lowQualScore : 33333333333333333333333333333333333333333333333333333333333 111111111 1 33333 1 2
lowQualScore : 77777 2 4 2 888888888 22 333 333 1 1 44 22 1 333 22 1 99 555555 11111111111111111111111111111111111111111111111111111111111 1 555 1 44 1 1 333 333 333 2 000000000 2 2 2 2 33 3 55 2 00000 2 2 0 7 7 3
lowQualScore : ..... . . . ......... .. ... ... . . .. .. . ... .. . .. ...... ........................................................... . ... . .. . . ... ... ... . ......... . . . . .. . .. . ..... . . . . . .
lowQualScore : 99999 1 2 0 000000000 22 555 111 7 7 11 44 7 000 44 7 11 555555 88888888888888888888888888888888888888888888888888888888888 7 444 7 11 7 7 000 111 555 0 000000000 0 2 2 2 22 6 00 0 00000 8 5 0 3 0 7
consensus : TTATTG----NAT-AT-TT-AT---------T-TCG---GT--GTATC-T-TGATTT--ATTTG--G-A---C--GAA-GGGCGGT-G------AC-N-----AGT--G----------CG----GAGCAC-GAGTCT--C-C----G-C-C---TT-CG---T-CCAAAT--AAATCA-A-GA---TAC--AC---CGA-A---------AT-AA-A-T-AT--TC-A--A-AAC----TTACTTGTATCAA-GGCCAATAGAAACTTGCTTGTA-TCATGA
Reference ( gi|2 ) : TTATTG----TAT-AT-TT-AT---------T-TCG---GT--GTATC-T-TGATTT--ATTTG--G-A---C--GAA-GGGCGGT-G------AC-G-----AGT--G----------CG----GAGCAC-GAGTCT--C-C----G-C-C---TT-CG---T-CCAAAT--AAATCA-A-GA---TAC--AC---CGA-A---------AT-AA-A-T-AT--TC-A--A-AA-----TTATTTGTATCAA-GGCCAATAGAAACTTGCTTTTATTCATGAAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
gi|16 : TTATTA----AAT-AT-AT-AT---------T-TCG---GT--GTATC-T-TGATTT--ATTTG--G-A---C--GAA-GGGCGGA-G------AC-T-----CGT--G----------TT----ACGCAC-CCGTCA--T-C----G-C-CA--TT-CG---T-CCAAAT--AAATCA-A-GA---TAC--AC---CGA-A---------AT-AA-A-T-AT--
gi|9 : TTATTG----AAT-AT-TT-AT---------T-TCG---AT--GTATC-T-TGATTT--ATT--------------------------------AC-C-----A------------------------CAC-TCGTCA--C-C----G-C-CC--TT-CG---T-CCAAAT--AAATTA-A-GA---TAC--AC---CGC-A---------CT-AA-A-T-AT--AC-A--A-ct
gi|1 : aTTATTG----TATTAT-TT-AT---------T-ATG---G---GCATT-TGTGATTTT-ATTTG--G-A---C--GGA-AGTCGAT-G------AC-G-----AGT--G----------CG----GAGCAC--AGTCT--C-C----G-CAC---TT-CG---T--CAAAT--AAATCA-A-GA---T-T--GCTTATGG-A---------ATAAA-A-T-AT--TC-A--ATAAC----TTACTTGTATCAAGGGCTAATAGAA--CTGCTTGTA-TCATGActtacttgcatcaaggccaatagaaacttgcttttgtcatgccagaa
gi|1 : gtaattatTTATTG----AAT-AT-TTTAT---------T-CCATAAGC--A-ATC-T-TGATTT--ATTT---G-A---C--GAA-GTGCGGA-G------AC-T------GT--G----------CT----CCGCAC-TCGTCA--T-C----G-A-C---TTCCG---T-CCAAATA-AAATCACA-AA---TGC---C---CAT-A---------AT-AA-A-TAAT--AC-AATA-AA-----TAATTcatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacccgagatgtaaccgatgctggaccaatcggattcaatttgccggggtcgtggacgagaatttattatttttgtcgtgaaagcaaatgcatgtggacaccctacagcatgttttgtcaaattatttacaaattacaaagttacgtgctgccatgtcttaaaaaaaattattccgtttttttttcattgtaattgaatgatccttatccttgtatataagatttgtaaacaatttcggtcatgacggccacgtatatgtatgttgtgtccgagaatt
gi|23 : gtTTATTG----TAT-A----------------------------ATATC-T-TGATTT--GTTTG--G-A---C--GAA-GGGCGGT-G------AC-G-----AGT--G----------CA----AAGCAC-GAGTCT--C-C----GCC-C---TT-CG---T-CCAATT--ATAT-A-A-GA---Tcttacttgtatcaagggctaatagaactgcttgtatcatgacatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacccgagatgtaaccgatgctggaccaatcggattcaatttgccggggtcgtggacgagaatttattatttttgtcgtgaaagcaaatgcatgtggacaccctacagcatgttttgtcaaattatttacaaattacaaagttacgtgctgccatgtcttaaaaaaaattattccgtttttttttcattgtaattgaatgatccttatccttgtatataagatttgtaaacaatttcggtcatgacggccacgtatatgtatgttgtgtccgagaatt
gi|20 : gcaatagTTATTG----AAT-AT-TT-AT---------T-TTG---GC--GTGTC-T-TGATTT--ATTTG--G-A---C--AAA-TGGCGGA-G------AC---------T--G----------C-----------------------------C-C---TT-CG---T-CCAAAT--AAATCA-A-GA---TAC--
gi|10 : TTGTGG----TAT-ATATT-CT---------C-CCG---GT--GCTTC-T-TTGTTT--ATTTGGAG-A---CGAGAA-GGGCGGT-G-------C-GATCGAAGTCGA----------CG----GAGCACTGAGTCTC-C-C----GCC-C---TT-CGGATC-CCAAAT--AAATAA-A-AA---C-----C---CGAGA---------AT--A-A-T-AT--TC-A--A-ttaacttacttgtatcaa
gi|10 : tTTATTG----AAT-AT-T--AT---------TCTCG---G-----GTT-T-TTATTT--ATTTG--G-GATCC--GAA-GGGCGGGAG------ACTC-----AGT--GCTC-------CGTC--GACTTC-GA-TCGCAC-C----G-C-CCTTCT-CGTC-T-CCAAAT--AAACAA-A-GA---AGC--AC---CGG-G---------A--GA-A-T-AT--taact
gi|24 : tttgtggtatTTATTG----TAT-AT-TT-AT---------T-TCG---GT--GC------------------------------------GCGA--G------AC-T-----CGT--G----------CT----GCGCAC-CGGTCA--C-C----GCC-C---TT-CG---CATCAAAT--AAATCA-AGGA---TAC--Act
