lowQualScore : 1111111111111111111111111
lowQualScore : 444 1 3333 1 1 111 1 555 1 1 11 1111111 22 1 333333333 222 1 11 1 0000000000000000000000000 1 11 11 11 22 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222222 1
lowQualScore : 666 0 2222 5 5 777 5 6 888 0 6 66 99 8 8 6666666 77 1 444444444 2 8 1 6 77 6 0 333 3 22 8 7 11 0 3 11 0 8888888888888888888888888 0 33 33 22 9 3 2 3 99 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 2 1111111111 0 4 99
lowQualScore : ... . .... . . ... . . ... . . .. .. . . ....... .. . ......... . . . . .. . . ... . .. . . .. . . .. . ......................... . .. .. .. . . . . .. . ................................................................................................................................ . . .......... . . ..
lowQualScore : 000 5 0000 5 0 555 5 0 000 0 4 44 22 0 0 2222222 44 2 555555555 5 2 7 7 33 0 2 777 2 00 0 0 33 6 2 88 8 2222222222222222222222222 0 88 88 00 0 2 0 2 00 2 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 0 3333333333 7 3 22
consensus : NNATTAT-TACAANCTCGTATTAAGGATAAAGAAGATGGGTCTTNNNTTGTAAATGCTA--AAAGACTTGAATATCTTACCAGAC-AATCTCAAGGT-GG-AAAGGGAT--AAAG-CAAANTTTAAGAGN-TCTGT-GAAACACACCTTTTTG-ATGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTCGAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTNAAATCCTTGTATTTTTCATGTNAATATAAACC----T-----GTGAT---------TA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA---TT------------------AGA-TA-A-A-TCACTGTT---A--------AT-TATTTGCACT-T-CAAT-AACAAC--TAACA-AAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTTTAT-CCTT-AGGATATACTGAACATATTTT--ACTATAGTGCT
Reference ( gi|2 ) : AGATTATGTACAACCTCGTATTAAGGGTAAAGAAGATGGATCTTCTTTTGTAAATGCCATCAAAGACTGGAATAATTTACCAGAA-AATATCAAGGT-GG-AAA-GGAG--AAAGATAAATTTTAAGAAA-TCTGTAAAAACACATCTTTTTG-ATGAAGCAAAAACAAGAAGTTTACAAACTTATCTTTAAGAGACAATTC-TAAAATACTGTTCATTTTACAATTGTTAAATCCTTGTATTTTTCATGTCAATATAAACC----TCATATGTGAT---------TA-TTGGTATA--CAA--AGTCTTTCCAAAGTTCTGATCTCATC-TTGTTA---TT------------------AGA-TA-G-A-TCACCGTT---A--------AC-TATTTGCACT-T-CAATGAACAGC--TAACA-AAGGACC--AT-GGAA------A---TAAGCCT---AGCTTAATGGGTCTAT-CTTTCAGGATATACTGAACATATTTT--ACTATAGTGCT
gi|12 : ATTAT-TACAAACTCGTATTAAGGATAAAGAAGATGGATCTTTTTTTGTAAATG
gi|1 : atttatattataatagtatagcaagtcatcataTTAT---CAATCTCGTATTAAAG----AGAAG-TGGGT-TTAGATTGTAA-TGCTA---AAGACATGCATAATTAAC---AG-AATA--AGGGTTGG-AAA-GGGG--CAAGATTAATTTTAAGAAA----ATAAAAA---ATCTTTCTGAATG----GAAAGC---GAGCTT--AAAC-TATTTTAAAGAGA-AATTCATAAAATTCGGTTC-TTTCACAATAG-TAAAT-CTTA-ATTTTCCATGTTCATATAAA-------------TGAT---------TATTTGGTATATGTAATCAGTC-TTGAAAAGTTTGGATCTCAT--TTGTTAATTTT------------------AGA-AA-GAA-TCA-GGTT------------AT-TATTTGC-CTATACAAT--ACAAC--TAAAG-AAGGTTC--TT-GGAATAGCTTA---TAAGGCT---A--TTAATGGGTTTAT-CTT--AGGATCTA--GA--ATATTT
gi|13 : atttttcatatgtgtaatgttgtctaattgtaattgtctaagtattggcttacgagatagaaatatggtgtcaggtgaaaatatagtcatgttatataggaagtaatgctgattatttttgtatagctagaacgtttagaacgtaaagtgtgacgttgttatctgcgctattagtgtttttgttatgtttcatcgtggatgtagggttcgttaagacactaaagtcgaaataaagtagtaagatttgttttagatttggcagagagtgttgacaacgttacttcaaaagtatatgttgtgttagtgaacgggtaaacattagattgaatcatgttacatattgttattggatgcctctattatatgtgtatattttacttttgtatataaatcgtagttataatatagagaagtattttatgtaagcaatataagacagtgattaattcgtaagtggaatagaatacatgacaagagttaggggtaaatcataatttgAAAGACTGGAATATTTTACCAAAC-AATGTAAAGAT-GG-AAA-TGTGGCAAAG-TAAATTTTAAGAGT-TCTGT-ATAACA---CTTTTTA-A
gi|8 : aAGACTTGAATATCTTACCAGGACAATCTCAAGGT-GGAAAA-GGAT--AAAGCAAAA--TTAAGAGCTTCTG--GAAACACACC--TTTG-ATGAAA-AAAAGCAAGAAG
gi|9 : GACTTGAATATCTTACCAGAC-AATCTCAAGGT-GG-AAAGGGAT--AAAG-CAAAATTTAAGAGT-TCT-T-GAAACACACCTTTTTG-ATGAAACAAAAGCAA
gi|10 : GACTTGAATA-CTTACCAGAC-AATCTCAAGGT-GG-AAAGGGAT--AAAG-CAAAATTTAAGAGT-TCT-T-GAAACACA-CCTTTTG-ATGAAACAAAAGCAA
gi|6 : GAGA-TCTGTAAAAACACATCTTTTTA-ATGAAACAAAGGCAAAAAGTTTGCAAACTTATCTTCAAGAGACAATTC-TAAATTTCTGTTCATTTTACAATTGTAAAATCCTT
