AAAACCA
gi|14 : T-A-AAGATGTGCGTGTTAC--GTT---ATCGTT--A--CCAGTACATGTACACGCCTA--------CATG--CAA-TAT--ATAT-C--AAATATCACAATAT--TCAA-GCTAATACATGTTA---------G---ATAATTCA-CGATT-TTGCAAA-A----TA-CGTT-GATA--TCAAAATGCAT--AG-A----AAAACT-ACCG-TCAAAA-TGAT-ATG---TAACTTTTG---TATAGAA---A---------A-GTA-TTTTGCTCA-TATAAAA--CAG-CGTACATGCTGCC------GTAA----T-G---------ATCT--GGAAAA-AA-ATTGTTTAACA--CCAACAGC--GTG-
gi|15 : ATCAGAATTT-----TG--CT-ATCCTGCCAAATTGTAG--GTTTTTGTTA-T-AG--T-----GA-----------TGACATATTCAT-A-ATA-TGTCTATATTAC--ACT---CTCCTTGTA--TCTGT------------CTA--------CATA--CGA-TAA--TTGTGA--AAATGTAGAAATAG--TCAA-GCCAATATAGGCCTACATACAAAA---AT--TTCA-C-ATTCTTAAAAA-A----T---ATT-GCTA--TCAAAATGGAT--AG-GATGT-AAATT-ACT--TCAAAAGTGAT-ATG---TAACCTTCG---TGTATTA---A---------A-
gi|16 : TCG-C-ATT-TTAAAGA-AGTA-TAATATT-GATA--TTGAAATGGAT--AT-AATGTCAAATT-ACCG-TAAAAA-TGATAATG---CAACTTTCC---T---------------------GTGTTT------------AAA--CAG-CGTAAATGCTACC------ACAATCCTT-T---------GTACGTGT--AATTA-CGTA-TTGACA--CCAATAGC--GTG-actgcgcaaatgttacgt
gi|17 : TTTTTTTTCTT-CTCAACTCTTGGGTTGGT-TGATTGGGGAGGAGGGTTGTGTGTTTGGTTGTTTTTTA---GTCTAGT-TCTTTATTCTTTTATT---TG-TTGCA-CCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAAatga
gi|18 : TTAATTTAA--CAAAAACC---GTTTACTCGGT--ATAACC-AA----AGTTATTAACCAAACATC-AT-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTAACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|19 : CAATCTCATTAATATAACCGCTAT-GAAT-AAT-TCACATA-TCAGG-CACGTA--TGAT-ACAT-TAT-T----TATC---TTTTC-TTAATTAAGAA-TAGTTATTTTCATTTC-AAAACCATTTAT
gi|2 : TTTTTTTGTTGTATG-TCG-ATTTGCTTAT--TATTATCTTTA---ATTTAATT-------------CTCGGT-A--T----GA-TCA----GTA-GC-TATCAG-----CTGGCATATTTGTA-ATTTGTAAATA--ACGAT-TTTTAACATATCATACAAACCTGTCA---CTTGTAT-----TC-AATGTTATTACTAATATTTCTCTGAGGTTATTTTCAAAAGAAACA-----T---------TTTGAAATTTAATTT--GAT-TCATTG--TTGTGGCA----TA-TTG--TGT-TGAT-G---TATTACCAC-ACATAGTAACGCTGTTTTAGTTTA-AAAAGCTAACATTTTCATATAATA--TA-CGTGTATTTC--GAGAC-TC-AG-TACCAGTG---C-TAATAATTCACCGCTGCTGTAAAT-TA---GTC-------TCTC--T--TTTT-ACCGTCC-TG----ACAC--AC--TGTTGACCCAACATTTTTTTT-TTCTTTTGCAATTTTC--TAA-T-TGCCTAGAATGCAAC--CATTTTGAC-TTAAAGA-AACATACTTTTTTTTCAAGACT-GCACGGTTGAAGAGAAAA---AAAAATT-----AGTTGTCCTAA-T-TTGTGCT----AATTGAATAT---CC-GTTATCGCGACGATTAG-TTTATAAGACA---TATTATTACAATTGCAA-TTACGTATTACAGTTTCACGG-GCACGTC-GTGGCAATTCCCAAAT----TATTGAACCTCTGGTACAAAA-ATTTGTTCAAAAC--CA--AACAAATT-TT-AATTGAAT-AATTCCTCGGAATTTCCTGTCGCG-ATCGCAA---AACCT---TT-------CTCCGTAAATGTATATCTTTAAATG-GTGTAATG------------CTAC-ATGTATTACA-TTTCTTAAA--TGACTACTTGGATTCACATGCAATATCGT---AAT-T-ATGCCTGTG---ACGTCGTGAACGTC--CAATCAGCACTGGTGACCGCCAT-AGGT--TACA-TGC------------GTAACGCTTGAC--TATAA-ACTAAAT-----TGCC---------TCCA-GCAAA-TCATTCAACAA--AA---AAAAA-C--ATTTCT-ATGAATCTCGTTTTAATTTAA--AACAACCCAGTGCTAATTGAATTCATAACCACACACTA-----TAGTC---AATT-AT-AGTCA-GAC-ATTTTTGAACAG-ATAGGCTTGAAAAA-AGACTGTGGCAC-CAATCTCATTAACATAAGCGC-ATCGGAT-AATGCCACACG-CCAAGCCACGTA--TGACAACAGATAT-T----TATCACTCTTTC-TTTAGT----CTTGGTTA--TTCATTTCAAAAACCATTTATCGA-ATATAATTCCAAATGTT-GATATCATAATTAAATT--CAGCAAATACAC-CACATAT
gi|20 : AATCGAT--AG-AATGTAAAATT-ACCG-ACACAA-TGAT-ATG---TAGCTT--C---TATATTG---A---------A-GTGTTTTTAATCC-TCTTAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--acatgt
gi|21 : tacTTTTATTCAGTATAAAGAGCAGGCGTAGATGCTACCGGCGCAGTAA----TCGATACCGGCTGTAC--GT--AATTACCTTA-TTGACA--CAAACAGCAAGTGACGCGAC
gi|22 : --TTTTAAGAAT-GT-TA--TGAACATATTGGT-A-A---TATCTGTGCGAC--AT-----TCATT--AATTCA--------------CTA--------CATG--CAA-CAG--TTACGTAAAAATATCAAAATAC--GTAA-G
gi|23 : -G-GCAGGGT-GAGCC-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CC--GACGAATTGTT-CACTAAGTCAACTC----AAATTTCCAGTGTTG-AT---GA---Agt
gi|24 : -GCAGGGT-GAG-C-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CC--GACGAATT-TTTCACTAATTCAACTC----AAATTTCCAGTGTTG-AT---GA---AA
gi|25 : T-------------C--AAT-AGCT----C--TCAATGTGCACGT-GATTAG-GCCTCTAGTA-ATTTGTACCT--ATAAATATAACATT-GCTTAGCATATCATA-AAA--
gi|26 : a-AATGCCAACTT-ACCG-TCGCAA-TGAT-ATA---CAGCTTTCC---CATATTA---A---------A-GTGTTTT
gi|27 : AA--TTTTAAGAAT-GC-CA--TGGACATTTTGGT-A-A---TATCTGTGTGAC--A-----GTCTTT--A--Cagtc
gi|28 : AC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACA----------------------CTAT-GAAT-AAT-CCACGTA-ttaa
gi|29 : G-TTT-TAAGATAG--TG--ATT-CAGTTTCAAGTTACGTATTACA--TTTAC-G-GCACG
gi|3 : aTTTTTTA---GT-TGG--T-TTTCTT--TTTGTT---TGATTGCATTCGTTTAAAATA--AA-ATAAGTCATTTACTTATTCATATCCGATC--AGT-AGC-----GATTTAATGCGCA-TTTGCTTGGAGCCTCT----------T---T--GTAAATATAACGTT-C-TTAACATATGAAA-ATA--TAT-ATTACTTGTATGTATCTCCAATAC-AG--CTAATACTT-CATGAGTTTATC-------GAA--------TACGAAATATTTTAAAATTCAAATTTGA-TATCATTA--T--TTG-A----TAATTG--T-T-TAATTG---CATCACA-C-A-ATAGTAA-GTC-TTTTAGTTTTTAAA-GTCAGTATTT-CATCTAACA--TAACGTGTATT-----AAATGTA-AGATACCAGT----A-CAATA-TTCACC-----------CGTA-ACGTCAAATA-GTTTC--TCATTTTGAC--TC-GTG----ACCA-GAACGTGTTGAC-----ATCTG--TT-TT-TGCTGGAATTTT-G-TAA-TGTGT-AGGAGTGCATA--TATTTTGAAGTTAAAGAGAA-AAA---TCTTTTCAAGACATGCACATTT-A-GA---AA---AATCTTT-----AGTTGTCTTGAAT-TTGTGTA----TATAGAAT-T---GC-TTTA-TG-GACGATTGG-TTT-TAAGATAG--TT--ATT-CATTTTCA-GCAACGTATTACA--TT-AC-GCACACG-T-GTGAC-ATTC----CCGGTCTGTTGAG-CTCCCGT----AG-ATTGTCTAAAAAA--C---GAAAAATT-TT-AACTGAATCTACTC----AAATTTCCTGTCATGAAT---GA---AATTT-GATTTGCA-CATTCTCTAAATG-ATA--TT--AATGCGTGC-ATA------------TTAC-ATATA-TACATTTT-TTGAA--TTAC-A--T-GACTCA-ATG-AATATCGTA-A----T-AT--CTGAG---ACGTTTTGAACG-CAAAAATTATCACT-GTGAC--ACATAAGGTATTACATTAC-AAATT-ATTT-GTAAC-GTTGAC--TATAA-ACTACATGTTGCTGTTAAAA-----TTC--------TTGTT---CAAGTAATCCAAAAA-CCTATTTCTAA-AAATTC--CTTTAATTTAAACCAC-ACCC---GTTAA
gi|31 : tgtAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGGCA--CCAACAGC--GTG-CGCGACtagtccagtccaatttgtcaaccaaacctcaagaaaatttgcaacacaag
gi|32 : TCTGTG----GCAT-GAC-GTGTTGAC-----ATTCAA-TT-TT-TGTTGCAgtc
gi|4 : ---------TTTCAAATCCA--TTTGTAAATTATTAAAT-GTTGTAGTCTTAGTTAAATGTATAATAGAAATATCATAAACA-ATTTTAA-TTTGTTTTCCATCA-TAA-ACTAATATTG-CATATGATCATTA-AATGTTGATA--AAAATGTACAG-TA--ATCG---T-TAATA-T--AACGTT-C-GTCA-C-TAGACGTCAA-----------T--TTTC-AC-ATGTGTGTGAGACATAGACGCTGTTGA------ATTTATCTT-TT-TGGTGGGATTT--GATAAAT-TTT-TTCATTGCCTAAATATCTTGGA-GAACAGATAA-AT----CTTTTTCAAGA-ATGCACA-----AGA---AATGCGACATTCCAAAAAATC--CTTTA-TATTCTGTTCCGCGATGAAATATATGGCATTCA-CG-AATGGTTGAATTT-TTACATAGGCTA--TTA-CAATTTCAA-TGACATAATGAA--GTTAA-G-AGAAGGTAGTGAC-ATTT----AA----TGTTGAT-CTGC-GT----A--ATTGGCT-AAAAA--CCAGAACAAATT-TT-CATAAAATCAACTT----AAACTT-TTGTT-CG-AA---CACCGAATTTCGA-TTACACCATTT--TAAAT--ATA--AT--AATG-TTTT-ATAACCAAGAGAAACTTACAAAAAATTACT-TAC-TTAAAATTGGC-A--TCAATTTA-GTACAGT-TCCTA-A----T-AA--CGATGAATATGTTTTT-ACGTC--AAATAA-CATTGGTGAC--ACAC-AA----CATATTTCGATATCAA--T-GTAAA-TTGGACGTTATAATACTACATATTA-
gi|5 : aattcaatataatagcAACTCATT--ATAAAC-CA----A-----AACCC---CATTTACCTATCAAGACCA-TTTTGAA-AGTG-A-ACTT----AA-CCGTTGTGACACACAATCTTATTACCATAAC-GATAT-GAATTAAT-CCACATAATCAAG-CACGTGAGTGAT-AAAA-AATAT----TATC---TTTTC-GTAAGT----A-T-TTTATTTTCATTTTTAAAACCACT-ATC-AGAAATTAATTCAAATTTTTAATG----AAAT--ATTGCCAG--AATTC-CTCACACATAACC-AATGTA-CTACAAACGTATGCATTAA--TGCCTATTTCTACACGTTAAGGTTTGATCTACACC-TCCAATTCTGCCACTCTGAATCAGCGT-TACTGCATA--CTGATTAAGATGACATCATAATTTTAATA-TGTACAT-ATCAACATCAAAATCT-----AAA-TT-AATCTGCAAAATTT-GT--GTT-GTATTA-TTAA--TTTTAAGAAA-ATATA--TTAACATTT-GGT-A-AAG-TGTGTGTG--AC--GCT---GTTGTT--A--C--GA------------CTA--------CAGG--CCA-TAT--T-ACGT--AAAAATCCAAACAT--TCAA--CCAA-ACATG------------A---ATA-TTTG-C-AGT-TTAAAAAGA----TT-TATTTGATA--TCAAAATGGAT--AGGAATGTAAAATTTACCGGTCACAA-TGAT-ATA---TAATTTTCGGTGTATATAA---T---------A-GTGTTTTTAT-CA-TGTAAGA--CAG-CGTAG-TGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TCGACACCCCAACAGC--GTG-C-CGGatatttaccattctaaaa
gi|6 : -AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTT---TTTACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-GCAG-AAT-T----TCTC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTA-AAAACCACTTATCGACATATGAATTCAAATTTTCGATA----AATA--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTAATGGCCTA--TATTCC-ACACGTTAAGGTTT-ATCTACACCGCCC--TTCTTGCATTTTGTGTCAACGTCTACAG------C--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAGTCT-----TAA-TT-ATTCTGCAAAATTTTAT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TCAACATTTTGGT-A-AA---GTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TTT--TTACGT--AAATATCCAAATAT--TCAA-GCTAATACAATT-----------AAT-AT--TTAG-C-ATT-TTGAAAG-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TA---------------------------TATTCA-TATAAAA--CGG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-CTAACA--CCAACAGC--
gi|7 : T-CTCAACTCTTGGGTTGTT-TGATTGGGGAGGGGGG-------------TGTTT------------G--TTTTTAGTCTTTTGTT---TG-TTGCATT-GTTTAT--TT--AT-TTT
gi|7 : TCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-ATAGTAA-GTTG-TTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CGAGTATTTTTAAAAACGTA-AG-TACCACTGAGTA-TAA-A-TTCACCGTCAC-GTCAACGTA-ACGTCAAATTAGTCTCTTT--TTTT-AC-GTCTGTG----ACAT-GA-CGTGTTGAC-----ATTCAA-TT-TT-TGTTACAATTTT-G-TAT-T-TGT-TACAGTGGATA--TATTTTGAA-TCAGAGA-AA-ATC---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaaattcagttttgaatatcattatgttgcataattgtgttgattgtatcacaagaatagtaagttgtttagtttaaaagccgatatttcatctaatgtgcgagtatttttaaaaacgtaagtaccactgagtataaattcaccgtcacgtcaacgtaacgtcaaattagtctctttttttacgtctgtgacatgacgtgttgacattcaatttttgttacaattttgtatttgttacagtggatatattttgaatcagagaaaatcttttttcaagacaagcacatttaagaaaaata
gi|8 : tctcaactcttgggttgtttgattggggaggggggtgtttgtttttagtcttttgtttgttgcattgtttatttattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAA
gi|8 : gcac-GTCAACTTA-ACGTCAAATTTGTCTCCTT--TTTT-AC-GTCTGTG----ACA--G--CGTGTTGAC-----ATTCAATTT-TT--GTTGCAATTT-AG-TAA-T-TGT-TAGAGTGGATA--TATTTTGAA-TTAAAGA-AA-ACA---TTTTTTCAAGACAAGCACAATT-AAGA---AA---AATATTT-----AGTTGTCTTCA-T-GTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGGAAGGTATTACA--TTTAC-G-GCATGGT-GTGAC-ATTC----AG----TGTTGA--TACC-GT----AC-ATAGGCTAAAAAAACCC--GACAAATT-CT-AACTGAATCAATTT----AAATTTCCTGTCGCG-GT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGAGTCA-ATG-AATATCGT----ATCT-AT--CTGTG---ACGTTTTGAACGTC--AAACCATCACT-GTGAC--ACAT-AGGT-CTACATTGC-ATAatttgtctccttttttacgtctgtgacagcgtgttgacattcaatttttgttgcaatttagtaattgttagagtggatatattttgaattaaagaaaacattttttcaagacaagcacaattaagaaaaatatttagttgtcttcatgtgtgttaattgaatagctgtacggacgattggttttaagatagtaattcaatttcaaggaaggtattacatttacggcatggtgtgacattcagtgttgataccgtacataggctaaaaaaacccgacaaattctaactgaatcaatttaaatttcctgtcgcggtgaaatttggatttgcacattctgtaaatgatatttaaatggtgtacattacatatattacatttttaaatgacattgagtcaatgaatatcgtatctatctgtgacgttttgaacgtcaaaccatcactgtgacacataggtctacattgcata
gi|9 : gcaccatttattaattttagtatctacttaTATTATCAACATCGCAATCTACTAGTAAACT-ATTCTGCAAAAATTTA-----------CA-TTAG--TTTTAAGAAA-GC-TA--TTCACATTTTAG--A-AAA-TGTGTGTGTAAC--ACT---GCCGTT--A--CTGGT------------CTA--------CATA--CAA-TAT--TTACGT--AAATAGCCGAATCT--TTAA-GCAAA------------------A---AT--TCAA-T-ATT-TTAAAAA-AAAGGTT-T-TT-GATA--TAGAAATGGAT--AT-AATGTTCAATT-ACTG-T-AAAC-TGAT-ATG---CAACTTTTG---TAGAATA---A---------A-GTGTTTTTATTCA-TATAAAA--CTG-CG-AGATGCTACT------TTAA-----------------------C--AA-TA--------GACA--CCAACAGC--ATG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATAGTCCAGTCAATTTTTCAACCAACCTCAAGAAAATTGCAACACAA
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 1 11 5555555555555 2222 22222222222 111 8888888888888888888888888888888 1 11 111 1 11 11111 1 11 1 222222222222222222222222 1111 11 111 1 111 1111 2222 1 1111 1 2222 11 1111 111111 11111 11 11 1 1111 111 111 22222 1111 22222 1111111111 11 1 1111111 1111 111 111 1 11 11 444444444444 11 1111 2 4444444 11 11111 11 1 11 11 333333333333 11 11 22222 22222222 11 1 111 11 11 111 11 44444444444 22222 1111 1111 111 111111 1 1 2222 11 11 11 111 222 4444444 1 1 1 11 333333333 1 11111 111 11 111 11111 3333333333333333 11111111 5555555555555555555 11 1111111 1111111111111 1111111 2222222222222222
lowQualScore : 3 3 22 2 0 5555555555555 4444 3 00000000000 111 6 0 1 77 999 5 6 0000000000000000000000000000000 1 6 8 8 3 8 5 666 11 0 555 1 6 11 88888 22 3 8 0 33 0 222222222222222222222222 1 3 99 6 1 4444 3 11 8 6 444 999 8 6 8 0 8 8 8 222 8 6 5555 8 8 1 3333 0 8 0 4444 3 0 6 7777 99999 55 77 0 2222 666666 44444 00 5 00 6 6 6 6 1 99 6 3 6 4444 7 7 6 111 111 00000 1 8 8 7777 1 55555 8 0 8 8 6 6 999999 6 6 1 99 1 5 5 1 0 5 3 5 9999999999 99 1 7777777 1 6 77 888 2 5 77 2222 6 5 000 000 5 0 0 8 3 8 11 11 8 8 111111111111 8 0 8 8 11 8 3333 8 0 0 3333333 8 11 55555 0 0 11 5 0 11 8 66 0 000000000000 00 33 8 3 888 3 33333 55555555 22 2 3 0 0 2 111 33 11 0 0 444 11 8 33333333333 66666 6 6 6 5 5 5 1 5 6666 5 99 2 2 5 5 5 5 6 99 6 6 6 4444 111 6 555555 1 3 0 2 8 0 2 1111 33 33 33 444 6 7 333 1 3333333 3 3 3 88 6 000000000 3 7 6 1 66666 6 5 111 1 5 1 22 4 4 66 1 4 4 222 77 55 33333 55 55 0000000000000000 66666666 66 4 66 66 33 666 4 0 3 7777777777777777777 11 0 4 4 4 8 9999999 0 4 66 0 55 3 6 3 55 0 3 3 666 7777 11 11 8888888888888 3 4 777 4 2222222 1111111111111111 55 66 8 4 4 66 66 5
lowQualScore : . . .. . . ............. .... . ........... ... . . . .. ... . . ............................... . . . . . . . ... .. . ... . . .. ..... .. . . . .. . ........................ . . .. . . .... . .. . . ... ... . . . . . . . ... . . .... . . . .... . . . .... . . . .... ..... .. .. . .... ...... ..... .. . .. . . . . . .. . . . .... . . . ... ... ..... . . . .... . ..... . . . . . . ...... . . . .. . . . . . . . . .......... .. . ....... . . .. ... . . .. .... . . ... ... . . . . . . .. .. . . ............ . . . . .. . .... . . . ....... . .. ..... . . .. . . .. . .. . ............ .. .. . . ... . ..... ........ .. . . . . . ... .. .. . . ... .. . ........... ..... . . . . . . . . .... . .. . . . . . . . .. . . . .... ... . ...... . . . . . . . .... .. .. .. ... . . ... . ....... . . . .. . ......... . . . . ..... . . ... . . . .. . . .. . . . ... .. .. ..... .. .. ................ ........ .. . .. .. .. ... . . . ................... .. . . . . . ....... . . .. . .. . . . .. . . . ... .... .. .. ............. . . ... . ....... ................ .. .. . . . .. .. .