gi|12 : TTATTGGAAATA--AT-TT-AT---------T-CCG---GTTTATATT-T-TAAT----ATGTG--G-A---C--GAA-GAACGCA-G------AC-T-----TGT--GTTTTCGCTTTCGTATAGAACAC------T--C-C------------TT-TG---T-CCAAAT--AAATCA-A-AG---AAC--A----TGA-T---------AT-AA-T-T-AT--Tctat
gi|13 : aagTATTG----CAT-AT-TT-AT---------T-TCG---GT--GTATC-T-TGATTT--ATTTG--G-A---C--AAA-GGGTGGT-G------AC-G-----AGT--G----------CG----AAGCAC-GAGTCT--C-T----GCC-C---TT-TG---T-CCAAAT--AAAGCA-A-GA---TAC--AT---AGG-A---------AT-A
gi|9 : acagtaagtactagcATTG----TAT-AT-TT-AG---------T-GCG---GT--GTATC-T-TAATTT--ATTTG--G-A---C--GAA-GGGCGGT-G------AC-G-----AGT--G----------TG----G-------------------------------------T----AAT--AAATCA-A-GA---TAC--AT---CGA-A---------AT-AA-A-T-AT--TC-A--ATAAC----TTACTTGCATCAA-GGCCAATAGAAACTTGCTTTTG-TCATG
gi|7 : TG----CAT-AT----AT---------T--CG---GT--GTATA-T-TGATTT--ATTTG--G-A---C--AAA-GGGCAGTGG------AA-G-----AGT--G----------CG----GAGCAT-AAGTCG--C--------C-C---TG-TG---T--CGAAT--AAATCA-A-GA---TAC---C---GGA-T---------AT-AA-A-T-AT--T-----A-AA-----TTAATTGTAC--A-GGCCAATAGAAACTTGCTTGTATccagaa
gi|28 : aTG----AAT-GT-TT-AT---------T-TCA---AT--GTATC-T-AGATAT--ATTTG--G-A---C--GAA-gtcggacagaagc
gi|19 : gatttctgttG----TAT-AT-CT-ATAATTAGCTAT-TCG---GT--TT-TC-T-TGATTTCAATTTG--G-A---C--GAAAGGGCGGT-G------AC-GC----AGT--G----------CG----GAGCAA-GAGTCT--C-
gi|30 : attaattaatagtttttgaG----TGT-ATCTT-AT---------T-TTG---GT--GTATC-T-TGATTT--ATTTG--G-A---C--GAA-
gi|16 : tgAT-AT-TT-AT---------T-TCG---GT--GTATC-T-TGATTT--ATTTG--G-A---C--GAA-TGGCGAT-G------AC-G-----GGT--G----------CG----TAACAC-GAGTCT--C-C----GCC-C---TT-CG---T-CCAAAT--AAATCA-A-GA---TAC--AC---CGA-A---------AT-AT-A-T-AT--TT-A--A-
gi|7 : AT-AT-TT-AT---------A-TCC---G---GTATC-T-TGATTT--ATTCG----A---C--ACA-GGGCG----------AC-T-----TAT--G----------CT----CCGCAC----TCT--T-CCACTG-C-CC--TT-TG---T-CCAAAT--AAATCA-A-TA---TAC--AC---CGA-AT--------AT-Ataact
gi|12 : atgcaAT-AA-TT-AT---------A-TCA----T--GTTCT-T-TGATTT--ATTTG--G-A---C--AAA-GG--AGT-GTTCTATAC-G-----AAA--G----------CGA---AAACAC-AAGTCT--G-C----GTT-C---TT-CG---T-CCACAT----ATTA-A-AA---TATAAAC---CGG-A---------AT-AA-ATT-AT--Ttaaattaattgtacaggccaatagaaacttgcttgtatgtcggacagaagc
gi|13 : aagttattggaT-AT---------T-CCT---AT--GTATC-T-TGCTTT--ATTTG--G-A---C--AAA-GGGCAGA-G------AC-T-----CGT--G----------CT----TCGCAC-TCGTCA--C-C----A-C-CC--TT-TG---T-CCAAAT--AAATCA-A-GA---TAC--AC---CGA-A---------AT-AA-A-T-AT--GC-A--A-t
gi|24 : acagtaagtactagctaT--GTATCCT-TGATTT--ATTTG--ATG---C--GAA-GGGCGGT-G------AC-C-----GGT--G----------CG----CAGCAC-GAGTCT--CGC----G----------CA---C-CGAAAT--AAAT------A---TAC-----------A---------AT-AA-C-T-AT--
gi|20 : --GTATC-T-TGATTT--ATTTG--G-A---C--GAA-GGGC--------------------------------------------------AGTCT--C-C----G-C-CA--TT-TG---T-CCAAAT--AAATCA-A-GA---CAC--GC---CAA-A---------AT-AA-A-T-AT--TC-A--ATAATTAACTTACTTGTATCAA-
gi|23 : ATC-T-T-ATAT--AATTG--G-A---C--GAA-GGGCGGA-G------AC-T-----CGT--G----------CT----TTGCAC-TCGTCA--C-C----G-C-CC--TT-CG---T-CCAAAC--AAATCA-A-GATATTAT--AC-------A---------AT-AA-C-T-AT--T
gi|19 : gcGCACTGCGTCA--C-C----G-C-CCT-TT-CG---T-CCAAATTGAAATCA-A-GA----AA--AC---CGA-ATAGCTAATTAT-AG-A-T-ATACTCAA--A-AA-----CTATT
gi|28 : attaattTTT--C-T----G-T-T---TT-CG---T-CCAAAT--ATATCT-A-GA---TAC--AT---TGA-A---------AT-AA-A-C-AT--TC-A--ggagcaagagtctc
gi|30 : ga---TT-CG---T-CCAAAT--AAATCA-A-GA---TAC--AC---CAA-A---------AT-AAGA-T-A
19 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): ATGCCACCGATAGAAAGACAAATCGGATGGAAAGACCGGGTCGTGCGAGATTTATAATCTTTGTAATAAGCAAAGCAGCACGTGAATCACCCTACGCAATGGTGAGATCGATTTTAAAGCCCATTTTAACAAGTAGCGTTCCATGTCTTTTAAAAAAATTTATTCGTTAATTTTTTTATTGTATTAAGAAAAAGAATTCTAAAGATTGTTCCTTGTATACAAAATTGTCAAGTTCTCATTGACAGACGCATGCTAGGTTGTTGTATCTAAGGAGAATCCT
Unaligned ( gi|4 ): GGCTGGATCGTGGACGACGATGTATATTTTGTCGTTAAAGCAAATGCACTTGGTCACCCTGCATGTTTTGAGTTAAATTATTACGAAGCTCATGTGTATTATTAGTACACGCTGTCATGTCTAAATTATCTTATTCTGTTTTATGTACTGTAATAAATAATTAAGGAACTTTAAAATATTTATCCTTGTACATGTATTATGATTTTATAATTCTTCGTTGACGGACCACGTATCGTT
Unaligned ( gi|5 ): TGAAGACCGGGTCGTGGCGAAGTATATAAATTTTTGTAAAAGCAAAAGCACGTGTGCACCTACAGCAGTTTGAGTCCGAATATTTCAAAGCGATGTGTTTTACAAGTAGCGAGCCACGGTCTTAAAAAATCTTATTCGTTTTTTTTAATGTAAGAAAAAAGAACTTCAAAGATTTATCTGTATTAAATTTCACATCTCATTGATGGATACCTTCGTATTGTTGTTTTGAG
