lowQualScore : 22222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111
lowQualScore : 55 4 1 4 4 4 1 4 444444 1 2222 2 1 1 2 1 33333333333333333333333333333333333333333333333333333 111 1 333 111111 111 2 1 2222 222 4444444444444444444444444444444444444 33333 2222222222 11111111111111 22 2222222 3 2222 2222
lowQualScore : 55 0 7 6 6 0 0 0 5 0 999999 3 0000 4 7 6 2 6 3 6 6 7 3 9 6 3 77777777777777777777777777777777777777777777777777777 666 3 000 6 2 888888 777 6 6 1111 222 2 3333333333333333333333333333333333333 3 6 6 2 88888 5 4 5 1111111111 5 66 4 99999999999999 5 44 7 1 1 0 4 0 5 5555555 5 5 7777 1 66 5 4444 5 66 44
lowQualScore : .. . . . . . . . . . ...... . .... . . . . . . . . . . . . . ..................................................... ... . ... . . ...... ... . . .... ... . ..................................... . . . . ..... . . . .......... . .. . .............. . .. . . . . . . . ....... . . .... . .. . .... . .. ..
lowQualScore : 00 0 0 0 0 0 0 0 0 0 333333 3 0000 0 0 5 2 7 3 7 0 3 3 0 7 3 77777777777777777777777777777777777777777777777777777 777 3 000 0 2 888888 555 7 5 2222 555 2 5555555555555555555555555555555555555 8 7 7 5 33333 7 3 0 1111111111 0 11 4 00000000000000 0 88 3 4 4 7 3 4 7 7777777 7 1 0000 4 99 0 0000 0 99 66
consensus : NTAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TACAAA-TAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAGGC-GAC-ATTGGTTCC-CT-CAAAAATGACCTTATNTTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTT-TCAAATATATACATATGTATTGTGTTCATTTACGTAT-TTAAAAAGTGAAATAAA-TCCAG---------TAA--AGAGTCAAA-AAAAATATCTTGAATCT-CGTTCCGAAG-TTTCGTC-G-GG-ATGG-AATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCGCTTTTCTAATACAATT----GGTA--ATGCGAGCTGTTTAATCGCATTT----------------C-----------TAGAAT--ATCACGT-A-GATGTTTAC-T-CCGAT-GAATTNCATAGTTGAAT-TA-------CTCCC-CTTTACGTATA--CG-GCGTG--CCGT------TAACAACACAAACTATCGA-CGGTTTTCT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATNGTCCGATTTTG-TCCGAT-T---TTT-TG-TATG-TTGTTAATCACGCTTT--TAATCA-TTC--AATT-CCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
Reference ( gi|2 ) : GTAAATTGGATTT-AATAGAAAATGCTTACTCATATGATGAAAGATACAAAATAACTGA-ACTTTTAGCCGAAATG-CTCTCCATATTTTCTTTTT--A-C-AAC-ATTGGTTCCACTTCAAAAATGACCTTATTTTTTATGATTTTGTTGACAATGTTGATTATTTATGAC-TT-TCAAATATATACATATGTATTGTATTCATTTACATAT-TCAAAAAGTGAAAT-AA-TCCAG---------GAACTAGA-TC--------ATGTCTT-AATCTACGGT-CGAAG-TTTCGTC-G-GG-AT-G-AATGTCGACGATGATTACGAGATGCTGGTTATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCAC-TTTCTTATACAATT----GGTC--ATGCAAGCTATTTAATCGCATT-----------------C-----------TAGAGT--ATCATGT-A-GATGTTTAC-G-C-GAT-GAATTGCACAGTTGAAT-TA-------CT-CC-CTTTACGTATA--CG-GCGTC--CCGT------TAACAACACAAACTATCGA-CGGTTTTCTTAAAATATTTAAGTCTAAATTTGAAATATTTCCCATGGTCCGATTTTG-TCCG-T-T---TTT-TGATATG-T-GTTAATCACGCTTT--TAATCA-TT---AATT-CCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|1 : TAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TACAAA-TAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAG-C-GACCATTGGTTCC-CTTCAAAAATGACCTTATATTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTT-TCAAATATATACATATGTATTGTGTTCATTTACA-ATCTAAAAAAGTGAAATAAA-TCCAG---------TAA--AGAGTCAAAAAAAAATATCTTGAATCTTCGTTCCGAAGTTTTCGTC-G-GGAAT-GAAATGTCGACGATGATTATGAGATGTTGGTCATTTTCTCGACCGT--CT--ATATATTTTTCAAACATCACTTTTCTAATACAATT----GGTA--ATGCAAGCTGTTTAATCGCATT-----------------CTTTTAATCACTTAGAAT--ACCATGT-A-GATGTTTAC-GCC-GAT-AAATTGCACAGTTGAAT-TA-------CTCCC-CTTTACATATA--CG-GCGTC--CCGT------TAACAACACAAACTATCGA-CGGTTTTC-TAAAA-ATTTAAGTCTAAATTTGAAATATTTCCCATGGTCCGATTTTG-TCCGAT-T---TTT-TG-TATG-T------------TGT--TAATCA-TTC--AATT-CCATCAAGTT--TGTTTCTGTTGCAATTAGTTTTGAGGTGATTTGCTA
gi|3 : taAATGGCTCTCCATATTTTCTTTTT--AGCGAAT-AGTGGTTCCCCTGCAAAAATGACCTTATTTTTCATGATTTTGTTGAAAATGTTGATCATTTATGACTTT-TCCAATATATCCATATGTATTGTGTTCATTAACATAT-TTAAAAAGTGAAATAAA-TCCAGTAAAGAGTCGAACAAAA-----------ATATCTTGAATC-------------TTTCGTCGG-GG-ATGG-AATGTCGACGATGATTATGAGATACTGGTTATTGTCTCGACCGT--CT--ATA---
gi|4 : -AAC-ATTGGTTCTAAT------ATGACTTTATTTTT-ATGATTTTGTTTACAAT--TAAATATTTATGAC-TTCTCAAATATATA--------TTGTGTTCATTTATGTAT-TTAAAAAATGAATT-AATTCCAG---------TAA--AGAGTCAAACAAAAATATCCT-----TACGTTCCGAAA-TATCTTC-GAGA-ATGG-AATGTTGATGATAATTATGAGATGCTGATCATTTTCTGAATTGTAAAT--ACA---TTTCCAAACATCACTTTTCTGATACACTT----GGTA--ATCCAAGTTGTTTAATTGAATTTTTTAATCACTTAGAAGT-----------TAGAAT--GTCATGT-A-CATGTTTACTC-C-GAT-GGATGTCATAGTTGAAT-TA-------CTCCC-CTTTACGTATA--CG-GCGTG--TCGT------AAACAACACAAACTATCGA-CAGTTTTCTgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttcccatggtccaattttgtccgattttatgtatgttattaatcacgcttttaatcattcaattccgtcaagtttgtttctgttgcaattagtttgaggtgatttgctagattgactagacta
gi|17 : aGACCTTATATTTTATGATTTTGTTGGCAATATTGATCATTTATGA
gi|12 : GATGCTGAGCATTTTCTCAATTGT--TTGCATA---TCTTCAAACATCGC-CTTTCAATACAATTATTAGGTCTTATGTGAGTTATTTCATCACAT
gi|5 : TTCTAATGCAATT----AGTA--ATGCAAGCTGTTTAATCGTATgttt
gi|6 : TTTAGTCGCATTT----------------C-----------T----TTGATCCCTT-A-GAGCGTTAC-T-CCGAT-TAATTTCTTACCTGAATATC-------AT-CC-CTTTACGGATA--CC-TCGTG--CCCT------AAACAACACAAACTATCGA-CGGGTTTCT--AAA-----------AAA----AAATATTTCCCATTGTCCGATTTTG-TCCA-AAT---TTT-TG-TATG-TTGTTAATCACGCTTT--TGATCA-TTCTGAATT-CCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTAAGGTGATTTGCTAGATTGACTAGACTAcgcacagttgaattaccccctctacatatacggcgtcccgttaataacacaaactatcgacggttttctaaaatatttaagtcgaaatttgaaatatttcccatgatccgattttgtccgattttttgtatgttgttaatcacgcttttattcactcaattccgtcaagtttgtttctgttgcaattactttgaggtgatatgctagattgactagacta
gi|9 : gTTAATCGCATT-----------------T-----------T----T--ATCACCTTA-GAT--TTAC-T-CCGAT-GACTTTCACAGTTGAAT-TA-------CTCCC-CTTTATGTATA--CG-GCGTG--CC-T------TAAg
gi|5 : acactttgaaaattacgaaattatgtgAGT--A--ATGC-AAGCTGTTTA-------ATCGTATCGCACAGTTGAAT-TA-------CC-CC-CTCTACATATA--CG-GCGTC--CCGT------TAATAACACAAACTATCGA-CGGTTTTC-TAAAATATTTAAGTCGAAATTTGAAATATTTCCCATGATCCGATTTTG-TCCGAT-T---TTT-TG-TATGTT-GTTAATCACGCTTT--TATTCACTC---AATT-CCGTCAAGTT--TGTTTCTGTTGCAATTAC-TTTGAGGTGATATGCTAGATTGACTAGACTAtcg
