lowQualScore : 11111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111
lowQualScore : 111 22222222 111 11 44444444444444444444444444444 1 222222222222222222 1111111 33333333333333 11111 22 3333333 444444444 44 1 55555555555555555555555555555555555 11 8888888888888888888888888888888888888888888888 222222 11111 111 11 1 3333333333 1 333333333333333333 1 111 1 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 111 1 1 11 1 11111 1 11 1 1 111 22 1 2 11 1 111 333333333333333333333333333333 11 11 1 77777777777 1 11 8888888888 111 1 1 1111111 111 444444 3333333 1 2222 11 33333333 22222 222 2222 1 222 3333333333333 1 11 7777777777777777777777777777 1 22 1
lowQualScore : 66 333 7777 11111111 88 8888 4 4 666 4 55 11 00000000000000000000000000000 1 77 66 5 999 666666666666666666 66 66 66 4444444 11111111111111 66 66 22222 88 3333333 111111111 33 3 22222222222222222222222222222222222 11 8 3 11 8 8888888888888888888888888888888888888888888888 666666 77777 444 8 66 0 4444444444 0 999999999999999999 3 777 3 88 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22 555 0 0 33 0 88888 3 0 99 0 0 4 4 3 333 4 2 6 3 33 77 0 0 888 11 2 8 0 1 999 8 8 000000000000000000000000000000 88 11 999 4 2 22222222222 7 7 2 88 6 6 7777777777 777 2 6 0 3 3 3 3333333 555 3 3 444444 2 99 1 6666666 0 0000 33 55555555 8 5 8 8 0 22222 888 0 5555 4 0 000 3 2 5555555555555 0 8 11 4444444444444444444444444444 0 44 0
lowQualScore : .. ... .... ........ .. .... . . ... . .. .. ............................. . .. .. . ... .................. .. .. .. ....... .............. .. .. ..... .. ....... ......... .. . ................................... .. . . .. . .............................................. ...... ..... ... . .. . .......... . .................. . ... . .. ...................................................................................................................... .. ... . . .. . ..... . . .. . . . . . ... . . . . .. .. . . ... .. . . . . ... . . .............................. .. .. ... . . ........... . . . .. . . .......... ... . . . . . . ....... ... . . ...... . .. . ....... . .... .. ........ . . . . . ..... ... . .... . . ... . . ............. . . .. ............................ . .. .
lowQualScore : 99 999 7777 88888888 66 5555 0 0 333 0 55 00 33333333333333333333333333333 4 99 99 7 444 444444444444444444 11 11 11 4444444 33333333333333 11 11 55555 55 3333333 888888888 77 3 99999999999999999999999999999999999 88 0 2 00 0 6666666666666666666666666666666666666666666666 000000 22222 000 0 22 2 8888888888 0 000000000000000000 3 777 3 33 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 88 000 0 0 22 5 55555 2 0 88 2 0 0 5 2 888 2 5 0 2 88 22 0 0 888 00 8 0 8 4 222 0 0 888888888888888888888888888888 00 00 444 5 5 22222222222 3 3 0 33 7 7 0000000000 777 0 7 0 2 2 2 0000000 888 5 2 888888 5 22 2 5555555 0 8888 88 55555555 0 0 0 0 8 44444 888 8 0000 5 2 888 2 5 2222222222222 0 0 00 5555555555555555555555555555 0 22 0
consensus : NTGTATTAGTTACC--GT-ATATTTT----TCTATTGGTT--------TGCT--ATAG----A-TACC-C-GATGACA-T--T--TTG--A-----NAC--A-C-CA-C-----GG-GGG-C--GGCG--C-CCCG--AGTG-------NGTG-T---TTCAAA--ATG--TC--ATCGG-------GT--A--T--CTATA-GCAA--AC--CAA-----TAGAAAAA--TATAA-------CGGTA---AC----TCACTTGTA-CCATA-GCCACGCCC----CG-GTTG-C---A--CCCC-CAAGTT-GACTCTAAA-CTCGTGCAAA--G-TCTGA---G-------TTCGAG-AC-A-G-AGTA--GAA-------NA-GTATTCAT---TA-CAANNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA-AA-TGNCA-GTTTGGAAAAAGC-TGT--TCAG-GNANGTTGTAGACCTGTTGGAGCTATTTTCCCATNNTNTCTTTGCAAGGTACATTCTAACGAGGGGNTNCTACA------------GGAAA-A-A-CC--GCA--GC-TGG-GTATTGGTGTT--AAACTAAC-AAA-TTAT-CAACG--T--TTGTGAAAT-CTATT-TGT-GACANGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGCA-TACAGCANT-GTAATCANGCGGGCGTCGAGGAACAA-GAAATTATGA-ACCGA-A-TA-------G-G---------ATC-ATAA---ATCTG-TTCGTCA--TT-AGAAACAAAAGAACAT-----T-GGGTGATATGATGAA--ATTAAGAGATATCCAGTGTTT-------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGC-AATCCGTCCAGATTCATGCACGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCTACGTGCTTNCG-AGTTCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGA-ACG-ATG----------ATATTTGTGGNTT-G-ATGTA-TGTGAGATAATCATCNCCC-TTTTTTTT
Reference ( gi|2 ) : TTGTATTAGTTACC--GT-AGATTTT----TCTATTGGTT--------TGCT--ATAG----A-TACC-C-GTTGACA-T--T--TTG--A-----TAC--A-C-CA-T-----GA-GGG-C--AGCG--C-CCCG--AGTG-------GGTG-T---T-CAAA--ATG--TC--ATCGG-------GT--A--T--AT-TA-GCAA--AC--CAA-----TAGAAAAAC-TATAA-------CGGTA---A-----TCACTTGTAACCATA-GCCACGCCC----CAAGTTGACTCTACGCCCC-CAAGT--GACTCTAAA-CTCGTGCAAA--G-TCT-----G-------TTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TG-CAATTT--TTG---TTA-CAATGTCGTATCT-GA-T-AC-TGTG-AA-A--CCGA-AACTGCCA-GTTTGGAAAAAGC-TGT--TTAGCGGAGG--GTATATCCGTCGTAGCTTCTTTTCT-TAATTTCTTT------TACA--------AGGAGATTCTACA------------GGAGA---------GC---GC-TGG-GT---GGAATT--AAACTAAC-AAA-TTAT-CAGCA--T--TTATGAAAT-CTATT-TGT-GACAAGGATGGAT-TTGACGGCAATTCGGGAAACAAATCTGTGC--TACAGCATT-GTA-TCAGGTGGGTGTTGAGGAACAA-GAAATTATCA-ACCGA-A-TA-------G-T---------ATT-TTTA---ATCTG-TTCGTCA--TT-AAAAACAGAAGAACATTCAATTTGGATGATATGATGAA--ATTAAGAGATATCCAGTGTTTTACTTTTAGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCTGTGAATCCGTCCAGATTTATGCATAAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCTACATATTTTAG-AGTGCAT-TAGG-GTA-TCCAAGT-A-GATG----TTTGACTCAGACTTCGGCAGATGT-T--GTTTTA-TATCCG-TAAAGA-ACA-ATG----------ATATCTGTGGGTT-A-ATGTA-TGTGAGATAATCATCAACC-TTTTTTTT
gi|13 : TATATTAGTTACC--AT-AG-----------------TT--------TGCA--ATAG----A-TACC-C-GATGACA-T--T--TTGAAA-----TAC--A---CA-C-----GAGGGG-C--AGCG--
gi|20 : TGTATTAGTTACC--AG-ATATTCT----TCTATTGGTT--------TGCT--ATAaaacatttcaaaatgtaaatgatgcataccagtttatgaatatgaaaactgacagtga
gi|1 : aGTATTAGTTACC--GT-ATATTTT----TCTATTGGTT--------TGCT--ATAG----A-TACC-C-GATGATA-T--T--TGG--A-----AAC--A-C-GAAC-----GA-GGGGC--AGCG--C-CCCG--AGTG-------GGTG-T---TTCAAA--ATG--TC--ATCGG-------GT--A--T--CTATA-GCAA--AC--CAA-----TAGAAAAA--TATAA-------CGGTA---AC----TCGCTTGTA-TCATA-GCCACG----------------------CCCC-CAAGTT-GACTCTTAA-CTTGTGCAAA--G-TCT-----G---------CG--------------------------------TTCAT---TA-CAATTT--TTG---TTA-CA-TGGCGTATTTCGA-TGAC-TGTG-GT-A--C-GA-A--TGGCA-GTT--GAAAAAGC-TGT--TTAG-GGAG----TAGAC---TTGGAGCTATTTTTCC-TTATGTCTTT------TACA--------AGGGACTTCTACAGAAGCGCTGGGCGGAAAAAAATCCA-GCACAGC-AGT-GTATTGGTGTT--AAACTAACCAAA-TTA--CAGCA--TGTTTATGAAATTCTATT-TGTTGACATGG-TGG-T-TGGACGGCAAATCGGGAAACGAATCTGTGCAATACAGCATTTGCAATCAAGCGG-CGC-GAGGAACAAAGAATTTATGACACCGA-AATA-------GAG---------AT---------GTCT--TTCGTTAGGTT-TTAAACA-----ACA---AATTGCGGTG-T-TGATGAA--ATTAAGA-ATATCCAGTGTTT-------AGAACCAAGA-GCGCATCAA-AA-AGAA-C--GTGCT-G--ATGATCAAT-CCTG-CTCTG--AATC-GTCCAGATTCATGCAAAAGGAGC-CAAGATTACATCATTTAA----TTTGGTGGA--TTCTACGTGCTC--G-AGTTCATGTA-G-GTA-TC--AGT-GTGATGATGATGTGAC-CAGATT---GCAGATTTAT--GTTTTA-T-TTCT-TAAAGAGACG-ATATTGTCGTTTTATATGTATGTACT-G-ATGTATTGTGAGATCATCCCCA--C-TTTTTTa
gi|9 : TATTATTTACC--CT-AGTGTGT----T---TTGACT--------T-----ATAGGAAGA-TACCTC-ACCGACAGT--TCCTTGGTA-----TACTTA-C-TA-TTCAACGA-AGG-CCCAACG--CTCCCGTTAGTG-------TCCG-TCTTT-CAAACCATG--TC--ATCGG-------GTTTC--T--CT-TACGCAA---C--CAA-----TAGAAAAagtattcaaccacaatttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|12 : tttacaaacgcttATTAGTTACCACGT-TTATATT----TCTATTGGTT--------TGCT--ATAG----A-TACC-C----GACA-T--T--TTGGTA-----TAC--A-CACA-C-----GA-GGACC--AGCG--C-CCCG--AGTG-------GGCGTT---T-CAAA--ATG--TC--ATCGG-------GT--T--T--CTATA-GCAA--AC--CAA-----TAGAAA
gi|1 : AGTTACC--GTTATATTTT----TCTATTGGTT--------TGCT--ATAG----A-TACC-C-GATGACA-T--T--TTG--A-----AAC--ACC-CACT-----CG-GGG-C--GCTG--C-CCCT--CGTT-------CGTGTT---T-CCAA--ATA--TC--ATCGG-------GT--A--T--CTATA-GCAA--AC--CAA-----TAGAAAAA--TAT-A-------CGGTA---A-----
