lowQualScore : 111111 111 22 111 1111111 1111 11 11111 1 11 1 111 222222222222222 111111111 11111 1111111 11111111111 1 111 11 1111111 11 111111111
lowQualScore : 4 3 000000 3 3 222 3 00 555 999 6 3 3 6 3 111 55 3333333 2222 88 44 4 8 6 888 22222 888 0 5 11 4 333 777777777777777 333333333 4 8888888888 88888 66 0000000 2 6 6 6 3 3 3 3 88888888888 0 5 777 3 3 66 3 3 3 55 11 55 4 4 2 9999999 4 1 00 3 55 3 0 3 55 55 666666666 8888 88 0 0
lowQualScore : . . ...... . . ... . .. ... ... . . . . . ... .. ....... .... .. .. . . . ... ..... ... . . .. . ... ............... ......... . .......... ..... .. ....... . . . . . . . . ........... . . ... . . .. . . . .. .. .. . . . ....... . . .. . .. . . . .. .. ......... .... .. . .
lowQualScore : 0 6 555555 6 6 333 2 22 888 222 7 3 1 0 6 888 44 0000000 1111 66 33 0 0 6 888 55555 888 0 6 99 1 333 888888888888888 111111111 0 8888888888 99999 11 1111111 1 7 7 7 3 3 3 3 88888888888 0 6 555 6 6 99 6 6 6 00 00 55 0 0 8 6666666 0 6 00 6 00 6 4 6 55 55 000000000 5555 44 8 8
consensus : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATCGC-TTTATAATCGGAAGTATC---AAA---CCGA-TCGA-TTATCGAT-TAATAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACA-TTT-TTTA-CC-CTTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--TATATATATA--TATGCT---------------TCC---C-----TGGGAACGAATAAATGA-CAGGAAGAC-T-AACTTCCGCATG-----T--TGACTA--G----AGCTCG-CCATT-TTGGAATAAACTA-AA-AG-AC-G-GA-G---------AAAAT-CCGGGT-AATG-CTAT-CC-GC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TACGCA---A-TTTTGTAATC-GATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GAT----TA-TAATCGATCATCAGCCCAT
Reference ( gi|5 ) : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATCGG-TTTATAATCGGAACTATC---AAA---CCGA-TCAA-TTATCGAT-TAATAGT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACA-TTT-CTTA-CC-CTTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--TATATATATA--TATGCT---------------TCC---C-----TGGGAACGAATAAATGA-CAGGAAGAC-T-AATTTTTGCATG-----T--TGACTA--G----AGCTTG-CCATT-TTGGAATAAACTA-AA-AG-AC-G-GA-G---------AAAAT-CCGAGT-ATTG-CTAT-CT-GC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TATGCA---A-TTTTGTAATC-GATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GAT----TG-TAATCGATCATCAGCCCAT
gi|6 : TGATGGGCAATCGG-TTTGAAATT-A------T-AATCGATC-ATCGC-TTTGTAATCGGAAGTATC---AAA---CCGA-TCAA-TTATTGAT-TAATAAT-C-GGTTTTA-GTAAAA-------ATAT--GAAAGGTTACA-TTT-TTTA-CC-CTTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T---T-TATA--TGTGCT---------------TCC---C-----TGGGAACAAATGAATGA-CAGGAAGAC-T-TACTTCTGCGTG-----T--TAACTA--G----AGCTTG-TCATT-TTGGAATAAACTA-AA-AG-AC-G-GA-G---------AAAAT-CTGGGT-AATG-CTAT-CC-GC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TATGCA---A-TTTTGTAATC-GATAATAGGAA-CGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GAT----TA-TAATCGATCATCAGTCCAT
gi|3 : TGATGGGCAATCGGGTTTGAAATC-A------TTAATCGATCCATCCGCTTTATAATCG-AAGTATC---AAA---CCGA-TAAT-TTATCGAAATAATAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACA-TTT-TTTA-CCGTTTTT---TTTA-----ACCTTTGTTGAAATAT---TTTCTGGGTGTTCTATATATATATA--TATGCT---------------TCC---C-----T-GGAACGAAAAAATGA-CAGGAAGAC-T-AACTT---CACGCTT--T--TAAATA--G----A-CTTG-CCATT-TTAGATTAAACTA-TA-AG-AT-G-GA-G---------AAAATCCCGGGT-AATG-CTAT-CC-GC-CATTTTTAT-TTCT-GGCTC-TAC--A--G--AC-TTTCGAT-TATGCA---A-TTTTGTAATC-GATAATCGGAATCGTAAA---TGTA-AA--CCGA-TCGA--T--T--TC---------GAT----TA-TAA-CGA-CAT-AGCCCATca
gi|10 : gTGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATCGC-TTTA-A---------------------------CAA-TTATCGAT-TAATAATAG-G-TTTT------------------------AGGTTACC-TTT-TTTA-CC-ca
gi|7 : GATAGGTAATCAG-TTTGAAATC-A------T-AATCCATC-ATTGC-TTTGTAAATGGAAGTATC---AAA---CCGA-TCAA-TTATTGAT-TAGTAAT-CAG-TTATA-ATAAAA-------TTAA---AAAGGTTACC-TTT-TTT---------T---TTAA-----CCCTTTGTT-AAATAT---TT-CTGGGTCTTC--AATATATG-A---ATGCA---------------TCC---C-----TTGGAATGAATAAATTA-CCGGAAGAC-T-AACTTCCGTATG-----T--TGACTA--G----AGCTCG-CCATT-TTGAAATAAACTA-AA-AG-AT-G-GA-A---------ATAAT-CCCAGC-CATG-CTAT-CC-GC-CATTTTTAT-TTTG-GGCTCTGACAGA--G--AT-TTTTGAT-TACGCA---G-TTTTGTAATC-ATTAATCGGAATCGGAAAG--GGTA-AA--CCGA-ACAA-TT--T--TT---------TAT----TA-CAATCAATCATCAGCCCATagcttccctggaaacgaagactaactttcgtgtgttgactatagagcttgtcattttgaaataaactaaatgatggagacaatctggggcatgctattcaccattttctctgacagagactttcgattacgtatatacttttgtaatcgataatcggaaagggtaaaccgatcaattttcgattataatcgatcatctgccca
gi|2 : GATGGGCAATCGG-T--GAAATCTA------T-AATCAATC-ATCGC-TTTATA-TCTG---TATC---AAAA--CCGAATCAA-TTATCGAT-TAATAAT-C-G---TTA-GTAAAA-------TTAA--GAAAGGTTACATTTT-TTTACCC-CTTAT---TTTA-----CCCTTTGTTGAAATA----TT-CTGGGTGTTCT-TATATATATA--TATGCT---------------TCC---C-----TAGGAATGAATAAATGAGCAGGAAGACAT-AACTACTGCATG-----CTATAACTA--G----AGCTTGCCCATT-TTGGAATAAACTG-AATAGAAC-G-GA-GGGGGGAGGAAAAATATCGGGTAATTGTCTTT-CT-GTGC---TCTAT-TTCTGGGCTCTTAC--AGGG--ACTTTTCGA--TATGTA--------TGTTCTCGGATAATCGGAATCGGAAAGAAGGTA-AA--CC-A-CCGA-c
gi|16 : ATGGGCAATGAG-TATGAAATC-A------T-AAACAATT-ATTTC-TTCATAATTGGAAGT-TA---AAA---CTGA-TCGA-TTATCAAT-TAATAacacgcgatatctccacagcctcccctcaccaaatccgatcactcccaggccacatcacaaatctcaa
gi|18 : aATGGATCATCGG-TTTGAAATC-A------T-AATCGATC-ATCaa
gi|13 : GGGCAATTGG-TTTGAAATC-ATACTAGT-AATTGATT-ATCGC-TTTATA---------ATC---AAA---CCG---------ATCGAT-TAATAAT-CGG-TTTTA-AAAGAA-------TCAA---ACATGTTACG-TTT--TTA-CC-CTTa
gi|4 : aCAATCGG-TTTGAAATC-A------T-AATCGATC-ATCGC-TTTATAATTGGAAGTATC---AAA---TCGA-TCAA-TTATCGAT-TAATAAT-A-GGTTTTA-ATAAAA-------TTTA--AAAAGATTACA-TTT-TTTA-CC-CTTAT---TTAA-----CCCTTTGTTGAAATAT---TT-CAGGGT---C--TATATGTATAAATATGCT---------------TCC---T-----TGGGTATGAATAAATGA-CAAGAAGAC-TGAATTTCTGCATG-----T--TGACTA--G----AGCTTG-CCATT-TTGGAAC-AACTA-AA-AG-ACAG-AA-A---------AAAAT-CCGGGT-AATG-TTAT-CC-GC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TACGCA---A-TATTGTAATT-GATATTCGGAATTGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GAT----TA-TAATTGATCATCAACCCAT
