lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 1 55555 1 1 55555555555555555555 1111111111111 2222 1 111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22222222 7777777777 33333 1 1 1 222 3333333 1 22 1 11 3333333 111 11 11111 11 111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 222222 11 222222 111 22 22 1 33333333333333333333333333333333333333 000000000000000000000000 4 1 4 555555555 444444444444 1 2222 1111111 11 22 1111 111 111 333333 999999999999999999999999999999 1 1111 1111111 3333333 11
lowQualScore : 6 7 00000 3 6 8 6 22 2 3 0 33333333333333333333 2 8888888888888 1111 6 0 888888 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 33 0 55555555 6 7777777777 4 22222 5 6 6 6 5 0 000 6 3333333 4 3 7 33 0 2 33 77 0000000 777 1 3 44 0 6 22222 99 33 44 4 000000 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 1 3 8 0 333333 1 3 8 22 0 8 77 333333 444 3 3 66 8 3 5 00 1 1 8 1 8 5 3 00 3 7 99999999999999999999999999999999999999 6 999999999999999999999999 0 7 6 0 666666666 4 222222222222 5 4444 9999999 33 8 44 5555 888 6 5 111 4 333 2 000000 0 888888888888888888888888888888 6 2 6 3 2 1 2222 4444444 8888888 11 8 3 1
lowQualScore : . . ..... . . . . .. . . . .................... . ............. .... . . ...... ............................................................................................................................................................... . .. . ........ . .......... . ..... . . . . . . ... . ....... . . . .. . . .. .. ....... ... . . .. . . ..... .. .. .. . ...... ............................................................................................................... . . . . . ...... . . . .. . . .. ...... ... . . .. . . . .. . . . . . . . .. . . ...................................... . ........................ . . . . ......... . ............ . .... ....... .. . .. .... ... . . ... . ... . ...... . .............................. . . . . . . .... ....... ....... .. . . .
lowQualScore : 0 0 00000 0 0 3 0 55 5 0 0 88888888888888888888 5 2222222222222 2222 5 0 555555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 55 8 00000000 0 0000000000 0 55555 0 0 0 0 5 5 555 7 7777777 7 3 3 77 7 0 88 88 5555555 555 2 2 55 8 5 55555 55 88 22 5 888888 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 4 2 0 8 000000 0 2 0 00 8 0 00 000000 000 2 8 22 0 2 0 22 4 4 0 8 0 6 2 33 3 0 22222222222222222222222222222222222222 0 000000000000000000000000 0 0 0 0 000000000 0 000000000000 7 0000 5555555 88 2 66 6666 333 7 2 777 0 555 5 888888 3 888888888888888888888888888888 7 2 5 0 0 0 3333 1111111 4444444 44 0 2 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACTATTTCATTTTAGAGATGNGACAAAGAGGACGATTTGCTGGGTTTTCGCTNTATGTGTCNAAC-ACAACT-ANAA-----AGGANGAN--GGNTAT---CTATGTT---ACGAG-A-ACGGAC-AGGA---GT-CACCG-ACCNCG--GATTCCA--GT-ACAAC---T-TG---TGTCAA---CANGGACGTTACGTNATATTT--TACAA-CG------AAAGACTTACC-G-GA---ATAGCCTATCCTGCTG-G--TACGAAAC-AGACACA-AT-CG---T-CANT------GAACTGTGCGAAGTGACCGATNNCNGGCAATGTNGTAGTATCACACACCANTGTTACAATTCAAGTACATTTAGTTTATGATAAATGAGGCACTNTGNTNTCTCTACATTGCGATTTTAGGNTGT-CAAGAATCGGGCGTGTATGGATATAATTGCGATCTACCCTG--CCCAAACGACTGTCAGGAA-TGA--GA---TGTGACATCGTCAACGGAAC-GTGTCTGGGTTGTACTNCAGGATGGACGGGGGNNTT--CTGTAATNAACGTAAGATTATACT---T--NTTACA------ACTTTATTCAANTGCNNTTGATACTCTG-ATT--T-GTG----TAATATAAAA----AT-CCGAAAA--ACA---TTT------AAT-G----TTTTACAGCCTGTCCCGCTGGA-TATTACG------GTGTANAGTG-TAGATCAAAG-TGTACTG------GACACTGC---ANAGACGACAAGTCC-TGTAATCGNACNACTGGACGATGTGACTATGGCTGTGACAATGGATGGA-CGGG-GATACATTGTAACACAC-GT-AAGTCACTTGTCATT-ATCT--AAGAC-----GAACA-AATANAAATACATCTACTAACTGTGGAACATTCGATAGACAGACATTATTTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTATA-ATATAAAATGAT--AATANAAAGTACAAATCTTCAAGAAAAT---CATTTTGT----CAGANTGTCCTGCGGAAT-C-CTACGGTCCTG-ACTGT---GTGNAT--NANTGTA------GCGGACA----CTGTC----TG--AGT--CC-----CCGTGTAACAGAACAACNGGACGATGTGACAATGGCTG---TAATCCN------GGATATACAGGGGAAC-TNTGTGACAA
Reference ( gi|1 ) : ATTGAACTGAGATCATTAGAAAAATTGTAAATTAAGACTAATGATTGAAAACTGAATTTTCCTTCTTTATAACAATTTCA-----GAGATGAGACAGAGAGGACGTTTTGCTGGTTTTTTGCTCTATGTGTCAAAC-ACAACT-ATAA-----AGGAGGAA--GGGTAT---CTATGTT---ACAAG-A-ACGGAC-AGGA---GT-TACCG-ACCTTG--GATTTCA--GT-ACAAC---T-TG---TGTCAAA--CATGGACGTTACATAATATTT--TACAA-TG------AAAGACTTGTC-G-GA---ACAACTTATCCTACCG-G-ATATGAAAC-AGCTACA-AT-CG---T-CACT------GAATTGTGTGAAGTAACCG-TAACAGGTAATATTGT-GT----TACATCATTGT-ACAATTAAAATACATTTAGCTTATGATAAACGAGATACTCTACCTTCTCTACATTATGCCTATAGGTTGT-CAAGAATCAGGTGTGTATGGATCAAACTGTGATGTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-ATGTTTGGGTTGTACTGCAGGATGGGTGGGAGACTT--TTGTAATAAATGTAAGATTATGCT---T--TTTACATGT---ACTTTATTCAATTATACTTAATACTCTA-ATT--T-GT-----TAATTTAAAA----AT-CTGAAAA--ACA---TTTC-----AAT-GACCTTTTTACAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTG-TAGGTCAAAG-TGTACTG------GACACTGC---AGAGACAACAAGTCC-TGTAATCACACCACTGGACTCTGTGACTATGGCTGTGACAATGGATGGA-CAGG-GATACATTGTAACACAA-GT-AATTCACC--ACAAT-ATCT--AAAAC-----AAATAGAATACATATACATCTACCAACT-----ACATACTATAG--AGAGATTATTT-GATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAA--TA-AAATTTCCAATAAAAT---CATTTTGT----CAGCATGTCTTGCCGAAT-C-CTACGGTCCTG-ACTGT---GTGTAT--AACTGTA------GTGGACA----GTGTC----TG--AGTTCTC---TCCCCTGTAACAGGACAACAGGAAGTTGTGACGGTGGCTG---TAATCCA------GGGTATACAGGGCAAC-TCTGTGACAA
gi|4 : TTACAACTATTTCATTTTAGAAATGCGACAAAGAGGAAGAATGGCGGGGTTTTCATTGTATCTATCAAAC-ACATCT-AACA-----TTGAGAAT--GGTTAC---TTGTGCT---ACAAG-G-ACGGAC-CGGA---TT-TACCT-CCCCTG--GATTTTA--GT-ATTAC---C-TG---TATCAAT--CAAGGCCGTTATGTTATATTT--TACAA-CG------AGAGA-TTACC-G-GGAGTACAG--TATCCTGCTG-G-TTACG-----------A-AT-TG---TGGACTTTGATAGAAATATGTGAAGTGATCG-TTCTTGGCAATGTGGTAGTATCATATATCAATGT-A-AAT
gi|2 : ttgctgatatgcactgcaaacaattacaattctagacagaaccgaattcagATTTTA-----GAGATGAGACAAAGAGGACGTTTTGCTGGGTTTTCGCTCTATGTGTCCAATTACAACT-AAAA-----AG-----A--GGGTATGTACTAT-TT---ACAA--A-ACGGAC-AGGA---GT-TACCG---CT----GACTCCA--GT-ACA-C---TATA---TGCCAA---CATGGACGTTACTTAAT------TACAAATG------AAAAACTTTT----GA---A-AACTTATCCTACCGCGCATACCAAAC-AAACACA-GT--G---T-CACT------GAATTG---GAAGTAACTGATAACAG-TAATGTT----T----CACACCATTATTACA-TTCAAGTACATTTAGTTTATGATAAATGAGGCACTTTGATATCTCTACATTGCATCTTTAGGCTGT-CAAGAATCAGGTGTGTATGGATCTAACTGTGATCTACCCTG--CCCAAACAACTGTCAGGAAAGGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTACAGGGTGGACGGGGGAGTT--TTGTAACAAATGTAAGATTATATT---T--ATTATA---------TCATTCAAATGTTGTTGATACTTTG-ATGAAT-GTA----TAATATAAAATG--ATAATAAAAAGTACAAATCTTCAAAGAAAT-AACCATTTTGTAGCCTGCCCCGCTGGA-TATTACG------GTGTACAGTG-TAGATCAGAG-TGTACTG------GACACTGC---AGAGACAACAAGTCC-TGTAATCACACCACTGGACGATGTGACTATGGCTGTGACAATGGATGGA-CGGG-GATACATTGTAACACAC-GT-AAGTCACTTGTCATTGACTT--AAAA------AAACA-AATAAA-ATACATCTACTAACTGTAAAACATTCCATAGACAGACATTATT
gi|5 : ACGATTTGCTGGATTTTTCCTCTATGTGTCCAAC-AGTACG-TCAA-----GGGATGAC--GGCCAT---CTTTGTTCCCATGAG-ATACAGACTATGAACGGTACACCA-ACAGAG--AA--CCA--G--ACAATACGT-TGTTCTGTT-----CATGGACG--ATATGTTATTTACTACAA-CGAACGGAAAAG----GCC-GAGT---ATAACCTATCCTGCT-----TATTATTCTAGATACGCAT------T-TAAT------GAACTTTGTGAAGTgtac
gi|7 : tcccggtgcatattatcaGGATTTTCGCTATACGTATCAAAC-ACAACTGACAAGACACAGGGAGAATTGTGTTT---CCACGAC---ACAAACA-AC--AC-AGAG---GC-CACCATACC-CGCCGTTCTTAACGTCACAA-----------TGTCCAGTTCAGCGACGAT-CGTCATCTAC--TACAA-CG------AAAGAC-TACCAG-GA---GTTGTCTACCCTA--------GTGGAAC-AGT--CA-ATACGCATT-CAAT------GAACTGTGCGAGGTggaagttcatggtaggt
gi|3 : GAT-CTATATTTTCTCTA-ATTACGATTTCAGGTTGT-AAAGAATCAGGTGTGTATGGATATAATTGTGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTGCAGGATGGGTGGGAGAGTT--TTGTAATAAACGTAAGATTACACTAACTGATTAACA------ACTTTAT---ACTGCATTTG-------G-ATT--TGGTGTAAATAATATATAGGCTTAT-CAAATAA--ATA---T---------AT-A----TTTTATAGCCTGTCCAGTAGGA-TATTACG------GCCAACAGTG-TAGATCAAAG-TGTACTG------GACACTGC---AGAGACAACAAGTCC-TGTAATCACACCACTGGACGCTGTGACTATGGCTGTGACAATGGATGGA-CAGG-GATACATTGTAACACAC-GT-AAGTCACTTGTCATT-ATCTTCAAGATTTCGAGAACAAAAT-TAAATATATCTACTAACTGTGGAACATTTGATAG--A-----TATTTAGATtgaggtttacggtg
gi|11 : gtttagggtcatatgagTACATT--GATTGTAGGATGTGCAACA-CCGGGCTTTTATGGAGATAATTGCAATAGACAGTGTCCCCAAAC--CTGTCAGGA---GG--GACACTGTGACATAGTTACCGGAAC-CTGTCTGGGGTGTATTCGGGGATACAAAGGACCTCT--CTGCAAACAACGTGAG-T----CT---T--GTTACATGTTTAACTTTcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgagataatattttaccagagtgtcctgcggaatcgtacggtcctgattgtgtgtataactgtagtggacagtgtctaagttccctcccctgtaacaggacaacaggaagttgtgacggcggctgtaatccaggatataccggacaactctgttacaa
gi|6 : cacttatacccgTG--TCCCAACGGATGTCAAGA--TAAACGA---TGTGACATCATC-ACGGGACAATGTCTGGGCTGTACACCAGGAT--ATCAAGGCCTTGGCTGTAATCAAGGTATGTTTAT
gi|10 : tagaatagttaacttattttttttcccttttcatcctcttttcgtttggtcacaattctgagtaaaattgatcgtgaaaaaaatatgtcttacatttacccagggtgtcttgacccaacaacttacggagtgaactgcaaccagcagCTAGATT--T--T-----TAAT---AAA----A-----AAGA--ACA---TT-----------G---TTTTAACAGATTGTCCTG-TGAAGCATTACGTATTGAATGGAAACTG-TA--TTAAA--TGT---G------GACACTGC---GTATCTGACCAGCCA-TGTAACAGAACAACTGGACGATGTGATAATGGTTGTAAAAATCAATGGA-CCGGAGACACA-TGCAAC
gi|9 : aaA----AT-CCGAAAA--AAA------------AATTG----TTTTA--GCCTGTTCCACTGGA-CATTATG------GTGTGAATTGTTCGGGC--AGCTGTAGTC------CACATTGCCTGACAGACA------CG-TGTGACCATGTAACCGGTGTGTGTGTCTCGGGGTGTGATGATGGATACA-AAGG-GCAACGGTGT-ACAGAACGTAAATACACT--AAAA--AT------GAC-----AAA---AATACcgtatgtttcatttcttt
gi|8 : aatacGAGAA--ACA---TTT----------G----TTTTACAGAATGTCCTG-TGAA-TAC--CT------ATGTATTGAA-TGG---AAGG-TGTGTTGCTTGTGGGCACTGT---AAGGATGGCA-GTCCGTGTAATAGGACGACTGGACGATGTGATAATGGCTGTGCTAATCCGTGGATTGGG-GATACATc
