lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333 11111 777777777777777777777777777777777777777 1 1 3333333333333333333333333333333333 111 7777777777777777777777777777777777777777777777777777777 11 4444 1111 11 1 11111 22222222 11 2222222 6666666666666666666666666666666666666666666666666666666666666666666 222222 33333333 22222222 11 11 2222 1 1 11 5555 11 888888888888888888888888888888888888888888 44444 2 5555555 1 1 2 2 22 2 2 5555555555 22
lowQualScore : 88 55 55555555555555 11111 4 3 6 3 44 44 44 99 777 55 2 222222222222222222222222222222222222222 5 0 5 4 4 6 1 3 1 2 3333333333333333333333333333333333 6 99 6 111 9999999999999999999999999999999999999999999999999999999 00 1111 66 5 5 5 5 5 5 5 5 5 5 5 0000 33 5 1 5 11111 1 4 8 8 99999999 4 00 9999 0 8 0 8 6666666 0 6666666666666666666666666666666666666666666666666666666666666666666 8 333333 8 22222222 8 8 0 8 66666666 8 88 33 33 2 3 8888 3 3 88 7 8 7777 66 555555555555555555555555555555555555555555 6 55555 0 6 4 4 6 2 2222222 5 5 6 0 0 77 4 0 6 0 2 2222222222 6 77 4
lowQualScore : .. .. .............. ..... . . . . .. .. .. .. ... .. . ....................................... . . . . . . . . . . .................................. . .. . ... ....................................................... .. .... .. . . . . . . . . . . . .... .. . . . ..... . . . . ........ . .. .... . . . . ....... . ................................................................... . ...... . ........ . . . . ........ . .. .. .. . . .... . . .. . . .... .. .......................................... . ..... . . . . . . ....... . . . . . .. . . . . . .......... . .. .
lowQualScore : 88 22 55555555555555 11111 0 3 0 3 66 66 66 33 000 55 2 000000000000000000000000000000000000000 7 1 1 9 9 7 7 2 0 5 3333333333333333333333333333333333 7 22 7 777 9999999999999999999999999999999999999999999999999999999 00 3333 99 0 0 0 0 0 0 0 0 0 0 0 6666 88 0 4 7 11111 7 4 0 0 55555555 0 00 4444 1 0 8 0 0000000 8 4444444444444444444444444444444444444444444444444444444444444444444 0 000000 0 66666666 0 0 8 0 00000000 0 88 88 88 5 2 3333 3 3 33 3 3 7777 33 333333333333333333333333333333333333333333 7 00000 0 0 0 0 0 5 5555555 5 5 0 0 0 55 0 0 0 0 5 5555555555 0 55 0
consensus : NTTTTA-TCGTTATTTTTTTTTA--TA--------NTTT-----TATTAGT-TATTTTGAC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACAATATCG---AT--AACAGACATAAC--TAC--GTA--------------------A--A-G--CAAAATATTATACATCATGTGCATTTGGCAATATATGG-TAGATATGATTTATGAAGT-----------AAT----AAA------CGA----CATTG-TGAA--AT-AT---AATG-------------ATTAAA-GTCATATA-------------ATTTA-C-A-----ATTGCTTGAN-ATACTNA--AGCA--TTTCGGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAA-----TTTTAA-G-TGTGA-TTT--A----AGG-TTTTGA-CAAA----TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGT----AA-NATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC----TAGTGTTTTCCA-AATTTTTC-A--TAAC-AT-TTAG-TAC-------------ATTCGAAAATTTAANCTTAGAAGTTTTCGNTNTTATNCAATTCACANAATTGGAACATTTGGGGGTACGCATGATTTCCAAATTTGCTTNGAGATTAAATTACAAACAGAGNAAACTTNTATNC-AGAAGTTTGCAAAATTAAANTC
Reference ( gi|2 ) : GTTTTA-TTATTATTTTTTTTT---TA--------TTTT-----TATTAGT-TATTTTGAC-CTATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACAATATCA---AT--AACAAACATAAC--TAT--ATA--------------------A--A-G--CAAAATATCATACATCATGTGCATTTGGCAATATATGG-TAAATATGATTTATGAAGT-----------AAT----AAA------CGC----CATTG-TGAA--AT-AT---AATG-------------ATTAAA-GTCATATA-------------ATTTA-C-A-----ATTGCTTGAC-ATACTTG-TAGCA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAA-----TTTCAA-G-TGTGA-TT---A----AGG-TTTTGG-CAAA----TCGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGT----AT-GATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTTAAATAGATTCTT--TAATGTTTTCCATAATTTTTC-A--TAAC-AT-TTA--TAC-------------ATTCGAAAAT----GCTTAG-AGCTTTCGATTTTGTCTAA-----ATAATTGGAACATTTGGGAG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTGC-AACAGAGCAAA---GTATTCAAAAAGTTT--AAAATTAAATTCCAGTACATTT
gi|4 : TTTTA-CCAT-ATTTTTTTTAA--TA--------ATTT-----TATTAGT-TATTT---C-CCATT--ACAATAATT--CGAT--ATAGTCCCGGGTCAGACAATATCG---AT--AACAGACATAA------------------------------------G--CAAAATATTATACATCATG-GCA-----CAATATATGG-TA------------GAAGT-----------AAT----AAA------CGA----CATTG-TGAA---T-AT---AATG-------------ATTAA--GTCATA-A-------------ATTTG-C-A-----ATTGCTTGAC-ATACTAA--AGCA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-ATT----GAGAT--TTT-GCTTTTCTTAAT--A-CAGAACATGTAA-------TTCAA-G-TGTGA-TT---A----AGGTTTTTGA-CAAA----TTGAGATTTCTGACT-CTTGCCAACG-------AATCTATTCTAC-GAA-----------CATTTTATATTTGTAGT---T-----T--------------C--------------TGCCA------TGCAAACAT----AA-GATA-ATAAAATT-ATT---C----AAAAGGTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TGTTGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC----TAGTGTTTTCCA-AATCATTG-A---AAC-ATATTAG-TAC-------------ATTCGAA
gi|1 : atttgagcatTTTTAATTATTATTATT--------A--------TTTT-----TATTAGT-T-TTTTGACGCCATT-T-CAA--ATTTTCGAT--AT-GTC---GGTCAGACAG-ATTA---ATCGAACAAA-ATAAA--GAC--GTG--------------------ATAA-GTTCAAAATAT-ATACATC---------TGG-AATATATGG-TAGA---GATTCAT-----------------------AAA------CGA----CATTGATGAA--AT-TTTAAAATG-------------ATTAAAAGTCATATA-------------ATTTTTC-A-----ATTGCTTGAC-ATACAAA--AGC---TTTCAGAATAATTT-AAT-TA-AA-AAAAG-G-AGTGTT-GTTAGTATTAGAGATAGGTT-GCTTTTCTTAATAAA-CAGAACATGTAAATTTTTTTTCAA-GTTGTGA-TTTCAA----AGG-TTTTGA-CAAAGGGTTGGAG---TTTGACTACTTG-CAACGAAATAATAATTTGCACTTCAGAA-----------CA--------------T---TTATAAT--------------T--------------TG-TAGATATCTGC-AGGGTGCTAATAGATA-AT-AAATTAATTAAGCAATAAAAG-GTACTACTTATGTTGTCTAATTTTAGTTAAGTAGAA--CCACAACTAATTTTG-TGCTTCCATTGAAATTTCGAAAAG-TTTAAATAGATTCATAGTAG-GTTTTCCA-AATTTATC-AAGTAACAAT-TTAGGTGCAATATAAGAAAAAATT--AAAAT----GCTTAGAAGTTTTCGTTATTATATAATTCACAAAATTGG-AC-TTTGGGGGTACGCATGATTTCCAAATTTGCTTTAAGATTAAATTACAAACAGAAGAAACTTATATAC-AGAAGTTTGCAAAATTAAATTC
gi|10 : tttttttttctttttttTTTT--TTGTTTTTTTTTTTTAGATA--------TCTT-----TATTAGC-TATTTTAAC-TCATTCTACAA--A-T--AGGT--ATACTCCGGGGTCAAAGAATATCG---AT--AACAGACATGAC---AC--TTG--------------------A--T-G--TAAAATATTAT-CGTCTTGTGCATTTGGgcaatttgtttttcaaggataatgtaataactattttt
gi|19 : TTTA-TTTTTTTTTTTTTTTAAATA--------ATTT-----TATTAGT-TATTTTGAC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACAATATCG---AT--AACAGACATAA
gi|16 : ttaTTA-TCATCATTTCTTCTT---T----------TTTAATAATATTTCT-TAATTTGAC-CCATT-TACAA--ATT--CGAT--GCAGCCC-AGGTCAGATAATATTA---AT------ATCATTGCTTTATTGATA--------------------A--A-A--CAAAATATagaaa
gi|6 : TTTTTT---TAAAGAATATTTTT-----TATTACT-CATTTTGAC-CCATT-TACAA--ATT--CGAT--ATAGTCT-GGGTCAAACAATATCG---AT--AACAGACGTAAC--TAT--GTACATATGTCCGGGACATATGTA--ATA--CAAAATATTTTGCATCATGTGCATTTAGCTATATATGG-TAGATATGGTATATGAAGC-----------AAT----AAA------CACACGACATTG-TGAA--AT-AT---AATT-------------ATT----------TA-------------A-------A-----ATTGCTTGAG-ATACTTA-AAGCA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGC----GAGAT--GTT-G
gi|3 : c---TA--------ATTT-----TATTAGT-TATTTTGAC-CCATT-TACAA--CTT--CGAT--
gi|5 : gaagtaataaatgacattgtgaaatataatgattaagtcaatatatttacaatgcttgacataattaaagcatttcagataatttattaaaaagatgtgtttgtagtgagatatttgcttttcttaataacagaacatgtaaatttcaagtgtgatttaaggttttgacaaattgagatttctgactcttgcaacgaatctattctacagaaatttttatattcgtagattctgcatgcaacataatatatataaattattcaaaagtaccacgttgttgttatcttcatagtagaaacccacaactatgtgcttccattgaatttcaaagtttaaaatagattctactgttttccaattttttctattaacatttatacattcgaaaatttaatcttagagttttcgattttatccaaacaattggaacatttgggggatgcatgtttccatttgcttagagataaattacaacagagcaaattattcagaagtttaaaattaaa---TA--------TTTC-----AATTAGCATATCTTAAC-CCATT-TACAT--GTT--CGATTAACAATC--GGATCAGACAATATCG---AT--AACAtttt
gi|15 : ttcgaaaggtgtttaggtgtcgttcctgactgattcatttgaTTT-----TATTAGT-TATTTTGAT-CCATC-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacgatatacaaatcaagatcactttcgaataatctaaataaataagattgtgtgtgaagcgacatgttgctgttctcaattaaaagaacatgtacattttggatgtgactgtaagaggttttgagaaatcgagatttctgat
gi|8 : attaaacaattttgatggttttggtttgaatggaaaataaactttttcttaaaaaaacaaTTAGC-TATTTTGAC-CCATT-TTCAA--ATT--CGAT--ATGGTTT-GG-TCAGACAATGTCGCGGAT--AACAGACATAAC--TAA--GTA--------------------A--C-G--CAAAATAT---ACATCATGTGCATTTGGCAGTATACACCTAGATATGGTTTATGAAGT-----------AATAAACAAA------CGA----CATTG-TGAA--AT-AT---