Unaligned ( gi|6 ): AATGCACGTGGTCACCCTACAACATGTATTACGAAACCCATGTGTTTTACAAGTACGCACTACCATGTCTTAAAAAATCTTATTCCGTTTTTTATTGTAATAAATAATTAAAGAACTTTAAAAGATTTATTCTTGTATATAAGATTTTACAATTCTTCATTGACTGACCACGTATTTTT
Unaligned ( gi|8 ): ACGCGCTGTCATGGTCCTTTTAAAAATCTTGTATTCGTTTTTTTTTTAATTGTTAGATAAATGATTGAAGACACTGTTAAAGATTTTAGTCTTGTAATTAAGATTGTACAATTCTTCAATTGACGGACCACTTAATTTCGTTGCT
Unaligned ( gi|11 ): GCCGGGCCATGGACGAGAATTTATACAAATGCACGTGTCACCCACAATATGATTATTACGAAGCCATGTGTTTTACAAGTAGTTAGTACGCGCTGTCATGTCTTAAACAATCTTATTCCGTTTTATTTATTGCAA
Unaligned ( gi|14 ): GAAGCCCATGTGTTTTACATATCTTAAAAAATCTTATTCCTTTTTTTCTTCTTGCAATAAAACAAGAACTTCAAAAATATTTATCCTTGTATATCAGATTTTACAAGTCTTCATTGACGGACAA
Unaligned ( gi|15 ): ATTTTGTCGTGAAAGCAAATGCACGTGGTAATCCTACAACATTATTATGAATCCCATGCGTTTTACAAGTACGCTTTGCCATGTCTTAAATCTTATTCGGATGTTTTTTATTGCAATAAC
Unaligned ( gi|17 ): AGAATTTAACTCAGTACTACAGATTTTGTGGTAAGGAACAAGAACGTGGTCACCCTACAGCATGTTTTGAATACCGGAACTACCAAGTCCGTGTGTTTTACAATTACGCGCTGT
Unaligned ( gi|18 ): AATAATATATTGATATTAATTATCATTGGGGTTTATAATCTTTATTTAGACGGAGGTAGAACCCAGTACAGAGAAGATGCTGCAGCCTACAACTCGTCAGATACAACAAG
Unaligned ( gi|21 ): CCTACAGCATGTTTTGAGTCGAATTATTTTAAAGCCCATGTGTTAAACAAGTATGCGTTTCCATGTCTTTAAAAAATCTTATTCCGTAATTTTTTTATT
Unaligned ( gi|22 ): ACCAATTGGATTGAATGGCCTGGCCGTGGACGAGAATCTATAGTTTGTTGTAAAAAGCAAAAACACTTGGCATGTTTTGAGTCAAATTATTACGAAGC
Unaligned ( gi|25 ): GTTATGTTGTCGTAAGCAATAGCACGTGGTCACCCTAAAGCATGTTTGGAGTAGAATTATTACTAAG
Unaligned ( gi|26 ): ATATTAAAGAACTTTAAAGATTTATCCTTGTACATACAATTCTTCATTGACGGACCACGT
Unaligned ( gi|27 ): TTATTGTAATAAATAATTAAAGAACTTTAAAAGATTATTCTTGTATTATGATAAGATTTT
Unaligned ( gi|29 ): CATGTTTTGAGTCAAACTATTACGAAGCCCATGTGTTTTACAAGTA
Unaligned ( gi|31 ): ACCAATCGGATTGAATGACCGGGTCGTGGGCGAGAAT
Unaligned ( gi|32 ): TTTATCAGTACCCTTCAAGTTTGTTGTATTG
Unaligned ( gi|33 ): GTACATACAATTCTTCATTGACGGACCACGT
Alignments
lowQualScore : 111111111 1111 111 1111111 33333 1
lowQualScore : 1 4 4 666666666 2 3 3 77 44 3 44 3 77 999999 0000 44 33 44 3 3 888 3 555 2 1 2222222 3 3 4 66 77777 8 3 2 0
lowQualScore : . . . ......... . . . .. .. . .. . .. ...... .... .. .. .. . . ... . ... . . ....... . . . .. ..... . . . .
lowQualScore : 0 0 0 000000000 4 1 1 33 22 1 22 1 99 666666 1111 66 66 33 1 1 999 3 888 5 8 8888888 6 6 0 11 55555 0 2 5 0
consensus : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTG--G-AC--GAA-GGGCGGT--G------AC--G-AGT--GCG-GAGCAC-GAGTCT-C-CGCC-C-TTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAAT----AACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
Reference ( family-544 ) : TTATTGNAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTG--G-AC--GAA-GGGCGGT--G------AC--N-AGT--GCG-GAGCAC-GAGTCT-C-CG-C-C-TTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA-----AACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTGTA-TCATGA
gi|1 : TTATTGTATTAT-TTAT---------TATGG-GCATT-TGTGATTTT-ATTTG--G-AC--GGA-AGTCGAT--G------AC--G-AGT--GCG-GAGCAC--AGTCT-C-CG-CAC-TTCG---T-CAAATAAATCAAGAT-T--GCTTATGG-AATAAAA-TATT--CAAT----AACTTACTTGTATCAAGGGCTAATAGAA--CTGCTTGTA-TCATGA
gi|10 : gtaattatTTGTGGTAT-ATATTCT---------CCCGGTGCTTC-T-TTGTTT--ATTTGGAG-ACGAGAA-GGGCGGTGCG------ATCGA-AGTCGACG-GAGCACTGAGTCTCC-CGCC-C-TTCGGATCCCAAATAAATAAAAAC-----C---CGAGAAT--AA-TATT--CAAT----AACTcatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacccgagatgtaaccgatgctggaccaatcggattcaatttgccggggtcgtggacgagaatttattatttttgtcgtgaaagcaaatgcatgtggacaccctacagcatgttttgtcaaattatttacaaattacaaagttacgtgctgccatgtcttaaaaaaaattattccgtttttttttcattgtaattgaatgatccttatccttgtatataagatttgtaaacaatttcggtcatgacggccacgtatatgtatgttgtgtccgagaatt
gi|12 : tAT-AA-TTAT---------ATCA-TGTTCT-T-TGATTT--ATTTG--G-AC--AAA-GG--AGT--GTTCTATAC--G-AAA--GCGAAAACAC-AAGTCT-G-CGTT-C-TTCG---TCCACAT--ATTAAAATATAAAC---CGG-AAT-AAATTATTTCCAAT----AACTT
gi|13 : TATTGCAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTG--G-AC--AAA-GGGTGGT--G------AC--G-AGT--GCG-AAGCAC-GAGTCT-C-TGCC-C-TTTG---TCCAAATAAAGCAAGATAC--AT---AGG-AAT-At
gi|16 : acagtaagtactagcAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTG--G-AC--GAA-TGGCGAT--G------AC--G-GGT--GCG-TAACAC-GAGTCT-C-CGCC-C-TTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-ATA-TATT--TAAT----AACT
gi|19 : GTAT-AT-CTATAATTAGCTATTCGGTTT-TC-T-TGATTTCAATTTG--G-AC--GAAAGGGCGGT--G------AC--GCAGT--GCG-GAGCAA-GAGTCT-C-
gi|2 : attaattaatagtttttgaTTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTG--G-AC--GAA-GGGCGGT--G------AC--G-AGT--GCG-GAGCAC-GAGTCT-C-CG-C-C-TTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA-----AA-TTATTTGTATCAA-GGCCAATAGAAACTTGCTTTTATTCATGA
gi|20 : GTATC-T-TGATTT--ATTTG--G-AC--GAA-GGGC-----------------------------------AGTCT-C-CG-C-CATTTG---TCCAAATAAATCAAGACAC--GC---CAA-AAT-AAA-TATT--CAATAATTAACTTACTTGTATCAA-agaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|23 : TATC-T-TGATTT--GTTTG--G-AC--GAA-GGGCGGT--G------AC--G-AGT--GCA-AAGCAC-GAGTCT-C-CGCC-C-TTCG---TCCAATTATAT-AAGAT
gi|24 : gcaatagttattgtataaTGTATCCT-TGATTT--ATTTG--ATGC--GAA-GGGCGGT--G------AC--C-GGT--GCG-CAGCAC-GAGTCT-CGCG-------CA---CCGAAATAAAT----ATAC-----------AAT-AAC-TAT
gi|28 : TTT-C-TG-T-T-TTCG---TCCAAATATATCTAGATAC--AT---TGA-AAT-AAA-CATT--CA
gi|30 : gaTGTAT--C-TTAT---------TTTGGTGTATC-T-TGATTT--ATTTG--G-AC--GAA-
gi|7 : tggTGCAT-AT---AT---------T-CGGTGTATA-T-TGATTT--ATTTG--G-AC--AAA-GGGCAGTG-G------AA--G-AGT--GCG-GAGCAT-AAGTCG-C----C-C-TGTG---T-CGAATAAATCAAGATAC---C---GGA-TAT-AAA-TATT---AA-----A--TTAATTGTAC--A-GGCCAATAGAAACTTGCTTGTA-
gi|9 : aATTGTAT-AT-TTAG---------TGCGGTGTATC-T-TAATTT--ATTTG--G-AC--GAA-GGGCGGT--G------AC--G-AGT--GTG-G-----------------------------T---AATAAATCAAGATAC--AT---CGA-AAT-AAA-TATT--CAAT----AACTTACTTGCATCAA-GGCCAATAGAAACTTGCTTTTG-TCATGgtcggacagaagc
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): ATGCCACCGATAGAAAGACAAATCGGATGGAAAGACCGGGTCGTGCGAGATTTATAATCTTTGTAATAAGCAAAGCAGCACGTGAATCACCCTACGCAATGGTGAGATCGATTTTAAAGCCCATTTTAACAAGTAGCGTTCCATGTCTTTTAAAAAAATTTATTCGTTAATTTTTTTATTGTATTAAGAAAAAGAATTCTAAAGATTGTTCCTTGTATACAAAATTGTCAAGTTCTCATTGACAGACGCATGCTAGGTTGTTGTATCTAAGGAGAATCCT
Unaligned ( gi|4 ): GGCTGGATCGTGGACGACGATGTATATTTTGTCGTTAAAGCAAATGCACTTGGTCACCCTGCATGTTTTGAGTTAAATTATTACGAAGCTCATGTGTATTATTAGTACACGCTGTCATGTCTAAATTATCTTATTCTGTTTTATGTACTGTAATAAATAATTAAGGAACTTTAAAATATTTATCCTTGTACATGTATTATGATTTTATAATTCTTCGTTGACGGACCACGTATCGTT
Unaligned ( gi|5 ): TGAAGACCGGGTCGTGGCGAAGTATATAAATTTTTGTAAAAGCAAAAGCACGTGTGCACCTACAGCAGTTTGAGTCCGAATATTTCAAAGCGATGTGTTTTACAAGTAGCGAGCCACGGTCTTAAAAAATCTTATTCGTTTTTTTTAATGTAAGAAAAAAGAACTTCAAAGATTTATCTGTATTAAATTTCACATCTCATTGATGGATACCTTCGTATTGTTGTTTTGAG
Unaligned ( gi|6 ): AATGCACGTGGTCACCCTACAACATGTATTACGAAACCCATGTGTTTTACAAGTACGCACTACCATGTCTTAAAAAATCTTATTCCGTTTTTTATTGTAATAAATAATTAAAGAACTTTAAAAGATTTATTCTTGTATATAAGATTTTACAATTCTTCATTGACTGACCACGTATTTTT
Unaligned ( gi|8 ): ACGCGCTGTCATGGTCCTTTTAAAAATCTTGTATTCGTTTTTTTTTTAATTGTTAGATAAATGATTGAAGACACTGTTAAAGATTTTAGTCTTGTAATTAAGATTGTACAATTCTTCAATTGACGGACCACTTAATTTCGTTGCT
Unaligned ( gi|11 ): GCCGGGCCATGGACGAGAATTTATACAAATGCACGTGTCACCCACAATATGATTATTACGAAGCCATGTGTTTTACAAGTAGTTAGTACGCGCTGTCATGTCTTAAACAATCTTATTCCGTTTTATTTATTGCAA
Unaligned ( gi|14 ): GAAGCCCATGTGTTTTACATATCTTAAAAAATCTTATTCCTTTTTTTCTTCTTGCAATAAAACAAGAACTTCAAAAATATTTATCCTTGTATATCAGATTTTACAAGTCTTCATTGACGGACAA
Unaligned ( gi|15 ): ATTTTGTCGTGAAAGCAAATGCACGTGGTAATCCTACAACATTATTATGAATCCCATGCGTTTTACAAGTACGCTTTGCCATGTCTTAAATCTTATTCGGATGTTTTTTATTGCAATAAC
Unaligned ( gi|17 ): AGAATTTAACTCAGTACTACAGATTTTGTGGTAAGGAACAAGAACGTGGTCACCCTACAGCATGTTTTGAATACCGGAACTACCAAGTCCGTGTGTTTTACAATTACGCGCTGT
Unaligned ( gi|18 ): AATAATATATTGATATTAATTATCATTGGGGTTTATAATCTTTATTTAGACGGAGGTAGAACCCAGTACAGAGAAGATGCTGCAGCCTACAACTCGTCAGATACAACAAG
Unaligned ( gi|21 ): CCTACAGCATGTTTTGAGTCGAATTATTTTAAAGCCCATGTGTTAAACAAGTATGCGTTTCCATGTCTTTAAAAAATCTTATTCCGTAATTTTTTTATT
Unaligned ( gi|22 ): ACCAATTGGATTGAATGGCCTGGCCGTGGACGAGAATCTATAGTTTGTTGTAAAAAGCAAAAACACTTGGCATGTTTTGAGTCAAATTATTACGAAGC
Unaligned ( gi|25 ): GTTATGTTGTCGTAAGCAATAGCACGTGGTCACCCTAAAGCATGTTTGGAGTAGAATTATTACTAAG
Unaligned ( gi|26 ): ATATTAAAGAACTTTAAAGATTTATCCTTGTACATACAATTCTTCATTGACGGACCACGT
Unaligned ( gi|27 ): TTATTGTAATAAATAATTAAAGAACTTTAAAAGATTATTCTTGTATTATGATAAGATTTT
Unaligned ( gi|29 ): CATGTTTTGAGTCAAACTATTACGAAGCCCATGTGTTTTACAAGTA
Unaligned ( gi|31 ): ACCAATCGGATTGAATGACCGGGTCGTGGGCGAGAAT
Unaligned ( gi|32 ): TTTATCAGTACCCTTCAAGTTTGTTGTATTG
Unaligned ( gi|33 ): GTACATACAATTCTTCATTGACGGACCACGT
Alignments
lowQualScore : 11111111111 1
lowQualScore : 3 3 55555555555 3 3 77 3 44 44 3 3 999999 3 88888 44 4 3 44 0 3 0 555 4 1 555 666 3 3 4 55 9999 8 3 1 0
lowQualScore : . . ........... . . .. . .. .. . . ...... . ..... .. . . .. . . . ... . . ... ... . . . .. .... . . . .