gi|3 : cAAGCAAAAGGAAGAAGT--GCAATCTTATCTTTGAGGGACAATCG-TAAAATTCTATTCATCATACAATTG-TAAGTCCTTG---TTTTTATGCGAATAT---CCATTTTTTTATGTCATGTCAATCACTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATCTTTGTTA---TTTAGAATACTTGTTGTTTAAAA-TA-GAA-TCACTATC---ATCATTTGCAC-TA--TGCACT-T-CAAT-AACAAC--TAACA-
gi|4 : TTATCTTTCAGAGACAATTC-TAAAATTCTATTCATTTTAC-ATTGTTAAATCCTTGTATTTTTCATGGAAA---AAAC-----------ATGAT---------TA-TTGGTATA--CAA--AGT-TTGCC-AAGATCTGA--TCATT-T--TTA---TT------------------AGA-TA-A-AGTCACTGTT---A-----------T-TTTGCACC-T-CA-----------TAACACNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNCT-AACATATTTT--ACTATAGTG
gi|15 : ACAATTC-TAAAATTCTGTTCATTTTACAATTATAAAATCCTTGTATTTTTCATGTCACTATAAACC----gc
gi|5 : CTGTTCATTTTACAATTGTAAAATCCTTGTATTTTTCATATCATTATAAACC----T------TGCT---------TA-TTGGTATA--CAA--AGTGTTGCCAAAGTTTTGATCTCAT--TTGTTAT--TT------------------AGA-TATA-A-TCACTGTT------------AT-TATTTGCACT-T-CAAT-AACAACNNNNNNN-NNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNNNNN-NNNNNNNNNNNNACTGAACATA-TTT--ACTATAGTGCa
gi|7 : tA---TT------------------GGAATA-A-AGTCACTGTT---A--------A--TATTTGCACC-T-CAAT-------------------------T-GGAA------A---TAAGCCTTTAGGCTTTATGGGT-TAG-CCTT-ACGATA--CTGAACATATTTT--ACTATAGTGTT
gi|16 : tata-A-TCATCATTTTCA--------ATATATATGCACT-T-CAAT-AACAAC--TAACA-AAc
gi|11 : agaatacaatcatcACAAC--TAACA-AAGGACCCCAT-TGAA------A-------------A---TAATGGGT-TAC-CCTT-AGGATA--CCGAACACATTTT--ACTATAGTGCT
gi|14 : ACC--ATTGGAG------AATATAAGCCTTTAGGCTTA-TGG-TTTATACCTTTAGGATATACT--ACATATTTTTAACTATAGTGCTccatataaccattaa
gi|19 : aggacACTGAACATATTTT--ACTATCGTGCT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TTTGTTATTTAAATATAATCACTGTTGCTATGTTTTGACCTTCAATAACAAC
Unaligned ( gi|18 ): AATCACTGTCATCATTTGCACTAAGTACTTCATTAATAATTAAC
Alignments
lowQualScore : 1 1 11 1 1 1 5555555555555555555555555 11 11 22 111 555555555555555555 2 1 2222222 1111111 33333333333333333333333 11 1111
lowQualScore : 3 3 1 7 7 0 6 333 7 88 3 1 6 2 6 99 6 6 1 66 6 1 4 0 5 5 4 0 666 0 99 6 2 7 1 9999999999999999999999999 8 11 11 5 0 0 33 000 333333333333333333 5 2 0 1111111 6666666 0 5 5 5 1 888 5 22222222222222222222222 0 33 11 5 6666 2 77
lowQualScore : . . . . . . . ... . .. . . . . . .. . . . .. . . . . . . . . ... . .. . . . . ......................... . .. .. . . . .. ... .................. . . . ....... ....... . . . . . ... . ....................... . .. .. . .... . ..
lowQualScore : 3 3 0 3 3 7 7 000 3 33 2 7 7 5 7 22 7 7 0 77 6 4 3 4 0 7 3 8 888 8 22 7 1 3 0 4444444444444444444444444 0 00 00 0 8 6 33 000 666666666666666666 7 9 0 2222222 2222222 1 0 0 0 0 999 7 33333333333333333333333 9 66 99 7 6666 5 99
consensus : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGTATTTTTCATGTCAATATAAACC---------TGTGAT---------TATT-GGTATAC--AA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA---TTT-----------------AGA-TA-AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
Reference ( family-550 ) : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGGTCTTNNNTTGTAAATGCTA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTCGAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTNAAATCCTTGTATTTTTCATGTNAATATAAACC---------TGTGAT---------TATT-GGTATAC--AA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA---TT------------------AGA-TA-AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TATCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
gi|1 : TTGT-TATCAATCTCGTATTAAAGA----GAAG-TGGGT-TTAGATTGTAA-TGCTA--AA-GACATGCATA-ATTAACAG-A--AT---AAGGGTTGGAAA-GGGGCAAGA-TTAATTTTAAGAA-A---ATAAAA--A-ATCTTTCTGAATGGAA----AGCGAG---CTT--AAACT-ATTTTAAAGAGA-AATTCATAAAATTCGGTTC-TTTCACAATAGT-AAATC-TTA-ATTTTCCATGTTCATATAAA-------------TGAT---------TATTTGGTATATGTAATCAGTCTTGA-AAAGTTTGGATCTCAT--TTGTTAATTTT------------------AGA-AAGAA-TCAG-GTTA---T-TATT-------TGC-CTATACAAT-A-CAACTAAAGAAGGTTC--TT-GGAATAGCTTA---TAAGGCT---A--TTAATGGGTT-TAT-CTT-AGGATCT---A--GA--ATATTT