gi|2 : gaaaagtgctatcatgaacaaAATGTATA-ATATAAAATGAT--AATAAAAAGTACAAATCTTCAAAGAAATAACCATTTTGT-----AGCCTGCCCCGCTGGAT-A-TTACGG---TGTACAGT---GTAGATCAGAGTGTA------CTGGACA----CTG-C----AG--AGACAACAAGT--CCTGTAATCACACCACTGGACGATGTGACTATGGCTG---TGA--CAAT----GGATGGACGGGGATAC-ATTGTAACAgcaaacgtacgtgacgtaagattga
gi|10 : attttagagatgagacaaagaggacgttttgctgggttttcgctctatgtgtccaattacaactaaaaagagggtatgtactatttacaaaacggacaggagttaccgctgactccagtacactatatgccaacatggacgttacttaattacaaatgaaaaacttttgaaaacttatcctaccgcgcataccaaacaaacacagtgtcactgaattggaagtaactgataacagtaatgtttcacaccattattacattcaagtacatttagtttatgataaatgaggcactttgatatctctacattgcatctttaggctgtcaagaatcaggtgtgtatggatctaactgtgatctaccctgcccaaacaactgtcaggaaaggagatgtgacattgtcaatggaacgtgtttgggttgtactacagggtggacgggggagttttgtaacaaatgtaagattatatttattatatcattcaaatgttgttgatactttgatgTAA--TA-AAA-----AAGAACAT---TGTTTTAA----CAGATTGTCCTGT-GAAG-CATTACG-TATTG-A-------ATGGA---AACTGTATTAAATGTGGACACTGCGTATC----TG--A----CC---AGCCATGTAACAGAACAACTGGACGATGTGATAATGGTTG---TAAcacgtaagtcacttgtcattgacttaaaaaaacaaataaaatacatctactaactgtaaaacattccatagacagacattattgtac
gi|8 : aactagattttCAAGAGAAA---CATTT-GTTTTACAGAATGTCCTGT-GAATAC-CTATG-TATTG-AATGGAAGGTGTGT--TGCT-T-------GTGGGCA----CTGTAAGGATGGCAGT---------CCGTGTAATAGGACGACTGGACGATGTGATAATGGCTGTGCTAATCCGTGGATTGGGGATACATGCAAACGTACGTGACaaatcaatggaccggagacacatgcaaccgtatgtttcatttcttt
gi|3 : gaaaagtgctatcatgaaAAT----ATTTTAC----CAGAGTGTCCTGCGGAAT-C-GTACGGTCCTG-ATTGT---GTGTAT--AACTGTA------GTGGACA----GTGTC----TA--AGTTCCC---TCCCCTGTAACAGGACAACAGGAAGTTGTGACGGCGGCTG---TAATCCA------GGATATACCGGACAAC-TCTGTTACAAgtaagattga
gi|13 : gtttagggtcatatgaggatctatattttctctaattacgatttcaggttgtaaagaatcaggtgtgtatggatataattgtgatctaccctgcccaaacaactgtcaggaattgagatgtgacattgtcaatggaacgtgtttgggttgtactgcaggatgggtgggagagttttgtaataaacgtaagattacactaactgattaacaactttatactgcatttggatttggtgtaaataatatataggcttatcaaataaatatatattttatagcctgtccagtaggatattacggccaacagtgtagatcaaagtgtactggacactgcagagacaacaagtcctgtaatcacaccactggacgctgtgactatggctgtgacaatggatggacagggatacattgtaacacacgtaagtcacttgtcattatcttcaagatttcgagaacaaaattaaatatatctactaactgtggaacatttgatagatatttagatcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgagat----CAGCCTGTTATGAGGGAT-T-CTACGGTCCAA-ACTGT---GTACAT--CAGTGCAACT---GCGAGCA-----TG-C----TG--A-TT---------CATGTGACAAAGAATCGGGGAGGTGTAA--ATGTCTG-------CCT------GGATACAGAGGGGAAT-TATGTGATAA
gi|15 : ATGGTCCTA-ACTGT---GTACAT--GCATGCA------GCGATAA----CTGTC----AG--AATAACA---CAACGTGTGATAAAGCAACAGGAAAGTGT--CAG-AGCTG---TAAACCT------GGGTATATAGGAGATC-TCTGTAACAAa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CCTTCTTTTCGTGGGGTCAATTACTTAATCTGAGTGAGACTGCCTATCAACAGATTTACTATATATATTCCATTGATAACACAGGATGTCCTGACCCAACATTCTATGGAGAGAACTGCGACCAACAATGTCCCGAGGGATGTCAAGAGAAAAGATGCCACATCA
Unaligned ( gi|14 ): TAGCATGTTCAGTGGGCCGGTATGGATTGAATTGTTCAGAGAACTGCAGTTCCCACTGCCGACATGAAAGTAATCATTGTAACCATATAGACGGACATTGTGAACATGGATGTGACGATGGATTCCAAG
Unaligned ( gi|16 ): TCAGGTTCCACAAATGTCGGTTTTGGAAGGTTTTTAGGGTTTTCCTTATACGTCTCAAACACAACCGACAAAACACAGGGAGAATTGTGTT
Unaligned ( gi|17 ): CAACAATGACCCTAACCACAAACAAGTGCATGTAAATA
Unaligned ( gi|18 ): TTCTGATGGTTATAATTTAAAAGGTACATGTTAGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 111 222 111111 111 3333333333333333333 333333333333333333333 1111 333333333333333333 66666666666666666666666666666666 2 3333333 11 1 1 1 111 1 11 222 11 11 111111 1 22222 11 111 2222 222222222 111 8888888888888888888888 11 111111 111111 1 1 111 1 11 4444444 1 1 1111 222222 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 22222 1111 1 11111 777777777777777777 2
lowQualScore : 4 7 1 4 1 1 1 1 6 6 1 0000 1 1 444 2 888 999999 8 8 444 8 3333333333333333333 3 555555555555555555555 1 1 0 1 4444 8 111111111111111111 3 4 1 66666666666666666666666666666666 1 1 0 4 3 22 1 77 4444444 0 66 1 5 5 2 3 3 1 11 1 2 000 3 1 0 3 2 2 3 1 11 9 8 000 11 8 4 0 99 1 4444 22 11 1 1 6 0 0 999999 0 99999 7 1 222 7 3 88 666 8888 999999999 111 2222222222222222222222 00 9 6 999999 1 555 99 6 22 999999 22 6 7 6 11 1 88 3 1 222 99 6 3 3 88 0 6666666 3 4 3333 6 555555 5 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 6 2 55 44 0 0 00 00000 11 1 1 4444 1 0 77777 888888888888888888 3 1 0 22 1 3 0 3 1 0 2 1 0
lowQualScore : . . . . . . . . . . . .... . . ... . ... ...... . . ... . ................... . ..................... . . . . .... . .................. . . . ................................ . . . . . .. . .. ....... . .. . . . . . . . .. . . ... . . . . . . . . .. . . ... .. . . . .. . .... .. .. . . . . . ...... . ..... . . ... . . .. ... .... ......... ... ...................... .. . . ...... . ... .. . .. ...... .. . . . .. . .. . . ... .. . . . .. . ....... . . .... . ...... . ........................................................................................................................... . . . .. .. . . .. ..... .. . . .... . . ..... .................. . . . .. . . . . . . . . .
lowQualScore : 0 3 0 4 0 0 0 0 7 7 0 8888 0 0 000 2 000 222222 0 0 000 0 2222222222222222222 8 666666666666666666666 0 4 8 0 6666 0 666666666666666666 8 6 4 66666666666666666666666666666666 0 4 8 6 7 00 0 33 7777777 7 33 0 5 5 5 3 7 0 77 0 5 222 5 0 0 2 0 0 0 0 00 6 0 444 00 0 6 8 44 0 8888 00 00 0 4 0 8 8 555555 0 88888 3 0 777 3 7 33 333 3333 000000000 777 5555555555555555555555 33 3 7 222222 0 777 22 7 77 222222 77 7 3 7 77 0 22 3 3 333 22 7 2 3 33 7 0000000 3 0 0000 7 333333 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 33 00 2 2 55 00000 88 0 0 8888 4 0 88888 444444444444444444 2 0 0 44 4 8 8 5 0 2 5 0 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAAGGAGGANGGNTAT---CTGTGTT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACCC--CGGATTC----CAGTACAAC---T-TGT---GTCAA---CATGGACGTTACGTNATNTNCTACAA-CGAA------AGACTTACC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCATACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGG-AATTGA--GA-TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGACGGGAGANTT--TTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAGA-AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAA--TA-AAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTTC-CT--CC--C--CGTGTAACAGAACAACAGGAAGATGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
Reference ( family-5496 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACTATTTCATTTTAGAGATGNGACAAAGAGGACGATTTGCTGGGTTTTCGCTNTATGTGTCNAAC-ACAACT-ANAAAGGANGANGGNTAT---CTATGTT---ACGA---GA-ACGG-AC-AGGA---GT-CACCG-ACCN--CGGATTC----CAGTACAAC---T-TGT---GTCAA---CANGGACGTTACGTNATATTTTACAA-CGAA------AGACTTACC-G-GAATAGCCTATCCTGCTG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGCGAAGTGACCGATNNCNGGCAATGTNGTAGTATCACACACCANTGTTACAATTCAAGTACATTTAGTTTATGATAA-ATGAGGCACTNTGNTNTCTCTACATTGCGATTTTAGGNTGT-CAAGAATCGGGCGTGTATGGATATAATTGCGATCTACCCTG--CCCAAACGACTGTCAGG-AAT-GA--GA-TGTGACATCGTCAACGGAAC-GTGTCTGGGTTGTACTNCAGGATGGACGGGGGNNTT--CTGTAATNAACGTAAGATTATACT---TN-TTA-CA---ACTTTATTCAANTGCNNTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCCGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTANAGTGTAGATCAA--AG-TGTACTG------GACACTGCANAGAC-GACAAGTCC-TGTAATCGNACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAGAC-----GAACA-AATANAAATACATCTACTAACTGTGGAACATTCGATAGACAGACATTATTTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTATA-ATATAAAATGAT--AATANAAAGTACAAATCTTCAAGAAAATCATTTTGTCAGANTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTGNATNANTGTA---GCGGACACTG----TCTGAG-----T--CC--C--CGTGTAACAGAACAACNGGACGATGTGACAATGGCTGTAATCCNGGATATACAGGGGAACTNTGTGACAA
gi|1 : TTATAACAATTTCA-----GAGATGAGACAGAGAGGACGTTTTGCTGGTTTTTTGCTCTATGTGTCAAAC-ACAACT-ATAAAGGAGGAAGGGTAT---CTATGTT---ACAA---GA-ACGG-AC-AGGA---GT-TACCG-ACCT--TGGATTT----CAGTACAAC---T-TGT---GTCAAA--CATGGACGTTACATAATATTTTACAA-TGAA------AGACTTGTC-G-GAACAACTTATCCTACCG---GATATGAA--AC-AGCTACA-AT-CG---TCACTGAATTGTGTGAAGTAACCG-TAACAGGTAATATTGT-GT----TACATCATTGT-ACAATTAAAATACATTTAGCTTATGATAA-ACGAGATACTCTACCTTCTCTACATTATGCCTATAGGTTGT-CAAGAATCAGGTGTGTATGGATCAAACTGTGATGTACCCTG--CCCAAACAACTGTCAGG-AATTGA--GA-TGTGACATTGTCAATGGAAC-ATGTTTGGGTTGTACTGCAGGATGGGTGGGAGACTT--TTGTAATAAATGTAAGATTATGCT---TT-TTA-CATGTACTTTATTCAATTATACTTAATACTCTAATT--TG-T-TAA----TTTAAAA----ATCTGAAAA---ACA----TTTCAAT-GACCT-----TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGGTCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACT-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CAAGTAAT--T-CACC--ACAAT-ATCT--AAAAC-----AAATAGAATACATATACATCTACCAACT-----ACATACTATAG--AGAGATTATTT-GATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAA--TA-AAATTTCCAATAAAATCATTTTGTCAGCATGTCTTGCCGAATCCTACGGTCCTGACTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTGAGTTCTCT--CC--C--C-TGTAACAGGACAACAGGAAGTTGTGACGGTGGCTGTAATCCAGGGTATACAGGGCAACTCTGTGACAA
gi|10 : attgaactgagatcattagaaaaattgtaaattaagactaatgattgaaaactgaattttccttctATAAAA----A-----AGA---ACA----TT------G---------TTTTAACAGATTGTCCTG-TGAAGCATTACGTATTGAATGGAAACTGTA--TTAA--A--TGT---G------GACACTGCGTATCT-GACCAGCCA-TGTAACAGAACAACTGGACG-ATGTGATAATGGTTGTAAAAATCAATGGACCGGAGACACA-TGCAAC----CGTATGTTT-CATTT
gi|10 : aactagatttttaAAGAACATTGTTTTAACAGATTGTCCTGTGAAGCATTACG-TATTGAATGGAAACTGTAT-TAAATGT------GGACACTGCGTATCTGA---------CCAGC--CATGTAACAGAACAACTGGACGATGTGATAATGGTTGTAActtt
gi|11 : aactagatttttaataaaaTACATTG--ATTGTAGGATGTGCAACA-CCGGGCTTTTATGGAGATAATTGCAATAGACAGTGTCCCCAAAC--CTGTCAGG-AGG-GA--CACTGTGACATAGTTACCGGAAC-CTGTCTGGGGTGTATTCGGGGATACAAAGGACCTCT--CTGCAAACAACGTGAG-T----CT---TG-TTA-CA---TGTTTAaaatcaatggaccggagacacatgcaaccgtatgtttcatttcttt
gi|13 : cacttatacccgCAGCCTGTTATGAGGGATTCTACGGTCCAAACTG-----TGTACATCAGTGCAACTGCGAGCA-TG-----CTGAT-----T---------CATGTGACA-AAGAATCGGG-GAGGTGTAAATGTCTG----CCTGGATACAGAGGGGAATTATGTGATAAacttt