gi|7 : gtattagAGCTACT--GTTATATTTT----TCTATTGGTAAA------TGCT--TTAG----A-TACC-C-GATGACA-T--T--TCG--A-----AAC--A-C-Ccgcttgtatcatagccacgcccccaagttgactcttaacttgtgcaaagtctgcgttcattacaatttttgttacatggcgtatttcgatgactgtggtacgaatggcagttgaaaaagctgtttagggagtagacttggagctatttttccttatgtcttttacaagggacttctacagaagcgctgggcggaaaaaaatccagcacagcagtgtattggtgttaaactaaccaaattacagcatgtttatgaaattctatttgttgacatggtggttggacggcaaatcgggaaacgaatctgtgcaatacagcatttgcaatcaagcggcgcgaggaacaaagaatttatgacaccgaaatagagatgtctttcgttaggttttaaacaacaaattgcggtgttgatgaaattaagaatatccagtgtttagaaccaagagcgcatcaaaaagaacgtgctgatgatcaatcctgctctgaatcgtccagattcatgcaaaaggagccaagattacatcatttaatttggtggattctacgtgctcgagttcatgtaggtatcagtgtgatgatgatgtgaccagattgcagatttatgttttatttcttaaagagacgatattgtcgttttatatgtatgtactgatgtattgtgagatcatccccacttttttagtattcaaccacaatttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|19 : tgAGTTACC--GTTATAGTTT----TCTATTGGTT--------TGCTA-ATAG----A-TACC-C-GATGACA-T--T--Tcacttgtactatagccacgccccaagttgactctaaactcgtgcaaagtctgagttcgagacagagtagaaatagatctagtattcatttcaaaatttgttgcatggcgtatcaatact
gi|5 : -AGATTTTGTCGTCTGTTGGTTGCAGGAACTACTTCATAG----AATATC-CTGATGGCA-T--TGTTCG--AACCAACAC--A-A-CA-T-----TG-GGG-C--AGCG--C-CCCG--AGTGCATGTATGGTT-T---T-AAAA--ATGCATCAAATCGGTGATTATGC--AACT--AG-TG-GCAG--ATGACAATTATGTAAAAAAATATATAATACCATGCGATATTCAACTACTCATTTGTA--CATATGCCAGACCCTCCGTGTGTTGTTTTGA-------TAAGT---ACTC-------CGTGCAAA--G-TCCATAGAG-------TTCTGA-ACGA-G-AGTATGGAA-------AT-GTATTCATCCGTA-CGATGTAGTTGACATTA-C--TGGCGTTTAC-AT-T-ACTTGTG-AATA--CCGATGAATGACATGTTTGAAAGAAGCTTGT--Tcactt
gi|9 : TTT----TCTATTGGTTG-------CGTA--AGAG----A-AACC-C-GATGACA-TGGT--TTG--A-----cttagggt
gi|12 : tttacaaacgctttattatttaccctagtgtgttttgacttataggaagatacctcaccgacagttccttggtatacttactattcaacgaaggcccaacgctcccgttagtgtccgtcttTT----TCTATTGGTT--------TGCT--ATAG----A-AACC-C-GATGACA-T--T--TTG--A-----AAC--GCC-CACT-----CG-GGG-C--GCTGGTC-CTCG--TGTG-------TGTA-TA--C-CAAA--ATG-------TCGG-------GT--A--T--CTATA-GCAA--AC--CAA-----TAGAAA----TATAAACG----TGGTA---A-----
gi|13 : attagG--C-CCCT--CGTG-------TGTA-T---TTCAAA--ATG--TC--ATCGG-------GT--ATCT--AT-T--GCAA--AC--TA
gi|7 : tatattagttaccaTG-------GGTG-T---TTCGAA--ATG--TC--ATCGG-------GT--A--T--CT-AAAGCATTTAC--CAA-----TAGAAAAA--TATAA-------CAGTA---GC----TCACTTGTA-CTATA-GCCACGCCC----CAAGTTGAC---------------------TCTAAA-CTCGTGCAAA--G-TCTGA---G-------TTCGAG-AC-A-G-AGTA--GAAATAGATCTA-GTATTCAT---TT-CAAAAT--TTG---TTG-C-ATGGCGTATC--AA-T-AC-Tagcgaaacatttcaaaatgtaaatgatgcataccagtttatgaatatgaaaactgacagtga
gi|19 : AA--ATG--TC--ATCGG-------GT--A--TCTAT-TA-GCAA--AC--CAA-----TAG-AAAAC-TATAA-------CGGTA---AC----TCACTT
gi|14 : ACGCCCCGCATGTTTGACTCTAAA-CT-GTGCAAA--GTTCTGA---G-------TTCGAACAC-A-GTAGTA--GAA-------AATGTATTCAT---AA-CAA-TT--TAG---TTA-CAATATC
gi|18 : tgtacatacgcCC-CAAGTT-GACTCTAAAACTCGTGCGAAACG-TCT-----GCATTGATTCCGAG-AC-ATG-AGTG--GGA-------TA-GTATa
gi|3 : TTCAT---TAACAAACT--TTG---TTAGCAATGGCGT-TAT-AACT-AC-TGTGTAA-ATTCCGA-AATGGTCA-GTTTG---AAAGC-TGTGTTCAG-GCATGTTGTA-ATCTG--G-AGCTATTTTCCTATATTTTCTTTGCAAGGTACATTCTAACGAGGAGATGCTGGC------------GGAAACATAATTCAGCA--GCATGGTGTATTGGTGTTTAGAACTAAC-AAAATTATACA-TG--T--TTATGAAAT-CTATTGTCT-GACATGGGTGGAT-TGGACGCAAATT--GGAAATGAATC-GTGC--TACAGC-TT-GTA-TCAGTCCGTCGTCGAGGAACAA-GAATTAATGT-ACCGC-A-TA-------G-G---------A----------ATCT---TCGATA--TTTGAAAACAAAAGAA--------TTGG-TGATAT-ATTGA--ATTAAGAGATATCCAGTG-------TTTAGAGCAAA-A-GCGC-TCAAGAA-AGAAACAAG-GCT-ATA--AATCA-------TCTCCGC---TCCGTCCAGAATCATGCACGA------------------TTTTAAATTTTTTGGTGGA--TTCTACGTGCTTGCGTAGTTCAT-TAGG-G-A-TC--AGTGG-GATGT---TTTGACCCCAAAGTCGGCAG----------------ATCCG-TAAAGA-ACG-ATag
gi|6 : agttgtaactcatgcaattcagagACA------------GGAGA---------AC---GC-TGG-GC---GGAAaggtaatattattgaatttgttagttttattgattgtacatgcatagataacaccccccagctttcttttttagtcttgaagacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggagaagagatgagaagatgtatg
gi|6 : T---GGTGTT--AAACTAAC-AAA-TTAT-CAACA--T--TTGTGAAAT-TTATA-TGT-GACAAGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGC--TACAGCAAT-GTA-TCACGCGGGCGTCGAGGAACAA-GAAATTATGA-ACCGA-A-TA-------G-----------GTC-ATAA---ATCTG-TTCGTCA--TT-AGAAACAAAAGAACATTaaaaattcagctaacaatgcattggtgttaaactaacaaattatcaacatttgtgaaatttatatgtgacaagggtggattggacgacagttcgggaaacgaatctgtgctacagcaatgtatcacgcgggcgtcgaggaacaagaaattatgaaccgaataggtcataaatctgttcgtcattagaaacaaaagaacatt
gi|8 : acaggagaacgctgggcggaaaaaaattcagctaacaatgcatTT--TAACTAAC-AAA-TTAT-CAACAATT--TTGTGAA-T-TTAT---AT-GACAAGGGTGGATGTCCCCGACAGTTCGGGAAACGAATCTGTGCA-CACAGCAAT-GTAATCACGCGGGCGTCGAGGAACAA-G-AATTATGA-ACCGA-A-TA-------G-----------GTC-ATAA---ATCTGTTTCGTCA--TT-AGAA
gi|4 : gggGGCGGCGAGGAACAA-GAAATTATGA-ACCGACA-TACATGTAGG-TCATCCTTCGATTATTTATAAATCTG-TTCGTCA--TT-AAAAACAAAAGAACAT-------GGGTGATATAATGAATAAATAA-AGATATCCAGTGTTTTA------GAGCCAA-AAGCGCGTCAAGAATAGAAACAAGTGCTCATAAATATCACTACCAGTCTC--------CGTCCAGATTC-TGCATA-TGA-TGCAAGA-TACATCTTTTAA---TTTTGGTGGAATTTTTACGTGCTTC-G-AGTGCAT-TAGG-GTAATCCAGGT-G-G-TG----TTTAACCCAGACTT-GGAAGATGT-TAGGTTTTA-TTTCCG-TAAAGA-ACAGATG----------ATAT--------------GTA-TGTGAAATAATCATCCCCCCTTTTTTTT
gi|11 : -AGAAACAAGTGCT-ATAATAATCACT-CCTGTGTCCGCGAATCCGCCCAGATTCATGCATGTGAA-T-CAAGA-TACATCTTTTAA---TTTTGATGGA--TTCTAGGAGCTTTCG-AGTGCAT-TAGG-ATA-TCCAAGT-G-GATG----TTtttaatatgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgt
gi|17 : G-AGTTCAT-TAGACGTA-C---AGT---GACG----TTTGACCCAGACTTC-GCAGATGT-T--ATGTTATTTTCCGTTAAAG
gi|16 : tgaggttcttacgttgcttgctAAGA-ACG-ATG----------GCATTTGTGGCTT------TA-TGTGAGATAATCATCACCC-TTTTT
gi|15 : AGA-ACG-ATG----------ATATTTGTGGTTTTACATGTA-TATGAGATAATCATCCCCC-CTTTTTTcggaggtatggaaaatctacaaattagagaagagagagag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AGAACGAATGACATTTGTGTTTTCTATTTGAGATAATATCCCCTTTTTCAGATCGTGGAACGACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 222 2222 22222222 11 1111111 44444444444444444 222 111111 1111 1111 11111 333333333 2222222 111 33333333333333333333333 222222222 3333333333 111 111 11 111111 1111111 11 1 11 1 1 11 1 3333 22222222 22 22 22222222 7777777777777777777777777 11 1 22222 22 11 222222222 6666666666666666666666 33333333 11 1 3333333 1 1 3333 222222222 1111 111 11 2222 111 1111 5555555555555555555555555555555555555555555 111 111
lowQualScore : 000 3 0000 00000000 77 6 6 6 1 6 88 5555555 66666666666666666 111 6 99 888 666666 66 66 77 5 77 2222 7777 0000 77 44444 8 222222222 6666666 444 8 66666666666666666666666 6 7 6 1 99 6 111111111 99 777 99999 99 1111111111 111 6 88 99 111 6 00 6 444444 8 8 7777777 2 33 0 11 0 3 6 0 33 3 1 4444 77777777 0 44 22 1 55 33333333 9 1 1 9999 8888888888888888888888888 3 11 6 0 11111 0 8 999 8 1 3 0 8 1 0 88 999 11 1 5 3 6 6 333333333 5555555555555555555555 99 99 6 8 5 0 55555555 3 3 6 33 2 2 0 2222222 0 0 6 2 8 0 0 0 88 11 888 1 0 0 1 0000 0 111111111 8 4444 99 6 6 000 6 3 6 6 6 33 6 6 0000 000 0 4444 0 8 1 8 5 5 5 5 7777777777777777777777777777777777777777777 5 000 6 555
lowQualScore : ... . .... ........ .. . . . . . .. ....... ................. ... . .. ... ...... .. .. .. . .. .... .... .... .. ..... . ......... ....... ... . ....................... . . . . .. . ......... .. ... ..... .. .......... ... . .. .. ... . .. . ...... . . ....... . .. . .. . . . . .. . . .... ........ . .. .. . .. ........ . . . .... ......................... . .. . . ..... . . ... . . . . . . . .. ... .. . . . . . ......... ...................... .. .. . . . . ........ . . . .. . . . ....... . . . . . . . . .. .. ... . . . . .... . ......... . .... .. . . ... . . . . . .. . . .... ... . .... . . . . . . . . ........................................... . ... . ...