gi|11 : ttctaatgcaattCATGT-A-GATGTTTAC-T-CCGAT-GAATTGCATAGTTGCAT-TACATGTACCC-CC-TTTTACAAATA--CG-ACGTG--CCGCTACATATAATAACACAAACTATTGA-C
gi|15 : AT-GACCTCCATGGTTGAGT-TT-------CT-TCTCTTTACATGCA--CG-GCGTG--TCTT------AAACACCACAA
gi|7 : actcATAGCTGGGT-TA-------TT-CC-CTATACAAACA--CG-GTGTA-------------AACACTTCAAAATATCAA-TGGTTCACT-AAAATATTCAAGCCTCAATTCG-----TCTTC-----TTTGAATTTGATTCA-T-TTCATTT-TGGTATG-TAATTAATCATTCTATCGTAATGT-TC---TATT-TTGTCGAGTTTATGTTGCTATTGC
gi|13 : CGTATAATCGAGCGTCGACCGT------TAACAACACAAACTATCGAACGGTTTTCTAAAAATATTTAAGTCT-------AAATATTGCCCATtcaga
gi|8 : ACTATCGT-CGGTTTACT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATTGTCCAA-----------T-T---TTT-TG-TATGTT-GTTAATCA----TT--CAAT----------------TCAAGTT--TGTTTCTATTGCAATTAA-TTaaaaat
gi|18 : TTAAGTCTAAATTTTAAATATTTCCCATTGTCCGATTTTatttgtagccaattt
gi|3 : TATTTCCCATGGTCCAATTTTG-TCCG-A-T---TTTATG-TATG-TTATTAATCACGCTTT--TAATCA-TTC--AATT-CCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTAttgta
gi|10 : aatggctctccatattttctttttagcgaatagtggttcccctgcaaaaatgaccttatttttcatgattttgttgaaaatgttgatcatttatgacttttccaatatatccatatgtattgtgttcattaacatatttaaaaagtgaaataaatccagtaaagagtcgaacaaaaatatcttgaatctttcgtcggggatggaatgtcgacgatgattatgagatactggttattgtctcgaccgtctatagatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTG-TCCGAG-T---TTT-TG-TATG-TTGTTAATCACGCTTT--TAATCA-TTC--AATT-CCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCCAGATTGACTAGACTA
gi|14 : ACGCTCT--TGATCA-TT---CATTTCCGTCAAGCT--TGTTT----------------TGAGGTGATTTGCTAGATTGACTATACT
gi|16 : TGTAGCAATTAC-TTTGAGGTTATATAATAGATTGACTCGACTA
gi|19 : tgG-TTTGAGGTGATTTGCTAGATTGACTAGACT
Alignments
lowQualScore : 22 1 2 2 1 4444 111 444444 1 11 22222 222 11 1 1 1 111111 111 222222 999999999999999999999999999999999999 111111 1111111 1
lowQualScore : 77 5 4 0 0 5 2 6 6666 444 444444 8 3 3 2 55 0 9 33 2 55555 8 3 999 3 8 00 0 0 0 6 111111 444 2 0 0 333333 2 5 888888888888888888888888888888888888 0 5 0 8 1 222222 1 2 55 4 666 2 2222222 4 0 5 3 0 4 5 0 66 66 5 0 3 0 66 66 66 4
lowQualScore : .. . . . . . . . .... ... ...... . . . . .. . . .. . ..... . . ... . . .. . . . . ...... ... . . . ...... . . .................................... . . . . . ...... . . .. . ... . ....... . . . . . . . . .. .. . . . . .. .. .. .
lowQualScore : 55 5 0 0 0 0 5 7 3333 000 888888 8 2 2 5 22 0 8 88 5 00000 8 2 222 0 8 22 0 0 0 5 222222 000 0 8 8 000000 8 7 000000000000000000000000000000000000 7 7 7 8 0 888888 0 9 55 0 222 5 7777777 4 0 0 1 1 5 0 2 99 99 0 4 2 9 11 11 11 0
consensus : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT--GGCGA-C-ATTGGTTCC--CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTC-AAACAAAAATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTCT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATGGTCCGATTTTG-TCCGATTT--TTT--G-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
Reference ( family-580 ) : NTAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TACAAA-TAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAGGCGA-C-ATTGGTTCC--CT--CAAAAATGACCTTATNTTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTC-AAA-AAAAATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCGCTTTTCTAATACAATTGGTA------ATGCGAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCATAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTCT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATNGTCCGATTTTG-TCCGATTT--TTT--G-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|1 : TAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TACAAA-TAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAG-CGA-CCATTGGTTCC--CTT-CAAAAATGACCTTATATTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACA-ATCTAAAAAAGTGAAATAAATCCAGTAA--AGAGTCAAAA-AAAAATATCTTGAATCTT-CGTTCCGAAGTTTTCGTC-G-GGAATGAAATGTCGACGATGATTATGAGATGTTGGTCATTTTCTCGACCGT--CT--ATATATTTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTCTTTTAAT----------------CACTTAGAAT--ACCATGT-AGATGTTTACGCCGATAAATTGCACAGTTGAAT------TACTCCCCTTTACATATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTCT-AAAA-ATTTAAGTCTAAATTTGAAATATTTCCCATGGTCCGATTTTG-TCCGATTT--TTT--G-TATGTTG------------T--TAATCATTC--AATTCCATCAAGTT--TGTTTCTGTTGCAATTAGTTTTGAGGTGATTTGCTA
gi|10 : taATTTTG-TCCGAGTT--TTT--G-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCCAGATTGACTAGACTA
gi|11 : CATGT-AGATGTTTACTCCGATGAATTGCATAGTTGCATTACATGTACCCCCTTTTACAAATA--CG-ACGT--GCCGCTACATATAATAACACAAACTATTG-AC
gi|12 : GATGCTGAGCATTTTCTCAATTGT--TTGCATA---TCTTCAAACATCGCCTTTC-AATACAATTATTAGGTCTTATGTGAGTTAT-TTCATCACAT
gi|13 : CGTATAATCGAGCGTCGACCGT------TAACAACACAAACTATCGAACGGTTTTCTAAAAATATTTAAGTCT-------AAATATTGCCCATgttt
gi|14 : ACGCTCT--TGATCATTC--ATTTCCGTCAAGCT--TGTTT----------------TGAGGTGATTTGCTAGATTGACTATACTaaaaat
gi|15 : ACTC--ATGACCTCCATGGTTGAGT------TTCTTCTCTTTACATGCA--CG-GCGT--GTCTT------AAACACCACAA
gi|16 : TGTAGCAATTAC-TTTGAGGTTATATAATAGATTGACTCGACTA
gi|17 : tgGACCTTATATTTTATGATTTTGTTGGCAATATTGATCATTTATGA
gi|18 : TTAAGTCTAAATTTTAAATATTTCCCATTGTCCGATTTT
gi|19 : G-TTTGAGGTGATTTGCTAGATTGACTAGACTttgta
gi|2 : TAAATTGGATTT-AATAGAAAATGCTTACTCATATGATGAAAGATACAAAATAACTGA-ACTTTTAGCCGAAATG-CTCTCCATATTTTCTTTTT---ACAA-C-ATTGGTTCCACTT--CAAAAATGACCTTATTTTTTATGATTTTGTTGACAATGTTGATTATTTATGACTTT-CAAATATATACATATGTATTGTATTCATTTACATATTC-AAAAAGTGAAATAA-TCCAGGAACTAGA-TC-A--------TGTCTT-AATC-TACGGTC-GAAG-TTTCGTC-G-GG-ATG-AATGTCGACGATGATTACGAGATGCTGGTTATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTT-CTTATACAATTGGTC------ATGCAAGCTAT-TTAATCGCATT------------------------C---TAGAGT--ATCATGT-AGATGTTTACGC-GATGAATTGCACAGTTGAAT------TACTCCC-TTTACGTATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTCTTAAAATATTTAAGTCTAAATTTGAAATATTTCCCATGGTCCGATTTTG-TCCG-TTT--TTT--GATATGT-GTTAATCACGCTTT--TAATCATT---AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|3 : gAATGGCTCTCCATATTTTCTTTTT--AGCGAAT-AGTGGTTCC--CCTGCAAAAATGACCTTATTTTTCATGATTTTGTTGAAAATGTTGATCATTTATGACTTTTCCAATATATCCATATGTATTGTGTTCATTAACATATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTC-GAACAAAAATATCTTGAATC--------------TTTCGTCGG-GG-ATGGAATGTCGACGATGATTATGAGATACTGGTTATTGTCTCGACCGT--CT--ATA---
