lowQualScore : 2 2 2 1 1 2 55 33 1 1 1 22 333333333 1 11 11111 1 5555555555555555555555 33333 1 1 11 11 55555555555555555555555555 1 44444444444 11 3333333333 777777777777777777777777 22222 111 1 4 4444 6666666 333 4 1 4444 44444 1 1 11 55555555555555 22222 11 66666666666666 55555 3333333333333333333333333333 11 11 333333 111 5555555555555555555555555 1 22222222 111111 1111 5555555555555555555555 2222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 444444444444 1111111
lowQualScore : 0 0 0 5 5 0 6 77 2 11 6 5 5 6 7 77 77 111111111 4 3 0 8 33 88888 7 0 9999999999999999999999 55555 3 33 0 0 66 77 00000000000000000000000000 0 3 44444444444 88 8888888888 4 4 888888888888888888888888 2 33333 777 0 0 7777 3333333 99 000 6 0 0 3 2222 44444 4 6 5 33 44444444444444 0 66666 0 8 00 66666666666666 3 3 22222 0 2222222222222222222222222222 11 8 8 77 6 222222 111 4 1 77 2222222222222222222222222 2 55555555 666666 2222 1 4444444444444444444444 7777 99 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 66 00000 5 5 5 5 0 999999999999 77 5 5 888 9999999
lowQualScore : . . . . . . . .. . .. . . . . . .. .. ......... . . . . .. ..... . . ...................... ..... . .. . . .. .. .......................... . . ........... .. .......... . . ........................ . ..... ... . . .... ....... .. ... . . . . .... ..... . . . .. .............. . ..... . . .. .............. . . ..... . ............................ .. . . .. . ...... ... . . .. ......................... . ........ ...... .... . ...................... .... .. .......................................................................................... .. ..... . . . . . ............ .. . . ... .......
lowQualScore : 0 0 0 5 5 0 0 00 5 00 0 0 0 0 0 55 00 000000000 0 3 2 8 88 22222 0 5 5555555555555555555555 88888 2 88 0 0 00 33 33333333333333333333333333 7 3 00000000000 33 3333333333 0 0 333333333333333333333333 5 88888 555 0 0 0000 5555555 00 000 0 0 0 2 8888 55555 2 5 5 22 22222222222222 8 88888 8 0 88 00000000000000 8 8 00000 8 6666666666666666666666666666 22 0 0 00 7 000000 777 3 7 99 5555555555555555555555555 0 77777777 111111 1111 7 3333333333333333333333 7777 22 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 99 55555 0 0 0 0 2 555555555555 00 0 0 888 8888888
consensus : NTATGCGATGCAATTTTGCAAAACCGATGTCAGCCTGAATTCATTAAAGTTGCTTTGCAAATACAAAAAAAGGTTCTANAAATATTTATTGACTACCTGATGTCAAAATCAAATCACAGACCTACATGTGAGAANNCAACGTGGANTAANGATT-TAAACTTGCACCGAAATTTTAATTGGAAAC--AT-GTA-TATANAAACATT-----ANATCTGT-------TTACAAAAGAT----TCAGGNCT-GATATGG-TTCAATTATAGAATTAT-TCAT-AGAAT-----ATTAGG-ACTAA-A----AA-TCTT-ACATATGTC-AAAAT-AA--AAA--AAAAT---CTNTC-CTGCTCANTNTGCGCACTTGAATCTGGAAGCA-ATC-AAGCA-ANCTTT---TTTT-TATTGCCCAT-CTGTATC----TAGTCTGTGAAGAACAAATTGNCAGATTGGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATTTAA-TGTACAAACTGTN-A-TTTTTGNTTTTTCAGAAAA-AGGAACACATTGTTTTAAATTTCATAA--TCC-----TCT-TAGTAAAGAGATATA--TATTCCAATTTTC-AAG-AAAAAANN--TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTAT---ATAA--TTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCA-AGTATT-TTAT---AAAAAGAAAT--GGT---------TCTAAA-TGGAAA-TGTCTTTT-------TCAATTAT-----TGAT----TATTATTTT---T------------------TTTTTC--TCA--TTATAATAATC-------CA--A-TGTGCA---TGT----ATTGTCTTTAGCA---C-TTTCT-TCAT-CC-------A-----G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-T-TG-TGCTGTAAA---------TTATGTTAAAA-A-A---AAAAA-----A-AAAAAA
Reference ( gi|1 ) : ATATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATATAAATTAAGGTTCTAGAAATATTTATTGACTACTTGATGTCAAAATCAAATCACCGATCTACTTGT--GAAAACAA-ATGGGCTTATGATT-TAAACTTGCATCGAAATTTTAATTGGAAAC--AT-GTA-TATAGAAACATT-----ACACCTGT-------TTACAAAAGAC----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-CCAT-AGAAT-----ATTAGGAACTAA-A----AATTCCT-ACATATGTCAAAAATAAA--AAA--AAAAT---CTCTCTTTGCTCAATATGC-CACTTTAATCTAGAAACACATCAAAGCA-ACCTTT---TTTT-TATTGCCCATACTGTATCT---TAGTCTGTG--G-AC-AATTGTTAGATT-G-ATTTTTGAAGAATC-GG-CAAAAGAATTGTATTAAAATGTACAAACTG-A-A-TTTTAGCTTTTTCAGAAAA-AGGAACACATTGTTTTAAATTTCATAA--T-C-----TCTATAGTAAAGAGATA-A--TATTCCAACTTTC-AAG-GAAAAGGT--TGCCGCATGTACTTTTGATGATTGTTTGTCAAAT-AACTTAT---AT-A--TTA-TACACCTTTAGAAG-AAA-AATTTAC-AGA-ACA-AG-ATT-TTAT---AAACAGAAAT--GGTC--------TCTAAATTGGAAAGTGTCTTTT-------TCAATTAT-----TGAT----TATTATTTT---T------------------TTTTCT--TCA--TTATAATAATC-------C---A-TGTGCA---TGCT--AATTGTCTTTAGT----C-TTTCT-TCAT-CC-------A-----G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-T-TG-TGCTGTAAAT--------TTTTGTTAAAA-A-A---AAAAA-----A-AAAAAA
gi|12 : TATGCGATGCAATTTT-CAAA-CC-ATGTCAGCCTGAATTCATTAAAGTT-CTTTGCAAATACAAA-AAAGGTTCTATAAATATTTA-TGACTACCTGATGTCAAAATCA
gi|6 : ATGCGATGCAATTTTGCAAAACCGATATCAGCCTGAAT-CATTAA-GTTGCTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGAT-TCAAAATCAAATCACAGACCTACATGTGAGAAAACAACAT-GACTAATGATTGTAACTTTGCATC-AAATTTTAATTGGAAAC--AT-AT--CATACAAACATT-----AAATCGGT-------T---AAAAGATCGGGTC-GGACTCGATATGGATTAAATTATAGAATTATATCAT--GAAT-----ATTAGAAA-TAC-AGACCAAATCTTGACATATGTC-AAAATAAAATAAG--AAAATTCCCTCTCTCT
gi|7 : TGT--GAATCCAA-GTGGAATAAAGAAC-TGAAGTTGAACGGTGATTTTGACTGGAAACAGAT-TCA-TA-AAAAATATTTTTCAATACTTATATAGTAGTAACAAAAGAT----ACAAATCT-GATATGG-TTCAATTTTAGAATTAT-TCAC-AGAATTCTGCA-TGGGCACAAACA----AGTACTT-GTTTATGTCCAAAATCGG--AAATGATAAT---TTA----TGTTCATTTTGT-CA----AA--TGGAAGC-------AG-A-AACTTT---CTTT-TATTGTTCAc
gi|2 : ATT-TAAACTTGCATCGAAATTTTAATTGGAAAC--AT-GTATTACAATAACATT-----ATAATTG--------TTACAAAAGA-----TCAGGCAT-GATATGG-TTCAATTATAGAATTAT-TCATAAAAAT-----ATTAGG-ACTAA-C----AA-TCCT-ACATATGTC-------AA--AAA--AAAAT---CTTTC-TTGCTCAATATGCGCACTTGAATC-AGAAACA-ATC-AAGCATATC-TT---TTTT-TATTGCCCAT-CTGTATC----TAGTCTGTG--GAACAAATTGTCAGATTGG-ATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTA-ATTTTTGGTTTTTTCAGAAAAGAGGAACACATTGTTTTAAATTTCATAA--TCC-----TCT-TAGTAAAG-GATATA--T-TTTCAATTTTC-AAG-AAAAATG---TGCC-CAT-TACTTTTG-TGA-TG-TTGTCAAAT--ACTTATTAAAT-A--CTA-CA-AC--TTAGAA--AAA-AATTTACAAGATATA-AG-TAT-TTAT---AAAAAAGAAT--GG----------TCTAAA-TGGAA--TGTC-TTT-------TCAATTAT-----TGATTATATATTATTAT---T------------------TTTTTC--TCA--TTATAATAATC-------CA--A-TGTACA---TGT----ATTGTCTTTAGCA---T-TTTCT-TCAT-CCAGTACTGA-----G------A---------GTGTGAG--TAA---GG-TGTAAA-----------------------------------TTAAAA-A-A---AAAAA-----A-AAAaa
gi|13 : aAACTTGCACCTAAATTTTAATTGGAAAC--ATCGTA-TATACAAACATT-----AAATCTG--------TTACAACAGAT----TCAGGATT-GATATGG-TTCAATTATAGAATTAT-TCAT-g
gi|3 : AAAACA-TCTTTTATATCTTGTATTGTCCGT-CTGATTCTAGATAGACTGTGAAG-A--AATTAGCAGATT-GGAGTTTTGAAAAATCTGGTCAACAC--TTGAATTTGA-TGTACAAACTGTT-A-TTCATGCTTTTCTAG-AAA-AGGAACACATGATTTTAAACTTTAAAA--T-TG----TCT-TCATAAAGAGATACA--TATTCCAATACTC-AAGAAAAAAAGT----CAATAT-TGCTTTTGGTG-T--TTTG--AAATCGGTTTAT---TTAA--TTGCTACA-TTTTAGAAA-TAA-AATCTAC-AAA-ACA-AGTATT-TCAC---AAAATGAAAT--GGTC--------T---AAGTGCAAA-TGTC-TTT-------TCAAATAA-----TGAT----AACAATTTT---C------------------TTTT---------TTACAATAAGCAGTAGAAC---A-TATACA---TG-------TGTGTTTTGTATCGC-CTTCT-TT-T-TA-------A-----A------A---------GAGTGCG---AAAGAGA-TGTATA-TGTAG-T-TG-TGTTGGAAATAATGAAAACATCATTAAAA-A-C---AAAAA-----C-AAAA
