lowQualScore : 22222222222222222222222222222222222222222222222222222222222222 1111111111111111 22222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 11111 11 11 1 11111111 22222222222222222222222222222222222222222222222222222222222222 222222222 44444444 11 22222 11 11 11 11111 11111111 1 1 4 333333333333333 33 11 22 1 1111 5555555 1 222 2 1 11 33333333333 1 222 1 4 2222 1 3 11 2 1 2 1 1 2 11 2 5555 33333 1 1 333 1 1 3333 11 777777777777777777777 11 333 2222222222222222 2222 2 2 8888888888888 11 1 333 222 3333333 333 1 1 22 55555555 22 33 3333 11 1 1 11 44444444444444444444444444444444444444444444444444444444444444444 222 22 77777777777777777777777777777777777777777777777777777777777777777777777777777777 22 222 333 1 33 33333333 22222 11 11 66666666666666 11 5555555555555 4
lowQualScore : 2 55 4 8 4 00000 4 8 11 5 5 00 0 66 1 5 88888888 5 77777777777777777777777777777777777777777777777777777777777777 888888888 11111111 5 00 88888 5 55 77 4 33 11 6 99999 6 8 8 66666666 0 8 8 6 8 0 8 777777777777777 8 55 11 0 77 22 6 8 8 3333 2222222 1 2 0 111 0 0 2 1 88 55555555555 3 6 333 3 0 3333 0 0 33 0 0 0 3 0 0 2 0 22 0 3 9999 6 22222 3 0 0 000 0 5 3 8888 3 33 999999999999999999999 6 3 33 555 8888888888888888 2 8888 6 0 6 0 9999999999999 33 0 000 4 222 2 7777777 000 6 0 0 77 00000000 0 77 22 8888 33 5 3 0 33 55555555555555555555555555555555555555555555555555555555555555555 1 6 777 5 0 33 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333 22 0 8 111 555 0 55 8 6 11 88888888 8 7 6 999 22222 6 99 99 22 33333333333333 1 6 55 3333333333333 0
lowQualScore : . .. . . . ..... . . .. . . .. . .. . . ........ . .............................................................. ......... ........ . .. ..... . .. .. . .. .. . ..... . . . ........ . . . . . . . ............... . .. .. . .. .. . . . .... ....... . . . ... . . . . .. ........... . . ... . . .... . . .. . . . . . . . . .. . . .... . ..... . . . ... . . . .... . .. ..................... . . .. ... ................ . .... . . . . ............. .. . ... . ... . ....... ... . . . .. ........ . .. .. .... .. . . . .. ................................................................. . . ... . . .. . ................................................................................ .. . . ... ... . .. . . .. ........ . . . ... ..... . .. .. .. .............. . . .. ............. .
lowQualScore : 8 88 0 0 0 00000 0 0 99 0 0 88 0 99 4 0 11111111 0 11111111111111111111111111111111111111111111111111111111111111 666666666 77777777 0 77 66666 7 77 99 0 88 00 0 66666 7 0 0 88888888 0 0 0 0 0 0 0 000000000000000 0 66 00 8 00 22 0 0 0 0000 0000000 2 2 0 000 0 0 0 0 33 77777777777 3 7 333 3 0 5555 0 0 88 0 0 0 2 0 0 5 0 55 0 2 0000 0 22222 2 0 0 888 0 5 2 0000 2 88 222222222222222222222 0 2 22 000 2222222222222222 5 5555 0 0 7 0 5555555555555 88 8 888 0 000 5 8888888 888 0 0 0 55 55555555 8 00 22 8888 88 5 2 0 88 88888888888888888888888888888888888888888888888888888888888888888 7 7 555 7 7 88 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777 00 8 0 666 000 6 66 0 0 00 88888888 0 5 7 222 55555 7 22 22 00 77777777777777 0 7 77 7777777777777 0
consensus : AGATCAGCTAAATGGAAATA-ATAA-CG-TC-CGT-----C-AC-TTTTTATT--TT-TTC-A-TAA-A--GCGCA-ATTGCATA--------TATTT-T-T---AA-A--A----T--GT----------------------AT-----------------CTCCTC---------TTTACTCCC----AC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATGNAA--TT--AATGTTCAAA--G--TTAA-T-CAG-TTG-CAAAAGTGACGGAT-GTTACG-TTTGA-CATT-AT-TACCCTTCTGATATT----AAATG-AAGATTTTTT-CTC--GCAACAATATTG-AAAAAAATAATTAAG-ATTGCAGTTTACA-T-A--CATGTACATTATCATCAGTCTAAAACAG-CTCTTA-GACCTTTCTAC-ACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTGTT-ACGGATTT---TACTTGA-TGGCGCCAC-AAGG-ATTTTCAA--AATACTT-TTATGCATATAATTA-TGTAAT-CTGNTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAA--TTGGAATTATC-AATGC-TTTTGTATTATTTAAAGCTC-ATATAATATAAAANAGATCTTT--AAAAATAC-AATTGATA-TAGCC--GCTCCATAAAACAGCCGTTA-TTTTTTTGGACAATTTGAACAGTT-CTCGTGTTTGCGGAAG-TTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAA--TTACACTGAAAACANTTTA-AAAATANTGT-TTT--CTTTTTTAAACTAATGCTC-TC-TTTTTGACATGGAAAG--AAATTAAAATCATTTTTATTT-GAAGGATAAGG---ACC--CTCTTTTTTTA-TCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGCGAGTCATCAAGAACCCA---CA-AAATAG-AAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-G-A--TAG-TAGAAA---GTGTGA-C-TT--TC--AAA--CA--TATT-TN-T-----------TAATAATA-C-AAATTTCAATAGATTAT-AC--AATCCTCTCCAAAAGTGCCAGAA-TCTTTTTCATTCCTGAGAAAG----AGGTAG-AAGTATAAGCT-GCGNG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTC-GTAAT-CTCTGCGTTGACAGGTAAA---TT--------GTGTG-TAGGT
Reference ( gi|1 ) : AGATCAGCTAAATGGAAACA-TTAA-CG-TC-CGT-----C-AC-TTTTTATT--TT-TTC-A-TAA-A--GCGCA-ATTGCATA--------TATTT-T-------------------GT----------------------AT-----------------CTCCTC---------TTTACTCCC----A---TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA--A--TTAA-T-CAG-T-G-CAAAAGTGACGGAT-GTTACA-TT-GA-CATTTAT-TACC--TCGGATAT-----AAATG-AAGATTTTTTTCTC--GCAACAATATT--AAAAAAATAAT-AAG-ATTGCAGTTTACA-T-A--CAT-------ATCATCAGTCTAAAATAG-CTCT-A-GACCTT-CTAC-ACTAGATTTCTATGGTCATTTTT--GGCTAAA----AAT-GT-ATTGTT-ACGGATGT---TACTTGA-TG-CGC-AC-AAGG-ATTT-CAA--AATA-TT-TTATGCATATA-TTA-TGTAAT-CTGGTT-ATAAAATTTT-AATTTTGAAC-T-TAAAGATAAAA--T--GAATTATC-AATGC-TTTTGTATTAT--AAAGCTC-ATATAATATAAAAT---TCTTT--AAAAATAC-AATTGATA-TAGC---GCTCCATAAAACAACCGTTA-TTTTT---GACAATT----------CTCGT-TTTGCGGAAG-T--CATACTAT-GGCAATCTAA-TGA--------TA---AA--TTACATTGAA--CATTTCA-AAAATAGTGC-TT---CTTTTT--AACCAATGCTC-TC-TTT--GACATGGAAAG--AAATTAAAATCATTTAAATTTTAAAGGATAAGT---ACC--CTCTTTTTTTA-TCA--TTG---TTTTGATT----------GGGGGA---GTGAAAGATAGC-ATTCTTCAAAGACACGCGGCATAAATAG-AAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCT-GT---A--TAG-TAG-AA---GTGTGA-C-TT--TC--AA---CA--TATT-TG-T-----------TAA-AAT--T-AAATTC--ATAGATTAT-AC--AATCCTCT-AAAAAGTGCCAGAA-TC-TTTTCATTCCTGAGAAAG----A--TAG-AAGTATAGGCT-GTGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTTGGTAATATTCTGCATTGACAGGTTAA---TT--------GTGTGATAGGT
gi|4 : AGATCAGCTAAATGGAAACAGTTAA-CG-TC--GT-----C-AC-TTTTTATT--TT-TTCTA-TAA-A--GCGCA-ATT-CATA--------TATTT-T-------------------GT----------------------ATTATAATTATTTTGTGTTCTCCCCCCCCTTTTTTTTACTCCC----ACATTACAAGGAAACGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAAGGTT--AATGTTCAAA--G--TAAAAT-GCG-T-GGCAAAAGTGACGGATTGTTACAATT-GAACATT-ATAGACCGGTCTGATAT-----AAATGGAAGAATTTTTTCTCTGGCAACAATATT--AAAAAT-TAAT-AAGGATTGCAGTTTACAGT-AATCAT-------ATCACCAGTCAGAAATAGGCTCT-AAGACCTT-CTACCACTTGATTTCTATGGTCATGTTTAAGGCTAAAGGGGAAT-GT-ATTGTTTACGGATGTGGGTACTTGAATGGCGC-A--AAGG-ATTTTCAAGAAATA-TAATTATGCATATA-TTAATGTAATGCTGGTT-ATAA---TCT-AAATTTGAAC-A--AAAAATAAAAATT--TAATTATC-AATGAATTTTGTATTAT--AAAGCTC-ATATAATATAAAAT---TCTTTAAAAAAATACAAATTGATA-T-GCCTTGCTCCATAAAA
gi|9 : aAGATCAGCTAAATGGAAATA-ATAA-CG-TC-CGT-----C-AC-TTTTTATT--TT-TTC-A-TAA-A--GCGGA-ATTGCATA--------TATTT-TGTATTAAAATAATAATTTAGT----------------------AT-----------------CTCCTC---------TTTACTCCC----AT--TACAAGGAAAAGATAG-TTT-----ACCC-AGT--ATT--TTTCATATAA--TT--AATGTT-AAA--G--TTAaataaattgatatattagcgctccaaaaacagccgttaatttttgacaatttgacaatttcttcgttccggaaagtcacagtat
gi|12 : gggcaaAGATCAGCTAAATGGAAATA-ATAA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATA--GCGGA-ATTGCATA--------TATTT-T-------------------GTAATTTAAAATAATTATTTAGTAAC-----------------CTCCTC---------TTTACTCCC----AT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|11 : ggcaaAGATCAGCTAAATGGAAATA-ATAA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATA--GCGGA-ATTGCATA--------TATTT-T-------------------GTAATTTAAAATAATTATTTAGTAAC-----------------CTCCTC---------TTTACTCCC----AT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|18 : ggcaaAGATCAGCAAAATGGAAATA-ATAA-CG-TC-CGT-----C-AC-TTTTTATTA-AG-TTC-A-AAA-A--GTGCA-ATTGCATA--------TATTT-T-------------------G
gi|19 : caaAGATCAGGTAAATGGAAACA-TTAA-CG-TC-CGT-----C-AC-TTTTTattaaaataactaat
gi|20 : cgggcaaAGATCAGCTAAATGGAAATA-ATA--------CGT-----T-AA-TCTTTA
gi|14 : gggcaaGCTAAATGGAAATA-ATAA-CG-TT-CTTTTTTTC-TT-TTTTTTTT--TC-TTC-A-AAA-A--GCGCA-ACTGCATA--------TATTT-TATATAAAAATAACTGTTTAAT----------------------AT-----------------CTCTTC---------TTTACTCCC----AC--TGCAAGGTTTAGATAG-TTTCATTGACTA-AGT--ATT--TCTT
gi|10 : GCTAAATGGAAATA-ATAA-CG-TCTTTT-----T-TC-TTTTTTTT--TTCTTC-A-AAA-AAGGCGTATATTATATAAAAATAACTGTTT-A-------------------AT----------------------AT-----------------CTCTTCT--------TTTACTCCC----AC--TGCAAGGTTTAGATAG-TTTCATTGACTTAAGT--ATTTCTTTTAAGAAA--TTGGAA-GTTCAAA--G--TTGA-t
gi|13 : AATGGAAATA-ATAAACG-TC-CGT-----CCAC-TTTTTATTATTT-TTC-A-TAA-A--GCGCA-ATTGCATA--------TATTTGTATTAAAATAATAATTATA-GT----------------------AT-----------------CTCCTC---------TTTACTCTCCATAA---TACAA-GAAAAGATAGCTTT-----ACCT-AGT--ATT--TTTa
gi|8 : gcaaaagataggtTTATGAAA--TC--AAAGTTCAAA--G--TTGA-T-CAG-T-G---------ACGGGT-GTTACA-TT-GA-CATT-AT-TACC--TCTGATATTAAATAGATG-AAAATTTGT--CTT--GCAACAATATTGAAAAAAAAAAAT-AAA-ATTGCAGTTTACA-T-G--CAC-------ATCATCCGTCCAAAGCCG-CTCT-A-GACCTT-CTAC-TCTAAATTTTTa
gi|15 : tttcttatcaT--AATGTTCAAATAAGTTTAA-TGCAGAT-G-CAAAAGTGACGGAT-GTTA-A-TT--A-CATT-AT-TACC--TTG-AT-T-----AAATG-AAGATATTTT-CTC--GCA-CAATATT--AAAAAAAAAAA-TAG-ATTGCAGTTTACA-TAA--AAT-------ATCATCAGTg
gi|3 : taTTCAAA--G--TTAA-T-CAG-TTG-CAAA-GTGACG-AT-GTTACG-TTTGA-CATT-AT-TACCCTTCTGATATT----AAATG-AAGATTTTT--CTC--GCAATAATATTG-AAAAAAATAATTAAG-ATTGCAGTTTACA-T-A--CATGTACATTATCATTAGTCTAAAACAG-CTCTTA-GACCTTTCTAC-ACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTGTT-ACGGATTT---TACTTGA-TGGCGCCAC-AAGG-ATTTTCAA--AATACTT-TTATGCATATAATTA-TGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAA--TTGGAATTATC-AATGC-TTTTGTATTATTTAAAGCTC-ATATAAT-TAAAAGAGATCTTT--AAAA--------------TAGCC--ACTTCATAAAACAGCCGTTA-TTTTTTTGGACAATTTGAACAGTT-CTCGTGTTTGCGGAAG-TTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAA--TTACACTGAAAACAATTTA-AAAATATTGT-TTT--CTTTTTTAAACTAATGCTC-TC-TTTTTGACATGGAAA-------TAAAATCATTTTTATTT-GAAGGATAAGG---ACC--CTCT-TTTTTA-TCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGCGAGTCATCAAGAACCCA------AAATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGA--TAGCTAGAAA---GTGTGA-CTTT--TC--AAAACCA--TATTATT-T-----------TAATAATA-C-AAATTTCAATAGATTAT-AC---ATCCTCTCCACAAGTTCCAGAA-TCTTTTTCA-TCCTGAGAAAG----AGGTAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|2 : gtTTCAAA--G--TTAA-T-CAG-TTG-CAAA-GTGACG-AT-GTTACG-TTTGA-CATT-AT-TACCCTTCTGATATT----AAATG-AAGATTTTT--CTC--GCAATAATATTG-AAAAAAATAATTAAG-ATTGCAGTTTACA-T-A--CATGTACATTATCATTAGTCTAAAACAG-CTCTTA-GACCTTTCTAC-ACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTGTT-ACGGATTT---TACTTGA-TGGCGCCAC-AAGG-ATTTTCAA--AATACTT-TTATGCATATAATTA-TGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAA--TTGGAATTATC-AATGC-TTTTGTATTATTTAAAGCTC-ATATAAT-TAAAAGAGATCTTT--AAAA--------------TAGCC--ACTTCATAAAACAGCCGTTA-TTTTTTTGGACAATTTGAACAGTT-CTCGTGTTTGCGGAAG-TTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAA--TTACACTGAAAACAATTTA-AAAATATTGT-TTT--CTTTTTTAAACTAATGCTC-TC-TTTTTGACATGGAAA-------TAAAATCATTTTTATTT-GAAGGATAAGG---ACC--CTCT-TTTTTA-TCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGCGAGTCATCAAGAACCCA------AAATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGA--TAGCTAGAAA---GTGTGA-CTTT--TC--AAAACCA--TATTATT-T-----------TAATAATA-C-AAATTTCAATAGATTAT-AC---ATCCTCTCCACAAGTTCCAGAA-TCTTTTTCA-TCCTGAGAAAG----AGGTAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGGggt
gi|5 : gtGC-ACTAAGGCATTT-TCA--AATA-TT-TTATGCATATA-T-A-TGTAAT-CTGGTT-ATAAA-TTTT-AATT--GAAC----AGAAATAAAA--T--GAATT-TCAAATGC-TTTTGTATTA---AAAGCTCAATATAATAT--AAT---TC-TT--AAAAATAC-AATTGATATTAGC---GCTCCATAAAACAGCCG-TA--TTTT---GACAATT----------C---C-TTTGCGGAAGTT--CACACTAT-GGCAAT-TAA-TGA--------TA---AA--TTATA-TGAA--CATTT-A-AGAATAGTGTATT---CTTTTT----CTAATGCTCAAC-TTT--GACATGGAAAGAAAAATAAGAATCATTTTAATTT--AAAGATAAG----ACCTTCTCTTTTTTTATTCA--ATG---TT---A------------GGGGGG---GGGGGGGGT--C-A----TCAAGAAC------CA-AAATAGAAAAGTGTG--CTTTTCAC-CAAATATTTggt
gi|4 : AAAACAGCCGTTAATTTTT---GACAATTTGACAATTTCTTCGT-TCCG-GAAAG-T--CACAGTAT-tgtaaaattcaaattcaaattatacaactctcaaagtgccgatcttttcatcctgagaaagagtagaaagtataagctagtgcggggtggagacagggagggggttgt