gi|18 : tatactgtatGAC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACAATATCA---AT--AACtgcttgagata
gi|17 : ttcaaaaagtattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACAATATCA---AT--AACAGACATAAC--TAT--ATA--------------------A--A-G--CAAAATATTATACATCATGTGCATTTGGCAATATATGG-TTGATATGA
gi|7 : -G--CAAAATATTATACAT---------TTGGCAATACATCC-TAGATATGATTTATTTAGTGTCATACACACAAT----AAAATTGAACGA----CATTG-TGAACTATTAT---AATTCATAAAACATCCCATTAAA-GT-ATATACGCTGAAAGCAGAAACTA-T-ACCCCCATTGCTTGAG-ATACTAA--AGCA--ATTCCGA-TCATTT-A-T-TACAA-AATAT-G-TGT-TT-GT-AGC----GATAT--GTT-GCTTTTCTTAAT-AA-CAGAGCATGTGAA-----TTTTAA-G-TGCGATTT---A----AAG-TTTTGA-TAAA----TCAAGATTTCAGA
gi|3 : GAAGT-----------AAT----AAA------TGA----CATTG-TGAA--AT-AT---AATG-------------ATTAA--GTCA-ATAT------------ATTTA-C-A-----AT-GCTTGAC-ATAATTA-AAGCA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGT----GAGAT--ATTTGCTTTTCTTAAT-AA-CAGAACATGTAAA-----TTTCAA-G-TGTGA-TTT--A----AGG-TTTTGA-CAAA----TTGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAAATTTTTATATTCG--------------TAGAT-----T--------------C--------------TG-CA------TGC-AACAT----AA-TATATAT-AAATT-ATT---C----AAAA-GTACCACGT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC----TACTGTTTTCCA-ATTTTTTCTAT-TAAC-AT-TTA--TAC-------------ATTCGAAAATTTAATCTTAG-AGTTTTCGATTTTATCCAA-----ACAATTGGAACATTTGGGGG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---TTATTC-AGAAGTTT--AAAATTAAAATC
gi|12 : ATATA----------------TA-CCA-----ATTGCTAGAG-ATACTTA-CAGCA--TTTCAGA-TAATTT-A-T-TA-AA-CAGAT-A-TGT-TT-GT-AGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAA-----TTTTAA-G-TGTGATTT---A----AGG-TTTTGA-CAgaagttgtaaatgggtcaaaataactaataaaattatttt
gi|9 : -----ATTGCTTGAAGATACTAAACGGCAATTTCCGGA-TCATTTTA-T-TA-CA-GAAAT-GGTGT-TTTGT-AGC----GATATTGGTT-GCTTTTCTTAAT-AAGCAG-ACATGTGAA-----TTTTAA-GTTGCGA-TTTA-A----AAG-TTTTGATTAAA----TTAAGATTTCAGA
gi|5 : --TTTCGAA-TAATCT-A-AATA-AATAAGATTG-TGT-GT-GA-AGC----GACAT--GTT-GCTGTTCTCAATTAA-AAGAACATGTACA-----TTTTGG-A-TGTGA-CT---GTAAGAGG-TTTTGA-GAAA----TCGAGATTTCTGA
gi|11 : ttcgaaaggtgtttaggtgtcgttcctgactgattcatttgatatttcaattagcatatcttaacccatttacatgttcgattaacaatcggatcagacaatatcgataacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacgatatacaaatcaagatcacAAA-----TTTTAAAG-TGTGA-TTT--A----AGG-TTTTGA-CAAA----TCGAGATTTCCGAt
gi|14 : ataatatttatacagaaagcagaaactatatatccattgccttgagataggcctacttacagcaatttcaaaatactgtaattaa-----TTTAAA-G-TGTGA-TTT--A----AGG-TTTTGA-CAAA----TCGAGATTTCCGACT-C---------------------ATTCTACAAAA-----------CA--------------T---T-----TTATACTTGTAAATCC--------------TG-CA------TGC-AACGT----AT--ATG-AG-A-----------------------ACCACT----TTGTT--ATCTTCGT--AGTA-AAACC
gi|13 : -TGTGA-TTT--A----AGG-TTTTGA-CAAA----ATGAGATTGCTGACT-CTTG-CAACG-------AATCTATTCTGCAGAA-----------CA--------------T---T-----T--------------TATATTTGTTGATTATG-CA------TGC-AACAT----AA-CATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333 44444444444444444444444444444444 22222222222 1111 11111111111 111 44444444444444444444444444444444444444444444 11111 111 11 11 1 11111 2222222 22222222222222222222222222222222222222222222222222222222222222 111111 2222222 111 1111 11 11 2222 1 1 11 22 11 1 22222 111 22 22222 3333333 2 55555 2 2 33 2 2 3333 1 33
lowQualScore : 3 6 33 66 0000000000000000000 3 1 3 3 3 3 44 44 44 77 3 44 666 55 99999999999999999999999999999999 66 3 3 3 5 5 55 77777777777 2222 99999999999 5 77 5 000 55555555555555555555555555555555555555555555 777 22222 55 4 222 1 8 66 66 00 3 4 4 4 4 4 4 4 4 4 4 4 9999 22 4 5 0 00000 4 3 3 1 3 88 55 3 3 777 5 6 6 1111111 99999999999999999999999999999999999999999999999999999999999999 6 999999 6 3333333 6 6 6 111 4444 6 6 11 11 0 1111 0 0 33 3 33 0 33 0 88888 111 55 55555 2222222 3 1 1 11 11111 1 7 7 3 0 3 00 1 3 3 1 8888 1 3 00 1
lowQualScore : . . .. .. ................... . . . . . . .. .. .. .. . .. ... .. ................................ .. . . . . . .. ........... .... ........... . .. . ... ............................................ ... ..... .. . ... . . .. .. .. . . . . . . . . . . . . .... .. . . . ..... . . . . . .. .. . . ... . . . ....... .............................................................. . ...... . ....... . . . ... .... . . .. .. . .... . . .. . .. . .. . ..... ... .. ..... ....... . . . .. ..... . . . . . . .. . . . . .... . . .. .
lowQualScore : 5 3 88 11 5555555555555555555 6 0 6 6 1 1 22 22 22 77 3 66 444 55 11111111111111111111111111111111 11 4 1 1 7 0 99 11111111111 1111 66666666666 7 99 7 000 33333333333333333333333333333333333333333333 333 55555 44 4 222 0 9 11 11 66 4 4 4 4 4 4 4 4 4 4 4 4 4444 22 4 0 0 00000 0 6 6 3 6 66 00 6 6 000 5 7 7 7777777 33333333333333333333333333333333333333333333333333333333333333 7 222222 7 5555555 7 7 7 777 2222 7 7 00 00 8 2222 0 0 88 2 88 2 88 0 00000 000 00 00000 3333333 7 0 0 77 00000 0 3 3 7 7 7 77 0 7 7 0 3333 0 3 00 0
consensus : NTTTTATCGTTNTTTTTT--T--------TT--A------T-ANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------A--A-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--AT-AT---AATG-------------ATTAAA-GTCA-TATA-------------ATTTA-C-A-----ATTGCTTGAN-ATA-C---TAA-A--G--CA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-T-GTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACGAA-------TCTATTCTACAGAA-----------CA--------------T---TT--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATTA-TT---CAA----AA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTGAA-TTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--TAACA-T-TTAG-TACATTC-----GAAAATT-AAN--CTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
Reference ( family-5680 ) : NTTTTATCGTTATTTTTT--T--------TT--A------T-ANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------A--A-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--AT-AT---AATG-------------ATTAAA-GTCA-TATA-------------ATTTA-C-A-----ATTGCTTGAN-ATA-C---TNA-A--G--CA--TTTCGGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-T-GTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACGAA-------TCTATTCTACAGAA-----------CA--------------T---TT--------------C--------------TG-CA------TGC-AACGTA-----ANATA-AT-AAATTA-TT---CAA----AA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTGAA-TTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--TAACA-T-TTAG-TACATTC-----GAAAATTTAAN--CTTAGAAGTTTTCGNTNTTATNCAATTCACANAATTGGAACATTTGGGGGTACGCATGATTTCCAAATTTGCTTNGAGATTAAATTACAAACAGAGNAAACTTNTATNC-AGAAGTTTGCAAAATTAAANTC
gi|1 : TTTTTTCTTTTTTTTTT--TAATTATTATT--A------TTATTTTT-ATTAGT-T-TTTTGACGCCATT-T-CAA--ATTTTCGAT--AT-GTC---GGTCAGACAGATTAATC---GA--ACA--AA-ATAAAGACGTG--------------------ATAA-GTTCAAAATAT-ATACATC---------TGG-AATATATG-GTAGA---GATTCAT-----------------------AA----A------CGACATTGATGAA--AT-TTTAAAATG-------------ATTAAAAGTCA-TATA-------------ATTTTTC-A-----ATTGCTTGAC-ATA-C---AAA-A--G--C---TTTCAGAATAATTT-AAT-TA-AA-AAAAG-G-AGTGTT-GTTAGTATTAGAGATAGGTT-GCTTTTCTTAAT-AAACAGAACATGTAAATTTTTTTTCAA-G-TTGTGATT-TCAAAG--G-TTTTGA-CAAAGGGTTGGAGTTT--GACTACTTG-CAACGAAATAATAATTTGCACTTCAGAA-----------CA--------------T---TTATAAT---------T--------------TG-TAGATATCTGC-AGGGTGCTAATAGATA-AT-AAATTAATTAAGCAATAAAAG-GTACTACTTATGTTGTCTAATTTTAGTTAAGTAGAA--CCACAACTAATTTTG-TGCTTCCATTGAAATTTCGAAAAGTTTAAA-TAGATTCA-TAGTAGGTTTTCCA-AATTTATC-AAGTAACAAT-TTAGGTGCAATATAAGAAAAAATTAAAATGCTTAGAAGTTTTCGTTATTATATAATTCACAAAATTGGA-C-TTTGGGGGTACGCATGATTTCCAAATTTGCTTTAAGATTAAATTACAAACAGAAGAAACTTATATAC-AGAAGTTTGCAAAATTAAATTC
gi|10 : tttTTTT-TTGTTTTTTTTT--T--------TTAGA------T-ATCTTT-ATTAGC-TATTTTAAC-TCATTCTACAA--A-T--AGGT--ATACTCCGGGGTCAAAGA-AT--ATC---GATAACA--GACATGAC-ACTTG--------------------A--T-G--TAAAATATTAT-CGTCTTGTGCATTTGGgcaatttgtttttcaaggataatgtaataactattttt
gi|11 : AAATTTT-----AAAG-T-GTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGA
gi|12 : ataatatttatacagaaagcagaaactatatatccattgccttgagataggcctacttacagcaatttcaaaatactgtaattaaA-TATA----------------TA-CCA-----ATTGCTAGAG-ATA-C---TTACA--G--CA--TTTCAGA-TAATTT-A-T-TA-AA-CAGAT-A-TGT-TT-GT-AGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-T-GTGATT-T--AAG--G-TTTTGA-CA