gi|3 : TATTTCCCATGGTCCAATTTTG-TCCGATTT--TAT--G-TATGTTATTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTAgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttcccatggtccaattttgtccgattttatgtatgttattaatcacgcttttaatcattcaattccgtcaagtttgtttctgttgcaattagtttgaggtgatttgctagattgactagacta
gi|4 : aatggctctccatattttctttttagcgaatagtggttcccctgcaaaaatgaccttatttttcatgattttgttgaaaatgttgatcatttatgacttttccaatatatccatatgtattgtgttcattaacatatttaaaaagtgaaataaatccagtaaagagtcgaacaaaaatatcttgaatctttcgtcggggatggaatgtcgacgatgattatgagatactggttattgtctcgaccgtctatagatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-C-ATTGGTTCT--------AATATGACTTTAT-TTTTATGATTTTGTTTACAAT--TAAATATTTATGACTTCTCAAATATATA--------TTGTGTTCATTTATGTATTT-AAAAAATGAATTAATTCCAGTAA--AGAGTC-AAACAAAAATATCCTTA------CGTTCCGAAA-TATCTTC-GAGA-ATGGAATGTTGATGATAATTATGAGATGCTGATCATTTTCTGAATTGTAAAT--ACA---TTTCCAAACATCACTTTTCTGATACACTTGGTA------ATCCAAGTTGT-TTAATTGAATT-------TTTTAATCACTTAGAAGT---TAGAAT--GTCATGT-ACATGTTTACTCCGATGGATGTCATAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GTCGT------AAACAACACAAACTATCG-ACAGTTTTCT-
gi|5 : aaTTCTAATGCAATTAGTA------ATGCAAGCTGT-TTAATCG
gi|5 : -AGCTGTTTAATC----GTATCGCACAGTTGAAT------TAC-CCCCTCTACATATA--CG-GCGT--CCCGT------TAATAACACAAACTATCG-ACGGTTTTCT-AAAATATTTAAGTCGAAATTTGAAATATTTCCCATGATCCGATTTTG-TCCGATTT--TTT--G-TATGTTGTTAATCACGCTTT--TATTCACTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAC-TTTGAGGTGATATGCTAGATTGACTAGACTAtatcgcacagttgaattaccccctctacatatacggcgtcccgttaataacacaaactatcgacggttttctaaaatatttaagtcgaaatttgaaatatttcccatgatccgattttgtccgattttttgtatgttgttaatcacgcttttattcactcaattccgtcaagtttgtttctgttgcaattactttgaggtgatatgctagattgactagacta
gi|6 : ttctaatgcaattagtaatgcaGT-TTAGTCGCATT-------T----------------C---T----TTGATCCCTT-AGAGCGTTACTCCGATTAATTTCTTACCTGAAT------ATCATCCCTTTACGGATA--CC-TCGT--GCCCT------AAACAACACAAACTATCG-ACGGGTTTCT-AAAA------------AA----AAATATTTCCCATTGTCCGATTTTG-TCCAAATT--TTT--G-TATGTTGTTAATCACGCTTT--TGATCATTCTGAATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTAAGGTGATTTGCTAGATTGACTAGACTA
gi|7 : ATAGCTGGGT------TATTCCC-TATACAAACA--CG-GTGT--A-----------AACACTTCAAAATATCA-ATGGTTCACT-AAAATATTCAAGCCTCAATTCG-----TCTTC-----TTTGAATTTGATTC-ATTTCATTTTGG-TATGTAATTAATCATTCTATCGTAAT-GTTC--TATTTTGTCGAGTTTATGTTGCTATTGCg
gi|8 : ACTATCG-TCGGTTTACT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCA----------TTG-TCCAATTT--TTT--G-TATGTTG------------T--TAATCATTC--AAT----TCAAGTT--TGTTTCTATTGCAATTAA-TTtcaga
gi|9 : TGTGTTAATCGCATT-------T----------------T---TA-------TCACCTTAGAT--TTACTCCGATGACTTTCACAGTTGAAT------TACTCCCCTTTATGTATA--CG-GCGT--GCC-T------TAAatttgtagccaattt
Alignments
lowQualScore : 11 1 1 1 1 1 11 2 22222 1 11 222 11 1 1 1 111111 111 222222 888888888888888888888888888888888888 111111 1111111
lowQualScore : 88 5 1 5 5 5 1 6 3 22 0 00000 8 3 3 2 55 0 9 33 2 3 2 8 3 999 3 8 00 0 0 0 6 111111 444 7 0 333333 5 888888888888888888888888888888888888 0 5 0 0 2 1 222222 1 55 4 666 2 2222222 4 5 5 5 3 0 777 1 4 3 0 66 66 66 4
lowQualScore : .. . . . . . . . . .. . ..... . . . . .. . . .. . . . . . ... . . .. . . . . ...... ... . . ...... . .................................... . . . . . . ...... . .. . ... . ....... . . . . . . ... . . . . .. .. .. .
lowQualScore : 55 5 0 5 5 0 0 7 3 77 0 22222 8 2 2 5 22 0 8 88 5 2 5 8 2 222 0 8 22 0 0 0 5 222222 000 0 8 000000 7 222222222222222222222222222222222222 7 7 7 1 5 0 888888 0 55 0 222 5 7777777 4 0 0 0 1 1 888 9 4 2 9 11 11 11 0
consensus : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTC-TTTTTAGCGA-CATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTCAAACAAAAATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
Reference ( family-580 ) : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTC-TTTTTGGCGA-CATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTCAAACAAAAATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|1 : TAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TAC-AAATAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAGCGACCATTGGTTCC-CTT-CAAAAATGACCTTATATTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACA-ATCTAAAAAAGTGAAATAAATCCAGTAA--AGAGTCAAAAAAAAATATCTTGAATCTT-CGTTCCGAAGTTTTCGTC-G-GGAATGAAATGTCGACGATGATTATGAGATGTTGGTCATTTTCTCGACCGT--CT--ATATATTTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTCTTTTAAT----------------CACTTAGAAT--ACCATGT-AGATGTTTACGCCGATAAATTGCACAGTTGAAT------TACTCCCCTTTACATATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAA-ATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTG------------T--TAATCATTC--AATTCCATCAAGTT--TGTTTCTGTTGCAATTAGTTTTGAGGTGATTTGCTA
gi|10 : taATTTTGTCCGAGTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCCAGATTGACTAGACTA
gi|11 : CATGT-AGATGTTTACTCCGATGAATTGCATAGTTGCATTACATGTACCCCCTTTTACAAATA--CG-ACGT--GCCGCTACATATAATAACACAAACTATTG-AC
gi|12 : GATGCTGAGCATTTTCTCAATTGT--TTGCATA---TCTTCAAACATCGCCTTTC-AATACAATTATTAGGTCTTATGTGAGTTAT-TTCATCACAT
gi|13 : CGTATAATCGAGCGTCGACCGT------TAACAACACAAACTATCGAACGGTTTTC-TAAAAATATTTAAGTCT-------AAATATTGCCCATgttt
gi|14 : ACGCTCT--TGATCATTC--ATTTCCGTCAAGCT--TGTTT----------------TGAGGTGATTTGCTAGATTGACTATACTaaaaat
gi|15 : ACTC--ATGACCTCCATGGTTGAGT------TTCTTCTCTTTACATGCA--CG-GCGT--GTCTT------AAACACCACAA
gi|16 : TGTAGCAATTAC-TTTGAGGTTATATAATAGATTGACTCGACTA
gi|17 : tgGACCTTATATTTTATGATTTTGTTGGCAATATTGATCATTTATGA
gi|18 : TTAAGTCTAAATTTTAAATATTTCCCAT-----------TGTCCGATTTTTTG-TA
gi|19 : G-TTTGAGGTGATTTGCTAGATTGACTAGACT