gi|17 : atAAGCA-A--TTT---TTTG-TATTGCCCAT-CTGTATC----TAGTCTGTcaaaa
gi|5 : cTTTTTGAAAAATCTGG-CAAAAGAAAGGTATTTAA-TGTACAAACTG-CTA-TTTTTGGTTTTTCAGAAAA--GGAACACATTGTTTTAAATTTCATAA--T-CCTCGATCT-TAGTAAAGAGGT--A--TATTCCAACTTTC-AAG-AAAAAATG--TGCT-TAT-TACTTTTGATGA-TG-TTGTCAAAT--ATTTAT---ATAA--TTACTACACC-TTAGAAG-AAA-AATTTAC-AGA-TCA-AGTATT-TTAC---AAAAAGAAAT--G
gi|4 : TTTGAAAAATCTGG-CAAAAGAATTGTATTTAA-TGTACAAACTGTA-A-TTTTTGGTTTTTCAG-AAA-AGGAACACTTTGTTTTAAATTTCATAA--TCC-----TCT-TAGTAAAGAGATATA--TATTACAATTTTC-AAG-AAAAAATG--TGCC-CATAT-CTTTTGATGA-TG-TTGTCAAAT--ACTTAT---ATAA--TTA-TA-A-CTTTAGAAGAAAA-AAATTAC-AGA-TCATA----T-TTAT---AAAAAGAAAT--GG----------TCTAAA-TGGAATTGGTC--TT-------TCAATTATTTATGTGAT----TATTATTCT---TAGTTATTATTGATTATTATTTTTTGCTCAATTTTTAATAATC-------CA--A-TGTTAA---TG-T--ATTTG--TTTAGCA---T-TTTCT-TCATACC-------GTAT--G------G---------ATG-GAGGTTAAAAAGGTTGTAAACTGTATCT-TG-TGCTGTAAA---------TTATG-TAGAA-A-A---AAAAA-----A-aatgtattttaatccaatgagcatgcattttctttacccagtatgagagtgtgagtaaaaggtgtaaatgtatttgtgctgtaaattatgtaaaaaataataaaaaagaaataaaaaaaa
gi|9 : ATTGTTTTACATTTCATAGGTC-C-----TCT-TAGTAGAGATATA-AAATATTCCAACTTTCGAAG-GAAAAAATGATGCC-C-TTTACTATTGATGA-TGGTTGTCAAAT-ATC-TAT---AT-AATTTC-TACACCTCAGAAAG-AAATAATTTAC-AGATCCA-AGTATTCTTATAAAAAACA-AAAT--G-----------TCTAAATGCGACA-TG-CTTTT-------CTA----------TGAT----TATTATt
gi|14 : A-ACA-AA---C-TTAT---GCTCAGCAAT--GGTCATACTATTTCTTCACAGGAAA-TGTCTTTT--------CAATTAA-----TGGT----CAT-ATTTT---T------------------TTTTTC--TTA--TTATAATAATC-------C---
gi|10 : gtaACAAGAATCAGAT---------TCTAAA-----AAATATCTTTT--------CAATTAT-----TGAT----TATTATTTT---T------------------TTTTC---TCA--TTATAATAATC-------CA--A-TGTGCA------------TGTCTATAGCA---T-TTTCT-TTAT-CC-------AGTAT-G------A---------GAGTGAG--TAAAA-GG-TGTAAA-TGTAT-T-TG-TGCTGTAAA---------TTATGTAAAAATA-A---AAAAATACATA-AAAAAA
gi|8 : atCTAAAT-GGAAA-TGTCTTTTCAATGTATTGATTAT-----TAAT----TATTAGTTTACAT------------------TTTTCG--TCA--TATTAATAATT-------CCGAA-T-TGCAAGGTGTTTAAATTGTCTTTAGA----CATTTCT-TCA--CC-------ATATGAG------A---------GTGTGAG--TAAA---G-TGTAAA-TGTAT-TGTGCTGCTGAAAAA--------TTATGTAAAAA-A-A---AAAAA-----ATAAAAAAaaag
gi|5 : TAATC-------C---AATGAGCA---TGC----ATTTTCTTTACC----C-AGT-----AT-G--------A-----G------A---------GTGTGAG--TAAAAGG--TGTAAA-TGTAT-T-TG-TGCTGTAAA---------TTATGTAAAAA-ATA---ATAAA-----A-AAGAAAaaaataaaaaaagtttct
gi|15 : tttttgaaaaatctggcaaaagaaaggtatttaatgtacaaactgctatttttggtttttcagaaaaggaacacattgttttaaatttcataatcctcgatcttagtaaagaggtatattccaactttcaagaaaaaatgtgcttattacttttgatgatgttgtcaaatatttatataattactacaccttagaagaaaaatttacagatcaagtattttacaaaaagaaatgaatgtatttTATTTTTAAT----T-TTT-----AT-CC-------A-----GTATGAGA---------GTGTGAG--TAAAAG---TGTAAA-TGTAT-T-TG-TGTTGTAAA---------TTATG-TAAAC-A-ATATAAATA-----T-AAAAAAtaaaaaaaa
gi|11 : aa-TTTCTGTCAT-CCC------A-----G------ATATGCGTACGTGTGAG--TAAAAGG--TGTAAA-TGTAT-T-TG-TGCTGTAAAG--------TTATGGTAAAA-A-A---AAAAA-----ATAAAAAAtaaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ACTGTAAACAAACTTATGCTCAGCATGGTAATTACTGTTTCTTCACAGGAA
Unaligned ( gi|18 ): TTGAATCAGAAACAATCAAGCATATCTTTTTGTGTATTG
Alignments
lowQualScore : 2 2222 2 2 2 11 22 1 111 11 22222 333333333 22222 2222222 11 333333 111 1 1 1 444444444444 11111 22 11 11111 11111 1 1 11111 222 22 222 22 1111 111 1 11 11 333 1 111111 11111 444444444444444444 11111 1111111 111 222222 1111 5555555555555555555555555555 11 2222222222 1111111
lowQualScore : 3 7777 0 7 7 3 0 3 1 3 6 3 4 99 44 6 1 1 0 5 8 111 11 1 11 00000 1 2 0 222222222 33333 0 1 8 8 8 3 6666666 00 222222 111 0 0 0 666666666666 88888 1 1 11 0 3 77 2 11111 999 66666 6 3 0 0 88888 999 22 1 888 0 8 0 8 44 8 1 88 6 1 4444 6 1 111 7 99 1 888 6 6 1 6 3 55 3 44 6 7 77 6 6 44 7 6 99 111 55 4 4 4 2 9 8 333333 9999 999 22222 555555555555555555 66666 77 66 7777777 000 111111 4 5 0000 4 4 4444444444444444444444444444 66 0 55 4 66 9999 8 2222222222 4 4 777 6666666
lowQualScore : . .... . . . . . . . . . . . .. .. . . . . . . ... .. . .. ..... . . . ......... ..... . . . . . . ....... .. ...... ... . . . ............ ..... . . .. . . .. . ..... ... ..... . . . . ..... ... .. . ... . . . . .. . . .. . . .... . . ... . .. . ... . . . . . .. . .. . . .. . . .. . . .. ... .. . . . . . . ...... .... ... ..... .................. ..... .. .. ....... ... ...... . . .... . . ............................ .. . .. . .. .... . .......... . . ... .......
lowQualScore : 3 0000 7 3 3 3 7 7 0 7 7 0 0 77 00 7 0 0 0 0 0 888 66 0 00 00000 0 2 8 444444444 00000 8 0 0 0 0 2 0000000 22 222222 000 0 0 0 555555555555 88888 0 0 77 2 2 55 0 00000 555 77777 7 0 0 0 55555 000 00 0 333 8 0 8 0 88 0 0 44 7 0 2222 7 7 777 3 22 7 777 7 7 7 7 3 88 5 33 7 3 77 7 7 33 3 7 22 111 11 4 4 4 8 0 9 444444 4444 999 55555 666666666666666666 66666 99 99 0000000 000 666666 3 7 1111 4 4 9999999999999999999999999999 11 8 77 4 22 4444 9 3333333333 4 4 888 6666666
consensus : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATAC-AAAAAAGGTTCTAGAAATATTTA-TGACTACCTGATGTCAAAATCAAATCACNGACCTACNTGTGAGAA--CAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTTA-------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT---AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ANCTTTT-----T-TNTATTGCCCAT-CTGTATC-TAG-T---CTGTG--GAAC-AATTGTCAGATTGG-ATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTT-GNTTTTTCAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
Reference ( family-5463 ) : NTATGCGATGCAATTTTGCAAAACCGATGTCAGCCTGAATTCATTAAAGTTGCTTTGCAAATACAAAAAAAGGTTCTANAAATATTTATTGACTACCTGATGTCAAAATCAAATCACAGACCTACATGTGAGAANNCAACGTGGANTAANGATT-TAAACTTGCACCGAAATTTTAATTGGAAACAT-GT--ATATANAA--ACATT-----ANATCTGTTTA-------CAAAAGAT----TCAGGNCT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CTT-ACATATGT-C-AAAAT---AAAA----AAAAATCTNTC-CTGCTCANTNTGCGCACTTGAATCTGGAAGCA-ATC-AAGCA-ANCTTTT-----T-TTTATTGCCCAT-CTGTATC-TAG-T---CTGTGAAGAACAAATTGNCAGATTGGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTNATTTTT-GNTTTTTCAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAATTTTCAA--GAAAAAANN-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGGT-TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|1 : TATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATATAAATTAAGGTTCTAGAAATATTTATTGACTACTTGATGTCAAAATCAAATCACCGATCTACTTGTGAAAA--CAA-ATGGGCTTATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATAGAA--ACATT-----ACACCTGTTTA-------CAAAAGAC----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-CCATAGAA-T-----ATTAGGAACTA-A----AAATT-CCT-ACATATGT-CAAAAATA--AAAA----AAAAATCTCTCTTTGCTCAATATGC-CACTTTAATCTAGAAACACATCAAAGCA-ACCTTTT-----T-TTTATTGCCCATACTGTATCTTAG-T---CTGT---GGAC-AATTGTTAGATT--GATTTTTGAAGAATC-GG-CAAAAGAATTGTATTAAAATGTACAAACTG-AATTTTA-GCTTTTTCAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-T-CTC----TATAGTAAAGAGATA-A---TATTCCAACTTTCAA--GGAAAAGGT-TGCCGCATGTACTTTTGATGATTGTTTGTCAAATA-ACTTATAT-ATTA-TACACCTTTAGAAG-AAA-AATTTAC-AGA-ACAAG-ATT-TTATAAACA--GAAATGGTCTCTAAATTG-GAAAGT-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTC--T-TCA--TTATAATAATC--C-------ATGTGCA---TGCTA--ATTGTCTT-TAGT--C-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAATTTTTG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|10 : aGAT-TCTAAA-----AAA-T-ATCTTTT-CAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTT---C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT---------CTA-TAGC-AT-TTTCT-TTAT-CC-------A---GTATG--A---------GAGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAATA-A---AAAAATACATA-AAAAAA