gi|6 : aagatcagctaaatggaaacagttaacgtcgtcactttttattttttctataaagcgcaattcatatattttgtattataattattttgtgttctccccccccttttttttactcccacattacaaggaaacgatagtttacctagtattttttatataaggttaatgttcaaagtaaaatgcgtggcaaaagtgacggattgttacaattgaacattatagaccggtctgatataaatggaagaattttttctctggcaacaatattaaaaattaataaggattgcagtttacagtaatcatatcaccagtcagaaataggctctaagaccttctaccacttgatttctatggtcatgtttaaggctaaaggggaatgtattgtttacggatgtgggtacttgaatggcgcaaaggattttcaagaaatataattatgcatatattaatgtaatgctggttataatctaaatttgaacaaaaaataaaaatttaattatcaatgaattttgtattataaagctcatataatataaaattctttaaaaaaatacaaattgatatgccttgctccataaaaaataaattgatatattagcgctcca-TGA--------TA---AGGGTTACTTTGA---CATTTTTTAAAATAGTGG-TTTTCCTTTTT--AACTAATGCTC-TCCTTT--GACATGGAAAG--AAAT---AATCATTTCTAATTTAAAAGATTAGGGAGACC--CTCTTTTTT-A-TCAAATTG---TTTT-ATT----------GGGGGG---GGGGGGG-------TCCATCAAGAAC-CAAAACATAA---G-AAA-TGTGA--TTTTCAAATCGATGTTTGATCTACCCCAGAAGACGCCTAGT---AGATAGGTAG-AATAAGTGTTATC-TTGTTC--AAA--CA--TTTT-TG-T------------AA-GGTCCT----TTT--ATAAATTATGACTTACTCCTCT-CAAAAGTGCCACAA-TA-TTTTCAT-CCT-AGAAAGGAACA--TAG-AAGTATAAGCT-GTGTGAAG-AGT-GAAGGCGGGGGT-GGGGGGT--GGGGTAGGGTGGT-G-GTCTGTAATCGCCTGCGTTGACA-GTAAA---TT--------
gi|17 : AAATAG-AGAGTGTG-ACTTTTCAA-TCGATAGTTGATCTACCC-AAAAGGC-CCTAGTAG-A--TAA-TAGTAA---GTGTGA-C-TTG-TCA-AA---CA--TATT-TG-cgttggtgtagtgagagctctaa
gi|7 : gaggtgtcatcaagaaccaAGTAG-AAAGTGT-GAC--TTCAA-AACATATTTGATCTgtcttttta
gi|7 : ttggggggtggggggctttgaacattgaaatacaggggcaagaaccaaatagaaagttgatctatcctgaagactctaatagatAA-TAGAAAGTTGATCTATCC-TGAAGAC-TCTAATAG-A--TAG-TAGAAA---GTGTGA-C--T--TCAAAA---CA--TATT-TGATCTTTTATTTTGTAA-AATG-C-AAATTC--ATAGATTAT-AC--AGTCCTCTCAAAAAATGCCAGCATTT-TTTTCA-TCCCGAGAAAA----A---------------CT-G---G-AG--GT--AAGGG-GGGGG-GGGGCATT---TGTGCGATGGCGA-G--AG-----CTTTGCATTCACAGGTAAATCGTT--------GTGTG-TAGGTtttattttgtaaaatgcaaattcatagattatacagtcctctcaaaaaatgccagcatttttttcatcccgagaaaaactggaggtaaggggggggggggcatttgtgcgatggcgagagctttgcattcacaggtaaatcgttgtgtgtaggtgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|5 : ttggggggtggggggctttgaacattgaaatacaggggcaagaaccaAAGAA-CCA-AA---A--TAG--AA-AA---GTGTGC-T-TT--TC--AC---CAAATATT-TT-G-----------TAA-AAT--TCAAATTC--A--AATTAT-AC--AACTCTC----AAAGTGCCG--A-TC-TTTTCAT-CCTGAGAAAG----AG-TAGAAAGTATAAGCTAGTGCG--G-GGTGG-AGAC-AGGG--AGGGGGTTGgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|16 : gcactaaggcattttcaaatattttatgcatatatatgtaatctggttataaattttaattgaacagaaataaaatgaatttcaaatgcttttgtattaaaagctcaatataatataattcttaaaaatacaattgatattagcgctccataaaacagccgtattttgacaattcctttgcggaagttcacactatggcaattaatgataaattatatgaacatttaagaatagtgtattctttttctaatgctcaactttgacatggaaagaaaaataagaatcattttaatttaaagataagaccttctctttttttattcaatgttaggggggggggggggtcatcTATAAGCT-GTGTG-AGGAGTGGAAGGC-GGGGTTGGGGGGTTGGGGGTGGTGTGGTGGTGTT-GTAAT-CTCTGCGTTGACAGG-TAA---TTCATTACAAGTGTG-TAGGTt
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 11 33333333333333333333333333333333333333 1 222222222 111 22222 11 11 1 22 2222 1 555555555 1 2 11 2222 1 1 1 111 1 1 11 1 11 111 2222 11 22 1 2222 11 33333333333333 1 11 1111 222222222 1 1 11 3333333333333 11 1111 11 22222222 1 111 1 1 11 11111 2222222222 3333333333333 444444444 222 1 33 111 1 11 22222222 3333333 1 222 111 11 2 22222 11 11 33333 111 3333333333333 11 1
lowQualScore : 3 3 7 3 99999 3 7 00 4 4 8 8 66 0 4 9999 66 99999999999999999999999999999999999999 0 5 555555555 5 888 3 88 55555 5 33 66 1 11 99 3 888 5 5 6 66 1 666 44 888 6 6 66 7 0000 6 6 5 99 9 77 444444444 8 0 0 8 33 1111 5 5 0 3 777 0 2 5 8 8 0 11 0 3 66 8 11 0 666 0 2222 55 0 8 8 55 8 0 0 9999 11 22222222222222 0 0 11 3 8888 333333333 8 5 5 22 7777777777777 6 88 8 8 1 88 2222 8 44 0 99999999 1 6 6 444 0 0 11 0 0 0 55555 1 1 2222222222 0 1111111111111 222222222 5 222 5 6 1 6 88 111 999 5 5 1 77 5 77 55 00000000 4444444 0 000 6 666 33 2 7 3 00000 6 5 777 88 77 4 66 33 55 11111 444 2 9999999999999 33 0
lowQualScore : . . . . ..... . . .. . . . . .. . . .... .. ...................................... . . ......... . ... . .. ..... . .. .. . .. .. . ... . . . .. . ... .. ... . . .. . .... . . . .. . .. ......... . . . . .. .... . . . . ... . . . . . . .. . . .. . .. . ... . .... .. . . . .. . . . .... .. .............. . . .. . .... ......... . . . .. ............. . .. . . . .. .... . .. . ........ . . . ... . . .. . . . ..... . . .......... . ............. ......... . ... . . . . .. ... ... . . . .. . .. .. ........ ....... . ... . ... .. . . . ..... . . ... .. .. . .. .. .. ..... ... . ............. .. .
lowQualScore : 6 6 3 6 11111 6 3 66 4 4 9 9 11 1 4 4444 11 55555555555555555555555555555555555555 0 0 000000000 0 000 2 22 00000 0 88 99 0 00 22 5 888 0 0 7 77 3 888 22 222 7 7 22 3 8888 7 7 5 22 3 00 000000000 0 6 4 0 88 2222 5 5 0 0 555 0 5 0 0 0 8 00 8 2 88 0 66 8 888 8 4444 66 8 0 0 88 0 6 8 6666 00 00000000000000 8 0 00 2 0000 888888888 8 5 5 55 0000000000000 5 55 8 0 0 88 6666 0 22 8 44444444 4 0 4 000 6 6 00 8 8 8 00000 0 0 0000000000 1 4444444444444 666666666 7 999 7 7 7 7 33 777 666 7 7 4 99 7 99 77 11111111 7777777 0 777 7 555 33 5 3 7 22222 7 7 444 00 33 3 44 66 88 55555 000 5 2222222222222 88 0
consensus : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-A--GCGCA-ATTGCAT----ATA--TTT----TGTA---TAAAA-----TAAT-ATT---G-----TA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CA-TATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATA-TAGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACC--CA----AAATAG-GAAGTGTGGACTTTTC-AATCGATATTTGATCTA-CCCAAAAGAC-CCTAGTA-GATA-G-TAGA--AA-GTGTGA-C-T--T-TCA--AA--CATATT-TT-----TTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCTCCAAAAGTGCCAGAATCTTTTTCA-TCCTGAGAAAG--A-GTAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
Reference ( family-5622 ) : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-A--GCGCA-ATTGCAT----ATA--TTT----T------TAAAA-----T----------G-----TA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATGNAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGNTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATA-TAGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATANTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCACA----AAATAG-AAAGTGTGGACTTTTC-AATCGATATTTGATCTA-CCCAAAAGAC-CCTAGT--GATA-G-TAGA--AA-GTGTGA-C-T--T-TCA--AA--CATATT-TN-----TTAAT------AATACAAATTTCAATAGATTAT-AC--AATCCTCTCCAAAAGTGCCAGAATCTTTTTCATTCCTGAGAAAG--AGGTAG-AAGTATAAGCT-GCGNG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTC-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
gi|1 : AGATCAGCTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-A--GCGCA-ATTGCAT----ATA--TTT---------------------T----------G-----TA-T-CTCCTC---------TTTACTC-CCA---TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---AT-T-AAT-CAG-TGCAAAAGTGACGGA-TGTTACA-TTG-ACATTTAT-TACC--TCGGATA-TAAAT----GAAG-ATTTTTTTCTC--GCAACAATATT-AAAAAAATAA-TAAGATTGCAGTTTACATACA---------TATCATCAGTCTAAAATA-GCTC-TAGACC-TTCTA-CACTAGATTTCTATGGTCATTTTT--GGCTAAA----AA-TG-TATTG-TTACGGATGT---TACTTG-AT-GCG-CAC-AAGG-A-TTTCA--AAATA-TTTTATGCATAT-ATTATGTAAT-CTGG-TTATAAAA-TTTTAATTTTGAAC-T-TAAAGATAAAAT--GAATTATCAA-TG-CTTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTT--AAAAATAC-AATTGATA-TAG-C--GCTCCATAAAACAACCGTTATTTTT---GACAA---------TTCTCGT-TTTGCGGAAG--TCATACTA-TGGCAATCT-AATGA--------TA---AATTACATTG--AACATTTCA-AAAATAGTG--CTTCTTTTT--AACCAATGCTC-TC--TTTGACATGGAAAG--AAATTAAAATCATTTAAATTTTAAAGGATAAGT---ACCCTCTTTTTTTATCA--TTG---TTTTGATT-------------GGGGGAGTGAAAGATAGC----ATTCTT-------------CAAAGACACGCGGCATAAATAG-AAAGTGTGGACTTTTC-AATCGATATTTGATCTA-CCCAAAAGAC-CCT-GT---ATA-G-TAG---AA-GTGTGA-C-T--T-TC---AA--CATATT-TG-----TTAA-------AAT-TAAATTC--ATAGATTAT-AC--AATCCTCT-AAAAAGTGCCAGAATC-TTTTCATTCCTGAGAAAG--A--TAG-AAGTATAGGCT-GTGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTTGGTAATAT-TCTGCATTGACAGGTTA---A---TT----GT--GTGATAGGT
gi|10 : GCTAAATGGAAATAAT-AA-CGT-CTTTT-----T-TCTTTTT-TTT--TTCTTC-AA-AA-AAGGCGTATATTATATAAAAATAACTGT----T------TAA------------------------TA-T-CTCTTCT--------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTTAAGT--ATTTCTTTTAAGAAA--TTGGAA-GTTCAAA---GT-T-GA
gi|11 : AGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATA--GCGGA-ATTGCAT----ATA--TTT----TGTAATTTAAAA-----TAATTATTTA-G-----TAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTAa
gi|12 : ggcaaAGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATA--GCGGA-ATTGCAT----ATA--TTT----TGTAATTTAAAA-----TAATTATTTA-G-----TAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|13 : ggcaaAATGGAAATAAT-AAACGT-C-CGT-----CCACTTTTT-ATTATTT-TTC-AT-AA-A--GCGCA-ATTGCAT----ATA--TTTGTA-T------TAAAA-----TAATAATTATAG-----TA-T-CTCCTC---------TTTACTCTCCATAATACAA-GAAAAGATAGCTTT-----ACCT-AGT--ATT--TTT
gi|14 : gcaaaagataggtGCTAAATGGAAATAAT-AA-CGT-T-CTTTTTTTC-TTTTTTT-TTT--TC-TTC-AA-AA-A--GCGCA-ACTGCAT----ATA--TTT----TATA---TAAAAATAACT----------GTTTAATA-T-CTCTTC---------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTA-AGT--ATT--TCTTa
gi|15 : T--AATGTTCAAATAAGT-TTAATGCAGATGCAAAAGTGACGGA-TGTTA-ATT---ACA-TTAT-TACC---TTG--ATTAAAT----GAAG-A-TATTTTCTC--GC-ACAATATTAAAAAAAAAAAT--AGATTGCAGTTTACATAAA---A-----TATCATCAGTt
gi|16 : taTATAAGCT-GTGTG-AGGAGTGGAAGGC-GGGGTTGGGGGGTTGGGGGTGGTGTGGTGGTGTT-GTAAT-C-TCTGCGTTGACAGGTAATTCA---TTACAAGT--GTG-TAGGT
gi|17 : GTCAT-------------CAAGAACC---A----AAATAG-AGAGTGTG-ACTTTTC-AATCGATAGTTGATCTA-CCCAAAAGGC-CCTAGTA-GATA-A-TAGT--AA-GTGTGA-C-T--TGTCA--AA--CATATT-Tgagagctctgcatt
gi|18 : gaggtAGATCAGCAAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATTA-AG-TTC-AA-AA-A--GTGCA-ATTGCAT----ATA--TTTTGA-T------TAAAA-----T----------ggtcttttta
gi|19 : caaAGATCAGGTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-aactaat
gi|2 : cgggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA--------------TAGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACC--CA----AAATAG-GAAGTGT-GACTTTTC-AATCGATATTGAATCTA-CCC-AAAGAC-CCTAGTCAGATA-GCTAGA--AA-GTGTGA-CTT--T-TCA--AAACCATATTATT-----TTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAGTTCCAGAATCTTTTTCA-TCCTGAGAAAG--AGGTAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|20 : gtAGATCAGCTAAATGGAAATAAT-A--------CGT-----T-AATCTTT-Aggt
gi|3 : gggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA--------------TAGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACC--CA----AAATAG-GAAGTGT-GACTTTTC-AATCGATATTGAATCTA-CCC-AAAGAC-CCTAGTCAGATA-GCTAGA--AA-GTGTGA-CTT--T-TCA--AAACCATATTATT-----TTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAGTTCCAGAATCTTTTTCA-TCCTGAGAAAG--AGGTAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|4 : gtAGATCAGCTAAATGGAAACAGTTAA-CGT-C--GT-----C-ACTTTTT-ATT--TT-TTCTAT-AA-A--GCGCA-ATT-CAT----ATA--TTT----TGTAT--TATAA-----TTATTTT----G-----TG-TTCTCCCCCCCCTTTTTTTTACTC-CCACATTACAAGGAAACGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAAGGTT--AATGTTCAAA---GTAA-AAT-GCGTGGCAAAAGTGACGGATTGTTACAATTGAACA-TTATAGACCGGTCTGATA-TAAATG---GAAGAA-TTTTTTCTCTGGCAACAATATT--AAAAATTAATAAGGATTGCAGTTTACA-----GTAATCA-TATCACCAGTCAGAAATAGGCTCTAAGACC-TTCTACCACTTGATTTCTATGGTCATGTTTAAGGCTAAAGGGGAA-TG-TATTGTTTACGGATGTGGGTACTTGAATGGCG-CA--AAGG-ATTTTCAAGAAATATAATTATGCATATATTAATGTAATGCTGG-TTATAA----TCTAAATTTGAACA---AAAAATAAAAATTTAATTATCAA-TGAATTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTTAAAAAAATACAAATTGATA-T-GCCTTGCTCCATAAAAggt
gi|5 : aCACTAAGGCATTTTCA--AA-TA-TTTTATGCATATA--TATGTAAT-CTGGTT-ATAAA--TTTTAATT--GAACA----GAAATAAAAT--GAATT-TCAAATG-CTTTTGTATTA---AAAGCTCAATATAATATAA------TTCTT--AAAAATAC-AATTGATATTAG-C--GCTCCATAAAACAGCCG-TATTTT----GACAATTC---C----------TTTGCGGAAG-TTCACACTA-TGGCAATT--AATGA--------TA---AATTATA-TG--AACA-TTTA-AGAATAGTG-TATTCTTTTT----CTAATGCTCAAC--TTTGACATGGAAAGAAAAATAAGAATCATTTTAA-TTT-AAAGATAA-G---ACCTTCTCTTTT----------TTTATTCAA--TGTTAGGGGGGGGGGGGG------------------GTCAT-------------CAAGAAC---CA----AAATAGAAAAGTGTG--CTTTTC-ACCAAATATTTaataaattgatatattagcgctccaaaaacagccgttaatttttgacaatttgacaatttcttcgttccggaaagtcacagtat
gi|5 : gA-A-TAGA--AAAGTGTGC-T-T--T-TCACCAA---ATATT-TT-----GTAA-------AATTCAAATT-CAA---ATTAT-AC--AA--CTCTC--AAAGTGCCG--ATCTTTT-CAT-CCTGAGAAAG--A-GTAGAAAGTATAAGCTAGTGCG--G-GGTGG-AGAC-AGGG--AGGGGGTTGtgtaaaattcaaattcaaattatacaactctcaaagtgccgatcttttcatcctgagaaagagtagaaagtataagctagtgcggggtggagacagggagggggttgt