lowQualScore : 888 2 0000 77777777 99 7 7 7 7 7 33 3333333 55555555555555555 888 7 22 999 444444 99 99 99 7 99 1111 6666 4444 99 33333 0 000000000 0000000 444 0 55555555555555555555555 7 3 7 0 22 7 888888888 88 888 22222 22 0000000000 777 7 55 22 777 7 55 0 000000 0 0 0000000 5 88 0 00 0 2 5 0 88 3 0 7777 00000000 7 33 00 0 33 77777777 0 0 0 1111 2222222222222222222222222 2 00 0 8 66666 8 0 888 0 0 2 8 0 8 8 44 888 44 0 0 2 7 7 333333333 5555555555555555555555 22 22 7 0 6 8 55555555 2 2 5 88 5 5 0 5555555 0 0 5 5 0 8 8 8 88 88 888 0 8 8 4 4444 8 000000000 0 8888 22 7 7 777 7 0 7 7 7 88 7 7 8888 888 8 8888 6 0 0 0 7 7 7 7 0000000000000000000000000000000000000000000 7 000 6 777
consensus : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTGG--GCGT------TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAG-TTGACTCT-AAACTCGTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TCAG-GGA-G--GTA-ATCCGTCGGAGCTATTTTTCT-TAATTTCTTT-GCAAGGTACATTCTA--GAGGAGATGCTGCGGGAAA---AA-T-C--CGCAGC-TGGC---GTATTGGTGTT--AAACTAAC-AAATTATCAAC--G--TTTATGAAAT-CTATT-TGT-GACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC-ATACAGCA-TTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGA--AATTAAGAGATATCCAGTG-TTT-------AGAGCC-AA-AGCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GCTT-C-G-AGTNCAT-TAGG-GT-ATCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGA-AC-GA-T-G----------AT-----------ATTTG-TGG----NTT-A--TGTA-TGTG---AGATAATCATCCCC---CTTTTTTTT
Reference ( family-5395 ) : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--GGCGC-CCCG--AGTGN--GTGT------TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------CACCCCCAAG-TTGACTCT-AAACTCGTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------NA-GTATTCAT---TA-CAANNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGN-CA-GTTTGGAAAAAGC-TGT--TCAG-GNANGTTGTAGACCTGTTGGAGCTATTTTCCCATNNTNTCTTT-GCAAGGTACATTCTAACGAGGGGNTNCTACAGGAAA---AA---C--CGCAGC-TGG----GTATTGGTGTT--AAACTAAC-AAATTATCAAC--G--TTTGTGAAAT-CTATT-TGT-GACANGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGC-ATACAGCA-NTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGA--AATTAAGAGATATCCAGTG-TTT-------AGAGCC-AA-AGCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGC-AATCCGTCCAGATTCATGCACGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GCTTNC-G-AGTTCAT-TAGG-GT-ATCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGA-AC-GA-T-G----------AT-----------ATTTG-TGG----NTTGA--TGTA-TGTG---AGATAATCATCNCC---CTTTTTTTT
gi|1 : GTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGATA-TT--TGG--AA---ACAC-G---------AACGA-GGGGC--AGCGC-CCCG--AGTGG--GTGT------TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCGCTTGTA-TCATA-GCCACGCCC--C--------------------CAAG-TTGACTCT-TAACTTGTGCAAA--G-TC-----T---G----CG--------------------------------TTCAT---TA-CAATTT--TTG---TTA-CA-TGGCGTATTTCGA-TGAC-TGTG-GT-A--C--G--AA-TGG-CA-GTT--GAAAAAGC-TGT--TTAG-GGA----GTAGAC---TTGGAGCTATTTTTCC-TTATGTCTTTTACAAGGGAC-TTCTACAGAAGCGCTGG-GCGGAAAA---AAATCCAGCACAGC-AGT----GTATTGGTGTT--AAACTAACCAAATTA-CAGCATG--TTTATGAAATTCTATT-TGTTGACATGG-TGG-T-TGGACGGCAAATCGGGAAACGAATCTGTGCAATACAGCATTTGCAATCAAGC-GGCG-CGAGGAACAAAGAATTTATGACACCGAA-------ATAGAG--AT-----------------GTCT--TTCGTTAGGTTTT-AAACAACAA----ATT------GCGGTG-T-TGATGA--AATTAAGA-ATATCCAGTG-TTT-------AGAACC-AAGAGCGCATCAA-AA-AG-AAC--GTGC---TGATGATCAAT-CCTG-CTCTG--AAT-CGTCCAGATTCATGCAAAAGGAGC-CAAGATTACATCATTTAA----TTTGGTGGA--TTCT-ACGT-GCT--C-G-AGTTCATGTA-G-GT-ATC--AGT-GTGATGATGATGTGA-CCAGATT---GCAGATTTAT--GTTTTA-TTTCT--TAAAGAGAC-GA-T-ATTGTCGTTTTAT-----------ATGTA-TGT----ACTGA--TGTATTGTG---AG---ATCATCCCCA--CTTTTTT
gi|10 : AGA-AC-GAAT-G----------AC-----------ATTTG-T-G----TTT----TCTA-TTTG---AGATAAT-ATC-CC---CTTTTTagtattcaaccacaatttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|11 : -AGAAACAAGTGCT-ATAATAATCACT-CCTGTGTCCGCGAATCCGCCCAGATTCATGCATGTGAA-T-CAAGA-TACATCTTTTAA---TTTTGATGGA--TTCT-AGGA-GCTTTC-G-AGTGCAT-TAGG-AT-ATCCAAGT-G-GATG----TTcagatcgtggaacgacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttt
gi|12 : ATTAGTTACCAC-GTTTATATT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GA---CA-TT--TTGGTAT---ACACAC---------A-CG--AGGACC-AGCGC-CCCG--AGTGG--GCGT------TTCAAA--ATG--TCA--TCGG-G--TTT----CTA-T-AGCA-A--AC--CAAT-----AGAAA
gi|13 : TATATTAGTTACC---ATA-----------------GTT--------TGCA--ATAGA-TACC-C-GATGACA-TT--TTG--AA---ATACAC---------A-CGA-GGGGC--AGCG-----------AA--ACAT------TTCAAA--ATG--T
gi|14 : TGTA-C-ATA-CGCACGCCC--CG-------------------CATGTTTGACTCT-AAACT-GTGCAAA--GTTC-----T---GAGTTCGAACAC-A-GTAGTA--GAA-------AATGTATTCAT---AA-CAA-TT--TAG---TTA-CAATaaatgatgcataccagtttatgaatatgaaaactgacagtga
gi|15 : AGA-AC-GA-T-G----------AT-----------ATTTG-TGG----TTTTACATGTA-TATG---AGATAATCATCCCC---CCTTTTTTatca
gi|16 : AAGA-AC-GA-T-G----------GC-----------ATTTG-TGG----CTT------TA-TGTG---AGATAATCATCACC---CTTTTTgtttaatgtatagaactacaatttgagagagagagagagag
gi|17 : GG--TTCTTACGTTGCTTGCTG-AGTTCAT-TAGACGT-AC---AGT-G--ACG----TTTGACCCAGACTTC-GCAGATGT-T--ATGTTATTTTCCGTTAAAGcggaggtatggaaaatctacaaattagagaagagagagag
gi|18 : tgaCCCAAG-TTGACTCTAAAACTCGTGCGAAACG-TCTGCATT---GATTCCGAG-AC-ATG-AGTG--GGA-------TA-GTAT
gi|19 : AA--ATG--TCA--TCGG-G--TAT----CTA-TTAGCA-A--AC--CAAT-----AGAAAAC-TATA---------ACGGTA-------ACTCACTTag
gi|2 : TGTATTAGTTACC---GTAGATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GTTGACA-TT--TTG--AT---ACAC-C---------A-TG--AGGGC--AGCGC-CCCG--AGTGG--GTGT------T-CAAA--ATG--TCA--TCGG-G--TAT----AT--T-AGCA-A--AC--CAAT-----AGAAAAACTATA---------ACGGTA-------A-TCACTTGTAACCATA-GCCACGCCC--CAA--GTTGACTCTACGCCCCCAAG-T-GACTCT-AAACTCGTGCAAA--G-TC-----T---G--TTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TG-CAATTT--TTG---TTA-CAATGTCGTATCT-GA-T-AC-TGTG-AA-A--CCGA--AACTGC-CA-GTTTGGAAAAAGC-TGT--TTAGCGGAGG--GTATATCCGTCGTAGCTTCTTTTCT-TAATTTCTTT-------TACA--------AGGAGATTCTACAGGAGA------------GC-GC-TGG----GT---GGAATT--AAACTAAC-AAATTATCAGC--A--TTTATGAAAT-CTATT-TGT-GACAAGGATGGAT-TTGACGGCAATTCGGGAAACAAATCTGTGC--TACAGCA-TTGTA-TCAGGTGGGTGTTGAGGAAC-AAGAAATTATCA-ACCG-A-------ATAG-T--ATT------------TTTAATCTG-TTCGTCA--TTAA-AAACAG-AAGAACATTCAATTTG-GATGATATGATGA--AATTAAGAGATATCCAGTG-TTTTACTTTTAGAGCC-AA-AGCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCTGTGAATCCGTCCAGATTTATGCATAAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACAT-ATTTTA-G-AGTGCAT-TAGG-GT-ATCCAAGT-A-GATG----TTTGACTCAGACTTCGGCAGATGT-T--GTTTTA-TATCCG-TAAAGA-AC-AA-T-G----------AT-----------ATCTG-TGG----GTTAA--TGTA-TGTG---AGATAATCATCAAC---CTTTTTTTT
gi|20 : tTGTATTAGTTACC---AGATATTCT----TCTATTGGTT--------TGCT--ATA
gi|3 : aTTCAT---TAACAAACT--TTG---TTAGCAATGGCGT-TAT-AACT-AC-TGTGTAA-ATTCCGA--AA-TGGTCA-GTTTG---AAAGC-TGTGTTCAG-GCATGTTGTA-ATCTG---GAGCTATTTTCCTATATTTTCTTT-GCAAGGTACATTCTAACGAGGAGATGCTGGCGGAAACATAATT-C--AGCAGCATGGT---GTATTGGTGTTTAGAACTAACAAAATTATACAT--G--TTTATGAAAT-CTATTGTCT-GACATGGGTGGAT-TGGACGCAAATT--GGAAATGAATC-GTGC--TACAGC--TTGT-ATCAGTCCGTCGTCGAGGAAC-AAGAATTAATGT-ACCG-C-------ATAG-G--------------------AATC---TTCGATA--TTTGAAAACAA-AAGA--ATT--------GGTGATAT-ATTG--AATTAAGAGATATCCAGTG-TTT-------AGAGCA-AA-AGCGC-TCAAGAA-AGAAACAAG-GCT-ATA--AATCA-------TCTCCGC---TCCGTCCAGAATCATGCACGA------------------TTTTAAATTTTTTGGTGGA--TTCT-ACGT-GCTTGC-GTAGTTCAT-TAGG-G--ATC--AGTGG-GATGT---TTTGACCCCAAAGTCGGCAGA----------------TCCG-TAAAGA-AC-GA-TAG----------GTAATATTATTGAATTTGTTAGTTTTATTGAT-TGTA-CATGCATAGATAA-CACCCCCCAGCTTTCTTTTa
gi|4 : agttgtaactcatgcaattcagagGGCGGCGAGGAAC-AAGAAATTATGA-ACCG-ACATACATGTAG-GTCATCCTTCGATTATTTATAAATCTG-TTCGTCA--TTAA-AAACAA-AAGAACA-T------G-GGTGATATAATGAATAAATAA-AGATATCCAGTGTTTT-------AGAGCCAAA-AGCGCGTCAAGAATAGAAACAAGTGCTCATAAATATCACTACCAGTC--------TCCGTCCAGATTC-TGCAT-ATGA-TGCAAGA-TACATCTTTTAA---TTTTGGTGGAATTTTT-ACGT-GCTT-C-G-AGTGCAT-TAGG-GTAATCCAGGT-G-G-TG----TTTAACCCAGACTT-GGAAGATGT-TAGGTTTTA-TTTCCG-TAAAGA-ACAGA-T-G----------AT----------------------------A--TGTA-TGTG---AAATAATCATCCCC---CCTTTTTTTttagtcttgaagacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggagaagagatgagaagatgtatg
gi|5 : ATTTTGTCGTCTGTTGGTTGCAGGAACTACTTCATAGAATATC-CTGATGGCA-TTGTTCG--AACCAACAC-A---------A-CATTGGGGC--AGCGC-CCCG--AGTGC--ATGTATGGTTTTAAAA--ATGCATCAAATCGGTGATTATGCAACTAGT-GGCA-G--ATGACAATTATGTAAAAAAA-TATATAATACCATGCGATATTCAACTACTCATTTGTA-C-ATATGCCAGACCCTCCGTGTGTTG------TTTTGATAAG-T--ACTC-------CGTGCAAA--G-TC-----CATAGAGTTCTGA-ACGA-G-AGTATGGAA-------AT-GTATTCATCCGTA-CGATGTAGTTGACATTA-C--TGGCGTTTAC-AT-T-ACTTGTG-AATA--CCGATGAA-TGA-CATGTTTGAAAGAAGCTTGT--TCttttaatatgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgt
gi|6 : agCGGAAAA---AA---A--TTCAGC-TAACAATGCATTGGTGTT--AAACTAAC-AAATTATCAAC--A--TTTGTGAAAT-TTATA-TGT-GACAAGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGC--TACAGCA-ATGT-ATCACGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G---TC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------ttagggt
gi|7 : acaggagaacgctgggTGG--GTGT------TTCGAA--ATG--TCA--TCGG-G--TAT----CTA-A-AGCA-TTTAC--CAAT-----AGAAAAA-TATA---------ACAGTA-------GCTCACTTGTA-CTATA-GCCACGCCC--C---------------------AAG-TTGACTCT-AAACTCGTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAAATAGATCTA-GTATTCAT---TT-CAAAAT--TTG---TTG-C-ATGGCGTATC--AA-T-AC-T
gi|8 : GTT--TAACTAAC-AAATTATCAAC--AATTTTGTG-AAT-TTA---TAT-GACAAGGGTGGATGTCCCCGACAGTTCGGGAAACGAATCTGTGC-ACACAGCA-ATGTAATCACGCGGGCGTCGAGGAAC-AAG-AATTATGA-ACCG-A-------ATAG-G---TC------------ATAAATCTGTTTCGTCA--TTAG-AA
gi|9 : ggTATTATTTACCCTAGTGTGTTTTGA--CTTATAGG----------------A-AGA-TACCTC-ACCGACAGTTCCTTG--GT---ATAC-TTACTATTCAA-CG--AAGGCCCAACGCTCCCGTTAGTGTCCGTCT------TTCAAACCATG--TCA--TCGG-G--TTT----CTC-T-TACGCA--AC--CAAT-----AGAAAA
Alignments
lowQualScore : 222 2222 22222222 11 1111111 44444444444444444 11 1111111 1111 1111 11111 333333333 2222222 111 99999999999999999999999 222222222 3333333333 111 111 11 111111 1111111 11 1 11 1 1 111111 1 4444444444444444 1 22 333333333 11 22 88888888888888888888888888 11 22222 22 11 222222222 6666666666666666666666 11 2222222 1 11 4444444 111 111111 11111111 1111 1111 11 2222 111 1111 22222222222 4444444444444444444 111 111 1111111 222
lowQualScore : 000 3 0000 00000000 77 6 6 6 1 6 88 5555555 66666666666666666 55 6 99 8888888 77 66 66 77 5 77 2222 7777 0000 77 44444 8 222222222 6666666 444 8 66666666666666666666666 6 6 99 77 99 6 111111111 99 777 99999 99 1111111111 111 6 7 99 111 6 00 6 444444 8 8 7777777 2 33 0 00 0 3 6 0 666666 0 4444444444444444 3 55 555555555 33 77 0 22222222222222222222222222 3 11 8 8 0 11111 0 8 999 8 6 0 8 1 0 88 22 8 11 1 2 3 6 6 111111111 1111111111111111111111 33 99 8 666 3333333 0 6 3 3 6 33 2 2 2222222 111 6 2 8 0 0 0 88 11 888 1 0 3 333333 0 66666666 8 4444 99 6 6 6 7777 6 1 6 6 6 33 6 6 0000 000 0 4444 0 8 1 8 5 5 5 77777777777 0 8888888888888888888 000 000 8888888 111
lowQualScore : ... . .... ........ .. . . . . . .. ....... ................. .. . .. ....... .. .. .. .. . .. .... .... .... .. ..... . ......... ....... ... . ....................... . . .. .. .. . ......... .. ... ..... .. .......... ... . . .. ... . .. . ...... . . ....... . .. . .. . . . . ...... . ................ . .. ......... .. .. . .......................... . .. . . . ..... . . ... . . . . . . .. .. . .. . . . . . ......... ...................... .. .. . ... ....... . . . . . .. . . ....... ... . . . . . . .. .. ... . . . ...... . ........ . .... .. . . . .... . . . . . .. . . .... ... . .... . . . . . . . ........... . ................... ... ... ....... ...