gi|10 : atttttcatatgtgtaatgttgtctaattgtaattgtctaagtattggcttacgagatagaaatatggtgtcaggtgaaaatatagtcatgttatataggaagtaatgctgattatttttgtatagctagaacgtttagaacgtaaagtgtgacgttgttatctgcgctattagtgtttttgttatgtttcatcgtggatgtagggttcgttaagacactaaagtcgaaataaagtagtaagatttgttttagatttggcagagagtgttgacaacgttacttcaaaagtatatgttgtgttagtgaacgggtaaacattagattgaatcatgttacatattgttattggatgcctctattatatgtgtatattttacttttgtatataaatcgtagttataatatagagaagtattttatgtaagcaatataagacagtgattaattcgtaagtggaatagaatacatgacaagagttaggggtaaatcataatGACTTGAATA-CTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACC-TTTTGA-TGAAACAAAAGCAA
gi|11 : ACAACTAACAAAGGACCCCAT-TGAA------A-----A-----------TAATGGGTT--ACCCTT-AGGATA-----CCGAACACATTTT--ACTATAGTGCT
gi|12 : ATTAT-TA-CAAACTCGTATTAAGGATAAAGAAGATGGATCTTTTTTTGTAAATGccatataaccattaa
gi|13 : atttatattataatagtatagcaagtcatcataA--AAAGACTGGAATATTTTACCAA-ACAATGTAAAGA--TGGAAATGTGGCAAAG-TAAATTTTAAGAG-TTCTGTATAA-CA---CTTTTTAA-
gi|14 : ACC--ATTGGAG------AATATAAGCCTTTAGGCTTA-TGGTTTATACCTTT-AGGATAT---ACT--ACATATTTTTAACTATAGTGCT
gi|15 : aggacACAATTC-TAAAATTCTGTTCATTTTACAATTATAAAATCCTTGTATTTTTCATGTCACTATAAACC---------
gi|16 : A-TCATTTTCA--ATATATA-------TGCACT-T-CAAT-AACAACTAACAAAa
gi|17 : agaatacaatcatcatc-TTGTTA---TTT-----------------AAA-TATAA-TCACTGTTGCTAT-GTTT-------TGACCT-T-CAAT-AACAAC
gi|19 : t---ACTGAACATATTTT--ACTATCGTGCT
gi|2 : ATTATGTA-CAACCTCGTATTAAGGGTAAAGAAGATGGATCTTCTTTTGTAAATGCCATCAAAGACTGGAATAATTTACCAG-AAAATATCAAGG--TGGAAA-GG-AGAAAGATAAATTTTAAGAA-ATCTGTAAAAACACATCTTTTTGA-TGAAGCAAAAACAAGAAGTTTACAAACTTATCTTTAAGAGACAATTC-TAAAATACTGTTCATTTTACAATTGTTAAATCCTTGTATTTTTCATGTCAATATAAACCTCATA----TGTGAT---------TATT-GGTATAC--AA--AGTCTTTCCAAAGTTCTGATCTCATC-TTGTTA---TT------------------AGA-TA-GA-TCACCGTTA--AC-TATT-------TGCACT-T-CAATGAACAGCTAACAAAGGACC--AT-GGAA------A---TAAGCCT---AGCTTAATGGGTC-TATCTTTCAGGATAT---ACTGAACATATTTT--ACTATAGTGCTccatataaccataa
gi|3 : agAAGCAAAAGGAAGAAGT--GCAATCTTATCTTTGAGGGACAATCG-TAAAATTCTATTCATCATACAATTGT-AAGTCCTTG---TTTTTATGCGAATAT---CCATTTTTTTATGTCATGTCAATCACTATT-GGTATAC--AA--AGTCTTGCCAAAGTTTTGATCTCATCTTTGTTA---TTTAGAATACTTGTTGTTTAAAA-TAGAA-TCACTATC---AT-CATTTGCACTATGCACT-T-CAAT-AACAACTAACA
gi|4 : TTATCTTTCAGAGACAATTC-TAAAATTCTATTCATTTTAC-ATTGTTAAATCCTTGTATTTTTCATGGAAA---AAAC-----------ATGAT---------TATT-GGTATAC--AA--AGT-TTGCCAA------GATCTGATCATTTTTA---TT------------------AGA-TA-AAGTCACTGTT---AT---TT-------TGCACC-T-C-AT-AAC-----ACNNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNN-NNNNNNN-NNNNNNN---NCT-AACATATTTT--ACTATAGTG
gi|5 : TCTGTTCATTTTACAATTGTAAAATCCTTGTATTTTTCATATCATTATAAACC---------T-TGCT---------TATT-GGTATAC--AA--AGTGTTGCCAAAGTTTTGATCTCAT--TTGTTA---TTT-----------------AGA-TATAA-TCACTGTTA---T-TATT-------TGCACT-T-CAAT-AACAACNNNNNNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNACTGAACATATTT---ACTATAGTGCgc
gi|6 : GAG-ATCTGTAAAAACACATCTTTTTAA-TGAAACAAAGGCAAAAAGTTTGCAAACTTATCTTCAAGAGACAATTC-TAAATTTCTGTTCATTTTACAATTGTAAAATCCTT
gi|7 : cA---TT------------------GGAATA-AAGTCACTGTTA--AT--ATT-------TGCACC-T-CAAT----------------------T-GGAA------A---TAAGCCTTTAGGCTTTATGGGTT--AGCCTT-ACGATA-----CTGAACATATTTT--ACTATAGTGTT
gi|8 : tataAGACTTGAATATCTTACCAGGACAATCTCAAGG--TGGAAA-AGGATAAAG-CAAAA-TTAAGAGCTTCTG-GAAA-CACACC--TTTGA-TGAAA-AAAAGCAAGAAGc
gi|9 : GACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACCTTTTTGA-TGAAACAAAAGCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCACTGTCATCATTTGCACTAAGTACTTCATTAATAATTAAC
Alignments
lowQualScore : 1 1 11 1 1 4444444444444444 444444444 11 11 22 111 55555555555555555 1 2222222 1111111 33333333333333333333333 11 1111
lowQualScore : 3 3 1 7 7 6 1 7 88 3 1 6 2 6 99 6 6 1 66 6 1 4 0 5 5 0 666 0 6 5 4444444444444444 6 7 333333333 8 11 11 5 0 0 33 666 5 77777777777777777 0 1111111 6666666 0 5 5 88 1 888 5 22222222222222222222222 0 33 6 5 6666 2 77
lowQualScore : . . . . . . . . .. . . . . . .. . . . .. . . . . . . . ... . . . ................ . . ......... . .. .. . . . .. ... . ................. . ....... ....... . . . .. . ... . ....................... . .. . . .... . ..