gi|2 : TAAATTGGATTT-AATAGAAAATGCTTACTCATATGATGAAAGATACAAAATAACTGA-ACTTTTAGCCGAAATG-CTCTCCATATTTTC-TTTTTA-CAA-CATTGGTTCCACTT-CAAAAATGACCTTATTTTTTATGATTTTGTTGACAATGTTGATTATTTATGACTTT-CAAATATATACATATGTATTGTATTCATTTACATATTC-AAAAAGTGAAATAA-TCCAGGAACTAGA-TCA--------TGTCTT-AATC-TACGGTC-GAAG-TTTCGTC-G-GG-ATG-AATGTCGACGATGATTACGAGATGCTGGTTATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCAC-TTTCTTATACAATTGGTC------ATGCAAGCTAT-TTAATCGCA-T-------T----------------C---TAGAGT--ATCATGT-AGATGTTTAC-GCGATGAATTGCACAGTTGAAT------TACT-CCCTTTACGTATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTCTT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCG-TTTTTTGATATG-TGTTAATCACGCTTT--TAATCATT---AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|3 : gAATGGCTCTCCATATTTTC-TTTTTAGCGAATAGTGGTTCC-CCTGCAAAAATGACCTTATTTTTCATGATTTTGTTGAAAATGTTGATCATTTATGACTTTTCCAATATATCCATATGTATTGTGTTCATTAACATATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTCGAACAAAAATATCTTGAATC--------------TTTCGTCGG-GG-ATGGAATGTCGACGATGATTATGAGATACTGGTTATTGTCTCGACCGT--CT--ATA---
gi|3 : TATTTCCCATG-GTCCAATTTTGTCCGATTTTATG-TATGTTATTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTAgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttcccatggtccaattttgtccgattttatgtatgttattaatcacgcttttaatcattcaattccgtcaagtttgtttctgttgcaattagtttgaggtgatttgctagattgactagacta
gi|4 : aatggctctccatattttctttttagcgaatagtggttcccctgcaaaaatgaccttatttttcatgattttgttgaaaatgttgatcatttatgacttttccaatatatccatatgtattgtgttcattaacatatttaaaaagtgaaataaatccagtaaagagtcgaacaaaaatatcttgaatctttcgtcggggatggaatgtcgacgatgattatgagatactggttattgtctcgaccgtctatagatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-CATTGGTTCT-------AATATGACTTTAT-TTTTATGATTTTGTTTACAAT--TAAATATTTATGACTTCTCAAATATATA--------TTGTGTTCATTTATGTATTT-AAAAAATGAATTAATTCCAGTAA--AGAGTCAAACAAAAATATCCTTA------CGTTCCGAAA-TATCTTC-GAGA-ATGGAATGTTGATGATAATTATGAGATGCTGATCATTTTCTGAATTGTAAAT--ACA---TTTCCAAACATCACTTTTCTGATACACTTGGTA------ATCCAAGTTGT-TTAATTGAATT-------TTTTAATCACTTAGAAGT---TAGAAT--GTCATGT-ACATGTTTACTCCGATGGATGTCATAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GTCGT------AAACAACACAAACTATCG-ACAGTTTTC-T-
gi|5 : aaTTCTAATGCAATTAGTA------ATGCAAGCTGT-TTAATCG
gi|5 : -AGCTGTTTAATC----GTATCGCACAGTTGAAT------TAC-CCCCTCTACATATA--CG-GCGT--CCCGT------TAATAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCGAAATTTGAAATATTTCCCATG-ATCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TATTCACTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAC-TTTGAGGTGATATGCTAGATTGACTAGACTAtatcgcacagttgaattaccccctctacatatacggcgtcccgttaataacacaaactatcgacggttttctaaaatatttaagtcgaaatttgaaatatttcccatgatccgattttgtccgattttttgtatgttgttaatcacgcttttattcactcaattccgtcaagtttgtttctgttgcaattactttgaggtgatatgctagattgactagacta
gi|6 : ttctaatgcaattagtaatgcaGT-TTAGTCGCATT-------T----------------C---T----TTGATCCCTT-AGAGCGTTACTCCGATTAATTTCTTACCTGAAT------ATCATCCCTTTACGGATA--CC-TCGT--GCCCT------AAACAACACAAACTATCG-ACGGGTTTC-T-AAAA------------AA----AAATATTTCCCATT-GTCCGATTTTGTCCAAATTTTTG-TATGTTGTTAATCACGCTTT--TGATCATTCTGAATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTAAGGTGATTTGCTAGATTGACTAGACTA
gi|7 : ATAGCTGGGT------TATTCCC-TATACAAACA--CG-GTGT--A-----------AACACTTCAAAATATCA-ATGGTTCAC-T-AAAATATTCAAGCCTCAATTCG-----TCTTCTTTGAATTTGATTCATTTCA--TTTTGG-TATGTAATTAATCATTCTATCGTAAT-GTTC--TATTTTGTCGAGTTTATGTTGCTATTGCg
gi|8 : ACTATCG-TCGGTTTAC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCA-----------TTGTCCAATTTTTTG-TATGTTG------------T--TAATCATTC--AAT----TCAAGTT--TGTTTCTATTGCAATTAA-TTtcaga
gi|9 : TGTGTTAATCGCATT-------T----------------T---TA-------TCACCTTAGAT--TTACTCCGATGACTTTCACAGTTGAAT------TACTCCCCTTTATGTATA--CG-GCGT--GCC-T------TAAatttgtagccaattt
Alignments
lowQualScore : 11 1 1 1 1 1 111 22222 1 11 33333333 11 1 1 1 111111 111 222222 888888888888888888888888888888888888 111111 1111111
lowQualScore : 88 5 1 5 5 5 1 6 3 6 444 00000 8 3 3 2 55 0 3 33 2 7 2 8 3 00000000 00 0 0 0 2 111111 444 7 0 333333 5 888888888888888888888888888888888888 0 5 0 0 2 1 222222 1 55 4 666 2 2222222 4 5 5 5 3 0 777 1 4 3 0 66 66 66 4
lowQualScore : .. . . . . . . . . . ... ..... . . . . .. . . .. . . . . . ........ .. . . . . ...... ... . . ...... . .................................... . . . . . . ...... . .. . ... . ....... . . . . . . ... . . . . .. .. .. .
lowQualScore : 55 5 0 5 5 0 0 7 3 7 000 22222 8 2 2 5 22 0 2 88 5 0 5 8 2 55555555 22 0 0 0 5 222222 000 0 8 000000 7 222222222222222222222222222222222222 7 7 7 1 5 0 888888 0 55 0 222 5 7777777 4 0 0 0 1 1 888 9 4 2 9 11 11 11 0
consensus : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTCGAACAAAAATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
Reference ( family-580 ) : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTCAAACAAAAATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|1 : TAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TACAAA-TAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAGCGA-CCATTGGTTCC-CTT-CAAAAATGACCTTATATTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACA-ATCTAAAAAAGTGAAATAAATCCAGTAA--AGAGTCAAAAAAAAATATCTTGAATCTT-CGTTCCGAAGTTTTCGTC-G-GGAATGAAATGTCGACGATGATTATGAGATGTTGGTCATTTTCTCGACCGT--CT--ATATATTTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTCTTTTAAT----------------CACTTAGAAT--ACCATGT-AGATGTTTACGCCGATAAATTGCACAGTTGAAT------TACTCCCCTTTACATATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAA-ATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTG------------T--TAATCATTC--AATTCCATCAAGTT--TGTTTCTGTTGCAATTAGTTTTGAGGTGATTTGCTA
gi|10 : taATTTTGTCCGAGTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCCAGATTGACTAGACTA
gi|11 : CATGT-AGATGTTTACTCCGATGAATTGCATAGTTGCATTACATGTACCCCCTTTTACAAATA--CG-ACGT--GCCGCTACATATAATAACACAAACTATTG-AC
gi|12 : GATGCTGAGCATTTTCTCAATTGT--TTGCATA---TCTTCAAACATCGCCTTTC-AATACAATTATTAGGTCTTATGTGAGTTAT-TTCATCACAT
gi|13 : CGTATAATCGAGCGTCGACCGT------TAACAACACAAACTATCGAACGGTTTTC-TAAAAATATTTAAGTCT-------AAATATTGCCCATgttt
gi|14 : ACGCTCT--TGATCATTC--ATTTCCGTCAAGCT--TGTTT----------------TGAGGTGATTTGCTAGATTGACTATACTaaaaat
gi|15 : ACTC--ATGACCTCCATGGTTGAGT------TTCTTCTCTTTACATGCA--CG-GCGT--GTCTT------AAACACCACAA
gi|16 : TGTAGCAATTAC-TTTGAGGTTATATAATAGATTGACTCGACTA
gi|17 : tgGACCTTATATTTTATGATTTTGTTGGCAATATTGATCATTTATGA
gi|18 : TTAAGTCTAAATTTTAAATATTTCCCAT-----------TGTCCGATTTTTTG-TA
gi|19 : G-TTTGAGGTGATTTGCTAGATTGACTAGACT