gi|11 : atacaagaatcaC-AT-TTTCTGTCAT-CCC------A---G------ATATGCGTACGTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAAGTTATG---------GTAAAA-A-A---AAAAA-----ATAAAAAAaaag
gi|12 : gcTATGCGATGCAATTTT-CAAA-CC-ATGTCAGCCTGAATTCATTAAAGTT-CTTTGCAAATAC-AAAAAAGGTTCTATAAATATTTA-TGACTACCTGATGTCAAAATCAattctctgccaaaaaaaaa
gi|13 : AACTTGCACCTAAATTTTAATTGGAAACATCGT--ATATACAA--ACATT-----AAATCTG-TTA-------CAACAGAT----TCAGGATT-GATATGG-TTCAATTATAGAATTAT-TCAT
gi|14 : G-GAAA-T-GTCTTTT-CAAT-TAA-----TGGT----CAT---ATT-----TTT------------------TTTTT--C-TTA--TTATAATAATC--C--
gi|15 : gtaaacaaacttatgctcagcaatggtcatactatttcttcacaTTT-TTAT-CC-------A---GTATGAGA---------GTGTGAG--TAAAAG---TGTAAA-TGTAT-TTGTGTTGT----AAA-TTATG----------TAAAC-A-ATATAAATA-----T-AAAAAA
gi|17 : aatatttttaaC-AAGCA-A--TTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTtaaa
gi|18 : TTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----TGTGTATTG
gi|2 : ATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--AT-TACAATAACATT-----ATAATTGTT-A-------CAAAAGAT-----CAGGCAT-GATATGG-TTCAATTATAGAATTAT-TCATAAAAAT-----ATTAGG-ACTA-A----CAA-T-CCT-ACATATGT-C-AAAA------------AAAAATCTTTC-TTGCTCAATATGCGCACTTGAATC-AGAAACA-ATC-AAGCA-TATCTTT-----T-TTTATTGCCCAT-CTGTATC-TAG-T---CTGTG--GAACAAATTGTCAGATTGG-ATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTTTCAGAAAAGAGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAG-GATATA---T-TTTCAATTTTCAA--G-AAAAATG-TGCC-CAT-TACTTTTG-TGA-TG-TTGTCAAAT--ACTTAT-TAAATACTACAAC-TTAGAA--AAA-AATTTACAAGATATAAGTA-T-TTATAAAAA--AGAATGG--TCTAAA-TG-G-AA-T-GTC-TTTTCAAT-TAT-----TGATTATATAT-T-ATT-----ATT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTACA---TGT----ATTGTCTT-TAGC-AT-TTTCT-TCAT-CCAGTACTGA---G------A---------GTGTGAG--TAA---GG-TGTAAA--------------------------------------TTAAAA-A-A---AAAAA-----A-AAA
gi|3 : a-ATCTTTTATATCT-TGTATTGTCCGT-CTGATTC-TAGATAGACTGTGAAGAA---ATTAGCAGATTGG-AGTTTTGAAAAATCTGGTCAACAC--TTGAATT-TGATGTACAAACTGTTATTCAT-GCTTTTCTAGAAAA--GGAACACATGATTTTAAACTTTAAAA-TTGTC----T-TCATAAAGAGATACA---TATTCCAATACTCAA--GAAAAAAAG-TCAA-TAT-TGCTTTTGGTG--TT-TTG--AAATCGGTTTATTTAATTGCTACA-TTTTAGAAA-TAA-AATCTAC-AAA-ACAAGTATT-TCACAAAAT--GAAATGG--TCTAAG-TG-CAAA-T-GTC-TTTTCAAA-TAA-----TGAT----AAC-A-ATT-----TTC------------------TTTT----------TTACAATAAGCAGT--AGAACATATACA---TGT----G-TGTTTTGTATC-GC-CTTCT-TT-T-TA-------A---A------A---------GAGTGCG---AAAGAGA-TGTATA-TGTAG-TTGTGTTGG----AAA-TAATGAAAACATCATTAAAA-A-C---AAAAA-----C-AAAAg
gi|4 : ataaaacTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTT-GGTTTTTCAGAAAA--GGAACACTTTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTACAATTTTCAA--GAAAAAATG-TGCC-CAT-ATCTTTTGATGA-TG-TTGTCAAAT--ACTTATATAAT---TATAACTTTAGAAGAAAA-AAATTAC-AGA-TCA--TA-T-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAT-TGGTC--TTTCAAT-TATTTATGTGAT----TAT-T-ATT-----CTTAGTTATTATTGATTATTATTTTTTGC-TCAATTTTTAATAATC--C--A----ATGTTAA---TGT----ATT-TGTT-TAGC-AT-TTTCT-TCATACC-------GTATG------G---------ATG-GAGGTTAAAAAGGTTGTAAACTGTATCTTGTGCTGT----AAA-TTATG----------TAGAA-A-A---AAAAA-----A-caaaa
gi|5 : TTTTTGAAAAATCTGG-CAAAAGAAAGGTATT-TAATGTACAAACTGCTATTTTT-GGTTTTTCAGAAAA--GGAACACATTGTTTTAAATTTCATAA-TCCTCGATCT-TAGTAAAGAGGTATA---T--TCCAACTTTCAA--GAAAAAATG-TGCT-TAT-TACTTTTGATGA-TG-TTGTCAAAT--ATTTATATAATTACTACACC-TTAGAAG-AAA-AATTTAC-AGA-TCAAGTATT-TTACAAAAA--GAAATG---------------AA-T-GTATTTT--AATCCAA-----TGAG----CATGC-ATT-----TTC------------------TTTt
gi|5 : TAATC--C--A----ATGAGCA---TGC----ATTTTCTT-TACCCAG-T-------AT-G--------A---G------A---------GTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAA-ATA---ATAAA-----A-AAGAAAacccagtatgagagtgtgagtaaaaggtgtaaatgtatttgtgctgtaaattatgtaaaaaataataaaaaagaaataaaaaaaa
gi|6 : tttttgaaaaatctggcaaaagaaaggtatttaatgtacaaactgctatttttggtttttcagaaaaggaacacattgttttaaatttcataatcctcgatcttagtaaagaggtatattccaactttcaagaaaaaatgtgcttattacttttgatgatgttgtcaaatatttatataattactacaccttagaagaaaaatttacagatcaagtattttacaaaaagaaatgaatgtatttATGCGATGCAATTTTGCAAAACCGATATCAGCCTGAA-TCATT-AAGTTGCTTTGTAAATAC-AAAAAAGGTTCTAGAAATATTTA-TGACTACCTGAT-TCAAAATCAAATCACAGACCTACATGTGAGAAAACAACAT-GACTAATGATTGTAACTTTGCATC-AAATTTTAATTGGAAACAT-AT---CATACAA--ACATT-----AAATCGGTT----------AAAAGATCGGGTC-GGACTCGATATGGATTAAATTATAGAATTATATCAT-GAA-T-----ATTAGA-AATACAGACCAAA-T-CTTGACATATGT-C-AAAAT---AAAATAAGAAAATTCCCTC-TCTCTCtaaaaaaaa
gi|7 : TGTGAATCCAA-GTGGAATAAAGAAC-TGAAGTTGAACGGTGATTTTGACTGGAAACAG-ATTCATA-AAAA--ATATTTTTCAATACTTATATAGTAGTAACAAAAGAT----ACAAATCT-GATATGG-TTCAATTTTAGAATTAT-TCACAGAA-TTCTGCATGGGC-ACAA-AC---AAG-TACTT-GTTTATGTCC-AAAATCGGAAAT----GATAATTTA----TGTTCATTTTG-----TCAAA--TGGAAGCA-G-------A-AACTTTC-----T-TTTATTGTTCA
gi|8 : CTAAA-TG-GAAA-T-GTC-TTTTCAATGTAT-----TGAT----TAT-TAATTATTAGTTTACA---------------TTTTT--CGTCA--TATTAATAATT--CCGA----AT-TGCAAGGTGTTTAAATTGTCTT-TAG--ACATTTCT-TCA--CCATATG--A---G------A---------GTGTGAG--TAAA---G-TGTAAA-TGTA--TTGTGCTGCTGAAAAA-TTATG---------TAAAAA-A-A---AAAAA-----ATAAAAAAaa
gi|9 : ATTGTTTTACATTTCATAGGTCCTC----T-TAGTA--GAGATATAAAATATTCCAACTTTCGAAGGAAAAAATGATGCC-CTT-TACTATTGATGA-TGGTTGTCAAAT--ATCTATATAATTTCTACACCTCAGAAAG-AAATAATTTAC-AGATCCAAGTATTCTTATAAAAAACAAAATG---TCTAAA-TGCGACA-T-G-CTTTTCTA-----------TGAT----TAT-T-ATaaaataaaaaaagtttct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTGTAAACAAACTTATGCTCAGCATGGTAATTACTGTTTCTTCACAGGAA
Alignments
lowQualScore : 1 1 1 1 1 1 111 1 1 111 11 22222 333333333 22222 2222222 11 333333 111 1 1 1 3333333333 1 22 1 11111 1 11111 1 1 11111 1 22 1111 11111 1 11 11 1 111111 11111 444444444444444444 11111 1111111 111 222222 1111 5555555555555555555555555555 11 2222222222 1111111
lowQualScore : 3 3 3 7 7 3 3 3 6 1 1 999 3 6 0 5 8 111 11 11 00000 1 1 0 222222222 33333 0 1 8 8 8 3 6666666 00 222222 111 0 0 0 6666666666 1 0 00 22 3 5 11111 3 7 66666 6 7 0 0 88888 7 3 6 0 8 0 8 55 1 8 88 6 1 4444 6 1 44444 99 1 6 6 6 1 6 3 55 3 44 6 7 77 6 6 44 7 6 99 77 55 4 4 4 2 9 8 333333 9999 999 22222 555555555555555555 66666 77 66 7777777 000 111111 4 5 0000 4 4 4444444444444444444444444444 66 0 55 4 66 9999 8 2222222222 4 4 777 6666666
lowQualScore : . . . . . . . . . . . ... . . . . . ... .. .. ..... . . . ......... ..... . . . . . . ....... .. ...... ... . . . .......... . . .. .. . . ..... . . ..... . . . . ..... . . . . . . . .. . . .. . . .... . . ..... .. . . . . . . . .. . .. . . .. . . .. . . .. .. .. . . . . . . ...... .... ... ..... .................. ..... .. .. ....... ... ...... . . .... . . ............................ .. . .. . .. .... . .......... . . ... .......