lowQualScore : 3 3 0 3 3 7 0 3 33 2 7 7 5 7 22 7 7 0 77 6 4 3 4 0 7 7 888 8 7 0 2222222222222222 7 5 888888888 0 00 00 0 8 6 33 555 7 11111111111111111 0 2222222 2222222 1 0 0 22 0 999 7 33333333333333333333333 9 66 1 7 6666 5 99
consensus : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTG-ATGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACC-----T-TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-ATA-----------------AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
Reference ( family-550 ) : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTG-ATGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACC-----TGTGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-ATA-----------------AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
gi|1 : TTGT-TATCAATCTCGTATTAAAGA----GAAG-TGGGT-TTAGATTGTAA-TGCTA--AA-GACATGCATA-ATTAACAG-A--AT---AAGGGTTGGAAA-GGGGCAAGA-TTAATTTTAAGAA-A---ATAAAA--A-ATCTTTCTGAATG----GAAAGC---GAGCTT--AAAC-TATTTTAAAGAGA-AATTCATAAAATTCGGTTC-TTTCACAATAGTAAA--TCTTA-----------------ATTTTCC-ATGTTCATATAAA---------TGATTATTTGGTATATGTAATCAGTCTTG-AAAAGTTTGGATCTCAT--TTGTTAATTTTAG-AAAG----------------AA-TCA-GGTT---AT-TATT-------TGC-CTATACAAT--ACAACTAAAGAAGGTTC--TT-GGAATAGCTTA---TAAGGCT---A--TTAATGGGTT-TA-TCTT-AGGATCT---A--GA--ATATTT
gi|10 : atttttcatatgtgtaatgttgtctaattgtaattgtctaagtattggcttacgagatagaaatatggtgtcaggtgaaaatatagtcatgttatataggaagtaatgctgattatttttgtatagctagaacgtttagaacgtaaagtgtgacgttgttatctgcgctattagtgtttttgttatgtttcatcgtggatgtagggttcgttaagacactaaagtcgaaataaagtagtaagatttgttttagatttggcagagagtgttgacaacgttacttcaaaagtatatgttgtgttagtgaacgggtaaacattagattgaatcatgttacatattgttattggatgcctctattatatgtgtatattttacttttgtatataaatcgtagttataatatagagaagtattttatgtaagcaatataagacagtgattaattcgtaagtggaatagaatacatgacaagagttaggggtaaatcataatGACTTGAATA-CTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACC-TTTTG-ATGAAACAAAAGCAA
gi|11 : ACAACTAACAAAGGACCCCAT-TGAA------A-----A-----------TAATGGGTT--ACCCTT-AGGATA-----CCGAACACATTTT--ACTATAGTGCT
gi|12 : ATTAT-TA-CAAACTCGTATTAAGGATAAAGAAGATGGATCTTTTTTTGTAAATGccatataaccattaa
gi|13 : atttatattataatagtatagcaagtcatcataA--AAAGACTGGAATATTTTACCAA-ACAATGTAAAGA--TGGAAATGTGGCAAAG-TAAATTTTAAGAG-TTCTGTATAA-CA---CTTTTTA-A
gi|14 : ACC--ATTGGAG------AATATAAGCCTTTAGGCTTA-TGGTTTATACCTTT-AGGATAT---ACT--ACATATTTTTAACTATAGTGCT
gi|15 : aggacACAATTC-TAAAATTCTGTTCATTTTACAATTATAAAATCCTTGT----------------ATTTTTC-ATGTCACTATAAACC-----
gi|16 : A-TCATTTTCA--ATATATA-------TGCACT-T-CAAT-AACAACTAACAAAa
gi|17 : agaatacaatcatcatc-TTGTTA--TTTAA-ATAT----------------AA-TCACTGTTGCTAT-GTTT-------TGACCT-T-CAAT-AACAAC
gi|19 : t---ACTGAACATATTTT--ACTATCGTGCT
gi|2 : ATTATGTA-CAACCTCGTATTAAGGGTAAAGAAGATGGATCTTCTTTTGTAAATGCCATCAAAGACTGGAATAATTTACCAG-AAAATATCAAGG--TGGAAA-GG-AGAAAGATAAATTTTAAGAA-ATCTGTAAAAACACATCTTTTTG-ATGAAGCAAAAACAAGAAGTTTACAAACTTATCTTTAAGAGACAATTC-TAAAATACTGTTCATTTTACAATTGTTAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCTCATATGTGATTA-TTGGTATA--CAA--AGTCTTTCCAAAGTTCTGATCTCATC-TTGTTA---TTAG-ATA-----------------GA-TCACCGTTA--AC-TATT-------TGCACT-T-CAATGAACAGCTAACAAAGGACC--AT-GGAA------A---TAAGCCT---AGCTTAATGGGTC-TATCTTTCAGGATAT---ACTGAACATATTTT--ACTATAGTGCTccatataaccataa
gi|3 : agAAGCAAAAGGAAGAAGT--GCAATCTTATCTTTGAGGGACAATCG-TAAAATTCTATTCATCATACAATTGTAAG-TCCTTGTTTTTATGCGAATATCCATTTTTTTATGTCA-TGTCAATC---------ACTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATCTTTGTTA--TTTAGAATACTTGTTGTTTAAAATAGAA-TCACTATC---AT-CATTTGCACTATGCACT-T-CAAT-AACAACTAACA
gi|4 : TTATCTTTCAGAGACAATTC-TAAAATTCTATTCATTTTAC-ATTGTTAAATCCTTGT----------------ATTTTTC-ATGGAAA---AAAC-------ATGATTA-TTGGTATA--CAA--AGT-TTGCCAA------GATCTGATCATTTTTA---TTAG-ATA-----------------AAGTCACTGTT---AT---TT-------TGCACC-T-C-AT-AAC-----ACNNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNN-NNNNNNN-NNNNNNN---NCT-AACATATTTT--ACTATAGTG
gi|5 : TCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATATCATTATAAACC-----T-TGCTTA-TTGGTATA--CAA--AGTGTTGCCAAAGTTTTGATCTCAT--TTGTTA--TTTAG-ATAT----------------AA-TCACTGTTA---T-TATT-------TGCACT-T-CAAT-AACAACNNNNNNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNACTGAACATATTT---ACTATAGTGCgc
gi|6 : GAG-ATCTGTAAAAACACATCTTTTTA-ATGAAACAAAGGCAAAAAGTTTGCAAACTTATCTTCAAGAGACAATTC-TAAATTTCTGTTCATTTTACAATTGTAAAATCCTT
gi|7 : c-ATA-----------------AAGTCACTGTTA--AT--ATT-------TGCACC-T-CAAT----------------------T-GGAA------A---TAAGCCTTTAGGCTTTATGGGTT--AGCCTT-ACGATA-----CTGAACATATTTT--ACTATAGTGTT
gi|8 : tataattggaAGACTTGAATATCTTACCAGGACAATCTCAAGG--TGGAAA-AGGATAAAG-CAAAA-TTAAGAGCTTCTG-GAAA-CACACC--TTTG-ATGAAA-AAAAGCAAGAAGc
gi|9 : GACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACCTTTTTG-ATGAAACAAAAGCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCACTGTCATCATTTGCACTAAGTACTTCATTAATAATTAAC
Alignments
lowQualScore : 1 1 11 1 1 4444444444444444 3333333 11 11 22 111 55555555555555555 1 2222222 1111111 33333333333333333333333 11 1111
lowQualScore : 3 3 1 7 7 6 1 7 88 3 1 6 2 6 99 6 6 1 66 6 1 4 0 5 5 4 0 666 0 6 5 4444444444444444 6 7 1 8888888 8 11 11 5 0 0 33 666 5 77777777777777777 0 1111111 6666666 0 5 5 88 1 888 5 22222222222222222222222 0 33 6 5 6666 2 77
lowQualScore : . . . . . . . . .. . . . . . .. . . . .. . . . . . . . . ... . . . ................ . . . ....... . .. .. . . . .. ... . ................. . ....... ....... . . . .. . ... . ....................... . .. . . .... . ..