gi|2 : TAAATTGGATTT-AATAGAAAATGCTTACTCATATGATGAAAGATACAAAATAACTGA-ACTTTTAGCCGAAATG-CTCTCCATATTTTCTTTTT-A-CAA-C-ATTGGTTCCACTT-CAAAAATGACCTTATTTTTTATGATTTTGTTGACAATGTTGATTATTTATGAC-TTTCAAATATATACATATGTATTGTATTCATTTACATATTC-AAAAAGTGAAAT-AATCCAGGAACTAGA-TC--------ATGTCTT-AATC-TACGGT-CGAAG-TTTCGTC-G-GG-AT-GAATGTCGACGATGATTACGAGATGCTGGTTATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCAC-TTTCTTATACAATTGGTC------ATGCAAGCTAT-TTAATCGCA-T-------T----------------C---TAGAGT--ATCATGT-AGATGTTTAC-GCGATGAATTGCACAGTTGAAT------TACT-CCCTTTACGTATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTCTT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCG-TTTTTTGATATG-TGTTAATCACGCTTT--TAATCATT---AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|3 : gAATGGCTCTCCATATTTTCTTTTT-AGCGAAT-AGTGGTTCC-CCTGCAAAAATGACCTTATTTTTCATGATTTTGTTGAAAATGTTGATCATTTATGACTTTTCCAATATATCCATATGTATTGTGTTCATTAACATATTT-AAAAAGTGAAATAAATCCAGTAA--AGAGTCGAACAAAAATATCTTGAATC--------------TTTCGTCGG-GG-ATGGAATGTCGACGATGATTATGAGATACTGGTTATTGTCTCGACCGT--CT--ATA---
gi|3 : TATTTCCCATG-GTCCAATTTTGTCCGATTTTATG-TATGTTATTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTAgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttcccatggtccaattttgtccgattttatgtatgttattaatcacgcttttaatcattcaattccgtcaagtttgtttctgttgcaattagtttgaggtgatttgctagattgactagacta
gi|4 : aatggctctccatattttctttttagcgaatagtggttcccctgcaaaaatgaccttatttttcatgattttgttgaaaatgttgatcatttatgacttttccaatatatccatatgtattgtgttcattaacatatttaaaaagtgaaataaatccagtaaagagtcgaacaaaaatatcttgaatctttcgtcggggatggaatgtcgacgatgattatgagatactggttattgtctcgaccgtctatagatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-C-ATTGGTTCT-------AATATGACTTTAT-TTTTATGATTTTGTTTACAAT--TAAATATTTATGACTTCTCAAATATATA--------TTGTGTTCATTTATGTATTT-AAAAAATGAATTAATTCCAGTAA--AGAGTCAAACAAAAATATCCTTA------CGTTCCGAAA-TATCTTC-GAGA-ATGGAATGTTGATGATAATTATGAGATGCTGATCATTTTCTGAATTGTAAAT--ACA---TTTCCAAACATCACTTTTCTGATACACTTGGTA------ATCCAAGTTGT-TTAATTGAATT-------TTTTAATCACTTAGAAGT---TAGAAT--GTCATGT-ACATGTTTACTCCGATGGATGTCATAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GTCGT------AAACAACACAAACTATCG-ACAGTTTTC-T-
gi|5 : aaTTCTAATGCAATTAGTA------ATGCAAGCTGT-TTAATCG
gi|5 : -AGCTGTTTAATC----GTATCGCACAGTTGAAT------TAC-CCCCTCTACATATA--CG-GCGT--CCCGT------TAATAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCGAAATTTGAAATATTTCCCATG-ATCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TATTCACTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAC-TTTGAGGTGATATGCTAGATTGACTAGACTAtatcgcacagttgaattaccccctctacatatacggcgtcccgttaataacacaaactatcgacggttttctaaaatatttaagtcgaaatttgaaatatttcccatgatccgattttgtccgattttttgtatgttgttaatcacgcttttattcactcaattccgtcaagtttgtttctgttgcaattactttgaggtgatatgctagattgactagacta
gi|6 : ttctaatgcaattagtaatgcaGT-TTAGTCGCATT-------T----------------C---T----TTGATCCCTT-AGAGCGTTACTCCGATTAATTTCTTACCTGAAT------ATCATCCCTTTACGGATA--CC-TCGT--GCCCT------AAACAACACAAACTATCG-ACGGGTTTC-T-AAAA------------AA----AAATATTTCCCATT-GTCCGATTTTGTCCAAATTTTTG-TATGTTGTTAATCACGCTTT--TGATCATTCTGAATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTAAGGTGATTTGCTAGATTGACTAGACTA
gi|7 : ATAGCTGGGT------TATTCCC-TATACAAACA--CG-GTGT--A-----------AACACTTCAAAATATCA-ATGGTTCAC-T-AAAATATTCAAGCCTCAATTCG-----TCTTCTTTGAATTTGATTCATTTCA--TTTTGG-TATGTAATTAATCATTCTATCGTAAT-GTTC--TATTTTGTCGAGTTTATGTTGCTATTGCg
gi|8 : ACTATCG-TCGGTTTAC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCA-----------TTGTCCAATTTTTTG-TATGTTG------------T--TAATCATTC--AAT----TCAAGTT--TGTTTCTATTGCAATTAA-TTtcaga
gi|9 : TGTGTTAATCGCATT-------T----------------T---TA-------TCACCTTAGAT--TTACTCCGATGACTTTCACAGTTGAAT------TACTCCCCTTTATGTATA--CG-GCGT--GCC-T------TAAatttgtagccaattt
Alignments
lowQualScore : 11 1 1 1 1 1 111 22222 1 11 33333333 11 1 1 1 111111 111 222222 888888888888888888888888888888888888 111111 1111111
lowQualScore : 88 5 1 5 5 5 1 6 3 6 444 00000 8 3 3 2 55 0 3 3 33 8 3 00000000 00 0 0 0 2 111111 444 7 0 333333 5 888888888888888888888888888888888888 0 5 0 0 2 1 222222 1 55 4 666 2 2222222 4 5 5 5 3 0 777 1 4 3 0 66 66 66 4
lowQualScore : .. . . . . . . . . . ... ..... . . . . .. . . . .. . . ........ .. . . . . ...... ... . . ...... . .................................... . . . . . . ...... . .. . ... . ....... . . . . . . ... . . . . .. .. .. .
lowQualScore : 55 5 0 5 5 0 0 7 3 7 000 22222 8 2 2 5 22 0 2 2 88 8 2 55555555 22 0 0 0 5 222222 000 0 8 000000 7 222222222222222222222222222222222222 7 7 7 1 5 0 888888 0 55 0 222 5 7777777 4 0 0 0 1 1 888 9 4 2 9 11 11 11 0
consensus : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
Reference ( family-580 ) : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|1 : TAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TACAAA-TAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAGCGA-CCATTGGTTCC-CTT-CAAAAATGACCTTATATTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACA-ATCTAAAAAAGTGAAATAAATCCAGTAAAGAGTCAAAAAAAA--ATATCTTGAATCTT-CGTTCCGAAGTTTTCGTC-G-GGAATGAAATGTCGACGATGATTATGAGATGTTGGTCATTTTCTCGACCGT--CT--ATATATTTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTCTTTTAAT----------------CACTTAGAAT--ACCATGT-AGATGTTTACGCCGATAAATTGCACAGTTGAAT------TACTCCCCTTTACATATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAA-ATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTG------------T--TAATCATTC--AATTCCATCAAGTT--TGTTTCTGTTGCAATTAGTTTTGAGGTGATTTGCTA
gi|10 : taATTTTGTCCGAGTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCCAGATTGACTAGACTA
gi|11 : CATGT-AGATGTTTACTCCGATGAATTGCATAGTTGCATTACATGTACCCCCTTTTACAAATA--CG-ACGT--GCCGCTACATATAATAACACAAACTATTG-AC
gi|12 : GATGCTGAGCATTTTCTCAATTGT--TTGCATA---TCTTCAAACATCGCCTTTC-AATACAATTATTAGGTCTTATGTGAGTTAT-TTCATCACAT
gi|13 : CGTATAATCGAGCGTCGACCGT------TAACAACACAAACTATCGAACGGTTTTC-TAAAAATATTTAAGTCT-------AAATATTGCCCATgttt
gi|14 : ACGCTCT--TGATCATTC--ATTTCCGTCAAGCT--TGTTT----------------TGAGGTGATTTGCTAGATTGACTATACTaaaaat
gi|15 : ACTC--ATGACCTCCATGGTTGAGT------TTCTTCTCTTTACATGCA--CG-GCGT--GTCTT------AAACACCACAA