lowQualScore : 888 2 0000 77777777 99 7 7 7 7 7 33 3333333 55555555555555555 88 7 22 6666666 99 99 99 99 7 99 1111 6666 4444 99 33333 0 000000000 0000000 444 0 22222222222222222222222 7 7 22 77 22 7 888888888 88 888 22222 22 3333333333 777 7 5 22 777 7 55 0 000000 0 0 0000000 5 88 0 22 0 2 5 0 555555 0 0000000000000000 3 33 000000000 22 55 2 00000000000000000000000000 2 00 0 0 8 66666 8 0 888 0 0 8 0 4 8 44 22 0 44 0 5 2 7 7 888888888 5555555555555555555555 33 22 0 444 8888888 0 5 2 2 5 88 5 5 5555555 000 5 5 0 8 8 8 88 88 888 0 8 2 444444 8 44444444 0 8888 22 7 7 7 8888 7 0 7 7 7 88 7 7 8888 888 8 8888 6 0 0 0 7 7 7 11111111111 1 3333333333333333333 000 000 6666666 444
consensus : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTCTTT-GCAAGGTACATTCTA---AGGAGA-CGCTGGGCGGGAAA---AAATTC-G---CAGC-TGGC---GTATTGGTGTT--AAACTAAC-AAA-TTATCAAC--G--TTTATGAAAT-CTATT-TGT-GACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGCA-TACAGCATT-GTAATCANGCGGGCGTCGAGGAACAA-GAAATTATGA-ACCGA-------A-TAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAGAAA-CAAAAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
Reference ( family-5395 ) : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTCTTT-GCAAGGTACATTCTA--GAGGAGA-TGCTG--CGGGAAA---AA-TCC-G---CAGC-TGGC---GTATTGGTGTT--AAACTAAC-AAA-TTATCAAC--G--TTTATGAAAT-CTATT-TGT-GACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGCA-TACAGCATT-GTAATCANGCGGGCGTCGAGGAACAA-GAAATTATGA-ACCGA-------A-TAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAGAAA-CAAAAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTT-------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGNT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
gi|1 : GTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGATA-TT--TGG--AA---ACAC-G---------AACGA-GGGGC--AGCGC-CCCG--AGTG-------GGTGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCGCTTGTA-TCATA-GCCACGCCC--C--------------------CAAGTT-GACTCT-TA--ACTT-GTGCAAA--G-TC-----T---G----CG--------------------------------TTCAT---TA-CAATTT--TTG---TTA-CA-TGGCGTATTTCGA-TGAC-TGTG-GT-A--C--G--AA-TGG-CA-GTT--GAAAAAGC-TGT--TT--AG-GGA-G----TA-GAC--TTGGAGCTATTTTTCC-TTATGTCTTTTACAAGGGAC-TTCTA--CAGAAG--CGCTGGGCGGAAAA---AAATCC-AGCACAGC--AGT---GTATTGGTGTT--AAACTAACCAAA-TTA-CAGCATG--TTTATGAAATTCTATT-TGTTGACA-TGGTGG-T-TGGACGGCAAATCGGGAAACGAATCTGTGCAATACAGCATTTGCAATCAAGCGG-CG-CGAGGAACAAAGAATTTATGACACCGA-------AATAGAG--AT-----------------GTCT--TTCGTTAGGTTTTAAA-CAACAAA---TT------GCGGTG-T-TGATGAA--ATTAAGA-ATATCCAGTGTTT-------AGAACCAAGA-GCGCATCAA-AA-AG-AAC--GTGC---TGATGATCAAT-CCTG-CTC--TGAAT-CGTCCAGATTCATGCAAAAGGAGC-CAAGATTACATCATTTAA----TTTGGTGGA--TTCT-ACGT-GC--T--C-G-AGTTCATGTA-G-GTA-TC--AGT-GTGATGATGATGTGA-CCAGATT---GCAGATTTAT--GTTTTA-TTTCT--TAAAGA---GA-C-GAT-----------A-TTGT--CGTTTTAT---A-----TGTATGTACTG---ATGTATTGTGAGATCATCCCCA--CTTTTTT
gi|10 : AGAAC-GAAT-GAC-----------ATTTGT--G--T---T---T-----TCTATT---TG---AGATA-------AT-ATCCCC---TTTTTagtattcaaccacaatttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|11 : -AGAAACAAGTGCT-ATAATAATCACT-CCTGTGTCCGCGAATCCGCCCAGATTCATGCATGTGAA-T-CAAGA-TACATCTTTTAA---TTTTGATGGA--TTCT-AGGA-GCTTT--C-G-AGTGCAT-TAGG-ATA-TCCAAGT-G-GATG----TTcagatcgtggaacgacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttt
gi|12 : ATTAGTTACCAC-GTTTATATT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GA---CA-TT--TTGGTAT---ACACAC---------A-CG--AGGACC-AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TTT----CTA-T-AGCA-A--AC--CAAT-----AGAAA
gi|13 : TATATTAGTTACC---ATA-----------------GTT--------TGCA--ATAGA-TACC-C-GATGACA-TT--TTG--AA---ATACAC---------A-CGA-GGGGC--AGCG-----------A-------AACAT--TTCAAA--ATG--T
gi|14 : TGTA-C-ATA-CGCACGCCC--CG-------------------CATGTTTGACTCT-AA--ACT--GTGCAAA--GTTC-----T---GAGTTCGAACAC-A-GTAGTA--GAA-------AATGTATTCAT---AA-CAAT-T--TAG---TTA-CAATaaatgatgcataccagtttatgaatatgaaaactgacagtga
gi|15 : AGAAC-GA-T-GAT-----------ATTTGT--GGTT---TTACA-----TGTATA---TG---AGATA-------ATCATCCCC---CCTTTTTTatca
gi|16 : AAGAAC-GA-T-GGC-----------ATTTGT--GGCT---T-----------TATG---TG---AGATA-------ATCATCACC---CTTTTTgtttaatgtatagaactacaatttgagagagagagagagag
gi|17 : GG--TTCTTACGTTGC-TTGCT-G-AGTTCAT-TAGACGTA-C---AGT-G--ACG----TTTGACCCAGACTTC-GCAGATGT-T--ATGTTATTTTCCGTTAAAGcggaggtatggaaaatctacaaattagagaagagagagag
gi|18 : tga------------CAAGTT-GACTCTAAA--ACTC-GTGCGAAACG-TCTGCATT---GATTCCGAG-AC-ATG-AGTG--GGA-------TA-GTAT
gi|19 : ccAA--ATG--TCA--TCGG-G--TAT----CTA-TTAGCA-A--AC--CAAT-----AGAAAAC-TATA---------ACGGTA-------ACTCACTTag
gi|2 : TGTATTAGTTACC---GTAGATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GTTGACA-TT--TTG--AT---ACAC-C---------A-TG--AGGGC--AGCGC-CCCG--AGTG-------GGTGT--T-CAAA--ATG--TCA--TCGG-G--TAT----AT--T-AGCA-A--AC--CAAT-----AGAAAAACTATA---------ACGGTA-------A-TCACTTGTAACCATA-GCCACGCCC--CAA--GTTGACTCTACGCCCCCAAGT--GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---G--TTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TG-CAATTT--TTG---TTA-CAATGTCGTATCT-GA-T-AC-TGTG-AA-A--CCGA--AACTGC-CA-GTTTGGAAAAAGC-TGT--TT--AGCGGA-G--GGTATATCCGTCGTAGCTTCTTTTCT-TAATTTCTTT-------TACA--------AGGAGA-TTCTA--CAGGAGA----------G---C-GC-TGG----GT---GGAATT--AAACTAAC-AAA-TTATCAGC--A--TTTATGAAAT-CTATT-TGT-GACAAGGATGGAT-TTGACGGCAATTCGGGAAACAAATCTGTGC--TACAGCATT-GTA-TCAGGTGGGTGTTGAGGAACAA-GAAATTATCA-ACCGA-------A-TAG-T--ATT------------TTTAATCTG-TTCGTCA--TTAAAAA-CAGAAGAACATTCAATTTG-GATGATATGATGAA--ATTAAGAGATATCCAGTGTTTTACTTTTAGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCTGTGAATCCGTCCAGATTTATGCATAAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACAT-AT-TT--TAG-AGTGCAT-TAGG-GTA-TCCAAGT-A-GATG----TTTGACTCAGACTTCGGCAGATGT-T--GTTTTA-TATCCG-TAAAGAAC-AA-T-GAT-----------ATCTGT--GGGT---TA--A-----TGTATG---TG---AGATA-------ATCATCAAC---CTTTTTTTT
gi|20 : tTGTATTAGTTACC---AGATATTCT----TCTATTGGTT--------TGCT--ATA
gi|3 : aTTCAT---TAACAAACT--TTG---TTAGCAATGGCGT-TAT-AACT-AC-TGTGTAA-ATTCCGA--AA-TGGTCA-GTTTG---AAAGC-TGTGTTC--AG-GCATGTTG-TA-ATCTG---GAGCTATTTTCCTATATTTTCTTT-GCAAGGTACATTCTAACGAGGAGA-TGCTG--GCGGAAACATAA-TTCAG---CAGCATGGT---GTATTGGTGTTTAGAACTAAC-AAAATTATACAT--G--TTTATGAAAT-CTATTGTCT-GACATGGGTGGAT-TGGACGCAAATT--GGAAATGAATC-GTGC--TACAGC-TT-GTA-TCAGTCCGTCGTCGAGGAACAA-GAATTAATGT-ACCGC-------A-TAG-G--A------------------ATCT---TCGATA--TTTGAAAACAAAAGAA--TT------G-G-TGATAT-ATTGA--ATTAAGAGATATCCAGTGTTT-------AGAGCAAA-A-GCGC-TCAAGAA-AGAAACAAG-GCT-ATA--AATCA-------TCTCCGC---TCCGTCCAGAATCATGCACGA------------------TTTTAAATTTTTTGGTGGA--TTCT-ACGT-GC-TTG-C-GTAGTTCAT-TAGG-G-A-TC--AGTGG-GATGT---TTTGACCCCAAAGTCGGCAGA----------------TCCG-TAAAGAAC-GA-TAGGTAATATTATTGAATTTGTTAGTTT---T---ATTGATTGTACA---TGCATAGATA-------A-CACCCCCCAGCTTTCTTTTa
gi|4 : agttgtaactcatgcaattcagagGGCGGCGAGGAACAA-GAAATTATGA-ACCGACATACATG-TAG-GTCATCCTTCGATTATTTATAAATCTG-TTCGTCA--TTAAAAA-CAAAAGAACAT-------G-GGTGATATAATGAATAAATAA-AGATATCCAGTGTTTT------AGAGCCAA-AAGCGCGTCAAGAATAGAAACAAGTGCTCATAAATATCACTACCAGTCTCCG--------TCCAGATTC-TGCAT-ATGA-TGCAAGA-TACATCTTTTAA---TTTTGGTGGAATTTTT-ACGT-GC-TT--C-G-AGTGCAT-TAGG-GTAATCCAGGT-G-G-TG----TTTAACCCAGACTT-GGAAGATGT-TAGGTTTTA-TTTCCG-TAAAGAACAGA-T-GAT-----------AT------------------------GTATG---TG---AAATA-------ATCATCCCCC--CTTTTTTTTttagtcttgaagacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggagaagagatgagaagatgtatg
gi|5 : ATTTTGTCGTCTGTTGGTTGCAGGAACTACTTCATAGAATATC-CTGATGGCA-TTGTTCG--AACCAACAC-A---------A-CATTGGGGC--AGCGC-CCCG--AGTGCATGTATGGT-T--TTAAAA--ATGCATCAAATCGGTGATTATGCAACTAGT-GGCA-G--ATGACAATTATGTAAAAAAA-TATATAATACCATGCGATATTCAACTACTCATTTGTA-C-ATATGCCAGACCCTCCGTGTGTTG------------T--TTT-GA---T-AAGTACTCCGTGCAAA--G-TC-----CATAGAGTTCTGA-ACGA-G-AGTATGGAA-------AT-GTATTCATCCGTA-CGATGTAGTTGACATTA-C--TGGCGTTTAC-AT-T-ACTTGTG-AATA--CCGATGAA-TGA-CATGTTTGAAAGAAGCTTGT--TCTTAG-GGtttaatatgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgt
gi|6 : agAGGAGAACGCTGGGCGGAAAA---AAATTC------AGC-TAACAATGCATTGGTGTT--AAACTAAC-AAA-TTATCAAC--A--TTTGTGAAAT-TTATA-TGT-GACAAGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGC--TACAGCAAT-GT-ATCACGCGGGCGTCGAGGAACAA-GAAATTATGA-ACCGA-------A-TAG-G---TC------------ATAAATCTG-TTCGTCA--TTAGAAA-CAAAAGAACATT------t
gi|7 : acTG-------GGTGT--TTCGAA--ATG--TCA--TCGG-G--TAT----CTA-A-AGCA-TTTAC--CAAT-----AGAAAAA-TATA---------ACAGTA-------GCTCACTTGTA-CTATA-GCCACGCCC--C---------------------AAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAAATAGATCTA-GTATTCAT---TT-CAAAAT--TTG---TTG-C-ATGGCGTATC--AA-T-AC-T
gi|8 : GTT--TAACTAAC-AAA-TTATCAAC--AATTTTGTG-AAT-TTA---TAT-GACAAGGGTGGATGTCCCCGACAGTTCGGGAAACGAATCTGTGCA-CACAGCAAT-GTAATCACGCGGGCGTCGAGGAACAA-G-AATTATGA-ACCGA-------A-TAG-G---TC------------ATAAATCTGTTTCGTCA--TTAGAA
gi|9 : ggTATTATTTACCCTAGTGTGTTTTGA--CTTATAGG----------------A-AGA-TACCTC-ACCGACAGTTCCTTG--GT---ATAC-TTACTATTCAA-CG--AAGGCCCAACGCTCCCGTTAGTG-------TCCGTCTTTCAAACCATG--TCA--TCGG-G--TTT----CTC-T-TACGCA--AC--CAAT-----AGAAAA
Alignments
lowQualScore : 222 2222 22222222 11 1111111 44444444444444444 11 1111111 1111 1111 11111 333333333 2222222 111 99999999999999999999999 222222222 3333333333 111 111 11 111111 1111111 11 1 11 1 1 111111 1 4444444444444444 1 1 11 1 222 2 77777777777777777777777777 11 22222 22 111 11 222222222 6666666666666666666666 333333333 11 1 222222 111 111111 11111111 1111 1111 11 2222 111 1111 22222222222 4444444444444444444 111 111 1111111 222
lowQualScore : 000 3 0000 00000000 77 6 6 6 1 6 88 5555555 66666666666666666 55 6 99 8888888 77 66 66 77 5 77 2222 7777 0000 77 44444 8 222222222 6666666 444 8 66666666666666666666666 6 6 99 77 99 6 111111111 99 777 99999 99 1111111111 111 6 7 99 111 6 00 6 444444 8 8 7777777 2 33 0 00 0 3 6 0 666666 0 4444444444444444 3 3 44 5 7 777 0 2 6 99999999999999999999999999 0 11 8 8 0 11111 0 8 999 8 0 0 8 1 0 88 000 11 1 5 3 6 6 333333333 5555555555555555555555 99 99 6 8 5 666666666 3 3 6 33 2 2 5 888888 111 6 2 8 0 0 0 88 11 888 1 0 3 333333 0 66666666 8 4444 99 6 6 6 7777 6 1 6 6 6 33 6 6 0000 000 0 4444 0 8 1 8 5 5 5 77777777777 0 6666666666666666666 000 000 8888888 111
lowQualScore : ... . .... ........ .. . . . . . .. ....... ................. .. . .. ....... .. .. .. .. . .. .... .... .... .. ..... . ......... ....... ... . ....................... . . .. .. .. . ......... .. ... ..... .. .......... ... . . .. ... . .. . ...... . . ....... . .. . .. . . . . ...... . ................ . . .. . . ... . . . .......................... . .. . . . ..... . . ... . . . . . . .. ... .. . . . . . ......... ...................... .. .. . . . ......... . . . .. . . . ...... ... . . . . . . .. .. ... . . . ...... . ........ . .... .. . . . .... . . . . . .. . . .... ... . .... . . . . . . . ........... . ................... ... ... ....... ...