lowQualScore : 3 2 00 5 2 0000000000000 6666 2 11111111111 777 7 7 7 99 777 7 7 9999999999999999999999999999999 0 0 0 0 8 0 6 444 00 8 888 4 0 00 55555 88 0 8 0 22 0 555555555555555555555555 0 7 22 7 0 2222 8 00 0 0 000 888 0 0 0 6 0 0 0 444 0 0 8888 0 0 0 0000 6 0 8 5555 2 8 7 2222 33333 88 77 1 1111 999999 33333 11 7 77 7 7 7 7 0 22 7 3 7 8888 8 5 7 777 777 00000 0 0 0 0000 0 44444 0 6 0 0 7 7 777777 7 7 0 22 7 7 0 4 7 7 6 7 7777777777 33 4 6666666 0 6 99 666 7 7 00 1111 6 7 000 000 0 8 8 0 8 0 00 22 0 0 000000000000 0 8 0 0 00 0 4444 0 0 8 8888888 0 00 00000 8 8 00 6 0 00 0 22 8 666666666666 88 88 0 2 222 2 88888 00000000 55 5 2 8 0 5 000 88 00 8 6 000 00 0 88888888888 00000 7 7 7 7 7 7 7 7 6666 7 11 2 5 0 0 0 0 7 22 7 7 7 2222 777 7 888888 7 3 8 5 8 2 8 2222 88 88 88 000 7 3 333 0 0000000 3 3 3 33 7 333333333 3 3 5 0 77777 7 7 444 4 7 7 22 4 4 11 0 0 0 111 99 55 22222 55 55 7777777777777777 11111111 11 4 11 11 88 999 4 2 2 4444444444444444444 99 1 4 4 4 9 0000000 8 4 11 7 55 6 6 6 00 5 6 6 444 7777 77 44 6666666666666 6 4 111 4 9999999 9999999999999999 55 11 9 4 4 11 11 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAAANA-----TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTGAG--TAATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT--AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CC--GACGAATT-TT-AACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
Reference ( family-5838 ) : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----T------GAA--------TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTGA---TAATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT--AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CC--GACGAATT-TT-AACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
gi|1 : TTTTTTTTCTTTCTCAACTCTTGGGT-GTT-TGATTGGGGAGGGGGG-------------TGTTTTTT----GTCTAG--TCTTT----TTTTGTT---TG-TTGCATTCGTTTAT--TT--AT-TTTAGT-ATCTACTT-------------T--AGT-AGCT----G--TCAAAGTGCA-GT-GATTAG-GCCTCTAGTA-ATT-GTACAT--GTAAATATAACATTGCTTTAGCATATCAAA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTAAGTTTAT-------------------------TTTTAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-AT-GTAA-GTTGTTT-AGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CG-GTATTTT--AAAACGTA-AG-TACCACTGAG--TAA-A-TTCACCGTCAC-GTCAACGTA-ACGTAAAAT--GTCTT--T--TTTT--AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCATTTTGTT-TGTTACAATTTTTGTAA-T-TGT-TAGAGTGGATA--TATTTTGAA-CTAAAGA-AA-ATA---CTTTTTCATGACAAGCACATTT-AAGA---AA---AATATCT-----AGTTGTCTTCA-T-TTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TG--GCT-CAATTTCCAGTAAGGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AG----TGTTGA--CTCC-GT----AG-ATAGACCAAAAAA--CC--GATTAATT-CT-AACTGAATCAATTT----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------CTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGATTCA-ATG-AATATCGTATAAAT-TTAT--CTG-----ACGTTTTGAACGTC--AAATCGTCACTG---AC--ACAT-AGGT-CTTCATTGC-ATATC-A--TTGTAAC-TTTGAC--TATAA-ACTACATGTCA-TATCAAAAGTCTGTTCATA-AAA-TCGTTC-ACAAGTAATCTAAAAATCCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A------AACC---T-TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTA---AA-ACGTTGTGACACACAATCTCATTAATATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CAAGTA--TGAT-GAAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAGCATTTATCGACATATGAATTCAAATTTTGGATA----AATT--ATT--CAG--AATTC-T-CACACATGTCCGAATGTATCTACAA---TGCGTACTA----G--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATACGC--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TAAG--TTATAAGAAA-GC-TA--TCAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CACG--CAA-TAT--TTACGT--AAATATCCGAACAT--TCAA-GGCAATAC---------------A---AT--TTCG-C-ATT-TTAAACA-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATG-ACC--TCAC-A-TGAT-ATG---CAGCTTTCC---TATATTG---A---------A-GTGTTTTTATTCA-TGTAAAT--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAGCAGC--GTG-CGCGGC
gi|10 : gatccactatgatttgcggacttT-GTTCTTCAAACGTTTGT--GTTTGTATTG-TTAAAATCTTAAGGAA-TT-TG--TTCACATTTTGGT-A-AGG-CTTGTG-----C--AAT---AT--TT--A--C-----------------------------TG--CAA-CATCTTTATGT--AAATAT------A-----AA-G---ATATATG------------A---AC--TAGGAC-ATT-TTAAAAAGA----CG-TATT-GATA--TCGATATGGATCTAG-AACGTAAGGTT-A--G-CCCTAA-TGAA-ATG---TAACGTTCG---TGTACTA---ATTATAATTGATGCGCCTTTATTCA-CATAAA---CAG-CGTACACTCTACC-------TAA----T-C---------ACGC--GC--AA-TA-CGAA-CTGGCA--CTACCGGC--GCG-CGCGGC
gi|11 : CACCACAATCT-----TAA-TTTATGCTTCAAAATTTTGCTCGGTTGTGTCAGTTAGGTTTTTAAGAAAAGC-TAATCAAATATTTTGGTTACAAG-TGTGTGTG-AACCAACCAAAGTCGTT--A--C-GGT------------CTGTAAATCAGCATGACCAAATAT--TTACGT--CAAAATCCGAACATCCTCAAGGCCAATACAATT-----------AATCAT--TTCG-C-ATT-TT--AAG-A----TG-TCTT-TTTAAGTTACAATCGAT--AA-AATGT-AGATT-ACCT-TCACAA-TGAT-ATAGTTTAGCTTTCC---TTCGTTAGATA---------A-GTGTTTTTAgctctta
gi|12 : ttgtcTTGGGTTTTTACAGTTTGGGA----------------------TTTTTAAAAGTCTATATTCTTTATTCTTTAGTT---TA-TCGCAT-CGTTTAT--TC--AT-TTTAGT-ATTTACTTATTCGTATCCGATC--AGT-AGCT----G--TCAATGTGCAAGT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GCAAATATAACGTC-TCCTAGCATATCATATAAA--TGT-A---CTCGTATGCATATTGAATGC-ATT-CAAATACTT-TCTAAGTTTATC-----T------GAATACGAAATTTTTCAAATTCAGTTTTGAATACCATTA--T-GTTGCA----TA
gi|13 : ATAA-ACTACATGTCA-TATCAAAAATCTGTTCA-A-AAAATCGTTC-ACACGTAATCTAAAAT-CCTATTTCT-A-AAACCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAA--ATAACC-CA----A------AACC---T-TT-AC-TATCA-GAC-A-TTTTGAA-AGAGTA-ACTTT---AA-ACGTTATGACACACAATCTCATTAATATAACCGCTAT-GAAT-ATT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-TTCAGTATC---TTTTCTTTAAGT----A-TAGTTATTTTCATTTC-AAAACCA
gi|14 : T-A-AAGATGTGCGTGTTAC--GTT---ATCGTT--A--CCAGTACATGTACACGCCTA--------CATG--CAA-TAT--ATAT-C--AAATATCACAATAT--TCAA-GCTAATACATGTTA---------G---ATAATTCA-CGATT-TTGCAAA-A----TA-CGTT-GATA--TCAAAATGCAT--AG-A----AAAACT-ACCG-TCAAAA-TGAT-ATG---TAACTTTTG---TATAGAA---A---------A-GTA-TTTTGCTCA-TATAAAA--CAG-CGTACATGCTGCC------GTAA----T-G---------ATCT--GGAAAA-AA-ATTGTTTAACA--CCAACAGC--GTG-
gi|15 : ATCAGAATTT-----TG--CT-ATCCTGCCAAATTGTAG--GTTTTTGTTA-T-AG--T-----GA-----------TGACATATTCAT-A-ATA-TGTCTATATTAC--ACT---CTCCTTGTA--TCTGT------------CTA--------CATA--CGA-TAA--TTGTGA--AAATGTAGAAATAG--TCAA-GCCAATATAGGCCTACATACAAAA---AT--TTCA-C-ATTCTTAAAAA-A----T---ATT-GCTA--TCAAAATGGAT--AG-GATGT-AAATT-ACT--TCAAAAGTGAT-ATG---TAACCTTCG---TGTATTA---A---------A-
gi|16 : TCG-C-ATT-TTAAAGA-AGTA-TAATATT-GATA--TTGAAATGGAT--AT-AATGTCAAATT-ACCG-TAAAAA-TGATAATG---CAACTTTCC---T---------------------GTGTTT------------AAA--CAG-CGTAAATGCTACC------ACAATCCTT-T---------GTACGTGT--AATTA-CGTA-TTGACA--CCAATAGC--GTG-actgcgcaaatgttacgt
gi|17 : TTTTTTTTCTT-CTCAACTCTTGGGTTGGT-TGATTGGGGAGGAGGGTTGTGTGTTTGGTTGTTTTTTA---GTCTAGT-TCTTTATTCTTTTATT---TG-TTGCA-CCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAAatga
gi|18 : TTAATTTAA--CAAAAACC---GTTTACTCGGT--ATAACC-AA----AGTTATTAACCAAACATC-AT-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTAACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|19 : CAATCTCATTAATATAACCGCTAT-GAAT-AAT-TCACATA-TCAGG-CACGTA--TGAT-ACAT-TAT-T----TATC---TTTTC-TTAATTAAGAA-TAGTTATTTTCATTTC-AAAACCATTTAT
gi|2 : TTTTTTTGTTGTATG-TCG-ATTTGCTTAT--TATTATCTTTA---ATTTAATT-------------CTCGGT-A--T----GA-TCA----GTA-GC-TATCAG-----CTGGCATATTTGTA-ATTTGTAAATA--ACGAT-TTTTAACATATCATACAAACCTGTCA---CTTGTAT-----TC-AATGTTATTACTAATATTTCTCTGAGGTTATT-----TTCAAAAGAAACA-----TTTTGAAATTTAATTT--GAT-TCATTG--TTGTGGCA----TA-TTG--TGT-TGAT-G---TATTACCAC-ACATAGTAACGCTGTTTTAGTTTA-AAAAGCTAACATTTTCATATAATA--TA-CGTGTATTTC--GAGAC-TC-AG-TACCAGTGC---TAATAATTCACCGCTGCTGTAAAT-TA---GTC-------TCTC--T--TTTT--ACCGTCC-TG----ACAC--AC--TGTTGACCCAACATTTTTTTT-TTCTTTTGCAATTTT-CTAA-T-TGCCTAGAATGCAAC--CATTTTGAC-TTAAAGA-AACATACTTTTTTTTCAAGACT-GCACGGTTGAAGAGAAAA---AAAAATT-----AGTTGTCCTAA-T-TTGTGCT----AATTGAATAT---CC-GTTATCGCGACGATTAG-TTTATAAGACA---TATTATTACAATTGCAA-TTACGTATTACAGTTTCACGG-GCACGTC-GTGGCAATTCCCAAAT----TATTGAACCTCTGGTACAAAA-ATTTGTTCAAAAC--CA--AACAAATT-TT-AATTGAAT-AATTCCTCGGAATTTCCTGTCGCG-ATCGCAA---AACCT---TT-------CTCCGTAAATGTATATCTTTAAATG-GTGTAATG------------CTAC-ATGTATTACA-TTTCTTAAA--TGACTACTTGGATTCACATGCAATATCGT---AAT-T-ATGCCTGTG---ACGTCGTGAACGTC--CAATCAGCACTGGTGACCGCCAT-AGGT--TACA-TGC------------GTAACGCTTGAC--TATAA-ACTAAAT-----TGCC---------TCCA-GCAAA-TCATTCAACAA--AA---AAAAA-C--ATTTCT-ATGAATCTCGTTTTAATTTAA--AACAACCCAGTGCTAATTGAATTCATAACCACACACTA-----TAGTC---AATT-AT-AGTCA-GAC-ATTTTTGAACAG-ATAGGCTTGAAAAA-AGACTGTGGCAC-CAATCTCATTAACATAAGCGC-ATCGGAT-AATGCCACACG-CCAAGCCACGTA--TGACAACAGATAT-T----TATCACTCTTTC-TTTAGT----CTTGGTTA--TTCATTTCAAAAACCATTTATCGA-ATATAATTCCAAATGTT-GATATCATAATTAAATT--CAGCAAATACAC-CACATAT
gi|20 : AATCGAT--AG-AATGTAAAATT-ACCG-ACACAA-TGAT-ATG---TAGCTT--C---TATATTG---A---------A-GTGTTTTTAATCC-TCTTAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--acatgt
gi|21 : tacTTTTATTCAGTATAAAGAGCAGGCGTAGATGCTACCGGCGCAGTAA----TCGATACCGGCTGTAC--GT--AATTACCTTA-TTGACA--CAAACAGCAAGTGACGCGAC
gi|22 : --TTTTAAGAAT-GT-TA--TGAACATATTGGT-A-A---TATCTGTGCGAC--AT-----TCATT--AATTCA--------------CTA--------CATG--CAA-CAG--TTACGTAAAAATATCAAAATAC--GTAA-G
gi|23 : -G-GCAGGGT-GAGCC-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CC--GACGAATTGTT-CACTAAGTCAACTC----AAATTTCCAGTGTTG-AT---GA---Agt
gi|24 : -GCAGGGT-GAG-C-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CC--GACGAATT-TTTCACTAATTCAACTC----AAATTTCCAGTGTTG-AT---GA---AA
gi|25 : T-------------C--AAT-AGCT----C--TCAATGTGCACGT-GATTAG-GCCTCTAGTA-ATTTGTACCT--ATAAATATAACATT-GCTTAGCATATCATA-AAA--
gi|26 : a-AATGCCAACTT-ACCG-TCGCAA-TGAT-ATA---CAGCTTTCC---CATATTA---A---------A-GTGTTTT
gi|27 : AA--TTTTAAGAAT-GC-CA--TGGACATTTTGGT-A-A---TATCTGTGTGAC--A-----GTCTTT--A--Cagtc
gi|28 : AC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACA----------------------CTAT-GAAT-AAT-CCACGTA-ttaa