gi|6 : gcactaaggcattttcaaatattttatgcatatatatgtaatctggttataaattttaattgaacagaaataaaatgaatttcaaatgcttttgtattaaaagctcaatataatataattcttaaaaatacaattgatattagcgctccataaaacagccgtattttgacaattcctttgcggaagttcacactatggcaattaatgataaattatatgaacatttaagaatagtgtattctttttctaatgctcaactttgacatggaaagaaaaataagaatcattttaatttaaagataagaccttctctttttttattcaatgttaggggggggggggggtcatcaagaaccaaACATTTTTTAAAATAGTGGTTTTCCTTTTTAA-CTAATGCTC-TCCTTT-GACATGGAAAG--AAAT---AATCATTTCTAATTTAAAAGATTAGGGAGACCCTCTTTTTT-ATCAAATTGTTTT----ATT------------GGGGGGGGGGGGG-----------TCCAT-------------CAAGAA-CCAAA----ACATAA-GAAATGTGA--TTTTCAAATCGATGTTTGATCTACCCCAGAAGACGCCTAGTA-GATAGG-TAGAATAA-GTGTTATC-TTGT-TCA--AA--CAT-TT-TT-----GTAA-------GGTCC---TTTT-ATAAATTATGACTTACTCCTCT-CAAAAGTGCCACAATA-TTTTCA-TCCT-AGAAAGGAACATAG-AAGTATAAGCT-GTGTGAAG-AGT-GAAGGCGGGGGT-GGGGGGT--GGGGTAGGGTGGTGG-TCT-GTAAT-CGCCTGCGTTGACA-GTAA---A---TTC---GTTGGTG-TAGt
gi|7 : tgataagggttactttgGGGGGGTGGGGGGCTTTGAA-CATTGAAATACAGGGGCAAGAACC--------AAATAG-AAAGT----------------------TGATCTA-TCCTGAAGAC-TCTAATA-GATA-G-TAGA--AA-GTGTGA-C-T--T-CAA--AA--CATATT-TGATCTTTTATTTTGTAAAATGCAAATTC--ATAGATTAT-AC--AGTCCTCTCAAAAAATGCCAGCATTTTTTTCA-TCCCGAGAA-----------------AAACT-G---G-AG--GT--AAGGG-GGGGG-GGGGCATT---TGTGCGATGGCGA-G------AG-C-TTTGCATTCACAGGTAA---ATCGTT----GT--GTG-TAGGTtgagagctctaa
gi|8 : ttTTATGAAA--TC--AAAGTTCAAA---GT-T-GAT-CAGT---------GACGGG-TGTTACATT-G-ACA-TTAT-TACC--TCTGATATTAAATAGATGAAA-A-TTTGT-CTT--GCAACAATATTGAAAAAAAAAAATAAAATTGCAGTTTACATGCA---------CATCATCCGTCCAAAGCC-GCTC-TAGACC-TTCTA-CTCTAAATTTTTGgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|9 : tttcttatcaAGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-A--GCGGA-ATTGCAT----ATA--TTTTGTAT------TAAAA-----TAATAATTTA-G-----TA-T-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAGATAG-TTT-----ACCC-AGT--ATT--TTTCATATAA--TT--AATGTT-AAA---GT-T-A
Alignments
lowQualScore : 11 11 22222 555555555 111 222222222 111 22222 11 11 1 22 2222 1 333333 1 1 2 11 2222 1 1 1 111 1 1 11 1 1 111 2222 11 22 1 2222 11 222222222222222222222 2222 2222222 111 22 1 11 3333333333333 11 1111 11 22222222 1 111 1 1 11 11111 2222 3333333333333 22222222 222 1 1 111 1 11 1111111 3333333 222 111 11 3333 2222 11 22222 111 3333333333333 11 1
lowQualScore : 3 3 7 3 99999 3 7 00 4 4 11 8 3 55555 4 555555555 222 555555555 5 888 3 88 55555 5 33 66 1 11 99 3 888 5 5 6 66 1 666 44 888 6 6 77 7 0000 6 6 5 99 9 77 111111 99 3 8 0 0 8 33 1111 5 5 0 1 777 0 2 5 8 8 0 11 0 3 66 8 0 0 666 0 2222 55 0 8 8 55 8 0 0 9999 11 444444444444444444444 0 1111 0 4444444 5 000 8 11 0 22 7777777777777 6 88 8 8 88 2222 8 44 0 99999999 1 6 6 444 0 0 11 0 0 0 55555 1 1 1 2222 1 1111111111111 00000000 5 5 222 5 6 1 6 3 111 999 5 5 1 77 5 77 55 6666666 4444444 1 000 6 666 33 2 7 6 0000 6 5 444 2222 0 1 66 33 0 2 00000 444 2 9999999999999 33 0
lowQualScore : . . . . ..... . . .. . . .. . . ..... . ......... ... ......... . ... . .. ..... . .. .. . .. .. . ... . . . .. . ... .. ... . . .. . .... . . . .. . .. ...... .. . . . . . .. .... . . . . ... . . . . . . .. . . .. . . . ... . .... .. . . . .. . . . .... .. ..................... . .... . ....... . ... . .. . .. ............. . .. . . .. .... . .. . ........ . . . ... . . .. . . . ..... . . . .... . ............. ........ . . ... . . . . . ... ... . . . .. . .. .. ....... ....... . ... . ... .. . . . .... . . ... .... . . .. .. . . ..... ... . ............. .. .
lowQualScore : 6 6 3 6 11111 6 3 66 4 4 11 9 9 33333 4 000000000 888 000000000 0 000 2 22 00000 0 88 99 4 00 22 5 888 0 0 7 77 3 888 22 222 7 7 55 3 8888 7 7 5 22 3 00 888888 22 3 0 6 4 0 88 2222 5 5 0 0 555 0 5 0 0 0 8 00 8 2 88 0 6 8 888 8 4444 66 8 0 0 88 0 6 8 6666 00 888888888888888888888 8 8888 8 4444444 0 888 0 00 6 55 0000000000000 5 55 8 0 88 6666 0 22 8 44444444 4 0 4 000 6 6 00 8 8 8 00000 4 0 0 5555 4 4444444444444 99999999 7 7 999 7 7 7 7 3 777 666 7 7 4 99 7 99 77 7777777 7777777 0 777 7 555 33 5 3 7 2222 7 7 333 1111 7 4 44 66 8 5 22222 000 5 2222222222222 88 0
consensus : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATTTA-GTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATAT-AGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGG-AAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTC-AATCGATATTTGATCTA-CCCAAAAGAC-CCTAGT-AGATA-G-TAGA--AA-GTGTGA-C-T--T-TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCTCCAAAAGTGCCAGAATCTTTTTCA-TCCTGAGAAAGAG--GTAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
Reference ( family-5622 ) : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT---GTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATAT-AGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGG-AAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTC-AATCGATATTTGATCTA-CCCAAAAGAC-CCTAGT-AGATA-G-TAGA--AA-GTGTGA-C-T--T-TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCTCCAAAAGTGCCAGAATCTTTTTCA-TCCTGAGAAAGA---GTAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
gi|1 : AGATCAGCTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T------------------------CTCCTC---------TTTACTC-CCA---TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---AT-T-AAT-CAG-TGCAAAAGTGACGGA-TGTTACA-TTG-ACATTTAT-TACC--TCGGATA-TAAAT----GAAG-ATTTTTTTCTC--GCAACAATATT-AAAAAAATAA-TAAGATTGCAGTTTACA------TA--CAT-ATCATCAGTCTAAAATA-GCTC-TAGACC-TTCTA-CACTAGATTTCTATGGTCATTTTT--GGCTAAA----AA-TG-TATTG-TTACGGATGT---TACTTG-AT-GCG-CAC-AAGG-A-TTTCA--AAATA-TTTTATGCATAT-ATTATGTAAT-CTGG-TTATAAAA-TTTTAATTTTGAAC-T-TAAAGATAAAAT--GAATTATCAA-TG-CTTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTT--AAAAATAC-AATTGATAT-AG-C--GCTCCATAAAACAACCGTTATTTTT---GACAA---------TTCTCGT-TTTGCGG-AAG--TCATACTA-TGGCAATCT-AATGA--------TA---AATTACATTG--AACATTTCA-AAAATAGTG--CTTCTTTTT--AACCAATGCTC-TC--TTTGACATGGAAAG--AAATTAAAATCATTTAAATTTTAAAGGATAAGT---ACCCTCTTTTTTTATCA--TTG---TTTTGATT-------------GGGGGAGTGAAAGATAGC----ATTCTT-------------CAAAGACACGCGGCATAA-ATAG-AAAGTGTGGACTTTTC-AATCGATATTTGATCTA-CCCAAAAGAC-CCT-GT---ATA-G-TAG---AA-GTGTGA-C-T--T-TC---AA--CATATT-T-----GTTAA-------AATT-AAATTC--ATAGATTAT-AC--AATCCTCT-AAAAAGTGCCAGAATC-TTTTCATTCCTGAGAAAGA----TAG-AAGTATAGGCT-GTGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTTGGTAATAT-TCTGCATTGACAGGTTA---A---TT----GT--GTGATAGGT
gi|10 : GCTAAATGGAAATAAT-AA-CGT-CTTTT-----T-TCTTTTT-TTT--TTCTTC-A--AA-AAAG-----GCGTATATTATATA-----AA-AATAACT-GTTTA-ATA-T-CTCTTCT--------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTTAAGT--ATTTCTTTTAAGAAA--TTGGAA-GTTCAAA---GT-T-GA
gi|11 : AGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATTTA-GTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTAa
gi|12 : ggcaaAGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATTTA-GTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|13 : ggcaaAATGGAAATAAT-AAACGT-C-CGT-----CCACTTTTT-ATTATTT-TTC-AT-AA-AGCGCAATTGCATATA-TTTGTAT--T-AA-AATAA-TAATTATAGTA-T-CTCCTC---------TTTACTCTCCATAATACAA-GAAAAGATAGCTTT-----ACCT-AGT--ATT--TTT
gi|14 : gcaaaagataggtGCTAAATGGAAATAAT-AA-CGT-T-CTTTTTTTC-TTTTTTT-TTT--TC-TTC-AA-AA-AGCGCAACTGCATATATTTTATA---TAAA-AATAACT-GTTTA-ATA-T-CTCTTC---------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTA-AGT--ATT--TCTTa
gi|15 : T--AATGTTCAAATAAGT-TTAATGCAGATGCAAAAGTGACGGA-TGTTA-ATT---ACA-TTAT-TACC--T-TG--ATTAAAT----GAAG-A-TATTTTCTC--GC-ACAATATTAAAAAAAAAAAT--AGATTGCAGTTTACATA-----A--AAT-ATCATCAGTt
gi|16 : taTATAAGCT-GTGTG-AGGAGTGGAAGGC-GGGGTTGGGGGGTTGGGGGTGGTGTGGTGGTGTT-GTAAT-C-TCTGCGTTGACAGGTAATTCA---TTACAAGT--GTG-TAGGT
gi|17 : GTCAT-------------CAAGAACC-A------AA-ATAG-AGAGTGTG-ACTTTTC-AATCGATAGTTGATCTA-CCCAAAAGGC-CCTAGT-AGATA-A-TAGT--AA-GTGTGA-C-T--TGTCA--AA--CATATT-T-----gagagctctgcatt
gi|18 : gaggtAGATCAGCAAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATTA-AG-TTC-AA-AA-AGTGCAATTGCATATATTTTGAT---T-AA-AATAA-ggtcttttta
gi|19 : caaAGATCAGGTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ctaat
gi|2 : cgggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA-------------T-AGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGG-AAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTC-AATCGATATTGAATCTA-CCC-AAAGAC-CCTAGTCAGATA-GCTAGA--AA-GTGTGA-CTT--T-TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAGTTCCAGAATCTTTTTCA-TCCTGAGAAAGAG--GTAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|20 : gtAGATCAGCTAAATGGAAATAAT-A--------CGT-----T-AATCTTT-Aggt
gi|3 : gggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA-------------T-AGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGG-AAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTC-AATCGATATTGAATCTA-CCC-AAAGAC-CCTAGTCAGATA-GCTAGA--AA-GTGTGA-CTT--T-TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAGTTCCAGAATCTTTTTCA-TCCTGAGAAAGAG--GTAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|4 : gtAGATCAGCTAAATGGAAACAGTTAA-CGT-C--GT-----C-ACTTTTT-ATT--TT-TTCTAT-AA-AGCGCAATT-CATATATTTTGTA---T-TATAATTA-T-TTT---GTG-TTCTCCCCCCCCTTTTTTTTACTC-CCACATTACAAGGAAACGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAAGGTT--AATGTTCAAA---GTAA-AAT-GCGTGGCAAAAGTGACGGATTGTTACAATTGAACA-TTATAGACCGGTCTGATA-TAAATG---GAAGAA-TTTTTTCTCTGGCAACAATATT--AAAAATTAATAAGGATTGCAGTT----TACA-GTAATCAT-ATCACCAGTCAGAAATAGGCTCTAAGACC-TTCTACCACTTGATTTCTATGGTCATGTTTAAGGCTAAAGGGGAA-TG-TATTGTTTACGGATGTGGGTACTTGAATGGCG-CA--AAGG-ATTTTCAAGAAATATAATTATGCATATATTAATGTAATGCTGG-TTATAA----TCTAAATTTGAACA---AAAAATAAAAATTTAATTATCAA-TGAATTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTTAAAAAAATACAAATTGATAT--GCCTTGCTCCATAAAAggt
gi|4 : aAAAACAGCCGTTAATTTTT--GACAATTTG-ACAATT-TCTTCGTTCCGGAAAG--TCACAGTATaataaattgatatattagcgctccaaaaacagccgttaatttttgacaatttgacaatttcttcgttccggaaagtcacagtat
gi|5 : aagatcagctaaatggaaacagttaacgtcgtcactttttattttttctataaagcgcaattcatatattttgtattataattattttgtgttctccccccccttttttttactcccacattacaaggaaacgatagtttacctagtattttttatataaggttaatgttcaaagtaaaatgcgtggcaaaagtgacggattgttacaattgaacattatagaccggtctgatataaatggaagaattttttctctggcaacaatattaaaaattaataaggattgcagtttacagtaatcatatcaccagtcagaaataggctctaagaccttctaccacttgatttctatggtcatgtttaaggctaaaggggaatgtattgtttacggatgtgggtacttgaatggcgcaaaggattttcaagaaatataattatgcatatattaatgtaatgctggttataatctaaatttgaacaaaaaataaaaatttaattatcaatgaattttgtattataaagctcatataatataaaattctttaaaaaaatacaaattgatatgccttgctccataaaaaataaattgatatattagcgctccaCACTAAGGCATTTTCA--AA-TA-TTTTATGCATATA--TATGTAAT-CTGGTT-ATAAA--TTTTAATT--GAACA----GAAATAAAAT--GAATT-TCAAATG-CTTTTGTATTA---AAAGCTCAATATAATATAA------TTCTT--AAAAATAC-AATTGATATTAGC---GCTCCATAAAACAGCCGT-ATTTT----GACAATTC----------C---TTTGCGG-AAG-TTCACACTA-TGGCAATT--AATGA--------TA---AATTATA-TG--AACA-TTTA-AGAATAGTG-TATTCTTTTT----CTAATGCTCAAC--TTTGACATGGAAAGAAAAATAAGAATCATTTTAA-TTT-AAAGATAA-G---ACCTTCTCTTTT----------TTTATTCAA--TGTTAGGGGGGGGGGGGG------------------GTCAT-------------CAAGAA-CCA------AA-ATAGAAAAGTGTG--CTTTTC-ACCAAATATTT
gi|5 : gA-A-TAGA--AAAGTGTGC-T-T--T-TCACCAA---ATATT-T-----TGTAA-------AATTCAAATT-CAA---ATTAT-AC--AA--CTCTC--AAAGTGCCG--ATCTTTT-CA-TCCTGAGAAAGA---GTAGAAAGTATAAGCTAGTGCG--G-GGTGG-AGAC-AGGG--AGGGGGTTGtgtaaaattcaaattcaaattatacaactctcaaagtgccgatcttttcatcctgagaaagagtagaaagtataagctagtgcggggtggagacagggagggggttgt
gi|6 : gcactaaggcattttcaaatattttatgcatatatatgtaatctggttataaattttaattgaacagaaataaaatgaatttcaaatgcttttgtattaaaagctcaatataatataattcttaaaaatacaattgatattagcgctccataaaacagccgtattttgacaattcctttgcggaagttcacactatggcaattaatgataaattatatgaacatttaagaatagtgtattctttttctaatgctcaactttgacatggaaagaaaaataagaatcattttaatttaaagataagaccttctctttttttattcaatgttaggggggggggggggtcatcaagaaccaaACATTTTTTAAAATAGTGGTTTTCCTTTTTAA-CTAATGCTC-TCCTTT-GACATGGAAAG--AAAT---AATCATTTCTAATTTAAAAGATTAGGGAGACCCTCTTTTTT-ATCAAATTGTTTT----ATT----------------GGGGGGGGGGGGGTC-------CAT-------------CAAGAACCAA------AACATAA-GAAATGTGA--TTTTCAAATCGATGTTTGATCTACCCCAGAAGACGCCTAGT-AGATAGG-TAGAATAA-GTGTTATC-TTGT-TCA--AA--CAT-TT-T-----TGTAA-------GGTCC---TTTT-ATAAATTATGACTTACTCCTCT-CAAAAGTGCCACAATA-TTTTCA-TCCT-AGAAAGGAACATAG-AAGTATAAGCT-GTGTGAAG-AGT-GAAGGCGGGGGT-GGGGGGT--GGGGTAGGGTGGTGG-TCT-GTAAT-CGCCTGCGTTGACA-GTAA---A---TTC---GTTGGTG-TAGt
gi|7 : tgataagggttactttgGGGGGGTGGGGGGCTTTGAA-CATTGAAATACAGGGGCAAGAACC--------AA-ATAG-AAAGT----------------------TGATCTA-TCCTGAAGAC-TCTAAT-AGATA-G-TAGA--AA-GTGTGA-C-T--T-CAA--AA--CATATT-TGATCTTTTATTTTGTAAAATGCAAATTC--ATAGATTAT-AC--AGTCCTCTCAAAAAATGCCAGCATTTTTTTCA-TCCCGAGAAAAA---CTGG-AGGTA----------------------AGGG-GGGGG-GGGGCATTTG---TGCGATGGCGA-G------AG-C-TTTGCATTCACAGGTAA---ATCGTT----GT--GTG-TAGGTtgagagctctaa