gi|15 : ATGGTCCTAACTG-----TGTACATGCATGCA---GCGATAACTG----TCAGAA-----TAACA--CAACGTGTGATAAAGCAACAGGA--AAGTGTCAG-AGCTGTAAACCTGGGTATATAGGAGATCTCTGTAACAAa
gi|16 : GGAAGGTTTTTAGGGTTTTCCTTATACGTCTCAAAC-ACAACCGACAAA
gi|2 : tcaggttccacaaatgtcggttttATTTTAGAGATGAGACAAAGAGGACGTTTTGCTGGGTTTTCGCTCTATGTGTCCAATTACAACT-AAAAAG-----AGGGTATGTACTAT-TT---ACAA----A-ACGG-AC-AGGA---GT-TACCG-------CTGACTC----CAGTACA-C---TATAT---GCCAA---CATGGACGTTACTTAAT----TACAAATGAA------AAACTT--T-T-GAA-AACTTATCCTACCGCGCA-TACCAA--AC-AAACACA-GT--G---TCACTGAATTG---GAAGTAACTGATAACAG-TAATGTT------TCACAC--CATTATTACA-TTCAAGTACATTTAGTTTATGATAA-ATGAGGCACTTTGATATCTCTACATTGCATCTTTAGGCTGT-CAAGAATCAGGTGTGTATGGATCTAACTGTGATCTACCCTG--CCCAAACAACTGTCAGGAAAG-GA--GA-TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTACAGGGTGGACGGGGGAGTT--TTGTAACAAATGTAAGATTATATT---TA-TTA-TA------TCATTCAAATGTTGTTGATACTTTGATGAATG-TATAA----TATAAAATG--ATAATAAAAAGTACAAATCTTC-AAA-GAAATAACCATTTTG-TAGCCTGCCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAG--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATTGACTT--AAAA------AAACA-AATA-AAATACATCTACTAACTGTAAAACATTCCATAGACAGACATTATTacacagggagaattgtgtt
gi|3 : GTTTAGGGTCATATGAGGATCTATATTTTCTCTA-ATTACGATTTCAGGTTGT-AAAGAATCAGGTGTGTATGGATATAATTGTGATCTACCCTG--CCCAAACAACTGTCAGG-AATTGA--GA-TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTGCAGGATGGGTGGGAGAGTT--TTGTAATAAACGTAAGATTACACTAACTGATTAACA---ACTTTAT---ACTGCATTTG-------GATT--TGGTGTAAATAATATATAGGCTTATCAAATAA---ATA----T----AT-A---------TTTTA-TAGCCTGTCCAGTAGGA-TATTACG------GCCAACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCTTCAAGATTTCGAGAACA-AAATTAAATATATCTACTAACTGTGGAACATTTGATAGA-------TATTTAGATgtac
gi|3 : AGATAAT-ATTTTACCAGAGTGTCCTGCGGAATCGTACGGTCCTGATTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTAAGTTCCCT--CC--C--C-TGTAACAGGACAACAGGAAGTTGTGACGGCGGCTGTAATCCAGGATATACCGGACAACTCTGTTACAAcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgagataatattttaccagagtgtcctgcggaatcgtacggtcctgattgtgtgtataactgtagtggacagtgtctaagttccctcccctgtaacaggacaacaggaagttgtgacggcggctgtaatccaggatataccggacaactctgttacaa
gi|4 : gtttagggtcatatgaggatctatattttctctaattacgatttcaggttgtaaagaatcaggtgtgtatggatataattgtgatctaccctgcccaaacaactgtcaggaattgagatgtgacattgtcaatggaacgtgtttgggttgtactgcaggatgggtgggagagttttgtaataaacgtaagattacactaactgattaacaactttatactgcatttggatttggtgtaaataatatataggcttatcaaataaatatatattttatagcctgtccagtaggatattacggccaacagtgtagatcaaagtgtactggacactgcagagacaacaagtcctgtaatcacaccactggacgctgtgactatggctgtgacaatggatggacagggatacattgtaacacacgtaagtcacttgtcattatcttcaagatttcgagaacaaaattaaatatatctactaactgtggaacatttgatagatatttagatcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgTTACAACTATTTCATTTTAGAAATGCGACAAAGAGGAAGAATGGCGGGGTTTTCATTGTATCTATCAAAC-ACATCT-AACATTGAGAATGGTTAC---TTGTGCT---ACAA---GG-ACGG-AC-CGGA---TT-TACCT-CCCC--TGGATTT----TAGTATTAC---C-TGT---ATCAAT--CAAGGCCGTTATGTTATATTTTACAA-CGAG------AGA-TTACCGG-GAGTACAGTATCCTGCTG---GTTACGAATTGT-GGAC-----T-T----TGATAGAAATATGTGAAGTGATCG-TTCTTGGCAATGTGGTAGTATCATATATCAATGT
gi|5 : ttgctgatatgcactgcaaacaattacaattctagacagaaccgaattcagACGATTTGCTGGATTTTTCCTCTATGTGTCCAAC-AGTACG-TCAAGGGATGACGGCCAT---CTTTGTTCCCATGA---GATACAG-ACTATGAACGGTACACCA-ACAG--AGAA--C----CAG-ACAATACGT-TGTTCTGTT-----CATGGACGATATGTTATTTACTACAA-CGAACGGAAAAGGC----C-GAGTATAACCTATCCTGCT------TATTAT--TCTAGATACGCAT------TTAATGAACTTTGTGAAGTGaaat
gi|6 : tcccggtgcatattatcaAACTGCAACCAGCAGTG--TCCCAACGGATGTCAAG-A-T-AAACGA-TGTGACATCATC-ACGGGACAATGTCTGGGCTGTACACCAGGAT--ATCAAGGCCTTGGCTGTAATCAAGGTATGTTTATgaagttcatggtaggt
gi|7 : tagaatagttaacttattttttttcccttttcatcctcttttcgtttggtcacaattctgagtaaaattgatcgtgaaaaaaatatgtcttacatttacccagggtgtcttgacccaacaacttacggagtgGGATTTTCGCTATACGTATCAAAC-ACAACT-GACAAGACACAGGGAGAA---TTGTGTTTCCACGACACAA-ACAACAC-AGAG---GC-CACCATACCCGCCG--TTCTTAACGTCACAA--------T---GTCCAGTTCAGCGACGAT-CGTCATCTACTACAA-CGAA------AGAC-TACCAG-GAGTTGTCTACCCTAGTG---G------A--AC-AG--TCA-ATACGCATTCAATGAACTGTGCGAGGT
gi|8 : GAGAA---ACA----TTT-----G---------TTTTA-CAGAATGTCCTG-TGAA-TAC--CT------ATGTATTGAATGGA---A--GG-TGTGTTGCTTGTGGGCACTGTAAGGAT-GGCA-GTCCGTGTAATAGGACGACTGGACG-ATGTGATAATGGCTGTGCTAATCCGTGGATTGGGGATACA-TGCAA----ACGTACG--T-GACtgaggtttacggtg
gi|9 : gaaaagtgctatcatgaacaaA----ATCCGAAAA---AAA--------AATTG---------TTTTA---GCCTGTTCCACTGGA-CATTATG------GTGTGAATTGT---TCGGGCAGCTGTAGTC------CACATTGCCT-GACAGACA---CG-TGTGACCATGTAACCGG-TGTGTGTGTCTCGGGGTGTGATGATGGATACA-AAGGGCAACGGTGT-ACAGAACGTAAA--TACACTgtaagattga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTCTTTTCGTGGGGTCAATTACTTAATCTGAGTGAGACTGCCTATCAACAGATTTACTATATATATTCCATTGATAACACAGGATGTCCTGACCCAACATTCTATGGAGAGAACTGCGACCAACAATGTCCCGAGGGATGTCAAGAGAAAAGATGCCACATCA
Unaligned ( gi|14 ): TAGCATGTTCAGTGGGCCGGTATGGATTGAATTGTTCAGAGAACTGCAGTTCCCACTGCCGACATGAAAGTAATCATTGTAACCATATAGACGGACATTGTGAACATGGATGTGACGATGGATTCCAAG
Unaligned ( gi|17 ): CAACAATGACCCTAACCACAAACAAGTGCATGTAAATA
Unaligned ( gi|18 ): TTCTGATGGTTATAATTTAAAAGGTACATGTTAGC
Alignments
lowQualScore : 2222222 111 111111 111111 111 3333333333333333333 333333333333333333333 222222 2222222222 6666666666666666666666666666666666 1 3333333333 1 1 1 1 11 111 11 111 111111 1 22222 11 111 2222 2222 111 8888888888888888888888 11 111111 111111 1 1 111 1 11 4444444 1 1 1111 44444 1 22222 11 22222 1111 11111 44444444444444
lowQualScore : 1 7 1 1 1 1 0 6 6 1 2222222 1 1 444 6 888888 999999 8 8 444 8 2222222222222222222 3 555555555555555555555 1 1 0 1 9999 8 333333 4444444444 3 1 1111111111111111111111111111111111 1 1 0 3 6 0000000000 7 5 5 1 3 0 1 1 1 2 777 1 1 0 3 222 1 11 3 777 11 444 4 0 99 1 4 1 1 3 3 11 888888 0 99999 7 1 1 7 3 88 666 8888 8888 5555 111 2222222222222222222222 00 9 6 999999 1 555 99 6 22 999999 22 6 7 6 11 1 88 3 1 222 99 6 3 3 88 6666666 3 2 3333 1 66666 5 66666 22 1 22 0 0 00 00000 0 1 4444 1 8 77777 77777777777777 7 3 4444 0 3 1 0 1 0
lowQualScore : . . . . . . . . . . ....... . . ... . ...... ...... . . ... . ................... . ..................... . . . . .... . ...... .......... . . .................................. . . . . . .......... . . . . . . . . . . ... . . . . ... . .. . ... .. ... . . .. . . . . . . .. ...... . ..... . . . . . .. ... .... .... .... ... ...................... .. . . ...... . ... .. . .. ...... .. . . . .. . .. . . ... .. . . . .. ....... . . .... . ..... . ..... .. . .. . . .. ..... . . .... . . ..... .............. . . .... . . . . . .
lowQualScore : 0 3 0 0 0 0 7 7 7 0 8888888 0 0 000 7 999999 222222 0 0 000 0 6666666666666666666 8 666666666666666666666 0 4 8 0 8888 0 000000 4444444444 8 4 4444444444444444444444444444444444 0 4 8 3 7 3333333333 3 5 5 0 3 7 0 0 0 5 888 0 2 0 2 666 0 00 8 000 00 000 6 8 44 0 2 0 2 2 2 55 888888 0 88888 3 0 0 3 7 33 333 3333 0000 6666 777 5555555555555555555555 33 3 7 222222 0 777 22 7 77 222222 77 7 3 7 77 0 22 3 3 333 22 7 2 3 33 0000000 3 0 0000 0 77777 5 55555 77 0 00 2 2 55 00000 8 0 8888 4 8 88888 44444444444444 4 2 8888 8 5 0 2 0 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TG-TT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACC--CCGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAGA-GGG-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTTC-C-CC--CCGTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
Reference ( family-5496 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGANGGNTATCTG-TG-TT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACC--CCGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTACC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCATACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGACGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAGA-AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTTC-CTCC--CCGTGTAACAGAACAACAGGAAGATGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
gi|1 : TTATAACAATTTCA-----GAGATGAGACAGAGAGGACGTTTTGCTGGTTTTTTGCTCTATGTGTCAAAC-ACAACT-ATAAA--GG---AGGAAGGGTATCTA-TG-TT---ACAA---GA-ACGG-AC-AGGA---GT-TACCG-ACC--TTGGATTT----CAGTACAAC---T-TG---TGTCAAA--CATGGACGTTACATAATATTTTACAA-TG------AAAGACTTGTC-G-GAACAACTTATCCTACCG---GATATGAA--AC-AGCTACA-AT-CG---TCACTGAATTGTGTGAAGTAACCG-TAACAGGTAATATTGT-GT-T---ACATCATTGT-ACAATTAAAATACATTTAGCTTATGATAA-ACGAGATACTCTACCTTCTCTACATTATGCCTATAGGTTGT-CAAGAATCAGGTGTGTATGGATCAAACTGTGATGTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-ATGTTTGGGTTGTACTGCAGGATGGGTGGGAGACTTTTGTAATAAATGTAAGATTATGCT---TT-TTA-CATGTACTTTATTCAATTATACTTAATACTCTAATT--TG-T-TAA----TTTAAAA----ATCTGAAAA---ACA----TTTCAAT-GACCT-----TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGGTCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACT-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CAAGTAAT--T-CACC--ACAAT-ATCT--AAAAC-----AAATAGAATACATATACATCTACCAACT-----ACATACTATAGA-GAG-ATTATTT-GATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAATAAAATCATTTTGTCAGCATGTCTTGCCGAATCCTACGGTCCTGACTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTGAGTTCTCTCC--CC-TGTAACAGGACAACAGGAAGTTGTGACGGTGGCTGTAATCCAGGGTATACAGGGCAACTCTGTGACAA
gi|10 : attgaactgagatcattagaaaaattgtaaattaagactaatgattgaaaactgaattttccttctTAATAAAA-----AAGAACATTGTTTTAACAGATTGTCCTGTGAAGCATTACG-TATTGAATGGAAACTGTAT-TAAATGT------GGACACTGCGTATCTGA-------CCAGCCATGTAACAGAACAACTGGACGATGTGATAATGGTTGTAA
gi|10 : aactagattttATAAAA----A-----AGA---ACA----TT------G---------TTTTAACAGATTGTCCTG-TGAAGCATTACGTATTGAATGGAAACTGTA--TTAA--A--TGT---G------GACACTGCGTATCT-GACCAGCCA-TGTAACAGAACAACTGGACG-ATGTGATAATGGTTGTAAAAATCAATGGACCGGAGACACA-TGCAAC----CGTATGTTT-CATTTaaatcaatggaccggagacacatgcaaccgtatgtttcatttcttt