gi|29 : G-TTT-TAAGATAG--TG--ATT-CAGTTTCAAGTTACGTATTACA--TTTAC-G-GCACG
gi|3 : aTTTTTTA---GT-TGG--T-TTTCTT--TTTGTT---TGATTGCATTCGTTTAAAATA--AA-ATAAGTCATTTACTTATTCATATCCGATC--AGT-AGC-----GATTTAATGCGCA-TTTGCTTGGAGCCTCT----------T---T--GTAAATATAACGTT-C-TTAACATATGAAA-ATA--TAT-ATTACTTGTATGTATCTCCAATAC-AG--CTAATACTT-CATGAGTTTATCGAATAC------GAAATA-----TTTTAAAATTCAAATTTGA-TATCATTA--T--TTG-A----TAATTG--T-T-TAATTG---CATCACA-C-A-ATAGTAA-GTC-TTTTAGTTTTTAAA-GTCAGTATTT-CATCTAACA--TAACGTGTATT-----AAATGTA-AGATACCAGT-A---CAATA-TTCACC-----------CGTA-ACGTCAAATA-GTTTC--TCATTTTG-AC--TC-GTG----ACCA-GAACGTGTTGAC-----ATCTG--TT-TT-TGCTGGAATTTT-GTAA-TGTGT-AGGAGTGCATA--TATTTTGAAGTTAAAGAGAA-AAA---TCTTTTCAAGACATGCACATTT-A-GA---AA---AATCTTT-----AGTTGTCTTGAAT-TTGTGTA----TATAGAAT-T---GC-TTTA-TG-GACGATTGG-TTT-TAAGATAG--TT--ATT-CATTTTCA-GCAACGTATTACA--TT-AC-GCACACG-T-GTGAC-ATTC----CCGGTCTGTTGAG-CTCCCGT----AG-ATTGTCTAAAAAA--C---GAAAAATT-TT-AACTGAATCTACTC----AAATTTCCTGTCATGAAT---GA---AATTT-GATTTGCA-CATTCTCTAAATG-ATA--TT--AATGCGTGC-ATA------------TTAC-ATATA-TACATTTT-TTGAA--TTAC-A--T-GACTCA-ATG-AATATCGTA-A----T-AT--CTGAG---ACGTTTTGAACG-CAAAAATTATCACT-GTGAC--ACATAAGGTATTACATTAC-AAATT-ATTT-GTAAC-GTTGAC--TATAA-ACTACATGTTGCTGTTAAAA-----TTC--------TTGTT---CAAGTAATCCAAAAA-CCTATTTCTAA-AAATTC--CTTTAATTTAAACCAC-ACCC---GTTAA
gi|31 : tgtAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGGCA--CCAACAGC--GTG-CGCGACtagtccagtccaatttgtcaaccaaacctcaagaaaatttgcaacacaag
gi|32 : TCTGTG----GCAT-GAC-GTGTTGAC-----ATTCAA-TT-TT-TGTTGCAgtc
gi|4 : TTTCAAATCCA--TTTGTAAATTATTAAAT-GTTGTAGTCTTAGTTAAATGTATAATAGAAATATCATAAACA-ATTTTAA-TTTGTTTTCCATCA-TAA-ACTAATATTG-CATATGATCATTA-AATGTTGATA--AAAATGTACAG-TA--ATCGT---TAATA-T--AACGTT-C-GTCA-C-TAGACGTCAA-----------T--TTTC--AC-ATGTGTGTGAGACATAGACGCTGTTGA------ATTTATCTT-TT-TGGTGGGATTTG-ATAAAT-TTT-TTCATTGCCTAAATATCTTGGA-GAACAGATAA-AT----CTTTTTCAAGA-ATGCACA-----AGA---AATGCGACATTCCAAAAAATC--CTTTA-TATTCTGTTCCGCGATGAAATATATGGCATTCA-CG-AATGGTTGAATTT-TTACATAGGCTA--TTA-CAATTTCAA-TGACATAATGAA--GTTAA-G-AGAAGGTAGTGAC-ATTT----AA----TGTTGAT-CTGC-GT----A--ATTGGCT-AAAAA--CCAGAACAAATT-TT-CATAAAATCAACTT----AAACTT-TTGTT-CG-AA---CACCGAATTTCGA-TTACACCATTT--TAAAT--ATA--AT--AATG-TTTT-ATAACCAAGAGAAACTTACAAAAAATTACT-TAC-TTAAAATTGGC-A--TCAATTTA-GTACAGT-TCCTA-A----T-AA--CGATGAATATGTTTTT-ACGTC--AAATAA-CATTGGTGAC--ACAC-AA----CATATTTCGATATCAA--T-GTAAA-TTGGACGTTATAATACTACATATTA-
gi|5 : aattcaatataatagcAACTCATT--ATAAAC-CA----A-----AACCC---CATTTACCTATCAAGACCA-TTTTGAA-AGTG-A-ACTT----AA-CCGTTGTGACACACAATCTTATTACCATAAC-GATAT-GAATTAAT-CCACATAATCAAG-CACGTGAGTGAT-AAAA-AATAT----TATC---TTTTC-GTAAGT----A-T-TTTATTTTCATTTTTAAAACCACT-ATC-AGAAATTAATTCAAATTTTTAATG----AAAT--ATTGCCAG--AATTC-CTCACACATAACC-AATGTA-CTACAAACGTATGCATTAA--TGCCTATTTCTACACGTTAAGGTTTGATCTACACC-TCCAATTCTGCCACTCTGAATCAGCGT-TACTGCATA--CTGATTAAGATGACATCATAATTTTAATA-TGTACAT-ATCAACATCAAAATCT-----AAA-TT-AATCTGCAAAATTT-GT--GTT-GTATTA-TTAA--TTTTAAGAAA-ATATA--TTAACATTT-GGT-A-AAG-TGTGTGTG--AC--GCT---GTTGTT--A--C--GA------------CTA--------CAGG--CCA-TAT--T-ACGT--AAAAATCCAAACAT--TCAA--CCAA-ACATG------------A---ATA-TTTG-C-AGT-TTAAAAAGA----TT-TATTTGATA--TCAAAATGGAT--AGGAATGTAAAATTTACCGGTCACAA-TGAT-ATA---TAATTTTCGGTGTATATAA---T---------A-GTGTTTTTAT-CA-TGTAAGA--CAG-CGTAG-TGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TCGACACCCCAACAGC--GTG-C-CGGatatttaccattctaaaa
gi|6 : -AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTT---TTTACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-GCAG-AAT-T----TCTC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTA-AAAACCACTTATCGACATATGAATTCAAATTTTCGATA----AATA--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTAATGGCCTA--TATTCC-ACACGTTAAGGTTT-ATCTACACCGCCC--TTCTTGCATTTTGTGTCAACGTCTACAG------C--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAGTCT-----TAA-TT-ATTCTGCAAAATTTTAT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TCAACATTTTGGT-A-AA---GTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TTT--TTACGT--AAATATCCAAATAT--TCAA-GCTAATACAATT-----------AAT-AT--TTAG-C-ATT-TTGAAAG-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TA---------------------------TATTCA-TATAAAA--CGG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-CTAACA--CCAACAGC--
gi|7 : T-CTCAACTCTTGGGTTGTT-TGATTGGGGAGGGGGG-------------TGTTTGTT-----TTTAG--TC-------TTTTGTT---TG-TTGCATT-GTTTAT--TT--AT-TTT
gi|7 : TCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-ATAGTAA-GTTGTTT-AGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CGAGTATTTTTAAAAACGTA-AG-TACCACTGAGTATAA-A-TTCACCGTCAC-GTCAACGTA-ACGTCAAATTAGTCTC--T--TTTTTTAC-GTCTGTG----ACAT-GAC-GTGTTGAC-----ATTCAATTT-TT--GTTACAATTTT-GTAT-T-TGT-TACAGTGGATA--TATTTTGAA-TCAGAGA-AA-ATC---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaaattcagttttgaatatcattatgttgcataattgtgttgattgtatcacaagaatagtaagttgtttagtttaaaagccgatatttcatctaatgtgcgagtatttttaaaaacgtaagtaccactgagtataaattcaccgtcacgtcaacgtaacgtcaaattagtctctttttttacgtctgtgacatgacgtgttgacattcaatttttgttacaattttgtatttgttacagtggatatattttgaatcagagaaaatcttttttcaagacaagcacatttaagaaaaata
gi|8 : tctcaactcttgggttgtttgattggggaggggggtgtttgtttttagtcttttgtttgttgcattgtttatttattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAA
gi|8 : gcac-GTCAACTTA-ACGTCAAATTTGTCTCCTT--TTTT--AC-GTCTGTG----ACA--G--CGTGTTGAC-----ATTCAATTT-TT--GTTGCAATTTA-GTAA-T-TGT-TAGAGTGGATA--TATTTTGAA-TTAAAGA-AA-ACA---TTTTTTCAAGACAAGCACAATT-AAGA---AA---AATATTT-----AGTTGTCTTCA-T-GTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGGAAGGTATTACA--TTTAC-G-GCATGGT-GTGAC-ATTC----AG----TGTTGA--TACC-GT----AC-ATAGGCTAAAAAAACCC--GACAAATT-CT-AACTGAATCAATTT----AAATTTCCTGTCGCG-GT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGAGTCA-ATG-AATATCGT----ATCT-AT--CTGTG---ACGTTTTGAACGTC--AAACCATCACT-GTGAC--ACAT-AGGT-CTACATTGC-ATAatttgtctccttttttacgtctgtgacagcgtgttgacattcaatttttgttgcaatttagtaattgttagagtggatatattttgaattaaagaaaacattttttcaagacaagcacaattaagaaaaatatttagttgtcttcatgtgtgttaattgaatagctgtacggacgattggttttaagatagtaattcaatttcaaggaaggtattacatttacggcatggtgtgacattcagtgttgataccgtacataggctaaaaaaacccgacaaattctaactgaatcaatttaaatttcctgtcgcggtgaaatttggatttgcacattctgtaaatgatatttaaatggtgtacattacatatattacatttttaaatgacattgagtcaatgaatatcgtatctatctgtgacgttttgaacgtcaaaccatcactgtgacacataggtctacattgcata
gi|9 : gcaccatttattaattttagtatctacttaTATTATCAACATCGCAATCTACTAGTAAACT-ATTCTGCAAAAATTTA-----------CA-TTAG--TTTTAAGAAA-GC-TA--TTCACATTTTAG--A-AAA-TGTGTGTGTAAC--ACT---GCCGTT--A--CTGGT------------CTA--------CATA--CAA-TAT--TTACGT--AAATAGCCGAATCT--TTAA-GCAAA------------------A---AT--TCAA-T-ATT-TTAAAAA-AAAGGTT-T-TT-GATA--TAGAAATGGAT--AT-AATGTTCAATT-ACTG-T-AAAC-TGAT-ATG---CAACTTTTG---TAGAATA---A---------A-GTGTTTTTATTCA-TATAAAA--CTG-CG-AGATGCTACT------TTAA-----------------------C--AA-TA--------GACA--CCAACAGC--ATG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATAGTCCAGTCAATTTTTCAACCAACCTCAAGAAAATTGCAACACAA
Alignments
lowQualScore : 1 11 5555555555555 222222222222 111 8888888888888888888888888888888 1 11 111 1 11 11111 1 11 1 888888888888888888888888 1111 11 111 111 1111 22 1111 1 22222222222222 1111 111111 11111 11 1 1111 111 111 22222 1111 22222 1111111111 11 1 1111111 1111 111 111 1 11 11 444444444444 11 1111 2 4444444 11 11111 11 1 11 11 333333333333 11 11 22222 22222222 11 1 111 11 11 111 11 44444444444 22222 1111 1111 111 111111 1 1 2222 11 11 11 111 222 4444444 1 1 1 11 333333333 1 11111 111 11 111 11111 3333333333333333 11111111 5555555555555555555 11 1111111 1111111111111 1111111 2222222222222222
lowQualScore : 3 3 22 2 0 5555555555555 0 444444444444 3 5 5 111 6 0 1 77 999 5 6 0000000000000000000000000000000 1 6 8 8 3 8 5 666 11 0 555 1 6 11 88888 22 3 8 0 33 0 444444444444444444444444 1 3 99 6 1 4444 3 11 8 6 444 999 8 6 8 0 0 8 8 8 222 8 6 5555 8 8 1 55 8 6 8 0 4444 3 0 6 77777777777777 6 77 0 2222 666666 44444 77 5 5 6 6 6 6 1 99 6 3 6 4444 7 7 6 111 111 00000 1 8 8 7777 1 55555 8 0 8 8 6 6 999999 6 6 1 99 1 5 5 1 0 5 3 5 9999999999 99 1 7777777 1 6 77 0 77 2 5 5 1 2222 6 5 000 000 5 0 0 8 3 8 11 11 8 8 111111111111 8 0 8 8 11 8 3333 8 0 0 3333333 8 11 55555 0 0 11 5 0 11 8 66 0 000000000000 00 33 8 3 888 3 33333 55555555 22 2 3 0 0 2 111 33 11 0 0 444 11 8 33333333333 66666 6 6 6 5 5 5 1 5 6666 5 99 2 2 5 5 5 5 6 99 6 6 6 4444 111 6 555555 1 3 0 2 8 0 2 1111 33 33 33 444 6 7 333 1 3333333 3 3 3 88 6 000000000 3 7 6 1 66666 6 5 111 1 5 1 22 4 4 66 1 4 4 222 77 55 33333 55 55 0000000000000000 66666666 66 4 66 66 33 666 4 0 3 7777777777777777777 11 0 4 4 4 8 9999999 0 4 66 0 55 3 6 3 55 0 3 3 666 7777 11 11 8888888888888 3 4 777 4 2222222 1111111111111111 55 66 8 4 4 66 66 5
lowQualScore : . . .. . . ............. . ............ . . . ... . . . .. ... . . ............................... . . . . . . . ... .. . ... . . .. ..... .. . . . .. . ........................ . . .. . . .... . .. . . ... ... . . . . . . . . ... . . .... . . . .. . . . . .... . . . .............. . .. . .... ...... ..... .. . . . . . . . .. . . . .... . . . ... ... ..... . . . .... . ..... . . . . . . ...... . . . .. . . . . . . . . .......... .. . ....... . . .. . .. . . . . .... . . ... ... . . . . . . .. .. . . ............ . . . . .. . .... . . . ....... . .. ..... . . .. . . .. . .. . ............ .. .. . . ... . ..... ........ .. . . . . . ... .. .. . . ... .. . ........... ..... . . . . . . . . .... . .. . . . . . . . .. . . . .... ... . ...... . . . . . . . .... .. .. .. ... . . ... . ....... . . . .. . ......... . . . . ..... . . ... . . . .. . . .. . . . ... .. .. ..... .. .. ................ ........ .. . .. .. .. ... . . . ................... .. . . . . . ....... . . .. . .. . . . .. . . . ... .... .. .. ............. . . ... . ....... ................ .. .. . . . .. .. .