gi|1 : atcgcTCGA-TTAGCAATT-G------T-AATCGATA-ATCGG------AATCGGAAA-ATG---AAAAACCCGACTCGATTTTTCGAT-TATTAAC-C-G-Tca
gi|9 : aatcgagcattgatattcagcaaagtattatctgattactccaagttatttctgttaattaataatccgttttttgtgaaaaaaatatttaatcatagggtcaatttgtttacctcttatatttttataaacctctttgttgaaatataaattactggtgttctatagcttctcacttagggaaacttagaaaaaatacgctgatccaccctgggagaacgactgaaacataaatctagaacagcaagtagctttaaaacttcagctggttaccattacttatgagcgtgccattgttggaataaactatagagatggatgaaaaccggtgtaatgctatcccgccatttttgtattctggctcttacagacttATT-G------T-AA-CGATA-ATCGG------AATCGGAAA-ATTGGAAAA---CCGA-TCGA-TTTTCGAT-TATTAcacacccatca
gi|8 : gattaacataattcttttaattttaagaagacattgttattacttggaattctggatgttattatacgtccagtaaaattacaagaaaccttcaggtgttgttaccttactatgagctgccattgttggaataaactatagagatggatgaacacgggtatgctatcccgccatttttatttctggctcttacagttactttcgatatatgccTTATAATCGGAAGTATC---AA--------------TTATTGAT-TAATAAT-C-GGTTTTG-ATAAAA-------TTGA--G----GTCAC--------------CTT-T---TTCA-----CCATTTGTTAAGACAT---TT-CTGG---TTC--TATAT--ATG--AATGGTGGATAAAGAAACAAATCCAGACATTAATGGGAACGAATAAATGA-CATGA------------------G-----T--TGACTA--G----AGTTCA-CCATT-TTGAAACGAACTG-AA-AG-AC-G-GA-A---------ACAAT-CCAGGC-CTTG-CTAT-CC-GC-CATTTCTAT-TTCC-GGCTCTGAC--ATCA--AC-TTTTGAT-TATGTA---A-TTTTGTAATC-GATAATCAGACTCTGAAAG--ATTATAA--TCGA-TC-A-TTAATAATCAGACTGAAAGAT----TA-TAATCTATTATTGGCCCATacgtcacagcccatcactacttatatgcatacaaatcattcataacaaaacaataat
gi|11 : atggtttgaaaATAATCGGAAAGGGC---AAA---CCGA-TCAA-TTTTCTAT-T-ATAAT-C-G-c
gi|1 : ctcgccattttagaataaactaaaagacggaaaaaattccgggccatgttattcgccatttttatttctgactcttacagactttcgtaatcgAT-TAATAAT-CCG-TTTTTTGTGAAAAAAATATTTAATCATAGGGTCA-A-TTTGTTTA-CCTCTTATATTTTTATAAACCTCTTTGTTGAAATATAAATTACT-GGTGTTC--TATAatcatcagcctatc
gi|15 : aatcgagcattgatattcagcaaagtattatctgattactccaagttatttctgtta-------TTAA--GAAAGGTTACC-TTT-TTTA-CC-CTTTT---ATTA-----CCCTATGTTGAAATAT---TT-CTGGGTCTTC--TACAT---TA--AATGTT---------------TCC---T-----TGGGAACAAATAAATGA-CAGGAAgcttctcacttagggaaacttagaaaaaatacgctgatccaccctgggagaacgactgaaacataaatctagaacagcaagtagctttaaaacttcagctggttaccattacttatgagcgtgccattgttggaataaactatagagatggatgaaaaccggtgtaatgctatcccgccatttttgtattctggctcttacagactttcgattagcaattgtaatcgataatcggaatcggaaaatgaaaaacccgactcgatttttcgattattaaccgtcacacccatca
gi|10 : GCT---------------TCC---C-----TGGAAACGAA--------------GAC-T-AACTTTCGTGTG-----T--TGACTATAG----AGCTTG-TCATT-TTGAAATAAACTA-AA-TG-AT-G-GA-G---------ACAAT-CTGGGG-CATG-CTAT-TC-AC-CATTTTC----TCT-GAC----AG--A--G--AC-TTTCGAT-TACGTATATACTTTTGTAATC-GATAATC------GGAAAG--GGTA-AA--CCGA-TCAA-TT--T--TC---------GAT----TA-TAATCGATCATCTGCCCA
gi|14 : tgatgggcaatcggtttgaaatcataatcgatcatcgctttaacaattatcgattaataataggttttaggttaccttttttaccaT---------------TCC---T-----TGGGAACAAATAAATGA-CAGGAAG---------TTTACATGAAGTGT--TGACTA--TCTCTAGCTCGACCATT-TTGGAATAAACTA-AA-AG-AC-GAAA-A---------AAAAT-CC
gi|12 : -----TGGGAACAAATAAATGA-CAGGAGGAC-T-AACTTCCACATG-----T--TGACTA--A----AGC--G-CCATT-TT--------C-----------------------------AAT-CCGGGC-CTTG-CTAT-CT-GC-CATTTTTAT-TTAC-GACTCTGAC--aggccatg
gi|9 : tgctgaataaagaaacaacaccagacattaaACTAT-G----AGCT-G-CCATTGTTGGAATAAACTATAG-AG-AT-G-GATG---------AACA---CGGGT-A-TG-CTATCCC-GC-CATTTTTAT-TTCT-GGCTCTTAC--A--GTTAC-TTTCGATATATGCC---A---TTGTAA-C-GATAATCGGAATCGGAAAATTGGAA-AA--CCGA-TCGA-TT--T--TC---------GAT----TA-TTAACG-TCA-CAGCCCAT
gi|1 : gattaacataattcttttaattttaagaagacattgttattacttggaattctggatgttattatacgtccagtaaaattacaagaaaccttcaggtgttgttacctt--G----AGCGTG-CCATTGTTGGAATAAACTATAG-AG-AT-G-GATG---------AAAAC-CGGTGT-AATG-CTAT-CCCGC-CATTTTTGTATTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TA-GCA---A---TTGTAATC-GATAATCGGAATCGGAAAA--TGAA-AAACCCGACTCGATTT--T--TC---------GAT----TATTAACCG-TCA-CA-CCCATcactacttatatgcatacaaatcattcataacaaaacaataat
gi|11 : aatcgagcattgatattcagcaaagtattatctgattactccaagttatttctgttaattaataatccgttttttgtgaaaaaaatatttaatcatagggtcaatttgtttacctcttatatttttataaacctctttgttgaaatataaattactggtgttctatagcttctcacttagggaaacttagaaaaaatacgctgatccaccctgggagaacgactgaaacataaatctagaacagcaagtagctttaaaacttcagctggttaccattacttatCTCG-CCATT-TTAGAATAAACTA-AA-AG-AC-G-GA-A---------AAAATTCCGGGC-CATG-TTAT-TC-GC-CATTTTTAT-TTCT-GACTCTTAC--A--G--AC-TTTCG-------------------TAATC-GATAATC------GGAAAG--GGCA-AA--CCGA-TCAA-TT--T--TC---------TAT----TA-TAATCGATCATCAGCCTATca
gi|17 : ATCTGAAAT--AGTA-AA--CCAA-TCAT-TT--T--TC---------AATTCGATG-T-ATAGATCATCTGCCCATc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TAGATAACAAATTTTAAAAACAACAATAATGTTA
Unaligned ( gi|20 ): AAATATGAGATCACCTCATTTGGGCAAACCAA
Alignments
lowQualScore : 111111 11111111111 111 1111111 11111 333333333333333333333333333333 222222222222222 111111111 1111111 111111 1111111 22222 11111111111 11 1111111 111111111
lowQualScore : 4 4 111111 3 3 3 6 55 55 44444444444 999999 3 44 3 444 3 0000000 777 55 3 3 6 3 777 0 00000 777 8 2 99 555555555555555555555555555555 555555555555555 555 111111111 44 0000000 3 6666 3 44 000000 777777 44 5555555 33333 2 6 6 6 3 3 3 3 66666666666 9 3 555 3 6 3 3 3 44 00 55 3 3 5 5555555 3 0 99 3 44 3 3 55 55 444444444 55 3 3
lowQualScore : . . ...... . . . . .. .. ........... ...... . .. . ... . ....... ... .. . . . . ... . ..... ... . . .. .............................. ............... ... ......... .. ....... . .... . .. ...... ...... .. ....... ..... . . . . . . . . ........... . . ... . . . . . .. .. .. . . . ....... . . .. . .. . . .. .. ......... .. . .