lowQualScore : 6 6 00000000000 1 1 33 1 22 22 1 3 666666 3 33333 66 4 3 33 4 6 5 888 6 3 444 444 6 6 0 55 4444 0 2 0 0
consensus : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
Reference ( family-544 ) : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
gi|1 : TTATTGTATTAT-TTAT---------TATGG-GCATT-TGTGATTTT-ATTTGG-A--CGG--A-AGTCGAT-G------ACG-A-----GT--GCGGAG-CAC--AGTCTCC-GCACTTCG---T-CAAATAAATCAAGAT-T--GCTTATGG-AATAAAA-TATT--CAA----TAACTTACTTGTATCAAGGGCTAATAGAA--CTGCTTGTA-TCATGA
gi|10 : gtaattatTTGTGGTAT-ATATTCT---------CCCGGTGCTTC-T-TTGTTT--ATTTGG-AGACGAGAA-GGGCGGT-G-------CG-ATCGAAGTCGACGGAG-CACTGAGTCTCCCGCCCTTCGGATCCCAAATAAATAAAAAC-----C---CGAGAAT-AA--TATT--CAA----TAACTcatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacccgagatgtaaccgatgctggaccaatcggattcaatttgccggggtcgtggacgagaatttattatttttgtcgtgaaagcaaatgcatgtggacaccctacagcatgttttgtcaaattatttacaaattacaaagttacgtgctgccatgtcttaaaaaaaattattccgtttttttttcattgtaattgaatgatccttatccttgtatataagatttgtaaacaatttcggtcatgacggccacgtatatgtatgttgtgtccgagaatt
gi|12 : tAT-AA-TTAT---------ATCA-TGTTCT-T-TGATTT--ATTTGG-A--CAA--A-GGA--GT-GTTCTATACG-A-----AA--GCGAAAACAC-AAGTCTGC-GTTCTTCG---TCCACAT--ATTAAAATATAAAC---CGG-AAT-AAATTATTTCCAA----TAACTT
gi|13 : TATTGCAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CAA--A-GGGTGGT-G------ACG-A-----GT--GCGAAG-CAC-GAGTCTCT-GCCCTTTG---TCCAAATAAAGCAAGATAC--AT---AGG-AAT-At
gi|16 : acagtaagtactagcAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-TGGCGAT-G------ACG-G-----GT--GCGTAA-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-ATA-TATT--TAA----TAACT
gi|19 : GTAT-AT-CTATAATTAGCTATTCGGTTT-TC-T-TGATTTCAATTTGG-A--CGA--AAGGGCGGT-G------ACGCA-----GT--GCGGAG-CAA-GAGTCTC
gi|2 : attaattaatagtttttgaTTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-G-CCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA-----AA-TTATTTGTATCAA-GGCCAATAGAAACTTGCTTTTATTCATGA
gi|20 : GTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGC-------------------------------------AGTCTCC-GCCATTTG---TCCAAATAAATCAAGACAC--GC---CAA-AAT-AAA-TATT--CAATAATTAACTTACTTGTATCAA-agaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|23 : TTATTGTAT-A---------------------ATATC-T-TGATTT--GTTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCAAAG-CAC-GAGTCTCC-GCCCTTCG---TCCAATTATAT-AAGAT
gi|24 : gcaatagTGTATCCT-TGATTT--ATTTGATG--CGA--A-GGGCGGT-G------ACC-G-----GT--GCGCAG-CAC-GAGTCT-C-GC--------------------------GC--AC---CGA-AAT-AAA-TATA--CAA----TAACT
gi|28 : TTCG---TCCAAATATATCTAGATAC--AT---TGA-AAT-AAA-CATT--CAat
gi|30 : gatttctgttTGTAT--C-TTAT---------TTTGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-
gi|7 : tggTGCAT-AT---AT---------T-CGGTGTATA-T-TGATTT--ATTTGG-A--CAA--A-GGGCAGTGG------AAG-A-----GT--GCGGAG-CAT-AAGT---C-GCCCTGTG---T-CGAATAAATCAAGATAC---C---GGA-TAT-AAA-TAT----------TAAATTAATTGTAC--A-GGCCAATAGAAACTTGCTTGTA-
gi|9 : aATTGTAT-AT-TTAG---------TGCGGTGTATC-T-TAATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GTG------------------------G---T---AATAAATCAAGATAC--AT---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGCATCAA-GGCCAATAGAAACTTGCTTTTG-TCATGgtcggacagaagc
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): ATGCCACCGATAGAAAGACAAATCGGATGGAAAGACCGGGTCGTGCGAGATTTATAATCTTTGTAATAAGCAAAGCAGCACGTGAATCACCCTACGCAATGGTGAGATCGATTTTAAAGCCCATTTTAACAAGTAGCGTTCCATGTCTTTTAAAAAAATTTATTCGTTAATTTTTTTATTGTATTAAGAAAAAGAATTCTAAAGATTGTTCCTTGTATACAAAATTGTCAAGTTCTCATTGACAGACGCATGCTAGGTTGTTGTATCTAAGGAGAATCCT
Unaligned ( gi|4 ): GGCTGGATCGTGGACGACGATGTATATTTTGTCGTTAAAGCAAATGCACTTGGTCACCCTGCATGTTTTGAGTTAAATTATTACGAAGCTCATGTGTATTATTAGTACACGCTGTCATGTCTAAATTATCTTATTCTGTTTTATGTACTGTAATAAATAATTAAGGAACTTTAAAATATTTATCCTTGTACATGTATTATGATTTTATAATTCTTCGTTGACGGACCACGTATCGTT
Unaligned ( gi|5 ): TGAAGACCGGGTCGTGGCGAAGTATATAAATTTTTGTAAAAGCAAAAGCACGTGTGCACCTACAGCAGTTTGAGTCCGAATATTTCAAAGCGATGTGTTTTACAAGTAGCGAGCCACGGTCTTAAAAAATCTTATTCGTTTTTTTTAATGTAAGAAAAAAGAACTTCAAAGATTTATCTGTATTAAATTTCACATCTCATTGATGGATACCTTCGTATTGTTGTTTTGAG
Unaligned ( gi|6 ): AATGCACGTGGTCACCCTACAACATGTATTACGAAACCCATGTGTTTTACAAGTACGCACTACCATGTCTTAAAAAATCTTATTCCGTTTTTTATTGTAATAAATAATTAAAGAACTTTAAAAGATTTATTCTTGTATATAAGATTTTACAATTCTTCATTGACTGACCACGTATTTTT
Unaligned ( gi|8 ): ACGCGCTGTCATGGTCCTTTTAAAAATCTTGTATTCGTTTTTTTTTTAATTGTTAGATAAATGATTGAAGACACTGTTAAAGATTTTAGTCTTGTAATTAAGATTGTACAATTCTTCAATTGACGGACCACTTAATTTCGTTGCT
Unaligned ( gi|11 ): GCCGGGCCATGGACGAGAATTTATACAAATGCACGTGTCACCCACAATATGATTATTACGAAGCCATGTGTTTTACAAGTAGTTAGTACGCGCTGTCATGTCTTAAACAATCTTATTCCGTTTTATTTATTGCAA
Unaligned ( gi|14 ): GAAGCCCATGTGTTTTACATATCTTAAAAAATCTTATTCCTTTTTTTCTTCTTGCAATAAAACAAGAACTTCAAAAATATTTATCCTTGTATATCAGATTTTACAAGTCTTCATTGACGGACAA
Unaligned ( gi|15 ): ATTTTGTCGTGAAAGCAAATGCACGTGGTAATCCTACAACATTATTATGAATCCCATGCGTTTTACAAGTACGCTTTGCCATGTCTTAAATCTTATTCGGATGTTTTTTATTGCAATAAC
Unaligned ( gi|17 ): AGAATTTAACTCAGTACTACAGATTTTGTGGTAAGGAACAAGAACGTGGTCACCCTACAGCATGTTTTGAATACCGGAACTACCAAGTCCGTGTGTTTTACAATTACGCGCTGT
Unaligned ( gi|18 ): AATAATATATTGATATTAATTATCATTGGGGTTTATAATCTTTATTTAGACGGAGGTAGAACCCAGTACAGAGAAGATGCTGCAGCCTACAACTCGTCAGATACAACAAG
Unaligned ( gi|21 ): CCTACAGCATGTTTTGAGTCGAATTATTTTAAAGCCCATGTGTTAAACAAGTATGCGTTTCCATGTCTTTAAAAAATCTTATTCCGTAATTTTTTTATT
Unaligned ( gi|22 ): ACCAATTGGATTGAATGGCCTGGCCGTGGACGAGAATCTATAGTTTGTTGTAAAAAGCAAAAACACTTGGCATGTTTTGAGTCAAATTATTACGAAGC
Unaligned ( gi|25 ): GTTATGTTGTCGTAAGCAATAGCACGTGGTCACCCTAAAGCATGTTTGGAGTAGAATTATTACTAAG
Unaligned ( gi|26 ): ATATTAAAGAACTTTAAAGATTTATCCTTGTACATACAATTCTTCATTGACGGACCACGT
Unaligned ( gi|27 ): TTATTGTAATAAATAATTAAAGAACTTTAAAAGATTATTCTTGTATTATGATAAGATTTT
Unaligned ( gi|29 ): CATGTTTTGAGTCAAACTATTACGAAGCCCATGTGTTTTACAAGTA
Unaligned ( gi|31 ): ACCAATCGGATTGAATGACCGGGTCGTGGGCGAGAAT
Unaligned ( gi|32 ): TTTATCAGTACCCTTCAAGTTTGTTGTATTG
Unaligned ( gi|33 ): GTACATACAATTCTTCATTGACGGACCACGT
Alignments
lowQualScore : 11111111111 1
lowQualScore : 3 3 55555555555 3 3 77 3 44 44 3 3 999999 3 88888 44 4 3 44 0 3 0 555 4 1 555 666 3 3 4 55 9999 8 3 1 0
lowQualScore : . . ........... . . .. . .. .. . . ...... . ..... .. . . .. . . . ... . . ... ... . . . .. .... . . . .