lowQualScore : 3 2 00 5 2 0000000000000 8 000000000000 2 6 2 777 7 7 7 99 777 7 7 9999999999999999999999999999999 0 0 0 0 8 0 6 444 00 8 888 4 0 00 55555 88 0 8 0 22 0 555555555555555555555555 0 7 22 7 0 2222 8 00 0 0 000 888 0 0 0 8 8 0 0 0 444 0 0 8888 0 0 0 44 0 0 0 8 5555 2 8 7 77777777777777 7 77 1 1111 999999 33333 11 7 7 7 7 7 7 0 22 7 3 7 8888 8 5 7 777 777 00000 0 0 0 0000 0 44444 0 6 0 0 7 7 777777 7 7 0 22 7 7 0 4 7 7 6 7 7777777777 33 4 6666666 0 6 99 7 99 7 7 7 3 1111 6 7 000 000 0 8 8 0 8 0 00 22 0 0 000000000000 0 8 0 0 00 0 4444 0 0 8 8888888 0 00 00000 8 8 00 6 0 00 0 22 8 666666666666 88 88 0 2 222 2 88888 00000000 55 5 2 8 0 5 000 88 00 8 6 000 00 0 88888888888 00000 7 7 7 7 7 7 7 7 6666 7 11 2 5 0 0 0 0 7 22 7 7 7 2222 777 7 888888 7 3 8 5 8 2 8 2222 88 88 88 000 7 3 333 0 0000000 3 3 3 33 7 333333333 3 3 5 0 77777 7 7 444 4 7 7 22 4 4 11 0 0 0 111 99 55 22222 55 55 7777777777777777 11111111 11 4 11 11 88 999 4 2 2 4444444444444444444 99 1 4 4 4 9 0000000 8 4 11 7 55 6 6 6 00 5 6 6 444 7777 77 44 6666666666666 6 4 111 4 9999999 9999999999999999 55 11 9 4 4 11 11 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAA----ANA-TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTGAGTA-ATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAA-TT-TTAACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
Reference ( family-5838 ) : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAA----ANA-TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTGAGTA-ATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAA-TT-TTAACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
gi|1 : TTTTTTTTCTTTCTCAACTCTTGGGT-GTT-TGATTGGGGAGGGGGG-------------TGTTTTTT----GTCTAG--TCTTT----TTTTGTT---TG-TTGCATTCGTTTAT--TT--AT-TTTAGT-ATCTACTT-------------T--AGT-AGCT----G--TCAAAGTGCA-GT-GATTAG-GCCTCTAGTA-ATT-GTACAT--GTAAATATAACATTGCTTTAGCATATCAAA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTAAGTTTAT-------------------------TTTTAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-AT-GTAA-GTTGTTT-AGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CG-GTATTTT--AAAACGTA-AG-TACCACTGAGTA-A-A-TTCACCGTCAC-GTCAACGTA-ACGTAAAAT--GTCTT--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCATTTTGTT-TGTTACAATTTTTGTAA-T-TGT-TAGAGTGGATA--TATTTTGAA-CTAAAGA-AA-ATA---CTTTTTCATGACAAGCACATTT-AAGA---AA---AATATCT-----AGTTGTCTTCA-T-TTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TG--GCT-CAATTTCCAGTAAGGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AG----TGTTGA--CTCC-GT----AG-ATAGACCAAAAAA--CCG--ATTAA-TT-CTAACTGAATCAATTT----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------CTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGATTCA-ATG-AATATCGTATAAAT-TTAT--CTG-----ACGTTTTGAACGTC--AAATCGTCACTG---AC--ACAT-AGGT-CTTCATTGC-ATATC-A--TTGTAAC-TTTGAC--TATAA-ACTACATGTCA-TATCAAAAGTCTGTTCATA-AAA-TCGTTC-ACAAGTAATCTAAAAATCCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A------AACC---T-TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTA---AA-ACGTTGTGACACACAATCTCATTAATATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CAAGTA--TGAT-GAAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAGCATTTATCGACATATGAATTCAAATTTTGGATA----AATT--ATT--CAG--AATTC-T-CACACATGTCCGAATGTATCTACAA---TGCGTACTA----G--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATACGC--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TAAG--TTATAAGAAA-GC-TA--TCAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CACG--CAA-TAT--TTACGT--AAATATCCGAACAT--TCAA-GGCAATAC---------------A---AT--TTCG-C-ATT-TTAAACA-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATG-ACC--TCAC-A-TGAT-ATG---CAGCTTTCC---TATATTG---A---------A-GTGTTTTTATTCA-TGTAAAT--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAGCAGC--GTG-CGCGGC
gi|10 : gatccactatgatttgcggacttT-GTTCTTCAAACGTTTGT--GTTTGTATTG-TTAAAATCTTAAGGAA-TT-TG--TTCACATTTTGGT-A-AGG-CTTGTG-----C--AAT---AT--TT--A--C-----------------------------TG--CAA-CATCTTTATGT--AAATAT------A-----AA-G---ATATATG------------A---AC--TAGGAC-ATT-TTAAAAAGA----CG-TATT-GATA--TCGATATGGATCTAG-AACGTAAGGTT-A--G-CCCTAA-TGAA-ATG---TAACGTTCG---TGTACTA---ATTATAATTGATGCGCCTTTATTCA-CATAAA---CAG-CGTACACTCTACC-------TAA----T-C---------ACGC--GC--AA-TA-CGAA-CTGGCA--CTACCGGC--GCG-CGCGGC
gi|11 : CACCACAATCT-----TAA-TTTATGCTTCAAAATTTTGCTCGGTTGTGTCAGTTAGGTTTTTAAGAAAAGC-TAATCAAATATTTTGGTTACAAG-TGTGTGTG-AACCAACCAAAGTCGTT--A--C-GGT------------CTGTAAATCAGCATGACCAAATAT--TTACGT--CAAAATCCGAACATCCTCAAGGCCAATACAATT-----------AATCAT--TTCG-C-ATT-TT--AAG-A----TG-TCTT-TTTAAGTTACAATCGAT--AA-AATGT-AGATT-ACCT-TCACAA-TGAT-ATAGTTTAGCTTTCC---TTCGTTAGATA---------A-GTGTTTTTAgctctta
gi|12 : ttgtcTTGGGTTTTTACAGTTTGGGA----------------------TTTTTAAAAGTCTATATTCTTTATTCTTTAGTT---TA-TCGCAT-CGTTTAT--TC--AT-TTTAGT-ATTTACTTATTCGTATCCGATC--AGT-AGCT----G--TCAATGTGCAAGT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GCAAATATAACGTC-TCCTAGCATATCATATAAA--TGT-A---CTCGTATGCATATTGAATGC-ATT-CAAATACTT-TCTAAGTTTATC-----T------GAATACGAAATTTTTCAAATTCAGTTTTGAATACCATTA--T-GTTGCA----TA
gi|13 : ATAA-ACTACATGTCA-TATCAAAAATCTGTTCA-A-AAAATCGTTC-ACACGTAATCTAAAAT-CCTATTTCT-A-AAACCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAA--ATAACC-CA----A------AACC---T-TT-AC-TATCA-GAC-A-TTTTGAA-AGAGTA-ACTTT---AA-ACGTTATGACACACAATCTCATTAATATAACCGCTAT-GAAT-ATT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-TTCAGTATC---TTTTCTTTAAGT----A-TAGTTATTTTCATTTC-AAAACCA
gi|14 : T-A-AAGATGTGCGTGTTAC--GTT---ATCGTT--A--CCAGTACATGTACACGCCTA--------CATG--CAA-TAT--ATAT-C--AAATATCACAATAT--TCAA-GCTAATACATGTTA---------G---ATAATTCA-CGATT-TTGCAAA-A----TA-CGTT-GATA--TCAAAATGCAT--AG-A----AAAACT-ACCG-TCAAAA-TGAT-ATG---TAACTTTTG---TATAGAA---A---------A-GTA-TTTTGCTCA-TATAAAA--CAG-CGTACATGCTGCC------GTAA----T-G---------ATCT--GGAAAA-AA-ATTGTTTAACA--CCAACAGC--GTG-
gi|15 : ATCAGAATTT-----TG--CT-ATCCTGCCAAATTGTAG--GTTTTTGTTA-T-AG--T-----GA-----------TGACATATTCAT-A-ATA-TGTCTATATTAC--ACT---CTCCTTGTA--TCTGT------------CTA--------CATA--CGA-TAA--TTGTGA--AAATGTAGAAATAG--TCAA-GCCAATATAGGCCTACATACAAAA---AT--TTCA-C-ATTCTTAAAAA-A----T---ATT-GCTA--TCAAAATGGAT--AG-GATGT-AAATT-ACT--TCAAAAGTGAT-ATG---TAACCTTCG---TGTATTA---A---------A-
gi|16 : TCG-C-ATT-TTAAAGA-AGTA-TAATATT-GATA--TTGAAATGGAT--AT-AATGTCAAATT-ACCG-TAAAAA-TGATAATG---CAACTTTCC---T---------------------GTGTTT------------AAA--CAG-CGTAAATGCTACC------ACAATCCTT-T---------GTACGTGT--AATTA-CGTA-TTGACA--CCAATAGC--GTG-actgcgcaaatgttacgt
gi|17 : TTTTTTTTCTT-CTCAACTCTTGGGTTGGT-TGATTGGGGAGGAGGGTTGTGTGTTTGGTTGTTTTTTA---GTCTAGT-TCTTTATTCTTTTATT---TG-TTGCA-CCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAAatga
gi|18 : TTAATTTAA--CAAAAACC---GTTTACTCGGT--ATAACC-AA----AGTTATTAACCAAACATC-AT-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTAACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|19 : CAATCTCATTAATATAACCGCTAT-GAAT-AAT-TCACATA-TCAGG-CACGTA--TGAT-ACAT-TAT-T----TATC---TTTTC-TTAATTAAGAA-TAGTTATTTTCATTTC-AAAACCATTTAT
gi|2 : TTTTTTTGTTGTATG-TCG-ATTTGCTTAT--TATTATCTTTA---ATTTAATT-------------CTCGGT-A--T----GA-TCA----GTA-GC-TATCAG-----CTGGCATATTTGTA-ATTTGTAAATA--ACGAT-TTTTAACATATCATACAAACCTGTCA---CTTGTAT-----TC-AATGTTATTACTAATATTTCTCTGAGGTTATT-----TTCAAAAGAA----ACA-TTTTGAAATTTAATTT--GAT-TCATTG--TTGTGGCA----TA-TTG--TGT-TGAT-G---TATTACCAC-ACATAGTAACGCTGTTTTAGTTTA-AAAAGCTAACATTTTCATATAATA--TA-CGTGTATTTC--GAGAC-TC-AG-TACCAGTGC-TA-ATAATTCACCGCTGCTGTAAAT-TA---GTC-------TCTC--T--TTTT-ACCGTCC-TG----ACAC--AC--TGTTGACCCAACATTTTTTTT-TTCTTTTGCAATTTT-CTAA-T-TGCCTAGAATGCAAC--CATTTTGAC-TTAAAGA-AACATACTTTTTTTTCAAGACT-GCACGGTTGAAGAGAAAA---AAAAATT-----AGTTGTCCTAA-T-TTGTGCT----AATTGAATAT---CC-GTTATCGCGACGATTAG-TTTATAAGACA---TATTATTACAATTGCAA-TTACGTATTACAGTTTCACGG-GCACGTC-GTGGCAATTCCCAAAT----TATTGAACCTCTGGTACAAAA-ATTTGTTCAAAAC--CAA--ACAAA-TT-TTAATTGAAT-AATTCCTCGGAATTTCCTGTCGCG-ATCGCAA---AACCT---TT-------CTCCGTAAATGTATATCTTTAAATG-GTGTAATG------------CTAC-ATGTATTACA-TTTCTTAAA--TGACTACTTGGATTCACATGCAATATCGT---AAT-T-ATGCCTGTG---ACGTCGTGAACGTC--CAATCAGCACTGGTGACCGCCAT-AGGT--TACA-TGC------------GTAACGCTTGAC--TATAA-ACTAAAT-----TGCC---------TCCA-GCAAA-TCATTCAACAA--AA---AAAAA-C--ATTTCT-ATGAATCTCGTTTTAATTTAA--AACAACCCAGTGCTAATTGAATTCATAACCACACACTA-----TAGTC---AATT-AT-AGTCA-GAC-ATTTTTGAACAG-ATAGGCTTGAAAAA-AGACTGTGGCAC-CAATCTCATTAACATAAGCGC-ATCGGAT-AATGCCACACG-CCAAGCCACGTA--TGACAACAGATAT-T----TATCACTCTTTC-TTTAGT----CTTGGTTA--TTCATTTCAAAAACCATTTATCGA-ATATAATTCCAAATGTT-GATATCATAATTAAATT--CAGCAAATACAC-CACATAT
gi|20 : AATCGAT--AG-AATGTAAAATT-ACCG-ACACAA-TGAT-ATG---TAGCTT--C---TATATTG---A---------A-GTGTTTTTAATCC-TCTTAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--acatgt
gi|21 : tacTTTTATTCAGTATAAAGAGCAGGCGTAGATGCTACCGGCGCAGTAA----TCGATACCGGCTGTAC--GT--AATTACCTTA-TTGACA--CAAACAGCAAGTGACGCGAC
gi|22 : --TTTTAAGAAT-GT-TA--TGAACATATTGGT-A-A---TATCTGTGCGAC--AT-----TCATT--AATTCA--------------CTA--------CATG--CAA-CAG--TTACGTAAAAATATCAAAATAC--GTAA-G
gi|23 : -G-GCAGGGT-GAGCC-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CCG--ACGAA-TTGTTCACTAAGTCAACTC----AAATTTCCAGTGTTG-AT---GA---Agt
gi|24 : -GCAGGGT-GAG-C-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CCG--ACGAATTT-TTCACTAATTCAACTC----AAATTTCCAGTGTTG-AT---GA---AA
gi|25 : T-------------C--AAT-AGCT----C--TCAATGTGCACGT-GATTAG-GCCTCTAGTA-ATTTGTACCT--ATAAATATAACATT-GCTTAGCATATCATA-AAA--
gi|26 : a-AATGCCAACTT-ACCG-TCGCAA-TGAT-ATA---CAGCTTTCC---CATATTA---A---------A-GTGTTTT
gi|27 : AA--TTTTAAGAAT-GC-CA--TGGACATTTTGGT-A-A---TATCTGTGTGAC--A-----GTCTTT--A--Cagtc
gi|28 : AC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACA----------------------CTAT-GAAT-AAT-CCACGTA-ttaa
gi|29 : G-TTT-TAAGATAG--TG--ATT-CAGTTTCAAGTTACGTATTACA--TTTAC-G-GCACG
gi|3 : aTTTTTTA---GT-TGG--T-TTTCTT--TTTGTT---TGATTGCATTCGTTTAAAATA--AA-ATAAGTCATTTACTTATTCATATCCGATC--AGT-AGC-----GATTTAATGCGCA-TTTGCTTGGAGCCTCT----------T---T--GTAAATATAACGTT-C-TTAACATATGAAA-ATA--TAT-ATTACTTGTATGTATCTCCAATAC-AG--CTAATACTT-CATGAGTTTATCGAATAC------GAA----ATA-TTTTAAAATTCAAATTTGA-TATCATTA--T--TTG-A----TAATTG--T-T-TAATTG---CATCACA-C-A-ATAGTAA-GTC-TTTTAGTTTTTAAA-GTCAGTATTT-CATCTAACA--TAACGTGTATT-----AAATGTA-AGATACCAGTA--CA-ATA-TTCACC-----------CGTA-ACGTCAAATA-GTTTC--TCATTTTGAC--TC-GTG----ACCA-GAACGTGTTGAC-----ATCTG--TT-TT-TGCTGGAATTTT-GTAA-TGTGT-AGGAGTGCATA--TATTTTGAAGTTAAAGAGAA-AAA---TCTTTTCAAGACATGCACATTT-A-GA---AA---AATCTTT-----AGTTGTCTTGAAT-TTGTGTA----TATAGAAT-T---GC-TTTA-TG-GACGATTGG-TTT-TAAGATAG--TT--ATT-CATTTTCA-GCAACGTATTACA--TT-AC-GCACACG-T-GTGAC-ATTC----CCGGTCTGTTGAG-CTCCCGT----AG-ATTGTCTAAAAAA--C-G--AAAAA-TT-TTAACTGAATCTACTC----AAATTTCCTGTCATGAAT---GA---AATTT-GATTTGCA-CATTCTCTAAATG-ATA--TT--AATGCGTGC-ATA------------TTAC-ATATA-TACATTTT-TTGAA--TTAC-A--T-GACTCA-ATG-AATATCGTA-A----T-AT--CTGAG---ACGTTTTGAACG-CAAAAATTATCACT-GTGAC--ACATAAGGTATTACATTAC-AAATT-ATTT-GTAAC-GTTGAC--TATAA-ACTACATGTTGCTGTTAAAA-----TTC--------TTGTT---CAAGTAATCCAAAAA-CCTATTTCTAA-AAATTC--CTTTAATTTAAACCAC-ACCC---GTTAA
gi|31 : tgtAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGGCA--CCAACAGC--GTG-CGCGACtagtccagtccaatttgtcaaccaaacctcaagaaaatttgcaacacaag
gi|32 : TCTGTG----GCAT-GAC-GTGTTGAC-----ATTCAA-TT-TT-TGTTGCAgtc
gi|4 : TTTCAAATCCA--TTTGTAAATTATTAAAT-GTTGTAGTCTTAGTTAAATGTATAATAGAAATATCATAAACA-ATTTTAA-TTTGTTTTCCATCA-TAA-ACTAATATTG-CATATGATCATTA-AATGTTGATA--AAAATGTACAG-TA--ATCG-TTA-ATA-T--AACGTT-C-GTCA-C-TAGACGTCAA-----------T--TTTC-AC-ATGTGTGTGAGACATAGACGCTGTTGA------ATTTATCTT-TT-TGGTGGGATTTG-ATAAAT-TTT-TTCATTGCCTAAATATCTTGGA-GAACAGATAA-AT----CTTTTTCAAGA-ATGCACA-----AGA---AATGCGACATTCCAAAAAATC--CTTTA-TATTCTGTTCCGCGATGAAATATATGGCATTCA-CG-AATGGTTGAATTT-TTACATAGGCTA--TTA-CAATTTCAA-TGACATAATGAA--GTTAA-G-AGAAGGTAGTGAC-ATTT----AA----TGTTGAT-CTGC-GT----A--ATTGGCT-AAAAA--CCAGAACAAA-TT-TTCATAAAATCAACTT----AAACTT-TTGTT-CG-AA---CACCGAATTTCGA-TTACACCATTT--TAAAT--ATA--AT--AATG-TTTT-ATAACCAAGAGAAACTTACAAAAAATTACT-TAC-TTAAAATTGGC-A--TCAATTTA-GTACAGT-TCCTA-A----T-AA--CGATGAATATGTTTTT-ACGTC--AAATAA-CATTGGTGAC--ACAC-AA----CATATTTCGATATCAA--T-GTAAA-TTGGACGTTATAATACTACATATTA-
gi|5 : aattcaatataatagcAACTCATT--ATAAAC-CA----A-----AACCC---CATTTACCTATCAAGACCA-TTTTGAA-AGTG-A-ACTT----AA-CCGTTGTGACACACAATCTTATTACCATAAC-GATAT-GAATTAAT-CCACATAATCAAG-CACGTGAGTGAT-AAAA-AATAT----TATC---TTTTC-GTAAGT----A-T-TTTATTTTCATTTTTAAAACCACT-ATC-AGAAATTAATTCAAATTTTTAATG----AAAT--ATTGCCAG--AATTC-CTCACACATAACC-AATGTA-CTACAAACGTATGCATTAA--TGCCTATTTCTACACGTTAAGGTTTGATCTACACC-TCCAATTCTGCCACTCTGAATCAGCGT-TACTGCATA--CTGATTAAGATGACATCATAATTTTAATA-TGTACAT-ATCAACATCAAAATCT-----AAA-TT-AATCTGCAAAATTT-GT--GTT-GTATTA-TTAA--TTTTAAGAAA-ATATA--TTAACATTT-GGT-A-AAG-TGTGTGTG--AC--GCT---GTTGTT--A--C--GA------------CTA--------CAGG--CCA-TAT--T-ACGT--AAAAATCCAAACAT--TCAA--CCAA-ACATG------------A---ATA-TTTG-C-AGT-TTAAAAAGA----TT-TATTTGATA--TCAAAATGGAT--AGGAATGTAAAATTTACCGGTCACAA-TGAT-ATA---TAATTTTCGGTGTATATAA---T---------A-GTGTTTTTAT-CA-TGTAAGA--CAG-CGTAG-TGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TCGACACCCCAACAGC--GTG-C-CGGatatttaccattctaaaa