gi|11 : aactagatttttaTACATTG--ATTGTAGGATGTGCAACA-CCGGGCTTTTATGGAGATAATTGCAATAGACAGTGTCCCCAAAC--CTGTCAGGA---GG--GACACTGTGACATAGTTACCGGAAC-CTGTCTGGGGTGTATTCGGGGATACAAAGGACCTCTCTGCAAACAACGTGAG-T----CT---TG-TTA-CA---TGTTTActtt
gi|13 : cacttatacccgCAGCCTGTTATGAGGGATTCTACGGTCCAAACTG-----TGTACATCAGTGCAACTGCGAGCA-TG-----CTGA-TT---------CATGTGACAAAGAATCGGGGAGGTGTAA--ATGTCTG----CCTGGATACAGAGGGGAATTATGTGATAAacttt
gi|15 : ATGGTCCTAACTG-----TGTACATGCATGCA---GCGATAACTG----TCAGAATAA-CACA--ACGTGTGATAAAGCAACAGGAAAGTGT--CAG-AGCTGTAAACCTGGGTATATAGGAGATCTCTGTAACAAa
gi|16 : GGAAGGTTTTTAGGGTTTTCCTTATACGTCTCAAAC-ACAACCGACAAAACAC---AGGGAGAAT---TG-TG-TT-
gi|2 : tcaggttccacaaatgtcggttttATTTTAGAGATGAGACAAAGAGGACGTTTTGCTGGGTTTTCGCTCTATGTGTCCAATTACAACT-AAAAA--G--------AGGGTATGTACTA-TT-T-ACAA----A-ACGG-AC-AGGA---GT-TACCG-------CTGACTC----CAGTACA-C---TATA---TGCCAA---CATGGACGTTACTTAAT----TACAAATG------AAAAACTT--T-T-GAA-AACTTATCCTACCGCGCA-TACCAA--AC-AAACACA-GT--G---TCACTGAATTG---GAAGTAACTGATAACAG-TAATGTT------TCACAC--CATTATTACA-TTCAAGTACATTTAGTTTATGATAA-ATGAGGCACTTTGATATCTCTACATTGCATCTTTAGGCTGT-CAAGAATCAGGTGTGTATGGATCTAACTGTGATCTACCCTG--CCCAAACAACTGTCAGGAAAGGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTACAGGGTGGACGGGGGAGTTTTGTAACAAATGTAAGATTATATT---TA-TTA-TA------TCATTCAAATGTTGTTGATACTTTGATGAATG-TATAA----TATAAAATG--ATAATAAAAAGTACAAATCTTC-AAA-GAAATAACCATTTTG-TAGCCTGCCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAG--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATTGACTT--AAAA------AAACA-AATA-AAATACATCTACTAACTGTAAAACATTCCATAGACAGACATTATT
gi|3 : GTTTAGGGTCATATGAGGATCTATATTTTCTCTA-ATTACGATTTCAGGTTGT-AAAGAATCAGGTGTGTATGGATATAATTGTGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTGCAGGATGGGTGGGAGAGTTTTGTAATAAACGTAAGATTACACTAACTGATTAACA---ACTTTAT---ACTGCATTTG-------GATT--TGGTGTAAATAATATATAGGCTTATCAAATAA---ATA----T----AT-A---------TTTTA-TAGCCTGTCCAGTAGGA-TATTACG------GCCAACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCTTCAAGATTTCGAGAACA-AAATTAAATATATCTACTAACTGTGGAACATTTGATAGA-------TATTTAGATgtac
gi|3 : AGATAAT-ATTTTACCAGAGTGTCCTGCGGAATCGTACGGTCCTGATTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTAAGTTC-CCTC--CCCTGTAACAGGACAACAGGAAGTTGTGACGGCGGCTGTAATCCAGGATATACCGGACAACTCTGTTACAAcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgagataatattttaccagagtgtcctgcggaatcgtacggtcctgattgtgtgtataactgtagtggacagtgtctaagttccctcccctgtaacaggacaacaggaagttgtgacggcggctgtaatccaggatataccggacaactctgttacaa
gi|4 : gtttagggtcatatgaggatctatattttctctaattacgatttcaggttgtaaagaatcaggtgtgtatggatataattgtgatctaccctgcccaaacaactgtcaggaattgagatgtgacattgtcaatggaacgtgtttgggttgtactgcaggatgggtgggagagttttgtaataaacgtaagattacactaactgattaacaactttatactgcatttggatttggtgtaaataatatataggcttatcaaataaatatatattttatagcctgtccagtaggatattacggccaacagtgtagatcaaagtgtactggacactgcagagacaacaagtcctgtaatcacaccactggacgctgtgactatggctgtgacaatggatggacagggatacattgtaacacacgtaagtcacttgtcattatcttcaagatttcgagaacaaaattaaatatatctactaactgtggaacatttgatagatatttagatcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgTTACAACTATTTCATTTTAGAAATGCGACAAAGAGGAAGAATGGCGGGGTTTTCATTGTATCTATCAAAC-ACATCT-AACAT--TG---AGAATGGTTACTTG-TG----CTACAA---GG-ACGG-AC-CGGA---TT-TACCT-CCC--CTGGATTT----TAGTATTAC---C-TG---TATCAAT--CAAGGCCGTTATGTTATATTTTACAA-CG------AGAGA-TTACCGG-GAGTACAGTATCCTGCTG---GTTACGAATTGT-GGAC-----T-T----TGATAGAAATATGTGAAGTGATCG-TTCTTGGCAATGTGGTAGTATCATATATCAATGT
gi|5 : ttgctgatatgcactgcaaacaattacaattctagacagaaccgaattcagACGATTTGCTGGATTTTTCCTCTATGTGTCCAAC-AGTACG-TCAAG--GG---ATGACGGCCATCTT-TG-TTCCCATGA---GATACAG-ACTATGAACGGTACACCA-ACA--GAGAA--C----CAG-ACAATACGT-TGTTCTGTT-----CATGGACGATATGTTATTTACTACAA-CGAACGGAAAAG----GCC-GAGTATAACCTATCCTGCT------TATTAT--TCTAGATACGCAT------TTAATGAACTTTGTGAAGTGaaat
gi|6 : tcccggtgcatattatcaTACGGAGTGAACTGCAACCAGCAGTG--TCCCAACGGATGTCAAGA--TAAACGA---TGTGACATCATC-ACGGGACAATGTCTGGGCTGTACACCAGGATgaagttcatggtaggt
gi|7 : tagaatagttaacttattttttttcccttttcatcctcttttcgtttggtcacaattctgagtaaaattgatcgtgaaaaaaatatgtcttacatttacccagggtgtcttgacccaacaactGGATTTTCGCTATACGTATCAAAC-ACAACT-GACAA--GACACAGGGAGAAT---TG-TGTTT-CCACGACACAA-ACAACAC-AGAG---GC-CACCATACCCGCCG--TTCTTAACGTCACAA-----------TGTCCAGTTCAGCGACGAT-CGTCATCTACTACAA-CG------AAAGAC-TACCAG-GAGTTGTCTACCCTA------G-T--GGA--AC-AG--TCA-ATACGCATTCAATGAACTGTGCGAGGTatcaaggccttggctgtaatcaaggtatgtttat
gi|8 : GAGAA---ACA----TTT-----G---------TTTTA-CAGAATGTCCTG-TGAA-TAC--CT------ATGTATTGAATGGA---A--GG-TGTGTTGCTTGTGGGCACTGTAAGGAT-GGCA-GTCCGTGTAATAGGACGACTGGACG-ATGTGATAATGGCTGTGCTAATCCGTGGATTGGGGATACA-TGCAA----ACGTACG--T-GACtgaggtttacggtg
gi|9 : gaaaagtgctatcatgaacaaA----ATCCGAAAA---AAA--------AATTG---------TTTTA---GCCTGTTCCACTGGA-CATTATG------GTGTGAATTGT---TCGGGCAGCTGTAGTC------CACATTGCCT-GACAGACA---CG-TGTGACCATGTAACCGG-TGTGTGTGTCTCGGGGTGTGATGATGGATACA-AAGGGCAACGGTGT-ACAGAACGTAAA--TACACTgtaagattga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTCTTTTCGTGGGGTCAATTACTTAATCTGAGTGAGACTGCCTATCAACAGATTTACTATATATATTCCATTGATAACACAGGATGTCCTGACCCAACATTCTATGGAGAGAACTGCGACCAACAATGTCCCGAGGGATGTCAAGAGAAAAGATGCCACATCA
Unaligned ( gi|14 ): TAGCATGTTCAGTGGGCCGGTATGGATTGAATTGTTCAGAGAACTGCAGTTCCCACTGCCGACATGAAAGTAATCATTGTAACCATATAGACGGACATTGTGAACATGGATGTGACGATGGATTCCAAG
Unaligned ( gi|17 ): CAACAATGACCCTAACCACAAACAAGTGCATGTAAATA
Unaligned ( gi|18 ): TTCTGATGGTTATAATTTAAAAGGTACATGTTAGC
Alignments
lowQualScore : 2222222 111 111111 111111 111 3333333333333333333 333333333333333333333 222222 2222222222 6666666666666666666666666666666666 1 3333333333 1 1 1 1 11 111 11 111 111111 1 22222 11 111 2222 2222 111 8888888888888888888888 11 111111 111111 1 1 111 1 11 4444444 1 1 1111 333333 1 22222 11 22222 1111 11111 44444444444
lowQualScore : 1 7 1 1 1 1 0 6 6 1 2222222 1 444 6 888888 999999 8 8 444 8 2222222222222222222 3 555555555555555555555 1 1 0 1 9999 8 333333 4444444444 3 1 1111111111111111111111111111111111 1 1 0 3 6 0000000000 7 5 5 1 3 0 1 1 1 2 777 1 1 0 3 222 1 11 3 777 11 444 4 0 99 1 4 1 1 3 3 11 888888 0 99999 7 1 1 7 3 88 666 8888 8888 5555 111 2222222222222222222222 00 9 6 999999 1 555 99 6 22 999999 22 6 7 6 11 1 88 3 1 222 99 6 6 3 88 6666666 3 2 3333 1 111111 5 66666 22 1 22 0 0 00 00000 0 1 4444 1 8 77777 22222222222 6 1 3 4444 0 3 1 0 1 0
lowQualScore : . . . . . . . . . . ....... . ... . ...... ...... . . ... . ................... . ..................... . . . . .... . ...... .......... . . .................................. . . . . . .......... . . . . . . . . . . ... . . . . ... . .. . ... .. ... . . .. . . . . . . .. ...... . ..... . . . . . .. ... .... .... .... ... ...................... .. . . ...... . ... .. . .. ...... .. . . . .. . .. . . ... .. . . . .. ....... . . .... . ...... . ..... .. . .. . . .. ..... . . .... . . ..... ........... . . . .... . . . . . .
lowQualScore : 0 3 0 0 0 0 7 7 7 0 8888888 0 000 7 999999 222222 0 0 000 0 6666666666666666666 8 666666666666666666666 0 4 8 0 8888 0 000000 0000000000 8 4 4444444444444444444444444444444444 0 4 8 3 7 0000000000 3 5 5 0 3 7 0 0 0 5 888 0 2 0 2 666 0 00 8 000 00 000 6 8 44 0 2 0 2 2 2 55 888888 0 88888 3 0 0 3 7 33 333 3333 0000 6666 777 5555555555555555555555 33 3 7 222222 0 777 22 7 77 222222 77 7 3 7 77 0 22 3 3 333 22 7 7 3 33 0000000 3 0 0000 0 777777 5 55555 77 0 00 2 2 55 00000 8 0 8888 4 8 88888 22222222222 4 0 2 8888 8 5 0 2 0 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TG-TT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACC--CCGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTTC-CN-CC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
Reference ( family-5496 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TG-TT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACC--CCGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGGGATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTTC-CC-CC-CGTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
gi|1 : TTATAACAATTTCA-----GAGATGAGACAGAGAGGACGTTTTGCTGGTTTTTTGCTCTATGTGTCAAAC-ACAACT-ATAAA--GG---AGGAAGGGTATCTA-TG-TT---ACAA---GA-ACGG-AC-AGGA---GT-TACCG-ACC--TTGGATTT----CAGTACAAC---T-TG---TGTCAAA--CATGGACGTTACATAATATTTTACAA-TG------AAAGACTTGTC-G-GAACAACTTATCCTACCG---GATATGAA--AC-AGCTACA-AT-CG---TCACTGAATTGTGTGAAGTAACCG-TAACAGGTAATATTGT-GT-T---ACATCATTGT-ACAATTAAAATACATTTAGCTTATGATAA-ACGAGATACTCTACCTTCTCTACATTATGCCTATAGGTTGT-CAAGAATCAGGTGTGTATGGATCAAACTGTGATGTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-ATGTTTGGGTTGTACTGCAGGATGGGTGGGAGACTTTTGTAATAAATGTAAGATTATGCT---TT-TTA-CATGTACTTTATTCAATTATACTTAATACTCTAATT--TG-T-TAA----TTTAAAA----ATCTGAAAA---ACA----TTTCAAT-GACCT-----TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGGTCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACT-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CAAGTAAT--T-CACCA--CAAT-ATCT--AAAAC-----AAATAGAATACATATACATCTACCAACT-----ACATACTATAG--AGAGATTATTT-GATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAATAAAATCATTTTGTCAGCATGTCTTGCCGAATCCTACGGTCCTGACTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTGAGTTCTCT-CC-CCTGTAACAGGACAACAGGAAGTTGTGACGGTGGCTGTAATCCAGGGTATACAGGGCAACTCTGTGACAA
gi|10 : attgaactgagatcattagaaaaattgtaaattaagactaatgattgaaaactgaattttccttctTAATAAAA-----AAGAACATTGTTTTAACAGATTGTCCTGTGAAGCATTACG-TATTGAATGGAAACTGTAT-TAAATGT------GGACACTGCGTATCTGA---C-CA-GC-CATGTAACAGAACAACTGGACGATGTGATAATGGTTGTAA