lowQualScore : 3 3 3 3 3 3 3 3 7 0 0 000 3 7 0 0 0 888 66 00 00000 0 4 8 444444444 00000 8 0 0 0 0 2 0000000 22 222222 000 0 0 0 0000000000 2 0 00 22 2 5 00000 3 5 77777 7 5 0 0 55555 3 3 7 8 0 8 0 22 0 0 44 7 0 2222 7 7 00000 22 7 7 7 7 7 7 3 88 5 33 7 3 77 7 7 33 3 7 22 99 11 4 4 4 8 0 9 444444 4444 999 55555 666666666666666666 66666 99 99 0000000 000 666666 3 7 1111 4 4 9999999999999999999999999999 11 8 77 4 22 4444 9 3333333333 4 4 888 6666666
consensus : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGTGAA--AACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTTA-------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
Reference ( family-5463 ) : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGTGAG--AACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTTA-------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ANCTTTT-----T-TNTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGNTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|1 : TATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATATAAATTAAGGTTCTAGAAATATTTATTGACTACTTGATGTCAAAATCAAATCACCGATCTACTTGTGAA--AACAA-ATGGGCTTATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATAGAA--ACATT-----ACACCTGTTTA-------CAAAAGAC----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-CCATAGAA-T-----ATTAGGAACTA-A----AAATT-CCT-ACATATGT-CAAAAATAAAAA----AAAAATCTCTCTTTGCTCAATATGC-CACTTTAATCTAGAAACACATCAAAGCA-ACCTTTT-----T-TTTATTGCCCATACTGTATCTTAG-T---CTGTGG-ACAA-TTGTTAGATT-GATTTTTGAAGAATC-GG-CAAAAGAATTGTATTAAAATGTACAAACTG-AATTTTAGCTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-T-CTC----TATAGTAAAGAGATA-A---TATTCCAACTTTCAA--GGAAAAGGT-TGCCGCATGTACTTTTGATGATTGTTTGTCAAATA-ACTTATAT-ATTA-TACACCTTTAGAAG-AAA-AATTTAC-AGA-ACAAG-ATT-TTATAAACA--GAAATGGTCTCTAAATTG-GAAAGT-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTC--T-TCA--TTATAATAATC--C-------ATGTGCA---TGCTA--ATTGTCTT-TAGT--C-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAATTTTTG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|10 : a--TCTAAA-----AAA-T-ATCTTTT-CAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTT---C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT---------CTA-TAGC-AT-TTTCT-TTAT-CC-------A---GTATG--A---------GAGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAATA-A---AAAAATACATA-AAAAAA
gi|11 : atacaagaatcagatC-AT-TTTCTGTCAT-CCC------A---G------ATATGCGTACGTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAAGTTATG---------GTAAAA-A-A---AAAAA-----ATAAAAAAaaag
gi|12 : gcTATGCGATGCAATTTT-CAAA-CC-ATGTCAGCCTGAATTCATTAAAGTT-CTTTGCAAATACAAAA-AAGGTTCTATAAATATTTAT-GACTACCTGATGTCAAAATCAattctctgccaaaaaaaaa
gi|13 : AACTTGCACCTAAATTTTAATTGGAAACATCGT--ATATACAA--ACATT-----AAATCTG-TTA-------CAACAGAT----TCAGGATT-GATATGG-TTCAATTATAGAATTAT-TCAT
gi|14 : G-GAAA-T-GTCTTTT-CAAT-TAA-----TGGT----CAT---ATT-----TTT------------------TTTTT--C-TTA--TTATAATAATC--C--
gi|15 : gtaaacaaacttatgctcagcaatggtcatactatttcttcacaTTT-TTAT-CC-------A---GTATGAGA---------GTGTGAG--TAAAAG---TGTAAA-TGTAT-TTGTGTTGT----AAA-TTATG----------TAAAC-A-ATATAAATA-----T-AAAAAA
gi|17 : aatatttttaaC-AAGCA-A--TTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTtaaa
gi|18 : TTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----TGTGTATTG
gi|2 : ATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--AT-TACAATAACATT-----ATAATTGTT-A-------CAAAAGAT-----CAGGCAT-GATATGG-TTCAATTATAGAATTAT-TCATAAAAAT-----ATTAGG-ACTA-A----CAA-T-CCT-ACATATGT-C-AAAA----------AAAAATCTTTC-TTGCTCAATATGCGCACTTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----T-T-TATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAAATTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTTTCAGAAAAGAGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAG-GATATA---T-TTTCAATTTTCAA--GAAAAA-TG-TGCC-CAT-TACTTTTG-TGA-TG-TTGTCAAAT--ACTTAT-TAAATACTACAAC-TTAGAA--AAA-AATTTACAAGATATAAGTA-T-TTATAAAAA--AGAATGG--TCTAAA-TG-G-AA-T-GTC-TTTTCAAT-TAT-----TGATTATATAT-T-ATT-----ATT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTACA---TGT----ATTGTCTT-TAGC-AT-TTTCT-TCAT-CCAGTACTGA---G------A---------GTGTGAG--TAA---GG-TGTAAA--------------------------------------TTAAAA-A-A---AAAAA-----A-AAA
gi|3 : a-ATCTTTTATATCT-TGTATTGTCCGT-CTGATTC-TAGATAGACTGTGAAGAAA-TTAGCAGATTGGAGTTTTGAAAAATCTGGTCAACAC--TTGAATT-TGATGTACAAACTGTTATTCATGCTTTTC-TAGAAAA--GGAACACATGATTTTAAACTTTAAAA-TTGTC----T-TCATAAAGAGATACA---TATTCCAATACTCAA--GAAAAAAAG-TCAA-TAT-TGCTTTTGGTG--TT-TTG--AAATCGGTTTATTTAATTGCTACA-TTTTAGAAA-TAA-AATCTAC-AAA-ACAAGTATT-TCACAAAAT--GAAATGG--TCTAAG-TG-CAAA-T-GTC-TTTTCAAA-TAA-----TGAT----AAC-A-ATT-----TTC------------------TTTT----------TTACAATAAGCAGT--AGAACATATACA---TGT----G-TGTTTTGTATC-GC-CTTCT-TT-T-TA-------A---A------A---------GAGTGCG---AAAGAGA-TGTATA-TGTAG-TTGTGTTGG----AAA-TAATGAAAACATCATTAAAA-A-C---AAAAA-----C-AAAAg
gi|4 : ataaaacTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA--GGAACACTTTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTACAATTTTCAA--GAAAAAATG-TGCC-CAT-ATCTTTTGATGA-TG-TTGTCAAAT--ACTTATATAAT---TATAACTTTAGAAGAAAA-AAATTAC-AGA-TCA--TA-T-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAT-TGGTC--TTTCAAT-TATTTATGTGAT----TAT-T-ATT-----CTTAGTTATTATTGATTATTATTTTTTGC-TCAATTTTTAATAATC--C--A----ATGTTAA---TGT----ATT-TGTT-TAGC-AT-TTTCT-TCATACC-------GTATG------G---------ATG-GAGGTTAAAAAGGTTGTAAACTGTATCTTGTGCTGT----AAA-TTATG----------TAGAA-A-A---AAAAA-----A-caaaa
gi|5 : TTTTTGAAAAATCTGG-CAAAAGAAAGGTATT-TAATGTACAAACTGCTATTTTTGGTTTTT-CAGAAAA--GGAACACATTGTTTTAAATTTCATAA-TCCTCGATCT-TAGTAAAGAGGTATA-----TTCCAACTTTCAA--GAAAAAATG-TGCT-TAT-TACTTTTGATGA-TG-TTGTCAAAT--ATTTATATAATTACTACACC-TTAGAAG-AAA-AATTTAC-AGA-TCAAGTATT-TTACAAAAA--GAAATG---------------AA-T-GTATTTT--AATCCAA-----TGAG----CATGC-ATT-----TTC------------------TTTt
gi|5 : TAATC--C--A----ATGAGCA---TGC----ATTTTCTT-TACCCAG-T-------AT-G--------A---G------A---------GTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAA-ATA---ATAAA-----A-AAGAAAacccagtatgagagtgtgagtaaaaggtgtaaatgtatttgtgctgtaaattatgtaaaaaataataaaaaagaaataaaaaaaa
gi|6 : tttttgaaaaatctggcaaaagaaaggtatttaatgtacaaactgctatttttggtttttcagaaaaggaacacattgttttaaatttcataatcctcgatcttagtaaagaggtatattccaactttcaagaaaaaatgtgcttattacttttgatgatgttgtcaaatatttatataattactacaccttagaagaaaaatttacagatcaagtattttacaaaaagaaatgaatgtatttATGCGATGCAATTTTGCAAAACCGATATCAGCCTGAAT-CATTAA-GTTGCTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGAT-TCAAAATCAAATCACAGACCTACATGTGAGAAAACAACAT-GACTAATGATTGTAACTTTGCATC-AAATTTTAATTGGAAACAT-AT---CATACAA--ACATT-----AAATCGGTT----------AAAAGATCGGGTC-GGACTCGATATGGATTAAATTATAGAATTATATCAT-GAA-T-----ATTAGA-AATACAGACCAAA-T-CTTGACATATGT-C-AAAAT-AAAATAAGAAAATTCCCTC-TCTCTCtaaaaaaaa
gi|7 : TGTGAA--TCCAA-GTGGAATAAAGAAC-TGAAGTTGAACGGTGATTTTGACTGGAAACAG-ATTCATA-AAAA--ATATTTTTCAATACTTATATAGTAGTAACAAAAGAT----ACAAATCT-GATATGG-TTCAATTTTAGAATTAT-TCACAGAA-TTCTGCATGGGC-ACAA-AC---AAG-TACTT-GTTTATGTCC-AAAAT-CGGA----AATGATAATTT-ATGTTCATTTTG-----TCAAA--TGGAAGCA-G-------A-AACTTTC-----T-TTTATTGTTCA
gi|8 : CTAAA-TG-GAAA-T-GTC-TTTTCAATGTAT-----TGAT----TAT-TAATTATTAGTTTACA---------------TTTTT--CGTCA--TATTAATAATT--CCGA----AT-TGCAAGGTGTTTAAATTGTCTT-TAG--ACATTTCT-TCA--CCATATG--A---G------A---------GTGTGAG--TAAA---G-TGTAAA-TGTA--TTGTGCTGCTGAAAAA-TTATG---------TAAAAA-A-A---AAAAA-----ATAAAAAAaa
gi|9 : ATTGTTTTACATTTCATAGGTCCTC----T-TAGTA--GAGATATAAAATATTCCAACTTTCGAAGGAAAAAATGATGCC-CTT-TACTATTGATGA-TGGTTGTCAAAT--ATCTATATAATTTCTACACCTCAGAAAG-AAATAATTTAC-AGATCCAAGTATTCTTATAAAAAACAAAAT-G--TCTAAA-TGCGACA-T-G-CTTTTCTA-----------TGAT----TAT-T-ATaaaataaaaaaagtttct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTGTAAACAAACTTATGCTCAGCATGGTAATTACTGTTTCTTCACAGGAA
Alignments
lowQualScore : 1 1 1 1 1 1 11 1 1 111 11 22222 333333333 22222 2222222 11 333333 111 1 1 1 3333333333 1 22 1 11111 1 11111 1 1 11111 1 22 1111 11111 1 11 11 1 111111 11111 444444444444444444 11111 1111111 111 222222 1111 5555555555555555555555555555 11 2222222222 1111111
lowQualScore : 3 3 3 7 7 3 3 3 6 1 1 88 3 6 0 5 8 111 11 11 00000 1 1 0 222222222 33333 0 1 8 8 8 3 6666666 00 222222 111 0 0 0 6666666666 1 0 00 22 3 5 11111 3 66666 6 6 0 0 88888 7 3 6 0 8 0 8 55 8 88 6 1 4444 6 1 44444 99 1 6 6 6 1 6 3 55 3 44 6 7 77 6 6 44 7 6 99 77 55 4 4 4 2 9 8 333333 9999 999 22222 555555555555555555 66666 77 66 7777777 000 111111 4 5 0000 4 4 4444444444444444444444444444 66 0 55 4 66 9999 8 2222222222 4 4 777 6666666
lowQualScore : . . . . . . . . . . . .. . . . . . ... .. .. ..... . . . ......... ..... . . . . . . ....... .. ...... ... . . . .......... . . .. .. . . ..... . ..... . . . . ..... . . . . . . . .. . .. . . .... . . ..... .. . . . . . . . .. . .. . . .. . . .. . . .. .. .. . . . . . . ...... .... ... ..... .................. ..... .. .. ....... ... ...... . . .... . . ............................ .. . .. . .. .... . .......... . . ... .......