gi|6 : -AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTT---TTTACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-GCAG-AAT-T----TCTC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTA-AAAACCACTTATCGACATATGAATTCAAATTTTCGATA----AATA--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTAATGGCCTA--TATTCC-ACACGTTAAGGTTT-ATCTACACCGCCC--TTCTTGCATTTTGTGTCAACGTCTACAG------C--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAGTCT-----TAA-TT-ATTCTGCAAAATTTTAT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TCAACATTTTGGT-A-AA---GTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TTT--TTACGT--AAATATCCAAATAT--TCAA-GCTAATACAATT-----------AAT-AT--TTAG-C-ATT-TTGAAAG-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TA---------------------------TATTCA-TATAAAA--CGG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-CTAACA--CCAACAGC--
gi|7 : T-CTCAACTCTTGGGTTGTT-TGATTGGGGAGGGGGG-------------TGTTT------------G--TTTTTAGTCTTTTGTT---TG-TTGCATT-GTTTAT--TT--AT-TTT
gi|7 : TCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-ATAGTAA-GTTG-TTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CGAGTATTTTTAAAAACGTA-AG-TACCACTGAGTATAAA-TTCACCGTCAC-GTCAACGTA-ACGTCAAATTAGTCTCTTT--TTTT-AC-GTCTGTG----ACAT-GA-CGTGTTGAC-----ATTCAA-TT-TT-TGTTACAATTTT-GTAT-T-TGT-TACAGTGGATA--TATTTTGAA-TCAGAGA-AA-ATC---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaaattcagttttgaatatcattatgttgcataattgtgttgattgtatcacaagaatagtaagttgtttagtttaaaagccgatatttcatctaatgtgcgagtatttttaaaaacgtaagtaccactgagtataaattcaccgtcacgtcaacgtaacgtcaaattagtctctttttttacgtctgtgacatgacgtgttgacattcaatttttgttacaattttgtatttgttacagtggatatattttgaatcagagaaaatcttttttcaagacaagcacatttaagaaaaata
gi|8 : tctcaactcttgggttgtttgattggggaggggggtgtttgtttttagtcttttgtttgttgcattgtttatttattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAA
gi|8 : gcac-GTCAACTTA-ACGTCAAATTTGTCTCCTT--TTTT-AC-GTCTGTG----ACA--G--CGTGTTGAC-----ATTCAATTT-TT--GTTGCAATTTA-GTAA-T-TGT-TAGAGTGGATA--TATTTTGAA-TTAAAGA-AA-ACA---TTTTTTCAAGACAAGCACAATT-AAGA---AA---AATATTT-----AGTTGTCTTCA-T-GTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGGAAGGTATTACA--TTTAC-G-GCATGGT-GTGAC-ATTC----AG----TGTTGA--TACC-GT----AC-ATAGGCTAAAAAAACCCG--ACAAA-TT-CTAACTGAATCAATTT----AAATTTCCTGTCGCG-GT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGAGTCA-ATG-AATATCGT----ATCT-AT--CTGTG---ACGTTTTGAACGTC--AAACCATCACT-GTGAC--ACAT-AGGT-CTACATTGC-ATAatttgtctccttttttacgtctgtgacagcgtgttgacattcaatttttgttgcaatttagtaattgttagagtggatatattttgaattaaagaaaacattttttcaagacaagcacaattaagaaaaatatttagttgtcttcatgtgtgttaattgaatagctgtacggacgattggttttaagatagtaattcaatttcaaggaaggtattacatttacggcatggtgtgacattcagtgttgataccgtacataggctaaaaaaacccgacaaattctaactgaatcaatttaaatttcctgtcgcggtgaaatttggatttgcacattctgtaaatgatatttaaatggtgtacattacatatattacatttttaaatgacattgagtcaatgaatatcgtatctatctgtgacgttttgaacgtcaaaccatcactgtgacacataggtctacattgcata
gi|9 : gcaccatttattaattttagtatctacttaTATTATCAACATCGCAATCTACTAGTAAACT-ATTCTGCAAAAATTTA-----------CA-TTAG--TTTTAAGAAA-GC-TA--TTCACATTTTAG--A-AAA-TGTGTGTGTAAC--ACT---GCCGTT--A--CTGGT------------CTA--------CATA--CAA-TAT--TTACGT--AAATAGCCGAATCT--TTAA-GCAAA------------------A---AT--TCAA-T-ATT-TTAAAAA-AAAGGTT-T-TT-GATA--TAGAAATGGAT--AT-AATGTTCAATT-ACTG-T-AAAC-TGAT-ATG---CAACTTTTG---TAGAATA---A---------A-GTGTTTTTATTCA-TATAAAA--CTG-CG-AGATGCTACT------TTAA-----------------------C--AA-TA--------GACA--CCAACAGC--ATG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATAGTCCAGTCAATTTTTCAACCAACCTCAAGAAAATTGCAACACAA
Alignments
lowQualScore : 1 11 5555555555555 222222222222 111 8888888888888888888888888888888 1 11 111 1 11 11111 1 11 1 888888888888888888888888 1111 11 111 111 1111 22 1111 1 22222222222222 1111 111111 11111 11 1 1111 111 111 22222 1111 22222 1111111111 11 1 1111111 1111 111 111 1 11 11 444444444444 11 1111 2 4444444 11 11111 11 1 11 11 333333333333 11 11 22222 22222222 11 1 111 11 11 111 11 44444444444 22222 1111 1111 111 111111 1 1 2222 11 11 11 111 222 4444444 1 1 1 11 333333333 1 11111 111 11 111 11111 3333333333333333 11111111 5555555555555555555 11 1111111 1111111111111 1111111 2222222222222222
lowQualScore : 3 3 22 2 0 5555555555555 0 444444444444 3 5 5 111 6 0 1 77 999 5 6 0000000000000000000000000000000 1 6 8 8 3 8 5 666 11 0 555 1 6 11 88888 22 3 8 0 33 0 444444444444444444444444 1 3 99 6 1 4444 3 11 8 6 444 999 8 6 8 0 0 8 8 8 222 8 6 5555 8 8 1 55 8 6 8 0 4444 3 0 6 77777777777777 6 77 0 2222 666666 44444 77 5 5 6 6 6 6 1 99 6 3 6 4444 7 7 6 111 111 00000 1 8 8 7777 1 55555 8 0 8 8 6 6 999999 6 6 1 99 1 5 5 1 0 5 3 5 9999999999 99 1 7777777 1 6 77 0 77 2 5 5 1 2222 6 5 000 000 5 0 0 8 3 8 11 11 8 8 111111111111 8 0 8 8 11 8 3333 8 0 0 3333333 8 11 55555 0 0 11 5 0 11 8 66 0 000000000000 00 33 8 3 888 3 33333 55555555 22 2 3 0 0 2 111 33 11 0 0 444 11 8 33333333333 66666 6 6 6 5 5 5 1 5 6666 5 99 2 2 5 5 5 5 6 99 6 6 6 4444 111 6 555555 1 3 0 2 8 0 2 1111 33 33 33 444 6 7 333 1 3333333 3 3 3 88 6 000000000 3 7 6 1 66666 6 5 111 1 5 1 22 4 4 66 1 4 4 222 77 55 33333 55 55 0000000000000000 66666666 66 4 66 66 33 666 4 0 3 7777777777777777777 11 0 4 4 4 8 9999999 0 4 66 0 55 3 6 3 55 0 3 3 666 7777 11 11 8888888888888 3 4 777 4 2222222 1111111111111111 55 66 8 4 4 66 66 5
lowQualScore : . . .. . . ............. . ............ . . . ... . . . .. ... . . ............................... . . . . . . . ... .. . ... . . .. ..... .. . . . .. . ........................ . . .. . . .... . .. . . ... ... . . . . . . . . ... . . .... . . . .. . . . . .... . . . .............. . .. . .... ...... ..... .. . . . . . . . .. . . . .... . . . ... ... ..... . . . .... . ..... . . . . . . ...... . . . .. . . . . . . . . .......... .. . ....... . . .. . .. . . . . .... . . ... ... . . . . . . .. .. . . ............ . . . . .. . .... . . . ....... . .. ..... . . .. . . .. . .. . ............ .. .. . . ... . ..... ........ .. . . . . . ... .. .. . . ... .. . ........... ..... . . . . . . . . .... . .. . . . . . . . .. . . . .... ... . ...... . . . . . . . .... .. .. .. ... . . ... . ....... . . . .. . ......... . . . . ..... . . ... . . . .. . . .. . . . ... .. .. ..... .. .. ................ ........ .. . .. .. .. ... . . . ................... .. . . . . . ....... . . .. . .. . . . .. . . . ... .... .. .. ............. . . ... . ....... ................ .. .. . . . .. .. .
lowQualScore : 3 2 00 5 2 0000000000000 8 000000000000 2 6 2 777 7 7 7 99 777 7 7 9999999999999999999999999999999 0 0 0 0 8 0 6 444 00 8 888 4 0 00 55555 88 0 8 0 22 0 555555555555555555555555 0 7 22 7 0 2222 8 00 0 0 000 888 0 0 0 8 8 0 0 0 444 0 0 8888 0 0 0 44 0 0 0 8 5555 2 8 7 77777777777777 7 77 1 1111 999999 33333 11 7 7 7 7 7 7 0 22 7 3 7 8888 8 5 7 777 777 00000 0 0 0 0000 0 44444 0 6 0 0 7 7 777777 7 7 0 22 7 7 0 4 7 7 6 7 7777777777 33 4 6666666 0 6 99 7 99 7 7 7 3 1111 6 7 000 000 0 8 8 0 8 0 00 22 0 0 000000000000 0 8 0 0 00 0 4444 0 0 8 8888888 0 00 00000 8 8 00 6 0 00 0 22 8 666666666666 88 88 0 2 222 2 88888 00000000 55 5 2 8 0 5 000 88 00 8 6 000 00 0 88888888888 00000 7 7 7 7 7 7 7 7 6666 7 11 2 5 0 0 0 0 7 22 7 7 7 2222 777 7 888888 7 3 8 5 8 2 8 2222 88 88 88 000 7 3 333 0 0000000 3 3 3 33 7 333333333 3 3 5 0 77777 7 7 444 4 7 7 22 4 4 11 0 0 0 111 99 55 22222 55 55 7777777777777777 11111111 11 4 11 11 88 999 4 2 2 4444444444444444444 99 1 4 4 4 9 0000000 8 4 11 7 55 6 6 6 00 5 6 6 444 7777 77 44 6666666666666 6 4 111 4 9999999 9999999999999999 55 11 9 4 4 11 11 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAA----ANA-TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTGAGTA-ATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAA-TT-TTAACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
Reference ( family-5838 ) : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAA----ANA-TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTGAGTA-ATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAA-TT-TTAACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
gi|1 : TTTTTTTTCTTTCTCAACTCTTGGGT-GTT-TGATTGGGGAGGGGGG-------------TGTTTTTT----GTCTAG--TCTTT----TTTTGTT---TG-TTGCATTCGTTTAT--TT--AT-TTTAGT-ATCTACTT-------------T--AGT-AGCT----G--TCAAAGTGCA-GT-GATTAG-GCCTCTAGTA-ATT-GTACAT--GTAAATATAACATTGCTTTAGCATATCAAA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTAAGTTTAT-------------------------TTTTAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-AT-GTAA-GTTGTTT-AGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CG-GTATTTT--AAAACGTA-AG-TACCACTGAGTA-A-A-TTCACCGTCAC-GTCAACGTA-ACGTAAAAT--GTCTT--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCATTTTGTT-TGTTACAATTTTTGTAA-T-TGT-TAGAGTGGATA--TATTTTGAA-CTAAAGA-AA-ATA---CTTTTTCATGACAAGCACATTT-AAGA---AA---AATATCT-----AGTTGTCTTCA-T-TTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TG--GCT-CAATTTCCAGTAAGGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AG----TGTTGA--CTCC-GT----AG-ATAGACCAAAAAA--CCG--ATTAA-TT-CTAACTGAATCAATTT----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------CTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGATTCA-ATG-AATATCGTATAAAT-TTAT--CTG-----ACGTTTTGAACGTC--AAATCGTCACTG---AC--ACAT-AGGT-CTTCATTGC-ATATC-A--TTGTAAC-TTTGAC--TATAA-ACTACATGTCA-TATCAAAAGTCTGTTCATA-AAA-TCGTTC-ACAAGTAATCTAAAAATCCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A------AACC---T-TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTA---AA-ACGTTGTGACACACAATCTCATTAATATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CAAGTA--TGAT-GAAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAGCATTTATCGACATATGAATTCAAATTTTGGATA----AATT--ATT--CAG--AATTC-T-CACACATGTCCGAATGTATCTACAA---TGCGTACTA----G--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATACGC--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TAAG--TTATAAGAAA-GC-TA--TCAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CACG--CAA-TAT--TTACGT--AAATATCCGAACAT--TCAA-GGCAATAC---------------A---AT--TTCG-C-ATT-TTAAACA-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATG-ACC--TCAC-A-TGAT-ATG---CAGCTTTCC---TATATTG---A---------A-GTGTTTTTATTCA-TGTAAAT--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAGCAGC--GTG-CGCGGC
gi|10 : gatccactatgatttgcggacttT-GTTCTTCAAACGTTTGT--GTTTGTATTG-TTAAAATCTTAAGGAA-TT-TG--TTCACATTTTGGT-A-AGG-CTTGTG-----C--AAT---AT--TT--A--C-----------------------------TG--CAA-CATCTTTATGT--AAATAT------A-----AA-G---ATATATG------------A---AC--TAGGAC-ATT-TTAAAAAGA----CG-TATT-GATA--TCGATATGGATCTAG-AACGTAAGGTT-A--G-CCCTAA-TGAA-ATG---TAACGTTCG---TGTACTA---ATTATAATTGATGCGCCTTTATTCA-CATAAA---CAG-CGTACACTCTACC-------TAA----T-C---------ACGC--GC--AA-TA-CGAA-CTGGCA--CTACCGGC--GCG-CGCGGC
gi|11 : CACCACAATCT-----TAA-TTTATGCTTCAAAATTTTGCTCGGTTGTGTCAGTTAGGTTTTTAAGAAAAGC-TAATCAAATATTTTGGTTACAAG-TGTGTGTG-AACCAACCAAAGTCGTT--A--C-GGT------------CTGTAAATCAGCATGACCAAATAT--TTACGT--CAAAATCCGAACATCCTCAAGGCCAATACAATT-----------AATCAT--TTCG-C-ATT-TT--AAG-A----TG-TCTT-TTTAAGTTACAATCGAT--AA-AATGT-AGATT-ACCT-TCACAA-TGAT-ATAGTTTAGCTTTCC---TTCGTTAGATA---------A-GTGTTTTTAgctctta
gi|12 : ttgtcTTGGGTTTTTACAGTTTGGGA----------------------TTTTTAAAAGTCTATATTCTTTATTCTTTAGTT---TA-TCGCAT-CGTTTAT--TC--AT-TTTAGT-ATTTACTTATTCGTATCCGATC--AGT-AGCT----G--TCAATGTGCAAGT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GCAAATATAACGTC-TCCTAGCATATCATATAAA--TGT-A---CTCGTATGCATATTGAATGC-ATT-CAAATACTT-TCTAAGTTTATC-----T------GAATACGAAATTTTTCAAATTCAGTTTTGAATACCATTA--T-GTTGCA----TA
gi|13 : ATAA-ACTACATGTCA-TATCAAAAATCTGTTCA-A-AAAATCGTTC-ACACGTAATCTAAAAT-CCTATTTCT-A-AAACCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAA--ATAACC-CA----A------AACC---T-TT-AC-TATCA-GAC-A-TTTTGAA-AGAGTA-ACTTT---AA-ACGTTATGACACACAATCTCATTAATATAACCGCTAT-GAAT-ATT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-TTCAGTATC---TTTTCTTTAAGT----A-TAGTTATTTTCATTTC-AAAACCA
gi|14 : T-A-AAGATGTGCGTGTTAC--GTT---ATCGTT--A--CCAGTACATGTACACGCCTA--------CATG--CAA-TAT--ATAT-C--AAATATCACAATAT--TCAA-GCTAATACATGTTA---------G---ATAATTCA-CGATT-TTGCAAA-A----TA-CGTT-GATA--TCAAAATGCAT--AG-A----AAAACT-ACCG-TCAAAA-TGAT-ATG---TAACTTTTG---TATAGAA---A---------A-GTA-TTTTGCTCA-TATAAAA--CAG-CGTACATGCTGCC------GTAA----T-G---------ATCT--GGAAAA-AA-ATTGTTTAACA--CCAACAGC--GTG-
gi|15 : ATCAGAATTT-----TG--CT-ATCCTGCCAAATTGTAG--GTTTTTGTTA-T-AG--T-----GA-----------TGACATATTCAT-A-ATA-TGTCTATATTAC--ACT---CTCCTTGTA--TCTGT------------CTA--------CATA--CGA-TAA--TTGTGA--AAATGTAGAAATAG--TCAA-GCCAATATAGGCCTACATACAAAA---AT--TTCA-C-ATTCTTAAAAA-A----T---ATT-GCTA--TCAAAATGGAT--AG-GATGT-AAATT-ACT--TCAAAAGTGAT-ATG---TAACCTTCG---TGTATTA---A---------A-
gi|16 : TCG-C-ATT-TTAAAGA-AGTA-TAATATT-GATA--TTGAAATGGAT--AT-AATGTCAAATT-ACCG-TAAAAA-TGATAATG---CAACTTTCC---T---------------------GTGTTT------------AAA--CAG-CGTAAATGCTACC------ACAATCCTT-T---------GTACGTGT--AATTA-CGTA-TTGACA--CCAATAGC--GTG-actgcgcaaatgttacgt
gi|17 : TTTTTTTTCTT-CTCAACTCTTGGGTTGGT-TGATTGGGGAGGAGGGTTGTGTGTTTGGTTGTTTTTTA---GTCTAGT-TCTTTATTCTTTTATT---TG-TTGCA-CCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAAatga
gi|18 : TTAATTTAA--CAAAAACC---GTTTACTCGGT--ATAACC-AA----AGTTATTAACCAAACATC-AT-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTAACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|19 : CAATCTCATTAATATAACCGCTAT-GAAT-AAT-TCACATA-TCAGG-CACGTA--TGAT-ACAT-TAT-T----TATC---TTTTC-TTAATTAAGAA-TAGTTATTTTCATTTC-AAAACCATTTAT