gi|10 : aactagattttATAAAA----A-----AGA---ACA----TT------G---------TTTTAACAGATTGTCCTG-TGAAGCATTACGTATTGAATGGAAACTGTA--TTAA--A--TGT---G------GACACTGCGTATCT-GACCAGCCA-TGTAACAGAACAACTGGACG-ATGTGATAATGGTTGTAAAAATCAATGGACCGGAGACACA-TGCAAC----CGTATGTTT-CATTTaaatcaatggaccggagacacatgcaaccgtatgtttcatttcttt
gi|11 : aactagatttttaTACATTG--ATTGTAGGATGTGCAACA-CCGGGCTTTTATGGAGATAATTGCAATAGACAGTGTCCCCAAAC--CTGTCAGGA---GG--GACACTGTGACATAGTTACCGGAAC-CTGTCTGGGGTGTATTCGGGGATACAAAGGACCTCTCTGCAAACAACGTGAG-T----CT---TG-TTA-CA---TGTTTActtt
gi|13 : cacttatacccgCAGCCTGTTATGAGGGATTCTACGGTCCAAACTG-----TGTACATCAGTGCAACTGCGAGCA-TG-----CTGA-TT--------CATGTGACAAAGAATCGGGGAGGTGTAA--ATGTCTG----CCTGGATACAGAGGGGAATTATGTGATAAacttt
gi|15 : ATGGTCCTAACTG-----TGTACATGCATGCA---GCGATAACTG----TCAGAATAA-CA-CAACGTGTGATAAAGCAACAGGAAAGTGT--CAG-AGCTGTAAACCTGGGTATATAGGAGATCTCTGTAACAAa
gi|16 : GGAAGGTTTTTAGGGTTTTCCTTATACGTCTCAAAC-ACAACCGACAAAACAC---AGGGAGAAT---TG-TG-TT-
gi|2 : tcaggttccacaaatgtcggttttATTTTAGAGATGAGACAAAGAGGACGTTTTGCTGGGTTTTCGCTCTATGTGTCCAATTACAACT-AAAAA--G--------AGGGTATGTACTA-TT-T-ACAA----A-ACGG-AC-AGGA---GT-TACCG-------CTGACTC----CAGTACA-C---TATA---TGCCAA---CATGGACGTTACTTAAT----TACAAATG------AAAAACTTTT----GAA-AACTTATCCTACCGCGCA-TACCAA--AC-AAACACA-GT--G---TCACTGAATTG---GAAGTAACTGATAACAG-TAATGTT------TCACAC--CATTATTACA-TTCAAGTACATTTAGTTTATGATAA-ATGAGGCACTTTGATATCTCTACATTGCATCTTTAGGCTGT-CAAGAATCAGGTGTGTATGGATCTAACTGTGATCTACCCTG--CCCAAACAACTGTCAGGAAAGGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTACAGGGTGGACGGGGGAGTTTTGTAACAAATGTAAGATTATATT---TA-TTA-TA------TCATTCAAATGTTGTTGATACTTTGATGAATG-TATAA----TATAAAATG--ATAATAAAAAGTACAAATCTTC-AAA-GAAATAACCATTTTG-TAGCCTGCCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAG--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATTGACTT--AAAA------AAACA-AATA-AAATACATCTACTAACTGTAAAACATTCCATAGACAGACATTATT
gi|3 : GTTTAGGGTCATATGAGGATCTATATTTTCTCTA-ATTACGATTTCAGGTTGT-AAAGAATCAGGTGTGTATGGATATAATTGTGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTGCAGGATGGGTGGGAGAGTTTTGTAATAAACGTAAGATTACACTAACTGATTAACA---ACTTTAT---ACTGCATTTG-------GATT--TGGTGTAAATAATATATAGGCTTATCAAATAA---ATA----T----AT-A---------TTTTA-TAGCCTGTCCAGTAGGA-TATTACG------GCCAACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCTTCAAGATTTCGAGAACA-AAATTAAATATATCTACTAACTGTGGAACATTTGATAG--A-----TATTTAGATgtac
gi|3 : AGATAAT-ATTTTACCAGAGTGTCCTGCGGAATCGTACGGTCCTGATTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTAAGTTC-CCTCC-CCTGTAACAGGACAACAGGAAGTTGTGACGGCGGCTGTAATCCAGGATATACCGGACAACTCTGTTACAAcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgagataatattttaccagagtgtcctgcggaatcgtacggtcctgattgtgtgtataactgtagtggacagtgtctaagttccctcccctgtaacaggacaacaggaagttgtgacggcggctgtaatccaggatataccggacaactctgttacaa
gi|4 : gtttagggtcatatgaggatctatattttctctaattacgatttcaggttgtaaagaatcaggtgtgtatggatataattgtgatctaccctgcccaaacaactgtcaggaattgagatgtgacattgtcaatggaacgtgtttgggttgtactgcaggatgggtgggagagttttgtaataaacgtaagattacactaactgattaacaactttatactgcatttggatttggtgtaaataatatataggcttatcaaataaatatatattttatagcctgtccagtaggatattacggccaacagtgtagatcaaagtgtactggacactgcagagacaacaagtcctgtaatcacaccactggacgctgtgactatggctgtgacaatggatggacagggatacattgtaacacacgtaagtcacttgtcattatcttcaagatttcgagaacaaaattaaatatatctactaactgtggaacatttgatagatatttagatcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgTTACAACTATTTCATTTTAGAAATGCGACAAAGAGGAAGAATGGCGGGGTTTTCATTGTATCTATCAAAC-ACATCT-AACAT--TG---AGAATGGTTACTTG-TG----CTACAA---GG-ACGG-AC-CGGA---TT-TACCT-CCC--CTGGATTT----TAGTATTAC---C-TG---TATCAAT--CAAGGCCGTTATGTTATATTTTACAA-CG------AGAGA-TTACCGG-GAGTACAGTATCCTGCTG---GTTACGAATTGT-GGAC-----T-T----TGATAGAAATATGTGAAGTGATCG-TTCTTGGCAATGTGGTAGTATCATATATCAATGT
gi|5 : ttgctgatatgcactgcaaacaattacaattctagacagaaccgaattcagACGATTTGCTGGATTTTTCCTCTATGTGTCCAAC-AGTACG-TCAAG--GG---ATGACGGCCATCTT-TG-TTCCCATGA---GATACAG-ACTATGAACGGTACACCA-ACA--GAGAA--C----CAG-ACAATACGT-TGTTCTGTT-----CATGGACGATATGTTATTTACTACAA-CGAACGGAAAAG----GCC-GAGTATAACCTATCCTGCT------TATTAT--TCTAGATACGCAT------TTAATGAACTTTGTGAAGTGaaat
gi|6 : tcccggtgcatattatcaTACGGAGTGAACTGCAACCAGCAGTG--TCCCAACGGATGTCAAGA--TAAACGA---TGTGACATCATC-ACGGGACAATGTCTGGGCTGTACACCAGGATgaagttcatggtaggt
gi|7 : tagaatagttaacttattttttttcccttttcatcctcttttcgtttggtcacaattctgagtaaaattgatcgtgaaaaaaatatgtcttacatttacccagggtgtcttgacccaacaactGGATTTTCGCTATACGTATCAAAC-ACAACT-GACAA--GACACAGGGAGAAT---TG-TGTTT-CCACGACACAA-ACAACAC-AGAG---GC-CACCATACCCGCCG--TTCTTAACGTCACAA-----------TGTCCAGTTCAGCGACGAT-CGTCATCTACTACAA-CG------AAAGAC-TACCAG-GAGTTGTCTACCCTA------G-T--GGA--AC-AG--TCA-ATACGCATTCAATGAACTGTGCGAGGTatcaaggccttggctgtaatcaaggtatgtttat
gi|8 : GAGAA---ACA----TTT-----G---------TTTTA-CAGAATGTCCTG-TGAA-TAC--CT------ATGTATTGAATGGA---A--GG-TGTGTTGCTTGTGGGCACTGTAAGGAT-GGCA-GTCCGTGTAATAGGACGACTGGACG-ATGTGATAATGGCTGTGCTAATCCGTGGATTGGGGATACA-TGCAA----ACGTACG--T-GACtgaggtttacggtg
gi|9 : gaaaagtgctatcatgaacaaA----ATCCGAAAA---AAA--------AATTG---------TTTTA---GCCTGTTCCACTGGA-CATTATG------GTGTGAATTGT---TCGGGCAGCTGTAGTC------CACATTGCCT-GACAGACA---CG-TGTGACCATGTAACCGG-TGTGTGTGTCTCGGGGTGTGATGATGGATACA-AAGGGCAACGGTGT-ACAGAACGTAAA--TACACTgtaagattga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTCTTTTCGTGGGGTCAATTACTTAATCTGAGTGAGACTGCCTATCAACAGATTTACTATATATATTCCATTGATAACACAGGATGTCCTGACCCAACATTCTATGGAGAGAACTGCGACCAACAATGTCCCGAGGGATGTCAAGAGAAAAGATGCCACATCA
Unaligned ( gi|14 ): TAGCATGTTCAGTGGGCCGGTATGGATTGAATTGTTCAGAGAACTGCAGTTCCCACTGCCGACATGAAAGTAATCATTGTAACCATATAGACGGACATTGTGAACATGGATGTGACGATGGATTCCAAG
Unaligned ( gi|17 ): CAACAATGACCCTAACCACAAACAAGTGCATGTAAATA
Unaligned ( gi|18 ): TTCTGATGGTTATAATTTAAAAGGTACATGTTAGC
Alignments
lowQualScore : 2222222 111 222 111111 111 3333333333333333333 333333333333333333333 222222 2222222222 6666666666666666666666666666666666 1 3333333333 1 1 1 1 11 111 11 111 111111 1 22222 11 111 2222 2222 111 8888888888888888888888 11 111111 111111 1 1 111 1 11 4444444 1 1 1111 444444 1 22222 11 22222 1111 11111 33333333333
lowQualScore : 1 7 1 1 1 1 0 6 6 1 2222222 1 444 6 444 999999 8 8 444 8 2222222222222222222 3 555555555555555555555 1 1 0 1 9999 8 333333 4444444444 3 1 1111111111111111111111111111111111 1 1 0 3 6 0000000000 7 5 5 1 3 0 1 1 1 2 777 1 1 0 3 222 1 11 3 777 11 444 4 0 99 1 4 1 1 3 3 11 888888 0 99999 7 1 1 7 3 88 666 8888 8888 5555 111 2222222222222222222222 00 9 6 999999 1 555 99 6 22 999999 22 6 7 6 11 1 88 3 1 222 99 6 3 3 88 6666666 3 2 3333 1 111111 5 66666 22 1 22 0 0 00 00000 0 1 4444 1 8 77777 77777777777 1 1 3 4444 0 3 1 0 1 0
lowQualScore : . . . . . . . . . . ....... . ... . ... ...... . . ... . ................... . ..................... . . . . .... . ...... .......... . . .................................. . . . . . .......... . . . . . . . . . . ... . . . . ... . .. . ... .. ... . . .. . . . . . . .. ...... . ..... . . . . . .. ... .... .... .... ... ...................... .. . . ...... . ... .. . .. ...... .. . . . .. . .. . . ... .. . . . .. ....... . . .... . ...... . ..... .. . .. . . .. ..... . . .... . . ..... ........... . . . .... . . . . . .
lowQualScore : 0 3 0 0 0 0 7 7 7 0 8888888 0 000 7 777 222222 0 0 000 0 6666666666666666666 8 666666666666666666666 0 4 8 0 8888 0 000000 0000000000 8 4 4444444444444444444444444444444444 0 4 8 3 7 0000000000 3 5 5 0 3 7 0 0 0 5 888 0 2 0 2 666 0 00 8 000 00 000 6 8 44 0 2 0 2 2 2 55 888888 0 88888 3 0 0 3 7 33 333 3333 0000 6666 777 5555555555555555555555 33 3 7 222222 0 777 22 7 77 222222 77 7 3 7 77 0 22 3 3 333 22 7 2 3 33 0000000 3 0 0000 0 777777 5 55555 77 0 00 2 2 55 00000 8 0 8888 4 8 88888 88888888888 0 0 2 8888 8 5 0 2 0 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TGTT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACCC--CGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTT-C-CNCC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
Reference ( family-5496 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TGTT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACCC--CGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTT-C-CNCC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
gi|1 : TTATAACAATTTCA-----GAGATGAGACAGAGAGGACGTTTTGCTGGTTTTTTGCTCTATGTGTCAAAC-ACAACT-ATAAA--GG---AGGAAGGGTATCTA-TGTT---ACAA---GA-ACGG-AC-AGGA---GT-TACCG-ACCT--TGGATTT----CAGTACAAC---T-TG---TGTCAAA--CATGGACGTTACATAATATTTTACAA-TG------AAAGACTTGTC-G-GAACAACTTATCCTACCG---GATATGAA--AC-AGCTACA-AT-CG---TCACTGAATTGTGTGAAGTAACCG-TAACAGGTAATATTGT-GT-T---ACATCATTGT-ACAATTAAAATACATTTAGCTTATGATAA-ACGAGATACTCTACCTTCTCTACATTATGCCTATAGGTTGT-CAAGAATCAGGTGTGTATGGATCAAACTGTGATGTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-ATGTTTGGGTTGTACTGCAGGATGGGTGGGAGACTTTTGTAATAAATGTAAGATTATGCT---TT-TTA-CATGTACTTTATTCAATTATACTTAATACTCTAATT--TG-T-TAA----TTTAAAA----ATCTGAAAA---ACA----TTTCAAT-GACCT-----TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGGTCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACT-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CAAGTAAT--T-CACC--ACAAT-ATCT--AAAAC-----AAATAGAATACATATACATCTACCAACT-----ACATACTATAG--AGAGATTATTT-GATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAATAAAATCATTTTGTCAGCATGTCTTGCCGAATCCTACGGTCCTGACTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTGAGTT-CTCTCC-CCTGTAACAGGACAACAGGAAGTTGTGACGGTGGCTGTAATCCAGGGTATACAGGGCAACTCTGTGACAA
gi|10 : attgaactgagatcattagaaaaattgtaaattaagactaatgattgaaaactgaattttccttctTAATAAAA-----AAGAACATTGTTTTAACAGATTGTCCTGTGAAGCATTACG-TATTGAATGGAAACTGTAT-TAAATGT------GGACACTGCGTATCTGA----C-CAGC-CATGTAACAGAACAACTGGACGATGTGATAATGGTTGTAA