gi|8 : ttTTATGAAA--TC--AAAGTTCAAA---GT-T-GAT-CAGT---------GACGGG-TGTTACATT-G-ACA-TTAT-TACC--TCTGATATTAAATAGATGAAA-A-TTTGT-CTT--GCAACAATATTGAAAAAAAAAAATAAAATTGCAGTTTACA------TG--CAC-ATCATCCGTCCAAAGCC-GCTC-TAGACC-TTCTA-CTCTAAATTTTTGgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|9 : tttcttatcaAGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGGAATTGCATATATTTTGTAT--T-AA-AATAA-TAATTTA-GTA-T-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAGATAG-TTT-----ACCC-AGT--ATT--TTTCATATAA--TT--AATGTT-AAA---GT-T-A
Alignments
lowQualScore : 11 11 22222 222 111 222222222 111 22222 11 11 1 22 2222 1 333333 1 1 2 11 2222 1 1 1 111 1 1 11 1 1 111 2222 11 22 1 2222 11 33333333333333 1 11 2222 111111 1 22 1 11 3333333333333 11 1111 11 22222222 1 111 1 1 11 11111 2222 3333333333333 22222222 222 11 1 1 1 11 11 1111111 3333333 11 111 1 22222 11 11 22222 111 3333333333333 11 1
lowQualScore : 3 3 7 3 99999 3 7 00 4 4 11 8 3 55555 4 222 5 222 555555555 5 888 3 88 55555 5 33 66 1 11 99 3 888 5 5 6 66 1 666 44 888 6 6 77 7 0000 6 6 5 99 9 77 111111 99 3 8 0 0 8 33 1111 5 5 0 1 777 0 2 5 8 8 0 11 0 3 66 8 0 0 666 0 2222 55 0 8 8 55 8 0 0 9999 11 22222222222222 0 0 11 0 1111 0 999999 5 0 8 11 0 22 7777777777777 6 88 8 8 88 2222 8 44 0 99999999 1 6 6 444 0 0 11 0 0 0 55555 1 1 1 2222 1 1111111111111 00000000 5 5 222 5 88 6 3 7 1 77 5 5 1 33 77 55 6666666 4444444 1 33 6 666 5 2 7 6 00000 6 5 777 88 77 4 66 33 0 2 00000 444 2 9999999999999 33 0
lowQualScore : . . . . ..... . . .. . . .. . . ..... . ... . ... ......... . ... . .. ..... . .. .. . .. .. . ... . . . .. . ... .. ... . . .. . .... . . . .. . .. ...... .. . . . . . .. .... . . . . ... . . . . . . .. . . .. . . . ... . .... .. . . . .. . . . .... .. .............. . . .. . .... . ...... . . . .. . .. ............. . .. . . .. .... . .. . ........ . . . ... . . .. . . . ..... . . . .... . ............. ........ . . ... . .. . . . . .. . . . .. .. .. ....... ....... . .. . ... . . . . ..... . . ... .. .. . .. .. . . ..... ... . ............. .. .
lowQualScore : 6 6 3 6 11111 6 3 66 4 4 11 9 9 33333 4 999 0 888 000000000 0 000 2 22 00000 0 88 99 4 00 22 5 888 0 0 7 77 3 888 22 222 7 7 55 3 8888 7 7 5 22 3 00 888888 22 3 0 6 4 0 88 2222 5 5 0 0 555 0 5 0 0 0 8 00 8 2 88 0 6 8 888 8 4444 66 8 0 0 88 0 6 8 6666 00 00000000000000 8 0 00 8 8888 8 888888 0 0 0 00 6 55 0000000000000 5 55 8 0 88 6666 0 22 8 44444444 4 0 4 000 6 6 00 8 8 8 00000 4 0 0 5555 4 4444444444444 99999999 7 7 999 7 33 7 3 1 7 99 7 7 4 66 99 77 7777777 7777777 0 55 7 555 0 5 3 7 33333 7 7 999 00 33 3 44 66 8 5 22222 000 5 2222222222222 88 0
consensus : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATA-TAGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGG-AAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCTC-AAAAGTGCCAGAATCTTTTTCA-TCCTGAGAAAG--A-GTAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
Reference ( family-5622 ) : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATA-TAGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGG-AAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCTCCAAAAGTGCCAGAATCTTTTTCA-TCCTGAGAAAG--AGGTAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
gi|1 : AGATCAGCTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T------------------------CTCCTC---------TTTACTC-CCA---TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---AT-T-AAT-CAG-TGCAAAAGTGACGGA-TGTTACA-TTG-ACATTTAT-TACC--TCGGATA-TAAAT----GAAG-ATTTTTTTCTC--GCAACAATATT-AAAAAAATAA-TAAGATTGCAGTTTACA------TA--CAT-ATCATCAGTCTAAAATA-GCTC-TAGACC-TTCTA-CACTAGATTTCTATGGTCATTTTT--GGCTAAA----AA-TG-TATTG-TTACGGATGT---TACTTG-AT-GCG-CAC-AAGG-A-TTTCA--AAATA-TTTTATGCATAT-ATTATGTAAT-CTGG-TTATAAAA-TTTTAATTTTGAAC-T-TAAAGATAAAAT--GAATTATCAA-TG-CTTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTT--AAAAATAC-AATTGATA-TAG-C--GCTCCATAAAACAACCGTTATTTTT---GACAA---------TTCTCGT-TTTGCGG-AAG--TCATACTA-TGGCAATCT-AATGA--------TA---AATTACATTG--AACATTTCA-AAAATAGTG--CTTCTTTTT--AACCAATGCTC-TC--TTTGACATGGAAAG--AAATTAAAATCATTTAAATTTTAAAGGATAAGT---ACCCTCTTTTTTTATCA--TTG---TTTTGATT-------------GGGGGAGTGAAAGATAGC----ATTCTT-------------CAAAGACACGCGGCATAA-ATAG-AAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCT-GT---ATAG-TAG-A--A-GTGTGA-C-TT--TC---AA--CATATT-T-----GTTAA-------AATT-AAATTC--ATAGATTAT-AC--AATCCTCT-AAAAAGTGCCAGAATC-TTTTCATTCCTGAGAAAG--A--TAG-AAGTATAGGCT-GTGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTTGGTAATAT-TCTGCATTGACAGGTTA---A---TT----GT--GTGATAGGT
gi|10 : GCTAAATGGAAATAAT-AA-CGT-CTTTT-----T-TCTTTTT-TTT--TTCTTC-A--AA-AAAG-----GCGTATATTATATA-----AA-AATAACT-GTT-TAATA-T-CTCTTCT--------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTTAAGT--ATTTCTTTTAAGAAA--TTGGAA-GTTCAAA---GT-T-GA
gi|11 : AGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATT-TAGTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTAa
gi|12 : ggcaaAGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATT-TAGTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|13 : ggcaaAATGGAAATAAT-AAACGT-C-CGT-----CCACTTTTT-ATTATTT-TTC-AT-AA-AGCGCAATTGCATATA-TTTGTAT--T-AA-AATAA-TAATTATAGTA-T-CTCCTC---------TTTACTCTCCATAATACAA-GAAAAGATAGCTTT-----ACCT-AGT--ATT--TTT
gi|14 : gcaaaagataggtGCTAAATGGAAATAAT-AA-CGT-T-CTTTTTTTC-TTTTTTT-TTT--TC-TTC-AA-AA-AGCGCAACTGCATATATTTTATA---TAAA-AATAACT-GTT-TAATA-T-CTCTTC---------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTA-AGT--ATT--TCTTa
gi|15 : T--AATGTTCAAATAAGT-TTAATGCAGATGCAAAAGTGACGGA-TGTTA-ATT---ACA-TTAT-TACC--T-TG--ATTAAAT----GAAG-A-TATTTTCTC--GC-ACAATATTAAAAAAAAAAAT--AGATTGCAGTTTACATA-----A--AAT-ATCATCAGTt
gi|16 : taTATAAGCT-GTGTG-AGGAGTGGAAGGC-GGGGTTGGGGGGTTGGGGGTGGTGTGGTGGTGTT-GTAAT-C-TCTGCGTTGACAGGTAATTCA---TTACAAGT--GTG-TAGGT
gi|17 : GTCAT-------------CAAGAACC-A------AA-ATAG-AGAGTGTG-ACTTTTCAA-TCGATAGTTGATCTACCC-AAAAGGC-CCTAGT-AGATAA-TAGTA--A-GTGTGA-C-TTG-TCA--AA--CATATT-T-----gagagctctgcatt
gi|18 : gaggtAGATCAGCAAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATTA-AG-TTC-AA-AA-AGTGCAATTGCATATATTTTGAT---T-AA-AATAA-ggtcttttta
gi|19 : caaAGATCAGGTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ctaat
gi|2 : cgggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA--------------TAGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGG-AAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAGTTCCAGAATCTTTTTCA-TCCTGAGAAAG--AGGTAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|20 : gtAGATCAGCTAAATGGAAATAAT-A--------CGT-----T-AATCTTT-Aggt
gi|3 : gggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA--------------TAGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGG-AAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAGTTCCAGAATCTTTTTCA-TCCTGAGAAAG--AGGTAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|4 : gtAGATCAGCTAAATGGAAACAGTTAA-CGT-C--GT-----C-ACTTTTT-ATT--TT-TTCTAT-AA-AGCGCAATT-CATATATTTTGTA---T-TATAAT---T-ATT-TTGTG-TTCTCCCCCCCCTTTTTTTTACTC-CCACATTACAAGGAAACGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAAGGTT--AATGTTCAAA---GTAA-AAT-GCGTGGCAAAAGTGACGGATTGTTACAATTGAACA-TTATAGACCGGTCTGATA-TAAATG---GAAGAA-TTTTTTCTCTGGCAACAATATT--AAAAATTAATAAGGATTGCAGTT----TACA-GTAATCAT-ATCACCAGTCAGAAATAGGCTCTAAGACC-TTCTACCACTTGATTTCTATGGTCATGTTTAAGGCTAAAGGGGAA-TG-TATTGTTTACGGATGTGGGTACTTGAATGGCG-CA--AAGG-ATTTTCAAGAAATATAATTATGCATATATTAATGTAATGCTGG-TTATAA----TCTAAATTTGAACA---AAAAATAAAAATTTAATTATCAA-TGAATTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTTAAAAAAATACAAATTGATA-T-GCCTTGCTCCATAAAAggt
gi|4 : aAAAACAGCCGTTAATTTTT--GACAATTTG-ACAATT-TCTTCGTTCCGGAAAG--TCACAGTATaataaattgatatattagcgctccaaaaacagccgttaatttttgacaatttgacaatttcttcgttccggaaagtcacagtat
gi|5 : aagatcagctaaatggaaacagttaacgtcgtcactttttattttttctataaagcgcaattcatatattttgtattataattattttgtgttctccccccccttttttttactcccacattacaaggaaacgatagtttacctagtattttttatataaggttaatgttcaaagtaaaatgcgtggcaaaagtgacggattgttacaattgaacattatagaccggtctgatataaatggaagaattttttctctggcaacaatattaaaaattaataaggattgcagtttacagtaatcatatcaccagtcagaaataggctctaagaccttctaccacttgatttctatggtcatgtttaaggctaaaggggaatgtattgtttacggatgtgggtacttgaatggcgcaaaggattttcaagaaatataattatgcatatattaatgtaatgctggttataatctaaatttgaacaaaaaataaaaatttaattatcaatgaattttgtattataaagctcatataatataaaattctttaaaaaaatacaaattgatatgccttgctccataaaaaataaattgatatattagcgctccaCACTAAGGCATTTTCA--AA-TA-TTTTATGCATATA--TATGTAAT-CTGGTT-ATAAA--TTTTAATT--GAACA----GAAATAAAAT--GAATT-TCAAATG-CTTTTGTATTA---AAAGCTCAATATAATATAA------TTCTT--AAAAATAC-AATTGATATTAG-C--GCTCCATAAAACAGCCG-TATTTT----GACAATTC---C----------TTTGCGG-AAG-TTCACACTA-TGGCAATT--AATGA--------TA---AATTATA-TG--AACA-TTTA-AGAATAGTG-TATTCTTTTT----CTAATGCTCAAC--TTTGACATGGAAAGAAAAATAAGAATCATTTTAA-TTT-AAAGATAA-G---ACCTTCTCTTTT----------TTTATTCAA--TGTTAGGGGGGGGGGGGG------------------GTCAT-------------CAAGAA-CCA------AA-ATAGAAAAGTGTG--CTTTTCAC-CAAATATTT
gi|5 : gAA-TAGAA--AAGTGTGC-T-TT--TCACCAA---ATATT-T-----TGTAA-------AATTCAAATT-CAA---ATTAT-AC--AA--CTCTC--AAAGTGCCG--ATCTTTT-CA-TCCTGAGAAAG--A-GTAGAAAGTATAAGCTAGTGCG--G-GGTGG-AGAC-AGGG--AGGGGGTTGtgtaaaattcaaattcaaattatacaactctcaaagtgccgatcttttcatcctgagaaagagtagaaagtataagctagtgcggggtggagacagggagggggttgt
gi|6 : gcactaaggcattttcaaatattttatgcatatatatgtaatctggttataaattttaattgaacagaaataaaatgaatttcaaatgcttttgtattaaaagctcaatataatataattcttaaaaatacaattgatattagcgctccataaaacagccgtattttgacaattcctttgcggaagttcacactatggcaattaatgataaattatatgaacatttaagaatagtgtattctttttctaatgctcaactttgacatggaaagaaaaataagaatcattttaatttaaagataagaccttctctttttttattcaatgttaggggggggggggggtcatcaagaaccaaACATTTTTTAAAATAGTGGTTTTCCTTTTTAA-CTAATGCTC-TCCTTT-GACATGGAAAG--AAAT---AATCATTTCTAATTTAAAAGATTAGGGAGACCCTCTTTTTT-ATCAAATTGTTTT----ATT----------------GGGGGGGGGGGGGTC-------CAT-------------CAAGAACCAA------AACATAA-GAAATGTGA--TTTTCAAATCGATGTTTGATCTACCCCAGAAGACGCCTAGT-AGATAGGTAGAATAA-GTGTTATC-TTGTTCA--AA--CAT-TT-T-----TGTAA-------GGTCC---TTTTA-TAAATTATGACTTACTCCTCTC-AAAAGTGCCACAATA-TTTTCA-TCCT-AGAAAGGAACATAG-AAGTATAAGCT-GTGTGAAG-AGT-GAAGGCGGGGGT-GGGGGGT--GGGGTAGGGTGGTGG-TCT-GTAAT-CGCCTGCGTTGACA-GTAA---A---TTC---GTTGGTG-TAGt
gi|7 : tgataagggttactttgGGGGGGTGGGGGGCTTTGAA-CATTGAAATACAGGGGCAAGAACC--------AA-ATAG-AAAGT----------------------TGATCTATCC-TGAAGAC-TCTAAT-AGATAG-TAGAA--A-GTGTGA-C-TT--CAA--AA--CATATT-TGATCTTTTATTTTGTAAAATGCAAATTC--ATAGATTAT-AC--AGTCCTCTCAAAAAATGCCAGCATTTTTTTCA-TCCCGAGAAAA--A---------------CT-G---G-AG--GT--AAGGG-GGGGG-GGGGCATTTG---TGCGATGGCGA-G------AG-C-TTTGCATTCACAGGTAA---ATCGTT----GT--GTG-TAGGTtgagagctctaa
gi|8 : ttTTATGAAA--TC--AAAGTTCAAA---GT-T-GAT-CAGT---------GACGGG-TGTTACATT-G-ACA-TTAT-TACC--TCTGATATTAAATAGATGAAA-A-TTTGT-CTT--GCAACAATATTGAAAAAAAAAAATAAAATTGCAGTTTACA------TG--CAC-ATCATCCGTCCAAAGCC-GCTC-TAGACC-TTCTA-CTCTAAATTTTTGgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|9 : tttcttatcaAGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGGAATTGCATATATTTTGTAT--T-AA-AATAA-TAATT-TAGTA-T-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAGATAG-TTT-----ACCC-AGT--ATT--TTTCATATAA--TT--AATGTT-AAA---GT-T-A
Alignments
lowQualScore : 11 11 22222 222 111 222222222 111 22222 11 11 1 22 2222 1 333333 1 1 2 11 2222 1 1 1 111 1 1 11 1 1 111 2222 11 22 1 2222 11 33333333333333 1 11 1111 222222222 1 1 11 3333333333333 11 1111 11 22222222 1 111 1 1 11 11111 2222 3333333333333 22222222 222 11 1 1 1 11 11 1111111 3333333 11 111 1 33333 2222 11 22222 111 3333333333333 11 1
lowQualScore : 3 3 7 3 99999 3 7 00 4 4 11 8 3 55555 4 222 5 222 555555555 5 888 3 88 55555 5 33 66 1 11 99 3 888 5 5 6 66 1 666 44 888 6 6 77 7 0000 6 6 5 99 9 77 111111 99 3 8 0 0 8 33 1111 5 5 0 1 777 0 2 5 8 8 0 11 0 3 66 8 0 0 666 0 2222 55 0 8 8 55 8 0 0 9999 11 22222222222222 0 0 11 3 8888 333333333 8 5 5 22 7777777777777 6 88 8 8 88 2222 8 44 0 99999999 1 6 6 444 0 0 11 0 0 0 55555 1 1 1 2222 1 1111111111111 00000000 5 5 222 5 88 6 3 7 1 77 5 5 1 33 77 55 6666666 4444444 1 33 6 666 3 6 2 7 6 00000 6 5 444 2222 0 1 66 33 0 2 00000 444 2 9999999999999 33 0
lowQualScore : . . . . ..... . . .. . . .. . . ..... . ... . ... ......... . ... . .. ..... . .. .. . .. .. . ... . . . .. . ... .. ... . . .. . .... . . . .. . .. ...... .. . . . . . .. .... . . . . ... . . . . . . .. . . .. . . . ... . .... .. . . . .. . . . .... .. .............. . . .. . .... ......... . . . .. ............. . .. . . .. .... . .. . ........ . . . ... . . .. . . . ..... . . . .... . ............. ........ . . ... . .. . . . . .. . . . .. .. .. ....... ....... . .. . ... . . . . . ..... . . ... .... . . .. .. . . ..... ... . ............. .. .