gi|2 : TTTTTTTGTTGTATG-TCG-ATTTGCTTAT--TATTATCTTTA---ATTTAATT-------------CTCGGT-A--T----GA-TCA----GTA-GC-TATCAG-----CTGGCATATTTGTA-ATTTGTAAATA--ACGAT-TTTTAACATATCATACAAACCTGTCA---CTTGTAT-----TC-AATGTTATTACTAATATTTCTCTGAGGTTATT-----TTCAAAAGAA----ACA-TTTTGAAATTTAATTT--GAT-TCATTG--TTGTGGCA----TA-TTG--TGT-TGAT-G---TATTACCAC-ACATAGTAACGCTGTTTTAGTTTA-AAAAGCTAACATTTTCATATAATA--TA-CGTGTATTTC--GAGAC-TC-AG-TACCAGTGC-TA-ATAATTCACCGCTGCTGTAAAT-TA---GTC-------TCTC--T--TTTT-ACCGTCC-TG----ACAC--AC--TGTTGACCCAACATTTTTTTT-TTCTTTTGCAATTTT-CTAA-T-TGCCTAGAATGCAAC--CATTTTGAC-TTAAAGA-AACATACTTTTTTTTCAAGACT-GCACGGTTGAAGAGAAAA---AAAAATT-----AGTTGTCCTAA-T-TTGTGCT----AATTGAATAT---CC-GTTATCGCGACGATTAG-TTTATAAGACA---TATTATTACAATTGCAA-TTACGTATTACAGTTTCACGG-GCACGTC-GTGGCAATTCCCAAAT----TATTGAACCTCTGGTACAAAA-ATTTGTTCAAAAC--CAA--ACAAA-TT-TTAATTGAAT-AATTCCTCGGAATTTCCTGTCGCG-ATCGCAA---AACCT---TT-------CTCCGTAAATGTATATCTTTAAATG-GTGTAATG------------CTAC-ATGTATTACA-TTTCTTAAA--TGACTACTTGGATTCACATGCAATATCGT---AAT-T-ATGCCTGTG---ACGTCGTGAACGTC--CAATCAGCACTGGTGACCGCCAT-AGGT--TACA-TGC------------GTAACGCTTGAC--TATAA-ACTAAAT-----TGCC---------TCCA-GCAAA-TCATTCAACAA--AA---AAAAA-C--ATTTCT-ATGAATCTCGTTTTAATTTAA--AACAACCCAGTGCTAATTGAATTCATAACCACACACTA-----TAGTC---AATT-AT-AGTCA-GAC-ATTTTTGAACAG-ATAGGCTTGAAAAA-AGACTGTGGCAC-CAATCTCATTAACATAAGCGC-ATCGGAT-AATGCCACACG-CCAAGCCACGTA--TGACAACAGATAT-T----TATCACTCTTTC-TTTAGT----CTTGGTTA--TTCATTTCAAAAACCATTTATCGA-ATATAATTCCAAATGTT-GATATCATAATTAAATT--CAGCAAATACAC-CACATAT
gi|20 : AATCGAT--AG-AATGTAAAATT-ACCG-ACACAA-TGAT-ATG---TAGCTT--C---TATATTG---A---------A-GTGTTTTTAATCC-TCTTAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--acatgt
gi|21 : tacTTTTATTCAGTATAAAGAGCAGGCGTAGATGCTACCGGCGCAGTAA----TCGATACCGGCTGTAC--GT--AATTACCTTA-TTGACA--CAAACAGCAAGTGACGCGAC
gi|22 : --TTTTAAGAAT-GT-TA--TGAACATATTGGT-A-A---TATCTGTGCGAC--AT-----TCATT--AATTCA--------------CTA--------CATG--CAA-CAG--TTACGTAAAAATATCAAAATAC--GTAA-G
gi|23 : -G-GCAGGGT-GAGCC-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CCG--ACGAA-TTGTTCACTAAGTCAACTC----AAATTTCCAGTGTTG-AT---GA---Agt
gi|24 : -GCAGGGT-GAG-C-ATTC----AT----TGTTTA--CTCA-GT----AGGATTATCTCAGAAA--CCG--ACGAATTT-TTCACTAATTCAACTC----AAATTTCCAGTGTTG-AT---GA---AA
gi|25 : T-------------C--AAT-AGCT----C--TCAATGTGCACGT-GATTAG-GCCTCTAGTA-ATTTGTACCT--ATAAATATAACATT-GCTTAGCATATCATA-AAA--
gi|26 : a-AATGCCAACTT-ACCG-TCGCAA-TGAT-ATA---CAGCTTTCC---CATATTA---A---------A-GTGTTTT
gi|27 : AA--TTTTAAGAAT-GC-CA--TGGACATTTTGGT-A-A---TATCTGTGTGAC--A-----GTCTTT--A--Cagtc
gi|28 : AC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACA----------------------CTAT-GAAT-AAT-CCACGTA-ttaa
gi|29 : G-TTT-TAAGATAG--TG--ATT-CAGTTTCAAGTTACGTATTACA--TTTAC-G-GCACG
gi|3 : aTTTTTTA---GT-TGG--T-TTTCTT--TTTGTT---TGATTGCATTCGTTTAAAATA--AA-ATAAGTCATTTACTTATTCATATCCGATC--AGT-AGC-----GATTTAATGCGCA-TTTGCTTGGAGCCTCT----------T---T--GTAAATATAACGTT-C-TTAACATATGAAA-ATA--TAT-ATTACTTGTATGTATCTCCAATAC-AG--CTAATACTT-CATGAGTTTATCGAATAC------GAA----ATA-TTTTAAAATTCAAATTTGA-TATCATTA--T--TTG-A----TAATTG--T-T-TAATTG---CATCACA-C-A-ATAGTAA-GTC-TTTTAGTTTTTAAA-GTCAGTATTT-CATCTAACA--TAACGTGTATT-----AAATGTA-AGATACCAGTA--CA-ATA-TTCACC-----------CGTA-ACGTCAAATA-GTTTC--TCATTTTGAC--TC-GTG----ACCA-GAACGTGTTGAC-----ATCTG--TT-TT-TGCTGGAATTTT-GTAA-TGTGT-AGGAGTGCATA--TATTTTGAAGTTAAAGAGAA-AAA---TCTTTTCAAGACATGCACATTT-A-GA---AA---AATCTTT-----AGTTGTCTTGAAT-TTGTGTA----TATAGAAT-T---GC-TTTA-TG-GACGATTGG-TTT-TAAGATAG--TT--ATT-CATTTTCA-GCAACGTATTACA--TT-AC-GCACACG-T-GTGAC-ATTC----CCGGTCTGTTGAG-CTCCCGT----AG-ATTGTCTAAAAAA--C-G--AAAAA-TT-TTAACTGAATCTACTC----AAATTTCCTGTCATGAAT---GA---AATTT-GATTTGCA-CATTCTCTAAATG-ATA--TT--AATGCGTGC-ATA------------TTAC-ATATA-TACATTTT-TTGAA--TTAC-A--T-GACTCA-ATG-AATATCGTA-A----T-AT--CTGAG---ACGTTTTGAACG-CAAAAATTATCACT-GTGAC--ACATAAGGTATTACATTAC-AAATT-ATTT-GTAAC-GTTGAC--TATAA-ACTACATGTTGCTGTTAAAA-----TTC--------TTGTT---CAAGTAATCCAAAAA-CCTATTTCTAA-AAATTC--CTTTAATTTAAACCAC-ACCC---GTTAA
gi|31 : tgtAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGGCA--CCAACAGC--GTG-CGCGACtagtccagtccaatttgtcaaccaaacctcaagaaaatttgcaacacaag
gi|32 : TCTGTG----GCAT-GAC-GTGTTGAC-----ATTCAA-TT-TT-TGTTGCAgtc
gi|4 : TTTCAAATCCA--TTTGTAAATTATTAAAT-GTTGTAGTCTTAGTTAAATGTATAATAGAAATATCATAAACA-ATTTTAA-TTTGTTTTCCATCA-TAA-ACTAATATTG-CATATGATCATTA-AATGTTGATA--AAAATGTACAG-TA--ATCG-TTA-ATA-T--AACGTT-C-GTCA-C-TAGACGTCAA-----------T--TTTC-AC-ATGTGTGTGAGACATAGACGCTGTTGA------ATTTATCTT-TT-TGGTGGGATTTG-ATAAAT-TTT-TTCATTGCCTAAATATCTTGGA-GAACAGATAA-AT----CTTTTTCAAGA-ATGCACA-----AGA---AATGCGACATTCCAAAAAATC--CTTTA-TATTCTGTTCCGCGATGAAATATATGGCATTCA-CG-AATGGTTGAATTT-TTACATAGGCTA--TTA-CAATTTCAA-TGACATAATGAA--GTTAA-G-AGAAGGTAGTGAC-ATTT----AA----TGTTGAT-CTGC-GT----A--ATTGGCT-AAAAA--CCAGAACAAA-TT-TTCATAAAATCAACTT----AAACTT-TTGTT-CG-AA---CACCGAATTTCGA-TTACACCATTT--TAAAT--ATA--AT--AATG-TTTT-ATAACCAAGAGAAACTTACAAAAAATTACT-TAC-TTAAAATTGGC-A--TCAATTTA-GTACAGT-TCCTA-A----T-AA--CGATGAATATGTTTTT-ACGTC--AAATAA-CATTGGTGAC--ACAC-AA----CATATTTCGATATCAA--T-GTAAA-TTGGACGTTATAATACTACATATTA-
gi|5 : aattcaatataatagcAACTCATT--ATAAAC-CA----A-----AACCC---CATTTACCTATCAAGACCA-TTTTGAA-AGTG-A-ACTT----AA-CCGTTGTGACACACAATCTTATTACCATAAC-GATAT-GAATTAAT-CCACATAATCAAG-CACGTGAGTGAT-AAAA-AATAT----TATC---TTTTC-GTAAGT----A-T-TTTATTTTCATTTTTAAAACCACT-ATC-AGAAATTAATTCAAATTTTTAATG----AAAT--ATTGCCAG--AATTC-CTCACACATAACC-AATGTA-CTACAAACGTATGCATTAA--TGCCTATTTCTACACGTTAAGGTTTGATCTACACC-TCCAATTCTGCCACTCTGAATCAGCGT-TACTGCATA--CTGATTAAGATGACATCATAATTTTAATA-TGTACAT-ATCAACATCAAAATCT-----AAA-TT-AATCTGCAAAATTT-GT--GTT-GTATTA-TTAA--TTTTAAGAAA-ATATA--TTAACATTT-GGT-A-AAG-TGTGTGTG--AC--GCT---GTTGTT--A--C--GA------------CTA--------CAGG--CCA-TAT--T-ACGT--AAAAATCCAAACAT--TCAA--CCAA-ACATG------------A---ATA-TTTG-C-AGT-TTAAAAAGA----TT-TATTTGATA--TCAAAATGGAT--AGGAATGTAAAATTTACCGGTCACAA-TGAT-ATA---TAATTTTCGGTGTATATAA---T---------A-GTGTTTTTAT-CA-TGTAAGA--CAG-CGTAG-TGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TCGACACCCCAACAGC--GTG-C-CGGatatttaccattctaaaa
gi|6 : -AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTT---TTTACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-GCAG-AAT-T----TCTC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTA-AAAACCACTTATCGACATATGAATTCAAATTTTCGATA----AATA--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTAATGGCCTA--TATTCC-ACACGTTAAGGTTT-ATCTACACCGCCC--TTCTTGCATTTTGTGTCAACGTCTACAG------C--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAGTCT-----TAA-TT-ATTCTGCAAAATTTTAT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TCAACATTTTGGT-A-AA---GTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TTT--TTACGT--AAATATCCAAATAT--TCAA-GCTAATACAATT-----------AAT-AT--TTAG-C-ATT-TTGAAAG-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TA---------------------------TATTCA-TATAAAA--CGG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-CTAACA--CCAACAGC--
gi|7 : T-CTCAACTCTTGGGTTGTT-TGATTGGGGAGGGGGG-------------TGTTT------------G--TTTTTAGTCTTTTGTT---TG-TTGCATT-GTTTAT--TT--AT-TTT
gi|7 : TCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-ATAGTAA-GTTG-TTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TG-CGAGTATTTTTAAAAACGTA-AG-TACCACTGAGTATAAA-TTCACCGTCAC-GTCAACGTA-ACGTCAAATTAGTCTCTTT--TTTT-AC-GTCTGTG----ACAT-GA-CGTGTTGAC-----ATTCAA-TT-TT-TGTTACAATTTT-GTAT-T-TGT-TACAGTGGATA--TATTTTGAA-TCAGAGA-AA-ATC---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaaattcagttttgaatatcattatgttgcataattgtgttgattgtatcacaagaatagtaagttgtttagtttaaaagccgatatttcatctaatgtgcgagtatttttaaaaacgtaagtaccactgagtataaattcaccgtcacgtcaacgtaacgtcaaattagtctctttttttacgtctgtgacatgacgtgttgacattcaatttttgttacaattttgtatttgttacagtggatatattttgaatcagagaaaatcttttttcaagacaagcacatttaagaaaaata
gi|8 : tctcaactcttgggttgtttgattggggaggggggtgtttgtttttagtcttttgtttgttgcattgtttatttattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTAT--TA--AT-TTTAGT-ATCTACTT----------------AGTCAACTTAACG--TCAA
gi|8 : gcac-GTCAACTTA-ACGTCAAATTTGTCTCCTT--TTTT-AC-GTCTGTG----ACA--G--CGTGTTGAC-----ATTCAATTT-TT--GTTGCAATTTA-GTAA-T-TGT-TAGAGTGGATA--TATTTTGAA-TTAAAGA-AA-ACA---TTTTTTCAAGACAAGCACAATT-AAGA---AA---AATATTT-----AGTTGTCTTCA-T-GTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGGAAGGTATTACA--TTTAC-G-GCATGGT-GTGAC-ATTC----AG----TGTTGA--TACC-GT----AC-ATAGGCTAAAAAAACCCG--ACAAA-TT-CTAACTGAATCAATTT----AAATTTCCTGTCGCG-GT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ACA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGAGTCA-ATG-AATATCGT----ATCT-AT--CTGTG---ACGTTTTGAACGTC--AAACCATCACT-GTGAC--ACAT-AGGT-CTACATTGC-ATAatttgtctccttttttacgtctgtgacagcgtgttgacattcaatttttgttgcaatttagtaattgttagagtggatatattttgaattaaagaaaacattttttcaagacaagcacaattaagaaaaatatttagttgtcttcatgtgtgttaattgaatagctgtacggacgattggttttaagatagtaattcaatttcaaggaaggtattacatttacggcatggtgtgacattcagtgttgataccgtacataggctaaaaaaacccgacaaattctaactgaatcaatttaaatttcctgtcgcggtgaaatttggatttgcacattctgtaaatgatatttaaatggtgtacattacatatattacatttttaaatgacattgagtcaatgaatatcgtatctatctgtgacgttttgaacgtcaaaccatcactgtgacacataggtctacattgcata
gi|9 : gcaccatttattaattttagtatctacttaTATTATCAACATCGCAATCTACTAGTAAACT-ATTCTGCAAAAATTTA-----------CA-TTAG--TTTTAAGAAA-GC-TA--TTCACATTTTAG--A-AAA-TGTGTGTGTAAC--ACT---GCCGTT--A--CTGGT------------CTA--------CATA--CAA-TAT--TTACGT--AAATAGCCGAATCT--TTAA-GCAAA------------------A---AT--TCAA-T-ATT-TTAAAAA-AAAGGTT-T-TT-GATA--TAGAAATGGAT--AT-AATGTTCAATT-ACTG-T-AAAC-TGAT-ATG---CAACTTTTG---TAGAATA---A---------A-GTGTTTTTATTCA-TATAAAA--CTG-CG-AGATGCTACT------TTAA-----------------------C--AA-TA--------GACA--CCAACAGC--ATG-
blockSeqs : . T AC G TTGTGTGTTTGGT AAAAGTCTATAT C A C GTA A C AA ATT C C ATTCATATCCGATCAGTAGCGAT T A T A A T T ACA TT TC T T CC ATTA GC A G T TA C TTTCAAAAGAAACA C G AA T C GTCT A AA A T AAA AAC C A C T A T CAT A T TTTA C A G AG T T A TGCT A G G ATTAGTCTCTTT G CG TGAG TAGACG CCAAC TT . C . A G C C AA G G C ACTT T G G GAA TGC CAAAA A A A CCGC T ATATG A T C A A TATT A G T GT C G C C A G A CCAAAT AC G ACAAAA G C AC GA A T G A CTCG G A CGC CCG C C C T TC TA C A ACCAAGAGAAAC A T C AT T CTTG C C AAT . GC TGAAT AA G G CG A AT AAATTATTT GC GT T G TGC A ATCTG AAAAAA CA G T . C AT CG AC AGT TC A AGTTATT AAACA T C A C T C A G GAAA T CA T C C T G A C AG A A A TCAG ACT T AAGAA A A G G T TCAT AA GC CA AC G T ACG T ATGCC T G G AA C CATACTG A A C A ACTAG A T CTC T G T AA A A AT T T C AGA TT CA CCAAA GT AT CAGTACATGTACACGC TAAATCAG AC A CT AA CG TCC G T AGGCCTACATACAAAA AA A G C G GTATAA T AG CT G A T GG G A GTT GGTG GT CT ATTATAATTG T G GAG G GGCGCAG TCGATACCGGCT GT AA T C T CC AA A
blockSeqs : . T T G . AGTCTAGT C A C . . T . C . . ATTCGTATCCGATCAGTAGCTG T C . . G . T ACC . TT T C . CA GT C C . T . CTGAATACGAAAT G A . . C . G . . A . AC . A . . . . A . T TC . . G C . T . CAC A G . ATTTGTCTCCTT . A . AGAAC . TC . . . . . . C . . T . A T T . . . . G . . . A AT . . . . . GCTA . G T . T . . G . C . CCGGTC G C AGG T C . . G . . C . T . . . G . T . . TA . . . . . . . . TC . C ATC . . TG . T G . . C GATATCAAT G . . G CA A . AGCAAA C G T . C AA . . . . . CACTAT AA . . . . . . T . T . CA T C . . . . . . . . . . . . CT A T G C C . . . . CT . . . A GCCTA . . . . . C . . T T . . . T T . T GT . . . A . . GG TT . AT . . CTGT . . . . . AC T . T AATTAATC A . . . G AAGGTT . . . . A . G . . . G TC TT GATA . . A . G TCCTTT . . T . . . . .
blockSeqs : T T . . AGTTGG T C T . . T . A . . AGTCAACTTAACG T . . . A . T AA . GC T . . A . . . . . . CGAATACGAAATA A A . . T . A . . T . AG . T . . . . A . T TA . . T T . T . TC A T . ATAGTTTCTCA . G . TGAC . AT . . . . . . C . . . . C A T . . . . T . . . G T . . . . . TG . G A . T . . G . A . AT T . AGG T C . . G . . C . T . . . . . T . . . . . . . . . . . TT . . AA . . AG . T . . . . . T . . A TA . . . . . . . . A . . . . . AA CA . . . . . . T . G . CA C C . . . . . . . . . . . . A G . . . . . . . . C . A . . . G T . T . . . . T . . AG CG . TT . . CGGT . . . . . GA G . T ATGTTAG . . . . . CG . . . . C . T . . . C AT GA A . . A . A TC . . . . . . . .
blockSeqs : G . A C . . T . A . . AGTCAACTTAACG . . . . . . . . . C A . . C G . . C . . . . . . C . A . . . . G . A . . . C . . A . . . . . TCTCT . G . TGAC . A . . . . . . G . . . . A A A . . . . C . . . T A . . . . . TT . . G . T . . C . A . AT . . AG T A . . A . . A . A . . . . . . . . . . . . . . . . . T . . AA . . TG . . . . . . . . . . . . . A T . . . . . . T . G . C C C . . . . . . . . . . . . A A . . . . T T . T . . . . G . . TA TG . CT . . TGGT . . . . . AA C . T AATTAAT . . . . . TG . . . . A . G . . . G GT TT A . . A . G TG . . . . . . . .
blockSeqs : . . . . . T . . CTCGGTATGA C . . . . . . . . T . . . CAC . A . . . . . . G . . . . . . . . . . . . TA . . A . . . . C . A . AA . . AC G A . . A . . C . G . . . . . . . . . T . T . . C . . . . . . . . . . . . . A . . . . . T . . T . . . . G . . AG TG . CT . . GGT . . . . . CA T . T ATGA . . . . . TA . . . . C . G . . . G AT TT A . . A . G TG . . . . . . . .
blockSeqs : . A . CAATAGCTC . GC . . . . . . A . . . AG . . A G . . . A . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . AA TA . CC . . CA . . . . . CA T . . ATGA . . . . . TT . . . . A . G . . . C AT TT A . . A . G TG . . . . . . . .
blockSeqs : . T . . . . . . . . . . C . . A A . CT . . GA . . . . . CG T . . A . . . . . TG . . . . A . G . . . C AT TA T . . A . T TG . . . . . . . .
blockSeqs : . . . . T . . . . . T . . . . . . . . . . . . . . . T . . . . T . G . . . C AG AT A . . . . . TG . . . . . . .
blockSeqs : . . . . . . . . . . . . G . . . C A . . . . .
blockSeqs : . . . . . . . G . . . .