lowQualScore : 0 0 555555 6 6 6 7 00 77 66666666666 666666 3 66 6 111 6 8888888 777 77 3 3 7 5 000 1 00000 000 0 5 55 666666666666666666666666666666 444444444444444 888 777777777 22 0000000 1 5555 1 66 888888 888888 66 4444444 33333 5 2 2 2 1 1 1 1 55555555555 2 1 999 1 7 3 3 3 66 00 00 6 6 5 4444444 6 5 22 3 66 3 3 00 00 555555555 00 6 6
consensus : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACA-TTT-TTTA-CC-CTTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--TATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGCG-TGT--TG-------ACTA-----GAGCTCG-CCATT-TTGGAATAAACTA-AA-AG-AC-G-GA-G---------AAAAT-CCGG-GCNA-TG-CTAT-CCGC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TACGCA---A-TTTTGTAATC-GATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
Reference ( family-5476 ) : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CGA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACA-TTT-TTTA-CC-CTTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--TATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGCA-TGT--TG-------ACTA-----GAGCTCG-CCATT-TTGGAATAAACTA-AA-AG-AC-G-GA-G---------AAAAT-CCGG-GTAA-TG-CTAT-CCGC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TACGCA---A-TTTTGTAATC-GATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
gi|1 : -AATCGAGC-ATT-G----ATATTCAGCAAAGTATTAT--CTGA-TTACTCCAAGTTATTTCTGTTAAT-TAA--TAAT-CCG-TTTTTTGTGAAAAAAATATTTAATCATAGGGTCA-A-TTTGTTTA-CCTCTTATATTTTTATAAACCTCTTTGTTGAAATATAAATTACT-GGTGTTC--TATAGCTTCTCACTTAGGGAAACTTAGAAAAAATACGCTGA-------------TCCACC---C-----TGGGAGAACGACTGAAACATAAA-TCTAGAA-CAGCAAGTAGC-TTTAAAACTTC-AGCT-GGT--TACC-----ATTACTTATGAGCGTG-CCATTGTTGGAATAAACTATAG-AG-AT-G-GATG---------AAAA--CCGGTGTAA-TG-CTATCCCGC-CATTTTTGTATTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TA-GCA---A---TTGTAATC-GATAATCGGAATCGGAAAA--TGAA-AAACCCGACTCGATTT--T--TC---------GATT--ATTA-ACCG-TCA-CA-CCCAT
gi|10 : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTA-A-----------------------------CAA-TTATC------GAT-TAA--TAATAG-G-TTTT------------------------AGGTTACC-TTT-TTTA-CC-ca
gi|10 : GCT---------------TC---C---C-----TGG--AAACGA-------A-------------------G--AC-T----AACTTT-CGTG-TGT--TG-------ACTATA---GAGCTTG-TCATT-TTGAAATAAACTA-AA-TG-AT-G-GA-G---------ACAAT-CTGG-GGCA-TG-CTAT-TCAC-CATTTTC----TCT-GAC----AG--A--G--AC-TTTCGAT-TACGTATATACTTTTGTAATC-GATAATC------GGAAAG--GGTA-AA--CCGA-TCAA-TT--T--TC---------GATT--A-TA-ATCGATCATCTGCCCAagcttccctggaaacgaagactaactttcgtgtgttgactatagagcttgtcattttgaaataaactaaatgatggagacaatctggggcatgctattcaccattttctctgacagagactttcgattacgtatatacttttgtaatcgataatcggaaagggtaaaccgatcaattttcgattataatcgatcatctgccca
gi|11 : tgatgggcaatcggtttgaaatcataatcgatcatcgctttaacaattatcgattaataataggttttaggttaccttttttaccaCTCG-CCATT-TTAGAATAAACTA-AA-AG-AC-G-GA-A---------AAAATTCCGG-GCCA-TG-TTAT-TCGC-CATTTTTAT-TTCT-GACTCTTAC--A--G--AC-TTTCG-------------------TAATC-GATAATC------GGAAAG--GGCA-AA--CCGA-TCAA-TT--T--TC---------TATT--A-TA-ATCGATCATCAGCCTAT
gi|12 : -----TGG--GAACAA-------ATAAA-T----GA-CAGGAGG--AC-T----AACTTC-CACA-TGT--TG-------ACTA-----AAG--CG-CCATT-TT--------C-----------------------------AAT-CCGG-GCCT-TG-CTAT-CTGC-CATTTTTAT-TTAC-GACTCTGAC--c
gi|13 : tgctgaataaagaaacaacaccagacattaaGGGCAATTGG-TTTGAAATC-ATACTAGT-AATTGATT-ATC-GCTTTATA-----------ATCAAA-CCG--------------ATC------GAT-TAA--TAAT-CGG-TTTTA-AAAGAA-------TCAA---ACATGTTACG--TT-TTTA-CC-CTT
gi|14 : aT---------------TC---C---T-----TGG--GAACAA-------ATAAA-T----GA-CAGGAAG---T-T----TACAT---GAAGTGT--TG-------ACTATCTC-TAGCTCGACCATT-TTGGAATAAACTA-AA-AG-AC-GAAA-A---------AAAAT-CCAG-GCCA-TG-
gi|15 : -------TTAA--GAAAGGTTACC-TTT-TTTA-CC-CTTTT---ATTA-----CCCTATGTTGAAATAT---TT-CTGGGTCTTC--TACA----------T-----------TA-----AATGTT---------------TC---C---T-----TGG--GAACAA-------ATAAA-T----GA-CAGGAA
gi|16 : ATGGGCAATGAG-TATGAAATC-A------T-AAACAATT-ATT-TCTTCATAATTGG--AAGT-TAAAA-CTGA-T-----CGA-TTATC------AAT-TAA--TAA
gi|17 : aATCTGAAAT--AGTA-AA--CCAA-TCAT-TT--T--TC---------AATTCGA-TGTATAGATCATCTGCCCATa
gi|18 : ATGGATCATCGG-TTTGAAATC-A------T-AATCGATC-ATC-
gi|2 : GATGGGCAATCGG-T--GAAATCTA------T-AATCAATC-ATC-GCTTTATA-TCTG-----TATCAAAACCGAAT-----CAA-TTATC------GAT-TAA--TAAT-C-G---TTA-GTAAAA-------TTAA--GAAAGGTTACATTTT-TTTACCC-CTTAT---TTTA-----CCCTTTGTTGAAATA----TT-CTGGGTGTTCT-TATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TAG--GAATGA-------ATAAA-T----GAGCAGGAAG--ACAT----AACTAC-TGCA-TGCTATA-------ACTA-----GAGCTTGCCCATT-TTGGAATAAACTG-AATAGAAC-G-GA-GGGGGGAGGAAAAATATCGG-GTAATTGTCTTT-CTGTGC---TCTAT-TTCTGGGCTCTTAC--AGGG--ACTTTTCGA--TATGTA--------TGTTCTCGGATAATCGGAATCGGAAAGAAGGTA-AA--CC-A-CCGA-a
gi|3 : TGATGGGCAATCGGGTTTGAAATC-A------TTAATCGATCCATCCGCTTTATAATCG---AAGTATCAAA-CCGA-T-----AAT-TTATC------GAAATAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACA-TTT-TTTA-CCGTTTTT---TTTA-----ACCTTTGTTGAAATAT---TTTCTGGGTGTTCTATATA----------TA--------TATA-----TATGCT---------------TC---C---C-----T-G--GAACGA-------AAAAA-T----GA-CAGGAAG--AC-T----AACTTCACGC--TTT--TA-------AATA-----GA-CTTG-CCATT-TTAGATTAAACTA-TA-AG-AT-G-GA-G---------AAAATCCCGG-GTAA-TG-CTAT-CCGC-CATTTTTAT-TTCT-GGCTC-TAC--A--G--AC-TTTCGAT-TATGCA---A-TTTTGTAATC-GATAATCGGAATCGTAAA---TGTA-AA--CCGA-TCGA--T--T--TC---------GATT--A-TA-A-CGA-CAT-AGCCCATacacgcgatatctccacagcctcccctcaccaaatccgatcactcccaggccacatcacaaatctcaa
gi|4 : gCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATTGG--AAGTATCAAA-TCGA-T-----CAA-TTATC------GAT-TAA--TAAT-A-GGTTTTA-ATAAAA-------TTTA--AAAAGATTACA-TTT-TTTA-CC-CTTAT---TTAA-----CCCTTTGTTGAAATAT---TT-CAGGGT---C--TATA----------TG--------TATAAA---TATGCT---------------TC---C---T-----TGG--GTATGA-------ATAAA-T----GA-CAAGAAG--AC-TG---AATTTC-TGCA-TGT--TG-------ACTA-----GAGCTTG-CCATT-TTGGAAC-AACTA-AA-AG-ACAG-AA-A---------AAAAT-CCGG-GTAA-TG-TTAT-CCGC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TACGCA---A-TATTGTAATT-GATATTCGGAATTGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATTGATCATCAACCCATca
gi|5 : atcgcTGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GGTTTATAATCGG--AACTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAGT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACA-TTT-CTTA-CC-CTTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--TATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AATTTT-TGCA-TGT--TG-------ACTA-----GAGCTTG-CCATT-TTGGAATAAACTA-AA-AG-AC-G-GA-G---------AAAAT-CCGA-GTAT-TG-CTAT-CTGC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TATGCA---A-TTTTGTAATC-GATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--G-TA-ATCGATCATCAGCCCATca