lowQualScore : 6 6 3 6 11111 6 3 66 4 4 11 9 9 33333 4 999 0 888 000000000 0 000 2 22 00000 0 88 99 4 00 22 5 888 0 0 7 77 3 888 22 222 7 7 55 3 8888 7 7 5 22 3 00 888888 22 3 0 6 4 0 88 2222 5 5 0 0 555 0 5 0 0 0 8 00 8 2 88 0 6 8 888 8 4444 66 8 0 0 88 0 6 8 6666 00 00000000000000 8 0 00 2 0000 888888888 8 5 5 55 0000000000000 5 55 8 0 88 6666 0 22 8 44444444 4 0 4 000 6 6 00 8 8 8 00000 4 0 0 5555 4 4444444444444 99999999 7 7 999 7 33 7 3 1 7 99 7 7 4 66 99 77 7777777 7777777 0 55 7 555 3 7 5 3 7 22222 7 7 333 1111 7 4 44 66 8 5 22222 000 5 2222222222222 88 0
consensus : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATA-TAGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-CAAAAG-TGCCAGAATCTTTTTCA-TCCTGAGAAAGA-G---TAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
Reference ( family-5622 ) : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATA-TAGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-CAAAAG-TGCCAGAATCTTTTTCA-TCCTGAGAAAGA-G---TAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
gi|1 : AGATCAGCTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T------------------------CTCCTC---------TTTACTC-CCA---TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---AT-T-AAT-CAG-TGCAAAAGTGACGGA-TGTTACA-TTG-ACATTTAT-TACC--TCGGATA-TAAAT----GAAG-ATTTTTTTCTC--GCAACAATATT-AAAAAAATAA-TAAGATTGCAGTTTACA------TA--CAT-ATCATCAGTCTAAAATA-GCTC-TAGACC-TTCTA-CACTAGATTTCTATGGTCATTTTT--GGCTAAA----AA-TG-TATTG-TTACGGATGT---TACTTG-AT-GCG-CAC-AAGG-A-TTTCA--AAATA-TTTTATGCATAT-ATTATGTAAT-CTGG-TTATAAAA-TTTTAATTTTGAAC-T-TAAAGATAAAAT--GAATTATCAA-TG-CTTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTT--AAAAATAC-AATTGATA-TAG-C--GCTCCATAAAACAACCGTTATTTTT---GACAA---------TTCTCGT-TTTGCGGAAG--TCATACTA-TGGCAATCT-AATGA--------TA---AATTACATTG--AACATTTCA-AAAATAGTG--CTTCTTTTT--AACCAATGCTC-TC--TTTGACATGGAAAG--AAATTAAAATCATTTAAATTTTAAAGGATAAGT---ACCCTCTTTTTTTATCA--TTG---TTTTGATT-------------GGGGGAGTGAAAGATAGC----ATTCTT-------------CAAAGACACGCGGCATAA-ATAG-AAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCT-GT---ATAG-TAG-A--A-GTGTGA-C-TT--TC---AA--CATATT-T-----GTTAA-------AATT-AAATTC--ATAGATTAT-AC--AATCCTCT-AAAAAG-TGCCAGAATC-TTTTCATTCCTGAGAAAGA-----TAG-AAGTATAGGCT-GTGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTTGGTAATAT-TCTGCATTGACAGGTTA---A---TT----GT--GTGATAGGT
gi|10 : GCTAAATGGAAATAAT-AA-CGT-CTTTT-----T-TCTTTTT-TTT--TTCTTC-A--AA-AAAG-----GCGTATATTATATA-----AA-AATAACT-GTT-TAATA-T-CTCTTCT--------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTTAAGT--ATTTCTTTTAAGAAA--TTGGAA-GTTCAAA---GT-T-GA
gi|11 : AGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATT-TAGTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTAa
gi|12 : ggcaaAGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATT-TAGTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|13 : ggcaaAATGGAAATAAT-AAACGT-C-CGT-----CCACTTTTT-ATTATTT-TTC-AT-AA-AGCGCAATTGCATATA-TTTGTAT--T-AA-AATAA-TAATTATAGTA-T-CTCCTC---------TTTACTCTCCATAATACAA-GAAAAGATAGCTTT-----ACCT-AGT--ATT--TTT
gi|14 : gcaaaagataggtGCTAAATGGAAATAAT-AA-CGT-T-CTTTTTTTC-TTTTTTT-TTT--TC-TTC-AA-AA-AGCGCAACTGCATATATTTTATA---TAAA-AATAACT-GTT-TAATA-T-CTCTTC---------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTA-AGT--ATT--TCTTa
gi|15 : T--AATGTTCAAATAAGT-TTAATGCAGATGCAAAAGTGACGGA-TGTTA-ATT---ACA-TTAT-TACC--T-TG--ATTAAAT----GAAG-A-TATTTTCTC--GC-ACAATATTAAAAAAAAAAAT--AGATTGCAGTTTACATA-----A--AAT-ATCATCAGTt
gi|16 : taTATAAGCT-GTGTG-AGGAGTGGAAGGC-GGGGTTGGGGGGTTGGGGGTGGTGTGGTGGTGTT-GTAAT-C-TCTGCGTTGACAGGTAATTCA---TTACAAGT--GTG-TAGGT
gi|17 : GTCAT-------------CAAGAACC-A------AA-ATAG-AGAGTGTG-ACTTTTCAA-TCGATAGTTGATCTACCC-AAAAGGC-CCTAGT-AGATAA-TAGTA--A-GTGTGA-C-TTG-TCA--AA--CATATT-T-----gagagctctgcatt
gi|18 : gaggtAGATCAGCAAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATTA-AG-TTC-AA-AA-AGTGCAATTGCATATATTTTGAT---T-AA-AATAA-ggtcttttta
gi|19 : caaAGATCAGGTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ctaat
gi|2 : cgggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA--------------TAGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAG-TTCCAGAATCTTTTTCA-TCCTGAGAAAGAGG---TAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|20 : gtAGATCAGCTAAATGGAAATAAT-A--------CGT-----T-AATCTTT-Aggt
gi|3 : gggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA--------------TAGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAG-TTCCAGAATCTTTTTCA-TCCTGAGAAAGAGG---TAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|4 : gtAGATCAGCTAAATGGAAACAGTTAA-CGT-C--GT-----C-ACTTTTT-ATT--TT-TTCTAT-AA-AGCGCAATT-CATATATTTTGTA---T-TATAAT---T-ATT-TTGTG-TTCTCCCCCCCCTTTTTTTTACTC-CCACATTACAAGGAAACGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAAGGTT--AATGTTCAAA---GTAA-AAT-GCGTGGCAAAAGTGACGGATTGTTACAATTGAACA-TTATAGACCGGTCTGATA-TAAATG---GAAGAA-TTTTTTCTCTGGCAACAATATT--AAAAATTAATAAGGATTGCAGTT----TACA-GTAATCAT-ATCACCAGTCAGAAATAGGCTCTAAGACC-TTCTACCACTTGATTTCTATGGTCATGTTTAAGGCTAAAGGGGAA-TG-TATTGTTTACGGATGTGGGTACTTGAATGGCG-CA--AAGG-ATTTTCAAGAAATATAATTATGCATATATTAATGTAATGCTGG-TTATAA----TCTAAATTTGAACA---AAAAATAAAAATTTAATTATCAA-TGAATTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTTAAAAAAATACAAATTGATA-T-GCCTTGCTCCATAAAAggt
gi|5 : aCACTAAGGCATTTTCA--AA-TA-TTTTATGCATATA--TATGTAAT-CTGGTT-ATAAA--TTTTAATT--GAACA----GAAATAAAAT--GAATT-TCAAATG-CTTTTGTATTA---AAAGCTCAATATAATATAA------TTCTT--AAAAATAC-AATTGATATTAG-C--GCTCCATAAAACAGCCG-TATTTT----GACAATTC---C----------TTTGCGGAAG-TTCACACTA-TGGCAATT--AATGA--------TA---AATTATA-TG--AACA-TTTA-AGAATAGTG-TATTCTTTTT----CTAATGCTCAAC--TTTGACATGGAAAGAAAAATAAGAATCATTTTAA-TTT-AAAGATAA-G---ACCTTCTCTTTT----------TTTATTCAA--TGTTAGGGGGGGGGGGGG------------------GTCAT-------------CAAGAA-CCA------AA-ATAGAAAAGTGTG--CTTTTCAC-CAAATATTTaataaattgatatattagcgctccaaaaacagccgttaatttttgacaatttgacaatttcttcgttccggaaagtcacagtat
gi|5 : gAA-TAGAA--AAGTGTGC-T-TT--TCACCAA---ATATT-T-----TGTAA-------AATTCAAATT-CAA---ATTAT-AC--AA--CTCT-CAAA-G-TGCCG--ATCTTTT-CA-TCCTGAGAAAGA-G---TAGAAAGTATAAGCTAGTGCG--G-GGTGG-AGAC-AGGG--AGGGGGTTGtgtaaaattcaaattcaaattatacaactctcaaagtgccgatcttttcatcctgagaaagagtagaaagtataagctagtgcggggtggagacagggagggggttgt
gi|6 : gcactaaggcattttcaaatattttatgcatatatatgtaatctggttataaattttaattgaacagaaataaaatgaatttcaaatgcttttgtattaaaagctcaatataatataattcttaaaaatacaattgatattagcgctccataaaacagccgtattttgacaattcctttgcggaagttcacactatggcaattaatgataaattatatgaacatttaagaatagtgtattctttttctaatgctcaactttgacatggaaagaaaaataagaatcattttaatttaaagataagaccttctctttttttattcaatgttaggggggggggggggtcatcaagaaccaaACATTTTTTAAAATAGTGGTTTTCCTTTTTAA-CTAATGCTC-TCCTTT-GACATGGAAAG--AAAT---AATCATTTCTAATTTAAAAGATTAGGGAGACCCTCTTTTTT-ATCAAATTGTTTT----ATT----------------GGGGGGGGGGGGGTC-------CAT-------------CAAGAACCAA------AACATAA-GAAATGTGA--TTTTCAAATCGATGTTTGATCTACCCCAGAAGACGCCTAGT-AGATAGGTAGAATAA-GTGTTATC-TTGTTCA--AA--CAT-TT-T-----TGTAA-------GGTCC---TTTTA-TAAATTATGACTTACTCCTCT-CAAAAG-TGCCACAATATTTT-CA-TCCT-AGAAAGG-AACATAG-AAGTATAAGCT-GTGTGAAG-AGT-GAAGGCGGGGGT-GGGGGGT--GGGGTAGGGTGGTGG-TCT-GTAAT-CGCCTGCGTTGACA-GTAA---A---TTC---GTTGGTG-TAGt
gi|7 : tgataagggttactttgGGGGGGTGGGGGGCTTTGAA-CATTGAAATACAGGGGCAAGAACC--------AA-ATAG-AAAGT----------------------TGATCTATCC-TGAAGAC-TCTAAT-AGATAG-TAGAA--A-GTGTGA-C-TT--CAA--AA--CATATT-TGATCTTTTATTTTGTAAAATGCAAATTC--ATAGATTAT-AC--AGTCCTCT-CAAAAAATGCCAGCATTTTTTTCA-TCCCGAGAAAAA-C---TGG-AGGTA----------------------AGGG-GGGGG-GGGGCATTTG---TGCGATGGCGA-G------AG-C-TTTGCATTCACAGGTAA---ATCGTT----GT--GTG-TAGGTtgagagctctaa
gi|8 : ttTTATGAAA--TC--AAAGTTCAAA---GT-T-GAT-CAGT---------GACGGG-TGTTACATT-G-ACA-TTAT-TACC--TCTGATATTAAATAGATGAAA-A-TTTGT-CTT--GCAACAATATTGAAAAAAAAAAATAAAATTGCAGTTTACA------TG--CAC-ATCATCCGTCCAAAGCC-GCTC-TAGACC-TTCTA-CTCTAAATTTTTGgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|9 : tttcttatcaAGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGGAATTGCATATATTTTGTAT--T-AA-AATAA-TAATT-TAGTA-T-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAGATAG-TTT-----ACCC-AGT--ATT--TTTCATATAA--TT--AATGTT-AAA---GT-T-A
Alignments
lowQualScore : 11 11 22222 222 111 222222222 111 22222 11 11 1 22 2222 1 333333 1 1 2 11 2222 1 1 1 111 1 1 11 1 1 111 2222 11 22 1 2222 11 222222222222222222222 1111 222222222 1 1 11 3333333333333 11 1111 11 22222222 1 111 1 1 11 11111 2222 3333333333333 22222222 222 11 1 1 1 11 11 1111111 3333333 11 111 1 33333 2222 11 22222 111 3333333333333 11 1
lowQualScore : 3 3 7 3 99999 3 7 00 4 4 11 8 3 55555 4 222 5 222 555555555 5 888 3 88 55555 5 33 66 1 11 99 3 888 5 5 6 66 1 666 44 888 6 6 77 7 0000 6 6 5 99 9 77 111111 99 3 8 0 0 8 33 1111 5 5 0 1 777 0 2 5 8 8 0 11 0 3 66 8 0 0 666 0 2222 55 0 8 8 55 8 0 0 9999 11 444444444444444444444 3 8888 777777777 2 8 5 5 22 7777777777777 6 88 8 8 88 2222 8 44 0 99999999 1 6 6 444 0 0 11 0 0 0 55555 1 1 1 2222 1 1111111111111 00000000 5 5 222 5 88 6 3 7 1 77 5 5 1 33 77 55 6666666 4444444 1 33 6 666 3 6 2 7 6 00000 6 5 444 2222 0 1 66 33 0 2 00000 444 2 9999999999999 33 0
lowQualScore : . . . . ..... . . .. . . .. . . ..... . ... . ... ......... . ... . .. ..... . .. .. . .. .. . ... . . . .. . ... .. ... . . .. . .... . . . .. . .. ...... .. . . . . . .. .... . . . . ... . . . . . . .. . . .. . . . ... . .... .. . . . .. . . . .... .. ..................... . .... ......... . . . . .. ............. . .. . . .. .... . .. . ........ . . . ... . . .. . . . ..... . . . .... . ............. ........ . . ... . .. . . . . .. . . . .. .. .. ....... ....... . .. . ... . . . . . ..... . . ... .... . . .. .. . . ..... ... . ............. .. .