lowQualScore : 6 6 00000000000 1 1 33 1 22 22 1 3 666666 3 33333 66 4 3 33 4 6 5 888 6 3 444 444 6 6 0 55 4444 0 2 0 0
consensus : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
Reference ( family-544 ) : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
gi|1 : TTATTGTATTAT-TTAT---------TATGG-GCATT-TGTGATTTT-ATTTGG-A--CGG--A-AGTCGAT-G------ACG-A-----GT--GCGGAG-CAC--AGTCTCC-GCACTTCG---T-CAAATAAATCAAGAT-T--GCTTATGG-AATAAAA-TATT--CAA----TAACTTACTTGTATCAAGGGCTAATAGAA--CTGCTTGTA-TCATGA
gi|10 : gtaattatTTGTGGTAT-ATATTCT---------CCCGGTGCTTC-T-TTGTTT--ATTTGG-AGACGAGAA-GGGCGGT-G-------CG-ATCGAAGTCGACGGAG-CACTGAGTCTCCCGCCCTTCGGATCCCAAATAAATAAAAAC-----C---CGAGAAT-AA--TATT--CAA----TAACTcatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacccgagatgtaaccgatgctggaccaatcggattcaatttgccggggtcgtggacgagaatttattatttttgtcgtgaaagcaaatgcatgtggacaccctacagcatgttttgtcaaattatttacaaattacaaagttacgtgctgccatgtcttaaaaaaaattattccgtttttttttcattgtaattgaatgatccttatccttgtatataagatttgtaaacaatttcggtcatgacggccacgtatatgtatgttgtgtccgagaatt
gi|12 : tAT-AA-TTAT---------ATCA-TGTTCT-T-TGATTT--ATTTGG-A--CAA--A-GGA--GT-GTTCTATACG-A-----AA--GCGAAAACAC-AAGTCTGC-GTTCTTCG---TCCACAT--ATTAAAATATAAAC---CGG-AAT-AAATTATTTCCAA----TAACTT
gi|13 : TATTGCAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CAA--A-GGGTGGT-G------ACG-A-----GT--GCGAAG-CAC-GAGTCTCT-GCCCTTTG---TCCAAATAAAGCAAGATAC--AT---AGG-AAT-At
gi|16 : acagtaagtactagcAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-TGGCGAT-G------ACG-G-----GT--GCGTAA-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-ATA-TATT--TAA----TAACT
gi|19 : GTAT-AT-CTATAATTAGCTATTCGGTTT-TC-T-TGATTTCAATTTGG-A--CGA--AAGGGCGGT-G------ACGCA-----GT--GCGGAG-CAA-GAGTCTC
gi|2 : attaattaatagtttttgaTTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-G-CCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA-----AA-TTATTTGTATCAA-GGCCAATAGAAACTTGCTTTTATTCATGA
gi|20 : GTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGC-------------------------------------AGTCTCC-GCCATTTG---TCCAAATAAATCAAGACAC--GC---CAA-AAT-AAA-TATT--CAATAATTAACTTACTTGTATCAA-agaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|23 : TTATTGTAT-A---------------------ATATC-T-TGATTT--GTTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCAAAG-CAC-GAGTCTCC-GCCCTTCG---TCCAATTATAT-AAGAT
gi|24 : gcaatagTGTATCCT-TGATTT--ATTTGATG--CGA--A-GGGCGGT-G------ACC-G-----GT--GCGCAG-CAC-GAGTCT-C-GC--------------------------GC--AC---CGA-AAT-AAA-TATA--CAA----TAACT
gi|28 : TTCG---TCCAAATATATCTAGATAC--AT---TGA-AAT-AAA-CATT--CAat
gi|30 : gatttctgttTGTAT--C-TTAT---------TTTGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-
gi|7 : tggTGCAT-AT---AT---------T-CGGTGTATA-T-TGATTT--ATTTGG-A--CAA--A-GGGCAGTGG------AAG-A-----GT--GCGGAG-CAT-AAGT---C-GCCCTGTG---T-CGAATAAATCAAGATAC---C---GGA-TAT-AAA-TAT----------TAAATTAATTGTAC--A-GGCCAATAGAAACTTGCTTGTA-
gi|9 : aATTGTAT-AT-TTAG---------TGCGGTGTATC-T-TAATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GTG------------------------G---T---AATAAATCAAGATAC--AT---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGCATCAA-GGCCAATAGAAACTTGCTTTTG-TCATGgtcggacagaagc
blockSeqs : . A AATTAGCTATT C . CA T GA GA A G TTCTAT C TCGAA CG G A TG C GAT C A AAA . G . T TC TAAT . A T T
blockSeqs : . . CC . . . . . . . . . . . . A . A . . C A A . . . . . . . A G .
blockSeqs : . . AT . . . . . . . . . . . . A . G . . C A A . . . . . . . A T .
blockSeqs : . . TT . . . . . . . . . . . . T . G . . C A A . . . . . . .
blockSeqs : . . TT . . . . . . . . . . . . G . G . . C A G . . . . . .
blockSeqs : . . TT . . . . . . . . . . . . G . G . . C G A . . . . . .
blockSeqs : . . TT . . . . . . . . . . . . A . G . . C A A . . . . . .
blockSeqs : . . TG . . . . . . . . . . . . C . G . . C A A . . . . . .