gi|6 : TGATGGGCAATCGG-TTTGAAATT-A------T-AATCGATC-ATC-GCTTTGTAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATT------GAT-TAA--TAAT-C-GGTTTTA-GTAAAA-------ATAT--GAAAGGTTACA-TTT-TTTA-CC-CTTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-------------T---------TATA-----TGTGCT---------------TC---C---C-----TGG--GAACAA-------ATGAA-T----GA-CAGGAAG--AC-T----TACTTC-TGCG-TGT--TA-------ACTA-----GAGCTTG-TCATT-TTGGAATAAACTA-AA-AG-AC-G-GA-G---------AAAAT-CTGG-GTAA-TG-CTAT-CCGC-CATTTTTAT-TTCT-GGCTCTTAC--A--G--AC-TTTCGAT-TATGCA---A-TTTTGTAATC-GATAATAGGAA-CGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGTCCAT
gi|7 : GATAGGTAATCAG-TTTGAAATC-A------T-AATCCATC-ATT-GCTTTGTAAATGG--AAGTATCAAA-CCGA-T-----CAA-TTATT------GAT-TAG--TAAT-CAG-TTATA-ATAAAA-------TTAA---AAAGGTTACC-TTT-TTT---------T---TTAA-----CCCTTTGTT-AAATAT---TT-CTGGGTCTTC--AATA----------TA--------TG-A------ATGCA---------------TC---C---C-----TTG--GAATGA-------ATAAA-T----TA-CCGGAAG--AC-T----AACTTC-CGTA-TGT--TG-------ACTA-----GAGCTCG-CCATT-TTGAAATAAACTA-AA-AG-AT-G-GA-A---------ATAAT-CCCA-GCCA-TG-CTAT-CCGC-CATTTTTAT-TTTG-GGCTCTGACAGA--G--AT-TTTTGAT-TACGCA---G-TTTTGTAATC-ATTAATCGGAATCGGAAAG--GGTA-AA--CCGA-ACAA-TT--T--TT---------TATT--A-CA-ATCAATCATCAGCCCATca
gi|8 : TTATAATCGG--AAGTATCAA-----------------TTATT------GAT-TAA--TAAT-C-GGTTTTG-ATAAAA-------TTGA--G----GTCAC--------------CTT-T---TTCA-----CCATTTGTTAAGACAT---TT-CTGG---TTC--TATA----------T----------ATG-----AATGGTGGATAAAGAAACAAATC---CAGACATTAATGG--GAACGA-------ATAAA-T----GA-CATGA-------------------------GT--TG-------ACTA-----GAGTTCA-CCATT-TTGAAACGAACTG-AA-AG-AC-G-GA-A---------ACAAT-CCAG-GCCT-TG-CTAT-CCGC-CATTTCTAT-TTCC-GGCTCTGAC--ATCA--AC-TTTTGAT-TATGTA---A-TTTTGTAATC-GATAATCAGACTCTGAAAG--ATTATAA--TCGA-TC-A-TTAATAATCAGACTGAAAGATT--A-TA-ATCTATTATTGGCCCATc
gi|9 : atggtttgaaa------GAT-TAACATAAT-T-C-TTTTA-ATT----------TTAA--GAAG----ACA-TTG-TT---------AT---T--A-----C------TTGGAAT------T-CTGGATGTT------------------A--------T-TA-----TACG-----------------TC---C-------------------A-------GTAAAAT----TA-CAAGAA---AC--------CTTC-AG-G-TGT--TGTTACCTTACTAT----GAGCT-G-CCATTGTTGGAATAAACTATAG-AG-AT-G-GATG---------AACA---CGG-GT-A-TG-CTATCCCGC-CATTTTTAT-TTCT-GGCTCTTAC--A--GTTAC-TTTCGATATATGCC---A---TTGTAA-C-GATAATCGGAATCGGAAAATTGGAA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TT-AACG-TCA-CAGCCCATc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGATAACAAATTTTAAAAACAACAATAATGTTA
Unaligned ( gi|20 ): AAATATGAGATCACCTCATTTGGGCAAACCAA
Alignments
lowQualScore : 111111 1111111 111 1111111 11111 333333333333333333333333333333 222222222222222 111111111 1111111 111111 11111 2222222 22222 11111111111 11 1111111 111111111
lowQualScore : 4 4 111111 3 3 3 6 55 55 0000000 3 999999 3 44 3 444 3 0000000 777 2 3 3 6 3 3 777 0 00000 777 8 2 55 4 555555555555555555555555555555 555555555555555 555 111111111 44 0000000 3 6666 3 44 222222 44 11111 0000000 33333 2 3 3 6 6 3 444 3 66666666666 9 3 44 3 3 6 3 3 3 44 55 00 3 3 5 5555555 3 0 99 3 44 3 3 55 55 444444444 55 3 3
lowQualScore : . . ...... . . . . .. .. ....... . ...... . .. . ... . ....... ... . . . . . . ... . ..... ... . . .. . .............................. ............... ... ......... .. ....... . .... . .. ...... .. ..... ....... ..... . . . . . . ... . ........... . . .. . . . . . . .. .. .. . . . ....... . . .. . .. . . .. .. ......... .. . .
lowQualScore : 0 0 555555 6 6 6 7 00 77 3333333 6 666666 3 66 6 111 6 8888888 777 3 3 3 7 6 5 000 1 00000 000 0 5 55 0 666666666666666666666666666666 444444444444444 888 777777777 22 0000000 1 5555 1 66 888888 99 11111 0000000 33333 5 1 1 2 2 1 222 1 55555555555 2 1 22 1 1 7 3 3 3 66 00 00 6 6 5 4444444 6 5 22 3 66 3 3 00 00 555555555 00 6 6
consensus : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGC---GTGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGG-GCNAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
Reference ( family-5476 ) : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGC---GTGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGG-GCNAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
gi|1 : -AATCGAGC-ATT-G----ATATTCAGCAAAGTATTAT--CTGA-TTACTCCAAGTTATTTCTGTTAAT-TAA--TAAT-CCG-TTTTTTGTGAAAAAAATATTTAATCATAGGGTCA-ATTTGTTT-ACCTC-TTATATTTTTATAAACCTCTTTGTTGAAATATAAATTACT-GGTGTTC--T-ATAGCTTCTCACTTAGGGAAACTTAGAAAAAATACGCTGA-------------TCCACC---C-----TGGGAGAACGACTGAAACATAAA-TCTAGAA-CAGCAAGTAGC-TTTAAAACTTC-AGC---TGGTTACC-----ATTACTTATGAGCGTG-CC-ATTGTTGGAATAAACTATAG-AGA-T-G-GATG---------AAAA--CCGGTGTAAT-G-CTATCCCGC-CATTTTTGTATTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TA-GCA---A---TTGTAATCG-ATAATCGGAATCGGAAAA--TGAA-AAACCCGACTCGATTT--T--TC---------GATT--ATTA-ACCG-TCA-CA-CCCAT
gi|10 : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTA-A-----------------------------CAA-TTATC------GAT-TAA--TAATAG-G-TTTT------------------------AGGTTACCTTT-TTT-ACC-ca
gi|10 : GCT---------------TC---C---C-----TGG--AAACGA-------A-------------------G--AC-T----AACTTT-CGT---GTGTTG-------ACTATA---GAGCTTG-TC-ATT-TTGAAATAAACTA-AA-TGA-T-G-GA-G---------ACAAT-CTGG-GGCAT-G-CTAT-TCAC-CATTTTC----TCTGA-C----AG--A--G--ACTTT-CGAT-TACGTATATACTTTTGTAATCG-ATAATC------GGAAAG--GGTA-AA--CCGA-TCAA-TT--T--TC---------GATT--A-TA-ATCGATCATCTGCCCAagcttccctggaaacgaagactaactttcgtgtgttgactatagagcttgtcattttgaaataaactaaatgatggagacaatctggggcatgctattcaccattttctctgacagagactttcgattacgtatatacttttgtaatcgataatcggaaagggtaaaccgatcaattttcgattataatcgatcatctgccca
gi|11 : tgatgggcaatcggtttgaaatcataatcgatcatcgctttaacaattatcgattaataataggttttaggttaccttttttaccaCTCG-CC-ATT-TTAGAATAAACTA-AA-AGA-C-G-GA-A---------AAAATTCCGG-GCCAT-G-TTAT-TCGC-CATTTTTAT-TTCTGA-CTCTTAC--A--G--ACTTT-CG-------------------TAATCG-ATAATC------GGAAAG--GGCA-AA--CCGA-TCAA-TT--T--TC---------TATT--A-TA-ATCGATCATCAGCCTAT
gi|12 : -----TGG--GAACAA-------ATAAA-T----GA-CAGGAGG--AC-T----AACTTC-CAC---ATGTTG-------ACTA-----AAG--CG-CC-ATT-TT--------C-----------------------------AAT-CCGG-GCCTT-G-CTAT-CTGC-CATTTTTAT-TTACGA-CTCTGAC--c
gi|13 : tgctgaataaagaaacaacaccagacattaaGGGCAATTGG-TTTGAAATC-ATACTAGT-AATTGATT-ATC-GCTTTATA-----------ATCAAA-CCG--------------ATC------GAT-TAA--TAAT-CGG-TTTTA-AAAGAA-------TCAA---ACATGTTACG-TT-TTT-ACC-C-TT