gi|10 : aactagattttATAAAA----A-----AGA---ACA----TT------G---------TTTTAACAGATTGTCCTG-TGAAGCATTACGTATTGAATGGAAACTGTA--TTAA--A--TGT---G------GACACTGCGTATCT-GACCAGCCA-TGTAACAGAACAACTGGACG-ATGTGATAATGGTTGTAAAAATCAATGGACCGGAGACACA-TGCAAC----CGTATGTTT-CATTTaaatcaatggaccggagacacatgcaaccgtatgtttcatttcttt
gi|11 : aactagatttttaTACATTG--ATTGTAGGATGTGCAACA-CCGGGCTTTTATGGAGATAATTGCAATAGACAGTGTCCCCAAAC--CTGTCAGGA---GG--GACACTGTGACATAGTTACCGGAAC-CTGTCTGGGGTGTATTCGGGGATACAAAGGACCTCTCTGCAAACAACGTGAG-T----CT---TG-TTA-CA---TGTTTActtt
gi|13 : cacttatacccgCAGCCTGTTATGAGGGATTCTACGGTCCAAACTG-----TGTACATCAGTGCAACTGCGAGCA-TG-----CTGA-TT--------CATGTGACAAAGAATCGGGGAGGTGTAA--ATGTCTG----CCTGGATACAGAGGGGAATTATGTGATAAacttt
gi|15 : ATGGTCCTAACTG-----TGTACATGCATGCA---GCGATAACTG----TCAGAATA-A-CACAACGTGTGATAAAGCAACAGGAAAGTGT--CAG-AGCTGTAAACCTGGGTATATAGGAGATCTCTGTAACAAa
gi|16 : GGAAGGTTTTTAGGGTTTTCCTTATACGTCTCAAAC-ACAACCGACAAAACAC---AGGGAGAAT---TG-TGTT-
gi|2 : tcaggttccacaaatgtcggttttATTTTAGAGATGAGACAAAGAGGACGTTTTGCTGGGTTTTCGCTCTATGTGTCCAATTACAACT-AAAAA--G--------AGGGTATGTACTATT-T-ACAA----A-ACGG-AC-AGGA---GT-TACCG-------CTGACTC----CAGTACA-C---TATA---TGCCAA---CATGGACGTTACTTAAT----TACAAATG------AAAAACTTTT----GAA-AACTTATCCTACCGCGCA-TACCAA--AC-AAACACA-GT--G---TCACTGAATTG---GAAGTAACTGATAACAG-TAATGTT------TCACAC--CATTATTACA-TTCAAGTACATTTAGTTTATGATAA-ATGAGGCACTTTGATATCTCTACATTGCATCTTTAGGCTGT-CAAGAATCAGGTGTGTATGGATCTAACTGTGATCTACCCTG--CCCAAACAACTGTCAGGAAAGGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTACAGGGTGGACGGGGGAGTTTTGTAACAAATGTAAGATTATATT---TA-TTA-TA------TCATTCAAATGTTGTTGATACTTTGATGAATG-TATAA----TATAAAATG--ATAATAAAAAGTACAAATCTTC-AAA-GAAATAACCATTTTG-TAGCCTGCCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAG--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATTGACTT--AAAA------AAACA-AATA-AAATACATCTACTAACTGTAAAACATTCCATAGACAGACATTATT
gi|3 : GTTTAGGGTCATATGAGGATCTATATTTTCTCTA-ATTACGATTTCAGGTTGT-AAAGAATCAGGTGTGTATGGATATAATTGTGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTGCAGGATGGGTGGGAGAGTTTTGTAATAAACGTAAGATTACACTAACTGATTAACA---ACTTTAT---ACTGCATTTG-------GATT--TGGTGTAAATAATATATAGGCTTATCAAATAA---ATA----T----AT-A---------TTTTA-TAGCCTGTCCAGTAGGA-TATTACG------GCCAACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCTTCAAGATTTCGAGAACA-AAATTAAATATATCTACTAACTGTGGAACATTTGATAG--A-----TATTTAGATgtac
gi|3 : AGATAAT-ATTTTACCAGAGTGTCCTGCGGAATCGTACGGTCCTGATTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTAAGTTCC-CTCC-CCTGTAACAGGACAACAGGAAGTTGTGACGGCGGCTGTAATCCAGGATATACCGGACAACTCTGTTACAAcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgagataatattttaccagagtgtcctgcggaatcgtacggtcctgattgtgtgtataactgtagtggacagtgtctaagttccctcccctgtaacaggacaacaggaagttgtgacggcggctgtaatccaggatataccggacaactctgttacaa
gi|4 : gtttagggtcatatgaggatctatattttctctaattacgatttcaggttgtaaagaatcaggtgtgtatggatataattgtgatctaccctgcccaaacaactgtcaggaattgagatgtgacattgtcaatggaacgtgtttgggttgtactgcaggatgggtgggagagttttgtaataaacgtaagattacactaactgattaacaactttatactgcatttggatttggtgtaaataatatataggcttatcaaataaatatatattttatagcctgtccagtaggatattacggccaacagtgtagatcaaagtgtactggacactgcagagacaacaagtcctgtaatcacaccactggacgctgtgactatggctgtgacaatggatggacagggatacattgtaacacacgtaagtcacttgtcattatcttcaagatttcgagaacaaaattaaatatatctactaactgtggaacatttgatagatatttagatcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgTTACAACTATTTCATTTTAGAAATGCGACAAAGAGGAAGAATGGCGGGGTTTTCATTGTATCTATCAAAC-ACATCT-AACAT--TG---AGAATGGTTACTTG-TG---CTACAA---GG-ACGG-AC-CGGA---TT-TACCT-CCCC--TGGATTT----TAGTATTAC---C-TG---TATCAAT--CAAGGCCGTTATGTTATATTTTACAA-CG------AGAGA-TTACCGG-GAGTACAGTATCCTGCTG---GTTACGAATTGT-GGAC-----T-T----TGATAGAAATATGTGAAGTGATCG-TTCTTGGCAATGTGGTAGTATCATATATCAATGT
gi|5 : ttgctgatatgcactgcaaacaattacaattctagacagaaccgaattcagACGATTTGCTGGATTTTTCCTCTATGTGTCCAAC-AGTACG-TCAAG--GG---ATGACGGCCATCTT-TGTTCCCATGA---GATACAG-ACTATGAACGGTACACCA-ACAG--AGAA--C----CAG-ACAATACGT-TGTTCTGTT-----CATGGACGATATGTTATTTACTACAA-CGAACGGAAAAG----GCC-GAGTATAACCTATCCTGCT------TATTAT--TCTAGATACGCAT------TTAATGAACTTTGTGAAGTGaaat
gi|6 : tcccggtgcatattatcaTACGGAGTGAACTGCAACCAGCAGTG--TCCCAACGGATGTCAAGA--TAAACGA---TGTGACATCATC-ACGGGACAATGTCTGGGCTGTACACCAGGATgaagttcatggtaggt
gi|7 : tagaatagttaacttattttttttcccttttcatcctcttttcgtttggtcacaattctgagtaaaattgatcgtgaaaaaaatatgtcttacatttacccagggtgtcttgacccaacaactGGATTTTCGCTATACGTATCAAAC-ACAACT-GACAA--GACACAGGGAGAAT---TG-TGTTTCCACGACACAA-ACAACAC-AGAG---GC-CACCATACCCGCCG--TTCTTAACGTCACAA-----------TGTCCAGTTCAGCGACGAT-CGTCATCTACTACAA-CG------AAAGAC-TACCAG-GAGTTGTCTACCCTA------G-T--GGA--AC-AG--TCA-ATACGCATTCAATGAACTGTGCGAGGTatcaaggccttggctgtaatcaaggtatgtttat
gi|8 : GAGAA---ACA----TTT-----G---------TTTTA-CAGAATGTCCTG-TGAA-TAC--CT------ATGTATTGAATGGA---A--GG-TGTGTTGCTTGTGGGCACTGTAAGGAT-GGCA-GTCCGTGTAATAGGACGACTGGACG-ATGTGATAATGGCTGTGCTAATCCGTGGATTGGGGATACA-TGCAA----ACGTACG--T-GACtgaggtttacggtg
gi|9 : gaaaagtgctatcatgaacaaA----ATCCGAAAA---AAA--------AATTG---------TTTTA---GCCTGTTCCACTGGA-CATTATG------GTGTGAATTGT---TCGGGCAGCTGTAGTC------CACATTGCCT-GACAGACA---CG-TGTGACCATGTAACCGG-TGTGTGTGTCTCGGGGTGTGATGATGGATACA-AAGGGCAACGGTGT-ACAGAACGTAAA--TACACTgtaagattga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTCTTTTCGTGGGGTCAATTACTTAATCTGAGTGAGACTGCCTATCAACAGATTTACTATATATATTCCATTGATAACACAGGATGTCCTGACCCAACATTCTATGGAGAGAACTGCGACCAACAATGTCCCGAGGGATGTCAAGAGAAAAGATGCCACATCA
Unaligned ( gi|14 ): TAGCATGTTCAGTGGGCCGGTATGGATTGAATTGTTCAGAGAACTGCAGTTCCCACTGCCGACATGAAAGTAATCATTGTAACCATATAGACGGACATTGTGAACATGGATGTGACGATGGATTCCAAG
Unaligned ( gi|17 ): CAACAATGACCCTAACCACAAACAAGTGCATGTAAATA
Unaligned ( gi|18 ): TTCTGATGGTTATAATTTAAAAGGTACATGTTAGC
Alignments
lowQualScore : 2222222 111 222 111111 111 3333333333333333333 333333333333333333333 222222 2222222222 6666666666666666666666666666666666 1 3333333333 1 1 1 1 11 111 11 111 111111 1 22222 11 111 2222 2222 111 8888888888888888888888 11 111111 111111 1 1 111 1 11 4444444 1 1 1111 444444 1 22222 11 22222 1111 11111 33333333333
lowQualScore : 1 7 1 1 1 1 0 6 6 1 2222222 1 444 6 444 999999 8 8 444 8 2222222222222222222 3 555555555555555555555 1 1 0 1 9999 8 333333 4444444444 3 1 1111111111111111111111111111111111 1 1 0 3 6 0000000000 7 5 5 1 3 0 1 1 1 2 777 1 1 0 3 222 1 11 3 777 11 444 4 0 99 1 4 1 1 3 3 11 888888 0 99999 7 1 1 7 3 88 666 8888 8888 5555 111 2222222222222222222222 00 9 6 999999 1 555 99 6 22 999999 22 6 7 6 11 1 88 3 1 222 99 6 3 3 88 6666666 3 2 3333 1 111111 5 66666 22 1 22 0 0 00 00000 0 1 4444 1 8 77777 77777777777 1 1 3 4444 0 3 1 0 1 0
lowQualScore : . . . . . . . . . . ....... . ... . ... ...... . . ... . ................... . ..................... . . . . .... . ...... .......... . . .................................. . . . . . .......... . . . . . . . . . . ... . . . . ... . .. . ... .. ... . . .. . . . . . . .. ...... . ..... . . . . . .. ... .... .... .... ... ...................... .. . . ...... . ... .. . .. ...... .. . . . .. . .. . . ... .. . . . .. ....... . . .... . ...... . ..... .. . .. . . .. ..... . . .... . . ..... ........... . . . .... . . . . . .
lowQualScore : 0 3 0 0 0 0 7 7 7 0 8888888 0 000 7 777 222222 0 0 000 0 6666666666666666666 8 666666666666666666666 0 4 8 0 8888 0 000000 0000000000 8 4 4444444444444444444444444444444444 0 4 8 3 7 0000000000 3 5 5 0 3 7 0 0 0 5 888 0 2 0 2 666 0 00 8 000 00 000 6 8 44 0 2 0 2 2 2 55 888888 0 88888 3 0 0 3 7 33 333 3333 0000 6666 777 5555555555555555555555 33 3 7 222222 0 777 22 7 77 222222 77 7 3 7 77 0 22 3 3 333 22 7 2 3 33 0000000 3 0 0000 0 777777 5 55555 77 0 00 2 2 55 00000 8 0 8888 4 8 88888 88888888888 0 0 2 8888 8 5 0 2 0 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TGTT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACCC--CGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTT-C-CNCC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
Reference ( family-5496 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TGTT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACCC--CGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTT-C-CNCC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
gi|1 : TTATAACAATTTCA-----GAGATGAGACAGAGAGGACGTTTTGCTGGTTTTTTGCTCTATGTGTCAAAC-ACAACT-ATAAA--GG---AGGAAGGGTATCTA-TGTT---ACAA---GA-ACGG-AC-AGGA---GT-TACCG-ACCT--TGGATTT----CAGTACAAC---T-TG---TGTCAAA--CATGGACGTTACATAATATTTTACAA-TG------AAAGACTTGTC-G-GAACAACTTATCCTACCG---GATATGAA--AC-AGCTACA-AT-CG---TCACTGAATTGTGTGAAGTAACCG-TAACAGGTAATATTGT-GT-T---ACATCATTGT-ACAATTAAAATACATTTAGCTTATGATAA-ACGAGATACTCTACCTTCTCTACATTATGCCTATAGGTTGT-CAAGAATCAGGTGTGTATGGATCAAACTGTGATGTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-ATGTTTGGGTTGTACTGCAGGATGGGTGGGAGACTTTTGTAATAAATGTAAGATTATGCT---TT-TTA-CATGTACTTTATTCAATTATACTTAATACTCTAATT--TG-T-TAA----TTTAAAA----ATCTGAAAA---ACA----TTTCAAT-GACCT-----TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGGTCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACT-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CAAGTAAT--T-CACC--ACAAT-ATCT--AAAAC-----AAATAGAATACATATACATCTACCAACT-----ACATACTATAG--AGAGATTATTT-GATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAATAAAATCATTTTGTCAGCATGTCTTGCCGAATCCTACGGTCCTGACTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTGAGTT-CTCTCC-CCTGTAACAGGACAACAGGAAGTTGTGACGGTGGCTGTAATCCAGGGTATACAGGGCAACTCTGTGACAA
gi|10 : attgaactgagatcattagaaaaattgtaaattaagactaatgattgaaaactgaattttccttctTAATAAAA-----AAGAACATTGTTTTAACAGATTGTCCTGTGAAGCATTACG-TATTGAATGGAAACTGTAT-TAAATGT------GGACACTGCGTATCTGA----C-CAGC-CATGTAACAGAACAACTGGACGATGTGATAATGGTTGTAA