gi|13 : -T-GTGATT-T--AAG--G-TTTTGA-CAAA---ATGAGATTGCTGACT-CTTG-CAACGAA-------TCTATTCTGCAGAA-----------CA--------------T---TT--------------TATATTTGTTGATTATG-CA------TGC-AACATA-----ACATA-AT-AAATTA-TT---CAA----AA-GTACCACTT-TGTT
gi|14 : TTTA-----AA-G-T-GTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-C---------------------ATTCTACAAAA-----------CA--------------T---TTTATACTTGTAAATCC--------------TG-CA------TGC-AACGTA------------------TA-T-----------GA-GAACCACT----TTGTT--ATCTTCGT--AGTA-AAACC
gi|15 : ACTTTTT--C--------TT--AAAAAAAC-AATTTT-ATTAGT-TATTTTGAT-CCATC-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACA-AT--
gi|16 : attaaacaattttgatggttttggtttgaatggaaaataaTTATCATCATTTCTTCTT--------TT--T------T-AATAAT-ATTTCT-TAATTTGAC-CCATT-TACAA--ATT--CGAT--GCAGCCC-AGGTCAGATA-AT--ATT---AATATCATTG-CTTTATTG-ATA--------------------A--A-A--CAAAATAT
gi|17 : AC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAACA--GACATAACTATATA--------------------A--A-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTTGATATGA
gi|18 : GAC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAAC
gi|19 : ttcaaaaagtattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATTTTTTTTTTTT--T--------TTAAA------T-AATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAA
gi|2 : ttaTTTTATTATTATTTTTT--T--------TT---------T-ATTTTT-ATTAGT-TATTTTGAC-CTATT-TACAA--ATT--CGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAACA--AACATAACTATATA--------------------A--A-G--CAAAATATCATACATCATGTGCATTTGGCAATATATG-GTAAATATGATTTATGAAGT-----------AAT----AA----A------CGCCATTG-TGAA--AT-AT---AATG-------------ATTAAA-GTCA-TATA-------------ATTTA-C-A-----ATTGCTTGAC-ATA-C---TTGTA--G--CA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-T-GTGA-T-T--AAG--G-TTTTGG-CAAA---TCGAGATTTCTGACT-CTTG-CAACGAA-------TCTATTCTACAGAA-----------CA--------------T---TT--------------C--------------TG-CA------TGC-AACGTA-----TGATA-AT-AAATTA-TT---CAA----AA-GTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTGAA-TTTC--AAAGTTTTAAATAGATTCTTTAAT--GTTTTCCATAATTTTTC-A--TAACA-T-TTA--TACATTC-----GAAAAT----G--CTTAG-AGCTTTCGATTTTGTCTAA-----ATAATTGGAACATTTGGGAG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTGC-AACAGAGCAAA---GTATTCAAAAAGTTT--AAAATTAAATTCagaaa
gi|3 : gGAAGT-----------AAT----AA----A------TGACATTG-TGAA--AT-AT---AATG-------------ATTAA--GTCAATATA--------------TTTA-C-A-----AT-GCTTGAC-ATAAT---TAA-A--G--CA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGT----GAGAT--ATTTGCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-T-GTGATT-T--AAG--G-TTTTGA-CAAA---TTGAGATTTCTGACT-CTTG-CAACGAA-------TCTATTCTACAGAAATTTTTATATTCG--------------TAGATT--------------C--------------TG-CA------TGC-AACATA-----ATATATAT-AAATTA-TT---CAA----AA-GTACCACGT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTGAA-TTTC--AAAGTTTAAAATAGATTC--TACT--GTTTTCCA-ATTTTTTCTAT-TAACA-T-TTA--TACATTC-----GAAAATTTAAT--CTTAG-AGTTTTCGATTTTATCCAA-----ACAATTGGAACATTTGGGGG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---TTATTC-AGAAGTTT--AAAATTAAAATCcagtacattt
gi|3 : --A------T-AATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--CTT--CGAT--gaagttgtaaatgggtcaaaataactaataaaattatttt
gi|4 : gaagtaataaatgacattgtgaaatataatgattaagtcaatatatttacaatgcttgacataattaaagcatttcagataatttattaaaaagatgtgtttgtagtgagatatttgcttttcttaataacagaacatgtaaatttcaagtgtgatttaaggttttgacaaattgagatttctgactcttgcaacgaatctattctacagaaatttttatattcgtagattctgcatgcaacataatatatataaattattcaaaagtaccacgttgttgttatcttcatagtagaaacccacaactatgtgcttccattgaatttcaaagtttaaaatagattctactgttttccaattttttctattaacatttatacattcgaaaatttaatcttagagttttcgattttatccaaacaattggaacatttgggggatgcatgtttccatttgcttagagataaattacaacagagcaaattattcagaagtttaaaattaaaTTTTACCAT-ATTTTTT--T--------TA--A------T-AATTTT-ATTAGT-TATTT---C-CCATT--ACAATAATT--CGAT--ATAGTCCCGGGTCAGACA-AT--ATC---GATAACA--GACATAA--------------------------------G--CAAAATATTATACATCATG-GCA-----CAATATATG-GTAGA------------AGT-----------AAT----AA----A------CGACATTG-TGAA---T-AT---AATG-------------ATTAA--GTCA-TA-A-------------ATTTG-C-A-----ATTGCTTGAC-ATA-C---TAA-A--G--CA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-ATT----GAGAT--TTT-GCTTTTCTTAAT--A-CAGAACATGTAA--TTC-----AA-G-T-GTGA-T-T--AAG--GTTTTTGA-CAAA---TTGAGATTTCTGACT-CTTGCCAACGAA-------TCTATTCTAC-GAA-----------CATTTTATATTTGTAGT---TT--------------C--------------TGCCA------TGCAAACATA-----AGATA-ATAAAATTA-TT---CAA----AAGGTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TGTTGCTTCCATTGAA-TTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATCATTG-A---AACA-TATTAG-TACATTC-----GAAttt
gi|5 : atttgagcatT--T--------TG--A------T-ATTTCA-ATTAGCATATCTTAAC-CCATT-TACAT--GTT--CGATTAACAATC--GGATCAGACA-AT--ATC---GATAACA--
gi|5 : ttcgaaaggtgtttaggtgtcgttcctgactgattcaGAT-ATA-CAAATCA-A--GATCAC-TTTCGAA-TAATCT-A-AATA-AATAAGATTG-TGT-GT-GA-AGC----GACAT--GTT-GCTGTTCTCAATTAA-AAGAACATGTACATTTT-----GG-A-T-GTGACTGT--AAGAGG-TTTTGA-GAAA---TCGAGATTTCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacgatatacaaatcaagatcactttcgaataatctaaataaataagattgtgtgtgaagcgacatgttgctgttctcaattaaaagaacatgtacattttggatgtgactgtaagaggttttgagaaatcgagatttctgat
gi|6 : ttcgaaaggtgtttaggtgtcgttcctgactgattcatttgatatttcaattagcatatcttaacccatttacatgttcgattaacaatcggatcagacaatatcgataacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacTTTT--T--------TT--AAAGAA-T-ATTTTTTATTACT-CATTTTGAC-CCATT-TACAA--ATT--CGAT--ATAGTCT-GGGTCAAACA-AT--ATC---GATAACA--GACGTAACTATGTACATATGTCCGGGACATATGTA--ATA--CAAAATATTTTGCATCATGTGCATTTAGCTATATATG-GTAGATATGGTATATGAAGC-----------AAT----AAACACA------CGACATTG-TGAA--AT-AT---AAT---------------T---------------------------ATTTA-A-A-----ATTGCTTGAG-ATA-CT--TAA-A--G--CA--TTTCAGA-TAATTT-A-T-TA-AA-AAGAT-G-TGT-TT-GT-AGC----GAGAT--GTT-Gt
gi|7 : c-G--CAAAATATTATACAT---------TTGGCAATACATC-CTAGATATGATTTATTTAGTGTCATACACACAAT----AA----AATTGAACGACATTG-TGAACTATTAT---AATTCATAAAACATCCCATTAAA-GT-A-TATACGCTGAAAGCAGAAACTA-T-ACCCCCATTGCTTGAG-ATA-C---TAA-A--G--CA--ATTCCGA-TCATTT-A-T-TACAA-AATAT-G-TGT-TT-GT-AGC----GATAT--GTT-GCTTTTCTTAAT-AA-CAGAGCATGTGAATTTT-----AA-G-T-GCGATT-T--AAA--G-TTTTGA-TAAA---TCAAGATTTCAGA
gi|8 : T--A------T-ACTGTA-TTTAGC-TATTTTGAC-CCATT-TTCAA--ATT--CGAT--ATGGTTT--GGTCAGACA-AT--GTCGCGGATAACA--GACATAACTAAGTA--------------------A--C-G--CAAAA---TATACATCATGTGCATTTGGCAGTATACACCTAGATATGGTTTATGAAGT-----------AATAAACAA----A------CGACATTG-TGAA--AT-AT---
gi|9 : -----ATTGCTTGAAGATA-C---TAA-ACGG--CAATTTCCGGA-TCATTTTA-T-TA-CA-GAAAT-GGTGT-TTTGT-AGC----GATATTGGTT-GCTTTTCTTAAT-AAGCAG-ACATGTGAATTTT-----AA-GTT-GCGATT-TA-AAA--G-TTTTGATTAAA---TTAAGATTTCAGAtgcttgagata
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 4444444444 555555555555555555555555555 22222222222 1111 11111111111 111111 555555555555555555555555555555555555555555555 11111 111 11 11 1 11111 2222222 2222222222222222222222222222222222222222222222222222222222222222222 111111 2222222 22222222 11 11 2222 1 1 11 22 11 1 222222 1 1 22 22222 44444444 1 33333 1 1 11 1 1 2222 1 11
lowQualScore : 3 0 1 777 1111111111 1 3 3 3 3 44 44 44 77 3 44 666 55 000000000000000000000000000 44 66 3 3 3 5 5 4444 77777777777 2222 99999999999 5 555555 5 111111111111111111111111111111111111111111111 5 22222 55 4 666 4 66 66 00 4 8 4 4 4 4 4 4 4 4 9999 22 4 0 5 00000 4 7 1 3 88 55 3 3 777 5 6 6 1111111 9999999999999999999999999999999999999999999999999999999999999999999 6 999999 6 2222222 6 6 6 00000000 6 6 11 11 0 1111 0 0 33 9 33 0 33 0 888888 0 0 55 55555 33333333 3 33333 1 7 7 3 0 3 88 3 3 4444 3 88
lowQualScore : . . . ... .......... . . . . . .. .. .. .. . .. ... .. ........................... .. .. . . . . . .... ........... .... ........... . ...... . ............................................. . ..... .. . ... . .. .. .. . . . . . . . . . . .... .. . . . ..... . . . . .. .. . . ... . . . ....... ................................................................... . ...... . ....... . . . ........ . . .. .. . .... . . .. . .. . .. . ...... . . .. ..... ........ . ..... . . . . . . .. . . .... . ..