lowQualScore : 3 3 0 3 3 7 0 3 33 2 7 7 5 7 22 7 7 0 77 6 4 3 4 0 7 3 8 888 8 7 0 2222222222222222 7 5 0 4444444 0 00 00 0 8 6 33 555 7 11111111111111111 0 2222222 2222222 1 0 0 22 0 999 7 33333333333333333333333 9 66 1 7 6666 5 99
consensus : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCT------TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-ATA-----------------AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
Reference ( family-550 ) : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCT------TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-ATA-----------------AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
gi|1 : TTGT-TATCAATCTCGTATTAAAGA----GAAG-TGGGT-TTAGATTGTAA-TGCTA--AA-GACATGCATA-ATTAACAG-A--AT---AAGGGTTGGAAA-GGGGCAAGA-TTAATTTTAAGAA-A---ATAAAA--A-ATCTTTCTGAATGGAA----AGCGAG---CTT--AAACT-ATTTTAAAGAGA-AATTCATAAAATTCGGTTC-TTTCACAATAGTAAA--TCTTA-----------------ATTTTCC-ATGTTCATATAAA---------TGATTATTTGGTATATGTAATCAGTCTTG-AAAAGTTTGGATCTCAT--TTGTTAATTTTAG-AAAG----------------AA-TCA-GGTT---AT-TATT-------TGC-CTATACAAT--ACAACTAAAGAAGGTTC--TT-GGAATAGCTTA---TAAGGCT---A--TTAATGGGTT-TA-TCTT-AGGATCT---A--GA--ATATTT
gi|10 : atttttcatatgtgtaatgttgtctaattgtaattgtctaagtattggcttacgagatagaaatatggtgtcaggtgaaaatatagtcatgttatataggaagtaatgctgattatttttgtatagctagaacgtttagaacgtaaagtgtgacgttgttatctgcgctattagtgtttttgttatgtttcatcgtggatgtagggttcgttaagacactaaagtcgaaataaagtagtaagatttgttttagatttggcagagagtgttgacaacgttacttcaaaagtatatgttgtgttagtgaacgggtaaacattagattgaatcatgttacatattgttattggatgcctctattatatgtgtatattttacttttgtatataaatcgtagttataatatagagaagtattttatgtaagcaatataagacagtgattaattcgtaagtggaatagaatacatgacaagagttaggggtaaatcataatGACTTGAATA-CTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACC-TTTTGA-TGAAACAAAAGCAA
gi|11 : ACAACTAACAAAGGACCCCAT-TGAA------A-----A-----------TAATGGGTT--ACCCTT-AGGATA-----CCGAACACATTTT--ACTATAGTGCT
gi|12 : ATTAT-TA-CAAACTCGTATTAAGGATAAAGAAGATGGATCTTTTTTTGTAAATGccatataaccattaa
gi|13 : atttatattataatagtatagcaagtcatcataA--AAAGACTGGAATATTTTACCAA-ACAATGTAAAGA--TGGAAATGTGGCAAAG-TAAATTTTAAGAG-TTCTGTATAA-CA---CTTTTTAA-
gi|14 : ACC--ATTGGAG------AATATAAGCCTTTAGGCTTA-TGGTTTATACCTTT-AGGATAT---ACT--ACATATTTTTAACTATAGTGCT
gi|15 : aggacACAATTC-TAAAATTCTGTTCATTTTACAATTATAAAATCCTTGT----------------ATTTTTC-ATGTCACTATAAACC
gi|16 : A-TCATTTTCA--ATATATA-------TGCACT-T-CAAT-AACAACTAACAAAa
gi|17 : agaatacaatcatcatc-TTGTTA--TTTAA-ATAT----------------AA-TCACTGTTGCTAT-GTTT-------TGACCT-T-CAAT-AACAAC
gi|19 : t---ACTGAACATATTTT--ACTATCGTGCT
gi|2 : ATTATGTA-CAACCTCGTATTAAGGGTAAAGAAGATGGATCTTCTTTTGTAAATGCCATCAAAGACTGGAATAATTTACCAG-AAAATATCAAGG--TGGAAA-GG-AGAAAGATAAATTTTAAGAA-ATCTGTAAAAACACATCTTTTTGA-TGAAGCAAAAACAAGAAGTTTACAAACTTATCTTTAAGAGACAATTC-TAAAATACTGTTCATTTTACAATTGTTAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCTCATATGTGATTA-TTGGTATA--CAA--AGTCTTTCCAAAGTTCTGATCTCATC-TTGTTA---TTAG-ATA-----------------GA-TCACCGTTA--AC-TATT-------TGCACT-T-CAATGAACAGCTAACAAAGGACC--AT-GGAA------A---TAAGCCT---AGCTTAATGGGTC-TATCTTTCAGGATAT---ACTGAACATATTTT--ACTATAGTGCTccatataaccataa
gi|3 : agAAGCAAAAGGAAGAAGT--GCAATCTTATCTTTGAGGGACAATCG-TAAAATTCTATTCATCATACAATTGTAAG-TCCTTGTTTTTATGCGAATATCCATTTTTTTATGTCA-TGTCAATC---------ACTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATCTTTGTTA--TTTAGAATACTTGTTGTTTAAAATAGAA-TCACTATC---AT-CATTTGCACTATGCACT-T-CAAT-AACAACTAACA
gi|4 : TTATCTTTCAGAGACAATTC-TAAAATTCTATTCATTTTAC-ATTGTTAAATCCTTGT----------------ATTTTTC-ATGGAAA---AAACA-------TGATTA-TTGGTATA--CAA--AGT-TTGCCAA------GATCTGATCATTTTTA---TTAG-ATA-----------------AAGTCACTGTT---AT---TT-------TGCACC-T-C-AT-AAC-----ACNNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNN-NNNNNNN-NNNNNNN---NCT-AACATATTTT--ACTATAGTG
gi|5 : TCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATATCATTATAAACCT------TGCTTA-TTGGTATA--CAA--AGTGTTGCCAAAGTTTTGATCTCAT--TTGTTA--TTTAG-ATAT----------------AA-TCACTGTTA---T-TATT-------TGCACT-T-CAAT-AACAACNNNNNNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNACTGAACATATTT---ACTATAGTGCgc
gi|6 : GAG-ATCTGTAAAAACACATCTTTTTAA-TGAAACAAAGGCAAAAAGTTTGCAAACTTATCTTCAAGAGACAATTC-TAAATTTCTGTTCATTTTACAATTGTAAAATCCTT
gi|7 : c-ATA-----------------AAGTCACTGTTA--AT--ATT-------TGCACC-T-CAAT----------------------T-GGAA------A---TAAGCCTTTAGGCTTTATGGGTT--AGCCTT-ACGATA-----CTGAACATATTTT--ACTATAGTGTT
gi|8 : tataattggaAGACTTGAATATCTTACCAGGACAATCTCAAGG--TGGAAA-AGGATAAAG-CAAAA-TTAAGAGCTTCTG-GAAA-CACACC--TTTGA-TGAAA-AAAAGCAAGAAGc
gi|9 : GACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACCTTTTTGA-TGAAACAAAAGCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCACTGTCATCATTTGCACTAAGTACTTCATTAATAATTAAC
Alignments
lowQualScore : 1 1 11 1 1 4444444444444444 3333333 11 11 22 111 55555555555555555 1 2222222 1111111 33333333333333333333333 11 1111
lowQualScore : 3 3 1 7 7 6 1 7 88 3 1 6 2 6 99 6 6 1 66 6 1 4 0 5 5 4 0 666 0 6 5 4444444444444444 6 7 1 8888888 8 11 11 5 0 0 33 666 5 77777777777777777 0 1111111 6666666 0 5 5 88 1 888 5 22222222222222222222222 0 33 6 5 6666 2 77
lowQualScore : . . . . . . . . .. . . . . . .. . . . .. . . . . . . . . ... . . . ................ . . . ....... . .. .. . . . .. ... . ................. . ....... ....... . . . .. . ... . ....................... . .. . . .... . ..