gi|14 : aT---------------TC---C---T-----TGG--GAACAA-------ATAAA-T----GA-CAGGAAG------------TTTA-CATGAAGTGTTG-------ACTATCTC-TAGCTCGACC-ATT-TTGGAATAAACTA-AA-AGA-C-GAAA-A---------AAAAT-CCAG-GCCAT-G-
gi|15 : -------TTAA--GAAAGGTTACCTTT-TTT-ACC-C-TTTT---ATTA-----CCCTATGTTGAAATAT---TT-CTGGGTCTTC--T-ACA----------T-----------TA-----AATGTT---------------TC---C---T-----TGG--GAACAA-------ATAAA-T----GA-CAGGAA
gi|16 : ATGGGCAATGAG-TATGAAATC-A------T-AAACAATT-ATT-TCTTCATAATTGG--AAGT-TAAAA-CTGA-T-----CGA-TTATC------AAT-TAA--TAA
gi|17 : aATCTGAAAT--AGTA-AA--CCAA-TCAT-TT--T--TC---------AATTCGA-TGTATAGATCATCTGCCCATa
gi|18 : ATGGATCATCGG-TTTGAAATC-A------T-AATCGATC-ATC-
gi|2 : GATGGGCAATCGG-T--GAAATCTA------T-AATCAATC-ATC-GCTTTATA-TCTG-----TATCAAAACCGAAT-----CAA-TTATC------GAT-TAA--TAAT-C-G-TT--A-GTAAAA-------TTAA--GAAAGGTTACATTT-TTTTACC-CCTTAT---TTTA-----CCCTTTGTTGAAATAT---T--CTGGGTGTTC--TTATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TAG--GAATGA-------ATAAA-T----GAGCAGGAAG--ACAT----AACTAC-TGC---ATGCTATA-----ACTA-----GAGCTTG-CCCATT-TTGGAATAAACTG-AATAGAAC-G-GA-GGGGGGAGGAAAAATATCGG-GTAATTGTCTTT-CTGTGC---TCTAT-TTCTGGGCTCTTAC--A--GGGACTTTTCGAT--ATGTA--------TGTTCTCGGATAATCGGAATCGGAAAGAAGGTA-AA--CC-A-CCGA-a
gi|3 : TGATGGGCAATCGGGTTTGAAATC-A------TTAATCGATCCATCCGCTTTATAATCG---AAGTATCAAA-CCGA-T-----AAT-TTATC------GAAATAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACCGT-TTTT---TTTA-----ACCTTTGTTGAAATAT---TTTCTGGGTGTTCTAT-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----T-G--GAACGA-------AAAAA-T----GA-CAGGAAG--AC-T----AACTTCACGC----TTTTA-------AATA-----GA-CTTG-CC-ATT-TTAGATTAAACTA-TA-AGA-T-G-GA-G---------AAAATCCCGG-GTAAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTC-TAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATCGGAATCGTAAA---TGTA-AA--CCGA-TCGA--T--T--TC---------GATT--A-TA-A-CGA-CAT-AGCCCATacacgcgatatctccacagcctcccctcaccaaatccgatcactcccaggccacatcacaaatctcaa
gi|4 : gCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATTGG--AAGTATCAAA-TCGA-T-----CAA-TTATC------GAT-TAA--TAAT-A-GGTTTTA-ATAAAA-------TTTA--AAAAGATTACATTT-TTT-ACC-C-TTAT---TTAA-----CCCTTTGTTGAAATAT---TT-CAGGGT---C--T-ATA----------TG--------TATAAA---TATGCT---------------TC---C---T-----TGG--GTATGA-------ATAAA-T----GA-CAAGAAG--AC-TG---AATTTC-TGC---ATGTTG-------ACTA-----GAGCTTG-CC-ATT-TTGGAAC-AACTA-AA-AGA-CAG-AA-A---------AAAAT-CCGG-GTAAT-G-TTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TATTGTAATTG-ATATTCGGAATTGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATTGATCATCAACCCATca
gi|5 : atcgcTGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GGTTTATAATCGG--AACTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAGT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-CTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AATTTT-TGC---ATGTTG-------ACTA-----GAGCTTG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGA-GTATT-G-CTAT-CTGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--G-TA-ATCGATCATCAGCCCATca
gi|6 : TGATGGGCAATCGG-TTTGAAATT-A------T-AATCGATC-ATC-GCTTTGTAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATT------GAT-TAA--TAAT-C-GGTTTTA-GTAAAA-------ATAT--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T--------------T---------TATA-----TGTGCT---------------TC---C---C-----TGG--GAACAA-------ATGAA-T----GA-CAGGAAG--AC-T----TACTTC-TGC---GTGTTA-------ACTA-----GAGCTTG-TC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CTGG-GTAAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATAGGAA-CGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGTCCAT
gi|7 : GATAGGTAATCAG-TTTGAAATC-A------T-AATCCATC-ATT-GCTTTGTAAATGG--AAGTATCAAA-CCGA-T-----CAA-TTATT------GAT-TAG--TAAT-CAG-TTATA-ATAAAA-------TTAA---AAAGGTTACCTTT-TTT----------T---TTAA-----CCCTTTGTT-AAATAT---TT-CTGGGTCTTC--A-ATA----------TA--------TG-A------ATGCA---------------TC---C---C-----TTG--GAATGA-------ATAAA-T----TA-CCGGAAG--AC-T----AACTTC-CGT---ATGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGAAATAAACTA-AA-AGA-T-G-GA-A---------ATAAT-CCCA-GCCAT-G-CTAT-CCGC-CATTTTTAT-TTTGGG-CTCTGACAGA--G--ATTTT-TGAT-TACGCA---G-TTTTGTAATCA-TTAATCGGAATCGGAAAG--GGTA-AA--CCGA-ACAA-TT--T--TT---------TATT--A-CA-ATCAATCATCAGCCCATca
gi|8 : TTATAATCGG--AAGTATCAA-----------------TTATT------GAT-TAA--TAAT-C-GGTTTTG-ATAAAA-------TTGA--G----GTCAC-------------C-TT-T---TTCA-----CCATTTGTTAAGACAT---TT-CTGG---TTC--T-ATA----------T----------ATG-----AATGGTGGATAAAGAAACAAATC---CAGACATTAATGG--GAACGA-------ATAAA-T----GA-CATGA---------------------------GTTG-------ACTA-----GAGTTCA-CC-ATT-TTGAAACGAACTG-AA-AGA-C-G-GA-A---------ACAAT-CCAG-GCCTT-G-CTAT-CCGC-CATTTCTAT-TTCCGG-CTCTGAC--ATCA--ACTTT-TGAT-TATGTA---A-TTTTGTAATCG-ATAATCAGACTCTGAAAG--ATTATAA--TCGA-TC-A-TTAATAATCAGACTGAAAGATT--A-TA-ATCTATTATTGGCCCATc
gi|9 : atggtttgaaa------GAT-TAACATAAT-T-C-TTTTA-ATT----------TTAA--GAAG----ACATTG-TT----------AT---T--A-----C------TTGGAAT------T-CTGGATGTT-------------------A--------T-TA-----TACG-----------------TC---C-------------------A-------GTAAAAT----TA-CAAGAA---AC--------CTTC-AG----GTGTTGTTACCTTACTAT----GAGCT-G-CC-ATTGTTGGAATAAACTATAG-AGA-T-G-GATG---------AACA---CGG-G-TAT-G-CTATCCCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--GTTACTTT-CGATATATGCC---A---TTGTAA-CG-ATAATCGGAATCGGAAAATTGGAA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TT-AACG-TCA-CAGCCCATc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGATAACAAATTTTAAAAACAACAATAATGTTA
Unaligned ( gi|20 ): AAATATGAGATCACCTCATTTGGGCAAACCAA
Alignments
lowQualScore : 111111 1111111 111 1111111 11111 333333333333333333333333333333 222222222222222 111111111 1111111 111111 11111 2222222 22222 11111111111 11 1111111 111111111
lowQualScore : 4 4 111111 3 3 3 6 55 55 0000000 3 999999 3 44 3 444 3 0000000 777 2 3 3 6 3 3 777 0 00000 777 8 2 55 4 555555555555555555555555555555 555555555555555 555 111111111 44 0000000 3 6666 3 44 222222 44 11111 0000000 33333 2 3 3 6 6 3 444 3 66666666666 9 3 44 3 3 6 3 3 3 44 55 00 3 3 5 5555555 3 0 99 3 44 3 3 55 55 444444444 55 3 3
lowQualScore : . . ...... . . . . .. .. ....... . ...... . .. . ... . ....... ... . . . . . . ... . ..... ... . . .. . .............................. ............... ... ......... .. ....... . .... . .. ...... .. ..... ....... ..... . . . . . . ... . ........... . . .. . . . . . . .. .. .. . . . ....... . . .. . .. . . .. .. ......... .. . .