lowQualScore : 5 5 0 888 3333333333 0 6 6 1 1 22 22 22 77 3 66 444 55 444444444444444444444444444 77 11 4 1 1 7 0 5555 11111111111 1111 66666666666 7 999999 7 000000000000000000000000000000000000000000000 7 55555 44 4 777 4 11 11 66 4 9 4 4 4 4 4 4 4 4 4444 22 4 0 0 00000 0 3 3 6 66 00 6 6 000 5 7 7 7777777 3333333333333333333333333333333333333333333333333333333333333333333 7 222222 7 7777777 7 7 7 00000000 7 7 00 00 8 2222 0 0 88 8 88 2 88 0 000000 0 0 00 00000 00000000 3 33333 0 3 3 3 7 3 33 3 3 3333 3 33
consensus : NTTTTATCGTTTTTTTTTT---TT--A-------TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAN-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
Reference ( family-5680 ) : NTTTTATCGTTNTTTTTTT---TT--A-------TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAN-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---NCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
gi|1 : TTTTTTC-TTTTTTTTTTTAATT--ATTATTATTATTTTT-ATTAGT-T-TTTTGACGCCATT-T-CAA--ATTTTCGAT--AT-GTC---GGTCAGACAGATTAATC---G--AACA--AA-ATAAAGACGTGAT------------------AA-GTTCAAAATA-TATACATC---------TGG-AATATATG-GTAGA---GATTC-------------------AT----AA----A------CGACATTGATGAA--ATTTT-AAAATG-------------ATTAAAAGTCA-TATA-------------ATTTTTC-A-----ATTGCTTGAC-ATA-C---A-AAA--G--C---TTTCAGAATAATTTAAT-TA-AA-AAAAG-G-AGTGTT-GTTAGTATTAGAGATAGGTT-GCTTTTCTTAATAAA-CAGAACATGTAAATTTTTTTTCAA-GTTGTGATT-TCAAAG--G-TTTTGA-CAAAGGGTTGGAGTTT--GACTACTTG-CAACGAAATAATAATTTGCACTTCAGAA-----------CA--------------T---TTATAAT--------------T--------------TG-TAGATATCTGC-AGGGTGCTAATAGATA-AT-AAATTAATTAAGCAATAAAAG-GTACTACTTATGTTGTCTAATTTTAGTTAAGTAGAA--CCACAACTAATTTTG-TGCTTCCATTGAAATTTCGAAAAGTTT-AAATAGATTCA-TAGTAGGTTTTCCA-AATTTATC-AAGT-AACAAT-TTAGGTGCAATATAAGAAAAAATT-AAAATGCTTAGAAGTTTTCGTTATTATATAATTCACAAAATTGG-AC-TTTGGGGGTACGCATGATTTCCAAATTTGCTTTAAGATTAAATTACAAACAGAAGAAACTTATATAC-AGAAGTTTGCAAAATTAAATTC
gi|10 : tttTTTT-TTGTTTTTTTTTT---TTAGA-------TATCTTT-ATTAGC-TATTTTAAC-TCATTCTACAA--A---TAGGT--ATACTCCGGGGTCAAAGA-AT--ATC---GATAACA--GACATGAC-ACTTG--------------------AT-G--TAAAATATTAT-CGTCTTGTGCATTTGGgcaatttgtttttcaaggataatgtaataactattttt
gi|11 : AAATTTT-----AAAG-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGA
gi|12 : ataatatttatacagaaagcagaaactatatatccattgccttgagataggcctacttacagcaatttcaaaatactgtaattaaA-TATA-----------------TACCA-----ATTGCTAGAG-ATA-C---TTACA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-CAGAT-A-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CA
gi|13 : -TGTGATT-T--AAG--G-TTTTGA-CAAA---ATGAGATTGCTGACT-CTTG-CAACG-------AATCTATTCTGCAGAA-----------CA--------------T---T-----T--------------TATATTTGTTGATTATG-CA------TGC-AACATA-----ACATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTT
gi|14 : TTTA-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-C---------------------ATTCTACAAAA-----------CA--------------T---T-----TTATACTTGTAAATCC--------------TG-CA------TGC-AACGTA------------------T-AT-----------GA-GAACCACT----TTGTT--ATCTTCGT--AGTA-AAACC
gi|15 : TTTTTC---TT--AAAAAAA-CAATTTT-ATTAGT-TATTTTGAT-CCATC-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--
gi|16 : attaaacaattttgatggttttggtttgaatggaaaataaacTCATCATTTCTTCTTT---TT----------TAATAAT-ATTTCT-TAATTTGAC-CCATT-TACAA--A--TTCGAT--GCAGCCC-AGGTCAGATA-AT--ATT---AATATCATTG-CTTTATTG-ATA--------------------AA-A--CAAAATAT
gi|17 : ttaAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAACA--GACATAACTATATA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTTGATATGA
gi|18 : GAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAAC
gi|19 : ttcaaaaagtattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATTTTTTTTTTTTT---TTAAA-------TAATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAA
gi|2 : ttaTTTTATTATTATTTTTTT---TT----------TATTTTT-ATTAGT-TATTTTGAC-CTATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAACA--AACATAACTATATA--------------------AA-G--CAAAATATCATACATCATGTGCATTTGGCAATATATG-GTAAATATGATTTATGAAGT-----------AAT----AA----A------CGCCATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAC-ATA-CT--T-GTA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-TGTGA-T-T--AAG--G-TTTTGG-CAAA---TCGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----TGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTTAAATAGATTCTTTAAT--GTTTTCCATAATTTTTC-A--T-AAC-AT-TTA--TACATT-----CGAAAAT-------GCTTAG-AGCTTTCGATTTTGTCTAA-----ATAATTGGAACATTTGGGAG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTGC-AACAGAGCAAA---GTATTCAAAAAGTTT--AAAATTAAATTCagaaa
gi|3 : gGAAGT-----------AAT----AA----A------TGACATTG-TGAA--A---T-ATAATG-------------ATT-AA-GTCAATATA---------------TTTAC-A-----AT-GCTTGAC-ATAAT---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGT----GAGAT--ATTTGCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TTGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAAATTTTTATATTCG--------------TAGAT-----T--------------C--------------TG-CA------TGC-AACATA-----ATATATAT-AAATT-ATT---C----AAAA-GTACCACGT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TACT--GTTTTCCA-ATTTTTTCTA--TTAAC-AT-TTA--TACATT-----CGAAAATTTAA---TCTTAG-AGTTTTCGATTTTATCCAA-----ACAATTGGAACATTTGGGGG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---TTATTC-AGAAGTTT--AAAATTAAAATCcagtacattt
gi|3 : --A-------TAATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--C--TTCGAT--gaagttgtaaatgggtcaaaataactaataaaattatttt
gi|4 : gaagtaataaatgacattgtgaaatataatgattaagtcaatatatttacaatgcttgacataattaaagcatttcagataatttattaaaaagatgtgtttgtagtgagatatttgcttttcttaataacagaacatgtaaatttcaagtgtgatttaaggttttgacaaattgagatttctgactcttgcaacgaatctattctacagaaatttttatattcgtagattctgcatgcaacataatatatataaattattcaaaagtaccacgttgttgttatcttcatagtagaaacccacaactatgtgcttccattgaatttcaaagtttaaaatagattctactgttttccaattttttctattaacatttatacattcgaaaatttaatcttagagttttcgattttatccaaacaattggaacatttgggggatgcatgtttccatttgcttagagataaattacaacagagcaaattattcagaagtttaaaattaaaTTTTACCAT-ATTTTTTT---TA--A-------TAATTTT-ATTAGT-TATTT---C-CCATT--ACAATAA--TTCGAT--ATAGTCCCGGGTCAGACA-AT--ATC---GATAACA--GACATAA------------------------------G--CAAAATATTATACATCATG-GCA-----CAATATATG-GTAGA------------AGT-----------AAT----AA----A------CGACATTG-TGAA------T-ATAATG-------------ATT-AA-GTCA-TA-A-------------A-TTTGC-A-----ATTGCTTGAC-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TATT----GAGAT--TTT-GCTTTTCTTAAT--A-CAGAACATGTAA--TTC-----AA-G-TGTGA-T-T--AAG--GTTTTTGA-CAAA---TTGAGATTTCTGACT-CTTGCCAACG-------AATCTATTCTAC-GAA-----------CATTTTATATTTGTAGT---T-----T--------------C--------------TGCCA------TGCAAACATA-----AGATA-ATAAAATT-ATT---C----AAAAGGTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TGTTGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATCATTG-A----AAC-ATATTA-GTACATT-----CGAAttt
gi|5 : atttgagcatTT---TG--A-------TATTTCA-ATTAGCATATCTTAAC-CCATT-TACAT--G--TTCGATTAACAATC--GGATCAGACA-AT--ATC---GATAACA--
gi|5 : ttcgaaaggtgtttaggtgtcgttcctgactgattcaGAT-ATA-CAAAT-CAA--GATCAC-TTTCGA-ATAATCT-AAATA-AATAAGATTG-TGT-GT-G-AAGC----GACAT--GTT-GCTGTTCTCAATTAA-AAGAACATGTACATTTT-----GG-A-TGTGACTGT--AAGAGG-TTTTGA-GAAA---TCGAGATTTCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacgatatacaaatcaagatcactttcgaataatctaaataaataagattgtgtgtgaagcgacatgttgctgttctcaattaaaagaacatgtacattttggatgtgactgtaagaggttttgagaaatcgagatttctgat
gi|6 : ttcgaaaggtgtttaggtgtcgttcctgactgattcatttgatatttcaattagcatatcttaacccatttacatgttcgattaacaatcggatcagacaatatcgataacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacTTTTT---TT--AAAGAA--TATTTTTTATTACT-CATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCT-GGGTCAAACA-AT--ATC---GATAACA--GACGTAACTATGTACATATGTCCGGGACATATGTAATA--CAAAATATTTTGCATCATGTGCATTTAGCTATATATG-GTAGATATGGTATATGAAGC-----------AAT----AAACACA------CGACATTG-TGAA--A---T-ATAAT---------------T---------------------------A-TTTAA-A-----ATTGCTTGAG-ATA-CT--T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-Gt
gi|7 : c-G--CAAAATATTATACAT---------TTGGCAATACATC-CTAGATATGATTTATTTAGTGTCATACACACAAT----AA----AATTGAACGACATTG-TGAACTA---TTATAATTCATAAAACATCCCATT-AAAGT-A-TATACGCTGAAAGCAGAA-ACTAT-ACCCCCATTGCTTGAG-ATA-C---T-AAA--G--CA--ATTCCG-ATCATTT-AT-TACAA-AATAT-G-TGT-TT-G-TAGC----GATAT--GTT-GCTTTTCTTAAT-AA-CAGAGCATGTGAATTTT-----AA-G-TGCGATT-T--AAA--G-TTTTGA-TAAA---TCAAGATTTCAGA
gi|8 : T--A-------TACTGTA-TTTAGC-TATTTTGAC-CCATT-TTCAA--A--TTCGAT--ATGGTTT--GGTCAGACA-AT--GTCGCGGATAACA--GACATAACTAAGTA--------------------AC-G--CAAAA---TATACATCATGTGCATTTGGCAGTATACACCTAGATATGGTTTATGAAGT-----------AATAAACAA----A------CGACATTG-TGAA--A---T-AT
gi|9 : -----ATTGCTTGAAGATA-C---T-AAACGG--CAATTTCCGG-ATCATTTTAT-TA-CA-GAAAT-GGTGT-TTTG-TAGC----GATATTGGTT-GCTTTTCTTAAT-AAGCAG-ACATGTGAATTTT-----AA-GTTGCGATT-TA-AAA--G-TTTTGATTAAA---TTAAGATTTCAGAtgcttgagata
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 44444444444444 555555555555555555555555555 22222222222 1111 11111111111 111111 555555555555555555555555555555555555555555555 11111 111 11 11 1 11111 2222222 2222222222222222222222222222222222222222222222222222222222222222222 111111 2222222 22222222 11 11 2222 1 1 11 22 11 1 222222 1 1 22 22222 4444444 1 33333 1 1 11 1 1 2222 1 11
lowQualScore : 3 0 66666666666666 1 3 3 3 3 44 44 44 77 3 44 666 55 000000000000000000000000000 44 66 3 3 3 5 5 4444 77777777777 2222 99999999999 5 555555 5 111111111111111111111111111111111111111111111 5 22222 55 4 666 4 66 66 00 4 8 4 4 4 4 4 4 4 4 9999 22 4 0 5 00000 4 7 1 3 88 55 3 3 777 5 6 6 1111111 9999999999999999999999999999999999999999999999999999999999999999999 6 999999 6 2222222 6 6 6 00000000 6 6 11 11 0 1111 0 0 33 9 33 0 33 0 888888 0 0 55 55555 2222222 3 33333 1 7 7 3 0 3 88 3 3 4444 3 88
lowQualScore : . . .............. . . . . . .. .. .. .. . .. ... .. ........................... .. .. . . . . . .... ........... .... ........... . ...... . ............................................. . ..... .. . ... . .. .. .. . . . . . . . . . . .... .. . . . ..... . . . . .. .. . . ... . . . ....... ................................................................... . ...... . ....... . . . ........ . . .. .. . .... . . .. . .. . .. . ...... . . .. ..... ....... . ..... . . . . . . .. . . .... . ..