gi|10 : aactagattttATAAAA----A-----AGA---ACA----TT------G---------TTTTAACAGATTGTCCTG-TGAAGCATTACGTATTGAATGGAAACTGTA--TTAA--A--TGT---G------GACACTGCGTATCT-GACCAGCCA-TGTAACAGAACAACTGGACG-ATGTGATAATGGTTGTAAAAATCAATGGACCGGAGACACA-TGCAAC----CGTATGTTT-CATTTaaatcaatggaccggagacacatgcaaccgtatgtttcatttcttt
gi|11 : aactagatttttaTACATTG--ATTGTAGGATGTGCAACA-CCGGGCTTTTATGGAGATAATTGCAATAGACAGTGTCCCCAAAC--CTGTCAGGA---GG--GACACTGTGACATAGTTACCGGAAC-CTGTCTGGGGTGTATTCGGGGATACAAAGGACCTCTCTGCAAACAACGTGAG-T----CT---TG-TTA-CA---TGTTTActtt
gi|13 : cacttatacccgCAGCCTGTTATGAGGGATTCTACGGTCCAAACTG-----TGTACATCAGTGCAACTGCGAGCA-TG-----CTGA-TT--------CATGTGACAAAGAATCGGGGAGGTGTAA--ATGTCTG----CCTGGATACAGAGGGGAATTATGTGATAAacttt
gi|15 : ATGGTCCTAACTG-----TGTACATGCATGCA---GCGATAACTG----TCAGAATA-A-CACAACGTGTGATAAAGCAACAGGAAAGTGT--CAG-AGCTGTAAACCTGGGTATATAGGAGATCTCTGTAACAAa
gi|16 : GGAAGGTTTTTAGGGTTTTCCTTATACGTCTCAAAC-ACAACCGACAAAACAC---AGGGAGAAT---TG-TGTT-
gi|2 : tcaggttccacaaatgtcggttttATTTTAGAGATGAGACAAAGAGGACGTTTTGCTGGGTTTTCGCTCTATGTGTCCAATTACAACT-AAAAA--G--------AGGGTATGTACTATT-T-ACAA----A-ACGG-AC-AGGA---GT-TACCG-------CTGACTC----CAGTACA-C---TATA---TGCCAA---CATGGACGTTACTTAAT----TACAAATG------AAAAACTTTT----GAA-AACTTATCCTACCGCGCA-TACCAA--AC-AAACACA-GT--G---TCACTGAATTG---GAAGTAACTGATAACAG-TAATGTT------TCACAC--CATTATTACA-TTCAAGTACATTTAGTTTATGATAA-ATGAGGCACTTTGATATCTCTACATTGCATCTTTAGGCTGT-CAAGAATCAGGTGTGTATGGATCTAACTGTGATCTACCCTG--CCCAAACAACTGTCAGGAAAGGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTACAGGGTGGACGGGGGAGTTTTGTAACAAATGTAAGATTATATT---TA-TTA-TA------TCATTCAAATGTTGTTGATACTTTGATGAATG-TATAA----TATAAAATG--ATAATAAAAAGTACAAATCTTC-AAA-GAAATAACCATTTTG-TAGCCTGCCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAG--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATTGACTT--AAAA------AAACA-AATA-AAATACATCTACTAACTGTAAAACATTCCATAGACAGACATTATT
gi|3 : GTTTAGGGTCATATGAGGATCTATATTTTCTCTA-ATTACGATTTCAGGTTGT-AAAGAATCAGGTGTGTATGGATATAATTGTGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTGCAGGATGGGTGGGAGAGTTTTGTAATAAACGTAAGATTACACTAACTGATTAACA---ACTTTAT---ACTGCATTTG-------GATT--TGGTGTAAATAATATATAGGCTTATCAAATAA---ATA----T----AT-A---------TTTTA-TAGCCTGTCCAGTAGGA-TATTACG------GCCAACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCTTCAAGATTTCGAGAACA-AAATTAAATATATCTACTAACTGTGGAACATTTGATAG--A-----TATTTAGATgtac
gi|3 : AGATAAT-ATTTTACCAGAGTGTCCTGCGGAATCGTACGGTCCTGATTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTAAGTTCC-CTCC-CCTGTAACAGGACAACAGGAAGTTGTGACGGCGGCTGTAATCCAGGATATACCGGACAACTCTGTTACAAcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgagataatattttaccagagtgtcctgcggaatcgtacggtcctgattgtgtgtataactgtagtggacagtgtctaagttccctcccctgtaacaggacaacaggaagttgtgacggcggctgtaatccaggatataccggacaactctgttacaa
gi|4 : gtttagggtcatatgaggatctatattttctctaattacgatttcaggttgtaaagaatcaggtgtgtatggatataattgtgatctaccctgcccaaacaactgtcaggaattgagatgtgacattgtcaatggaacgtgtttgggttgtactgcaggatgggtgggagagttttgtaataaacgtaagattacactaactgattaacaactttatactgcatttggatttggtgtaaataatatataggcttatcaaataaatatatattttatagcctgtccagtaggatattacggccaacagtgtagatcaaagtgtactggacactgcagagacaacaagtcctgtaatcacaccactggacgctgtgactatggctgtgacaatggatggacagggatacattgtaacacacgtaagtcacttgtcattatcttcaagatttcgagaacaaaattaaatatatctactaactgtggaacatttgatagatatttagatcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgTTACAACTATTTCATTTTAGAAATGCGACAAAGAGGAAGAATGGCGGGGTTTTCATTGTATCTATCAAAC-ACATCT-AACAT--TG---AGAATGGTTACTTG-TG---CTACAA---GG-ACGG-AC-CGGA---TT-TACCT-CCCC--TGGATTT----TAGTATTAC---C-TG---TATCAAT--CAAGGCCGTTATGTTATATTTTACAA-CG------AGAGA-TTACCGG-GAGTACAGTATCCTGCTG---GTTACGAATTGT-GGAC-----T-T----TGATAGAAATATGTGAAGTGATCG-TTCTTGGCAATGTGGTAGTATCATATATCAATGT
gi|5 : ttgctgatatgcactgcaaacaattacaattctagacagaaccgaattcagACGATTTGCTGGATTTTTCCTCTATGTGTCCAAC-AGTACG-TCAAG--GG---ATGACGGCCATCTT-TGTTCCCATGA---GATACAG-ACTATGAACGGTACACCA-ACAG--AGAA--C----CAG-ACAATACGT-TGTTCTGTT-----CATGGACGATATGTTATTTACTACAA-CGAACGGAAAAG----GCC-GAGTATAACCTATCCTGCT------TATTAT--TCTAGATACGCAT------TTAATGAACTTTGTGAAGTGaaat
gi|6 : tcccggtgcatattatcaTACGGAGTGAACTGCAACCAGCAGTG--TCCCAACGGATGTCAAGA--TAAACGA---TGTGACATCATC-ACGGGACAATGTCTGGGCTGTACACCAGGATgaagttcatggtaggt
gi|7 : tagaatagttaacttattttttttcccttttcatcctcttttcgtttggtcacaattctgagtaaaattgatcgtgaaaaaaatatgtcttacatttacccagggtgtcttgacccaacaactGGATTTTCGCTATACGTATCAAAC-ACAACT-GACAA--GACACAGGGAGAAT---TG-TGTTTCCACGACACAA-ACAACAC-AGAG---GC-CACCATACCCGCCG--TTCTTAACGTCACAA-----------TGTCCAGTTCAGCGACGAT-CGTCATCTACTACAA-CG------AAAGAC-TACCAG-GAGTTGTCTACCCTA------G-T--GGA--AC-AG--TCA-ATACGCATTCAATGAACTGTGCGAGGTatcaaggccttggctgtaatcaaggtatgtttat
gi|8 : GAGAA---ACA----TTT-----G---------TTTTA-CAGAATGTCCTG-TGAA-TAC--CT------ATGTATTGAATGGA---A--GG-TGTGTTGCTTGTGGGCACTGTAAGGAT-GGCA-GTCCGTGTAATAGGACGACTGGACG-ATGTGATAATGGCTGTGCTAATCCGTGGATTGGGGATACA-TGCAA----ACGTACG--T-GACtgaggtttacggtg
gi|9 : gaaaagtgctatcatgaacaaA----ATCCGAAAA---AAA--------AATTG---------TTTTA---GCCTGTTCCACTGGA-CATTATG------GTGTGAATTGT---TCGGGCAGCTGTAGTC------CACATTGCCT-GACAGACA---CG-TGTGACCATGTAACCGG-TGTGTGTGTCTCGGGGTGTGATGATGGATACA-AAGGGCAACGGTGT-ACAGAACGTAAA--TACACTgtaagattga
blockSeqs : T T G A C A T G C GACAC A ATG C CCC CACAA C T ACG A ATACCCGCCGTTCTTAA T ATACGTTGTTCTGTT T T A ATTT A AACGGA ATTACCGG T T CGCGCATACCAAACAAACACAGTG C T A G GTAGTATCAT A T . C T C T A C CAT G A G A GAT G TC A AAG AC CAC A AA C A T A A T TA AACTGA A TG T A G A T AA GTG ATAA GCTT TAAT AGT AATCTTCAAAGAAATAACCA AC C G TATTGA A AGA GC C AC CTTGTG TA A A G GA A TG C T AGA TT A T G TC TTTCGAG . T GTAA C ACAGAC A . TG A AT GAAAC A AACT C C CGTAT ATAACACAA A A G TAAT A T G
blockSeqs : T T T G C . . A ACAC G ACT . TCC GAT . . . . TCCCCTGGATTT T ACCTGTATCAAT A T T TTAC . . ACTACCAG T G TGGTTACGAATTGTGGACTT T A . . TCAC . . A A T C CGA T C . A TCT T . A ATT . . T C A C G C A T CA TG . AC . C T . . . TA . TG TCAA . AATTG T T . . C AGA . . AC . GA . A . AC C A T T AC . . T . . A . . GTGG G A A C CC . G A C C T GTTCCCTCC A G A CGGC T T G
blockSeqs : A G A G . . A TG T ATC . CT GG . . . . AACAGAGAAC C CTATATGCCAA T A T CTAC . . ACTTTT T C TTATTATTCTAGATACGCAT A C . A T T . . TAT T . G T . . T G G T G T . . . TA . . . TCCG . TATA T C . . C GGA . . GT . GA . A . AC C A . G AC . . T AG . A A T G T CCAGC G G G CAG . A C
blockSeqs : A T C C . . C GG C . . T A . . . . GCTGACTC . ATGTCCAGTT G A C . . . GCCGA . C GTGGAACAGTCAATACGCAT A C GTG A . . . . . C G C . . . TTTG C . . . T A . . AG . AG . . . GG G C . . . . . . C . . . . TT C T . AT
blockSeqs : G A . . A G A . . . TTG . . . . A . . . . . T . . . AT A A . . . . .
blockSeqCons : CCC G***** ATGTGTCAAT*********** TTGTTACGNTCGATACGCAT************** TATCG***************** A**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TGTT-CCACGA---GA-ACGG-AC-AGGA---GT-TACCG-ACCC--CGGATTC----CAGTACAAC---T-TG---TGTCAA---CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACCG---G-TACGAA--AC-AGACACA-AT-CG---TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACA----TTT-AAT-G---------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA-CACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTT-C-CNCC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TGTTCCCACGAG-----ACGG-AC-AGGA---GT-TACCG-ACCC--CGGATTC----CAGTACAATGTGTCAAT-----------CATGGACGTTACGTNATNTNCTACAA-CG------AAAGACTTGCC-G-GAATAACCTATCCTACTTGTTACGNTCGATACGCAT--------------TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TTA-CA---ACTTTATTCAANTGTANTTGATACTCTGATT--TG-TGTAA----TATAAAA----ATCNGAAAA---ACATATCG-----------------TTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTAACA--ACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTT-C-CNCC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTCTTTTCGTGGGGTCAATTACTTAATCTGAGTGAGACTGCCTATCAACAGATTTACTATATATATTCCATTGATAACACAGGATGTCCTGACCCAACATTCTATGGAGAGAACTGCGACCAACAATGTCCCGAGGGATGTCAAGAGAAAAGATGCCACATCA
Unaligned ( gi|14 ): TAGCATGTTCAGTGGGCCGGTATGGATTGAATTGTTCAGAGAACTGCAGTTCCCACTGCCGACATGAAAGTAATCATTGTAACCATATAGACGGACATTGTGAACATGGATGTGACGATGGATTCCAAG
Unaligned ( gi|17 ): CAACAATGACCCTAACCACAAACAAGTGCATGTAAATA
Unaligned ( gi|18 ): TTCTGATGGTTATAATTTAAAAGGTACATGTTAGC
Alignments
lowQualScore : 2222222 111 111 11 2222222 111 444444444444444444444444 22222 11 333333333333333333 4444444444444444444444444444 1 3333333333 1 1 1 1 11 111 11 111 111111 1 22222 44444444444 2222 111 7777777777777777777777777 11 111111 111111 1 1 22222 1 11 4444444 1 1 1111 444444 1 22222 11 22222 1111 11111 33333333333
lowQualScore : 1 7 1 1 1 1 0 6 6 1 2222222 1 444 6 999 8 99 3333333 444 8 777777777777777777777777 99999 8 44 1 1 0 1 9999 8 111111111111111111 3 1 7777777777777777777777777777 1 1 0 3 6 0000000000 7 5 5 1 3 0 1 1 1 2 777 1 1 0 3 222 1 11 3 777 11 444 4 0 99 1 4 1 1 3 3 11 888888 0 99999 7 1 1 7 3 44444444444 8888 5555 111 4444444444444444444444444 00 9 6 999999 1 555 99 6 22 999999 22 6 7 6 11 1 88 3 1 33333 99 6 3 3 88 6666666 3 2 3333 1 111111 5 66666 22 1 22 0 0 00 00000 0 1 4444 1 8 77777 77777777777 1 1 3 4444 0 3 1 0 1 0
lowQualScore : . . . . . . . . . . ....... . ... . ... . .. ....... ... . ........................ ..... . .. . . . . .... . .................. . . ............................ . . . . . .......... . . . . . . . . . . ... . . . . ... . .. . ... .. ... . . .. . . . . . . .. ...... . ..... . . . . . ........... .... .... ... ......................... .. . . ...... . ... .. . .. ...... .. . . . .. . .. . . ..... .. . . . .. ....... . . .... . ...... . ..... .. . .. . . .. ..... . . .... . . ..... ........... . . . .... . . . . . .