lowQualScore : 3 3 3 3 3 3 3 3 7 0 0 33 3 7 0 0 0 888 66 00 00000 0 4 8 444444444 00000 8 0 0 0 0 2 0000000 22 222222 000 0 0 0 0000000000 2 0 00 22 2 5 00000 3 77777 7 7 0 0 55555 3 3 7 8 0 8 0 22 0 44 7 0 2222 7 7 00000 22 7 7 7 7 7 7 3 88 5 33 7 3 77 7 7 33 3 7 22 99 11 4 4 4 8 0 9 444444 4444 999 55555 666666666666666666 66666 99 99 0000000 000 666666 3 7 1111 4 4 9999999999999999999999999999 11 8 77 4 22 4444 9 3333333333 4 4 888 6666666
consensus : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGT--GAAAACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTTA-------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
Reference ( family-5463 ) : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGT--GAAAACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTTA-------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|1 : TATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATATAAATTAAGGTTCTAGAAATATTTATTGACTACTTGATGTCAAAATCAAATCACCGATCTACTTGT--GAAAACAA-ATGGGCTTATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATAGAA--ACATT-----ACACCTGTTTA-------CAAAAGAC----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-CCATAGAA-T-----ATTAGGAACTA-A----AAATT-CCT-ACATATGT-CAAAAATAAAAA----AAAAATCTCTCTTTGCTCAATATGC-CACTTTAATCTAGAAACACATCAAAGCA-ACCTTTT-----T-TTTATTGCCCATACTGTATCTTAG-T---CTGTGG-ACAA-TTGTTAGATT-GATTTTTGAAGAATC-GG-CAAAAGAATTGTATTAAAATGTACAAACTG-AATTTTAGCTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-T-CTC----TATAGTAAAGAGATA-A---TATTCCAACTTTCAA--GGAAAAGGT-TGCCGCATGTACTTTTGATGATTGTTTGTCAAATA-ACTTATAT-ATTA-TACACCTTTAGAAG-AAA-AATTTAC-AGA-ACAAG-ATT-TTATAAACA--GAAATGGTCTCTAAATTG-GAAAGT-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTC--T-TCA--TTATAATAATC--C-------ATGTGCA---TGCTA--ATTGTCTT-TAGT--C-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAATTTTTG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|10 : a--TCTAAA-----AAA-T-ATCTTTT-CAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTT---C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT---------CTA-TAGC-AT-TTTCT-TTAT-CC-------A---GTATG--A---------GAGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAATA-A---AAAAATACATA-AAAAAA
gi|11 : atacaagaatcagatC-AT-TTTCTGTCAT-CCC------A---G------ATATGCGTACGTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAAGTTATG---------GTAAAA-A-A---AAAAA-----ATAAAAAAaaag
gi|12 : gcTATGCGATGCAATTTT-CAAA-CC-ATGTCAGCCTGAATTCATTAAAGTT-CTTTGCAAATACAAAA-AAGGTTCTATAAATATTTAT-GACTACCTGATGTCAAAATCAattctctgccaaaaaaaaa
gi|13 : AACTTGCACCTAAATTTTAATTGGAAACATCGT--ATATACAA--ACATT-----AAATCTG-TTA-------CAACAGAT----TCAGGATT-GATATGG-TTCAATTATAGAATTAT-TCAT
gi|14 : G-GAAA-T-GTCTTTT-CAAT-TAA-----TGGT----CAT---ATT-----TTT------------------TTTTT--C-TTA--TTATAATAATC--C--
gi|15 : gtaaacaaacttatgctcagcaatggtcatactatttcttcacaTTT-TTAT-CC-------A---GTATGAGA---------GTGTGAG--TAAAAG---TGTAAA-TGTAT-TTGTGTTGT----AAA-TTATG----------TAAAC-A-ATATAAATA-----T-AAAAAA
gi|17 : aatatttttaaC-AAGCA-AT--TTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTtaaa
gi|18 : TTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----TGTGTATTG
gi|2 : ATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--AT-TACAATAACATT-----ATAATTGTT-A-------CAAAAGAT-----CAGGCAT-GATATGG-TTCAATTATAGAATTAT-TCATAAAAAT-----ATTAGG-ACTA-A----CAA-T-CCT-ACATATGT-C-AAAA----------AAAAATCTTTC-TTGCTCAATATGCGCACTTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----T-T-TATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAAATTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTTTCAGAAAAGAGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAG-GATATA---T-TTTCAATTTTCAA--GAAAAA-TG-TGCC-CAT-TACTTTTG-TGA-TG-TTGTCAAAT--ACTTAT-TAAATACTACAAC-TTAGAA--AAA-AATTTACAAGATATAAGTA-T-TTATAAAAA--AGAATGG--TCTAAA-TG-G-AA-T-GTC-TTTTCAAT-TAT-----TGATTATATAT-T-ATT-----ATT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTACA---TGT----ATTGTCTT-TAGC-AT-TTTCT-TCAT-CCAGTACTGA---G------A---------GTGTGAG--TAA---GG-TGTAAA--------------------------------------TTAAAA-A-A---AAAAA-----A-AAA
gi|3 : a-ATCTTTTATATCT-TGTATTGTCCGT-CTGATTC-TAGATAGACTGTGAAGAAA-TTAGCAGATTGGAGTTTTGAAAAATCTGGTCAACAC--TTGAATT-TGATGTACAAACTGTTATTCATGCTTTTC-TAGAAAA--GGAACACATGATTTTAAACTTTAAAA-TTGTC----T-TCATAAAGAGATACA---TATTCCAATACTCAA--GAAAAAAAG-TCAA-TAT-TGCTTTTGGTG--TT-TTG--AAATCGGTTTATTTAATTGCTACA-TTTTAGAAA-TAA-AATCTAC-AAA-ACAAGTATT-TCACAAAAT--GAAATGG--TCTAAG-TG-CAAA-T-GTC-TTTTCAAA-TAA-----TGAT----AAC-A-ATT-----TTC------------------TTTT----------TTACAATAAGCAGT--AGAACATATACA---TGT----G-TGTTTTGTATC-GC-CTTCT-TT-T-TA-------A---A------A---------GAGTGCG---AAAGAGA-TGTATA-TGTAG-TTGTGTTGG----AAA-TAATGAAAACATCATTAAAA-A-C---AAAAA-----C-AAAAg
gi|4 : ataaaacTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA--GGAACACTTTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTACAATTTTCAA--GAAAAAATG-TGCC-CAT-ATCTTTTGATGA-TG-TTGTCAAAT--ACTTATATAAT---TATAACTTTAGAAGAAAA-AAATTAC-AGA-TCA--TA-T-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAT-TGGTC--TTTCAAT-TATTTATGTGAT----TAT-T-ATT-----CTTAGTTATTATTGATTATTATTTTTTGC-TCAATTTTTAATAATC--C--A----ATGTTAA---TGT----ATT-TGTT-TAGC-AT-TTTCT-TCATACC-------GTATG------G---------ATG-GAGGTTAAAAAGGTTGTAAACTGTATCTTGTGCTGT----AAA-TTATG----------TAGAA-A-A---AAAAA-----A-caaaa
gi|5 : TTTTTGAAAAATCTGG-CAAAAGAAAGGTATT-TAATGTACAAACTGCTATTTTTGGTTTTT-CAGAAAA--GGAACACATTGTTTTAAATTTCATAA-TCCTCGATCT-TAGTAAAGAGGTATA-----TTCCAACTTTCAA--GAAAAAATG-TGCT-TAT-TACTTTTGATGA-TG-TTGTCAAAT--ATTTATATAATTACTACACC-TTAGAAG-AAA-AATTTAC-AGA-TCAAGTATT-TTACAAAAA--GAAATG---------------AA-T-GTATTTT--AATCCAA-----TGAG----CATGC-ATT-----TTC------------------TTTt
gi|5 : TAATC--C--A----ATGAGCA---TGC----ATTTTCTT-TACCCAG-T-------AT-G--------A---G------A---------GTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAA-ATA---ATAAA-----A-AAGAAAacccagtatgagagtgtgagtaaaaggtgtaaatgtatttgtgctgtaaattatgtaaaaaataataaaaaagaaataaaaaaaa
gi|6 : tttttgaaaaatctggcaaaagaaaggtatttaatgtacaaactgctatttttggtttttcagaaaaggaacacattgttttaaatttcataatcctcgatcttagtaaagaggtatattccaactttcaagaaaaaatgtgcttattacttttgatgatgttgtcaaatatttatataattactacaccttagaagaaaaatttacagatcaagtattttacaaaaagaaatgaatgtatttATGCGATGCAATTTTGCAAAACCGATATCAGCCTGAAT-CATTAA-GTTGCTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGAT-TCAAAATCAAATCACAGACCTACATGTGAGAAAACAACAT-GACTAATGATTGTAACTTTGCATC-AAATTTTAATTGGAAACAT-AT---CATACAA--ACATT-----AAATCGGTT----------AAAAGATCGGGTC-GGACTCGATATGGATTAAATTATAGAATTATATCAT-GAA-T-----ATTAGA-AATACAGACCAAA-T-CTTGACATATGT-C-AAAAT-AAAATAAGAAAATTCCCTC-TCTCTCtaaaaaaaa
gi|7 : TGT--GAATCCAA-GTGGAATAAAGAAC-TGAAGTTGAACGGTGATTTTGACTGGAAACAG-ATTCATA-AAAA--ATATTTTTCAATACTTATATAGTAGTAACAAAAGAT----ACAAATCT-GATATGG-TTCAATTTTAGAATTAT-TCACAGAA-TTCTGCATGGGC-ACAA-AC---AAG-TACTT-GTTTATGTCC-AAAAT-CGGA----AATGATAATTT-ATGTTCATTTTG-----TCAAA--TGGAAGCA-G-------A-AACTTTC-----T-TTTATTGTTCA
gi|8 : CTAAA-TG-GAAA-T-GTC-TTTTCAATGTAT-----TGAT----TAT-TAATTATTAGTTTACA---------------TTTTT--CGTCA--TATTAATAATT--CCGA----AT-TGCAAGGTGTTTAAATTGTCTT-TAG--ACATTTCT-TCA--CCATATG--A---G------A---------GTGTGAG--TAAA---G-TGTAAA-TGTA--TTGTGCTGCTGAAAAA-TTATG---------TAAAAA-A-A---AAAAA-----ATAAAAAAaa
gi|9 : ATTGTTTTACATTTCATAGGTCCTC----T-TAGTA--GAGATATAAAATATTCCAACTTTCGAAGGAAAAAATGATGCC-CTT-TACTATTGATGA-TGGTTGTCAAAT--ATCTATATAATTTCTACACCTCAGAAAG-AAATAATTTAC-AGATCCAAGTATTCTTATAAAAAACAAAAT-G--TCTAAA-TGCGACA-T-G-CTTTTCTA-----------TGAT----TAT-T-ATaaaataaaaaaagtttct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTGTAAACAAACTTATGCTCAGCATGGTAATTACTGTTTCTTCACAGGAA
Alignments
lowQualScore : 1 1 1 1 1 1 11 1 1 111 11 22222 333333333 22222 2222222 11 333333 111 1 1 1 3333333333 1 22 1 11111 1 11111 1 1 11111 1 22 1111 11111 1 11 11 1 111111 11111 444444444444444444 11111 1111111 111 222222 1111 5555555555555555555555555555 11 2222222222 1111111
lowQualScore : 3 3 3 7 7 3 3 3 6 1 1 88 3 6 0 5 8 111 11 11 00000 1 1 0 222222222 33333 0 1 8 8 8 3 6666666 00 222222 111 0 0 0 6666666666 1 0 00 22 3 5 11111 3 66666 6 6 0 0 88888 7 3 6 0 8 0 8 55 8 88 6 1 4444 6 1 44444 99 1 6 6 6 1 6 3 55 3 44 6 7 77 6 6 44 7 6 99 77 55 4 4 4 2 9 8 333333 9999 999 22222 555555555555555555 66666 77 66 7777777 000 111111 4 5 0000 4 4 4444444444444444444444444444 66 0 55 4 66 9999 8 2222222222 4 4 777 6666666
lowQualScore : . . . . . . . . . . . .. . . . . . ... .. .. ..... . . . ......... ..... . . . . . . ....... .. ...... ... . . . .......... . . .. .. . . ..... . ..... . . . . ..... . . . . . . . .. . .. . . .... . . ..... .. . . . . . . . .. . .. . . .. . . .. . . .. .. .. . . . . . . ...... .... ... ..... .................. ..... .. .. ....... ... ...... . . .... . . ............................ .. . .. . .. .... . .......... . . ... .......