blockSeqCons : AGTTGG****** ANTCGATCAGTAGCTG*************** TC* ** CGC* ATGTCTCTCT**** CGAC** AG***** ** AA***** TG*** ** ACTAT****** NA*** ATGA*************** G*
originalCons : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTCTAG--TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTT-------------C--AGT-AGCT----G--TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTT-CCTTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAA----ANA-TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTGAGTA-ATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAAT--GTCTC--T--TTTT-AC-GTCTGTG----ACAT-GACCGTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAA-TT-TTAACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TTTAAATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA-AAAT-T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT-CTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA----A-----TAACC---CATT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACANGT-----------A---AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTAGTTGG------TCTTTATTCTTTTGTT---TG-TCGCATTCGTTTAT--TA--AT-TTTAGT-ATCTACTTANTCGATCAGTAGCTG---------------TCAATGTGCA-GT-GATTAG-GCCTCTAGTA-ATTTGTACAT--GTAAATATAACGTTTC-TTAGCATATCATA-AAA--TGT-A---CTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAA----ANA-TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAGTTTA-AAA-GCCGATATTT-CATCTAATG--TA-CGTGTATTTT--AAAACGTA-AG-TACCANTG--TA-ATA-TTCACCGTCGC-GTCAACGTA-ACGTCAAATGTCTCTCT----TTTT-AC-GTCTGTG----ACACGAC--GTGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTTNA-T-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-G-GCACGGT-GTGAC-ATTC----AN----TGTTGA--CTCC-GTAG-----ATTGNCTNAAAAA--CCG--ACGAA-TT-TTAACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATA--TT--AATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTAA-----T-AT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACAT-AGGT--TACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CAACTAT------AACCNA---TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATACATGA---------------AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATAGTCCAGTCAATTTTTCAACCAACCTCAAGAAAATTGCAACACAA
Alignments
lowQualScore : 1 11 5555555555555555555555555555555555 111 44444444444444444 1111 22 1 11 1 11 11111 11111 1 888888888888888888888888 1111 11 111 1 111 1111 333333 1 11111111 2222 11 11 22222 11111 11 1 1111 111 111 22222 1111 22222 111 1111111111 11 1111111 1111 111 111 1 3333 444444444444 11 1111 2 22222 11 111 11 1 11 22222 333333333333 11 11 22222 22222222 11 1 111 11 11 111 11 5555555555555555 1111 1111 111 111111 1 1 2222 11 11 11 111 222 4444444 1 1 1 11 333333333 1 11111 111 11 111 11111 3333333333333333 11111111 555555555555555555555 11 1111111 1111111111111 1111111 2222222222222222
lowQualScore : 3 3 22 2 0 5555555555555555555555555555555555 3 8888 111 6 0 1 77 999 5 6 99999999999999999 5 5555 5 3 99 0 8 0 0 5 00 0 6 0 8 1 6 11 88888 22 3 8 11111 0 444444444444444444444444 1 3 6 99 6 1 4444 3 11 8 6 444 5 99 8 6 8 0 8 8 8 222 8 6 5555 8 8 1 888888 0 8 0 33333333 2 6 7777 44 55 0 5 00000 888 44444 00 5 5 6 6 6 6 1 99 6 3 6 4444 7 7 99 111 111 00000 99 8 7777 1 55555 8 0 8 8 6 6 999999 6 3 6 1 222 5 1 5 5 3 5 9999999999 99 5 5 7777777 1 6 77 77 2 5 77 2222 6 5 000 000 5 0 0 8 3 8 9999 8 8 111111111111 8 0 8 8 11 8 3333 8 0 0 55555 11 444 0 0 11 5 0 11 55555 0 000000000000 00 33 8 3 888 3 33333 55555555 22 2 3 0 0 2 111 33 11 0 0 444 11 8 8 7777777777777777 6 6 6 5 5 5 1 5 6666 5 99 2 2 5 5 5 5 6 99 6 6 6 4444 111 6 555555 1 3 0 2 8 0 2 1111 33 33 33 444 6 7 333 1 3333333 3 3 3 88 6 000000000 3 7 6 1 66666 6 5 111 1 5 1 22 4 4 66 1 4 4 222 77 55 33333 55 55 0000000000000000 66666666 66 4 66 66 33 666 4 0 3 000000000000000000000 11 0 4 4 4 8 9999999 0 4 66 0 55 3 6 3 55 0 3 3 666 7777 11 11 8888888888888 3 4 777 4 2222222 1111111111111111 55 66 8 4 4 66 66 5
lowQualScore : . . .. . . .................................. . .... ... . . . .. ... . . ................. . .... . . .. . . . . . .. . . . . . . .. ..... .. . . ..... . ........................ . . . .. . . .... . .. . . ... . .. . . . . . . . ... . . .... . . . ...... . . . ........ . . .... .. .. . . ..... ... ..... .. . . . . . . . .. . . . .... . . .. ... ... ..... .. . .... . ..... . . . . . . ...... . . . . ... . . . . . . .......... .. . . ....... . . .. .. . . .. .... . . ... ... . . . . . . .... . . ............ . . . . .. . .... . . . ..... .. ... . . .. . . .. ..... . ............ .. .. . . ... . ..... ........ .. . . . . . ... .. .. . . ... .. . . ................ . . . . . . . . .... . .. . . . . . . . .. . . . .... ... . ...... . . . . . . . .... .. .. .. ... . . ... . ....... . . . .. . ......... . . . . ..... . . ... . . . .. . . .. . . . ... .. .. ..... .. .. ................ ........ .. . .. .. .. ... . . . ..................... .. . . . . . ....... . . .. . .. . . . .. . . . ... .... .. .. ............. . . ... . ....... ................ .. .. . . . .. .. .
lowQualScore : 3 2 00 5 2 5555555555555555555555555555555555 2 8888 777 7 7 7 99 777 7 7 22222222222222222 0 7777 7 8 00 6 0 6 8 6 44 8 0 6 0 4 0 00 55555 88 0 8 22222 0 555555555555555555555555 0 7 0 22 7 0 2222 8 00 0 0 000 6 00 0 0 0 6 0 0 0 444 0 0 8888 0 0 0 000000 6 0 8 88888888 5 7 2222 55 88 1 7 66666 666 33333 11 7 7 7 7 7 7 0 22 7 3 7 8888 8 5 88 777 777 00000 00 0 0000 0 44444 0 6 0 0 7 7 777777 7 2 7 0 333 7 4 0 7 6 7 7777777777 33 7 7 6666666 0 6 99 99 7 7 00 1111 6 7 000 000 0 8 8 0 8 0 0000 0 0 000000000000 0 8 0 0 00 0 4444 0 0 8 88888 00 000 8 8 00 6 0 00 88888 8 666666666666 88 88 0 2 222 2 88888 00000000 55 5 2 8 0 5 000 88 00 8 6 000 00 0 0 2222222222222222 7 7 7 7 7 7 7 7 6666 7 11 2 5 0 0 0 0 7 22 7 7 7 2222 777 7 888888 7 3 8 5 8 2 8 2222 88 88 88 000 7 3 333 0 0000000 3 3 3 33 7 333333333 3 3 5 0 77777 7 7 444 4 7 7 22 4 4 11 0 0 0 111 99 55 22222 55 55 7777777777777777 11111111 11 4 11 11 88 999 4 2 2 555555555555555555555 99 1 4 4 4 9 0000000 8 4 11 7 55 6 6 6 00 5 6 6 444 7777 77 44 6666666666666 6 4 111 4 9999999 9999999999999999 55 11 9 4 4 11 11 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GTC--TAG-TCTTTATTCTTTTGTT---TG-TCGCATTCGTTT--ATTA--AT-TTTAGT-ATCTACTTANT------CG------ATCAGTAGCTG--TCAA-TGTGCA-GTGATTAG-GCCTCTAGTAATTTGTACATGTAAATATAACGTTTCTT-AGCATATCATA-AAA--TG---T-ACTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAA----ANA-TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAG-TTTAAAA-GCCGATATTT-CATCTAATG--T-ACGTGTATTTT--AAAACGTA-AG-TACCANTGAG--T-AATA-TTCACCGTCGCGTCAACGTA-ACGTCAAAT--GTCTCTC-TTTTTAC--GTCTGTGA-CAC---GAC-G-TGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTT-NAT-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-GGCACG-GT-GTGAC-ATTC----A----NTGTTGA--CT-CC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAATT-TT-AACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATATTTA--AATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTAT--A-TAT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACATAGG---TCTACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA-A--TAT-AACCN-A---TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATA--------CA--TG----A--AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
Reference ( family-5838 ) : NNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTCTT-CTCAACTCTTGGGTTGTT-CGATTGGGGAGGGGGG-------------TGTTTTTTA---GT---TGG-TCTTTATTCTTTTGTT---TG-TCGCATTCGTTT--ATTA--AT-TTTAGT-ATCTACTTANT------CG------ATCAGTAGCTG--TCAA-TGTGCA-GTGATTAG-GCCTCTAGTAATTTGTACATGTAAATATAACGTTTCTT-AGCATATCATA-AAA--TG---T-ACTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTGAGTTTATC-----C------GAA----ANA-TTTTCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAN-A-ATAGTAA-GTTGTTTTAG-TTTAAAA-GCCGATATTT-CATCTAATG--T-ACGTGTATTTT--AAAACGTA-AG-TACCANTG----T-AATA-TTCACCGTCGCGTCAACGTA-ACGTCAAAT--GTCTCTC-TTTTTAC--GTCTGTGA-CAC---GAC-G-TGTTGAC-----ATTCANTTT-TT-TGTTGCAATTTT-GTAA-T-TGT-TAGAGTGNATA--TATTTTGAA-TTAAAGA-AA-ATA---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATATTT-----AGTTGTCTT-NAT-TTGTGTT----AATTGAATAT---GC-TTTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGTNACGTATTACA--TTTAC-GGCACG-GT-GTGAC-ATTC----A----NTGTTGA--CT-CC-GT----AG-ATTGNCTNAAAAA--CCG--ACGAATT-TT-AACTGAATCAACTC----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATATT----AATG-GTGT-ATA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TCGATTCA-ATGCAATATCGTA---A-TAT--CTGTG---ACGTTTTGAACGTC--AAATCATCACTGGTGAC--ACATAGG---T-TACATTGC-ATATC-A--T-GTAAC-TTTGAC--TATAA-ACTACATGTCA-TGTCAAAAGTCTGTTCA-A-AAA-TCGTTC-ACAAGTAATCTAAAAA-CCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA-A-CTAT-AACCN-A---TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAACCATTTATCGACATATGAATTCAAATTTTCGATA----AATT--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTANTAG--TG--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATA--C--ACTA-GATGACATCACAATTTTAATAATGTATATCATCANCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TNAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TAT--TTACGT--AAATATCCGAATAT--TCAA-GCCAATA--------CA--TG----A--AT--TTCG-C-ATT-TTAAAAA-A----TG-TATT-GATA--TCGAAATGGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TATATTA---A---------A-GTGTTTTTATTCA-TATAAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAACAGC--GTG-CGCGGC
gi|1 : TTTTTTTTCTTTCTCAACTCTTGGGT-GTT-TGATTGGGGAGGGGGG-------------TGTTTTTTG---TC---TAG-TCTTT----TTTTGTT---TG-TTGCATTCGTTT--ATTT--AT-TTTAGT-ATCTACTT-------------------TAGTAGCTG--TCAA-AGTGCA-GTGATTAG-GCCTCTAGTAATT-GTACATGTAAATATAACATTGCTTTAGCATATCAAA-AAA--TG---T-ACTTGTATGCATATCGAATGC-ATT-CTAATACTT-TCTAAGTTTAT-------------------------TTTTAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-AT-GTAA-GTTGTTT-AG-TTTAAAA-GCCGATATTT-CATCTAATG--T-GCG-GTATTTT--AAAACGTA-AG-TACCACTGAG--T-AA-A-TTCACCGTCACGTCAACGTA-ACGTAAAAT--GTCTTT---TTTTAC--GTCTGTGA-CAT---GACCG-TGTTGAC-----ATTCATTTTGTT-TGTTACAATTTTTGTAA-T-TGT-TAGAGTGGATA--TATTTTGAA-CTAAAGA-AA-ATA---CTTTTTCATGACAAGCACATTT-AAGA---AA---AATATCT-----AGTTGTCTT-CAT-TTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TG--GCT-CAATTTCCAGTAAGGTATTACA--TTTAC-GGCACG-GT-GTGAC-ATTC----A----GTGTTGA--CT-CC-GT----AG-ATAGACCAAAAAA--CCG--ATTAATT-CT-AACTGAATCAATTT----AAATTTCCTGTCGCG-AT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATATTTA--AATG-GTGT-ACA------------CTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGATTCA-ATG-AATATCGTATAAA-TTT--ATCTG---ACGTTTTGAACGTC--AAATCGTCACTG---AC--ACATAGG---TCTTCATTGC-ATATC-A--TTGTAAC-TTTGAC--TATAA-ACTACATGTCA-TATCAAAAGTCTGTTCATA-AAA-TCGTTC-ACAAGTAATCTAAAAATCCTATTTCT-A-AAATCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAT--ATAACC-CA-A------AACCT-----TT-AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTA---AA-ACGTTGTGACACACAATCTCATTAATATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CAAGTA--TGAT-GAAG-TAT-T----TATC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTC-AAAAGCATTTATCGACATATGAATTCAAATTTTGGATA----AATT--ATT--CAG--AATTC-T-CACACATGTCCGAATGTATCTACAA---TGCGTACTA----G--TATTCC-ACACGTTAAGGTTT-ATCTACACC-CCC--TTCTTGCATTCTGTGTCAGCGTCTACAGCATACGC--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAATCT-----TAA-TT-ATTCTGCAAAATTTTGT--GTTTGTGTCA-TAAG--TTATAAGAAA-GC-TA--TCAACATTTTGGT-A-AAG-TGTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CACG--CAA-TAT--TTACGT--AAATATCCGAACAT--TCAA-GGCAATA--------C---------A--AT--TTCG-C-ATT-TTAAACA-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATG-ACC--TCAC-A-TGAT-ATG---CAGCTTTCC---TATATTG---A---------A-GTGTTTTTATTCA-TGTAAAT--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGACA--CCAGCAGC--GTG-CGCGGC
gi|10 : gatccactatgatttgcggacttT-GTTCTTCAAACGTTTGT--GTTTGTATTG-TTAAAATCTTAAGGAA-TT-TG--TTCACATTTTGGT-A-AGG-CTTGTG-----C--AAT---AT--TT--A--C-----------------------------TG--CAA-CATCTTTATGT--AAATAT------A-----AA-G---ATA--------TA--TG----A--AC--TAGGAC-ATT-TTAAAAAGA----CG-TATT-GATA--TCGATATGGATCTAG-AACGTAAGGTT-A--G-CCCTAA-TGAA-ATG---TAACGTTCG---TGTACTA---ATTATAATTGATGCGCCTTTATTCA-CATAAA---CAG-CGTACACTCTACC-------TAA----T-C---------ACGC--GC--AA-TA-CGAA-CTGGCA--CTACCGGC--GCG-CGCGGC