blockSeqs : . . T . . . . . . . . . . . . G . A . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ** G* ***
originalCons : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
finalCons : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CACG-AGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): ATGCCACCGATAGAAAGACAAATCGGATGGAAAGACCGGGTCGTGCGAGATTTATAATCTTTGTAATAAGCAAAGCAGCACGTGAATCACCCTACGCAATGGTGAGATCGATTTTAAAGCCCATTTTAACAAGTAGCGTTCCATGTCTTTTAAAAAAATTTATTCGTTAATTTTTTTATTGTATTAAGAAAAAGAATTCTAAAGATTGTTCCTTGTATACAAAATTGTCAAGTTCTCATTGACAGACGCATGCTAGGTTGTTGTATCTAAGGAGAATCCT
Unaligned ( gi|4 ): GGCTGGATCGTGGACGACGATGTATATTTTGTCGTTAAAGCAAATGCACTTGGTCACCCTGCATGTTTTGAGTTAAATTATTACGAAGCTCATGTGTATTATTAGTACACGCTGTCATGTCTAAATTATCTTATTCTGTTTTATGTACTGTAATAAATAATTAAGGAACTTTAAAATATTTATCCTTGTACATGTATTATGATTTTATAATTCTTCGTTGACGGACCACGTATCGTT
Unaligned ( gi|5 ): TGAAGACCGGGTCGTGGCGAAGTATATAAATTTTTGTAAAAGCAAAAGCACGTGTGCACCTACAGCAGTTTGAGTCCGAATATTTCAAAGCGATGTGTTTTACAAGTAGCGAGCCACGGTCTTAAAAAATCTTATTCGTTTTTTTTAATGTAAGAAAAAAGAACTTCAAAGATTTATCTGTATTAAATTTCACATCTCATTGATGGATACCTTCGTATTGTTGTTTTGAG
Unaligned ( gi|6 ): AATGCACGTGGTCACCCTACAACATGTATTACGAAACCCATGTGTTTTACAAGTACGCACTACCATGTCTTAAAAAATCTTATTCCGTTTTTTATTGTAATAAATAATTAAAGAACTTTAAAAGATTTATTCTTGTATATAAGATTTTACAATTCTTCATTGACTGACCACGTATTTTT
Unaligned ( gi|8 ): ACGCGCTGTCATGGTCCTTTTAAAAATCTTGTATTCGTTTTTTTTTTAATTGTTAGATAAATGATTGAAGACACTGTTAAAGATTTTAGTCTTGTAATTAAGATTGTACAATTCTTCAATTGACGGACCACTTAATTTCGTTGCT
Unaligned ( gi|11 ): GCCGGGCCATGGACGAGAATTTATACAAATGCACGTGTCACCCACAATATGATTATTACGAAGCCATGTGTTTTACAAGTAGTTAGTACGCGCTGTCATGTCTTAAACAATCTTATTCCGTTTTATTTATTGCAA
Unaligned ( gi|14 ): GAAGCCCATGTGTTTTACATATCTTAAAAAATCTTATTCCTTTTTTTCTTCTTGCAATAAAACAAGAACTTCAAAAATATTTATCCTTGTATATCAGATTTTACAAGTCTTCATTGACGGACAA
Unaligned ( gi|15 ): ATTTTGTCGTGAAAGCAAATGCACGTGGTAATCCTACAACATTATTATGAATCCCATGCGTTTTACAAGTACGCTTTGCCATGTCTTAAATCTTATTCGGATGTTTTTTATTGCAATAAC
Unaligned ( gi|17 ): AGAATTTAACTCAGTACTACAGATTTTGTGGTAAGGAACAAGAACGTGGTCACCCTACAGCATGTTTTGAATACCGGAACTACCAAGTCCGTGTGTTTTACAATTACGCGCTGT
Unaligned ( gi|18 ): AATAATATATTGATATTAATTATCATTGGGGTTTATAATCTTTATTTAGACGGAGGTAGAACCCAGTACAGAGAAGATGCTGCAGCCTACAACTCGTCAGATACAACAAG
Unaligned ( gi|21 ): CCTACAGCATGTTTTGAGTCGAATTATTTTAAAGCCCATGTGTTAAACAAGTATGCGTTTCCATGTCTTTAAAAAATCTTATTCCGTAATTTTTTTATT
Unaligned ( gi|22 ): ACCAATTGGATTGAATGGCCTGGCCGTGGACGAGAATCTATAGTTTGTTGTAAAAAGCAAAAACACTTGGCATGTTTTGAGTCAAATTATTACGAAGC
Unaligned ( gi|25 ): GTTATGTTGTCGTAAGCAATAGCACGTGGTCACCCTAAAGCATGTTTGGAGTAGAATTATTACTAAG
Unaligned ( gi|26 ): ATATTAAAGAACTTTAAAGATTTATCCTTGTACATACAATTCTTCATTGACGGACCACGT
Unaligned ( gi|27 ): TTATTGTAATAAATAATTAAAGAACTTTAAAAGATTATTCTTGTATTATGATAAGATTTT
Unaligned ( gi|29 ): CATGTTTTGAGTCAAACTATTACGAAGCCCATGTGTTTTACAAGTA
Unaligned ( gi|31 ): ACCAATCGGATTGAATGACCGGGTCGTGGGCGAGAAT
Unaligned ( gi|32 ): TTTATCAGTACCCTTCAAGTTTGTTGTATTG
Unaligned ( gi|33 ): GTACATACAATTCTTCATTGACGGACCACGT
Alignments
lowQualScore : 11111111111 1
lowQualScore : 3 3 55555555555 3 3 77 3 44 44 3 3 999999 3 88888 44 4 3 44 0 3 0 555 4 1 555 666 3 3 4 55 9999 8 3 1 0
lowQualScore : . . ........... . . .. . .. .. . . ...... . ..... .. . . .. . . . ... . . ... ... . . . .. .... . . . .
lowQualScore : 6 6 00000000000 1 1 33 1 22 22 1 3 666666 3 33333 66 4 3 33 4 6 5 888 6 3 444 444 6 6 0 55 4444 0 2 0 0
consensus : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
Reference ( family-544 ) : TTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGTATCAA-GGCCAATAGAAACTTGCTTNTA-TCATGA
gi|1 : TTATTGTATTAT-TTAT---------TATGG-GCATT-TGTGATTTT-ATTTGG-A--CGG--A-AGTCGAT-G------ACG-A-----GT--GCGGAG-CAC--AGTCTCC-GCACTTCG---T-CAAATAAATCAAGAT-T--GCTTATGG-AATAAAA-TATT--CAA----TAACTTACTTGTATCAAGGGCTAATAGAA--CTGCTTGTA-TCATGA
gi|10 : gtaattatTTGTGGTAT-ATATTCT---------CCCGGTGCTTC-T-TTGTTT--ATTTGG-AGACGAGAA-GGGCGGT-G-------CG-ATCGAAGTCGACGGAG-CACTGAGTCTCCCGCCCTTCGGATCCCAAATAAATAAAAAC-----C---CGAGAAT-AA--TATT--CAA----TAACTcatagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacccgagatgtaaccgatgctggaccaatcggattcaatttgccggggtcgtggacgagaatttattatttttgtcgtgaaagcaaatgcatgtggacaccctacagcatgttttgtcaaattatttacaaattacaaagttacgtgctgccatgtcttaaaaaaaattattccgtttttttttcattgtaattgaatgatccttatccttgtatataagatttgtaaacaatttcggtcatgacggccacgtatatgtatgttgtgtccgagaatt
gi|12 : tAT-AA-TTAT---------ATCA-TGTTCT-T-TGATTT--ATTTGG-A--CAA--A-GGA--GT-GTTCTATACG-A-----AA--GCGAAAACAC-AAGTCTGC-GTTCTTCG---TCCACAT--ATTAAAATATAAAC---CGG-AAT-AAATTATTTCCAA----TAACTT