lowQualScore : 5 5 77777777777777 0 6 6 1 1 22 22 22 77 3 66 444 55 444444444444444444444444444 77 11 4 1 1 7 0 5555 11111111111 1111 66666666666 7 999999 7 000000000000000000000000000000000000000000000 7 55555 44 4 777 4 11 11 66 4 9 4 4 4 4 4 4 4 4 4444 22 4 0 0 00000 0 3 3 6 66 00 6 6 000 5 7 7 7777777 3333333333333333333333333333333333333333333333333333333333333333333 7 222222 7 7777777 7 7 7 00000000 7 7 00 00 8 2222 0 0 88 8 88 2 88 0 000000 0 0 00 00000 0000000 3 33333 0 3 3 3 7 3 33 3 3 3333 3 33
consensus : NTTTTATCGTTTTTTTTTTTT--A-----------TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAN-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
Reference ( family-5680 ) : NTTTTATCGTTTTTTTTTTTT--A-----------TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAN-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
gi|1 : TTTTTTC--TTTTTTTTTTT--AATTATTATTATTATTTTT-ATTAGT-T-TTTTGACGCCATT-T-CAA--ATTTTCGAT--AT-GTC---GGTCAGACAGATTAATC---G--AACA--AA-ATAAAGACGTGAT------------------AA-GTTCAAAATA-TATACATC---------TGG-AATATATG-GTAGA---GATTC-------------------AT----AA----A------CGACATTGATGAA--ATTTT-AAAATG-------------ATTAAAAGTCA-TATA-------------ATTTTTC-A-----ATTGCTTGAC-ATA-C---A-AAA--G--C---TTTCAGAATAATTTAAT-TA-AA-AAAAG-G-AGTGTT-GTTAGTATTAGAGATAGGTT-GCTTTTCTTAATAAA-CAGAACATGTAAATTTTTTTTCAA-GTTGTGATT-TCAAAG--G-TTTTGA-CAAAGGGTTGGAGTTT--GACTACTTG-CAACGAAATAATAATTTGCACTTCAGAA-----------CA--------------T---TTATAAT--------------T--------------TG-TAGATATCTGC-AGGGTGCTAATAGATA-AT-AAATTAATTAAGCAATAAAAG-GTACTACTTATGTTGTCTAATTTTAGTTAAGTAGAA--CCACAACTAATTTTG-TGCTTCCATTGAAATTTCGAAAAGTTT-AAATAGATTCA-TAGTAGGTTTTCCA-AATTTATC-AAGT-AACAAT-TTAGGTGCAATATAAGAAAAAATT-AAAATGCTTAGAAGTTTTCGTTATTATATAATTCACAAAATTGG-AC-TTTGGGGGTACGCATGATTTCCAAATTTGCTTTAAGATTAAATTACAAACAGAAGAAACTTATATAC-AGAAGTTTGCAAAATTAAATTC
gi|10 : tttTTTT-TTGTTTTTTTTTTTTAGA-----------TATCTTT-ATTAGC-TATTTTAAC-TCATTCTACAA--A---TAGGT--ATACTCCGGGGTCAAAGA-AT--ATC---GATAACA--GACATGAC-ACTTG--------------------AT-G--TAAAATATTAT-CGTCTTGTGCATTTGGgcaatttgtttttcaaggataatgtaataactattttt
gi|11 : AAATTTT-----AAAG-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGA
gi|12 : ataatatttatacagaaagcagaaactatatatccattgccttgagataggcctacttacagcaatttcaaaatactgtaattaaA-TATA-----------------TACCA-----ATTGCTAGAG-ATA-C---TTACA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-CAGAT-A-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CA
gi|13 : -TGTGATT-T--AAG--G-TTTTGA-CAAA---ATGAGATTGCTGACT-CTTG-CAACG-------AATCTATTCTGCAGAA-----------CA--------------T---T-----T--------------TATATTTGTTGATTATG-CA------TGC-AACATA-----ACATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTT
gi|14 : TTTA-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-C---------------------ATTCTACAAAA-----------CA--------------T---T-----TTATACTTGTAAATCC--------------TG-CA------TGC-AACGTA------------------T-AT-----------GA-GAACCACT----TTGTT--ATCTTCGT--AGTA-AAACC
gi|15 : TTTTTCTT--AAAAAAA-----CAATTTT-ATTAGT-TATTTTGAT-CCATC-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--
gi|16 : attaaacaattttgatggttttggtttgaatggaaaataaacTCATCATTTCTTCTTTTT--------------TAATAAT-ATTTCT-TAATTTGAC-CCATT-TACAA--A--TTCGAT--GCAGCCC-AGGTCAGATA-AT--ATT---AATATCATTG-CTTTATTG-ATA--------------------AA-A--CAAAATAT
gi|17 : ttaAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAACA--GACATAACTATATA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTTGATATGA
gi|18 : GAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAAC
gi|19 : ttcaaaaagtattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATTTTTTTTTTTTTTTAAA-----------TAATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAA
gi|2 : ttaTTTTATTATTATTTTTTTTT--------------TATTTTT-ATTAGT-TATTTTGAC-CTATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAACA--AACATAACTATATA--------------------AA-G--CAAAATATCATACATCATGTGCATTTGGCAATATATG-GTAAATATGATTTATGAAGT-----------AAT----AA----A------CGCCATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAC-ATA-CT--T-GTA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-TGTGA-T-T--AAG--G-TTTTGG-CAAA---TCGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----TGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTTAAATAGATTCTTTAAT--GTTTTCCATAATTTTTC-A--T-AAC-AT-TTA--TACATT-----CGAAAAT-------GCTTAG-AGCTTTCGATTTTGTCTAA-----ATAATTGGAACATTTGGGAG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTGC-AACAGAGCAAA---GTATTCAAAAAGTTT--AAAATTAAATTCagaaa
gi|3 : gGAAGT-----------AAT----AA----A------TGACATTG-TGAA--A---T-ATAATG-------------ATT-AA-GTCAATATA---------------TTTAC-A-----AT-GCTTGAC-ATAAT---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGT----GAGAT--ATTTGCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TTGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAAATTTTTATATTCG--------------TAGAT-----T--------------C--------------TG-CA------TGC-AACATA-----ATATATAT-AAATT-ATT---C----AAAA-GTACCACGT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TACT--GTTTTCCA-ATTTTTTCTA--TTAAC-AT-TTA--TACATT-----CGAAAATTTAA---TCTTAG-AGTTTTCGATTTTATCCAA-----ACAATTGGAACATTTGGGGG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---TTATTC-AGAAGTTT--AAAATTAAAATCcagtacattt
gi|3 : --A-----------TAATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--C--TTCGAT--gaagttgtaaatgggtcaaaataactaataaaattatttt
gi|4 : gaagtaataaatgacattgtgaaatataatgattaagtcaatatatttacaatgcttgacataattaaagcatttcagataatttattaaaaagatgtgtttgtagtgagatatttgcttttcttaataacagaacatgtaaatttcaagtgtgatttaaggttttgacaaattgagatttctgactcttgcaacgaatctattctacagaaatttttatattcgtagattctgcatgcaacataatatatataaattattcaaaagtaccacgttgttgttatcttcatagtagaaacccacaactatgtgcttccattgaatttcaaagtttaaaatagattctactgttttccaattttttctattaacatttatacattcgaaaatttaatcttagagttttcgattttatccaaacaattggaacatttgggggatgcatgtttccatttgcttagagataaattacaacagagcaaattattcagaagtttaaaattaaaTTTTACCATATTTTTTTTA---A-----------TAATTTT-ATTAGT-TATTT---C-CCATT--ACAATAA--TTCGAT--ATAGTCCCGGGTCAGACA-AT--ATC---GATAACA--GACATAA------------------------------G--CAAAATATTATACATCATG-GCA-----CAATATATG-GTAGA------------AGT-----------AAT----AA----A------CGACATTG-TGAA------T-ATAATG-------------ATT-AA-GTCA-TA-A-------------A-TTTGC-A-----ATTGCTTGAC-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TATT----GAGAT--TTT-GCTTTTCTTAAT--A-CAGAACATGTAA--TTC-----AA-G-TGTGA-T-T--AAG--GTTTTTGA-CAAA---TTGAGATTTCTGACT-CTTGCCAACG-------AATCTATTCTAC-GAA-----------CATTTTATATTTGTAGT---T-----T--------------C--------------TGCCA------TGCAAACATA-----AGATA-ATAAAATT-ATT---C----AAAAGGTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TGTTGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATCATTG-A----AAC-ATATTA-GTACATT-----CGAAttt
gi|5 : atttgagcatTTTG--A-----------TATTTCA-ATTAGCATATCTTAAC-CCATT-TACAT--G--TTCGATTAACAATC--GGATCAGACA-AT--ATC---GATAACA--
gi|5 : ttcgaaaggtgtttaggtgtcgttcctgactgattcaGAT-ATA-CAAAT-CAA--GATCAC-TTTCGA-ATAATCT-AAATA-AATAAGATTG-TGT-GT-G-AAGC----GACAT--GTT-GCTGTTCTCAATTAA-AAGAACATGTACATTTT-----GG-A-TGTGACTGT--AAGAGG-TTTTGA-GAAA---TCGAGATTTCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacgatatacaaatcaagatcactttcgaataatctaaataaataagattgtgtgtgaagcgacatgttgctgttctcaattaaaagaacatgtacattttggatgtgactgtaagaggttttgagaaatcgagatttctgat
gi|6 : ttcgaaaggtgtttaggtgtcgttcctgactgattcatttgatatttcaattagcatatcttaacccatttacatgttcgattaacaatcggatcagacaatatcgataacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacTTTTTTT--AAAGAA------TATTTTTTATTACT-CATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCT-GGGTCAAACA-AT--ATC---GATAACA--GACGTAACTATGTACATATGTCCGGGACATATGTAATA--CAAAATATTTTGCATCATGTGCATTTAGCTATATATG-GTAGATATGGTATATGAAGC-----------AAT----AAACACA------CGACATTG-TGAA--A---T-ATAAT---------------T---------------------------A-TTTAA-A-----ATTGCTTGAG-ATA-CT--T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-Gt