lowQualScore : 888 2 0000 77777777 99 7 7 7 7 7 33 3333333 55555555555555555 88 7 22 6666666 99 99 99 99 7 99 1111 6666 4444 99 33333 0 000000000 0000000 444 0 22222222222222222222222 7 7 22 77 22 7 888888888 88 888 22222 22 3333333333 777 7 5 22 777 7 55 0 000000 0 0 0000000 5 88 0 22 0 2 5 0 555555 0 0000000000000000 3 3 00 3 3 555 0 5 0 00000000000000000000000000 8 00 0 0 8 66666 8 0 888 0 8 8 0 4 8 44 222 44 0 0 2 7 7 333333333 5555555555555555555555 22 22 7 0 6 333333333 2 2 5 88 5 5 5 888888 000 5 5 0 8 8 8 88 88 888 0 8 2 444444 8 44444444 0 8888 22 7 7 7 8888 7 0 7 7 7 88 7 7 8888 888 8 8888 6 0 0 0 7 7 7 11111111111 1 6666666666666666666 000 000 6666666 444
consensus : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAAGG-ACATTCTA---AGGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-C-AAATTATCAAC--G--TTTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC-ATACAGCA-TTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
Reference ( family-5395 ) : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-GCAAGGTACATTCTA---AGGAGA-CGCTGGGCGGGAAAA-AATT---C-GCAGC-TGGC---GTATTGGTGTT--AAACTAA-C-AAATTATCAAC--G--TTTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC-ATACAGCA-TTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
gi|1 : GTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGATA-TT--TGG--AA---ACAC-G---------AACGA-GGGGC--AGCGC-CCCG--AGTG-------GGTGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCGCTTGTA-TCATA-GCCACGCCC--C--------------------CAAGTT-GACTCT-TA--ACTT-GTGCAAA--G-TC-----T---G----CG--------------------------------TTCAT---TA-CAATTT--TTG---TTA-CA-TGGCGTATTTCGA-TGAC-TGTG-GT-A--C--G--AA-TGG-CA-GTT--GAAAAAGC-TGT--TT--AG-GGA-G----TA-GAC--TTGGAGCTATTTTTCC-TTATGTCTTTT-ACAAGGGAC-TTCTA---CAGAAG-CGCTGGGCGGAAAAA-AATCCAGC-ACAGC--AGT---GTATTGGTGTT--AAACTAACC-AAATTA-CAGCATG--TTTATGAAATTCTATT-TGTTGAC-ATGGTGG-T-TGGACGGCAAATCGGGAAACGAATCTGTGCAATACAGCATTTGCAATCAAGC-GGCG-CGAGGAACAAAGAATTTATGACACCGAA-------ATAGAG--AT-----------------GTCT--TTCGTTAGGTTTT-AAACAACAA----ATT------GCGGTG-T-TGATGAA--ATTAAGA-ATATCCAGTG-TTT------AGAACCAAGA-GCGCATCAA-AA-AG-AAC--GTGC---TGATGATCAAT-CCTG-CTC--TGAAT-CGTCCAGATTCATGCAAAAGGAGC-CAAGATTACATCATTTAA----TTTGGTGGA--TTCT-ACGT-GC--T--C-G-AGTTCATGTA-G-GTA-TC--AGT-GTGATGATGATGTGA-CCAGATT---GCAGATTTAT--GTTTTA-TTTCT--TAAAGA---GA-C-GAT-----------A-TTGT--CGTTTTAT---A-----TGTATGTACTG---ATGTATTGTGAGATCATCCCCA--CTTTTTT
gi|10 : AGAAC-GAAT-GAC-----------ATTTGT---GTT---T---------TCTATT---TG---AGATA-------AT-ATCCCC---TTTTTagtattcaaccacaatttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|11 : -AGAAACAAGTGCT-ATAATAATCACT-CCTGTGTCCGCGAATCCGCCCAGATTCATGCATGTGAA-T-CAAGA-TACATCTTTTAA---TTTTGATGGA--TTCT-AGGA-GCTTT--C-G-AGTGCAT-TAGG-ATA-TCCAAGT-G-GATG----TTcagatcgtggaacgacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttt
gi|12 : ATTAGTTACCAC-GTTTATATT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GA---CA-TT--TTGGTAT---ACACAC---------A-CG--AGGACC-AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TTT----CTA-T-AGCA-A--AC--CAAT-----AGAAA
gi|13 : TATATTAGTTACC---ATA-----------------GTT--------TGCA--ATAGA-TACC-C-GATGACA-TT--TTG--AA---ATACAC---------A-CGA-GGGGC--AGCG-----------A-------AACAT--TTCAAA--ATG--T
gi|14 : TGTA-C-ATA-CGCACGCCC--CG-------------------CATGTTTGACTCT-AA--ACT--GTGCAAA--GTTC-----T---GAGTTCGAACAC-A-GTAGTA--GAA-------AATGTATTCAT---AA-CAAT-T--TAG---TTA-CAATaaatgatgcataccagtttatgaatatgaaaactgacagtga
gi|15 : AGAAC-GA-T-GAT-----------ATTTGT--GGTT---TTACA-----TGTATA---TG---AGATA-------ATCATCCCC---CCTTTTTTatca
gi|16 : AAGAAC-GA-T-GGC-----------ATTTGT--GGCT---T-----------TATG---TG---AGATA-------ATCATCACC---CTTTTTgtttaatgtatagaactacaatttgagagagagagagagag
gi|17 : GG--TTCTTACGTTGC-TTGCT-G-AGTTCAT-TAGACGTA-C---AGT-G--ACG----TTTGACCCAGACTTC-GCAGATGT-T--ATGTTATTTTCCGTTAAAGcggaggtatggaaaatctacaaattagagaagagagagag
gi|18 : tga------------CAAGTT-GACTCTAAA--ACTC-GTGCGAAACG-TCTGCATT---GATTCCGAG-AC-ATG-AGTG--GGA-------TA-GTAT
gi|19 : ccAA--ATG--TCA--TCGG-G--TAT----CTA-TTAGCA-A--AC--CAAT-----AGAAAAC-TATA---------ACGGTA-------ACTCACTTag
gi|2 : TGTATTAGTTACC---GTAGATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GTTGACA-TT--TTG--AT---ACAC-C---------A-TG--AGGGC--AGCGC-CCCG--AGTG-------GGTGT--T-CAAA--ATG--TCA--TCGG-G--TAT----AT--T-AGCA-A--AC--CAAT-----AGAAAAACTATA---------ACGGTA-------A-TCACTTGTAACCATA-GCCACGCCC--CAA--GTTGACTCTACGCCCCCAAGT--GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---G--TTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TG-CAATTT--TTG---TTA-CAATGTCGTATCT-GA-T-AC-TGTG-AA-A--CCGA--AACTGC-CA-GTTTGGAAAAAGC-TGT--TT--AGCGGA-G--GGTATATCCGTCGTAGCTTCTTTTCT-TAATTTC-TTTTACAAGG-AGATTCTAC--AGGAGAGCGCTGGGTGGAA-----------------------------------TT--AAACTAA-C-AAATTATCAGC--A--TTTATGAAA-TCTATT-TG-TGACAAGGATGGAT-TTGACGGCAATTCGGGAAACAAATCTGTGC--TACAGCA-TTGTA-TCAGGTGGGTGTTGAGGAAC-AAGAAATTATCA-ACCG-A-------ATAG-T--ATT------------TTTAATCTG-TTCGTCA--TTAA-AAACAG-AAGAACATTCAATTTG-GATGATATGATGAA--ATTAAGAGATATCCAGTGTTTTACTTTTAGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCTGTGAATCCGTCCAGATTTATGCATAAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACAT-AT-TT--TAG-AGTGCAT-TAGG-GTA-TCCAAGT-A-GATG----TTTGACTCAGACTTCGGCAGATGT-T--GTTTTA-TATCCG-TAAAGAAC-AA-T-GAT-----------ATCTGT--GGGT---TA--A-----TGTATG---TG---AGATA-------ATCATCAAC---CTTTTTTTT
gi|20 : tTGTATTAGTTACC---AGATATTCT----TCTATTGGTT--------TGCT--ATA
gi|3 : aTTCAT---TAACAAACT--TTG---TTAGCAATGGCGT-TAT-AACT-AC-TGTGTAA-ATTCCGA--AA-TGGTCA-GTTTG---AAAGC-TGTGTTC--AG-GCATGTTG-TA-ATCTG---GAGCTATTTTCCTATATTTTC-TTT-GCAAGGTACATTCTAACGAGGAGA-TGCT-GGCGGAAACATAATT---CAGCAGCATGGT---GTATTGGTGTTTAGAACTAA-CAAAATTATACAT--G--TTTATGAAA-TCTATTGTC-TGACATGGGTGGAT-TGGACGCAAATT--GGAAATGAATC-GTGC--TACAGC--TTGT-ATCAGTCCGTCGTCGAGGAAC-AAGAATTAATGT-ACCG-C-------ATAG-G--------------------AATC---TTCGATA--TTTGAAAACAA-AAGA--ATT--------GGTGATAT-ATTGA--ATTAAGAGATATCCAGTG-TTT------AGAGCAAA-A-GCGC-TCAAGAA-AGAAACAAG-GCT-ATA--AATCA-------TCTCCGC---TCCGTCCAGAATCATGCACGA------------------TTTTAAATTTTTTGGTGGA--TTCT-ACGT-GC-TTG-C-GTAGTTCAT-TAGG-G-A-TC--AGTGG-GATGT---TTTGACCCCAAAGTCGGCAGA----------------TCCG-TAAAGAAC-GA-TAGGTAATATTATTGAATTTGTTAGTTT---T---ATTGATTGTACA---TGCATAGATA-------A-CACCCCCCAGCTTTCTTTTa
gi|4 : agttgtaactcatgcaattcagagGGCGGCGAGGAAC-AAGAAATTATGA-ACCG-ACATACATGTAG-GTCATCCTTCGATTATTTATAAATCTG-TTCGTCA--TTAA-AAACAA-AAGAACAT-------G-GGTGATATAATGAATAAATAA-AGATATCCAGTGTTTT------AGAGCCAA-AAGCGCGTCAAGAATAGAAACAAGTGCTCATAAATATCACTACCAGTCTCCG--------TCCAGATTC-TGCAT-ATGA-TGCAAGA-TACATCTTTTAA---TTTTGGTGGAATTTTT-ACGT-GC-TT--C-G-AGTGCAT-TAGG-GTAATCCAGGT-G-G-TG----TTTAACCCAGACTT-GGAAGATGT-TAGGTTTTA-TTTCCG-TAAAGAACAGA-T-GAT-----------AT------------------------GTATG---TG---AAATA-------ATCATCCCCC--CTTTTTTTTttagtcttgaagacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggagaagagatgagaagatgtatg
gi|5 : ATTTTGTCGTCTGTTGGTTGCAGGAACTACTTCATAGAATATC-CTGATGGCA-TTGTTCG--AACCAACAC-A---------A-CATTGGGGC--AGCGC-CCCG--AGTGCATGTATGGT-T--TTAAAA--ATGCATCAAATCGGTGATTATGCAACTAGT-GGCA-G--ATGACAATTATGTAAAAAAA-TATATAATACCATGCGATATTCAACTACTCATTTGTA-C-ATATGCCAGACCCTCCGTGTGTTG------------T--TTT-GA---T-AAGTACTCCGTGCAAA--G-TC-----CATAGAGTTCTGA-ACGA-G-AGTATGGAA-------AT-GTATTCATCCGTA-CGATGTAGTTGACATTA-C--TGGCGTTTAC-AT-T-ACTTGTG-AATA--CCGATGAA-TGA-CATGTTTGAAAGAAGCTTGT--TCTTAG-GGtttaatatgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgt
gi|6 : ag---AGGAGAACGCTGGGCGGAAAAA-AATT---C---AGC-TAACAATGCATTGGTGTT--AAACTAA-C-AAATTATCAAC--A--TTTGTGAAA-TTTATA-TG-TGACAAGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGC--TACAGCA-ATGT-ATCACGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G---TC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------t
gi|7 : acTG-------GGTGT--TTCGAA--ATG--TCA--TCGG-G--TAT----CTA-A-AGCA-TTTAC--CAAT-----AGAAAAA-TATA---------ACAGTA-------GCTCACTTGTA-CTATA-GCCACGCCC--C---------------------AAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAAATAGATCTA-GTATTCAT---TT-CAAAAT--TTG---TTG-C-ATGGCGTATC--AA-T-AC-T
gi|8 : GTT--TAACTAA-C-AAATTATCAAC--AATTTTGTG-AA-TTTA---TA-TGACAAGGGTGGATGTCCCCGACAGTTCGGGAAACGAATCTGTGC-ACACAGCA-ATGTAATCACGCGGGCGTCGAGGAAC-AAG-AATTATGA-ACCG-A-------ATAG-G---TC------------ATAAATCTGTTTCGTCA--TTAG-AA
gi|9 : ggTATTATTTACCCTAGTGTGTTTTGA--CTTATAGG----------------A-AGA-TACCTC-ACCGACAGTTCCTTG--GT---ATAC-TTACTATTCAA-CG--AAGGCCCAACGCTCCCGTTAGTG-------TCCGTCTTTCAAACCATG--TCA--TCGG-G--TTT----CTC-T-TACGCA--AC--CAAT-----AGAAAA