gi|11 : CACCACAATCT-----TAA-TTTATGCTTCAAAATTTTGCTCGGTTGTGTCAGTTAGGTTTTTAAGAAAAGC-TAATCAAATATTTTGGTTACAAG-TGTGTGTG-AACCAACCAAAGTCGTT--A--C-GGT------------CTGTAAATCAGCATGACCAAATAT--TTACGT--CAAAATCCGAACATCCTCAAGGCCAATA--------CAATTA----ATCAT--TTCG-C-ATT-TT--AAG-A----TG-TCTT-TTTAAGTTACAATCGAT--AA-AATGT-AGATT-ACCT-TCACAA-TGAT-ATAGTTTAGCTTTCC---TTCGTTAGATA---------A-GTGTTTTTAgctctta
gi|12 : ttgtcTTGGGTTTTTACAGTTTGGGA----------------------TTTTTAAAAGTCTATAT-TCTTTATTCTTTAGTT---TA-TCGCAT-CGTTT--ATTC--AT-TTTAGT-ATTTACTTATT------CGTATCCGATCAGTAGCTG--TCAA-TGTGCAAGTGATTAG-GCCTCTAGTAATTTGTACATGCAAATATAACGTCTCCT-AGCATATCATATAAA--TG---T-ACTCGTATGCATATTGAATGC-ATT-CAAATACTT-TCTAAGTTTATC-----T------GAATACGAAATTTTTCAAATTCAGTTTTGAATACCATTA--T-GTTGCA----TA
gi|13 : ATAA-ACTACATGTCA-TATCAAAAATCTGTTCA-A-AAAATCGTTC-ACACGTAATCTAAAAT-CCTATTTCT-A-AAACCC--TTTTAATTTAA--CACAAACC---GTTAACTCAAA--ATAACC-CA-A------AACCT-----TT-AC-TATCA-GAC-A-TTTTGAA-AGAGTA-ACTTT---AA-ACGTTATGACACACAATCTCATTAATATAACCGCTAT-GAAT-ATT-CCACATA-TCAGG-CACGTA--TGAT-ACAG-TAT-TTCAGTATC---TTTTCTTTAAGT----A-TAGTTATTTTCATTTC-AAAACCA
gi|14 : T-A-AAGATGTGCGTGTTAC--GTT---ATCGTT--A--CCAGTACATGTACACGCCTA--------CATG--CAA-TAT--ATAT-C--AAATATCACAATAT--TCAA-GCTAATA--------CA--TGTTA-G--ATAATTCA-CGATT-TTGCAAA-A----TA-CGTT-GATA--TCAAAATGCAT--AG-A----AAAACT-ACCG-TCAAAA-TGAT-ATG---TAACTTTTG---TATAGAA---A---------A-GTA-TTTTGCTCA-TATAAAA--CAG-CGTACATGCTGCC------GTAA----T-G---------ATCT--GGAAAA-AA-ATTGTTTAACA--CCAACAGC--GTG-
gi|15 : ATCAGAATTT-----TG--CT-ATCCTGCCAAATTGTAG--GTTTTTGTTA-T-AG--T-----GA-----------TGACATATTCAT-A-ATA-TGTCTATATTAC--ACT---CTCCTTGTA--TCTGT------------CTA--------CATA--CGA-TAA--TTGTGA--AAATGTAGAAATAG--TCAA-GCCAATATAGGCCTACA--TACAAAA--AT--TTCA-C-ATTCTTAAAAA-A----T---ATT-GCTA--TCAAAATGGAT--AG-GATGT-AAATT-ACT--TCAAAAGTGAT-ATG---TAACCTTCG---TGTATTA---A---------A-
gi|16 : TCG-C-ATT-TTAAAGA-AGTA-TAATATT-GATA--TTGAAATGGAT--AT-AATGTCAAATT-ACCG-TAAAAA-TGATAATG---CAACTTTCC---T---------------------GTGTTT------------AAA--CAG-CGTAAATGCTACC------ACAATCCTT-T---------GTACGTGT--AATTA-CGTA-TTGACA--CCAATAGC--GTG-actgcgcaaatgttacgt
gi|17 : TTTTTTTTCTT-CTCAACTCTTGGGTTGGT-TGATTGGGGAGGAGGGTTGTGTGTTTGGTTGTTTTTTA---GTC--TAGTTCTTTATTCTTTTATT---TG-TTGCA-CCATTT--ATTA--AT-TTTAGT-ATCTACTTAGT------CA------ACT--TAAC-G--TCAA-atga
gi|18 : TTAATTTAA--CAAAAACC---GTTTACTCGGT--ATAACC-AA-AGTTATTAACCA-AACATC-AT-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTAACA----------------------CTAT-GAAT-AAT-CCACGTA-
gi|19 : CAATCTCATTAATATAACCGCTAT-GAAT-AAT-TCACATA-TCAGG-CACGTA--TGAT-ACAT-TAT-T----TATC---TTTTC-TTAATTAAGAA-TAGTTATTTTCATTTC-AAAACCATTTAT
gi|2 : TTTTTTTGTTGTATG-TCG-ATTTGCTT--ATTATTATCTTTA---ATTTAATT-CT------CGGTATG-ATCAGTAGCTA--TCAGCTG-GCA------TA-----TTT-GTAATTTGTA-------A-ATAACGATTTTT-AACATATCATACAAACCTG---TCACTTGTAT-----TC-AATGTTATTACTAATATTTCTCTGAGGTTATT-----TTCAAAAGAA----ACA-TTTTGAAATTTAATTT--GAT-TCATTG--TTGTGGCA----TA-TTG--TGT-TGAT-G---TATTACCAC-ACATAGTAACGCTGTTTTAG-TTTAAAAAGCTAACATTTTCATATAATA--T-ACGTGTATTTC--GAGAC-TC-AG-TACCAGTGC---T-AATAATTCACCGCTGC-----TGTA-A-ATTA-----GTCTCTC-TTTTTACC-GTCC-TGA-CAC----AC---TGTTGACCCAACATTTTTTTT-TTCTTTTGCAATTTT-CTAA-T-TGCCTAGAATGCAAC--CATTTTGAC-TTAAAGA-AACATACTTTTTTTTCAAGACT-GCACGGTTGAAGAGAAAA---AAAAATT-----AGTTGTCCT-AAT-TTGTGCT----AATTGAATAT---CC-GTTATCGCGACGATTAG-TTTATAAGACA---TATTATTACAATTGCAA-TTACGTATTACAGTTTCACGGGCACG-TC-GTGGCAATTCCCAAA----TTATTGAACCT-CTGGTACAAAA-ATTTGTTCAAAAC--CAA--ACAAATT-TT-AATTGAAT-AATTCCTCGGAATTTCCTGTCGCG-ATCGCAA---AACCT---TT-------CTCCGTAAATGTATATCTTTAAATG-GTGTAATG------------CTAC-ATGTATTACA-TTTCTTAAA--TGACTACTTGGATTCACATGCAATATCGTA---ATTATGCCTGTG---ACGTCGTGAACGTC--CAATCAGCACTGGTGACCGCCATAGG---T-TACA-TGC------------GTAACGCTTGAC--TATAA-ACTAAAT-----TGCC---------TCCA-GCAAA-TCATTCAACAA--AA---AAAAA-C--ATTTCT-ATGAATCTCGTTTTAATTTAA--AACAACCCAGTGCTAATTGAATTCATAACCACACA-CTAT-AGTCA-A---TT-AT-AGTCA-GAC-ATTTTTGAACAG-ATAGGCTTGAAAAA-AGACTGTGGCAC-CAATCTCATTAACATAAGCGC-ATCGGAT-AATGCCACACG-CCAAGCCACGTA--TGACAACAGATAT-T----TATCACTCTTTC-TTTAGT----CTTGGTTA--TTCATTTCAAAAACCATTTATCGA-ATATAATTCCAAATGTT-GATATCATAATTAAATT--CAGCAAATACAC-CACATAT
gi|20 : AATCGAT--AG-AATGTAAAATT-ACCG-ACACAA-TGAT-ATG---TAGCTT--C---TATATTG---A---------A-GTGTTTTTAATCC-TCTTAAA--CAG-CGTAGATGCTACC------GTAA----T-G---------GTAC--acatgt
gi|21 : tacTTTTATTCAGTATAAAGAGCAGGCGTAGATGCTACCGGCGCAGTAA----TCGATACCGGCTGTAC--GT--AATTACCTTA-TTGACA--CAAACAGCAAGTGACGCGAC
gi|22 : --TTTTAAGAAT-GT-TA--TGAACATATTGGT-A-A---TATCTGTGCGAC--AT-----TCATT--AATTCA--------------CTA--------CATG--CAA-CAG--TTACGTAAAAATATCAAAATAC--GTAA-G
gi|23 : -GGCAGG-GT-GAGCC-ATTC----A----TTGTTTA--CT-CA-GT----AGGATTATCTCAGAAA--CCG--ACGAATTGTT-CACTAAGTCAACTC----AAATTTCCAGTGTTG-AT---GA---Agt
gi|24 : GCAGG-GT-GAG-C-ATTC----A----TTGTTTA--CT-CA-GT----AGGATTATCTCAGAAA--CCG--ACGAATT-TTTCACTAATTCAACTC----AAATTTCCAGTGTTG-AT---GA---AA
gi|25 : ------ATCAATAGCTC--TCAA-TGTGCACGTGATTAG-GCCTCTAGTAATTTGTACCTATAAATATAACATTGCTT-AGCATATCATA-AAA--
gi|26 : -AATGCCAACTT-ACCG-TCGCAA-TGAT-ATA---CAGCTTTCC---CATATTA---A---------A-GTGTTTT
gi|27 : AA--TTTTAAGAAT-GC-CA--TGGACATTTTGGT-A-A---TATCTGTGTGAC--A-----GTCTTT--A--Cagtc
gi|28 : AC-A-TTTTGAA-AGTGTA-ACTTG---AA-ACGTTGTGACA----------------------CTAT-GAAT-AAT-CCACGTA-ttaa
gi|29 : G-TTT-TAAGATAG--TG--ATT-CAGTTTCAAGTTACGTATTACA--TTTAC-GGCACG-
gi|3 : aTTTTTTA---GT---TGG-T-TTTCT--TTTTGTT---TGATTGCATTCGTTTAAAATA--AA-ATAAGTCATTTACTTATTCATATCCG------ATCAGTAGC-GATTTAA-TGCGCATTTGCTTGGAGCCTCT--T----------TGTAAATATAACG-TTCTT-AACATATGAAA-ATA--TATATT-ACTTGTATGTATCTCCAATAC-A-G-CTAATACTT-CATGAGTTTATCGAATAC------GAA----ATA-TTTTAAAATTCAAATTTG-ATATCATTA--T--TTG-A----TAATTG--T-T-TAATTG---CATCAC-AC-A-ATAGTAA-GTC-TTTTAGTTTTTAAA-GTCAGTATTT-CATCTAACA--TAACGTGTATT-----AAATGTA-AGATACCAGTA----C-AATA-TTCACC----------CGTA-ACGTCAAATA-GTTTCTCATTTTGAC---TC-GTGACCAG---AAC-G-TGTTGAC-----ATCTG--TT-TT-TGCTGGAATTTT-GTAA-TGTGT-AGGAGTGCATA--TATTTTGAAGTTAAAGAGAA-AAA---TCTTTTCAAGACATGCACATTT--AGA---AA---AATCTTT-----AGTTGTCTTGAAT-TTGTGTA----TATAGAAT-T---GC-TTTA-TG-GACGATTGG-TTT-TAAGATAG--TT--ATT-CATTTTC-AGCAACGTATTACA---TTAC--GCACACGT-GTGAC-ATTC----CCGGTCTGTTGAG-CTCCC-GT----AG-ATTGTCTAAAAAA---CG--AAAAATT-TT-AACTGAATCTACTC----AAATTTCCTGTCATGAAT---GA---AATTT-GATTTGCA-CATTCTCTAAATG-ATATT----AATGCGTGC-ATA------------TTAC-ATATA-TACATTTT-TTGAA--TTAC-A--T-GACTCA-ATG-AATATCGTA---A-TAT--CTGAG---ACGTTTTGAACG-CAAAAATTATCACT-GTGAC--ACATAAGGTAT-TACATTAC-AAATT-ATTT-GTAAC-GTTGAC--TATAA-ACTACATGTTGCTGTTAAAA-----TTC--------TTGTT---CAAGTAATCCAAAAA-CCTATTTCTAA-AAATTC--CTTTAATTTAAACCAC-ACCC---GTTAA
gi|31 : tgtAA----T-G---------GTAC--GT--AA-TA-CTTA-TTGGCA--CCAACAGC--GTG-CGCGACtagtccagtccaatttgtcaaccaaacctcaagaaaatttgcaacacaag
gi|32 : TCTGTGG-CAT---GAC-G-TGTTGAC-----ATTCAA-TT-TT-TGTTGCAgtc
gi|4 : TTTCAAATCCA--TTTGTAAATTATTAAAT-GTTGTAGTCTTAGTTAAATGTATAATAGAAATATCATAAACA-ATTTTAA-TTTGTTTTCC-ATCATAA-ACTAATATTG-CATATGATCATT-AAATGTTGATA--AAAATGTACAG-TA--ATCG----TTAATA-T--AACGTT-CGTCA-C-TAGACGTCAA------------TTTTCACATGTGTGTGA-GACATAGAC-GCTGTTGA------ATTTATCTT-TT-TGGTGGGATTTG-ATAAAT-TTT-TTCATTGCCTAAATATCTTGGA-GAACAGATAA-AT----CTTTTTCAAGA-ATGCACA-----AGA---AATGCGACATTCCAAAAAATC--CTT-TATATTCTGTTCCGCGATGAAATATATGGCATTCA-CG-AATGGTTGAATTT-TTACATAGGCTA--TTA-CAATTTCAA-TGACATAATGAA--GTTAA-GAGAAG-GTAGTGAC-ATTT----A----ATGTTGAT-CT-GC-GT----A--ATTGGCT-AAAAA--CCAGAACAAATT-TT-CATAAAATCAACTT----AAACTT-TTGTT-CG-AA---CACCGAATTTCGA-TTACACCATTT--TAAAT--ATAAT----AATG-TTTT-ATAACCAAGAGAAACTTACAAAAAATTACT-TAC-TTAAAATTGGC-A--TCAATTTA-GTACAGT-TCCTA---A-TAA--CGATGAATATGTTTTT-ACGTC--AAATAA-CATTGGTGAC--ACACAA------CATATTTCGATATCAA--T-GTAAA-TTGGACGTTATAATACTACATATTA-
gi|5 : aattcaatataatagcAACTCATT--ATAAAC-CA-A------AACCCCA---TTTACCTATCAAGACCA-TTTTGAA-AGTG-A-ACTT----AA-CCGTTGTGACACACAATCTTATTACCATAAC-GATAT-GAATTAAT-CCACATAATCAAG-CACGTGAGTGAT-AAAA-AATAT----TATC---TTTTC-GTAAGT----A-T-TTTATTTTCATTTTTAAAACCACT-ATC-AGAAATTAATTCAAATTTTTAATG----AAAT--ATTGCCAG--AATTC-CTCACACATAACC-AATGTA-CTACAAACGTATGCATTAA--TGCCTATTTCTACACGTTAAGGTTTGATCTACACC-TCCAATTCTGCCACTCTGAATCAGCGT-TACTGCATA--CTGATTAAGATGACATCATAATTTTAATA-TGTACAT-ATCAACATCAAAATCT-----AAA-TT-AATCTGCAAAATTT-GT--GTT-GTATTA-TTAA--TTTTAAGAAA-ATATA--TTAACATTT-GGT-A-AAG-TGTGTGTG--AC--GCT---GTTGTT--A--C--GA------------CTA--------CAGG--CCA-TAT--T-ACGT--AAAAATCCAAACAT--TCAA--CCAA-A--------CA--TG----A--ATA-TTTG-C-AGT-TTAAAAAGA----TT-TATTTGATA--TCAAAATGGAT--AGGAATGTAAAATTTACCGGTCACAA-TGAT-ATA---TAATTTTCGGTGTATATAA---T---------A-GTGTTTTTAT-CA-TGTAAGA--CAG-CGTAG-TGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-TCGACACCCCAACAGC--GTG-C-CGGatatttaccattctaaaa
gi|6 : -AC-TATCA-GAC-A-TTTTGAA-AGTGTA-ACTTT---TTTACGTTGTGACACACAATCTCATTAACATAACCGCTAT-GAAT-AAT-CCACATA-TCAGG-CACGTA--TGAT-GCAG-AAT-T----TCTC---TTTTC-TTAAGT----A-TAGTTATTTTCATTTA-AAAACCACTTATCGACATATGAATTCAAATTTTCGATA----AATA--ATT--CAG--AATTC-C-CACACATGTCCGAATGTATCTACAA---TACGTAATGGCCTA--TATTCC-ACACGTTAAGGTTT-ATCTACACCGCCC--TTCTTGCATTTTGTGTCAACGTCTACAG------C--ACTA-GATGACATCACAATTTTAATAATGTATATCATTATCATCACAGTCT-----TAA-TT-ATTCTGCAAAATTTTAT--GTTTGTGTCA-TTAG--TTTTAAGAAA-GC-TA--TCAACATTTTGGT-A-AA---GTGTGTGTGAC--ACC---GTCGTT--A--CCGGT------------CTA--------CATG--CAA-TTT--TTACGT--AAATATCCAAATAT--TCAA-GCTAATA--------CAATTA----AT-AT--TTAG-C-ATT-TTGAAAG-A----TG-TATT-GATA--TTACAATCGAT--AG-AATGTAAAATT-ACCG-TCACAA-TGAT-ATG---TAGCTTTCC---TA---------------------------TATTCA-TATAAAA--CGG-CGTAGATGCTACC------GTAA----T-G---------GTAC--GT--AA-TA-CTTA-CTAACA--CCAACAGC--
gi|7 : T-CTCAACTCTTGGGTTGTT-TGATTGGGGAGGGGGG-------------TGTTT--------------G-TTTTTAGTCTTTTGTT---TG-TTGCATT-GTTT--ATTT--AT-TTT
gi|7 : TCAAATTCAGTTTTGAATATCATTA--T-GTTGCA----TAATTG--TGT-TGATTG---TATCACAAG-A-ATAGTAA-GTTGTTT-AG-TTTAAAA-GCCGATATTT-CATCTAATG--T-GCGAGTATTTTTAAAAACGTA-AG-TACCACTGAGTAT-AA-A-TTCACCGTCACGTCAACGTA-ACGTCAAATTAGTCTCTT-TTTTTAC--GTCTGTGA-CAT---GAC-G-TGTTGAC-----ATTCAATTT-TT--GTTACAATTTT-GTAT-T-TGT-TACAGTGGATA--TATTTTGAA-TCAGAGA-AA-ATC---TTTTTTCAAGACAAGCACATTT-AAGA---AA---AATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcaaattcagttttgaatatcattatgttgcataattgtgttgattgtatcacaagaatagtaagttgtttagtttaaaagccgatatttcatctaatgtgcgagtatttttaaaaacgtaagtaccactgagtataaattcaccgtcacgtcaacgtaacgtcaaattagtctctttttttacgtctgtgacatgacgtgttgacattcaatttttgttacaattttgtatttgttacagtggatatattttgaatcagagaaaatcttttttcaagacaagcacatttaagaaaaata
gi|8 : tctcaactcttgggttgtttgattggggaggggggtgtttgtttttagtcttttgtttgttgcattgtttatttattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTT--ATTA--AT-TTTAGT-ATCTACTTAGT------CA------ACT--TAAC-G--TCAA-
gi|8 : gcacGTCAACTTA-ACGTCAAATTTGTCTCCT-TTTTTAC--GTCTGTGA-CA-----GC-G-TGTTGAC-----ATTCAATTT-T--TGTTGCAATTTA-GTAA-T-TGT-TAGAGTGGATA--TATTTTGAA-TTAAAGA-AA-ACA---TTTTTTCAAGACAAGCACAATT-AAGA---AA---AATATTT-----AGTTGTCTT-CAT-GTGTGTT----AATTGAATA----GC-TGTA-CG-GACGATTGG-TTT-TAAGATAG--TA--ATT-CAATTTCAAGGAAGGTATTACA--TTTAC-GGCATG-GT-GTGAC-ATTC----A----GTGTTGA--TA-CC-GT----AC-ATAGGCTAAAAAAACCCG--ACAAATT-CT-AACTGAATCAATTT----AAATTTCCTGTCGCG-GT---GA---AATTTGGATTTGCA-CATTCTGTAAATG-ATATTTA--AATG-GTGT-ACA------------TTAC-ATATATTACA-TTT-TTAAA--TGAC-A--TTGAGTCA-ATG-AATATCGTAT--C-TAT--CTGTG---ACGTTTTGAACGTC--AAACCATCACT-GTGAC--ACATAGG---TCTACATTGC-ATAatttgtctccttttttacgtctgtgacagcgtgttgacattcaatttttgttgcaatttagtaattgttagagtggatatattttgaattaaagaaaacattttttcaagacaagcacaattaagaaaaatatttagttgtcttcatgtgtgttaattgaatagctgtacggacgattggttttaagatagtaattcaatttcaaggaaggtattacatttacggcatggtgtgacattcagtgttgataccgtacataggctaaaaaaacccgacaaattctaactgaatcaatttaaatttcctgtcgcggtgaaatttggatttgcacattctgtaaatgatatttaaatggtgtacattacatatattacatttttaaatgacattgagtcaatgaatatcgtatctatctgtgacgttttgaacgtcaaaccatcactgtgacacataggtctacattgcata
gi|9 : gcaccatttattaattttagtatctacttaTATTATCAACATCGCAATCTACTAGTAAACT-ATTCTGCAAAAATTTA-----------CA-TTAG--TTTTAAGAAA-GC-TA--TTCACATTTTAG--A-AAA-TGTGTGTGTAAC--ACT---GCCGTT--A--CTGGT------------CTA--------CATA--CAA-TAT--TTACGT--AAATAGCCGAATCT--TTAA-GCAAA--------------------A--AT--TCAA-T-ATT-TTAAAAA-AAAGGTT-T-TT-GATA--TAGAAATGGAT--AT-AATGTTCAATT-ACTG-T-AAAC-TGAT-ATG---CAACTTTTG---TAGAATA---A---------A-GTGTTTTTATTCA-TATAAAA--CTG-CG-AGATGCTACT------TTAA-----------------------C--AA-TA--------GACA--CCAACAGC--ATG-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30 ): AATAGTCCAGTCAATTTTTCAACCAACCTCAAGAAAATTGCAACACAA