gi|7 : c-G--CAAAATATTATACAT---------TTGGCAATACATC-CTAGATATGATTTATTTAGTGTCATACACACAAT----AA----AATTGAACGACATTG-TGAACTA---TTATAATTCATAAAACATCCCATT-AAAGT-A-TATACGCTGAAAGCAGAA-ACTAT-ACCCCCATTGCTTGAG-ATA-C---T-AAA--G--CA--ATTCCG-ATCATTT-AT-TACAA-AATAT-G-TGT-TT-G-TAGC----GATAT--GTT-GCTTTTCTTAAT-AA-CAGAGCATGTGAATTTT-----AA-G-TGCGATT-T--AAA--G-TTTTGA-TAAA---TCAAGATTTCAGA
gi|8 : T--A-----------TACTGTA-TTTAGC-TATTTTGAC-CCATT-TTCAA--A--TTCGAT--ATGGTTT--GGTCAGACA-AT--GTCGCGGATAACA--GACATAACTAAGTA--------------------AC-G--CAAAA---TATACATCATGTGCATTTGGCAGTATACACCTAGATATGGTTTATGAAGT-----------AATAAACAA----A------CGACATTG-TGAA--A---T-AT
gi|9 : -----ATTGCTTGAAGATA-C---T-AAACGG--CAATTTCCGG-ATCATTTTAT-TA-CA-GAAAT-GGTGT-TTTG-TAGC----GATATTGGTT-GCTTTTCTTAAT-AAGCAG-ACATGTGAATTTT-----AA-GTTGCGATT-TA-AAA--G-TTTTGATTAAA---TTAAGATTTCAGAtgcttgagata
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 44444444444444 555555555555555555555555555 22222222222 1111 11111111111 111111 555555555555555555555555555555555555555555555 11111 111 11 11 1 11111 2222222 2222222222222222222222222222222222222222222222222222222222222222222 111111 2222222 22222222 11 11 2222 1 1 11 22 11 1 222222 1 1 22 22222 4444444 1 33333 1 1 11 1 1 2222 1 11
lowQualScore : 3 0 66666666666666 1 3 3 3 3 44 44 44 77 3 44 666 55 000000000000000000000000000 44 66 3 3 3 5 5 4444 77777777777 2222 99999999999 5 555555 5 111111111111111111111111111111111111111111111 5 22222 55 4 666 4 66 66 00 4 8 4 4 4 4 4 4 4 4 9999 22 4 0 5 00000 4 7 1 3 88 55 3 3 777 5 6 6 1111111 9999999999999999999999999999999999999999999999999999999999999999999 6 999999 6 2222222 6 6 6 00000000 6 6 11 11 0 1111 0 0 33 9 33 0 33 0 888888 0 0 55 55555 2222222 3 33333 1 7 7 3 0 3 88 3 3 4444 3 88
lowQualScore : . . .............. . . . . . .. .. .. .. . .. ... .. ........................... .. .. . . . . . .... ........... .... ........... . ...... . ............................................. . ..... .. . ... . .. .. .. . . . . . . . . . . .... .. . . . ..... . . . . .. .. . . ... . . . ....... ................................................................... . ...... . ....... . . . ........ . . .. .. . .... . . .. . .. . .. . ...... . . .. ..... ....... . ..... . . . . . . .. . . .... . ..
lowQualScore : 5 5 77777777777777 0 6 6 1 1 22 22 22 77 3 66 444 55 444444444444444444444444444 77 11 4 1 1 7 0 5555 11111111111 1111 66666666666 7 999999 7 000000000000000000000000000000000000000000000 7 55555 44 4 777 4 11 11 66 4 9 4 4 4 4 4 4 4 4 4444 22 4 0 0 00000 0 3 3 6 66 00 6 6 000 5 7 7 7777777 3333333333333333333333333333333333333333333333333333333333333333333 7 222222 7 7777777 7 7 7 00000000 7 7 00 00 8 2222 0 0 88 8 88 2 88 0 000000 0 0 00 00000 0000000 3 33333 0 3 3 3 7 3 33 3 3 3333 3 33
consensus : NTTTTATCGTTTTTTTTTTTT--A-----------TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAN-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
Reference ( family-5680 ) : NTTTTATCGTTTTTTTTTTTT--A-----------TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAN-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
gi|1 : TTTTTTC--TTTTTTTTTTT--AATTATTATTATTATTTTT-ATTAGT-T-TTTTGACGCCATT-T-CAA--ATTTTCGAT--AT-GTC---GGTCAGACAGATTAATC---G--AACA--AA-ATAAAGACGTGAT------------------AA-GTTCAAAATA-TATACATC---------TGG-AATATATG-GTAGA---GATTC-------------------AT----AA----A------CGACATTGATGAA--ATTTT-AAAATG-------------ATTAAAAGTCA-TATA-------------ATTTTTC-A-----ATTGCTTGAC-ATA-C---A-AAA--G--C---TTTCAGAATAATTTAAT-TA-AA-AAAAG-G-AGTGTT-GTTAGTATTAGAGATAGGTT-GCTTTTCTTAATAAA-CAGAACATGTAAATTTTTTTTCAA-GTTGTGATT-TCAAAG--G-TTTTGA-CAAAGGGTTGGAGTTT--GACTACTTG-CAACGAAATAATAATTTGCACTTCAGAA-----------CA--------------T---TTATAAT--------------T--------------TG-TAGATATCTGC-AGGGTGCTAATAGATA-AT-AAATTAATTAAGCAATAAAAG-GTACTACTTATGTTGTCTAATTTTAGTTAAGTAGAA--CCACAACTAATTTTG-TGCTTCCATTGAAATTTCGAAAAGTTT-AAATAGATTCA-TAGTAGGTTTTCCA-AATTTATC-AAGT-AACAAT-TTAGGTGCAATATAAGAAAAAATT-AAAATGCTTAGAAGTTTTCGTTATTATATAATTCACAAAATTGG-AC-TTTGGGGGTACGCATGATTTCCAAATTTGCTTTAAGATTAAATTACAAACAGAAGAAACTTATATAC-AGAAGTTTGCAAAATTAAATTC
gi|10 : tttTTTT-TTGTTTTTTTTTTTTAGA-----------TATCTTT-ATTAGC-TATTTTAAC-TCATTCTACAA--A---TAGGT--ATACTCCGGGGTCAAAGA-AT--ATC---GATAACA--GACATGAC-ACTTG--------------------AT-G--TAAAATATTAT-CGTCTTGTGCATTTGGgcaatttgtttttcaaggataatgtaataactattttt
gi|11 : AAATTTT-----AAAG-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGA
gi|12 : ataatatttatacagaaagcagaaactatatatccattgccttgagataggcctacttacagcaatttcaaaatactgtaattaaA-TATA-----------------TACCA-----ATTGCTAGAG-ATA-C---TTACA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-CAGAT-A-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CA
gi|13 : -TGTGATT-T--AAG--G-TTTTGA-CAAA---ATGAGATTGCTGACT-CTTG-CAACG-------AATCTATTCTGCAGAA-----------CA--------------T---T-----T--------------TATATTTGTTGATTATG-CA------TGC-AACATA-----ACATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTT
gi|14 : TTTA-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-C---------------------ATTCTACAAAA-----------CA--------------T---T-----TTATACTTGTAAATCC--------------TG-CA------TGC-AACGTA------------------T-AT-----------GA-GAACCACT----TTGTT--ATCTTCGT--AGTA-AAACC
gi|15 : TTTTTCTT--AAAAAAA-----CAATTTT-ATTAGT-TATTTTGAT-CCATC-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--
gi|16 : attaaacaattttgatggttttggtttgaatggaaaataaacTCATCATTTCTTCTTTTT--------------TAATAAT-ATTTCT-TAATTTGAC-CCATT-TACAA--A--TTCGAT--GCAGCCC-AGGTCAGATA-AT--ATT---AATATCATTG-CTTTATTG-ATA--------------------AA-A--CAAAATAT
gi|17 : ttaAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAACA--GACATAACTATATA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTTGATATGA
gi|18 : GAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAAC
gi|19 : ttcaaaaagtattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATTTTTTTTTTTTTTTAAA-----------TAATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAA
gi|2 : ttaTTTTATTATTATTTTTTTTT--------------TATTTTT-ATTAGT-TATTTTGAC-CTATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---AATAACA--AACATAACTATATA--------------------AA-G--CAAAATATCATACATCATGTGCATTTGGCAATATATG-GTAAATATGATTTATGAAGT-----------AAT----AA----A------CGCCATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAC-ATA-CT--T-GTA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-TGTGA-T-T--AAG--G-TTTTGG-CAAA---TCGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----TGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTTAAATAGATTCTTTAAT--GTTTTCCATAATTTTTC-A--T-AAC-AT-TTA--TACATT-----CGAAAAT-------GCTTAG-AGCTTTCGATTTTGTCTAA-----ATAATTGGAACATTTGGGAG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTGC-AACAGAGCAAA---GTATTCAAAAAGTTT--AAAATTAAATTCagaaa
gi|3 : gGAAGT-----------AAT----AA----A------TGACATTG-TGAA--A---T-ATAATG-------------ATT-AA-GTCAATATA---------------TTTAC-A-----AT-GCTTGAC-ATAAT---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGT----GAGAT--ATTTGCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TTGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAAATTTTTATATTCG--------------TAGAT-----T--------------C--------------TG-CA------TGC-AACATA-----ATATATAT-AAATT-ATT---C----AAAA-GTACCACGT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TACT--GTTTTCCA-ATTTTTTCTA--TTAAC-AT-TTA--TACATT-----CGAAAATTTAA---TCTTAG-AGTTTTCGATTTTATCCAA-----ACAATTGGAACATTTGGGGG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---TTATTC-AGAAGTTT--AAAATTAAAATCcagtacattt