gi|16 : TGTAGCAATTAC-TTTGAGGTTATATAATAGATTGACTCGACTA
gi|17 : tgGACCTTATATTTTATGATTTTGTTGGCAATATTGATCATTTATGA
gi|18 : TTAAGTCTAAATTTTAAATATTTCCCAT-----------TGTCCGATTTTTTG-TA
gi|19 : G-TTTGAGGTGATTTGCTAGATTGACTAGACT
gi|2 : TAAATTGGATTT-AATAGAAAATGCTTACTCATATGATGAAAGATACAAAATAACTGA-ACTTTTAGCCGAAATG-CTCTCCATATTTTCTTTTT-A-CAA-C-ATTGGTTCCACTT-CAAAAATGACCTTATTTTTTATGATTTTGTTGACAATGTTGATTATTTATGAC-TTTCAAATATATACATATGTATTGTATTCATTTACATATTC-AAAAAGTGAAAT-AATCCAG---------GAACTAGATCATGTCTT-AATC-TACGGT-CGAAG-TTTCGTC-G-GG-AT-GAATGTCGACGATGATTACGAGATGCTGGTTATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCAC-TTTCTTATACAATTGGTC------ATGCAAGCTAT-TTAATCGCA-T-------T----------------C---TAGAGT--ATCATGT-AGATGTTTAC-GCGATGAATTGCACAGTTGAAT------TACT-CCCTTTACGTATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTCTT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCG-TTTTTTGATATG-TGTTAATCACGCTTT--TAATCATT---AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|3 : gAATGGCTCTCCATATTTTCTTTTT-AGCGAAT-AGTGGTTCC-CCTGCAAAAATGACCTTATTTTTCATGATTTTGTTGAAAATGTTGATCATTTATGACTTTTCCAATATATCCATATGTATTGTGTTCATTAACATATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC--------------TTTCGTCGG-GG-ATGGAATGTCGACGATGATTATGAGATACTGGTTATTGTCTCGACCGT--CT--ATA---
gi|3 : TATTTCCCATG-GTCCAATTTTGTCCGATTTTATG-TATGTTATTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTAgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttcccatggtccaattttgtccgattttatgtatgttattaatcacgcttttaatcattcaattccgtcaagtttgtttctgttgcaattagtttgaggtgatttgctagattgactagacta
gi|4 : aatggctctccatattttctttttagcgaatagtggttcccctgcaaaaatgaccttatttttcatgattttgttgaaaatgttgatcatttatgacttttccaatatatccatatgtattgtgttcattaacatatttaaaaagtgaaataaatccagtaaagagtcgaacaaaaatatcttgaatctttcgtcggggatggaatgtcgacgatgattatgagatactggttattgtctcgaccgtctatagatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-C-ATTGGTTCT-------AATATGACTTTAT-TTTTATGATTTTGTTTACAAT--TAAATATTTATGACTTCTCAAATATATA--------TTGTGTTCATTTATGTATTT-AAAAAATGAATTAATTCCAGTAAAGAGTCAAACAAAA--ATATCCTTA------CGTTCCGAAA-TATCTTC-GAGA-ATGGAATGTTGATGATAATTATGAGATGCTGATCATTTTCTGAATTGTAAAT--ACA---TTTCCAAACATCACTTTTCTGATACACTTGGTA------ATCCAAGTTGT-TTAATTGAATT-------TTTTAATCACTTAGAAGT---TAGAAT--GTCATGT-ACATGTTTACTCCGATGGATGTCATAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GTCGT------AAACAACACAAACTATCG-ACAGTTTTC-T-
gi|5 : aaTTCTAATGCAATTAGTA------ATGCAAGCTGT-TTAATCG
gi|5 : -AGCTGTTTAATC----GTATCGCACAGTTGAAT------TAC-CCCCTCTACATATA--CG-GCGT--CCCGT------TAATAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCGAAATTTGAAATATTTCCCATG-ATCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TATTCACTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAC-TTTGAGGTGATATGCTAGATTGACTAGACTAtatcgcacagttgaattaccccctctacatatacggcgtcccgttaataacacaaactatcgacggttttctaaaatatttaagtcgaaatttgaaatatttcccatgatccgattttgtccgattttttgtatgttgttaatcacgcttttattcactcaattccgtcaagtttgtttctgttgcaattactttgaggtgatatgctagattgactagacta
gi|6 : ttctaatgcaattagtaatgcaGT-TTAGTCGCATT-------T----------------C---T----TTGATCCCTT-AGAGCGTTACTCCGATTAATTTCTTACCTGAAT------ATCATCCCTTTACGGATA--CC-TCGT--GCCCT------AAACAACACAAACTATCG-ACGGGTTTC-T-AAAA------------AA----AAATATTTCCCATT-GTCCGATTTTGTCCAAATTTTTG-TATGTTGTTAATCACGCTTT--TGATCATTCTGAATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTAAGGTGATTTGCTAGATTGACTAGACTA
gi|7 : ATAGCTGGGT------TATTCCC-TATACAAACA--CG-GTGT--A-----------AACACTTCAAAATATCA-ATGGTTCAC-T-AAAATATTCAAGCCTCAATTCG-----TCTTCTTTGAATTTGATTCATTTCA--TTTTGG-TATGTAATTAATCATTCTATCGTAAT-GTTC--TATTTTGTCGAGTTTATGTTGCTATTGCg
gi|8 : ACTATCG-TCGGTTTAC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCA-----------TTGTCCAATTTTTTG-TATGTTG------------T--TAATCATTC--AAT----TCAAGTT--TGTTTCTATTGCAATTAA-TTtcaga
gi|9 : TGTGTTAATCGCATT-------T----------------T---TA-------TCACCTTAGAT--TTACTCCGATGACTTTCACAGTTGAAT------TACTCCCCTTTATGTATA--CG-GCGT--GCC-T------TAAatttgtagccaattt
Alignments
lowQualScore : 11 1 1 1 1 1 111 22222 1 11 33333333 11 1 1 1 111111 111 222222 888888888888888888888888888888888888 111111 1111111
lowQualScore : 88 5 1 5 5 5 1 6 3 6 444 00000 8 3 3 2 55 0 3 3 33 8 3 00000000 00 0 0 0 2 111111 444 7 0 333333 5 888888888888888888888888888888888888 0 5 0 0 2 1 222222 1 55 4 666 2 2222222 4 5 5 5 3 0 777 1 4 3 0 66 66 66 4
lowQualScore : .. . . . . . . . . . ... ..... . . . . .. . . . .. . . ........ .. . . . . ...... ... . . ...... . .................................... . . . . . . ...... . .. . ... . ....... . . . . . . ... . . . . .. .. .. .
lowQualScore : 55 5 0 5 5 0 0 7 3 7 000 22222 8 2 2 5 22 0 2 2 88 8 2 55555555 22 0 0 0 5 222222 000 0 8 000000 7 222222222222222222222222222222222222 7 7 7 1 5 0 888888 0 55 0 222 5 7777777 4 0 0 0 1 1 888 9 4 2 9 11 11 11 0
consensus : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
Reference ( family-580 ) : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|1 : TAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TACAAA-TAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAGCGA-CCATTGGTTCC-CTT-CAAAAATGACCTTATATTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACA-ATCTAAAAAAGTGAAATAAATCCAGTAAAGAGTCAAAAAAAA--ATATCTTGAATCTT-CGTTCCGAAGTTTTCGTC-G-GGAATGAAATGTCGACGATGATTATGAGATGTTGGTCATTTTCTCGACCGT--CT--ATATATTTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTCTTTTAAT----------------CACTTAGAAT--ACCATGT-AGATGTTTACGCCGATAAATTGCACAGTTGAAT------TACTCCCCTTTACATATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAA-ATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTG------------T--TAATCATTC--AATTCCATCAAGTT--TGTTTCTGTTGCAATTAGTTTTGAGGTGATTTGCTA
gi|10 : taATTTTGTCCGAGTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCCAGATTGACTAGACTA
gi|11 : CATGT-AGATGTTTACTCCGATGAATTGCATAGTTGCATTACATGTACCCCCTTTTACAAATA--CG-ACGT--GCCGCTACATATAATAACACAAACTATTG-AC
gi|12 : GATGCTGAGCATTTTCTCAATTGT--TTGCATA---TCTTCAAACATCGCCTTTC-AATACAATTATTAGGTCTTATGTGAGTTAT-TTCATCACAT
gi|13 : CGTATAATCGAGCGTCGACCGT------TAACAACACAAACTATCGAACGGTTTTC-TAAAAATATTTAAGTCT-------AAATATTGCCCATgttt