lowQualScore : 0 0 555555 6 6 6 7 00 77 3333333 6 666666 3 66 6 111 6 8888888 777 3 3 3 7 6 5 000 1 00000 000 0 5 55 0 666666666666666666666666666666 444444444444444 888 777777777 22 0000000 1 5555 1 66 888888 99 11111 0000000 33333 5 1 1 2 2 1 222 1 55555555555 2 1 22 1 1 7 3 3 3 66 00 00 6 6 5 4444444 6 5 22 3 66 3 3 00 00 555555555 00 6 6
consensus : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGC---GTGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGG-GCNAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
Reference ( family-5476 ) : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGC---GTGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGG-GCNAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
gi|1 : -AATCGAGC-ATT-G----ATATTCAGCAAAGTATTAT--CTGA-TTACTCCAAGTTATTTCTGTTAAT-TAA--TAAT-CCG-TTTTTTGTGAAAAAAATATTTAATCATAGGGTCA-ATTTGTTT-ACCTC-TTATATTTTTATAAACCTCTTTGTTGAAATATAAATTACT-GGTGTTC--T-ATAGCTTCTCACTTAGGGAAACTTAGAAAAAATACGCTGA-------------TCCACC---C-----TGGGAGAACGACTGAAACATAAA-TCTAGAA-CAGCAAGTAGC-TTTAAAACTTC-AGC---TGGTTACC-----ATTACTTATGAGCGTG-CC-ATTGTTGGAATAAACTATAG-AGA-T-G-GATG---------AAAA--CCGGTGTAAT-G-CTATCCCGC-CATTTTTGTATTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TA-GCA---A---TTGTAATCG-ATAATCGGAATCGGAAAA--TGAA-AAACCCGACTCGATTT--T--TC---------GATT--ATTA-ACCG-TCA-CA-CCCAT
gi|10 : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTA-A-----------------------------CAA-TTATC------GAT-TAA--TAATAG-G-TTTT------------------------AGGTTACCTTT-TTT-ACC-ca
gi|10 : GCT---------------TC---C---C-----TGG--AAACGA-------A-------------------G--AC-T----AACTTT-CGT---GTGTTG-------ACTATA---GAGCTTG-TC-ATT-TTGAAATAAACTA-AA-TGA-T-G-GA-G---------ACAAT-CTGG-GGCAT-G-CTAT-TCAC-CATTTTC----TCTGA-C----AG--A--G--ACTTT-CGAT-TACGTATATACTTTTGTAATCG-ATAATC------GGAAAG--GGTA-AA--CCGA-TCAA-TT--T--TC---------GATT--A-TA-ATCGATCATCTGCCCAagcttccctggaaacgaagactaactttcgtgtgttgactatagagcttgtcattttgaaataaactaaatgatggagacaatctggggcatgctattcaccattttctctgacagagactttcgattacgtatatacttttgtaatcgataatcggaaagggtaaaccgatcaattttcgattataatcgatcatctgccca
gi|11 : tgatgggcaatcggtttgaaatcataatcgatcatcgctttaacaattatcgattaataataggttttaggttaccttttttaccaCTCG-CC-ATT-TTAGAATAAACTA-AA-AGA-C-G-GA-A---------AAAATTCCGG-GCCAT-G-TTAT-TCGC-CATTTTTAT-TTCTGA-CTCTTAC--A--G--ACTTT-CG-------------------TAATCG-ATAATC------GGAAAG--GGCA-AA--CCGA-TCAA-TT--T--TC---------TATT--A-TA-ATCGATCATCAGCCTAT
gi|12 : -----TGG--GAACAA-------ATAAA-T----GA-CAGGAGG--AC-T----AACTTC-CAC---ATGTTG-------ACTA-----AAG--CG-CC-ATT-TT--------C-----------------------------AAT-CCGG-GCCTT-G-CTAT-CTGC-CATTTTTAT-TTACGA-CTCTGAC--c
gi|13 : tgctgaataaagaaacaacaccagacattaaGGGCAATTGG-TTTGAAATC-ATACTAGT-AATTGATT-ATC-GCTTTATA-----------ATCAAA-CCG--------------ATC------GAT-TAA--TAAT-CGG-TTTTA-AAAGAA-------TCAA---ACATGTTACG-TT-TTT-ACC-C-TT
gi|14 : aT---------------TC---C---T-----TGG--GAACAA-------ATAAA-T----GA-CAGGAAG------------TTTA-CATGAAGTGTTG-------ACTATCTC-TAGCTCGACC-ATT-TTGGAATAAACTA-AA-AGA-C-GAAA-A---------AAAAT-CCAG-GCCAT-G-
gi|15 : -------TTAA--GAAAGGTTACCTTT-TTT-ACC-C-TTTT---ATTA-----CCCTATGTTGAAATAT---TT-CTGGGTCTTC--T-ACA----------T-----------TA-----AATGTT---------------TC---C---T-----TGG--GAACAA-------ATAAA-T----GA-CAGGAA
gi|16 : ATGGGCAATGAG-TATGAAATC-A------T-AAACAATT-ATT-TCTTCATAATTGG--AAGT-TAAAA-CTGA-T-----CGA-TTATC------AAT-TAA--TAA
gi|17 : aATCTGAAAT--AGTA-AA--CCAA-TCAT-TT--T--TC---------AATTCGA-TGTATAGATCATCTGCCCATa
gi|18 : ATGGATCATCGG-TTTGAAATC-A------T-AATCGATC-ATC-
gi|2 : GATGGGCAATCGG-T--GAAATCTA------T-AATCAATC-ATC-GCTTTATA-TCTG-----TATCAAAACCGAAT-----CAA-TTATC------GAT-TAA--TAAT-C-G-TT--A-GTAAAA-------TTAA--GAAAGGTTACATTT-TTTTACC-CCTTAT---TTTA-----CCCTTTGTTGAAATAT---T--CTGGGTGTTC--TTATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TAG--GAATGA-------ATAAA-T----GAGCAGGAAG--ACAT----AACTAC-TGC---ATGCTATA-----ACTA-----GAGCTTG-CCCATT-TTGGAATAAACTG-AATAGAAC-G-GA-GGGGGGAGGAAAAATATCGG-GTAATTGTCTTT-CTGTGC---TCTAT-TTCTGGGCTCTTAC--A--GGGACTTTTCGAT--ATGTA--------TGTTCTCGGATAATCGGAATCGGAAAGAAGGTA-AA--CC-A-CCGA-a
gi|3 : TGATGGGCAATCGGGTTTGAAATC-A------TTAATCGATCCATCCGCTTTATAATCG---AAGTATCAAA-CCGA-T-----AAT-TTATC------GAAATAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACCGT-TTTT---TTTA-----ACCTTTGTTGAAATAT---TTTCTGGGTGTTCTAT-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----T-G--GAACGA-------AAAAA-T----GA-CAGGAAG--AC-T----AACTTCACGC----TTTTA-------AATA-----GA-CTTG-CC-ATT-TTAGATTAAACTA-TA-AGA-T-G-GA-G---------AAAATCCCGG-GTAAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTC-TAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATCGGAATCGTAAA---TGTA-AA--CCGA-TCGA--T--T--TC---------GATT--A-TA-A-CGA-CAT-AGCCCATacacgcgatatctccacagcctcccctcaccaaatccgatcactcccaggccacatcacaaatctcaa
gi|4 : gCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATTGG--AAGTATCAAA-TCGA-T-----CAA-TTATC------GAT-TAA--TAAT-A-GGTTTTA-ATAAAA-------TTTA--AAAAGATTACATTT-TTT-ACC-C-TTAT---TTAA-----CCCTTTGTTGAAATAT---TT-CAGGGT---C--T-ATA----------TG--------TATAAA---TATGCT---------------TC---C---T-----TGG--GTATGA-------ATAAA-T----GA-CAAGAAG--AC-TG---AATTTC-TGC---ATGTTG-------ACTA-----GAGCTTG-CC-ATT-TTGGAAC-AACTA-AA-AGA-CAG-AA-A---------AAAAT-CCGG-GTAAT-G-TTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TATTGTAATTG-ATATTCGGAATTGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATTGATCATCAACCCATca
gi|5 : atcgcTGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GGTTTATAATCGG--AACTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAGT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-CTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AATTTT-TGC---ATGTTG-------ACTA-----GAGCTTG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGA-GTATT-G-CTAT-CTGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--G-TA-ATCGATCATCAGCCCATca
gi|6 : TGATGGGCAATCGG-TTTGAAATT-A------T-AATCGATC-ATC-GCTTTGTAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATT------GAT-TAA--TAAT-C-GGTTTTA-GTAAAA-------ATAT--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T--------------T---------TATA-----TGTGCT---------------TC---C---C-----TGG--GAACAA-------ATGAA-T----GA-CAGGAAG--AC-T----TACTTC-TGC---GTGTTA-------ACTA-----GAGCTTG-TC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CTGG-GTAAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATAGGAA-CGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGTCCAT
gi|7 : GATAGGTAATCAG-TTTGAAATC-A------T-AATCCATC-ATT-GCTTTGTAAATGG--AAGTATCAAA-CCGA-T-----CAA-TTATT------GAT-TAG--TAAT-CAG-TTATA-ATAAAA-------TTAA---AAAGGTTACCTTT-TTT----------T---TTAA-----CCCTTTGTT-AAATAT---TT-CTGGGTCTTC--A-ATA----------TA--------TG-A------ATGCA---------------TC---C---C-----TTG--GAATGA-------ATAAA-T----TA-CCGGAAG--AC-T----AACTTC-CGT---ATGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGAAATAAACTA-AA-AGA-T-G-GA-A---------ATAAT-CCCA-GCCAT-G-CTAT-CCGC-CATTTTTAT-TTTGGG-CTCTGACAGA--G--ATTTT-TGAT-TACGCA---G-TTTTGTAATCA-TTAATCGGAATCGGAAAG--GGTA-AA--CCGA-ACAA-TT--T--TT---------TATT--A-CA-ATCAATCATCAGCCCATca
gi|8 : TTATAATCGG--AAGTATCAA-----------------TTATT------GAT-TAA--TAAT-C-GGTTTTG-ATAAAA-------TTGA--G----GTCAC-------------C-TT-T---TTCA-----CCATTTGTTAAGACAT---TT-CTGG---TTC--T-ATA----------T----------ATG-----AATGGTGGATAAAGAAACAAATC---CAGACATTAATGG--GAACGA-------ATAAA-T----GA-CATGA---------------------------GTTG-------ACTA-----GAGTTCA-CC-ATT-TTGAAACGAACTG-AA-AGA-C-G-GA-A---------ACAAT-CCAG-GCCTT-G-CTAT-CCGC-CATTTCTAT-TTCCGG-CTCTGAC--ATCA--ACTTT-TGAT-TATGTA---A-TTTTGTAATCG-ATAATCAGACTCTGAAAG--ATTATAA--TCGA-TC-A-TTAATAATCAGACTGAAAGATT--A-TA-ATCTATTATTGGCCCATc
gi|9 : atggtttgaaa------GAT-TAACATAAT-T-C-TTTTA-ATT----------TTAA--GAAG----ACATTG-TT----------AT---T--A-----C------TTGGAAT------T-CTGGATGTT-------------------A--------T-TA-----TACG-----------------TC---C-------------------A-------GTAAAAT----TA-CAAGAA---AC--------CTTC-AG----GTGTTGTTACCTTACTAT----GAGCT-G-CC-ATTGTTGGAATAAACTATAG-AGA-T-G-GATG---------AACA---CGG-G-TAT-G-CTATCCCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--GTTACTTT-CGATATATGCC---A---TTGTAA-CG-ATAATCGGAATCGGAAAATTGGAA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TT-AACG-TCA-CAGCCCATc
blockSeqs : G T TACTAG T C C A . AA AT . . A CA A GG . . G C . T G C T . . . T C TA T TGTATAAAT GGATAAAGAAACAAA . AGACATTAA . . A . G . AT AC TGAAG TTACCTT TCTC T A C G T T AC A GGGGGGAGGA T . GC T T C G . G AG TC GG T A C TATACTT G AA T . . . AA AA AGACTGAAA CG . T
blockSeqs : . . . . . . A . A T . . . . . GG . . G G . . . . A . . . . G . . TATATAT . . C . . . . . . TG C TG TA TA C . . . . . CA . TG A . CC . . . . . . . . TT . . T ATT . TT . . . . . . . . . .