gi|3 : --A-----------TAATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--C--TTCGAT--gaagttgtaaatgggtcaaaataactaataaaattatttt
gi|4 : gaagtaataaatgacattgtgaaatataatgattaagtcaatatatttacaatgcttgacataattaaagcatttcagataatttattaaaaagatgtgtttgtagtgagatatttgcttttcttaataacagaacatgtaaatttcaagtgtgatttaaggttttgacaaattgagatttctgactcttgcaacgaatctattctacagaaatttttatattcgtagattctgcatgcaacataatatatataaattattcaaaagtaccacgttgttgttatcttcatagtagaaacccacaactatgtgcttccattgaatttcaaagtttaaaatagattctactgttttccaattttttctattaacatttatacattcgaaaatttaatcttagagttttcgattttatccaaacaattggaacatttgggggatgcatgtttccatttgcttagagataaattacaacagagcaaattattcagaagtttaaaattaaaTTTTACCATATTTTTTTTA---A-----------TAATTTT-ATTAGT-TATTT---C-CCATT--ACAATAA--TTCGAT--ATAGTCCCGGGTCAGACA-AT--ATC---GATAACA--GACATAA------------------------------G--CAAAATATTATACATCATG-GCA-----CAATATATG-GTAGA------------AGT-----------AAT----AA----A------CGACATTG-TGAA------T-ATAATG-------------ATT-AA-GTCA-TA-A-------------A-TTTGC-A-----ATTGCTTGAC-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TATT----GAGAT--TTT-GCTTTTCTTAAT--A-CAGAACATGTAA--TTC-----AA-G-TGTGA-T-T--AAG--GTTTTTGA-CAAA---TTGAGATTTCTGACT-CTTGCCAACG-------AATCTATTCTAC-GAA-----------CATTTTATATTTGTAGT---T-----T--------------C--------------TGCCA------TGCAAACATA-----AGATA-ATAAAATT-ATT---C----AAAAGGTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TGTTGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATCATTG-A----AAC-ATATTA-GTACATT-----CGAAttt
gi|5 : atttgagcatTTTG--A-----------TATTTCA-ATTAGCATATCTTAAC-CCATT-TACAT--G--TTCGATTAACAATC--GGATCAGACA-AT--ATC---GATAACA--
gi|5 : ttcgaaaggtgtttaggtgtcgttcctgactgattcaGAT-ATA-CAAAT-CAA--GATCAC-TTTCGA-ATAATCT-AAATA-AATAAGATTG-TGT-GT-G-AAGC----GACAT--GTT-GCTGTTCTCAATTAA-AAGAACATGTACATTTT-----GG-A-TGTGACTGT--AAGAGG-TTTTGA-GAAA---TCGAGATTTCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacgatatacaaatcaagatcactttcgaataatctaaataaataagattgtgtgtgaagcgacatgttgctgttctcaattaaaagaacatgtacattttggatgtgactgtaagaggttttgagaaatcgagatttctgat
gi|6 : ttcgaaaggtgtttaggtgtcgttcctgactgattcatttgatatttcaattagcatatcttaacccatttacatgttcgattaacaatcggatcagacaatatcgataacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacTTTTTTT--AAAGAA------TATTTTTTATTACT-CATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCT-GGGTCAAACA-AT--ATC---GATAACA--GACGTAACTATGTACATATGTCCGGGACATATGTAATA--CAAAATATTTTGCATCATGTGCATTTAGCTATATATG-GTAGATATGGTATATGAAGC-----------AAT----AAACACA------CGACATTG-TGAA--A---T-ATAAT---------------T---------------------------A-TTTAA-A-----ATTGCTTGAG-ATA-CT--T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-Gt
gi|7 : c-G--CAAAATATTATACAT---------TTGGCAATACATC-CTAGATATGATTTATTTAGTGTCATACACACAAT----AA----AATTGAACGACATTG-TGAACTA---TTATAATTCATAAAACATCCCATT-AAAGT-A-TATACGCTGAAAGCAGAA-ACTAT-ACCCCCATTGCTTGAG-ATA-C---T-AAA--G--CA--ATTCCG-ATCATTT-AT-TACAA-AATAT-G-TGT-TT-G-TAGC----GATAT--GTT-GCTTTTCTTAAT-AA-CAGAGCATGTGAATTTT-----AA-G-TGCGATT-T--AAA--G-TTTTGA-TAAA---TCAAGATTTCAGA
gi|8 : T--A-----------TACTGTA-TTTAGC-TATTTTGAC-CCATT-TTCAA--A--TTCGAT--ATGGTTT--GGTCAGACA-AT--GTCGCGGATAACA--GACATAACTAAGTA--------------------AC-G--CAAAA---TATACATCATGTGCATTTGGCAGTATACACCTAGATATGGTTTATGAAGT-----------AATAAACAA----A------CGACATTG-TGAA--A---T-AT
gi|9 : -----ATTGCTTGAAGATA-C---T-AAACGG--CAATTTCCGG-ATCATTTTAT-TA-CA-GAAAT-GGTGT-TTTG-TAGC----GATATTGGTT-GCTTTTCTTAAT-AAGCAG-ACATGTGAATTTT-----AA-GTTGCGATT-TA-AAA--G-TTTTGATTAAA---TTAAGATTTCAGAtgcttgagata
blockSeqs : A G AAAAAAA T T A . C TA . TA CG . . GCG TT CTATGTACATATGTCCGGGACATATGT AT . T T T C T ATGA GTCATACACAC AAAC AATTGAA . CTA T TCATAAAACATCCCATTAAAGTATATACGCTGAAAGCAGAA C CCCCC AG A AAA T CG AT AT . T A C T T G . T . . TG T T G . A T T G A AG T T . C . C . CATTTTATATTTGTTGATTA C . A AC T A . C G . . . . T . . T TT . T TATT . A G . TTAA . . T A A . . . . . G A .
blockSeqs : A A AAAGAA A . . . . . . . CC . . . . CTATATA T . A T T . T ATGA . . ACACA . A . GATTAAAGTCATATAA . . G . T . . . C . . . . . . . . . . . . . . . . . . T . . . . . . T . . . CATTTTATACTTGTAAATCC . . . TG . . . C . . . . . . . . A . . . AT . . . . . . . C A A . . . . . T . .
blockSeqs : A T AGA A . . . . . . . C . . . . CTATATA A . A T T . T ATTT . . A . A . GATTAAGTCAATATA . . C . T . . . . . . . . . . . . . . . . . . . . . . T . . . . . . C . . . ATTTTTATATTCGTAGATTC . . . AT . . . C . . . . . . . . A . . . A . . . .
blockSeqs : A A AAA A . . . . . . . C . . . . CTAAGTA A . A T T . T ATGA . . A . A . GATTAAGTCATAAA . . C . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . T . . . CATTTTATATTTGTAGTTTC . . . AG . . . C . . . .
blockSeqs : . A A T . . . . . . . C . . . . CACTTG A . A T T . T . . . A . A . TA . . C . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . T . . . CATTTC . . . . . . . . . .
blockSeqs : A A . . . . . . . C . . . . TTGATA C . A . . . . . . A . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . T
blockSeqs : A A . . . . . . . C . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . T
blockSeqs : A T . . . . . . . C . . . . . G . . . . . . . . . . . . . . . . . . . . . . T . . . . . . A
blockSeqs : . T . . . . . . . T . . . . . . . . . . . . . . A
blockSeqs : . C . . . . . . . T . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : AA************ ** C* ** CTAGTA********************* ** ATGA A***** GATTAAGTCATATACA***************************** **** ** ***** ** *** ******* ****** AN***** C******* ** **
originalCons : NTTTTATCGTTTTTTTTTTTT--A-----------TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTACGTA--------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAA--A---T-ATAATG-------------ATT-AAAGTCA-TATA-------------A-TTTAC-A-----ATTGCTTGAN-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
finalCons : NTTTTATCGTTTTTTTTTTTTAA------------TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---GATAACA--GACATAACTAGTA---------------------AA-G--CAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAAA-----T-ATAATGATTAAGTCATATACA-----------------------------TTTAC-A-----ATTGCTTGAN-ATA-C---T-AAA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTAAN-----ATA-AT-AAATT-ATTC-------AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22222222222222222222 1111111111 666666666666666666666666666 22222222222 1111 11111111111 1111 55555555555555555555555555555555555555555555 11111 111 11 11 1 11111 2222222 2222222222222222222222222222222222222222222222222222222222222222222 111111 2222222 22222222 11 11 2222 1 1 11 22 11 1 222222 1 1 22 22222 4444444 1 33333 1 1 11 1 1 2222 1 11
lowQualScore : 3 0 5 77777777777777777777 1 4 3 3 3 44 44 44 77 3 44 2222222222 55 111111111111111111111111111 2 6 3 3 3 5 5 4444 77777777777 2222 99999999999 5 1111 1 88888888888888888888888888888888888888888888 0 22222 55 4 222 4 4 66 66 00 4 8 4 4 4 4 4 4 4 4 9999 22 4 0 5 00000 4 7 3 88 55 3 3 777 5 6 6 1111111 9999999999999999999999999999999999999999999999999999999999999999999 6 999999 6 3333333 6 6 6 00000000 6 6 11 11 0 1111 0 0 33 9 33 0 33 0 888888 0 0 55 55555 2222222 3 33333 1 7 7 3 0 3 88 3 3 4444 3 88
lowQualScore : . . . .................... . . . . . .. .. .. .. . .. .......... .. ........................... . . . . . . . .... ........... .... ........... . .... . ............................................ . ..... .. . ... . . .. .. .. . . . . . . . . . . .... .. . . . ..... . . . .. .. . . ... . . . ....... ................................................................... . ...... . ....... . . . ........ . . .. .. . .... . . .. . .. . .. . ...... . . .. ..... ....... . ..... . . . . . . .. . . .... . ..