lowQualScore : 3 3 3 3 3 3 3 3 7 0 0 33 3 7 0 0 0 888 66 00 00000 0 4 8 444444444 00000 8 0 0 0 0 2 0000000 22 222222 000 0 0 0 0000000000 2 0 00 22 2 5 00000 3 77777 7 7 0 0 55555 3 3 7 8 0 8 0 22 0 44 7 0 2222 7 7 00000 22 7 7 7 7 7 7 3 88 5 33 7 3 77 7 7 33 3 7 22 99 11 4 4 4 8 0 9 444444 4444 999 55555 666666666666666666 66666 99 99 0000000 000 666666 3 7 1111 4 4 9999999999999999999999999999 11 8 77 4 22 4444 9 3333333333 4 4 888 6666666
consensus : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGT--GAAAACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTTA-------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
Reference ( family-5463 ) : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGT--GAAAACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTTA-------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|1 : TATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATATAAATTAAGGTTCTAGAAATATTTATTGACTACTTGATGTCAAAATCAAATCACCGATCTACTTGT--GAAAACAA-ATGGGCTTATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATAGAA--ACATT-----ACACCTGTTTA-------CAAAAGAC----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-CCATAGAA-T-----ATTAGGAACTA-A----AAATT-CCT-ACATATGT-CAAAAATAAAAA----AAAAATCTCTCTTTGCTCAATATGC-CACTTTAATCTAGAAACACATCAAAGCA-ACCTTTT-----T-TTTATTGCCCATACTGTATCTTAG-T---CTGTGG-ACAA-TTGTTAGATT-GATTTTTGAAGAATC-GG-CAAAAGAATTGTATTAAAATGTACAAACTG-AATTTTAGCTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-T-CTC----TATAGTAAAGAGATA-A---TATTCCAACTTTCAA--GGAAAAGGT-TGCCGCATGTACTTTTGATGATTGTTTGTCAAATA-ACTTATAT-ATTA-TACACCTTTAGAAG-AAA-AATTTAC-AGA-ACAAG-ATT-TTATAAACA--GAAATGGTCTCTAAATTG-GAAAGT-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTC--T-TCA--TTATAATAATC--C-------ATGTGCA---TGCTA--ATTGTCTT-TAGT--C-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAATTTTTG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|10 : a--TCTAAA-----AAA-T-ATCTTTT-CAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTT---C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT---------CTA-TAGC-AT-TTTCT-TTAT-CC-------A---GTATG--A---------GAGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAATA-A---AAAAATACATA-AAAAAA
gi|11 : atacaagaatcagatC-AT-TTTCTGTCAT-CCC------A---G------ATATGCGTACGTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAAGTTATG---------GTAAAA-A-A---AAAAA-----ATAAAAAAaaag
gi|12 : gcTATGCGATGCAATTTT-CAAA-CC-ATGTCAGCCTGAATTCATTAAAGTT-CTTTGCAAATACAAAA-AAGGTTCTATAAATATTTAT-GACTACCTGATGTCAAAATCAattctctgccaaaaaaaaa
gi|13 : AACTTGCACCTAAATTTTAATTGGAAACATCGT--ATATACAA--ACATT-----AAATCTG-TTA-------CAACAGAT----TCAGGATT-GATATGG-TTCAATTATAGAATTAT-TCAT
gi|14 : G-GAAA-T-GTCTTTT-CAAT-TAA-----TGGT----CAT---ATT-----TTT------------------TTTTT--C-TTA--TTATAATAATC--C--
gi|15 : gtaaacaaacttatgctcagcaatggtcatactatttcttcacaTTT-TTAT-CC-------A---GTATGAGA---------GTGTGAG--TAAAAG---TGTAAA-TGTAT-TTGTGTTGT----AAA-TTATG----------TAAAC-A-ATATAAATA-----T-AAAAAA
gi|17 : aatatttttaaC-AAGCA-AT--TTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTtaaa
gi|18 : TTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----TGTGTATTG
gi|2 : ATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--AT-TACAATAACATT-----ATAATTGTT-A-------CAAAAGAT-----CAGGCAT-GATATGG-TTCAATTATAGAATTAT-TCATAAAAAT-----ATTAGG-ACTA-A----CAA-T-CCT-ACATATGT-C-AAAA----------AAAAATCTTTC-TTGCTCAATATGCGCACTTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----T-T-TATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAAATTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTTTCAGAAAAGAGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAG-GATATA---T-TTTCAATTTTCAA--GAAAAA-TG-TGCC-CAT-TACTTTTG-TGA-TG-TTGTCAAAT--ACTTAT-TAAATACTACAAC-TTAGAA--AAA-AATTTACAAGATATAAGTA-T-TTATAAAAA--AGAATGG--TCTAAA-TG-G-AA-T-GTC-TTTTCAAT-TAT-----TGATTATATAT-T-ATT-----ATT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTACA---TGT----ATTGTCTT-TAGC-AT-TTTCT-TCAT-CCAGTACTGA---G------A---------GTGTGAG--TAA---GG-TGTAAA--------------------------------------TTAAAA-A-A---AAAAA-----A-AAA
gi|3 : a-ATCTTTTATATCT-TGTATTGTCCGT-CTGATTC-TAGATAGACTGTGAAGAAA-TTAGCAGATTGGAGTTTTGAAAAATCTGGTCAACAC--TTGAATT-TGATGTACAAACTGTTATTCATGCTTTTC-TAGAAAA--GGAACACATGATTTTAAACTTTAAAA-TTGTC----T-TCATAAAGAGATACA---TATTCCAATACTCAA--GAAAAAAAG-TCAA-TAT-TGCTTTTGGTG--TT-TTG--AAATCGGTTTATTTAATTGCTACA-TTTTAGAAA-TAA-AATCTAC-AAA-ACAAGTATT-TCACAAAAT--GAAATGG--TCTAAG-TG-CAAA-T-GTC-TTTTCAAA-TAA-----TGAT----AAC-A-ATT-----TTC------------------TTTT----------TTACAATAAGCAGT--AGAACATATACA---TGT----G-TGTTTTGTATC-GC-CTTCT-TT-T-TA-------A---A------A---------GAGTGCG---AAAGAGA-TGTATA-TGTAG-TTGTGTTGG----AAA-TAATGAAAACATCATTAAAA-A-C---AAAAA-----C-AAAAg
gi|4 : ataaaacTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA--GGAACACTTTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTACAATTTTCAA--GAAAAAATG-TGCC-CAT-ATCTTTTGATGA-TG-TTGTCAAAT--ACTTATATAAT---TATAACTTTAGAAGAAAA-AAATTAC-AGA-TCA--TA-T-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAT-TGGTC--TTTCAAT-TATTTATGTGAT----TAT-T-ATT-----CTTAGTTATTATTGATTATTATTTTTTGC-TCAATTTTTAATAATC--C--A----ATGTTAA---TGT----ATT-TGTT-TAGC-AT-TTTCT-TCATACC-------GTATG------G---------ATG-GAGGTTAAAAAGGTTGTAAACTGTATCTTGTGCTGT----AAA-TTATG----------TAGAA-A-A---AAAAA-----A-caaaa
gi|5 : TTTTTGAAAAATCTGG-CAAAAGAAAGGTATT-TAATGTACAAACTGCTATTTTTGGTTTTT-CAGAAAA--GGAACACATTGTTTTAAATTTCATAA-TCCTCGATCT-TAGTAAAGAGGTATA-----TTCCAACTTTCAA--GAAAAAATG-TGCT-TAT-TACTTTTGATGA-TG-TTGTCAAAT--ATTTATATAATTACTACACC-TTAGAAG-AAA-AATTTAC-AGA-TCAAGTATT-TTACAAAAA--GAAATG---------------AA-T-GTATTTT--AATCCAA-----TGAG----CATGC-ATT-----TTC------------------TTTt