lowQualScore : 6 6 3 6 11111 6 3 66 4 4 11 9 9 33333 4 999 0 888 000000000 0 000 2 22 00000 0 88 99 4 00 22 5 888 0 0 7 77 3 888 22 222 7 7 55 3 8888 7 7 5 22 3 00 888888 22 3 0 6 4 0 88 2222 5 5 0 0 555 0 5 0 0 0 8 00 8 2 88 0 6 8 888 8 4444 66 8 0 0 88 0 6 8 6666 00 888888888888888888888 2 0000 222222222 5 8 5 5 55 0000000000000 5 55 8 0 88 6666 0 22 8 44444444 4 0 4 000 6 6 00 8 8 8 00000 4 0 0 5555 4 4444444444444 99999999 7 7 999 7 33 7 3 1 7 99 7 7 4 66 99 77 7777777 7777777 0 55 7 555 3 7 5 3 7 22222 7 7 333 1111 7 4 44 66 8 5 22222 000 5 2222222222222 88 0
consensus : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATAT-AGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-CAAAAG-TGCCAGAATCTTTTTCA-TCCTGAGAAAGA-G---TAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
Reference ( family-5622 ) : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATAT-AGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-CAAAAG-TGCCAGAATCTTTTTCA-TCCTGAGAAAGA-G---TAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
gi|1 : AGATCAGCTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T------------------------CTCCTC---------TTTACTC-CCA---TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---AT-T-AAT-CAG-TGCAAAAGTGACGGA-TGTTACA-TTG-ACATTTAT-TACC--TCGGATA-TAAAT----GAAG-ATTTTTTTCTC--GCAACAATATT-AAAAAAATAA-TAAGATTGCAGTTTACA------TA--CAT-ATCATCAGTCTAAAATA-GCTC-TAGACC-TTCTA-CACTAGATTTCTATGGTCATTTTT--GGCTAAA----AA-TG-TATTG-TTACGGATGT---TACTTG-AT-GCG-CAC-AAGG-A-TTTCA--AAATA-TTTTATGCATAT-ATTATGTAAT-CTGG-TTATAAAA-TTTTAATTTTGAAC-T-TAAAGATAAAAT--GAATTATCAA-TG-CTTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTT--AAAAATAC-AATTGATAT-AG-C--GCTCCATAAAACAACCGTTATTTTT---GACAA---------TTCTCGT-TTTGCGGAAG--TCATACTA-TGGCAATCT-AATGA--------TA---AATTACATTG--AACATTTCA-AAAATAGTG--CTTCTTTTT--AACCAATGCTC-TC--TTTGACATGGAAAG--AAATTAAAATCATTTAAATTTTAAAGGATAAGT---ACCCTCTTTTTTTATCA--TTG---TTTTGATT-------------GGGGGAGTGAAAGATAGC----ATTCTT-------------CAAAGACACGCGGCATAA-ATAG-AAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCT-GT---ATAG-TAG-A--A-GTGTGA-C-TT--TC---AA--CATATT-T-----GTTAA-------AATT-AAATTC--ATAGATTAT-AC--AATCCTCT-AAAAAG-TGCCAGAATC-TTTTCATTCCTGAGAAAGA-----TAG-AAGTATAGGCT-GTGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTTGGTAATAT-TCTGCATTGACAGGTTA---A---TT----GT--GTGATAGGT
gi|10 : GCTAAATGGAAATAAT-AA-CGT-CTTTT-----T-TCTTTTT-TTT--TTCTTC-A--AA-AAAG-----GCGTATATTATATA-----AA-AATAACT-GTT-TAATA-T-CTCTTCT--------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTTAAGT--ATTTCTTTTAAGAAA--TTGGAA-GTTCAAA---GT-T-GA
gi|11 : AGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATT-TAGTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTAa
gi|12 : ggcaaAGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATT-TAGTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|13 : ggcaaAATGGAAATAAT-AAACGT-C-CGT-----CCACTTTTT-ATTATTT-TTC-AT-AA-AGCGCAATTGCATATA-TTTGTAT--T-AA-AATAA-TAATTATAGTA-T-CTCCTC---------TTTACTCTCCATAATACAA-GAAAAGATAGCTTT-----ACCT-AGT--ATT--TTT
gi|14 : gcaaaagataggtGCTAAATGGAAATAAT-AA-CGT-T-CTTTTTTTC-TTTTTTT-TTT--TC-TTC-AA-AA-AGCGCAACTGCATATATTTTATA---TAAA-AATAACT-GTT-TAATA-T-CTCTTC---------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTA-AGT--ATT--TCTTa
gi|15 : T--AATGTTCAAATAAGT-TTAATGCAGATGCAAAAGTGACGGA-TGTTA-ATT---ACA-TTAT-TACC--T-TG--ATTAAAT----GAAG-A-TATTTTCTC--GC-ACAATATTAAAAAAAAAAAT--AGATTGCAGTTTACATA-----A--AAT-ATCATCAGTt
gi|16 : taTATAAGCT-GTGTG-AGGAGTGGAAGGC-GGGGTTGGGGGGTTGGGGGTGGTGTGGTGGTGTT-GTAAT-C-TCTGCGTTGACAGGTAATTCA---TTACAAGT--GTG-TAGGT
gi|17 : GTCAT-------------CAAGAACC-A------AA-ATAG-AGAGTGTG-ACTTTTCAA-TCGATAGTTGATCTACCC-AAAAGGC-CCTAGT-AGATAA-TAGTA--A-GTGTGA-C-TTG-TCA--AA--CATATT-T-----gagagctctgcatt
gi|18 : gaggtAGATCAGCAAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATTA-AG-TTC-AA-AA-AGTGCAATTGCATATATTTTGAT---T-AA-AATAA-ggtcttttta
gi|19 : caaAGATCAGGTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ctaat
gi|2 : cgggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA-------------T-AGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAG-TTCCAGAATCTTTTTCA-TCCTGAGAAAGAGG---TAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|20 : gtAGATCAGCTAAATGGAAATAAT-A--------CGT-----T-AATCTTT-Aggt
gi|3 : gggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA-------------T-AGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAG-TTCCAGAATCTTTTTCA-TCCTGAGAAAGAGG---TAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|4 : gtAGATCAGCTAAATGGAAACAGTTAA-CGT-C--GT-----C-ACTTTTT-ATT--TT-TTCTAT-AA-AGCGCAATT-CATATATTTTGTA---T-TATAAT---T-ATT-TTGTG-TTCTCCCCCCCCTTTTTTTTACTC-CCACATTACAAGGAAACGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAAGGTT--AATGTTCAAA---GTAA-AAT-GCGTGGCAAAAGTGACGGATTGTTACAATTGAACA-TTATAGACCGGTCTGATA-TAAATG---GAAGAA-TTTTTTCTCTGGCAACAATATT--AAAAATTAATAAGGATTGCAGTT----TACA-GTAATCAT-ATCACCAGTCAGAAATAGGCTCTAAGACC-TTCTACCACTTGATTTCTATGGTCATGTTTAAGGCTAAAGGGGAA-TG-TATTGTTTACGGATGTGGGTACTTGAATGGCG-CA--AAGG-ATTTTCAAGAAATATAATTATGCATATATTAATGTAATGCTGG-TTATAA----TCTAAATTTGAACA---AAAAATAAAAATTTAATTATCAA-TGAATTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTTAAAAAAATACAAATTGATAT--GCCTTGCTCCATAAAAggt
gi|5 : aCACTAAGGCATTTTCA--AA-TA-TTTTATGCATATA--TATGTAAT-CTGGTT-ATAAA--TTTTAATT--GAACA----GAAATAAAAT--GAATT-TCAAATG-CTTTTGTATTA---AAAGCTCAATATAATATAA------TTCTT--AAAAATAC-AATTGATATTAGC---GCTCCATAAAACAGCCGT-ATTTT----GACAATTC----------C---TTTGCGGAAG-TTCACACTA-TGGCAATT--AATGA--------TA---AATTATA-TG--AACA-TTTA-AGAATAGTG-TATTCTTTTT----CTAATGCTCAAC--TTTGACATGGAAAGAAAAATAAGAATCATTTTAA-TTT-AAAGATAA-G---ACCTTCTCTTTT----------TTTATTCAA--TGTTAGGGGGGGGGGGGG------------------GTCAT-------------CAAGAA-CCA------AA-ATAGAAAAGTGTG--CTTTTCAC-CAAATATTTaataaattgatatattagcgctccaaaaacagccgttaatttttgacaatttgacaatttcttcgttccggaaagtcacagtat
gi|5 : gAA-TAGAA--AAGTGTGC-T-TT--TCACCAA---ATATT-T-----TGTAA-------AATTCAAATT-CAA---ATTAT-AC--AA--CTCT-CAAA-G-TGCCG--ATCTTTT-CA-TCCTGAGAAAGA-G---TAGAAAGTATAAGCTAGTGCG--G-GGTGG-AGAC-AGGG--AGGGGGTTGtgtaaaattcaaattcaaattatacaactctcaaagtgccgatcttttcatcctgagaaagagtagaaagtataagctagtgcggggtggagacagggagggggttgt
gi|6 : gcactaaggcattttcaaatattttatgcatatatatgtaatctggttataaattttaattgaacagaaataaaatgaatttcaaatgcttttgtattaaaagctcaatataatataattcttaaaaatacaattgatattagcgctccataaaacagccgtattttgacaattcctttgcggaagttcacactatggcaattaatgataaattatatgaacatttaagaatagtgtattctttttctaatgctcaactttgacatggaaagaaaaataagaatcattttaatttaaagataagaccttctctttttttattcaatgttaggggggggggggggtcatcaagaaccaaACATTTTTTAAAATAGTGGTTTTCCTTTTTAA-CTAATGCTC-TCCTTT-GACATGGAAAG--AAAT---AATCATTTCTAATTTAAAAGATTAGGGAGACCCTCTTTTTT-ATCAAATTGTTTT----ATT----------------GGGGGGGGGGGGGTC-------CAT-------------CAAGAACCAA------AACATAA-GAAATGTGA--TTTTCAAATCGATGTTTGATCTACCCCAGAAGACGCCTAGT-AGATAGGTAGAATAA-GTGTTATC-TTGTTCA--AA--CAT-TT-T-----TGTAA-------GGTCC---TTTTA-TAAATTATGACTTACTCCTCT-CAAAAG-TGCCACAATATTTT-CA-TCCT-AGAAAGG-AACATAG-AAGTATAAGCT-GTGTGAAG-AGT-GAAGGCGGGGGT-GGGGGGT--GGGGTAGGGTGGTGG-TCT-GTAAT-CGCCTGCGTTGACA-GTAA---A---TTC---GTTGGTG-TAGt
gi|7 : tgataagggttactttgGGGGGGTGGGGGGCTTTGAA-CATTGAAATACAGGGGCAAGAACC--------AA-ATAG-AAAGT----------------------TGATCTATCC-TGAAGAC-TCTAAT-AGATAG-TAGAA--A-GTGTGA-C-TT--CAA--AA--CATATT-TGATCTTTTATTTTGTAAAATGCAAATTC--ATAGATTAT-AC--AGTCCTCT-CAAAAAATGCCAGCATTTTTTTCA-TCCCGAGAAAAA-C---TGG-AGGTA----------------------AGGG-GGGGG-GGGGCATTTG---TGCGATGGCGA-G------AG-C-TTTGCATTCACAGGTAA---ATCGTT----GT--GTG-TAGGTtgagagctctaa
gi|8 : ttTTATGAAA--TC--AAAGTTCAAA---GT-T-GAT-CAGT---------GACGGG-TGTTACATT-G-ACA-TTAT-TACC--TCTGATATTAAATAGATGAAA-A-TTTGT-CTT--GCAACAATATTGAAAAAAAAAAATAAAATTGCAGTTTACA------TG--CAC-ATCATCCGTCCAAAGCC-GCTC-TAGACC-TTCTA-CTCTAAATTTTTGgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|9 : tttcttatcaAGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGGAATTGCATATATTTTGTAT--T-AA-AATAA-TAATT-TAGTA-T-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAGATAG-TTT-----ACCC-AGT--ATT--TTTCATATAA--TT--AATGTT-AAA---GT-T-A
Alignments
lowQualScore : 11 11 22222 222 111 222222222 111 22222 11 11 1 22 2222 1 333333 1 1 2 11 2222 1 1 1 111 1 1 11 1 1 111 2222 11 22 1 2222 11 222222222222222222222 1111 222222222 1 1 11 3333333333333 11 1111 11 22222222 1 111 1 1 11 11111 2222 3333333333333 22222222 222 11 1 1 1 11 11 1111111 3333333 11 111 1 33333 2222 11 22222 111 3333333333333 11 1
lowQualScore : 3 3 7 3 99999 3 7 00 4 4 11 8 3 55555 4 222 5 222 555555555 5 888 3 88 55555 5 33 66 1 11 99 3 888 5 5 6 66 1 666 44 888 6 6 77 7 0000 6 6 5 99 9 77 111111 99 3 8 0 0 8 33 1111 5 5 0 1 777 0 2 5 8 8 0 11 0 3 66 8 0 0 666 0 2222 55 0 8 8 55 8 0 0 9999 11 444444444444444444444 3 8888 777777777 2 8 5 5 22 7777777777777 6 88 8 8 88 2222 8 44 0 99999999 1 6 6 444 0 0 11 0 0 0 55555 1 1 1 2222 1 1111111111111 00000000 5 5 222 5 88 6 3 7 1 77 5 5 1 33 77 55 6666666 4444444 1 33 6 666 3 6 2 7 6 00000 6 5 444 2222 0 1 66 33 0 2 00000 444 2 9999999999999 33 0
lowQualScore : . . . . ..... . . .. . . .. . . ..... . ... . ... ......... . ... . .. ..... . .. .. . .. .. . ... . . . .. . ... .. ... . . .. . .... . . . .. . .. ...... .. . . . . . .. .... . . . . ... . . . . . . .. . . .. . . . ... . .... .. . . . .. . . . .... .. ..................... . .... ......... . . . . .. ............. . .. . . .. .... . .. . ........ . . . ... . . .. . . . ..... . . . .... . ............. ........ . . ... . .. . . . . .. . . . .. .. .. ....... ....... . .. . ... . . . . . ..... . . ... .... . . .. .. . . ..... ... . ............. .. .