lowQualScore : 0 3 0 0 0 0 7 7 7 0 8888888 0 000 7 666 0 00 8888888 000 0 666666666666666666666666 22222 2 00 0 4 8 0 8888 0 222222222222222222 8 4 6666666666666666666666666666 0 4 8 3 7 0000000000 3 5 5 0 3 7 0 0 0 5 888 0 2 0 2 666 0 00 8 000 00 000 6 8 44 0 2 0 2 2 2 55 888888 0 88888 3 0 0 3 7 00000000000 0000 6666 777 5555555555555555555555555 33 3 7 222222 0 777 22 7 77 222222 77 7 3 7 77 0 22 3 3 33333 22 7 2 3 33 0000000 3 0 0000 0 777777 5 55555 77 0 00 2 2 55 00000 8 0 8888 4 8 88888 88888888888 0 0 2 8888 8 5 0 2 0 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TGTTTCCACGA-GA--CGGAC-A-----GGA---GT-TACCG-ACC-----C--CGGATTC----CAGTACG--AC-TGTGCCAAT-CATGGACGTTACGTNATNTNCTACAA-CGAA------AGACTTGCC-G-GAATAACCTATCCTACC-GGN-TAC-G-A--TCGATACGCA-T--TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TT-ACA---ACTTTATTCAANTGTANTTGATACTCTGATT--T-GTG----TAATATAAAA----ATCNGAAAA---ACAT-------AT---------------CGTTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTA-ACACACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTTC-CN-CC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
Reference ( family-5496 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAACNATTTCATTTTAGAGATGAGACAAAGAGGACGNTTTGCTGGGTTTTCGCTNTACGTGTCAAAC-ACAACT-ANAAA--GG---AGGAAGGNTATCTG-TGTTCCCACGA-GA--CGGAC-A-----GGA---GT-TACCG-ACC-----C--CGGATTC----CAGTACA--A--TGTGTCAAT-CATGGACGTTACGTNATNTNCTACAA-CGAA------AGACTTGCC-G-GAATAACCTATCCTACT-TGT-TAC-G-N--TCGATACGCA-T--TCANTGAACTGTGTGAAGTGACCG-TAACAGGTAATGTTGT-GT-TCACACATCATTGTTACAATTNAAGTACATTTAGTTTATGATAA-ACGAGGNACTNTANTTTCTCTACATTGCGNCTNTAGGTTGT-CAAGAATCAGGTGTGTATGGATNTAACTGCGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATCGTCAACGGAAC-GTGTTTGGGTTGTACTNCAGGATGGGCGGGAGANTTTTGTAATAAACGTAAGATTATACT---TG-TT-ACA---ACTTTATTCAANTGTANTTGATACTCTGATT--T-GTG----TAATATAAAA----ATCNGAAAA---ACAT-------AT---------------CGTTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-GACAAGTCC-TGTAATCGCACNACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTA-ACA-ACGTAAG--T-CACTTGTCATT-ATCT--AAAAC-----GAACA-AATACAAATACATCTACTAACTGTGGAACATTCNATAG--AGA-ATTATTTAGATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAAGAAAATCGTTTTANCAGNNTGTCCTGCGGAATCCTACGGTCCTGACTG-----TGTATATAANTGTA---GCGGACANTG----TCTGAGTTC-CN-CC-CNTGTAACAGAACAACAGGAAGNTGTGACGGTGGCTGTAATCCNGGGTATACAGGGNAACTCTGTGACAA
gi|1 : TTATAACAATTTCA-----GAGATGAGACAGAGAGGACGTTTTGCTGGTTTTTTGCTCTATGTGTCAAAC-ACAACT-ATAAA--GG---AGGAAGGGTATCTA-TGTT---ACAA-GAA-CGGAC-A-----GGA---GT-TACCG-ACC-----T--TGGATTT----CAGTACA--ACTTGTGTCAAA-CATGGACGTTACATAATATTTTACAA-TGAA------AGACTTGTC-G-GAACAACTTATCCTACC-GGA-TAT-G-AAACAGCTACA-A-TCGTCACTGAATTGTGTGAAGTAACCG-TAACAGGTAATATTGT-GT-T---ACATCATTGT-ACAATTAAAATACATTTAGCTTATGATAA-ACGAGATACTCTACCTTCTCTACATTATGCCTATAGGTTGT-CAAGAATCAGGTGTGTATGGATCAAACTGTGATGTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-ATGTTTGGGTTGTACTGCAGGATGGGTGGGAGACTTTTGTAATAAATGTAAGATTATGCT---TT-TT-ACATGTACTTTATTCAATTATACTTAATACTCTAATT--T-GT-----TAATTTAAAA----ATCTGAAAA---ACATTTCAATGAC---------------CTTTTTA-CAGCCTGTCCCGCTGGA-TATTACG------GTGTACAGTGTAGGTCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACT-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTA-ACACAAGTAAT--T-CACC--ACAAT-ATCT--AAAAC-----AAATAGAATACATATACATCTACCAACT-----ACATACTATAG--AGAGATTATTT-GATGAAGATACATGGAATGGGAACACCTTATAATTTTAGACGTATGAAAACAGCAAAGAATTTGTAATGTAGCCTACCGATGTTAAACGGAAAAGTACATATATATGCTGATTCAATATAATAAAATTTCCAATAAAATCATTTTGTCAGCATGTCTTGCCGAATCCTACGGTCCTGACTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTGAGTTCTCT-CC-CCTGTAACAGGACAACAGGAAGTTGTGACGGTGGCTGTAATCCAGGGTATACAGGGCAACTCTGTGACAA
gi|10 : attgaactgagatcattagaaaaattgtaaattaagactaatgattgaaaactgaattttccttctTAATAAAA-----AAGAACATTGTTTTAACAGATTGTCCTGTGAAGCATTACG-TATTGAATGGAAACTGTAT-TAAATGT------GGACACTGCGTATCTGA---C-CA-GC-CATGTAACAGAACAACTGGACGATGTGATAATGGTTGTAA
gi|10 : aactagattttATAAAA----A-----AGA---ACAT------------------------TGTTTTAACAGATTGTCCTG-TGAAGCATTACGTATTGAATGGAAACTGTA--TTAA--A--TGT---G------GACACTGCGTATCT-GACCAGCCA-TGTAACAGAACAACTGGACG-ATGTGATAATGGTTGTAAAAATCAATGGACCGGAGACACA-TGCA-AC---CGTATGTTT-CATTTaaatcaatggaccggagacacatgcaaccgtatgtttcatttcttt
gi|11 : aactagatttttaTACATTG--ATTGTAGGATGTGCAACA-CCGGGCTTTTATGGAGATAATTGCAATAGACAGTGTCCCCAAAC--CTGTCAGGA---GG--GACACTGTGACATAGTTACCGGAAC-CTGTCTGGGGTGTATTCGGGGATACAAAGGACCTCTCTGCAAACAACGTGAG-T----CT---TG-TT-ACA---TGTTTActtt
gi|13 : cacttatacccgCAGCCTGTTATGAGGGATTCTACGGTCCAAACTG-----TGTACATCAGTGCAACTGCGAGCA-TG-----CTGA-TT--------CATGTGACAAAGAATCGGGGAGGTGTAA--ATGTCTG----CCTGGATACAGAGGGGAATTATGTGATAAacttt
gi|15 : ATGGTCCTAACTG-----TGTACATGCATGCA---GCGATAACTG----TCAGAATAA-CA-CAACGTGTGATAAAGCAACAGGAAAGTGT--CAG-AGCTGTAAACCTGGGTATATAGGAGATCTCTGTAACAAa
gi|16 : GGAAGGTTTTTAGGGTTTTCCTTATACGTCTCAAAC-ACAACCGACAAAACAC---AGGGAGAAT---TG-TGTT
gi|2 : tcaggttccacaaatgtcggttttATTTTAGAGATGAGACAAAGAGGACGTTTTGCTGGGTTTTCGCTCTATGTGTCCAATTACAACT-AAAAA--G--------AGGGTATGTACTATTT--ACAA-AA--CGGAC-A-----GGA---GT-TACCG------------CTGACTC----CAGTACACTA--TATGCCAA--CATGGACGTTACTTAAT----TACAAATGAA------AAACTTTT----GAA-AACTTATCCTACCGCGCATACCA-A--ACAA-ACACAGTG-TCACTGAATTG---GAAGTAACTGATAACAG-TAATGTT------TCACAC--CATTATTACA-TTCAAGTACATTTAGTTTATGATAA-ATGAGGCACTTTGATATCTCTACATTGCATCTTTAGGCTGT-CAAGAATCAGGTGTGTATGGATCTAACTGTGATCTACCCTG--CCCAAACAACTGTCAGGAAAGGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTACAGGGTGGACGGGGGAGTTTTGTAACAAATGTAAGATTATATT---TA-TT-ATA------TCATTCAAATGTTGTTGATACTTTGATGAAT-GTA----TAATATAAAATG--ATAATAAAAAGTACAA-------ATCTTCAAAGAAATAACCATTTTG-TAGCCTGCCCCGCTGGA-TATTACG------GTGTACAGTGTAGATCAG--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-ATGTGACTATGGCTGTGACAATGGATGGA-CGGGGATACATTGTA-ACACACGTAAG--T-CACTTGTCATTGACTT--AAAA------AAACA-AATA-AAATACATCTACTAACTGTAAAACATTCCATAGACAGACATTATT
gi|3 : GTTTAGGGTCATATGAGGATCTATATTTTCTCTA-ATTACGATTTCAGGTTGT-AAAGAATCAGGTGTGTATGGATATAATTGTGATCTACCCTG--CCCAAACAACTGTCAGGAATTGA--GA---TGTGACATTGTCAATGGAAC-GTGTTTGGGTTGTACTGCAGGATGGGTGGGAGAGTTTTGTAATAAACGTAAGATTACACTAACTGATTAACA---ACTTTAT---ACTGCATTTG-------GATT--TGGTGTAAATAATATATAGGCTTATCAAATAA---ATAT-------AT----------------ATTTTA-TAGCCTGTCCAGTAGGA-TATTACG------GCCAACAGTGTAGATCAA--AG-TGTACTG------GACACTGCAGAGAC-AACAAGTCC-TGTAATCACACCACTGGACG-CTGTGACTATGGCTGTGACAATGGATGGA-CAGGGATACATTGTA-ACACACGTAAG--T-CACTTGTCATT-ATCTTCAAGATTTCGAGAACA-AAATTAAATATATCTACTAACTGTGGAACATTTGATAG--A-----TATTTAGATgtac
gi|3 : AGATAAT-ATTTTACCAGAGTGTCCTGCGGAATCGTACGGTCCTGATTG-----TGTGTATAACTGTA---GTGGACAGTG----TCTAAGTTC-CCTCC-CCTGTAACAGGACAACAGGAAGTTGTGACGGCGGCTGTAATCCAGGATATACCGGACAACTCTGTTACAAcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgagataatattttaccagagtgtcctgcggaatcgtacggtcctgattgtgtgtataactgtagtggacagtgtctaagttccctcccctgtaacaggacaacaggaagttgtgacggcggctgtaatccaggatataccggacaactctgttacaa
gi|4 : gtttagggtcatatgaggatctatattttctctaattacgatttcaggttgtaaagaatcaggtgtgtatggatataattgtgatctaccctgcccaaacaactgtcaggaattgagatgtgacattgtcaatggaacgtgtttgggttgtactgcaggatgggtgggagagttttgtaataaacgtaagattacactaactgattaacaactttatactgcatttggatttggtgtaaataatatataggcttatcaaataaatatatattttatagcctgtccagtaggatattacggccaacagtgtagatcaaagtgtactggacactgcagagacaacaagtcctgtaatcacaccactggacgctgtgactatggctgtgacaatggatggacagggatacattgtaacacacgtaagtcacttgtcattatcttcaagatttcgagaacaaaattaaatatatctactaactgtggaacatttgatagatatttagatcgttatctagttctaccagttctaaaatcggcaaagtcttgtgttcgctcaactatgTTACAACTATTTCATTTTAGAAATGCGACAAAGAGGAAGAATGGCGGGGTTTTCATTGTATCTATCAAAC-ACATCT-AACAT--TG---AGAATGGTTACTTG-TG---CTACAAGGA--CGGAC-C-----GGA---TT-TACCT-CCC-----C--TGGATTT----TAGTATT--ACCTGTATCAAT-CAAGGCCGTTATGTTATATTTTACAA-CGAG------AGA-TTACCGG-GAGTACAGTATCCTGCT-GGT-TAC-GAA--TTG-TGGACT-T--TGATAGAAATATGTGAAGTGATCG-TTCTTGGCAATGTGGTAGTATCATATATCAATGT
gi|5 : ttgctgatatgcactgcaaacaattacaattctagacagaaccgaattcagACGATTTGCTGGATTTTTCCTCTATGTGTCCAAC-AGTACG-TCAAG--GG---ATGACGGCCATCTT-TGTTCCCATGA-GATACAGACTA-----TGAACGGTACACCA-ACAGAGAAC--CAGA-------CAATACG--T--TGTTCTGTT-CATGGACGATATGTTATTTACTACAA-CGAACGGAAAAG----GCC-GAGTATAACCTATCCTGCT-TAT-TAT-T-C--TAGATACGCA-T--TTAATGAACTTTGTGAAGTGaaat
gi|6 : tcccggtgcatattatcaTACGGAGTGAACTGCAACCAGCAGTG--TCCCAACGGATGTCAAGA--TAAACGA---TGTGACATCATC-ACGGGACAATGTCTGGGCTGTACACCAGGATgaagttcatggtaggt
gi|7 : tagaatagttaacttattttttttcccttttcatcctcttttcgtttggtcacaattctgagtaaaattgatcgtgaaaaaaatatgtcttacatttacccagggtgtcttgacccaacaactGGATTTTCGCTATACGTATCAAAC-ACAACT-GACAA--GACACAGGGAGAAT---TG-TGTTTCCACGA-CA--CAAAC-AACACAGAG---GC-CACCATACC-----CGCCG--TTCTTAACGTCACA--A--TGT-CCAGTTCAGCGACGAT-CGTCATCTACTACAA-CGAA------AGACT-ACCAG-GAGTTGTCTACCCTAGT-GGA--AC-A-G--TCAATACGCA-T--TCAATGAACTGTGCGAGGTatcaaggccttggctgtaatcaaggtatgtttat
gi|8 : GAGAA---ACAT--------T---------------TGTTTTA-CAGAATGTCCTG-TGAA-TAC--CT------ATGTATTGAATGGA---A--GG-TGTGTTGCTTGTGGGCACTGTAAGGAT-GGCA-GTCCGTGTAATAGGACGACTGGACG-ATGTGATAATGGCTGTGCTAATCCGTGGATTGGGGATACA-TGCA---A-ACGTACG--T-GACtgaggtttacggtg
gi|9 : gaaaagtgctatcatgaacaaA----ATCCGAAAA---AAAA-------AT---------------TGTTTTA---GCCTGTTCCACTGGA-CATTATG------GTGTGAATTGT---TCGGGCAGCTGTAGTC------CACATTGCCT-GACAGACA---CG-TGTGACCATGTAACCGG-TGTGTGTGTCTCGGGGTGTGATGATGGATACA-AAGGGCAACGGTGTACAGA-ACGTAAA--TACACTgtaagattga
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTTCTTTTCGTGGGGTCAATTACTTAATCTGAGTGAGACTGCCTATCAACAGATTTACTATATATATTCCATTGATAACACAGGATGTCCTGACCCAACATTCTATGGAGAGAACTGCGACCAACAATGTCCCGAGGGATGTCAAGAGAAAAGATGCCACATCA
Unaligned ( gi|14 ): TAGCATGTTCAGTGGGCCGGTATGGATTGAATTGTTCAGAGAACTGCAGTTCCCACTGCCGACATGAAAGTAATCATTGTAACCATATAGACGGACATTGTGAACATGGATGTGACGATGGATTCCAAG
Unaligned ( gi|17 ): CAACAATGACCCTAACCACAAACAAGTGCATGTAAATA
Unaligned ( gi|18 ): TTCTGATGGTTATAATTTAAAAGGTACATGTTAGC