gi|13 : TATTGCAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CAA--A-GGGTGGT-G------ACG-A-----GT--GCGAAG-CAC-GAGTCTCT-GCCCTTTG---TCCAAATAAAGCAAGATAC--AT---AGG-AAT-At
gi|16 : acagtaagtactagcAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-TGGCGAT-G------ACG-G-----GT--GCGTAA-CAC-GAGTCTCC-GCCCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-ATA-TATT--TAA----TAACT
gi|19 : GTAT-AT-CTATAATTAGCTATTCGGTTT-TC-T-TGATTTCAATTTGG-A--CGA--AAGGGCGGT-G------ACGCA-----GT--GCGGAG-CAA-GAGTCTC
gi|2 : attaattaatagtttttgaTTATTGTAT-AT-TTAT---------TTCGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCGGAG-CAC-GAGTCTCC-G-CCTTCG---TCCAAATAAATCAAGATAC--AC---CGA-AAT-AAA-TATT--CAA-----AA-TTATTTGTATCAA-GGCCAATAGAAACTTGCTTTTATTCATGA
gi|20 : GTATC-T-TGATTT--ATTTGG-A--CGA--A-GGGC-------------------------------------AGTCTCC-GCCATTTG---TCCAAATAAATCAAGACAC--GC---CAA-AAT-AAA-TATT--CAATAATTAACTTACTTGTATCAA-agaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
gi|23 : TTATTGTAT-A---------------------ATATC-T-TGATTT--GTTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GCAAAG-CAC-GAGTCTCC-GCCCTTCG---TCCAATTATAT-AAGAT
gi|24 : gcaatagTGTATCCT-TGATTT--ATTTGATG--CGA--A-GGGCGGT-G------ACC-G-----GT--GCGCAG-CAC-GAGTCT-C-GC--------------------------GC--AC---CGA-AAT-AAA-TATA--CAA----TAACT
gi|28 : TTCG---TCCAAATATATCTAGATAC--AT---TGA-AAT-AAA-CATT--CAat
gi|30 : gatttctgttTGTAT--C-TTAT---------TTTGGTGTATC-T-TGATTT--ATTTGG-A--CGA--A-
gi|7 : tggTGCAT-AT---AT---------T-CGGTGTATA-T-TGATTT--ATTTGG-A--CAA--A-GGGCAGTGG------AAG-A-----GT--GCGGAG-CAT-AAGT---C-GCCCTGTG---T-CGAATAAATCAAGATAC---C---GGA-TAT-AAA-TAT----------TAAATTAATTGTAC--A-GGCCAATAGAAACTTGCTTGTA-
gi|9 : aATTGTAT-AT-TTAG---------TGCGGTGTATC-T-TAATTT--ATTTGG-A--CGA--A-GGGCGGT-G------ACG-A-----GT--GTG------------------------G---T---AATAAATCAAGATAC--AT---CGA-AAT-AAA-TATT--CAA----TAACTTACTTGCATCAA-GGCCAATAGAAACTTGCTTTTG-TCATGgtcggacagaagc
19 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): ATGCCACCGATAGAAAGACAAATCGGATGGAAAGACCGGGTCGTGCGAGATTTATAATCTTTGTAATAAGCAAAGCAGCACGTGAATCACCCTACGCAATGGTGAGATCGATTTTAAAGCCCATTTTAACAAGTAGCGTTCCATGTCTTTTAAAAAAATTTATTCGTTAATTTTTTTATTGTATTAAGAAAAAGAATTCTAAAGATTGTTCCTTGTATACAAAATTGTCAAGTTCTCATTGACAGACGCATGCTAGGTTGTTGTATCTAAGGAGAATCCT
Unaligned ( gi|4 ): GGCTGGATCGTGGACGACGATGTATATTTTGTCGTTAAAGCAAATGCACTTGGTCACCCTGCATGTTTTGAGTTAAATTATTACGAAGCTCATGTGTATTATTAGTACACGCTGTCATGTCTAAATTATCTTATTCTGTTTTATGTACTGTAATAAATAATTAAGGAACTTTAAAATATTTATCCTTGTACATGTATTATGATTTTATAATTCTTCGTTGACGGACCACGTATCGTT
Unaligned ( gi|5 ): TGAAGACCGGGTCGTGGCGAAGTATATAAATTTTTGTAAAAGCAAAAGCACGTGTGCACCTACAGCAGTTTGAGTCCGAATATTTCAAAGCGATGTGTTTTACAAGTAGCGAGCCACGGTCTTAAAAAATCTTATTCGTTTTTTTTAATGTAAGAAAAAAGAACTTCAAAGATTTATCTGTATTAAATTTCACATCTCATTGATGGATACCTTCGTATTGTTGTTTTGAG
Unaligned ( gi|6 ): AATGCACGTGGTCACCCTACAACATGTATTACGAAACCCATGTGTTTTACAAGTACGCACTACCATGTCTTAAAAAATCTTATTCCGTTTTTTATTGTAATAAATAATTAAAGAACTTTAAAAGATTTATTCTTGTATATAAGATTTTACAATTCTTCATTGACTGACCACGTATTTTT
Unaligned ( gi|8 ): ACGCGCTGTCATGGTCCTTTTAAAAATCTTGTATTCGTTTTTTTTTTAATTGTTAGATAAATGATTGAAGACACTGTTAAAGATTTTAGTCTTGTAATTAAGATTGTACAATTCTTCAATTGACGGACCACTTAATTTCGTTGCT
Unaligned ( gi|11 ): GCCGGGCCATGGACGAGAATTTATACAAATGCACGTGTCACCCACAATATGATTATTACGAAGCCATGTGTTTTACAAGTAGTTAGTACGCGCTGTCATGTCTTAAACAATCTTATTCCGTTTTATTTATTGCAA
Unaligned ( gi|14 ): GAAGCCCATGTGTTTTACATATCTTAAAAAATCTTATTCCTTTTTTTCTTCTTGCAATAAAACAAGAACTTCAAAAATATTTATCCTTGTATATCAGATTTTACAAGTCTTCATTGACGGACAA
Unaligned ( gi|15 ): ATTTTGTCGTGAAAGCAAATGCACGTGGTAATCCTACAACATTATTATGAATCCCATGCGTTTTACAAGTACGCTTTGCCATGTCTTAAATCTTATTCGGATGTTTTTTATTGCAATAAC
Unaligned ( gi|17 ): AGAATTTAACTCAGTACTACAGATTTTGTGGTAAGGAACAAGAACGTGGTCACCCTACAGCATGTTTTGAATACCGGAACTACCAAGTCCGTGTGTTTTACAATTACGCGCTGT
Unaligned ( gi|18 ): AATAATATATTGATATTAATTATCATTGGGGTTTATAATCTTTATTTAGACGGAGGTAGAACCCAGTACAGAGAAGATGCTGCAGCCTACAACTCGTCAGATACAACAAG
Unaligned ( gi|21 ): CCTACAGCATGTTTTGAGTCGAATTATTTTAAAGCCCATGTGTTAAACAAGTATGCGTTTCCATGTCTTTAAAAAATCTTATTCCGTAATTTTTTTATT
Unaligned ( gi|22 ): ACCAATTGGATTGAATGGCCTGGCCGTGGACGAGAATCTATAGTTTGTTGTAAAAAGCAAAAACACTTGGCATGTTTTGAGTCAAATTATTACGAAGC
Unaligned ( gi|25 ): GTTATGTTGTCGTAAGCAATAGCACGTGGTCACCCTAAAGCATGTTTGGAGTAGAATTATTACTAAG
Unaligned ( gi|26 ): ATATTAAAGAACTTTAAAGATTTATCCTTGTACATACAATTCTTCATTGACGGACCACGT
Unaligned ( gi|27 ): TTATTGTAATAAATAATTAAAGAACTTTAAAAGATTATTCTTGTATTATGATAAGATTTT
Unaligned ( gi|29 ): CATGTTTTGAGTCAAACTATTACGAAGCCCATGTGTTTTACAAGTA
Unaligned ( gi|31 ): ACCAATCGGATTGAATGACCGGGTCGTGGGCGAGAAT
Unaligned ( gi|32 ): TTTATCAGTACCCTTCAAGTTTGTTGTATTG
Unaligned ( gi|33 ): GTACATACAATTCTTCATTGACGGACCACGT