gi|5 : TAATC--C--A----ATGAGCA---TGC----ATTTTCTT-TACCCAG-T-------AT-G--------A---G------A---------GTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAA-ATA---ATAAA-----A-AAGAAAacccagtatgagagtgtgagtaaaaggtgtaaatgtatttgtgctgtaaattatgtaaaaaataataaaaaagaaataaaaaaaa
gi|6 : tttttgaaaaatctggcaaaagaaaggtatttaatgtacaaactgctatttttggtttttcagaaaaggaacacattgttttaaatttcataatcctcgatcttagtaaagaggtatattccaactttcaagaaaaaatgtgcttattacttttgatgatgttgtcaaatatttatataattactacaccttagaagaaaaatttacagatcaagtattttacaaaaagaaatgaatgtatttATGCGATGCAATTTTGCAAAACCGATATCAGCCTGAAT-CATTAA-GTTGCTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGAT-TCAAAATCAAATCACAGACCTACATGTGAGAAAACAACAT-GACTAATGATTGTAACTTTGCATC-AAATTTTAATTGGAAACAT-AT---CATACAA--ACATT-----AAATCGGTT----------AAAAGATCGGGTC-GGACTCGATATGGATTAAATTATAGAATTATATCAT-GAA-T-----ATTAGA-AATACAGACCAAA-T-CTTGACATATGT-C-AAAAT-AAAATAAGAAAATTCCCTC-TCTCTCtaaaaaaaa
gi|7 : TGT--GAATCCAA-GTGGAATAAAGAAC-TGAAGTTGAACGGTGATTTTGACTGGAAACAG-ATTCATA-AAAA--ATATTTTTCAATACTTATATAGTAGTAACAAAAGAT----ACAAATCT-GATATGG-TTCAATTTTAGAATTAT-TCACAGAA-TTCTGCATGGGC-ACAA-AC---AAG-TACTT-GTTTATGTCC-AAAAT-CGGA----AATGATAATTT-ATGTTCATTTTG-----TCAAA--TGGAAGCA-G-------A-AACTTTC-----T-TTTATTGTTCA
gi|8 : CTAAA-TG-GAAA-T-GTC-TTTTCAATGTAT-----TGAT----TAT-TAATTATTAGTTTACA---------------TTTTT--CGTCA--TATTAATAATT--CCGA----AT-TGCAAGGTGTTTAAATTGTCTT-TAG--ACATTTCT-TCA--CCATATG--A---G------A---------GTGTGAG--TAAA---G-TGTAAA-TGTA--TTGTGCTGCTGAAAAA-TTATG---------TAAAAA-A-A---AAAAA-----ATAAAAAAaa
gi|9 : ATTGTTTTACATTTCATAGGTCCTC----T-TAGTA--GAGATATAAAATATTCCAACTTTCGAAGGAAAAAATGATGCC-CTT-TACTATTGATGA-TGGTTGTCAAAT--ATCTATATAATTTCTACACCTCAGAAAG-AAATAATTTAC-AGATCCAAGTATTCTTATAAAAAACAAAAT-G--TCTAAA-TGCGACA-T-G-CTTTTCTA-----------TGAT----TAT-T-ATaaaataaaaaaagtttct
blockSeqs : G A G T A G . . G A A GA C G G T C TCA AT TA TTTCA A T TAGTAGTAA CGGGT A C A A A TTCTGC G CAGACC TA G C . TAAAATAAG T . CG TG T T ATC T ATATC G G . . ATAGA A A G T . TA T GA G C GATC . T AAATA AG A A . . G . G CG T AC A T GA T A TA T C AC . T C . G T T C TTTATG TATA GC ATTAG AGTTATTATTGATTATTA TTGC AT AG AGAAC AGG TTAAAT G G CAG G A CAGATATGCGTAC GT GT C TC TGAA G AAAACATCAT T T TAT TACATA
blockSeqs : . . . . . . . . . . . . . G . A AT . . T A TA T C . . . A AT A AC T . . . TCGGA C . . TG T . ATC T . . G . . T A . G . . TT . . . T . . C TA . A . . . A . . . A GC A T A . . TC T . . . T . . . T T G T . TA . ACA TCG . . CGA . AT G . ACA . . AGTACTGAGA . G . T . . T . . . AT
blockSeqs : . G . A T . . A T A A A . . . . T C A T . . . . A . CA . . G . . . G . . T . . TA . . . C . . T TA . A . . . A . . . A AC C T G . . A T . . . T . . . T T . A . T . . TC . . A . AT T . AT . . AGTATGAGA . A . T . . G . . . AT
blockSeqs : . . . A . . T C . . T . . . . . . T . . CT . . . C . . T T . A . . . A . . . A TC C . G . . T . . . . T . . . T T . T . T . . TC . . A . AT G . AT . . ATATGAGA . G . T . . T . . . T
blockSeqs : . . . . . C . . T . . . . . . . . . . . . . . . . . T . . . . T . . . . C . A . A . . C . . A . G . . AT . . AGTATGA . . . G . . T . . . A
blockSeqs : . . . . . . . . A . T . . . . . A . . . . GC . . GTATGG . . . T . . T . . . C
blockSeqs : . . . . . . . T . T . . . AT . . AAA . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . AGA . . . . . . . . . . A
blockSeqCons : A******** TN ** ** AC ** T* A****** AT**** AT** G*
originalCons : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGT--GAAAACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTTA-------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAGAAAA-AGGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAGC-AC-TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
finalCons : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGT--GAAAACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCTGTTA--------CAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTNATTTTTGGTTTTT-CAGAAAA--GGAACACATTGTTTTAAATTTCATAA-TCCTC----T-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTAC-AGA-NCAAGTATT-TTATAAAAA--GAAATGG--TCTAAAT-G-GAAA-T-GTCTTTTTCAAT-TAT-----TGAT----TAT-T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--CA------ATGTGCA---TGTAT----TGTCTT-TAGCAT--TTTCT-TCAT-CC-------A---G------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTGTAAACAAACTTATGCTCAGCATGGTAATTACTGTTTCTTCACAGGAA
Alignments
lowQualScore : 1 1 1 1 1 1 11 1 1 111 11 22222 22222222 22222 2222222 11 333333 111 1 1 1 3333333333 1 22 1 11111 1 11111 1 1 11111 1 11 1111 111 1 11 111 1 111111 111111 11111 444444444444444444 11111 1111111 111 333333333 666666666666666666666666666 11 2222222222 1111111
lowQualScore : 3 3 3 7 7 3 3 3 6 1 1 88 3 6 0 5 8 111 11 11 00000 1 1 99999999 8 0 33333 0 1 8 8 8 3 6666666 00 222222 111 0 0 0 6666666666 1 0 00 22 3 5 11111 3 66666 6 6 0 0 88888 7 3 6 0 8 0 8 44 8 8 11 6 1 4444 6 1 111 99 1 6 6 6 1 6 3 55 3 44 6 3 77 6 6 444 6 1 99 77 55 4 4 4 7 4 8 333333 999999 22222 555555555555555555 66666 77 66 7777777 000 000000000 0 5 66 4 4 777777777777777777777777777 66 0 55 4 66 9999 8 5555555555 4 4 777 6666666
lowQualScore : . . . . . . . . . . . .. . . . . . ... .. .. ..... . . ........ . . ..... . . . . . . ....... .. ...... ... . . . .......... . . .. .. . . ..... . ..... . . . . ..... . . . . . . . .. . . .. . . .... . . ... .. . . . . . . . .. . .. . . .. . . ... . . .. .. .. . . . . . . ...... ...... ..... .................. ..... .. .. ....... ... ......... . . .. . . ........................... .. . .. . .. .... . .......... . . ... .......