lowQualScore : 5 5 0 88888888888888888888 0 0 6 1 1 22 22 22 77 3 66 6666666666 55 222222222222222222222222222 0 5 4 1 1 7 0 5555 11111111111 1111 66666666666 7 4444 7 44444444444444444444444444444444444444444444 3 55555 44 4 222 4 4 11 11 66 4 9 4 4 4 4 4 4 4 4 4444 22 4 0 0 00000 0 3 6 66 00 6 6 000 5 7 7 7777777 3333333333333333333333333333333333333333333333333333333333333333333 7 222222 7 5555555 7 7 7 00000000 7 7 00 00 8 2222 0 0 88 8 88 2 88 0 000000 0 0 00 00000 0000000 3 33333 0 3 3 3 7 3 33 3 3 3333 3 33
consensus : NTTTTATCGTTTTTT-TTTT---------TT-A-A-----TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---G------ATAACA--GACATAACT-AT---------------------GTAANGCAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAAA---TATAATGATT-----------------AA-GTCATATACATT------------TACA-----ATTGCTTGAN-ATA-C---T-AA-A--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----AGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
Reference ( family-5680 ) : NTTTTATCGTTTTTT-TTTT---------TT-A-A-----TANTTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---G------ATAACA--GACATAACT-A----------------------GTAAAGCAAAATATTATACATCATGTGCATTTGGCAATATATG-GTAGATATGATTTATGAAGT-----------AAT----AA----A------CGACATTG-TGAAA---TATAATGATT-----------------AA-GTCATATACATT------------TACA-----ATTGCTTGAN-ATA-C---T-AA-A--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----ANATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCGT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATTTTTC-A--T-AAC-AT-TTA-GTACATT-----CGAAAATT-AA---GCTTAG-AGTTTTCGATTTTATCTAA-----ANAATTGGAACATTTGGGGG-ACGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---NTATTC-AGAAGTTT--AAAATTAAATTC
gi|1 : TTTTTTC-TTTTTT-TTTTTAATTATTATT-A-T-----TATTTTT-ATTAGT-T-TTTTGACGCCATT-T-CAA--ATTTTCGAT--AT-GTC---GGTCAGACAGATTAATC---GAACAAAATAA-A--GACGTGATA-A----------------------GT---TCAAAATA-TATACATC---------TGG-AATATATG-GTAGA---GATTC-------------------AT----AA----A------CGACATTGATGAAATTTTAAAATGATTAA---------------AA-GTCATATAATTT------------TTCA-----ATTGCTTGAC-ATA-C---A-AA-A--G--C---TTTCAGAATAATTTAAT-TA-AA-AAAAG-G-AGTGTT-GTTAGTATTAGAGATAGGTT-GCTTTTCTTAATAAA-CAGAACATGTAAATTTTTTTTCAA-GTTGTGATT-TCAAAG--G-TTTTGA-CAAAGGGTTGGAGTTT--GACTACTTG-CAACGAAATAATAATTTGCACTTCAGAA-----------CA--------------T---TTATAAT--------------T--------------TG-TAGATATCTGC-AGGGTGCTAATAGATA-AT-AAATTAATTAAGCAATAAAAG-GTACTACTTATGTTGTCTAATTTTAGTTAAGTAGAA--CCACAACTAATTTTG-TGCTTCCATTGAAATTTCGAAAAGTTT-AAATAGATTCA-TAGTAGGTTTTCCA-AATTTATC-AAGT-AACAAT-TTAGGTGCAATATAAGAAAAAATT-AAAATGCTTAGAAGTTTTCGTTATTATATAATTCACAAAATTGG-AC-TTTGGGGGTACGCATGATTTCCAAATTTGCTTTAAGATTAAATTACAAACAGAAGAAACTTATATAC-AGAAGTTTGCAAAATTAAATTC
gi|10 : tttTTTT-TTGTTTTTT-TTTT---------TT-AGA-----TATCTTT-ATTAGC-TATTTTAAC-TCATTCTACAA--A---TAGGT--ATACTCCGGGGTCAAAGA-AT--ATC---G------ATAACA--GACATGACA-C----------------------TTGATGTAAAATATTAT-CGTCTTGTGCATTTGGgcaatttgtttttcaaggataatgtaataactattttt
gi|11 : AAATTTT-----AAAG-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGA
gi|12 : ataatatttatacagaaagcagaaactatatatccattgccttgagataggcctacttacagcaatttcaaaatactgtaattaaATATAC-----------------CA-----ATTGCTAGAG-ATA-C---TTAC-A--G--CA--TTTCAG-ATAATTT-AT-TA-AA-CAGAT-A-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTT-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CA
gi|13 : at-TGTGATT-T--AAG--G-TTTTGA-CAAA---ATGAGATTGCTGACT-CTTG-CAACG-------AATCTATTCTGCAGAA-----------CA--------------T---T-----T--------------TATATTTGTTGATTATG-CA------TGC-AACATA-----ACATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTT
gi|14 : TTTA-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TCGAGATTTCCGACT-C---------------------ATTCTACAAAA-----------CA--------------T---T-----TTATACTTGTAAATCC--------------TG-CA------TGC-AACGTA------------------T-AT-----------GA-GAACCACTT-TGT---T--ATCTTCGT--AGTA-AAACC
gi|15 : TT-TTTC---------TT-A-AAAAAACAATTTT-ATTAGT-TATTTTGAT-CCATC-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--
gi|16 : attaaacaattttgatggttttggtttgaatggaaaataaacTCATCATTTCTTCTTTT---------TT-A-A-----TAAT----ATTTCT-TAATTTGAC-CCATT-TACAA--A--TTCGAT--GCAGCCC-AGGTCAGATA-AT--ATT---A------ATATCATTG-CTTTATT-G----------------------ATAAAACAAAATAT
gi|17 : ttaAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---A------ATAACA--GACATAACT-AT---------------------ATAAAGCAAAATATTATACATCATGTGCATTTGGCAATATATG-GTTGATATGA
gi|18 : GAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---A------ATAAC
gi|19 : ttcaaaaagtattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATTTTTTTTT-TTTT---------TTAA-A-----TAATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---G------ATAACA--GACATAA
gi|2 : ttaTTTTATTATTATTT-TTTT---------TT---------TATTTTT-ATTAGT-TATTTTGAC-CTATT-TACAA--A--TTCGAT--ATAGTCC-GGGTCAGACA-AT--ATC---A------ATAACA--AACATAACT-AT---------------------ATAAAGCAAAATATCATACATCATGTGCATTTGGCAATATATG-GTAAATATGATTTATGAAGT-----------AAT----AA----A------CGCCATTG-TGAAA---TATAATGATT-----------------AAAGTCATATA-ATT------------TACA-----ATTGCTTGAC-ATA-C---T-TGTA--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-GCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-TGTGATT----AAG--G-TTTTGG-CAAA---TCGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAA-----------CA--------------T---T-----T--------------C--------------TG-CA------TGC-AACGTA-----TGATA-AT-AAATT-ATT---C----AAAA-GTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTTAAATAGATTCTTTAAT--GTTTTCCATAATTTTTC-A--T-AAC-AT-TTA--TACATT-----CGAAAAT-------GCTTAG-AGCTTTCGATTTTGTCTAA-----ATAATTGGAACATTTGGGAG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTGC-AACAGAGCAAA---GTATTCAAAAAGTTT--AAAATTAAATTCagaaa
gi|3 : gGAAGT-----------AAT----AA----A------TGACATTG-TGAAA---TATAATGATT-----------------AA-GTCA-ATATATT------------TACA-----AT-GCTTGAC-ATAAT---T-AA-A--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGT----GAGAT--ATTTGCTTTTCTTAAT-AA-CAGAACATGTAAATTTC-----AA-G-TGTGATT-T--AAG--G-TTTTGA-CAAA---TTGAGATTTCTGACT-CTTG-CAACG-------AATCTATTCTACAGAAATTTTTATATTCG--------------TAGAT-----T--------------C--------------TG-CA------TGC-AACATA-----ATATATAT-AAATT-ATT---C----AAAA-GTACCACGT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TG-TGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TACT--GTTTTCCA-ATTTTTTCTA--TTAAC-AT-TTA--TACATT-----CGAAAATTTAA---TCTTAG-AGTTTTCGATTTTATCCAA-----ACAATTGGAACATTTGGGGG-ATGCATG-TTTCC--ATTTGCTTAGAGA-TAAATTAC-AACAGAGCAAA---TTATTC-AGAAGTTT--AAAATTAAAATCcagtacattt
gi|3 : -A-A-----TAATTTT-ATTAGT-TATTTTGAC-CCATT-TACAA--C--TTCGAT--gaagttgtaaatgggtcaaaataactaataaaattatttt
gi|4 : gaagtaataaatgacattgtgaaatataatgattaagtcaatatatttacaatgcttgacataattaaagcatttcagataatttattaaaaagatgtgtttgtagtgagatatttgcttttcttaataacagaacatgtaaatttcaagtgtgatttaaggttttgacaaattgagatttctgactcttgcaacgaatctattctacagaaatttttatattcgtagattctgcatgcaacataatatatataaattattcaaaagtaccacgttgttgttatcttcatagtagaaacccacaactatgtgcttccattgaatttcaaagtttaaaatagattctactgttttccaattttttctattaacatttatacattcgaaaatttaatcttagagttttcgattttatccaaacaattggaacatttgggggatgcatgtttccatttgcttagagataaattacaacagagcaaattattcagaagtttaaaattaaaTTTTACCATATTTT-TTTT------------A-A-----TAATTTT-ATTAGT-TATTT---C-CCATT--ACAATAA--TTCGAT--ATAGTCCCGGGTCAGACA-AT--ATC---G------ATAACA--GACATAA-------------------------------GCAAAATATTATACATCATG-GCA-----CAATATATG-GTAGA------------AGT-----------AAT----AA----A------CGACATTG-TGAA----TATAATGATT-----------------AA-GTCATA-A-ATT------------TGCA-----ATTGCTTGAC-ATA-C---T-AA-A--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TATT----GAGAT--TTT-GCTTTTCTTAAT--A-CAGAACATGTAA--TTC-----AA-G-TGTGA-T-T--AAG--GTTTTTGA-CAAA---TTGAGATTTCTGACT-CTTGCCAACG-------AATCTATTCTAC-GAA-----------CATTTTATATTTGTAGT---T-----T--------------C--------------TGCCA------TGCAAACATA-----AGATA-ATAAAATT-ATT---C----AAAAGGTACCACTT-TGTTGTT--ATCTTCAT--AGTAGAAACCCACAACTA----TGTTGCTTCCATTG-AATTTC--AAAGTTTAAAATAGATTC--TAGT--GTTTTCCA-AATCATTG-A----AAC-ATATTA-GTACATT-----CGAAtt
gi|5 : atttgagcatT---------TT-G-A-----TATTTCA-ATTAGCATATCTTAAC-CCATT-TACAT--G--TTCGATTAACAATC--GGATCAGACA-AT--ATC---G------ATAACA--
gi|5 : ttcgaaaggtgtttaggtgtcgttcctgactgattcaGAT-ATA-CAAAT-CA-A--GATCAC-TTTCGA-ATAATCT-AAATA-AATAAGATTG-TGT-GT-G-AAGC----GACAT--GTT-GCTGTTCTCAATTAA-AAGAACATGTACATTTT-----GG-A-TGTGACTGT--AAGAGG-TTTTGA-GAAA---TCGAGATTTCTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacgatatacaaatcaagatcactttcgaataatctaaataaataagattgtgtgtgaagcgacatgttgctgttctcaattaaaagaacatgtacattttggatgtgactgtaagaggttttgagaaatcgagatttctgat
gi|6 : ttcgaaaggtgtttaggtgtcgttcctgactgattcatttgatatttcaattagcatatcttaacccatttacatgttcgattaacaatcggatcagacaatatcgataacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatcatagagattataagcgcagaaaacataaacT-TTTT---------TT-A-AAGAA-TATTTTTTATTACT-CATTTTGAC-CCATT-TACAA--A--TTCGAT--ATAGTCT-GGGTCAAACA-AT--ATC---G------ATAACA--GACGTAACT-ATGTACATATGTCCGGGACATATGTAATACAAAATATTTTGCATCATGTGCATTTAGCTATATATG-GTAGATATGGTATATGAAGC-----------AAT----AAACACA------CGACATTG-TGAAA---TATAAT--------------------------------TATT------------TAAA-----ATTGCTTGAG-ATA-CT--T-AA-A--G--CA--TTTCAG-ATAATTT-AT-TA-AA-AAGAT-G-TGT-TT-G-TAGC----GAGAT--GTT-Gt
gi|7 : cGCAAAATATTATACAT---------TTGGCAATACATC-CTAGATATGATTTATTTAGTGTCATACACACAAT----AA----AATTGAACGACATTG-TGAAC---TATTATAATTCATAAAACATCCCATTAAA-GT-ATATACGCTGAAAGCAGAAACTATACCCCCATTGCTTGAG-ATA-C---T-AA-A--G--CA--ATTCCG-ATCATTT-AT-TACAA-AATAT-G-TGT-TT-G-TAGC----GATAT--GTT-GCTTTTCTTAAT-AA-CAGAGCATGTGAATTTT-----AA-G-TGCGATT-T--AAA--G-TTTTGA-TAAA---TCAAGATTTCAGA
gi|8 : TTAGC-TATTTTGAC-CCATT-TTCAA--A--TTCGAT--ATGGTTT--GGTCAGACA-AT--GTCGCGG------ATAACA--GACATAACTAA----------------------GTAACGCAAAA---TATACATCATGTGCATTTGGCAGTATACACCTAGATATGGTTTATGAAGT-----------AATAAACAA----A------CGACATTG-TGAAA---TAT--TGCTT-----------------GA-G
gi|9 : tatactgtat-----ATTGCTTGAAGATA-C---T-AA-ACGG--CAATTTCCGG-ATCATTTTAT-TA-CA-GAAAT-GGTGT-TTTG-TAGC----GATATTGGTT-GCTTTTCTTAAT-AAGCAG-ACATGTGAATTTT-----AA-GTTGCGATT-TA-AAA--G-TTTTGATTAAA---TTAAGATTTCAGAata