lowQualScore : 6 6 3 6 11111 6 3 66 4 4 11 9 9 33333 4 999 0 888 000000000 0 000 2 22 00000 0 88 99 4 00 22 5 888 0 0 7 77 3 888 22 222 7 7 55 3 8888 7 7 5 22 3 00 888888 22 3 0 6 4 0 88 2222 5 5 0 0 555 0 5 0 0 0 8 00 8 2 88 0 6 8 888 8 4444 66 8 0 0 88 0 6 8 6666 00 888888888888888888888 2 0000 222222222 5 8 5 5 55 0000000000000 5 55 8 0 88 6666 0 22 8 44444444 4 0 4 000 6 6 00 8 8 8 00000 4 0 0 5555 4 4444444444444 99999999 7 7 999 7 33 7 3 1 7 99 7 7 4 66 99 77 7777777 7777777 0 55 7 555 3 7 5 3 7 22222 7 7 333 1111 7 4 44 66 8 5 22222 000 5 2222222222222 88 0
consensus : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATAT-AGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-CAAAAG-TGCCAGAATCTTTTTCA-TCCTGAGAAAGA-G---TAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
Reference ( family-5622 ) : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATAT-AGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-CAAAAG-TGCCAGAATCTTTTTCA-TCCTGAGAAAGA-G---TAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
gi|1 : AGATCAGCTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T------------------------CTCCTC---------TTTACTC-CCA---TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---AT-T-AAT-CAG-TGCAAAAGTGACGGA-TGTTACA-TTG-ACATTTAT-TACC--TCGGATA-TAAAT----GAAG-ATTTTTTTCTC--GCAACAATATT-AAAAAAATAA-TAAGATTGCAGTTTACA------TA--CAT-ATCATCAGTCTAAAATA-GCTC-TAGACC-TTCTA-CACTAGATTTCTATGGTCATTTTT--GGCTAAA----AA-TG-TATTG-TTACGGATGT---TACTTG-AT-GCG-CAC-AAGG-A-TTTCA--AAATA-TTTTATGCATAT-ATTATGTAAT-CTGG-TTATAAAA-TTTTAATTTTGAAC-T-TAAAGATAAAAT--GAATTATCAA-TG-CTTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTT--AAAAATAC-AATTGATAT-AG-C--GCTCCATAAAACAACCGTTATTTTT---GACAA---------TTCTCGT-TTTGCGGAAG--TCATACTA-TGGCAATCT-AATGA--------TA---AATTACATTG--AACATTTCA-AAAATAGTG--CTTCTTTTT--AACCAATGCTC-TC--TTTGACATGGAAAG--AAATTAAAATCATTTAAATTTTAAAGGATAAGT---ACCCTCTTTTTTTATCA--TTG---TTTTGATT-------------GGGGGAGTGAAAGATAGC----ATTCTT-------------CAAAGACACGCGGCATAA-ATAG-AAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCT-GT---ATAG-TAG-A--A-GTGTGA-C-TT--TC---AA--CATATT-T-----GTTAA-------AATT-AAATTC--ATAGATTAT-AC--AATCCTCT-AAAAAG-TGCCAGAATC-TTTTCATTCCTGAGAAAGA-----TAG-AAGTATAGGCT-GTGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTTGGTAATAT-TCTGCATTGACAGGTTA---A---TT----GT--GTGATAGGT
gi|10 : GCTAAATGGAAATAAT-AA-CGT-CTTTT-----T-TCTTTTT-TTT--TTCTTC-A--AA-AAAG-----GCGTATATTATATA-----AA-AATAACT-GTT-TAATA-T-CTCTTCT--------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTTAAGT--ATTTCTTTTAAGAAA--TTGGAA-GTTCAAA---GT-T-GA
gi|11 : AGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATT-TAGTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTAa
gi|12 : ggcaaAGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTT-AA-AATAA-TTATT-TAGTAAC-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|13 : ggcaaAATGGAAATAAT-AAACGT-C-CGT-----CCACTTTTT-ATTATTT-TTC-AT-AA-AGCGCAATTGCATATA-TTTGTAT--T-AA-AATAA-TAATTATAGTA-T-CTCCTC---------TTTACTCTCCATAATACAA-GAAAAGATAGCTTT-----ACCT-AGT--ATT--TTT
gi|14 : gcaaaagataggtGCTAAATGGAAATAAT-AA-CGT-T-CTTTTTTTC-TTTTTTT-TTT--TC-TTC-AA-AA-AGCGCAACTGCATATATTTTATA---TAAA-AATAACT-GTT-TAATA-T-CTCTTC---------TTTACTC-CCAC--TGCAAGGTTTAGATAG-TTTCATTGACTA-AGT--ATT--TCTTa
gi|15 : T--AATGTTCAAATAAGT-TTAATGCAGATGCAAAAGTGACGGA-TGTTA-ATT---ACA-TTAT-TACC--T-TG--ATTAAAT----GAAG-A-TATTTTCTC--GC-ACAATATTAAAAAAAAAAAT--AGATTGCAGTTTACATA-----A--AAT-ATCATCAGTt
gi|16 : taTATAAGCT-GTGTG-AGGAGTGGAAGGC-GGGGTTGGGGGGTTGGGGGTGGTGTGGTGGTGTT-GTAAT-C-TCTGCGTTGACAGGTAATTCA---TTACAAGT--GTG-TAGGT
gi|17 : GTCAT-------------CAAGAACC-A------AA-ATAG-AGAGTGTG-ACTTTTCAA-TCGATAGTTGATCTACCC-AAAAGGC-CCTAGT-AGATAA-TAGTA--A-GTGTGA-C-TTG-TCA--AA--CATATT-T-----gagagctctgcatt
gi|18 : gaggtAGATCAGCAAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATTA-AG-TTC-AA-AA-AGTGCAATTGCATATATTTTGAT---T-AA-AATAA-ggtcttttta
gi|19 : caaAGATCAGGTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ctaat
gi|2 : cgggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA-------------T-AGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAG-TTCCAGAATCTTTTTCA-TCCTGAGAAAGAGG---TAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|20 : gtAGATCAGCTAAATGGAAATAAT-A--------CGT-----T-AATCTTT-Aggt
gi|3 : gggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTT-CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGATCTTT--AAAA-------------T-AGCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAA-------TAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAA-TCGATATTGAATCTACCC--AAAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTAT-----TTTAAT------AATACAAATTTCAATAGATTAT-AC---ATCCTCTCCACAAG-TTCCAGAATCTTTTTCA-TCCTGAGAAAGAGG---TAG-AAGTATAAGCT-GCAGG-GGTAGTGGAAGGG-GGGG
gi|4 : gtAGATCAGCTAAATGGAAACAGTTAA-CGT-C--GT-----C-ACTTTTT-ATT--TT-TTCTAT-AA-AGCGCAATT-CATATATTTTGTA---T-TATAAT---T-ATT-TTGTG-TTCTCCCCCCCCTTTTTTTTACTC-CCACATTACAAGGAAACGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAAGGTT--AATGTTCAAA---GTAA-AAT-GCGTGGCAAAAGTGACGGATTGTTACAATTGAACA-TTATAGACCGGTCTGATA-TAAATG---GAAGAA-TTTTTTCTCTGGCAACAATATT--AAAAATTAATAAGGATTGCAGTT----TACA-GTAATCAT-ATCACCAGTCAGAAATAGGCTCTAAGACC-TTCTACCACTTGATTTCTATGGTCATGTTTAAGGCTAAAGGGGAA-TG-TATTGTTTACGGATGTGGGTACTTGAATGGCG-CA--AAGG-ATTTTCAAGAAATATAATTATGCATATATTAATGTAATGCTGG-TTATAA----TCTAAATTTGAACA---AAAAATAAAAATTTAATTATCAA-TGAATTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---TCTTTAAAAAAATACAAATTGATAT--GCCTTGCTCCATAAAAggt
gi|5 : aCACTAAGGCATTTTCA--AA-TA-TTTTATGCATATA--TATGTAAT-CTGGTT-ATAAA--TTTTAATT--GAACA----GAAATAAAAT--GAATT-TCAAATG-CTTTTGTATTA---AAAGCTCAATATAATATAA------TTCTT--AAAAATAC-AATTGATATTAGC---GCTCCATAAAACAGCCGT-ATTTT----GACAATTC----------C---TTTGCGGAAG-TTCACACTA-TGGCAATT--AATGA--------TA---AATTATA-TG--AACA-TTTA-AGAATAGTG-TATTCTTTTT----CTAATGCTCAAC--TTTGACATGGAAAGAAAAATAAGAATCATTTTAA-TTT-AAAGATAA-G---ACCTTCTCTTTT----------TTTATTCAA--TGTTAGGGGGGGGGGGGG------------------GTCAT-------------CAAGAA-CCA------AA-ATAGAAAAGTGTG--CTTTTCAC-CAAATATTTaataaattgatatattagcgctccaaaaacagccgttaatttttgacaatttgacaatttcttcgttccggaaagtcacagtat
gi|5 : gAA-TAGAA--AAGTGTGC-T-TT--TCACCAA---ATATT-T-----TGTAA-------AATTCAAATT-CAA---ATTAT-AC--AA--CTCT-CAAA-G-TGCCG--ATCTTTT-CA-TCCTGAGAAAGA-G---TAGAAAGTATAAGCTAGTGCG--G-GGTGG-AGAC-AGGG--AGGGGGTTGtgtaaaattcaaattcaaattatacaactctcaaagtgccgatcttttcatcctgagaaagagtagaaagtataagctagtgcggggtggagacagggagggggttgt
gi|6 : gcactaaggcattttcaaatattttatgcatatatatgtaatctggttataaattttaattgaacagaaataaaatgaatttcaaatgcttttgtattaaaagctcaatataatataattcttaaaaatacaattgatattagcgctccataaaacagccgtattttgacaattcctttgcggaagttcacactatggcaattaatgataaattatatgaacatttaagaatagtgtattctttttctaatgctcaactttgacatggaaagaaaaataagaatcattttaatttaaagataagaccttctctttttttattcaatgttaggggggggggggggtcatcaagaaccaaACATTTTTTAAAATAGTGGTTTTCCTTTTTAA-CTAATGCTC-TCCTTT-GACATGGAAAG--AAAT---AATCATTTCTAATTTAAAAGATTAGGGAGACCCTCTTTTTT-ATCAAATTGTTTT----ATT----------------GGGGGGGGGGGGGTC-------CAT-------------CAAGAACCAA------AACATAA-GAAATGTGA--TTTTCAAATCGATGTTTGATCTACCCCAGAAGACGCCTAGT-AGATAGGTAGAATAA-GTGTTATC-TTGTTCA--AA--CAT-TT-T-----TGTAA-------GGTCC---TTTTA-TAAATTATGACTTACTCCTCT-CAAAAG-TGCCACAATATTTT-CA-TCCT-AGAAAGG-AACATAG-AAGTATAAGCT-GTGTGAAG-AGT-GAAGGCGGGGGT-GGGGGGT--GGGGTAGGGTGGTGG-TCT-GTAAT-CGCCTGCGTTGACA-GTAA---A---TTC---GTTGGTG-TAGt
gi|7 : tgataagggttactttgGGGGGGTGGGGGGCTTTGAA-CATTGAAATACAGGGGCAAGAACC--------AA-ATAG-AAAGT----------------------TGATCTATCC-TGAAGAC-TCTAAT-AGATAG-TAGAA--A-GTGTGA-C-TT--CAA--AA--CATATT-TGATCTTTTATTTTGTAAAATGCAAATTC--ATAGATTAT-AC--AGTCCTCT-CAAAAAATGCCAGCATTTTTTTCA-TCCCGAGAAAAA-C---TGG-AGGTA----------------------AGGG-GGGGG-GGGGCATTTG---TGCGATGGCGA-G------AG-C-TTTGCATTCACAGGTAA---ATCGTT----GT--GTG-TAGGTtgagagctctaa
gi|8 : ttTTATGAAA--TC--AAAGTTCAAA---GT-T-GAT-CAGT---------GACGGG-TGTTACATT-G-ACA-TTAT-TACC--TCTGATATTAAATAGATGAAA-A-TTTGT-CTT--GCAACAATATTGAAAAAAAAAAATAAAATTGCAGTTTACA------TG--CAC-ATCATCCGTCCAAAGCC-GCTC-TAGACC-TTCTA-CTCTAAATTTTTGgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|9 : tttcttatcaAGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGGAATTGCATATATTTTGTAT--T-AA-AATAA-TAATT-TAGTA-T-CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAGATAG-TTT-----ACCC-AGT--ATT--TTTCATATAA--TT--AATGTT-AAA---GT-T-A
blockSeqs : T A T T TTTTT C T AT C T TT T G ATTT T CT A AC CCCCTTTTT T TAA A CT CATTG A AA TC A GG GG T TAA A T G AT A GAT AT TGA . A CT T AGAT A . T TG A TT TACATG AT T G T T C AA GGGG T T T T GGG A G C T C AG C AA G T AAT ATAT TG A A TT A A GAGA AA ATACAAATTGATATGCCTT T TTTG TTTGAACAG G G T T TA GGGATGCTTACAT C AA A T GT TAAA A TT GAAAAATA T A G GAG T T AA TGTTG A G G TTTG T TGAAATACAGGGG CA C A GA A CA G C C T TA A T T GT CC AC TGATCT TTTGTAA A TC G TTA C A G T . AACA A A TGT AGG A CG TT G TGTT CG G TTCATTACAA TG .
blockSeqs : . . T . . . T A . . TT T G ATTT . TT . AC T . CAT A T CATTG . AA . T . . T . . . . TT A GA GT TG . . CT T G . . T . G TT TACATG . T . T T . . . T T . T . . G C . . . C AA . T AAT ATAT TG . . TT . A GAGA . ATACAATTGATATTAGC T TTTG TTTGAACAG G G T T TA GGGATGCTTACAT C AA A . T TAAA . TT GAAAT T . G . T T . TGTTG A G G G T . CA . . GA . A . C C A . . . T G . AC AT T A TC . A C . G T . GG . . CAG GGT A C T G TCT C G ATCGTT . .
blockSeqs : . . . . . . . . . . T . C TT . TT . TT . . C A T . . . . A . . A . . . . TT . GG GT TG . . GG T . . . . . G TA TACAG . . . T . . . . . . . G . . G . . . . T AT . T A A TT . . . . . T . TAGCC . . TTC . . . . . TA . . T . T TAA . CT T A . A . . . . TGTTA G G G G T . CA . . GA . T . . G A . . . . . . . AT T T TT . A . . C T . GG . . CAG GGT A G G . G C . ATTC . .
blockSeqs : . . . . . . . . . . A . C TA . TA . T . . T A T . . . . T . . T . . . . TG . A AA G . . . T . . . . . G AT TA . . . . . . . . . . A . . . A . . . . . . . . TAGCC . . T . . . T T . . . . . . . . G T . T . AA . . GA . . . . . A . . . . . . . T . C C . . . . G . . G . . TGC AAG A G .
blockSeqs : . . . . . . . . . . A . C TT . CT . T . . T A T . . . . . . . . . . T . A AT . . . . . . . . . . . T . . . . . . . . A . . G . . . . . A . . . . . . . T . G C . . . . . . . C . . TGT G . C
blockSeqs : . . . . . . . . . . T . C T . TA . T . . C . . . . . . . . . . . . . . . . . A . . . . . . . T . . . . G
blockSeqs : . . . . . . . . . . T . G T . T . T . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : TT*** TT* T** T** TT AT CT TT TACAG* AA A** A*** TG **** TAGCC**************** T* TAA* TT T******* TGTTG CA****** GA* N* T****** TC GG*** GGN*
originalCons : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA---T-AA-AATAA-T-ATT-TAGTA-T-CTCCTC---------TTTACTC-CCAC--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACA-TTAT-TACC--TCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAANAGATCTTT--AAAAATAC-AATTGATAT-AGCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGGAAAG--AAATTAAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGGACTTTTCAA-TCGATATTTGATCTACCC-AAAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-CAAAAG-TGCCAGAATCTTTTTCA-TCCTGAGAAAGA-G---TAG-AAGTATAAGCT-GCGTG-AG-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
finalCons : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTATT---AA-AATAATT-ATT-TAGTAT--CTCCTC---------TTTACTC-CCAT--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACATTTG-ACA-TTAT-TACCCTTCTGATATTAAAT----GAAG-A-TTTTTTCTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACAG-TA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTTTATAAA--TTTTAATTTTGAACA---AAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAA----TCTTT--AAAATAGCC----------------GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTGT-TTTCTTTTTTAA-CTAATGCTC-TCTTTTTGACATGGAAAT-------AAAATCATTTTTA-TTTGAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGTGA-CTTTTCAA-TCGATATTTGATCTACCCN-AAAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-T-----TTTAAT------AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-CAAAAG-TGCCAGAATCTTTTTCA-TCCTGAGAAAGAGG---TAG-AAGTATAAGCT-GCGTGGGN-AGTGGAAGGC-GGGGT-GGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
Alignments
lowQualScore : 1111111111111111111111111111111
lowQualScore : 11 11 11 111 222222222 22222 11 11 1 1 111 22 2222 22 1 222222222222 1 11 2222 1 111 1 11 1 1 222 333 11 222 1 4444 111 0000000000000000000000000000000 1111 333333333 3333333333333 11 222222 22222 11 11 111 1 1 11 11111 2222 3333333333333 22222222 111 1 1 1 11 11 22222 33333333 11 111 111 22222 11 22222 111 3333333333333 11 1
lowQualScore : 3 3 7 3 99999 3 7 00 4 4 11 8 3 1 22 2 5 222 555555555 5 88888 3 88 55555 5 33 66 1 11 99 3 888 5 5 6 1 1 666 666 6 6 66 0000 6 22 99 9 1 777777777777 8 66 0 0 8 33 1111 66 66 0 1 777 0 2 2 8 8 0 11 0 3 5 8 0 88 0 222 0 666 0 55 0 8 8 111 8 0 0 2222 8 444 6666666666666666666666666666666 3 8888 777777777 2 8 66 66 3 3 7777777777777 6 333 8 8 8 66 8 3 66 333333 00000 8 11 1 8 44 444 0 0 11 0 0 0 55555 1 1 1 2222 1 1111111111111 00000000 5 5 5 1 444 6 3 7 1 77 5 5 1 33 77 55 55555 00000000 1 33 6 666 444 2 7 6 00000 6 7 1 0 6 4 66 11 55 00000 444 2 9999999999999 33 0
lowQualScore : . . . . ..... . . .. . . .. . . . .. . . ... ......... . ..... . .. ..... . .. .. . .. .. . ... . . . . . ... ... . . .. .... . .. .. . . ............ . .. . . . .. .... .. .. . . ... . . . . . . .. . . . . . .. . ... . ... . .. . . . ... . . . .... . ... ............................... . .... ......... . . .. .. . . ............. . ... . . . .. . . .. ...... ..... . .. . . .. ... . . .. . . . ..... . . . .... . ............. ........ . . . . ... . . . . .. . . . .. .. .. ..... ........ . .. . ... ... . . . ..... . . . . . . .. .. .. ..... ... . ............. .. .