lowQualScore : 3 3 3 3 3 3 3 3 7 0 0 33 3 7 0 0 0 888 66 00 00000 0 4 00000000 0 8 00000 8 0 0 0 0 2 0000000 22 222222 000 0 0 0 0000000000 2 0 00 22 2 5 00000 3 77777 7 7 0 0 55555 3 3 7 8 0 8 0 88 0 0 00 7 0 2222 7 7 777 22 7 7 7 7 7 7 3 88 5 33 7 5 77 7 7 333 7 7 22 99 11 4 4 4 3 4 9 444444 333333 55555 666666666666666666 66666 99 99 0000000 000 111111111 2 0 99 4 4 777777777777777777777777777 11 8 77 4 22 4444 9 0000000000 4 4 888 6666666
consensus : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGT--GAAAACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCT--------G-TTACAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAG-AAAAG--GAACACATTGTTTTAAATTTCATAA-TCC----TCT-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTACA-GA-N-CAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGATTAT----T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAG-CATTTTCT-TCAT-CC-----A---GTA-----A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
Reference ( family-5463 ) : NTATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGATGTCAAAATCAAATCACNGACCTACNTGT--GAAAACAA-ATGGACTAATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATACAA--ACATT-----ANACCT--------G-TTACAAAAGAT----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-TCATAGAA-T-----ATTAGG-ACTA-A----AAA-T-CCT-ACATATGT-C-AAAAT-AAAA----AAAAATCTCTC-TTGCTCAATATGC-CACTCGAATCTAGAAACA-ATC-AAGCA-ATCTTTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAA-TTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTNATTTTTGGTTTTT-CAG-AAAAG--GAACACATTGTTTTAAATTTCATAA-TCC----TCT-TAGTAAAGAGATATA---TATTCCAACTTTCAA--GAAAAAATG-TGCC-CAT-TACTTTTGATGA-TG-TTGTCAAAT--ACTTATATAATTACTACACCTTTAGAAG-AAA-AATTTACA-GA-N-CAAGTATT-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAA-T-GTCTTTTTCAAT-TAT-----TGATTAT----T-ATT-----TTT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT----ATTGTCTT-TAG-CATTTTCT-TCAT-CC-----A---G-------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|1 : TATGCGATGCAATTTT-CAAA-CC-ATATCAGCCTGAATTCATTAAAGTT-CTTTGTAAATATAAATTAAGGTTCTAGAAATATTTATTGACTACTTGATGTCAAAATCAAATCACCGATCTACTTGT--GAAAACAA-ATGGGCTTATGATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--ATATAGAA--ACATT-----ACACCT--------GTTTACAAAAGAC----TCAGGACT-GATATGG-TTCAATTATAGAATTAT-CCATAGAA-T-----ATTAGGAACTA-A----AAATT-CCT-ACATATGT-CAAAAATAAAAA----AAAAATCTCTCTTTGCTCAATATGC-CACTTTAATCTAGAAACACATCAAAGCA-ACCTTTT-----T-TTTATTGCCCATACTGTATCTTAG-T---CTGTGG-ACAA-TTGTTAGATT-GATTTTTGAAGAATC-GG-CAAAAGAATTGTATTAAAATGTACAAACTG-AATTTTAGCTTTTT-CAGAAAAAG--GAACACATTGTTTTAAATTTCATAA-T-C----TCTATAGTAAAGAGATA-A---TATTCCAACTTTCAA--GGAAAAGGT-TGCCGCATGTACTTTTGATGATTGTTTGTCAAATA-ACTTATAT-ATTA-TACACCTTTAGAAG-AAA-AATTTACA-GA-A-CAAG-ATT-TTATAAACA--GAAATGGTCTCTAAATTG-GAAAGT-GTCTTTTTCAAT-TAT-----TGATTAT----T-ATT-----TTT------------------TTTTC--T-TCA--TTATAATAATC--C-------ATGTGCA---TGCTA--ATTGTCTT-TAG-T-CTTTCT-TCAT-CC-----A---G-------A---------GTGTGAG--TAAAAGGG-TGTAAA-TGTAT-TTGTGCTGT----AAATTTTTG---------TTAAAA-A-A---AAAAA-----A-AAAAAA
gi|10 : a--TCTAAA-----AAA-T-ATCTTTT-CAAT-TAT-----TGATTAT----T-ATT-----TTT------------------TTTT---C-TCA--TTATAATAATC--C--A----ATGTGCA---TGT---------CTA-TAG-CATTTTCT-TTAT-CC-----A---GTATG---A---------GAGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAATA-A---AAAAATACATA-AAAAAA
gi|11 : atacaagaatcagat-CATTTTCTGTCAT-CCC----A---G-------ATATGCGTACGTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAAGTTATG---------GTAAAA-A-A---AAAAA-----ATAAAAAAaaag
gi|12 : gcTATGCGATGCAATTTT-CAAA-CC-ATGTCAGCCTGAATTCATTAAAGTT-CTTTGCAAATACAAAA-AAGGTTCTATAAATATTTAT-GACTACCTGATGTCAAAATCAattctctgccaaaaaaaaa
gi|13 : AACTTGCACCTAAATTTTAATTGGAAACATCGT--ATATACAA--ACATT-----AAATCT--------G-TTACAACAGAT----TCAGGATT-GATATGG-TTCAATTATAGAATTAT-TCAT
gi|14 : G-GAAA-T-GTCTTTT-CAAT-TAA-----TGGTCAT------ATT-----TTT------------------TTTTT--C-TTA--TTATAATAATC--C--
gi|15 : gtaaacaaacttatgctcagcaatggtcatactatttcttcacaTATTTT-TA---ATTTTT----AT-CC-----A---GTATGAG-A---------GTGTGAG--TAAAAG---TGTAAA-TGTAT-TTGTGTTGT----AAA-TTATG----------TAAAC-A-ATATAAATA-----T-AAAAAA
gi|17 : aaC-AAGCA-AT--TTT-----T-TGTATTGCCCAT-CTGTATC-TAG-T---CTGTtaaa
gi|18 : TTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----TGTGTATTG
gi|2 : ATT-TAAACTTGCATCGAAATTTTAATTGGAAACAT-GT--AT-TACAATAACATT-----ATAATT--------G-TTACAAAAGAT-----CAGGCAT-GATATGG-TTCAATTATAGAATTAT-TCATAAAAAT-----ATTAGG-ACTA-A----CAA-T-CCT-ACATATGT-C-AAAA----------AAAAATCTTTC-TTGCTCAATATGCGCACTTGAATC-AGAAACA-ATC-AAGCATATCTTTT-----T-T-TATTGCCCAT-CTGTATC-TAG-T---CTGTGGAACAAATTGTCAGATTGGATTTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTTTCAG-AAAAGAGGAACACATTGTTTTAAATTTCATAA-TCC----TCT-TAGTAAAG-GATATA---T-TTTCAATTTTCAA--GAAAAA-TG-TGCC-CAT-TACTTTTG-TGA-TG-TTGTCAAAT--ACTTAT-TAAATACTACAACTT-AGAA--AAA-AATTTACAAGA-TATAAGTATT-T-ATAAAAA--AGAATGG--TCTAAA-TG-GAA--T-GTCTTTT-CAAT-TAT-----TGATTATATATT-ATT-----ATT------------------TTTTT--C-TCA--TTATAATAATC--C--A----ATGTACA---TGT----ATTGTCTT-TAG-CATTTTCT-TCAT-CC-----A---GTACTGAGA---------GTGTGAG--TAA---GG-TGTAAA-T-------------------------------------TAAAA-A-A---AAAAA-----A-AAA
gi|3 : a-ATCTTTTATATCT-TGTATTGTCCGT-CTGATTC-TAGATAGACTGTGAAGAAA-TTAGCAGATTGGAGTTTTGAAAAATCTGGTCAACAC--TTGAATT-TGATGTACAAACTGTTATTCATGCTTTTC-TAG-AAAAG--GAACACATGATTTTAAACTTTAAAA-TTG----TCT-TCATAAAGAGATACA---TATTCCAATACTCAA--GAAAAAAAG-TCAA-TAT-TGCTTTTGGTG--TT-TTG--AAATCGGTTTATTTAATTGCTACA-TTTTAGAAA-TAA-AATCTACA-AA-A-CAAGTATT-TCACAAAAT--GAAATGG--TCTAAG-TG-CAAA-T-GTC-TTTTCAAA-TAA-----TGATAAC----A-ATT-----TTC------------------TTTT----------TTACAATAAGCAGT--AGAACATATACA---TGT----G-TGTTTTGTAT-CGCCTTCT-TT-T-TA-----A---A-------A---------GAGTGCG---AAAGAGA-TGTATA-TGTAG-TTGTGTTGG----AAA-TAATGAAAACATCATTAAAA-A-C---AAAAA-----C-AAAAg
gi|4 : ataaaacTTTGAAAAATCTGG-CAAAAGAATTGTATT-TAATGTACAAACTGTAATTTTTGGTTTTT-CAG-AAAAG--GAACACTTTGTTTTAAATTTCATAA-TCC----TCT-TAGTAAAGAGATATA---TATTACAATTTTCAA--GAAAAAATG-TGCC-CAT-ATCTTTTGATGA-TG-TTGTCAAAT--ACTTATATAAT---TATAACTTTAGAAGAAAA-AAATTACA-GA-T-CA--TA-T-TTATAAAAA--GAAATGG--TCTAAA-TG-GAAT-TGGTC--TTTCAAT-TATTTATGTGATTAT----T-ATT-----CTTAGTTATTATTGATTATTATTTTTTGC-TCAATTTTTAATAATC--C--A----ATGTTAA---TGT----ATT-TGTT-TAG-CATTTTCT-TCATACC-----GTATG-------G---------ATG-GAGGTTAAAAAGGTTGTAAACTGTATCTTGTGCTGT----AAA-TTATG----------TAGAA-A-A---AAAAA-----A-caaaa
gi|5 : TTTTTGAAAAATCTGG-CAAAAGAAAGGTATT-TAATGTACAAACTGCTATTTTTGGTTTTT-CAG-AAAAG--GAACACATTGTTTTAAATTTCATAA-TCCTCGATCT-TAGTAAAGAG--GTA---TATTCCAACTTTCAA--GAAAAAATG-TGCT-TAT-TACTTTTGATGA-TG-TTGTCAAAT--ATTTATATAATTACTACACC-TTAGAAG-AAA-AATTTACA-GA-T-CAAGTATT-TTACAAAAA--GAAATG---------------AA-T-GTATTTT--AATCCAA-----TGAGCATG---C-ATT-----TTC------------------TTTt
gi|5 : TAATC--C--A----ATGAGCA---TG------------------CATTTTCT-TTAC-CC-----A---GTATGAG-A---------GTGTGAG--TAAAAGG--TGTAAA-TGTAT-TTGTGCTGT----AAA-TTATG---------TAAAAA-ATA---ATAAA-----A-AAGAAAacccagtatgagagtgtgagtaaaaggtgtaaatgtatttgtgctgtaaattatgtaaaaaataataaaaaagaaataaaaaaaa
gi|6 : tttttgaaaaatctggcaaaagaaaggtatttaatgtacaaactgctatttttggtttttcagaaaaggaacacattgttttaaatttcataatcctcgatcttagtaaagaggtatattccaactttcaagaaaaaatgtgcttattacttttgatgatgttgtcaaatatttatataattactacaccttagaagaaaaatttacagatcaagtattttacaaaaagaaatgaatgtatttATGCGATGCAATTTTGCAAAACCGATATCAGCCTGAAT-CATTAA-GTTGCTTTGTAAATACAAAA-AAGGTTCTAGAAATATTTAT-GACTACCTGAT-TCAAAATCAAATCACAGACCTACATGTGAGAAAACAACAT-GACTAATGATTGTAACTTTGCATC-AAATTTTAATTGGAAACAT-AT---CATACAA--ACATT-----AAATCG--------G-TT--AAAAGATCGGGTC-GGACTCGATATGGATTAAATTATAGAATTATATCAT-GAA-T-----ATTAGA-AATACAGACCAAA-T-CTTGACATATGT-C-AAAAT-AAAATAAGAAAATTCCCTC-TCTCTCtaaaaaaaa
gi|7 : TGT--GAATCCAA-GTGGAATAAAGAAC-TGAAGTTGAACGGTGATTTTGACTGGAAACAG-ATTCATA-AAAA--ATATTTTTCAATACTTATATAGTAG-TAACAAAAGAT----ACAAATCT-GATATGG-TTCAATTTTAGAATTAT-TCACAGAA-TTCTGCATGGGC-ACAA-AC---AAG-TACTT-GTTTATGTCC-AAAAT-CGGA----AATGATAATTT-ATGTTCATTTTG-----TCAAA--TGGAAGCA-G-------A-AACTTTC-----T-TTTATTGTTCA
gi|8 : CTAAA-TG-GAAA-T-GTC-TTTTCAATGTAT-----TGATTAT----TAATTATTAGTTTACA---------------TTTTT--CGTCA--TATTAATAATT--CCGA----AT-TGCAAGGTGTTTAAATTGTCTT-TAGACA-TTTCT-TCA--CCATATGA---G-------A---------GTGTGAG--TAAA---G-TGTAAA-TGTA--TTGTGCTGCTGAAAAA-TTATG---------TAAAAA-A-A---AAAAA-----ATAAAAAAaa
gi|9 : ATTGTTTTACATTTCATAGGTCC----TCT-TAGTA--GAGATATAAAATATTCCAACTTTCGAAGGAAAAAATGATGCC-CTT-TACTATTGATGA-TGGTTGTCAAAT--ATCTATATAATTTCTACACCTCAGAAAG-AAATAATTTACA-GATC-CAAGTATTCTTATAAAAAACAAAAT-G--TCTAAA-TGCGACA-T-G-CTTTTCTA-----------TGATTAT----T-ATaaaataaaaaaagtttct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ACTGTAAACAAACTTATGCTCAGCATGGTAATTACTGTTTCTTCACAGGAA