lowQualScore : 3 3 0 3 3 7 0 3 33 2 7 7 5 7 22 7 7 0 77 6 4 3 4 0 7 3 8 888 8 7 0 2222222222222222 7 5 0 4444444 0 00 00 0 8 6 33 555 7 11111111111111111 0 2222222 2222222 1 0 0 22 0 999 7 33333333333333333333333 9 66 1 7 6666 5 99
consensus : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCT------TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-ATA-----------------AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
Reference ( family-550 ) : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCT------TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-ATA-----------------AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
gi|1 : TTGT-TATCAATCTCGTATTAAAGA----GAAG-TGGGT-TTAGATTGTAA-TGCTA--AA-GACATGCATA-ATTAACAG-A--AT---AAGGGTTGGAAA-GGGGCAAGA-TTAATTTTAAGAA-A---ATAAAA--A-ATCTTTCTGAATGGAA----AGCGAG---CTT--AAACT-ATTTTAAAGAGA-AATTCATAAAATTCGGTTC-TTTCACAATAGTAAA--TCTTA-----------------ATTTTCC-ATGTTCATATAAA---------TGATTATTTGGTATATGTAATCAGTCTTG-AAAAGTTTGGATCTCAT--TTGTTAATTTTAG-AAAG----------------AA-TCA-GGTT---AT-TATT-------TGC-CTATACAAT--ACAACTAAAGAAGGTTC--TT-GGAATAGCTTA---TAAGGCT---A--TTAATGGGTT-TA-TCTT-AGGATCT---A--GA--ATATTT
gi|10 : atttttcatatgtgtaatgttgtctaattgtaattgtctaagtattggcttacgagatagaaatatggtgtcaggtgaaaatatagtcatgttatataggaagtaatgctgattatttttgtatagctagaacgtttagaacgtaaagtgtgacgttgttatctgcgctattagtgtttttgttatgtttcatcgtggatgtagggttcgttaagacactaaagtcgaaataaagtagtaagatttgttttagatttggcagagagtgttgacaacgttacttcaaaagtatatgttgtgttagtgaacgggtaaacattagattgaatcatgttacatattgttattggatgcctctattatatgtgtatattttacttttgtatataaatcgtagttataatatagagaagtattttatgtaagcaatataagacagtgattaattcgtaagtggaatagaatacatgacaagagttaggggtaaatcataatGACTTGAATA-CTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACC-TTTTGA-TGAAACAAAAGCAA
gi|11 : ACAACTAACAAAGGACCCCAT-TGAA------A-----A-----------TAATGGGTT--ACCCTT-AGGATA-----CCGAACACATTTT--ACTATAGTGCT
gi|12 : ATTAT-TA-CAAACTCGTATTAAGGATAAAGAAGATGGATCTTTTTTTGTAAATGccatataaccattaa
gi|13 : atttatattataatagtatagcaagtcatcataA--AAAGACTGGAATATTTTACCAA-ACAATGTAAAGA--TGGAAATGTGGCAAAG-TAAATTTTAAGAG-TTCTGTATAA-CA---CTTTTTAA-
gi|14 : ACC--ATTGGAG------AATATAAGCCTTTAGGCTTA-TGGTTTATACCTTT-AGGATAT---ACT--ACATATTTTTAACTATAGTGCT
gi|15 : aggacACAATTC-TAAAATTCTGTTCATTTTACAATTATAAAATCCTTGT----------------ATTTTTC-ATGTCACTATAAACC
gi|16 : A-TCATTTTCA--ATATATA-------TGCACT-T-CAAT-AACAACTAACAAAa
gi|17 : agaatacaatcatcatc-TTGTTA--TTTAA-ATAT----------------AA-TCACTGTTGCTAT-GTTT-------TGACCT-T-CAAT-AACAAC
gi|19 : t---ACTGAACATATTTT--ACTATCGTGCT
gi|2 : ATTATGTA-CAACCTCGTATTAAGGGTAAAGAAGATGGATCTTCTTTTGTAAATGCCATCAAAGACTGGAATAATTTACCAG-AAAATATCAAGG--TGGAAA-GG-AGAAAGATAAATTTTAAGAA-ATCTGTAAAAACACATCTTTTTGA-TGAAGCAAAAACAAGAAGTTTACAAACTTATCTTTAAGAGACAATTC-TAAAATACTGTTCATTTTACAATTGTTAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCTCATATGTGATTA-TTGGTATA--CAA--AGTCTTTCCAAAGTTCTGATCTCATC-TTGTTA---TTAG-ATA-----------------GA-TCACCGTTA--AC-TATT-------TGCACT-T-CAATGAACAGCTAACAAAGGACC--AT-GGAA------A---TAAGCCT---AGCTTAATGGGTC-TATCTTTCAGGATAT---ACTGAACATATTTT--ACTATAGTGCTccatataaccataa
gi|3 : agAAGCAAAAGGAAGAAGT--GCAATCTTATCTTTGAGGGACAATCG-TAAAATTCTATTCATCATACAATTGTAAG-TCCTTGTTTTTATGCGAATATCCATTTTTTTATGTCA-TGTCAATC---------ACTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATCTTTGTTA--TTTAGAATACTTGTTGTTTAAAATAGAA-TCACTATC---AT-CATTTGCACTATGCACT-T-CAAT-AACAACTAACA
gi|4 : TTATCTTTCAGAGACAATTC-TAAAATTCTATTCATTTTAC-ATTGTTAAATCCTTGT----------------ATTTTTC-ATGGAAA---AAACA-------TGATTA-TTGGTATA--CAA--AGT-TTGCCAA------GATCTGATCATTTTTA---TTAG-ATA-----------------AAGTCACTGTT---AT---TT-------TGCACC-T-C-AT-AAC-----ACNNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNN-NNNNNNN-NNNNNNN---NCT-AACATATTTT--ACTATAGTG
gi|5 : TCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATATCATTATAAACCT------TGCTTA-TTGGTATA--CAA--AGTGTTGCCAAAGTTTTGATCTCAT--TTGTTA--TTTAG-ATAT----------------AA-TCACTGTTA---T-TATT-------TGCACT-T-CAAT-AACAACNNNNNNNNNNNN--NN-NNNN------N---NNNNNNN---NNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNACTGAACATATTT---ACTATAGTGCgc