Alignments
lowQualScore : 222 2222 22222222 11 1111111 44444444444444444 11 1111111 1111 1111 11111 333333333 2222222 111 99999999999999999999999 222222222 3333333333 111 111 11 111111 1111111 11 1 11 1 1 111111 1 4444444444444444 1 1 1 1 1 22222 77777777777777777777777777 11 22222 22 111 11 222222222 6666666666666666666666 333333333 11 1 222222 111 111111 11111111 1111 1111 11 2222 111 1111 22222222222 4444444444444444444 111 111 1111111 222
lowQualScore : 000 3 0000 00000000 77 6 6 6 1 6 88 5555555 66666666666666666 55 6 99 8888888 77 66 66 77 5 77 2222 7777 0000 77 44444 8 222222222 6666666 444 8 66666666666666666666666 6 6 99 77 99 6 111111111 99 777 99999 99 1111111111 111 6 7 99 111 6 00 6 444444 8 8 7777777 2 33 0 00 0 3 6 0 666666 0 4444444444444444 3 3 3 3 3 7 44444 2 6 2 55555555555555555555555555 0 11 8 8 0 11111 0 8 999 8 0 0 8 1 0 88 000 11 1 5 3 6 6 333333333 5555555555555555555555 99 99 6 8 5 666666666 3 3 6 33 2 2 5 888888 111 6 2 8 0 0 0 88 11 888 1 0 3 333333 0 66666666 8 4444 99 6 6 6 7777 6 1 6 6 6 33 6 6 0000 000 0 4444 0 8 1 8 5 5 5 77777777777 0 6666666666666666666 000 000 8888888 111
lowQualScore : ... . .... ........ .. . . . . . .. ....... ................. .. . .. ....... .. .. .. .. . .. .... .... .... .. ..... . ......... ....... ... . ....................... . . .. .. .. . ......... .. ... ..... .. .......... ... . . .. ... . .. . ...... . . ....... . .. . .. . . . . ...... . ................ . . . . . . ..... . . . .......................... . .. . . . ..... . . ... . . . . . . .. ... .. . . . . . ......... ...................... .. .. . . . ......... . . . .. . . . ...... ... . . . . . . .. .. ... . . . ...... . ........ . .... .. . . . .... . . . . . .. . . .... ... . .... . . . . . . . ........... . ................... ... ... ....... ...
lowQualScore : 888 2 0000 77777777 99 7 7 7 7 7 33 3333333 55555555555555555 88 7 22 6666666 99 99 99 99 7 99 1111 6666 4444 99 33333 0 000000000 0000000 444 0 22222222222222222222222 7 7 22 77 22 7 888888888 88 888 22222 22 3333333333 777 7 5 22 777 7 55 0 000000 0 0 0000000 5 88 0 22 0 2 5 0 555555 0 0000000000000000 3 3 3 3 3 3 55555 5 5 5 55555555555555555555555555 8 00 0 0 8 66666 8 0 888 0 8 8 0 4 8 44 222 44 0 0 2 7 7 333333333 5555555555555555555555 22 22 7 0 6 333333333 2 2 5 88 5 5 5 888888 000 5 5 0 8 8 8 88 88 888 0 8 2 444444 8 44444444 0 8888 22 7 7 7 8888 7 0 7 7 7 88 7 7 8888 888 8 8888 6 0 0 0 7 7 7 11111111111 1 6666666666666666666 000 000 6666666 444
consensus : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAA-GG-ACATTCTA-A---GGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-CAAA-TTATCAAC--G--TTTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC-ATACAGCA-TTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
Reference ( family-5395 ) : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAA-GG-ACATTCTA-A---GGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-CAAA-TTATCAAC--G--TTTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC-ATACAGCA-TTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
gi|1 : GTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGATA-TT--TGG--AA---ACAC-G---------AACGA-GGGGC--AGCGC-CCCG--AGTG-------GGTGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCGCTTGTA-TCATA-GCCACGCCC--C--------------------CAAGTT-GACTCT-TA--ACTT-GTGCAAA--G-TC-----T---G----CG--------------------------------TTCAT---TA-CAATTT--TTG---TTA-CA-TGGCGTATTTCGA-TGAC-TGTG-GT-A--C--G--AA-TGG-CA-GTT--GAAAAAGC-TGT--TT--AG-GGA-G----TA-GAC--TTGGAGCTATTTTTCC-TTATGTCTTTT-ACAAGGG-AC-TTCTA-C---AGA-AGCGCTGGGCGGAAAAA-AATCCAGC-ACAGC--AGT---GTATTGGTGTT--AAACTAACCAAA-TTA-CAGCATG--TTTATGAAATTCTATT-TGTTGAC-ATGGTGG-T-TGGACGGCAAATCGGGAAACGAATCTGTGCAATACAGCATTTGCAATCAAGC-GGCG-CGAGGAACAAAGAATTTATGACACCGAA-------ATAGAG--AT-----------------GTCT--TTCGTTAGGTTTT-AAACAACAA----ATT------GCGGTG-T-TGATGAA--ATTAAGA-ATATCCAGTG-TTT------AGAACCAAGA-GCGCATCAA-AA-AG-AAC--GTGC---TGATGATCAAT-CCTG-CTC--TGAAT-CGTCCAGATTCATGCAAAAGGAGC-CAAGATTACATCATTTAA----TTTGGTGGA--TTCT-ACGT-GC--T--C-G-AGTTCATGTA-G-GTA-TC--AGT-GTGATGATGATGTGA-CCAGATT---GCAGATTTAT--GTTTTA-TTTCT--TAAAGA---GA-C-GAT-----------A-TTGT--CGTTTTAT---A-----TGTATGTACTG---ATGTATTGTGAGATCATCCCCA--CTTTTTT
gi|10 : AGAAC-GAAT-GAC-----------ATTTGT---GTT---T---------TCTATT---TG---AGATA-------AT-ATCCCC---TTTTTagtattcaaccacaatttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|11 : -AGAAACAAGTGCT-ATAATAATCACT-CCTGTGTCCGCGAATCCGCCCAGATTCATGCATGTGAA-T-CAAGA-TACATCTTTTAA---TTTTGATGGA--TTCT-AGGA-GCTTT--C-G-AGTGCAT-TAGG-ATA-TCCAAGT-G-GATG----TTcagatcgtggaacgacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttt
gi|12 : ATTAGTTACCAC-GTTTATATT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GA---CA-TT--TTGGTAT---ACACAC---------A-CG--AGGACC-AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TTT----CTA-T-AGCA-A--AC--CAAT-----AGAAA
gi|13 : TATATTAGTTACC---ATA-----------------GTT--------TGCA--ATAGA-TACC-C-GATGACA-TT--TTG--AA---ATACAC---------A-CGA-GGGGC--AGCG-----------A-------AACAT--TTCAAA--ATG--T
gi|14 : TGTA-C-ATA-CGCACGCCC--CG-------------------CATGTTTGACTCT-AA--ACT--GTGCAAA--GTTC-----T---GAGTTCGAACAC-A-GTAGTA--GAA-------AATGTATTCAT---AA-CAAT-T--TAG---TTA-CAATaaatgatgcataccagtttatgaatatgaaaactgacagtga
gi|15 : AGAAC-GA-T-GAT-----------ATTTGT--GGTT---TTACA-----TGTATA---TG---AGATA-------ATCATCCCC---CCTTTTTTatca
gi|16 : AAGAAC-GA-T-GGC-----------ATTTGT--GGCT---T-----------TATG---TG---AGATA-------ATCATCACC---CTTTTTgtttaatgtatagaactacaatttgagagagagagagagag
gi|17 : GG--TTCTTACGTTGC-TTGCT-G-AGTTCAT-TAGACGTA-C---AGT-G--ACG----TTTGACCCAGACTTC-GCAGATGT-T--ATGTTATTTTCCGTTAAAGcggaggtatggaaaatctacaaattagagaagagagagag
gi|18 : tga------------CAAGTT-GACTCTAAA--ACTC-GTGCGAAACG-TCTGCATT---GATTCCGAG-AC-ATG-AGTG--GGA-------TA-GTAT
gi|19 : ccAA--ATG--TCA--TCGG-G--TAT----CTA-TTAGCA-A--AC--CAAT-----AGAAAAC-TATA---------ACGGTA-------ACTCACTTag
gi|2 : TGTATTAGTTACC---GTAGATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GTTGACA-TT--TTG--AT---ACAC-C---------A-TG--AGGGC--AGCGC-CCCG--AGTG-------GGTGT--T-CAAA--ATG--TCA--TCGG-G--TAT----AT--T-AGCA-A--AC--CAAT-----AGAAAAACTATA---------ACGGTA-------A-TCACTTGTAACCATA-GCCACGCCC--CAA--GTTGACTCTACGCCCCCAAGT--GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---G--TTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TG-CAATTT--TTG---TTA-CAATGTCGTATCT-GA-T-AC-TGTG-AA-A--CCGA--AACTGC-CA-GTTTGGAAAAAGC-TGT--TT--AGCGGA-G--GGTATATCCGTCGTAGCTTCTTTTCT-TAATTTC-TTTTACAA-GG-AGATTCTACA---GGAGAGCGCTGGGTGGAA-----------------------------------TT--AAACTAA-CAAA-TTATCAGC--A--TTTATGAAA-TCTATT-TG-TGACAAGGATGGAT-TTGACGGCAATTCGGGAAACAAATCTGTGC--TACAGCA-TTGTA-TCAGGTGGGTGTTGAGGAAC-AAGAAATTATCA-ACCG-A-------ATAG-T--ATT------------TTTAATCTG-TTCGTCA--TTAA-AAACAG-AAGAACATTCAATTTG-GATGATATGATGAA--ATTAAGAGATATCCAGTGTTTTACTTTTAGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCTGTGAATCCGTCCAGATTTATGCATAAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACAT-AT-TT--TAG-AGTGCAT-TAGG-GTA-TCCAAGT-A-GATG----TTTGACTCAGACTTCGGCAGATGT-T--GTTTTA-TATCCG-TAAAGAAC-AA-T-GAT-----------ATCTGT--GGGT---TA--A-----TGTATG---TG---AGATA-------ATCATCAAC---CTTTTTTTT
gi|20 : tTGTATTAGTTACC---AGATATTCT----TCTATTGGTT--------TGCT--ATA
gi|3 : aTTCAT---TAACAAACT--TTG---TTAGCAATGGCGT-TAT-AACT-AC-TGTGTAA-ATTCCGA--AA-TGGTCA-GTTTG---AAAGC-TGTGTTC--AG-GCATGTTG-TA-ATCTG---GAGCTATTTTCCTATATTTTC-TTT-GCAA-GGTACATTCTA-ACGAGGAGA-TGCTGG-CGGAAACATAATT---CAGCAGCATGGT---GTATTGGTGTTTAGAACTAA-CAAAATTATACAT--G--TTTATGAAA-TCTATTGTC-TGACATGGGTGGAT-TGGACGCAAATT--GGAAATGAATC-GTGC--TACAGC--TTGTA-TCAGTCCGTCGTCGAGGAAC-AAGAATTAATGT-ACCG-C-------ATAG-G--------------------AATC---TTCGATA--TTTGAAAACAA-AAGA--ATT--------GGTGATAT-ATTGA--ATTAAGAGATATCCAGTG-TTT------AGAGCAAA-A-GCGC-TCAAGAA-AGAAACAAG-GCT-ATA--AATCA-------TCTCCGC---TCCGTCCAGAATCATGCACGA------------------TTTTAAATTTTTTGGTGGA--TTCT-ACGT-GC-TTG-C-GTAGTTCAT-TAGG-G-A-TC--AGTGG-GATGT---TTTGACCCCAAAGTCGGCAGA----------------TCCG-TAAAGAAC-GA-TAGGTAATATTATTGAATTTGTTAGTTT---T---ATTGATTGTACA---TGCATAGATA-------A-CACCCCCCAGCTTTCTTTTa