lowQualScore : 6 6 3 6 11111 6 3 66 4 4 11 9 9 9 22 2 0 888 000000000 0 55555 2 22 00000 0 88 99 4 00 22 5 888 0 0 7 3 3 888 333 7 7 22 8888 7 22 22 3 7 333333333333 0 88 6 8 0 88 2222 55 55 0 0 555 0 5 5 0 0 8 00 8 2 8 0 8 88 8 888 8 000 8 66 8 0 0 666 0 6 8 0000 0 000 0000000000000000000000000000000 2 0000 555555555 5 8 55 55 2 2 0000000000000 5 555 8 0 0 88 0 8 44 000000 00000 0 00 4 0 44 000 6 6 00 8 8 8 00000 4 0 0 5555 4 4444444444444 99999999 7 7 7 4 222 7 3 1 7 99 7 7 4 66 99 77 77777 00000000 0 55 7 555 222 5 3 7 22222 7 6 3 4 6 3 44 33 88 22222 000 5 2222222222222 88 0
consensus : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA--TTAAAATAATTATT-TAGTA-T-CTCCTC---------TTTACTC-CCA--T--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACGTTTG-ACATT-AT-TACC--TCTGATATTAAAT----GAAG-ATTTTTT-CTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTT-TATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAAGAGAT-CTTT---AAAAATACAATTGATA-TA-----------GCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGG------AAA-----TAA-A--ATCATTTTTA-TTT-GAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAATCGATATTTGATCTACCC-A-AAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-----TTTTA------A-AATNCAAATTTCAATAGATTAT-AC--AATCCTCT-C-AAAAGTGCCAGAATCTTTTTCA-TCCTGAGAAAG--A-GTAG-AAGTATAAGCTGCGTGGGGAGTGGAAGGC-GGGG-TGGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
Reference ( family-5622 ) : AGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA--TTAAAATAATTATT-TAGTA-T-CTCCTC---------TTTACTC-CCA--T--TACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---GT-T-AAT-CAGTTGCAAAAGTGACGGA-TGTTACATTTG-ACATT-AT-TACCCTTCTGATATTAAAT----GAAG-ATTTTTT-CTC--GCAACAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACA-GTA--CAT-ATCATCAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATNT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGGTT-TATAAA--TTTTAATTTTGAACA---AAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAATATAAAA----T-CTTT---AAAA-------------TA-----------GCC--GCTCCATAAAACAGCCGTTATTTTTTTGGACAATTCGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACANTTTA-AAAATAGTG-TTTTCTTTTTT-AACTAATGCTC-TCTTTTTGACATGG------AAA-----TAA-A--ATCATTTTTA-TTT-GAAGGATAAGG---ACCCTCTTTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAATCGATATTTGATCTACCCNA-AAGAC-CCTAGT-AGATAG-TAGAA--A-GTGTGA-C-TT--TCA--AA--CATATT-----TTTTA------ATAATNCAAATTTCAATAGATTAT-AC--AATCCTCT-C-AAAAGTGCCAGAATCTTTTTCA-TCCTGAGAAAG--AGGTAG-AAGTATAAGCTGCGTGGGNAGTGGAAGGC-GGGG-TGGGGGGTTGGGGGTGGGGTGGTGG-GTT-GTAAT-C-TCTGCGTTGACAGGTAA---A---TT----GT--GTG-TAGGT
gi|1 : AGATCAGCTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGCAATTGCATATATTTTGTA--T----------------------CTCCTC---------TTTACTC-CCA--T---ACAAGGAAAAGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAA--TT--AATGTTCAAA---AT-T-AAT-CAGT-GCAAAAGTGACGGA-TGTTACATT-G-ACATTTAT-TACC--TCGGATAT-AAAT----GAAG-ATTTTTTTCTC--GCAACAATATT-AAAAAAATAAT-AAGATTGCAGTTTACATACA--------T-ATCATCAGTCTAAAATA-GCTCT-AGACCTT-CTA-CACTAGATTTCTATGGTCATTTTT--GGCTAAA----AAT-GT-ATTG-TTACGGATGT---TACTTG-ATG-CGC-AC-AAGG-ATTT-CA--AAATA-TTTTATGCATATA-TTATGTAAT-CTGGTTATA-AAA--TTTTAATTTTGAACTT--AAAGATAAAAT--GAATTATCAA-TG-CTTTTGTATTAT--AAAGCTCA-TATAATATAAAA----TTCTTT---AAAAATACAATTGATA-TA-----------GC---GCTCCATAAAACAACCGTTATTTTT---GACAATTC---------TCGT-TTTGCGGAAGT--CATACTAT-GGCAATCTAA-TGA--------TA---AATTACATTGAA--CATTTCA-AAAATAGTG-CTTC--TTTTT-AACCAATGCTC-TCTTT--GACATGG------AAAGAAATTAA-A--ATCATTTAAA-TTTTAAAGGATAAGT---ACCCTCTTTTTTTATCA--TTG---TTTTGATT-------------GGGGGAGTGAAAGATAGC----ATTCTT-------------CAAAGACACGCGGCATAA-ATAG-AAAGTGTGGACTTTTCAATCGATATTTGATCTACCCAA-AAGAC-CCT-GT---ATAG-TAG-A--A-GTGTGA-C-TT--TC---AA--CATATT-----TGTTA------A-AATT-AAATTC--ATAGATTAT-AC--AATCCTCT-A-AAAAGTGCCAGAATC-TTTTCATTCCTGAGAAAG--A--TAG-AAGTATAGGCTGTGTGAG-AGTGGAAGGC-GGGG-TGGGGGGTTGGGGGTGGGGTGGTGG-GTTGGTAATAT-TCTGCATTGACAGGTTA---A---TT----GT--GTGATAGGT
gi|10 : GCTAAATGGAAATAAT-AA-CGT-CTTTT-----T-TCTTTTT-TTT--TTCTTC-A--AA-AAAG-----GCGTATA--TTATA--TAAAAATAACTGTT-TAATA-T-CTCTTCT--------TTTACTC-CCA--C--TGCAAGGTTTAGATAG-TTTCATTGACTTAAGT--ATTTCTTTTAAGAAA--TTGGAA-GTTCAAA---GT-T-GA
gi|11 : AGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTTAAAATAATTATT-TAGTAAC-CTCCTC---------TTTACTC-CCA--T--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTAa
gi|12 : ggcaaAGATCAGCTAAATGGAAATAAT-AA-CGTTC-CAT-----C-ACTTTTTTATT--TT-TTT-ATTAATAGCGGAATTGCATATATTTTGTAATTTAAAATAATTATT-TAGTAAC-CTCCTC---------TTTACTC-CCA--T--TACAAGGAAAAG-TAG--TT-----ACCT-AGTAAATT--TTTTA
gi|13 : ggcaaAATGGAAATAAT-AAACGT-C-CGT-----CCACTTTTT-ATTATTT-TTC-AT-AA-AGCGCAATTGCATATA-TTTGTA--TTAAAATAATAATTATAGTA-T-CTCCTC---------TTTACTCTCCA--TAATACAA-GAAAAGATAGCTTT-----ACCT-AGT--ATT--TTT
gi|14 : gcaaaagataggtGCTAAATGGAAATAAT-AA-CGT-T-CTTTTTTTC-TTTTTTT-TTT--TC-TTC-AA-AA-AGCGCAACTGCATATATTTTATA--TAAAAATAACTGTT-TAATA-T-CTCTTC---------TTTACTC-CCA--C--TGCAAGGTTTAGATAG-TTTCATTGACTA-AGT--ATT--TCTTa
gi|15 : T--AATGTTCAAATAAGT-TTAATGCAGATGCAAAAGTGACGGA-TGTTA-ATT---ACATT-AT-TACC---TTG--ATTAAAT----GAAG-ATATTTT-CTC--GC-ACAATATTAAAAAAAAAAAT--AGATTGCAGTTTACATA-----A--AAT-ATCATCAGTt
gi|16 : taTATAAGCTGTGTGAGGAGTGGAAGGC-GGGGTTGGGGGGTTGGGGGTGGTGTGGTGGTGTT-GTAAT-C-TCTGCGTTGACAGGTAATTCA---TTACAAGT--GTG-TAGGT
gi|17 : GTCAT-------------CAAGAACC-A------AA-ATAG-AGAGTGT-GACTTTTCAATCGATAGTTGATCTACCCAA-AAGGC-CCTAGT-AGATAA-TAGTA--A-GTGTGA-C-TTG-TCA--AA--CATATT-----Tgagagctctgcatt
gi|18 : gaggtAGATCAGCAAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATTA-AG-TTC-AA-AA-AGTGCAATTGCATATATTTTG-A--TTAAAATAACTAggtcttttta
gi|19 : caaAGATCAGGTAAATGGAAACATT-AA-CGT-C-CGT-----C-ACTTTTT-at
gi|2 : cgggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACATT-AT-TACCCTTCTGATATTAAAT----GAAG-ATTTTT--CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTT-TATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGAT-CTTT---AAAA-------------TA-----------GCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGG------AAA-----TAA-A--ATCATTTTTA-TTT-GAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAATCGATATTGAATCTACCC-A-AAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTA----TTTTA------ATAATACAAATTTCAATAGATTAT-AC---ATCCTCTCC-ACAAGTTCCAGAATCTTTTTCA-TCCTGAGAAAG--AGGTAG-AAGTATAAGCTGCAGGGGTAGTGGAAGGG-GGGG-
gi|20 : gtAGATCAGCTAAATGGAAATAAT-A--------CGT-----T-AATCTTT-Aggt
gi|3 : gggcaaTTCAAA---GT-T-AAT-CAGTTGCAAA-GTGACG-A-TGTTACGTTTG-ACATT-AT-TACCCTTCTGATATTAAAT----GAAG-ATTTTT--CTC--GCAATAATATTGAAAAAAATAATTAAGATTGCAGTTTACATACATGTA--CATTATCATTAGTCTAAAACA-GCTCTTAGACCTTTCTA-CACTAGATTTTTGTGGTCATTTTT--GGCTAAA----AATTGTTATTG-TTACGGATTT---TACTTG-ATGGCGCCAC-AAGG-ATTTTCA--AAATACTTTTATGCATATAATTATGTAAT-CTGTTT-TATAAAATTTTTAATTTTGAACATATAAAAATAAAATTGGAATTATCAA-TG-CTTTTGTATTATTTAAAGCTCA-TATAAT-TAAAAGAGAT-CTTT---AAAA-------------TA-----------GCC--ACTTCATAAAACAGCCGTTATTTTTTTGGACAATTTGAACAGTTCTCGTGTTTGCGGAAGTTTCACACTATTGGCAATCTAAATGAGGGATGCTTACATAATTACACTGAAAACAATTTA-AAAATATTG-TTTTCTTTTTTAAACTAATGCTC-TCTTTTTGACATGG------AAA-----TAA-A--ATCATTTTTA-TTT-GAAGGATAAGG---ACCCTC-TTTTTTATCA--TTGTTTTTTTAATTTGTTGGGGGGGGGGGAGGGGGGGGGGGGGGC---GAGTCAT-------------CAAGAACCCA------AA-ATAG-GAAGTGT-GACTTTTCAATCGATATTGAATCTACCC-A-AAGAC-CCTAGTCAGATAGCTAGAA--A-GTGTGA-CTTT--TCA--AAACCATATTA----TTTTA------ATAATACAAATTTCAATAGATTAT-AC---ATCCTCTCC-ACAAGTTCCAGAATCTTTTTCA-TCCTGAGAAAG--AGGTAG-AAGTATAAGCTGCAGGGGTAGTGGAAGGG-GGGG-
gi|4 : gtAGATCAGCTAAATGGAAACAGTTAA-CGT-C--GT-----C-ACTTTTT-ATT--TT-TTCTAT-AA-AGCGCAATT-CATATATTTTGTA--TTA---TAATTATT-TTGTG-TTCTCCCCCCCCTTTTTTTTACTC-CCACAT--TACAAGGAAACGATAG-TTT-----ACCT-AGT--ATT--TTTTATATAAGGTT--AATGTTCAAA---GTAA-AAT-GCGTGGCAAAAGTGACGGATTGTTACAATTGAACATT-ATAGACCGGTCTGATA-TAAATG---GAAGAATTTTTT-CTCTGGCAACAATATT--AAAAATTAATAAGGATTGCAGTT----TACA-GTAATCAT-ATCACCAGTCAGAAATAGGCTCTAAGACC-TTCTACCACTTGATTTCTATGGTCATGTTTAAGGCTAAAGGGGAA-TG-TATTGTTTACGGATGTGGGTACTTGAATGGCG-CA--AAGG-ATTTTCAAGAAATATAATTATGCATATATTAATGTAATGCTGG-T-TATAA----TCTAAATTTGAACA---AAAAATAAAAATTTAATTATCAA-TGAATTTTGTATTA--TAAAGCTCA-TATAATATAAAAT---T-CTTTAAAAAAA-------------TACAAATTGATATGCCTTGCTCCATAAAAggt
gi|5 : aCACTAAGGCATTTTCA--AA-TA-TTTTATGCATATA--TATGTAAT-CTGGTT--ATAAA--TTTTAATT--GAACA---GAAA-TAAAAT--GAATT-TCAAATG-CTTTTGTATTA---AAAGCTCAATATAATATAA------T-TCTT---AAAAATACAATTGATATTA-----------GC---GCTCCATAAAACAGCCGT-ATTTT----GACAATTC----------C---TTTGCGGAAG-TTCACACTA-TGGCAATT--AATGA--------TA---AATTATA-TG--AACA-TTTA-AGAATAGTG-TATTCTTTTT----CTAATGCTCAAC--TTTGACATGGAAAGAAAAA-----TAAGA--ATCATTTTAA-TTT--AAAGATAA-G---ACCTTCTCTTTT----------TTTATTCAA--TGTTAGGGGGGGGGGGGG------------------GTCAT-------------CAAGAA-CCA------AA-ATAGAAAAGTGT-G-CTTTTCACCAAATATTTaataaattgatatattagcgctccaaaaacagccgttaatttttgacaatttgacaatttcttcgttccggaaagtcacagtat
gi|5 : gAA-TAGAA--AAGTGTGC-T-TT--TCACCAA---ATATT-----TTGTA------A-AATTCAAATT-CAA---ATTAT-AC--AA--CTCT-C-AAA-GTGCCG--ATCTTTT-CA-TCCTGAGAAAG--A-GTAGAAAGTATAAGCTA-GTGCGGGGTGG-AGAC-AGGG--AGGGGGTTGtgtaaaattcaaattcaaattatacaactctcaaagtgccgatcttttcatcctgagaaagagtagaaagtataagctagtgcggggtggagacagggagggggttgt
gi|6 : gcactaaggcattttcaaatattttatgcatatatatgtaatctggttataaattttaattgaacagaaataaaatgaatttcaaatgcttttgtattaaaagctcaatataatataattcttaaaaatacaattgatattagcgctccataaaacagccgtattttgacaattcctttgcggaagttcacactatggcaattaatgataaattatatgaacatttaagaatagtgtattctttttctaatgctcaactttgacatggaaagaaaaataagaatcattttaatttaaagataagaccttctctttttttattcaatgttaggggggggggggggtcatcaagaaccaaACATTTTTTAAAATAGTGGTTTTCCTTTTT-AACTAATGCTC-TCCTTT-GACATGG------AAA-----GAA-ATAATCATTTCTAATTT-AAAAGATTAGGGAGACCCTCTTTTTT-ATCAAATTGTTTT----ATT----------------GGGGGGGGGGGGGTC-------CAT-------------CAAGAACCAA------AACATAA-GAAATGT-GATTTTCAAATCGATGTTTGATCTACCCCAGAAGACGCCTAGT-AGATAGGTAGAATAA-GTGTTATC-TTGTTCA--AA--CAT-TT-----TTGTA------A-GGTCC---TTTTA-TAAATTATGACTTACTCCTCT-C-AAAAGTGCCACAATA-TTTTCA-TCCT-AGAAAGGAACATAG-AAGTATAAGCTGTGTGAAGAGT-GAAGGCGGGGG-TGGGGGGT--GGGGTAGGGTGGTGG-TCT-GTAAT-CGCCTGCGTTGACA-GTAA---A---TTC---GTTGGTG-TAGt
gi|7 : tgataagggttactttgGGGGGGTGGGGGGCTTTGAA-CATTGAAATACAGGGGCAAGAACC--------AA-ATAG-AAAGT---------------------TGATCTATCCTG-AAGAC-TCTAAT-AGATAG-TAGAA--A-GTGTGA-C-TT--CAA--AA--CATATTTGATCTTTTATTTTGTAAAATGCAAATTC--ATAGATTAT-AC--AGTCCTCT-CAAAAAATGCCAGCATTTTTTTCA-TCCCGAGAA-----------------AAACT-----GGAGGT--AAGGG-GGGG-GGGGGCATT---TGTGCGATGGCGA-G------AG-C-TTTGCATTCACAGGTAA---ATCGTT----GT--GTG-TAGGTtgagagctctaa
gi|8 : ttTTATGAAA--TC--AAAGTTCAAA---GT-T-GAT-CAGT---------GACGGG-TGTTACATT-G-ACATT-AT-TACC--TCTGATATTAAATAGATGAAA-ATTTGT--CTT--GCAACAATATTGAAAAAAAAAAATAAAATTGCAGTTTACA------TG--CAC-ATCATCCGTCCAAAGCC-GCTC-TAGACC-TTCTA-CTCTAAATTTTTGgagagcttcgcaaccacaggcacatcgttgtgtgtaggtg
gi|9 : tttcttatcaAGATCAGCTAAATGGAAATAAT-AA-CGT-C-CGT-----C-ACTTTTT-ATT--TT-TTC-AT-AA-AGCGGAATTGCATATATTTTGTA--TTAAAATAATAATT-TAGTA-T-CTCCTC---------TTTACTC-CCA--T--TACAAGGAAAAGATAG-TTT-----ACCC-AGT--ATT--TTTCATATAA--TT--AATGTT-AAA---GT-T-A