gi|6 : GAG-ATCTGTAAAAACACATCTTTTTAA-TGAAACAAAGGCAAAAAGTTTGCAAACTTATCTTCAAGAGACAATTC-TAAATTTCTGTTCATTTTACAATTGTAAAATCCTT
gi|7 : c-ATA-----------------AAGTCACTGTTA--AT--ATT-------TGCACC-T-CAAT----------------------T-GGAA------A---TAAGCCTTTAGGCTTTATGGGTT--AGCCTT-ACGATA-----CTGAACATATTTT--ACTATAGTGTT
gi|8 : tataattggaAGACTTGAATATCTTACCAGGACAATCTCAAGG--TGGAAA-AGGATAAAG-CAAAA-TTAAGAGCTTCTG-GAAA-CACACC--TTTGA-TGAAA-AAAAGCAAGAAGc
gi|9 : GACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACCTTTTTGA-TGAAACAAAAGCAA
blockSeqs : G . A T A C T A TC A T G C C . T A A CT G A C T . C TTA . A TTTTATGCGAATATCC T C C TCATATG . . . C CT T A CTTGTTGTTTAAAATAG G GCTATG TGCACTA . . GA A CCA T AATATAAGCCTTTAGGC AT C C NNNN G TA
blockSeqs : . . C T A C C A . A A . C G . . . T T G A C T . C TTG . A . . A C T . . . C CA T . T G AATAT . . . A A A . ATAAGCCTTTAGGC T C . T G .
blockSeqs : A T . A A . . . T T G . C T . C G . A . . A T . . . . G C T . T . AACT . . . A A A . ATAAGCCTAGC N T . T G .
blockSeqs : T . C C . . . A A G . C T . C . A . . T C . . . . . . . . . . ATC . . . A N N . NNNNNNNNNNN N N . N G .
blockSeqs : . . C C . . . A A . . C . . C . A . . . C . . . . ATT . . . A N N . NNNNNNNNNNN . N . . G .
blockSeqs : T . . . . . . . . . . AAT . . . A . . . AA . G . . . .
blockSeqs : . AT . . . . .
blockSeqCons : ** ** ** C* T** T**************** A* ATAAGCCTTTAGGC*********
originalCons : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCT------TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-ATA-----------------AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAA------A---TAAGCCT---GGCTTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
finalCons : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCT------TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTAT--TTAG-ATAT----------------AA-TCACTGTTA--AT-TATT-------TGCACT-T-CAATA-ACAACTAACAAAGGACC--AT-GGAAATAAGCCTTTAGGC---------TTAATGGGTT-TACCCTT-AGGATAT---ACTGAACATATTTT--ACTATAGTGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCACTGTCATCATTTGCACTAAGTACTTCATTAATAATTAAC
Alignments
lowQualScore : 1 1 11 1 1 4444444444444444 3333333 11 11 22 111 44444444444444444 222 11 1111111 1111111111111111111
lowQualScore : 3 3 1 7 7 6 1 7 88 3 1 6 2 6 99 6 6 1 66 6 1 4 0 5 5 4 0 666 0 6 5 4444444444444444 6 7 1 8888888 8 11 11 5 0 0 33 666 00000000000000000 9 444 33 6666666 0 5 5 88 1 00 1 888 5 0 7777777777777777777 4 0 66 6 5 0 0 2 77
lowQualScore : . . . . . . . . .. . . . . . .. . . . .. . . . . . . . . ... . . . ................ . . . ....... . .. .. . . . .. ... ................. . ... .. ....... . . . .. . .. . ... . . ................... . . .. . . . . . ..
lowQualScore : 3 3 0 3 3 7 0 3 33 2 7 7 5 7 22 7 7 0 77 6 4 3 4 0 7 3 8 888 8 7 0 2222222222222222 7 5 0 4444444 0 00 00 0 8 6 33 555 00000000000000000 6 222 11 2222222 1 0 0 22 4 99 0 999 7 9 7777777777777777777 6 9 66 1 7 9 9 5 99
consensus : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCT------TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-----------------ATANAATCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAAA---TAAGCCT-TTAGGC--TTAATGGGTT-TACCCTT-AGGATATACTGAACATATTTT--ACTATAGTGCT
Reference ( family-550 ) : NNATTAT-TA-CAANCTCGTATTAAGGATAAAGAAGATGGATCTTNTTTTGTAAATGCCA--AAAGACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAANTTTAAGAG-NTCTGTGAAA-CACACCTTTTTGA-TGAAACAAAAGCAAGAAGTTTGCAAACTTATCTTTAAGAGACAATTC-TAAAATTCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCT------TGATTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATC-TTGTTA--TTTAG-----------------ATATAATCACTGTTA--AT-TATT-------TGCACT-T-CAAT-AACAACTAACAAAGGACC--AT-GGAAA---TAAGCCT-TTAGGC--TTAATGGGTT-TACCCTT-AGGATATACTGAACATATTTT--ACTATAGTGCT