gi|4 : agttgtaactcatgcaattcagagGGCGGCGAGGAAC-AAGAAATTATGA-ACCG-ACATACATGTAG-GTCATCCTTCGATTATTTATAAATCTG-TTCGTCA--TTAA-AAACAA-AAGAACAT-------G-GGTGATATAATGAATAAATAA-AGATATCCAGTGTTTT------AGAGCCAA-AAGCGCGTCAAGAATAGAAACAAGTGCTCATAAATATCACTACCAGTCTCCG--------TCCAGATTC-TGCAT-ATGA-TGCAAGA-TACATCTTTTAA---TTTTGGTGGAATTTTT-ACGT-GC-TT--C-G-AGTGCAT-TAGG-GTAATCCAGGT-G-G-TG----TTTAACCCAGACTT-GGAAGATGT-TAGGTTTTA-TTTCCG-TAAAGAACAGA-T-GAT-----------AT------------------------GTATG---TG---AAATA-------ATCATCCCCC--CTTTTTTTTttagtcttgaagacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggagaagagatgagaagatgtatg
gi|5 : ATTTTGTCGTCTGTTGGTTGCAGGAACTACTTCATAGAATATC-CTGATGGCA-TTGTTCG--AACCAACAC-A---------A-CATTGGGGC--AGCGC-CCCG--AGTGCATGTATGGT-T--TTAAAA--ATGCATCAAATCGGTGATTATGCAACTAGT-GGCA-G--ATGACAATTATGTAAAAAAA-TATATAATACCATGCGATATTCAACTACTCATTTGTA-C-ATATGCCAGACCCTCCGTGTGTTG------------T--TTT-GA---T-AAGTACTCCGTGCAAA--G-TC-----CATAGAGTTCTGA-ACGA-G-AGTATGGAA-------AT-GTATTCATCCGTA-CGATGTAGTTGACATTA-C--TGGCGTTTAC-AT-T-ACTTGTG-AATA--CCGATGAA-TGA-CATGTTTGAAAGAAGCTTGT--TCTTAG-GGtttaatatgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgt
gi|6 : ag-A---GGAGAACGCTGGGCGGAAAAA-AATT---C---AGC-TAACAATGCATTGGTGTT--AAACTAA-CAAA-TTATCAAC--A--TTTGTGAAA-TTTATA-TG-TGACAAGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGC--TACAGCA-ATGT-ATCACGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G---TC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------t
gi|7 : acTG-------GGTGT--TTCGAA--ATG--TCA--TCGG-G--TAT----CTA-A-AGCA-TTTAC--CAAT-----AGAAAAA-TATA---------ACAGTA-------GCTCACTTGTA-CTATA-GCCACGCCC--C---------------------AAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAAATAGATCTA-GTATTCAT---TT-CAAAAT--TTG---TTG-C-ATGGCGTATC--AA-T-AC-T
gi|8 : GTT--TAACTAA-CAAA-TTATCAAC--AATTTTGTG-AA-TTTA---TA-TGACAAGGGTGGATGTCCCCGACAGTTCGGGAAACGAATCTGTGC-ACACAGCA-ATGTAATCACGCGGGCGTCGAGGAAC-AAG-AATTATGA-ACCG-A-------ATAG-G---TC------------ATAAATCTGTTTCGTCA--TTAG-AA
gi|9 : ggTATTATTTACCCTAGTGTGTTTTGA--CTTATAGG----------------A-AGA-TACCTC-ACCGACAGTTCCTTG--GT---ATAC-TTACTATTCAA-CG--AAGGCCCAACGCTCCCGTTAGTG-------TCCGTCTTTCAAACCATG--TCA--TCGG-G--TTT----CTC-T-TACGCA--AC--CAAT-----AGAAAA
Alignments
lowQualScore : 222 2222 22222222 11 1111111 44444444444444444 11 1111111 1111 1111 11111 333333333 2222222 111 99999999999999999999999 222222222 3333333333 111 111 11 111111 1111111 11 1 11 1 1 111111 1 4444444444444444 1 1 1 1 1 22222 77777777777777777777777777 11 22222 22 111 11 222222222 6666666666666666666666 333333333 11 1 222222 111 111111 11111111 1111 1111 11 2222 111 1111 22222222222 4444444444444444444 111 111 1111111 222
lowQualScore : 000 3 0000 00000000 77 6 6 6 1 6 88 5555555 66666666666666666 55 6 99 8888888 77 66 66 77 5 77 2222 7777 0000 77 44444 8 222222222 6666666 444 8 66666666666666666666666 6 6 99 77 99 6 111111111 99 777 99999 99 1111111111 111 6 7 99 111 6 00 6 444444 8 8 7777777 2 33 0 00 0 3 6 0 666666 0 4444444444444444 3 3 3 3 3 7 44444 2 6 2 55555555555555555555555555 0 11 8 8 0 11111 0 8 999 8 0 0 8 1 0 88 000 11 1 5 3 6 6 333333333 5555555555555555555555 99 99 6 8 5 666666666 3 3 6 33 2 2 5 888888 111 6 2 8 0 0 0 88 11 888 1 0 3 333333 0 66666666 8 4444 99 6 6 6 7777 6 1 6 6 6 33 6 6 0000 000 0 4444 0 8 1 8 5 5 5 77777777777 0 6666666666666666666 000 000 8888888 111
lowQualScore : ... . .... ........ .. . . . . . .. ....... ................. .. . .. ....... .. .. .. .. . .. .... .... .... .. ..... . ......... ....... ... . ....................... . . .. .. .. . ......... .. ... ..... .. .......... ... . . .. ... . .. . ...... . . ....... . .. . .. . . . . ...... . ................ . . . . . . ..... . . . .......................... . .. . . . ..... . . ... . . . . . . .. ... .. . . . . . ......... ...................... .. .. . . . ......... . . . .. . . . ...... ... . . . . . . .. .. ... . . . ...... . ........ . .... .. . . . .... . . . . . .. . . .... ... . .... . . . . . . . ........... . ................... ... ... ....... ...
lowQualScore : 888 2 0000 77777777 99 7 7 7 7 7 33 3333333 55555555555555555 88 7 22 6666666 99 99 99 99 7 99 1111 6666 4444 99 33333 0 000000000 0000000 444 0 22222222222222222222222 7 7 22 77 22 7 888888888 88 888 22222 22 3333333333 777 7 5 22 777 7 55 0 000000 0 0 0000000 5 88 0 22 0 2 5 0 555555 0 0000000000000000 3 3 3 3 3 3 55555 5 5 5 55555555555555555555555555 8 00 0 0 8 66666 8 0 888 0 8 8 0 4 8 44 222 44 0 0 2 7 7 333333333 5555555555555555555555 22 22 7 0 6 333333333 2 2 5 88 5 5 5 888888 000 5 5 0 8 8 8 88 88 888 0 8 2 444444 8 44444444 0 8888 22 7 7 7 8888 7 0 7 7 7 88 7 7 8888 888 8 8888 6 0 0 0 7 7 7 11111111111 1 6666666666666666666 000 000 6666666 444
consensus : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAA-GG-ACATTCTA-A---GGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-CAAA-TTATCAAC--G--TTTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC-ATACAGCA-TTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
Reference ( family-5395 ) : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAA-GG-ACATTCTA-A---GGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-CAAA-TTATCAAC--G--TTTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC-ATACAGCA-TTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
gi|1 : GTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGATA-TT--TGG--AA---ACAC-G---------AACGA-GGGGC--AGCGC-CCCG--AGTG-------GGTGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCGCTTGTA-TCATA-GCCACGCCC--C--------------------CAAGTT-GACTCT-TA--ACTT-GTGCAAA--G-TC-----T---G----CG--------------------------------TTCAT---TA-CAATTT--TTG---TTA-CA-TGGCGTATTTCGA-TGAC-TGTG-GT-A--C--G--AA-TGG-CA-GTT--GAAAAAGC-TGT--TT--AG-GGA-G----TA-GAC--TTGGAGCTATTTTTCC-TTATGTCTTTT-ACAAGGG-AC-TTCTA-C---AGA-AGCGCTGGGCGGAAAAA-AATCCAGC-ACAGC--AGT---GTATTGGTGTT--AAACTAACCAAA-TTA-CAGCATG--TTTATGAAATTCTATT-TGTTGAC-ATGGTGG-T-TGGACGGCAAATCGGGAAACGAATCTGTGCAATACAGCATTTGCAATCAAGC-GGCG-CGAGGAACAAAGAATTTATGACACCGAA-------ATAGAG--AT-----------------GTCT--TTCGTTAGGTTTT-AAACAACAA----ATT------GCGGTG-T-TGATGAA--ATTAAGA-ATATCCAGTG-TTT------AGAACCAAGA-GCGCATCAA-AA-AG-AAC--GTGC---TGATGATCAAT-CCTG-CTC--TGAAT-CGTCCAGATTCATGCAAAAGGAGC-CAAGATTACATCATTTAA----TTTGGTGGA--TTCT-ACGT-GC--T--C-G-AGTTCATGTA-G-GTA-TC--AGT-GTGATGATGATGTGA-CCAGATT---GCAGATTTAT--GTTTTA-TTTCT--TAAAGA---GA-C-GAT-----------A-TTGT--CGTTTTAT---A-----TGTATGTACTG---ATGTATTGTGAGATCATCCCCA--CTTTTTT
gi|10 : AGAAC-GAAT-GAC-----------ATTTGT---GTT---T---------TCTATT---TG---AGATA-------AT-ATCCCC---TTTTTagtattcaaccacaatttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|11 : -AGAAACAAGTGCT-ATAATAATCACT-CCTGTGTCCGCGAATCCGCCCAGATTCATGCATGTGAA-T-CAAGA-TACATCTTTTAA---TTTTGATGGA--TTCT-AGGA-GCTTT--C-G-AGTGCAT-TAGG-ATA-TCCAAGT-G-GATG----TTcagatcgtggaacgacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttt
gi|12 : ATTAGTTACCAC-GTTTATATT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GA---CA-TT--TTGGTAT---ACACAC---------A-CG--AGGACC-AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TTT----CTA-T-AGCA-A--AC--CAAT-----AGAAA
gi|13 : TATATTAGTTACC---ATA-----------------GTT--------TGCA--ATAGA-TACC-C-GATGACA-TT--TTG--AA---ATACAC---------A-CGA-GGGGC--AGCG-----------A-------AACAT--TTCAAA--ATG--T
gi|14 : TGTA-C-ATA-CGCACGCCC--CG-------------------CATGTTTGACTCT-AA--ACT--GTGCAAA--GTTC-----T---GAGTTCGAACAC-A-GTAGTA--GAA-------AATGTATTCAT---AA-CAAT-T--TAG---TTA-CAATaaatgatgcataccagtttatgaatatgaaaactgacagtga
gi|15 : AGAAC-GA-T-GAT-----------ATTTGT--GGTT---TTACA-----TGTATA---TG---AGATA-------ATCATCCCC---CCTTTTTTatca
gi|16 : AAGAAC-GA-T-GGC-----------ATTTGT--GGCT---T-----------TATG---TG---AGATA-------ATCATCACC---CTTTTTgtttaatgtatagaactacaatttgagagagagagagagag
gi|17 : GG--TTCTTACGTTGC-TTGCT-G-AGTTCAT-TAGACGTA-C---AGT-G--ACG----TTTGACCCAGACTTC-GCAGATGT-T--ATGTTATTTTCCGTTAAAGcggaggtatggaaaatctacaaattagagaagagagagag
gi|18 : tga------------CAAGTT-GACTCTAAA--ACTC-GTGCGAAACG-TCTGCATT---GATTCCGAG-AC-ATG-AGTG--GGA-------TA-GTAT
gi|19 : ccAA--ATG--TCA--TCGG-G--TAT----CTA-TTAGCA-A--AC--CAAT-----AGAAAAC-TATA---------ACGGTA-------ACTCACTTag