gi|14 : ACGCTCT--TGATCATTC--ATTTCCGTCAAGCT--TGTTT----------------TGAGGTGATTTGCTAGATTGACTATACTaaaaat
gi|15 : ACTC--ATGACCTCCATGGTTGAGT------TTCTTCTCTTTACATGCA--CG-GCGT--GTCTT------AAACACCACAA
gi|16 : TGTAGCAATTAC-TTTGAGGTTATATAATAGATTGACTCGACTA
gi|17 : tgGACCTTATATTTTATGATTTTGTTGGCAATATTGATCATTTATGA
gi|18 : TTAAGTCTAAATTTTAAATATTTCCCAT-----------TGTCCGATTTTTTG-TA
gi|19 : G-TTTGAGGTGATTTGCTAGATTGACTAGACT
gi|2 : TAAATTGGATTT-AATAGAAAATGCTTACTCATATGATGAAAGATACAAAATAACTGA-ACTTTTAGCCGAAATG-CTCTCCATATTTTCTTTTT-A-CAA-C-ATTGGTTCCACTT-CAAAAATGACCTTATTTTTTATGATTTTGTTGACAATGTTGATTATTTATGAC-TTTCAAATATATACATATGTATTGTATTCATTTACATATTC-AAAAAGTGAAAT-AATCCAG---------GAACTAGATCATGTCTT-AATC-TACGGT-CGAAG-TTTCGTC-G-GG-AT-GAATGTCGACGATGATTACGAGATGCTGGTTATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCAC-TTTCTTATACAATTGGTC------ATGCAAGCTAT-TTAATCGCA-T-------T----------------C---TAGAGT--ATCATGT-AGATGTTTAC-GCGATGAATTGCACAGTTGAAT------TACT-CCCTTTACGTATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTCTT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCG-TTTTTTGATATG-TGTTAATCACGCTTT--TAATCATT---AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|3 : gAATGGCTCTCCATATTTTCTTTTT-AGCGAAT-AGTGGTTCC-CCTGCAAAAATGACCTTATTTTTCATGATTTTGTTGAAAATGTTGATCATTTATGACTTTTCCAATATATCCATATGTATTGTGTTCATTAACATATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC--------------TTTCGTCGG-GG-ATGGAATGTCGACGATGATTATGAGATACTGGTTATTGTCTCGACCGT--CT--ATA---
gi|3 : TATTTCCCATG-GTCCAATTTTGTCCGATTTTATG-TATGTTATTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTAgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttcccatggtccaattttgtccgattttatgtatgttattaatcacgcttttaatcattcaattccgtcaagtttgtttctgttgcaattagtttgaggtgatttgctagattgactagacta
gi|4 : aatggctctccatattttctttttagcgaatagtggttcccctgcaaaaatgaccttatttttcatgattttgttgaaaatgttgatcatttatgacttttccaatatatccatatgtattgtgttcattaacatatttaaaaagtgaaataaatccagtaaagagtcgaacaaaaatatcttgaatctttcgtcggggatggaatgtcgacgatgattatgagatactggttattgtctcgaccgtctatagatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-C-ATTGGTTCT-------AATATGACTTTAT-TTTTATGATTTTGTTTACAAT--TAAATATTTATGACTTCTCAAATATATA--------TTGTGTTCATTTATGTATTT-AAAAAATGAATTAATTCCAGTAAAGAGTCAAACAAAA--ATATCCTTA------CGTTCCGAAA-TATCTTC-GAGA-ATGGAATGTTGATGATAATTATGAGATGCTGATCATTTTCTGAATTGTAAAT--ACA---TTTCCAAACATCACTTTTCTGATACACTTGGTA------ATCCAAGTTGT-TTAATTGAATT-------TTTTAATCACTTAGAAGT---TAGAAT--GTCATGT-ACATGTTTACTCCGATGGATGTCATAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GTCGT------AAACAACACAAACTATCG-ACAGTTTTC-T-
gi|5 : aaTTCTAATGCAATTAGTA------ATGCAAGCTGT-TTAATCG
gi|5 : -AGCTGTTTAATC----GTATCGCACAGTTGAAT------TAC-CCCCTCTACATATA--CG-GCGT--CCCGT------TAATAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCGAAATTTGAAATATTTCCCATG-ATCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TATTCACTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAC-TTTGAGGTGATATGCTAGATTGACTAGACTAtatcgcacagttgaattaccccctctacatatacggcgtcccgttaataacacaaactatcgacggttttctaaaatatttaagtcgaaatttgaaatatttcccatgatccgattttgtccgattttttgtatgttgttaatcacgcttttattcactcaattccgtcaagtttgtttctgttgcaattactttgaggtgatatgctagattgactagacta
gi|6 : ttctaatgcaattagtaatgcaGT-TTAGTCGCATT-------T----------------C---T----TTGATCCCTT-AGAGCGTTACTCCGATTAATTTCTTACCTGAAT------ATCATCCCTTTACGGATA--CC-TCGT--GCCCT------AAACAACACAAACTATCG-ACGGGTTTC-T-AAAA------------AA----AAATATTTCCCATT-GTCCGATTTTGTCCAAATTTTTG-TATGTTGTTAATCACGCTTT--TGATCATTCTGAATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTAAGGTGATTTGCTAGATTGACTAGACTA
gi|7 : ATAGCTGGGT------TATTCCC-TATACAAACA--CG-GTGT--A-----------AACACTTCAAAATATCA-ATGGTTCAC-T-AAAATATTCAAGCCTCAATTCG-----TCTTCTTTGAATTTGATTCATTTCA--TTTTGG-TATGTAATTAATCATTCTATCGTAAT-GTTC--TATTTTGTCGAGTTTATGTTGCTATTGCg
gi|8 : ACTATCG-TCGGTTTAC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCA-----------TTGTCCAATTTTTTG-TATGTTG------------T--TAATCATTC--AAT----TCAAGTT--TGTTTCTATTGCAATTAA-TTtcaga
gi|9 : TGTGTTAATCGCATT-------T----------------T---TA-------TCACCTTAGAT--TTACTCCGATGACTTTCACAGTTGAAT------TACTCCCCTTTATGTATA--CG-GCGT--GCC-T------TAAatttgtagccaattt
blockSeqs : TT . A A A . A G . G AT ACTT A A T C AT . A T TC G A TACGGT G G A . G TTGC . C GGTCTT G TTTTAATCACTTAGAAGTTAGAAT T C G TACATG C AT A CGA G TACATAT A T A T A GAA A A T CG TG TA .
blockSeqs : . . . C CCTG T G T C AT . A T . T A CGTTC A . . . G AAAT . T . . TCTAGAGT . C C . T . . G G T . . . T A GG A . T . . . .
blockSeqs : C . T G . . GT . . . . . . . . . . . . CT . . . . TCTTTG . C G . T . . G T A . . . T A GG A . T . . . .
blockSeqs : . . CT . . . TTTA . C T . T . . C G T . . . T C GA A . T . . . .
blockSeqs : . . C G . A . . G G A . . . T A TG A . T . . . .
blockSeqs : . . . T . T . . C G T . . . . . . A . T . . . .
blockSeqs : . T . T . . G C A . . . . . . . . . . . .
blockSeqs : . . . . A . T . . . . . . .
blockSeqs : . . G . . .
blockSeqCons : NT**** *** TTTAT*******************************
originalCons : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATT-------T----------------C---TAGAAT--ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
finalCons : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGTNT----ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTTTTAT-------------------------------ATCACGT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
Alignments
lowQualScore : 11 1 1 1 1 1 111 22222 1 11 33333333 11 1 1 1 111111 111 222222 7777777777777777777777777777777777777777777 111111 1111111
lowQualScore : 88 5 1 5 5 5 1 6 3 6 444 00000 8 3 3 2 55 0 3 3 33 8 3 00000000 00 0 0 0 2 444444 444 7 0 333333 5 0 1 3333333333333333333333333333333333333333333 5 99 3 1 1 222222 55 4 666 2 2222222 4 5 5 5 3 0 777 1 4 3 0 66 66 66 4
lowQualScore : .. . . . . . . . . . ... ..... . . . . .. . . . .. . . ........ .. . . . . ...... ... . . ...... . . . ........................................... . .. . . . ...... .. . ... . ....... . . . . . . ... . . . . .. .. .. .