blockSeqs : . . . . . . A . A T . . . . . GG . . G C . . . . T . . . . G . . TATATAT . . T . . . . . . T C CA . T C . . . . . T . G C . CC . . . . . . . . . . . T ATA . . . . . . . . . . . .
blockSeqs : . . . . . . A . A T . . . . . AG . . A A . . . . A . . . . G . . TATATAT . . T . . . . . . T C CA . . C . . . . . C . A . . CC . . . . . . . . . . . C ATT . . . . . . . . . . . .
blockSeqs : . . . . . . A . A T . . . . . GG . . G A . . . . A . . . . G . . TTATAT . . C . . . . . . T T CA . . T . . . . . C . A . . TA . . . . . . . . . . . T ATT . . . . . . . . . . . .
blockSeqs : . . . . . . A . A T . . . . . G . . G A . . . . A . . . . C . . TATGA . . C . . . . . . T T CA . . T . . . . . T . G . . TA . . . . . . . . . . . T GTT . . . . . . . . . . . .
blockSeqs : . . . . . . A . A T . . . . . G . . G A . . . . A . . . . G . . TATGA . . T . . . . . . T T CG . . T . . . . . C . A . . TA . . . . . . . . . . . C ATT . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . G . . G A . . . . . . . . . . . . ATTAT . . C . . . . . . T T TA . . T . . . . . C . G . . TA . . . . . . . . . . . T A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . G . . . C . . . . . . . . . . . . TTAA . . C . . . . . . . C C . . T . . . . . T . G . . TA . . . . . . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C . . . A . . . . . . C . . . . . . . A G . . C . . . . . C . A . . CC . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . C . . . . . T . A . . CC . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . .
blockSeqCons : ** A* T****** ****** ******* G** *** ***** *** TATATAT*********************** *************** *** ** ******* **** ** T***** ******* ***** G********** ATT**** **
originalCons : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGC---GTGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGG-GCNAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
finalCons : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGAT------CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAAG--AAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATATATATAT-----------------------ATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--ACT-----AACTTC-CGC---GTGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GAG----------AAAAT-CCGG-GCNAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCAATT----TTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGATAACAAATTTTAAAAACAACAATAATGTTA
Unaligned ( gi|20 ): AAATATGAGATCACCTCATTTGGGCAAACCAA
Alignments
lowQualScore : 111111 1111111 111 1111111 11111 333333333333333333333333333333 222222222222222 111111111 1111111 111111 11111 2222222 22222 11111111111 11 1111111 111111111
lowQualScore : 4 4 111111 3 3 3 6 55 55 0000000 3 999999 3 44 3 444 3 0000000 777 2 3 3 6 3 3 777 0 00000 777 8 2 55 4 555555555555555555555555555555 555555555555555 555 111111111 44 0000000 3 6666 3 44 222222 44 11111 0000000 33333 2 3 3 6 6 3 444 3 66666666666 9 3 44 3 3 6 3 3 3 44 55 00 3 3 5 5555555 3 0 99 3 44 3 3 55 55 444444444 55 3 3
lowQualScore : . . ...... . . . . .. .. ....... . ...... . .. . ... . ....... ... . . . . . . ... . ..... ... . . .. . .............................. ............... ... ......... .. ....... . .... . .. ...... .. ..... ....... ..... . . . . . . ... . ........... . . .. . . . . . . .. .. .. . . . ....... . . .. . .. . . .. .. ......... .. . .
lowQualScore : 0 0 555555 6 6 6 7 00 77 3333333 6 666666 3 66 6 111 6 8888888 777 3 3 3 7 6 5 000 1 00000 000 0 5 55 0 666666666666666666666666666666 444444444444444 888 777777777 22 0000000 1 5555 1 66 888888 99 11111 0000000 33333 5 1 1 2 2 1 222 1 55555555555 2 1 22 1 1 7 3 3 3 66 00 00 6 6 5 4444444 6 5 22 3 66 3 3 00 00 555555555 00 6 6
consensus : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGC---GTGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGG-GCNAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
Reference ( family-5476 ) : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AACTTC-CGC---GTGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGG-GCNAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGCCCAT
gi|1 : -AATCGAGC-ATT-G----ATATTCAGCAAAGTATTAT--CTGA-TTACTCCAAGTTATTTCTGTTAAT-TAA--TAAT-CCG-TTTTTTGTGAAAAAAATATTTAATCATAGGGTCA-ATTTGTTT-ACCTC-TTATATTTTTATAAACCTCTTTGTTGAAATATAAATTACT-GGTGTTC--T-ATAGCTTCTCACTTAGGGAAACTTAGAAAAAATACGCTGA-------------TCCACC---C-----TGGGAGAACGACTGAAACATAAA-TCTAGAA-CAGCAAGTAGC-TTTAAAACTTC-AGC---TGGTTACC-----ATTACTTATGAGCGTG-CC-ATTGTTGGAATAAACTATAG-AGA-T-G-GATG---------AAAA--CCGGTGTAAT-G-CTATCCCGC-CATTTTTGTATTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TA-GCA---A---TTGTAATCG-ATAATCGGAATCGGAAAA--TGAA-AAACCCGACTCGATTT--T--TC---------GATT--ATTA-ACCG-TCA-CA-CCCAT
gi|10 : TGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTA-A-----------------------------CAA-TTATC------GAT-TAA--TAATAG-G-TTTT------------------------AGGTTACCTTT-TTT-ACC-ca
gi|10 : GCT---------------TC---C---C-----TGG--AAACGA-------A-------------------G--AC-T----AACTTT-CGT---GTGTTG-------ACTATA---GAGCTTG-TC-ATT-TTGAAATAAACTA-AA-TGA-T-G-GA-G---------ACAAT-CTGG-GGCAT-G-CTAT-TCAC-CATTTTC----TCTGA-C----AG--A--G--ACTTT-CGAT-TACGTATATACTTTTGTAATCG-ATAATC------GGAAAG--GGTA-AA--CCGA-TCAA-TT--T--TC---------GATT--A-TA-ATCGATCATCTGCCCAagcttccctggaaacgaagactaactttcgtgtgttgactatagagcttgtcattttgaaataaactaaatgatggagacaatctggggcatgctattcaccattttctctgacagagactttcgattacgtatatacttttgtaatcgataatcggaaagggtaaaccgatcaattttcgattataatcgatcatctgccca
gi|11 : tgatgggcaatcggtttgaaatcataatcgatcatcgctttaacaattatcgattaataataggttttaggttaccttttttaccaCTCG-CC-ATT-TTAGAATAAACTA-AA-AGA-C-G-GA-A---------AAAATTCCGG-GCCAT-G-TTAT-TCGC-CATTTTTAT-TTCTGA-CTCTTAC--A--G--ACTTT-CG-------------------TAATCG-ATAATC------GGAAAG--GGCA-AA--CCGA-TCAA-TT--T--TC---------TATT--A-TA-ATCGATCATCAGCCTAT
gi|12 : -----TGG--GAACAA-------ATAAA-T----GA-CAGGAGG--AC-T----AACTTC-CAC---ATGTTG-------ACTA-----AAG--CG-CC-ATT-TT--------C-----------------------------AAT-CCGG-GCCTT-G-CTAT-CTGC-CATTTTTAT-TTACGA-CTCTGAC--c