gi|1 : TTGT-TATCAATCTCGTATTAAAGA----GAAG-TGGGT-TTAGATTGTAA-TGCTA--AA-GACATGCATA-ATTAACAG-A--AT---AAGGGTTGGAAA-GGGGCAAGA-TTAATTTTAAGAA-A---ATAAAA--A-ATCTTTCTGAATGGAA----AGCGAG---CTT--AAACT-ATTTTAAAGAGA-AATTCATAAAATTCGGTTC-TTTCACAATAGTAAA--TCTTA-----------------ATTTTCC-ATGTTCATATAAA---------TGATTATTTGGTATATGTAATCAGTCTTG-AAAAGTTTGGATCTCAT--TTGTTAATTTTAG-----------------AAAGAATCA-GGTT---AT-TATT-------TGC-CTATACAAT--ACAACTAAAGAAGGTTC--TT-GG-AA---T-AGCTTATAAGGCTATTAATGGGTT-TA-TCTT-AGGATCTA--GA--ATATTT
gi|10 : atttttcatatgtgtaatgttgtctaattgtaattgtctaagtattggcttacgagatagaaatatggtgtcaggtgaaaatatagtcatgttatataggaagtaatgctgattatttttgtatagctagaacgtttagaacgtaaagtgtgacgttgttatctgcgctattagtgtttttgttatgtttcatcgtggatgtagggttcgttaagacactaaagtcgaaataaagtagtaagatttgttttagatttggcagagagtgttgacaacgttacttcaaaagtatatgttgtgttagtgaacgggtaaacattagattgaatcatgttacatattgttattggatgcctctattatatgtgtatattttacttttgtatataaatcgtagttataatatagagaagtattttatgtaagcaatataagacagtgattaattcgtaagtggaatagaatacatgacaagagttaggggtaaatcataatGACTTGAATA-CTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACC-TTTTGA-TGAAACAAAAGCAA
gi|11 : ACAACTAACAAAGGACCCCAT-TGAAA-------------A------TAATGGGTT--ACCCTT-AGGATA--CCGAACACATTTT--ACTATAGTGCT
gi|12 : ATTAT-TA-CAAACTCGTATTAAGGATAAAGAAGATGGATCTTTTTTTGTAAATGccatataaccattaa
gi|13 : atttatattataatagtatagcaagtcatcataA--AAAGACTGGAATATTTTACCAA-ACAATGTAAAGA--TGGAAATGTGGCAAAG-TAAATTTTAAGAG-TTCTGTATAA-CA---CTTTTTAA-
gi|14 : ACC--ATTGGAGAATATAAGCCT-TTAGGC--TT-ATGGTTTATACCTTT-AGGATATACT--ACATATTTTTAACTATAGTGCT
gi|15 : aggacACAATTC-TAAAATTCTGTTCATTTTACAATTATAAAATCCTTGT----------------ATTTTTC-ATGTCACTATAAACC
gi|16 : ATCATCATTTTCA--ATATATA-------TGCACT-T-CAAT-AACAACTAACAAAa
gi|17 : agaatacaatcatc-TTGTTA--TTTAA-----------------ATATAATCACTGTTGCTAT-GTTT-------TGACCT-T-CAAT-AACAAC
gi|19 : tACTGAACATATTTT--ACTATCGTGCT
gi|2 : ATTATGTA-CAACCTCGTATTAAGGGTAAAGAAGATGGATCTTCTTTTGTAAATGCCATCAAAGACTGGAATAATTTACCAG-AAAATATCAAGG--TGGAAA-GG-AGAAAGATAAATTTTAAGAA-ATCTGTAAAAACACATCTTTTTGA-TGAAGCAAAAACAAGAAGTTTACAAACTTATCTTTAAGAGACAATTC-TAAAATACTGTTCATTTTACAATTGTTAAATCCTTGT----------------ATTTTTC-ATGTCAATATAAACCTCATATGTGATTA-TTGGTATA--CAA--AGTCTTTCCAAAGTTCTGATCTCATC-TTGTTA---TTAG-----------------ATA-GATCACCGTTA--AC-TATT-------TGCACT-T-CAATGAACAGCTAACAAAGGACC--AT-GGAAA---TAAGCCT----AGC--TTAATGGGTC-TATCTTTCAGGATATACTGAACATATTTT--ACTATAGTGCTccatataaccataa
gi|3 : agAAGCAAAAGGAAGAAGT--GCAATCTTATCTTTGAGGGACAATCG-TAAAATTCTATTCATCATACAATTGTAAG-TCCTTGTTTTTATGCGAATATCCATTTTTTTATGTCA-TGTCAATC---------ACTA-TTGGTATA--CAA--AGTCTTGCCAAAGTTTTGATCTCATCTTTGTTA--TTTAGAATACTTGTTGTTTAAAATAGAATCACTATC---AT-CATTTGCACTATGCACT-T-CAAT-AACAACTAACA
gi|4 : TTATCTTTCAGAGACAATTC-TAAAATTCTATTCATTTTAC-ATTGTTAAATCCTTGT----------------ATTTTTC-ATGGAAA---AAACA-------TGATTA-TTGGTATA--CAA--AGT-TTGCCAA------GATCTGATCATTTTTA---TTAG-----------------ATAAAGTCACTGTT---AT---TT-------TGCACC-T-C-AT-AAC-AC-------NNNNN--NN-NNNNN---NNNNNNN-NNNNNN--NNNNNNNNNN-NNNNNNN-NNNNNNNNCT-AACATATTTT--ACTATAGTG
gi|5 : TCTGTTCATTTTACAATTGTAAAATCCTTGT----------------ATTTTTC-ATATCATTATAAACCT------TGCTTA-TTGGTATA--CAA--AGTGTTGCCAAAGTTTTGATCTCAT--TTGTTA--TTTAG-----------------ATATAATCACTGTT---AT-TATT-------TGCACT-T-CAAT-AACAACNNNNNNNNNNNN--NN-NNNNN---NNNNNNN-NNNNNN--NNNNNNNNNN-NNNNNNN-NNNNNNNACTGAACATA-TTT--ACTATAGTGCgc
gi|6 : GAG-ATCTGTAAAAACACATCTTTTTAA-TGAAACAAAGGCAAAAAGTTTGCAAACTTATCTTCAAGAGACAATTC-TAAATTTCTGTTCATTTTACAATTGTAAAATCCTT
gi|7 : c-----------------ATAAAGTCACTGTTA--AT--ATT-------TGCACC-T-CAAT----------------------T-GGAAA---TAAGCCT-TTAGGC--TTTATGGG-T-TAGCCTT-ACG--ATACTGAACATATTTT--ACTATAGTGTT
gi|8 : tataattggaAGACTTGAATATCTTACCAGGACAATCTCAAGG--TGGAAA-AGGATAAAG-CAAAA-TTAAGAGCTTCTG-GAAA-CACACC--TTTGA-TGAAA-AAAAGCAAGAAGc
gi|9 : GACTTGAATATCTTACCAG-ACAATCTCAAGG--TGGAAA-GGGATAAAG-CAAAATTTAAGAG-TTCT-TGAAA-CACACCTTTTTGA-TGAAACAAAAGCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATCACTGTCATCATTTGCACTAAGTACTTCATTAATAATTAAC