lowQualScore : 55 5 0 5 5 0 0 7 3 7 000 22222 8 2 2 5 22 0 2 2 88 8 2 55555555 22 0 0 0 5 000000 000 0 8 000000 7 7 4 1111111111111111111111111111111111111111111 7 11 1 0 7 888888 55 0 222 5 7777777 4 0 0 0 1 1 888 9 4 2 9 11 11 11 0
consensus : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTTTT-------------A---T-ATCAC-------------------GT-AGATGTTTACTCCGATGAATTNCATAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
Reference ( family-580 ) : NTAAATTGGATTTTAATAGNAAATGCTTGCTCATATGATGAAGGATACAAAATAACTGAGACTTTTNGCCGAAATGGCTCTCCATATTTTCTTTTT-AGCGA-C-ATTGGTTCC-CTT-CAAAAATGACCTTATNTTTTATGATTTTGTTGACAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACGTATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC-T-CGTTCCGAAG-TTTCGTC-G-GG-ATGGAATGTCGACGATGATTATGAGATGCTGGTCATTTTCTCGACCGT--NT--ATA---TTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTTTT-------------A---T-ATCAC-------------------GT-AGATGTTTACTCCGATGAATTNCACAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|1 : TAAA--GGATTTTAATAGTAAATGCTTGCTCATATGATGAAGG-TACAAA-TAACTGAGACTTTTCGCCGAAATGGCTCTCCATATTTTCTTTTTTAGCGA-CCATTGGTTCC-CTT-CAAAAATGACCTTATATTTTATGATTTTGTTGGCAATGTTGATCATTTATGACTTTTCAAATATATACATATGTATTGTGTTCATTTACA-ATCTAAAAAAGTGAAATAAATCCAGTAAAGAGTCAAAAAAAA--ATATCTTGAATCTT-CGTTCCGAAGTTTTCGTC-G-GGAATGAAATGTCGACGATGATTATGAGATGTTGGTCATTTTCTCGACCGT--CT--ATATATTTTTCAAACATCACTTTTCTAATACAATTGGTA------ATGCAAGCTGT-TTAATCGCATTCTTTTAATCACTTAGAA---T-ACCAT-------------------GT-AGATGTTTACGCCGATAAATTGCACAGTTGAAT------TACTCCCCTTTACATATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTC-T-AAAA-ATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCGATTTTTTG-TATGTTG------------T--TAATCATTC--AATTCCATCAAGTT--TGTTTCTGTTGCAATTAGTTTTGAGGTGATTTGCTA
gi|10 : taATTTTGTCCGAGTTTTTG-TATGTTGTTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCCAGATTGACTAGACTA
gi|11 : CAT-------------------GT-AGATGTTTACTCCGATGAATTGCATAGTTGCATTACATGTACCCCCTTTTACAAATA--CG-ACGT--GCCGCTACATATAATAACACAAACTATTG-AC
gi|12 : GATGCTGAGCATTTTCTCAATTGT--TTGCATA---TCTTCAAACATCGCCTTTC-AATACAATTATTAGGTCTTATGTGAGTTAT-TTCATCACATGTTT-------------
gi|13 : CGTATAATCGAGCGTCGACCGT------TAACAACACAAACTATCGAACGGTTTTC-TAAAAATATTTAAGTCT-------AAATATTGCCCAT
gi|14 : ACGCTCT--TGATCATTC--ATTTCCGTCAAGCT--TGTTT----------------TGAGGTGATTTGCTAGATTGACTATACTaaaaat
gi|15 : ACTC--ATGACCTCCATGGTTGAGT------TTCTTCTCTTTACATGCA--CG-GCGT--GTCTT------AAACACCACAA
gi|16 : TGTAGCAATTAC-TTTGAGGTTATATAATAGATTGACTCGACTA
gi|17 : tgGACCTTATATTTTATGATTTTGTTGGCAATATTGATCATTTATGA
gi|18 : TTAAGTCTAAATTTTAAATATTTCCCAT-----------TGTCCGATTTTTTG-TA
gi|19 : G-TTTGAGGTGATTTGCTAGATTGACTAGACT
gi|2 : TAAATTGGATTT-AATAGAAAATGCTTACTCATATGATGAAAGATACAAAATAACTGA-ACTTTTAGCCGAAATG-CTCTCCATATTTTCTTTTT-A-CAA-C-ATTGGTTCCACTT-CAAAAATGACCTTATTTTTTATGATTTTGTTGACAATGTTGATTATTTATGAC-TTTCAAATATATACATATGTATTGTATTCATTTACATATTC-AAAAAGTGAAAT-AATCCAG---------GAACTAGATCATGTCTT-AATC-TACGGT-CGAAG-TTTCGTC-G-GG-AT-GAATGTCGACGATGATTACGAGATGCTGGTTATTTTCTCGACCGT--CT--ATA---TTTTCAAACATCAC-TTTCTTATACAATTGGTC------ATGCAAGCTAT-TTAATCGCA-TTCT-------------AGAGT-ATCAT-------------------GT-AGATGTTTAC-GCGATGAATTGCACAGTTGAAT------TACT-CCCTTTACGTATA--CG-GCGT--CCCGT------TAACAACACAAACTATCG-ACGGTTTTCTT-AAAATATTTAAGTCTAAATTTGAAATATTTCCCATG-GTCCGATTTTGTCCG-TTTTTTGATATG-TGTTAATCACGCTTT--TAATCATT---AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTA
gi|3 : gAATGGCTCTCCATATTTTCTTTTT-AGCGAAT-AGTGGTTCC-CCTGCAAAAATGACCTTATTTTTCATGATTTTGTTGAAAATGTTGATCATTTATGACTTTTCCAATATATCCATATGTATTGTGTTCATTAACATATTT-AAAAAGTGAAATAAATCCAGTAAAGAGTCGAACAAAA--ATATCTTGAATC--------------TTTCGTCGG-GG-ATGGAATGTCGACGATGATTATGAGATACTGGTTATTGTCTCGACCGT--CT--ATA---
gi|3 : TATTTCCCATG-GTCCAATTTTGTCCGATTTTATG-TATGTTATTAATCACGCTTT--TAATCATTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTGAGGTGATTTGCTAGATTGACTAGACTAgatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttcccatggtccaattttgtccgattttatgtatgttattaatcacgcttttaatcattcaattccgtcaagtttgtttctgttgcaattagtttgaggtgatttgctagattgactagacta
gi|4 : aatggctctccatattttctttttagcgaatagtggttcccctgcaaaaatgaccttatttttcatgattttgttgaaaatgttgatcatttatgacttttccaatatatccatatgtattgtgttcattaacatatttaaaaagtgaaataaatccagtaaagagtcgaacaaaaatatcttgaatctttcgtcggggatggaatgtcgacgatgattatgagatactggttattgtctcgaccgtctatagatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA-C-ATTGGTTCT-------AATATGACTTTAT-TTTTATGATTTTGTTTACAAT--TAAATATTTATGACTTCTCAAATATATA--------TTGTGTTCATTTATGTATTT-AAAAAATGAATTAATTCCAGTAAAGAGTCAAACAAAA--ATATCCTTA------CGTTCCGAAA-TATCTTC-GAGA-ATGGAATGTTGATGATAATTATGAGATGCTGATCATTTTCTGAATTGTAAAT--ACA---TTTCCAAACATCACTTTTCTGATACACTTGGTA------ATCCAAGTTGT-TTAATTGAATTTTT-------------T---A-ATCACTTAGAAGTTAGAATGTCATGT-ACATGTTTACTCCGATGGATGTCATAGTTGAAT------TACTCCCCTTTACGTATA--CG-GCGT--GTCGT------AAACAACACAAACTATCG-ACAGTTTTC-T-
gi|5 : aaTTCTAATGCAATTAGTA------ATGCAAGCTGT-TTAATCG------------------------T-ATCGC-------------------AC-AG-T-----------TGAATTAC--------------------CCCCTCTACATATA--CG-GCGT--CCCGT------TAATAACACAAACTATCG-ACGGTTTTC-T-AAAATATTTAAGTCGAAATTTGAAATATTTCCCATG-ATCCGATTTTGTCCGATTTTTTG-TATGTTGTTAATCACGCTTT--TATTCACTC--AATTCCGTCAAGTT--TGTTTCTGTTGCAATTAC-TTTGAGGTGATATGCTAGATTGACTAGACTA
gi|6 : GT-TTAGTCGCATTTCT-------------T---TGATCCC-------------------TT-AGAGCGTTACTCCGATTAATTTCTTACCTGAAT------ATCATCCCTTTACGGATA--CC-TCGT--GCCCT------AAACAACACAAACTATCG-ACGGGTTTC-T-AAAA------------AA----AAATATTTCCCATT-GTCCGATTTTGTCCAAATTTTTG-TATGTTGTTAATCACGCTTT--TGATCATTCTGAATTCCGTCAAGTT--TGTTTCTGTTGCAATTAG-TTTAAGGTGATTTGCTAGATTGACTAGACTA
gi|7 : ATAGCTGGGT------TATTCCC-TATACAAACA--CG-GTGT--A-----------AACACTTCAAAATATCA-ATGGTTCAC-T-AAAATATTCAAGCCTCAATTCG-----TCTTCTTTGAATTTGATTCATTTCA--TTTTGG-TATGTAATTAATCATTCTATCGTAAT-GTTC--TATTTTGTCGAGTTTATGTTGCTATTGCg
gi|8 : ACTATCG-TCGGTTTAC-T-AAAATATTTAAGTCTAAATTTGAAATATTTCCCA-----------TTGTCCAATTTTTTG-TATGTTG------------T--TAATCATTC--AAT----TCAAGTT--TGTTTCTATTGCAATTAA-TTtcaga
gi|9 : TGTGTTAATCGCATTTTT-------------A---T---CAC-------------------CTTAGAT--TTACTCCGATGACTTTCACAGTTGAAT------TACTCCCCTTTATGTATA--CG-GCGT--GCC-T------TAAatttgtagccaattt