gi|13 : tgctgaataaagaaacaacaccagacattaaGGGCAATTGG-TTTGAAATC-ATACTAGT-AATTGATT-ATC-GCTTTATA-----------ATCAAA-CCG--------------ATC------GAT-TAA--TAAT-CGG-TTTTA-AAAGAA-------TCAA---ACATGTTACG-TT-TTT-ACC-C-TT
gi|14 : aT---------------TC---C---T-----TGG--GAACAA-------ATAAA-T----GA-CAGGAAG------------TTTA-CATGAAGTGTTG-------ACTATCTC-TAGCTCGACC-ATT-TTGGAATAAACTA-AA-AGA-C-GAAA-A---------AAAAT-CCAG-GCCAT-G-
gi|15 : -------TTAA--GAAAGGTTACCTTT-TTT-ACC-C-TTTT---ATTA-----CCCTATGTTGAAATAT---TT-CTGGGTCTTC--T-ACA----------T-----------TA-----AATGTT---------------TC---C---T-----TGG--GAACAA-------ATAAA-T----GA-CAGGAA
gi|16 : ATGGGCAATGAG-TATGAAATC-A------T-AAACAATT-ATT-TCTTCATAATTGG--AAGT-TAAAA-CTGA-T-----CGA-TTATC------AAT-TAA--TAA
gi|17 : aATCTGAAAT--AGTA-AA--CCAA-TCAT-TT--T--TC---------AATTCGA-TGTATAGATCATCTGCCCATa
gi|18 : ATGGATCATCGG-TTTGAAATC-A------T-AATCGATC-ATC-
gi|2 : GATGGGCAATCGG-T--GAAATCTA------T-AATCAATC-ATC-GCTTTATA-TCTG-----TATCAAAACCGAAT-----CAA-TTATC------GAT-TAA--TAAT-C-G-TT--A-GTAAAA-------TTAA--GAAAGGTTACATTT-TTTTACC-CCTTAT---TTTA-----CCCTTTGTTGAAATAT---T--CTGGGTGTTC--TTATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TAG--GAATGA-------ATAAA-T----GAGCAGGAAG--ACAT----AACTAC-TGC---ATGCTATA-----ACTA-----GAGCTTG-CCCATT-TTGGAATAAACTG-AATAGAAC-G-GA-GGGGGGAGGAAAAATATCGG-GTAATTGTCTTT-CTGTGC---TCTAT-TTCTGGGCTCTTAC--A--GGGACTTTTCGAT--ATGTA--------TGTTCTCGGATAATCGGAATCGGAAAGAAGGTA-AA--CC-A-CCGA-a
gi|3 : TGATGGGCAATCGGGTTTGAAATC-A------TTAATCGATCCATCCGCTTTATAATCG---AAGTATCAAA-CCGA-T-----AAT-TTATC------GAAATAA--TAAT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-TTT-ACCGT-TTTT---TTTA-----ACCTTTGTTGAAATAT---TTTCTGGGTGTTCTAT-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----T-G--GAACGA-------AAAAA-T----GA-CAGGAAG--AC-T----AACTTCACGC----TTTTA-------AATA-----GA-CTTG-CC-ATT-TTAGATTAAACTA-TA-AGA-T-G-GA-G---------AAAATCCCGG-GTAAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTC-TAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATCGGAATCGTAAA---TGTA-AA--CCGA-TCGA--T--T--TC---------GATT--A-TA-A-CGA-CAT-AGCCCATacacgcgatatctccacagcctcccctcaccaaatccgatcactcccaggccacatcacaaatctcaa
gi|4 : gCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GCTTTATAATTGG--AAGTATCAAA-TCGA-T-----CAA-TTATC------GAT-TAA--TAAT-A-GGTTTTA-ATAAAA-------TTTA--AAAAGATTACATTT-TTT-ACC-C-TTAT---TTAA-----CCCTTTGTTGAAATAT---TT-CAGGGT---C--T-ATA----------TG--------TATAAA---TATGCT---------------TC---C---T-----TGG--GTATGA-------ATAAA-T----GA-CAAGAAG--AC-TG---AATTTC-TGC---ATGTTG-------ACTA-----GAGCTTG-CC-ATT-TTGGAAC-AACTA-AA-AGA-CAG-AA-A---------AAAAT-CCGG-GTAAT-G-TTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TACGCA---A-TATTGTAATTG-ATATTCGGAATTGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATTGATCATCAACCCATca
gi|5 : atcgcTGATGGGCAATCGG-TTTGAAATC-A------T-AATCGATC-ATC-GGTTTATAATCGG--AACTATCAAA-CCGA-T-----CAA-TTATC------GAT-TAA--TAGT-C-G-TTTTA-GTAAAA-------TTAA--GAAAGGTTACATTT-CTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T-ATA----------TA--------TATA-----TATGCT---------------TC---C---C-----TGG--GAACGA-------ATAAA-T----GA-CAGGAAG--AC-T----AATTTT-TGC---ATGTTG-------ACTA-----GAGCTTG-CC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CCGA-GTATT-G-CTAT-CTGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATCGGAATCGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--G-TA-ATCGATCATCAGCCCATca
gi|6 : TGATGGGCAATCGG-TTTGAAATT-A------T-AATCGATC-ATC-GCTTTGTAATCGG--AAGTATCAAA-CCGA-T-----CAA-TTATT------GAT-TAA--TAAT-C-GGTTTTA-GTAAAA-------ATAT--GAAAGGTTACATTT-TTT-ACC-C-TTAT---TTTA-----CCCTTTGTTGAAATAT---TT-CTGGGTGTTC--T--------------T---------TATA-----TGTGCT---------------TC---C---C-----TGG--GAACAA-------ATGAA-T----GA-CAGGAAG--AC-T----TACTTC-TGC---GTGTTA-------ACTA-----GAGCTTG-TC-ATT-TTGGAATAAACTA-AA-AGA-C-G-GA-G---------AAAAT-CTGG-GTAAT-G-CTAT-CCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--G--ACTTT-CGAT-TATGCA---A-TTTTGTAATCG-ATAATAGGAA-CGGAAAG--GGTA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TA-ATCGATCATCAGTCCAT
gi|7 : GATAGGTAATCAG-TTTGAAATC-A------T-AATCCATC-ATT-GCTTTGTAAATGG--AAGTATCAAA-CCGA-T-----CAA-TTATT------GAT-TAG--TAAT-CAG-TTATA-ATAAAA-------TTAA---AAAGGTTACCTTT-TTT----------T---TTAA-----CCCTTTGTT-AAATAT---TT-CTGGGTCTTC--A-ATA----------TA--------TG-A------ATGCA---------------TC---C---C-----TTG--GAATGA-------ATAAA-T----TA-CCGGAAG--AC-T----AACTTC-CGT---ATGTTG-------ACTA-----GAGCTCG-CC-ATT-TTGAAATAAACTA-AA-AGA-T-G-GA-A---------ATAAT-CCCA-GCCAT-G-CTAT-CCGC-CATTTTTAT-TTTGGG-CTCTGACAGA--G--ATTTT-TGAT-TACGCA---G-TTTTGTAATCA-TTAATCGGAATCGGAAAG--GGTA-AA--CCGA-ACAA-TT--T--TT---------TATT--A-CA-ATCAATCATCAGCCCATca
gi|8 : TTATAATCGG--AAGTATCAA-----------------TTATT------GAT-TAA--TAAT-C-GGTTTTG-ATAAAA-------TTGA--G----GTCAC-------------C-TT-T---TTCA-----CCATTTGTTAAGACAT---TT-CTGG---TTC--T-ATA----------T----------ATG-----AATGGTGGATAAAGAAACAAATC---CAGACATTAATGG--GAACGA-------ATAAA-T----GA-CATGA---------------------------GTTG-------ACTA-----GAGTTCA-CC-ATT-TTGAAACGAACTG-AA-AGA-C-G-GA-A---------ACAAT-CCAG-GCCTT-G-CTAT-CCGC-CATTTCTAT-TTCCGG-CTCTGAC--ATCA--ACTTT-TGAT-TATGTA---A-TTTTGTAATCG-ATAATCAGACTCTGAAAG--ATTATAA--TCGA-TC-A-TTAATAATCAGACTGAAAGATT--A-TA-ATCTATTATTGGCCCATc
gi|9 : atggtttgaaa------GAT-TAACATAAT-T-C-TTTTA-ATT----------TTAA--GAAG----ACATTG-TT----------AT---T--A-----C------TTGGAAT------T-CTGGATGTT-------------------A--------T-TA-----TACG-----------------TC---C-------------------A-------GTAAAAT----TA-CAAGAA---AC--------CTTC-AG----GTGTTGTTACCTTACTAT----GAGCT-G-CC-ATTGTTGGAATAAACTATAG-AGA-T-G-GATG---------AACA---CGG-G-TAT-G-CTATCCCGC-CATTTTTAT-TTCTGG-CTCTTAC--A--GTTACTTT-CGATATATGCC---A---TTGTAA-CG-ATAATCGGAATCGGAAAATTGGAA-AA--CCGA-TCGA-TT--T--TC---------GATT--A-TT-AACG-TCA-CAGCCCATc
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGATAACAAATTTTAAAAACAACAATAATGTTA
Unaligned ( gi|20 ): AAATATGAGATCACCTCATTTGGGCAAACCAA