gi|2 : TGTATTAGTTACC---GTAGATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GTTGACA-TT--TTG--AT---ACAC-C---------A-TG--AGGGC--AGCGC-CCCG--AGTG-------GGTGT--T-CAAA--ATG--TCA--TCGG-G--TAT----AT--T-AGCA-A--AC--CAAT-----AGAAAAACTATA---------ACGGTA-------A-TCACTTGTAACCATA-GCCACGCCC--CAA--GTTGACTCTACGCCCCCAAGT--GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---G--TTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TG-CAATTT--TTG---TTA-CAATGTCGTATCT-GA-T-AC-TGTG-AA-A--CCGA--AACTGC-CA-GTTTGGAAAAAGC-TGT--TT--AGCGGA-G--GGTATATCCGTCGTAGCTTCTTTTCT-TAATTTC-TTTTACAA-GG-AGATTCTACA---GGAGAGCGCTGGGTGGAA-----------------------------------TT--AAACTAA-CAAA-TTATCAGC--A--TTTATGAAA-TCTATT-TG-TGACAAGGATGGAT-TTGACGGCAATTCGGGAAACAAATCTGTGC--TACAGCA-TTGTA-TCAGGTGGGTGTTGAGGAAC-AAGAAATTATCA-ACCG-A-------ATAG-T--ATT------------TTTAATCTG-TTCGTCA--TTAA-AAACAG-AAGAACATTCAATTTG-GATGATATGATGAA--ATTAAGAGATATCCAGTGTTTTACTTTTAGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCTGTGAATCCGTCCAGATTTATGCATAAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACAT-AT-TT--TAG-AGTGCAT-TAGG-GTA-TCCAAGT-A-GATG----TTTGACTCAGACTTCGGCAGATGT-T--GTTTTA-TATCCG-TAAAGAAC-AA-T-GAT-----------ATCTGT--GGGT---TA--A-----TGTATG---TG---AGATA-------ATCATCAAC---CTTTTTTTT
gi|20 : tTGTATTAGTTACC---AGATATTCT----TCTATTGGTT--------TGCT--ATA
gi|3 : aTTCAT---TAACAAACT--TTG---TTAGCAATGGCGT-TAT-AACT-AC-TGTGTAA-ATTCCGA--AA-TGGTCA-GTTTG---AAAGC-TGTGTTC--AG-GCATGTTG-TA-ATCTG---GAGCTATTTTCCTATATTTTC-TTT-GCAA-GGTACATTCTA-ACGAGGAGA-TGCTGG-CGGAAACATAATT---CAGCAGCATGGT---GTATTGGTGTTTAGAACTAA-CAAAATTATACAT--G--TTTATGAAA-TCTATTGTC-TGACATGGGTGGAT-TGGACGCAAATT--GGAAATGAATC-GTGC--TACAGC--TTGTA-TCAGTCCGTCGTCGAGGAAC-AAGAATTAATGT-ACCG-C-------ATAG-G--------------------AATC---TTCGATA--TTTGAAAACAA-AAGA--ATT--------GGTGATAT-ATTGA--ATTAAGAGATATCCAGTG-TTT------AGAGCAAA-A-GCGC-TCAAGAA-AGAAACAAG-GCT-ATA--AATCA-------TCTCCGC---TCCGTCCAGAATCATGCACGA------------------TTTTAAATTTTTTGGTGGA--TTCT-ACGT-GC-TTG-C-GTAGTTCAT-TAGG-G-A-TC--AGTGG-GATGT---TTTGACCCCAAAGTCGGCAGA----------------TCCG-TAAAGAAC-GA-TAGGTAATATTATTGAATTTGTTAGTTT---T---ATTGATTGTACA---TGCATAGATA-------A-CACCCCCCAGCTTTCTTTTa
gi|4 : agttgtaactcatgcaattcagagGGCGGCGAGGAAC-AAGAAATTATGA-ACCG-ACATACATGTAG-GTCATCCTTCGATTATTTATAAATCTG-TTCGTCA--TTAA-AAACAA-AAGAACAT-------G-GGTGATATAATGAATAAATAA-AGATATCCAGTGTTTT------AGAGCCAA-AAGCGCGTCAAGAATAGAAACAAGTGCTCATAAATATCACTACCAGTCTCCG--------TCCAGATTC-TGCAT-ATGA-TGCAAGA-TACATCTTTTAA---TTTTGGTGGAATTTTT-ACGT-GC-TT--C-G-AGTGCAT-TAGG-GTAATCCAGGT-G-G-TG----TTTAACCCAGACTT-GGAAGATGT-TAGGTTTTA-TTTCCG-TAAAGAACAGA-T-GAT-----------AT------------------------GTATG---TG---AAATA-------ATCATCCCCC--CTTTTTTTTttagtcttgaagacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggagaagagatgagaagatgtatg
gi|5 : ATTTTGTCGTCTGTTGGTTGCAGGAACTACTTCATAGAATATC-CTGATGGCA-TTGTTCG--AACCAACAC-A---------A-CATTGGGGC--AGCGC-CCCG--AGTGCATGTATGGT-T--TTAAAA--ATGCATCAAATCGGTGATTATGCAACTAGT-GGCA-G--ATGACAATTATGTAAAAAAA-TATATAATACCATGCGATATTCAACTACTCATTTGTA-C-ATATGCCAGACCCTCCGTGTGTTG------------T--TTT-GA---T-AAGTACTCCGTGCAAA--G-TC-----CATAGAGTTCTGA-ACGA-G-AGTATGGAA-------AT-GTATTCATCCGTA-CGATGTAGTTGACATTA-C--TGGCGTTTAC-AT-T-ACTTGTG-AATA--CCGATGAA-TGA-CATGTTTGAAAGAAGCTTGT--TCTTAG-GGtttaatatgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgt
gi|6 : ag-A---GGAGAACGCTGGGCGGAAAAA-AATT---C---AGC-TAACAATGCATTGGTGTT--AAACTAA-CAAA-TTATCAAC--A--TTTGTGAAA-TTTATA-TG-TGACAAGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGC--TACAGCA-ATGT-ATCACGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G---TC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------t
gi|7 : acTG-------GGTGT--TTCGAA--ATG--TCA--TCGG-G--TAT----CTA-A-AGCA-TTTAC--CAAT-----AGAAAAA-TATA---------ACAGTA-------GCTCACTTGTA-CTATA-GCCACGCCC--C---------------------AAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAAATAGATCTA-GTATTCAT---TT-CAAAAT--TTG---TTG-C-ATGGCGTATC--AA-T-AC-T
gi|8 : GTT--TAACTAA-CAAA-TTATCAAC--AATTTTGTG-AA-TTTA---TA-TGACAAGGGTGGATGTCCCCGACAGTTCGGGAAACGAATCTGTGC-ACACAGCA-ATGTAATCACGCGGGCGTCGAGGAAC-AAG-AATTATGA-ACCG-A-------ATAG-G---TC------------ATAAATCTGTTTCGTCA--TTAG-AA
gi|9 : ggTATTATTTACCCTAGTGTGTTTTGA--CTTATAGG----------------A-AGA-TACCTC-ACCGACAGTTCCTTG--GT---ATAC-TTACTATTCAA-CG--AAGGCCCAACGCTCCCGTTAGTG-------TCCGTCTTTCAAACCATG--TCA--TCGG-G--TTT----CTC-T-TACGCA--AC--CAAT-----AGAAAA
blockSeqs : CTA T GTCG GCAGGAAC TC A T T T G GT AACCA TTACTATTCAACG CC T TT CATGTAT CT CC CA AA T AT GCAA ATT TTT GA TATGT C TAATACCAT TTCAACT ACC T CAAGTTGACTCTACGCCCC T A GT CC AC T TGCATT AG AAC AGT TG ATAGATCTA CCG A T AG ACA G AA A ATAAC . T TAAATT C TG C GT T T G T GTTC C GGGTATATCCGTC A . T . T A ACGA G G G ACATAATTCAGCAGCATGGT TA . A AAT . TTG . G G A AT AA G G T . . ACATACAT GTCATCCTTCGATTATTTATA GT . A . A TCAATTTG A A G TA G G T ACTTTT AA G G T TC AT CTA T C CGAATC GTGAAT . ATTT AT T T T GCT T G . C A CA G . T TCG TAG T T T A A A AATATTATTGA TAGTTTTATTGAT . CAT . CAG
blockSeqs : AC G GA . . . . . T . CC GTAT ACACGA C . . . . . . . . . . AGT CA . . . . . CT . TCCGTGTGTTG . . . C . . CATA AT AG ATG . AAT . . C . . . AA T CTGA . . AATA C . . C . T A . TCTT . TGTTGTAATCTG . . . . . A CA G A G AAAAATTCAGCTAACAAT . . . A . TT . . C . AA A G C T . . A TATTTTT G . . . A T A A A . G G T . A G G . T AT CT T T TGAATC AAGGAT . T . . . . TA . T . . . CA . . . TCG T . A . . . . . GGTTTTACA . . . C
blockSeqs : . T . . . . . . T . . AA AACATT . . . . . . . . . . . AT A . . . . . C . CG . . . C . . T AG AG GAG . TA . . G . . . AA A ACAT . . AAA C . . A . T . . TT . A G . . . . . . G . TA . . A . AA A C G G . . C GTCATA G . . . A G A A . . . G . . A . G . T AA CT A C CTC ATGATG . T . . . . GC . G . . . CA . . . TC T . T . . . . . GGGTTAA . . . .
blockSeqs : . T . . . . . . C . . AT ACACG . . . . . . . . . . . AA A . . . . . C . C . . . C . . T AG GA AG . TA . . A . . . A . CAA . . . . . A . . . . A . T A C G T . . A GTCATA G . . . . . T . . . C . GA . T . . . . C . T . . . . . . . TG . . . . . . . . GGCTT . . . .
blockSeqs : . . . . . . . . . . . GT CATG . . . . . . . . . . . CT A . . . . . . . . T . AG AG . AT . . . . . . . T . . A G . . . . . . . C . G . . . . . . . . . . . GTTT . . . .
blockSeqs : . . . . . . . . . . . T G . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : C** AG AG* ANG** TA******** AA ACGA** A**** ** AA* A* A******** GTCATA**************** G* ** T* CTC*** ATGAAT** T*** C*** CA **** TCG T*** GGTTTA************* *** ******* ***
originalCons : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA-CCATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-AC-A-G-AGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATNT-AA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAA-GG-ACATTCTA-A---GGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-CAAA-TTATCAAC--G--TTTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC-ATACAGCA-TTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-G--ATC------------ATAAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGCATGAGGA-T-CAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
finalCons : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTAC--ATA-GCCACGCCC--CG---GTTG------------CAAGTT-GACTCT-AA--ACTC-GTGCAAA--G-TC-----T---GAGTTCGAG-ACANG--AGTA--GAATA--------GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATACGA--T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAA-GG-ACATTCTA-A---GGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-CAAA-TTATCAACA----TTTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC--TACAGCAA-TGTA-TCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCGA--------ATAGGTCATA----------------AATCTG-TTCGTCA--TTAG-AAACAA-AAGAACATT------G-GGTGATATGATGAA--ATTAAGAGATATCCAGTGTTTT------AGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCTC---CGTCCAGATTCATGCATATGAAT--CAAGA-TACATCTTTTAAT---TTTGGTGGA--TTCT-ACGT-GC-TTC---G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGTT---GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGTGGTTTA-------------TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
Alignments
lowQualScore : 222 2222 22222222 11 1111111 44444444444444444 11 1111111 1111 1111 11111 333333333 2222222 11 11 99999999999999999999 2222222222222 1 3333333333 111 111 11 111111 1111111 11 1 11 1 1 111111 1 4444444444444444 1 1 1 1 1 22222 77777777777777777777777777 11 22222 11111 11 11 1 222222222 555555555555555555555 2222222222 11 4444444 111 33333 11 1111 1111 11 2222 111 1111 22222222222 4444444444444444444 111 111 1111111 222
lowQualScore : 000 3 0000 00000000 77 6 6 6 1 6 88 5555555 66666666666666666 55 6 99 8888888 77 66 66 77 5 77 2222 7777 0000 77 44444 8 222222222 6666666 99 8 8 11 55555555555555555555 6 99 6 77 99 6 0000000000000 777 6 99 1111111111 111 6 7 99 111 6 00 6 999999 8 8 7777777 2 33 0 00 0 3 6 0 666666 0 4444444444444444 3 3 3 3 3 7 44444 2 6 2 55555555555555555555555555 0 11 8 8 0 44444 88 66666 0 0 8 1 0 99 99 6 1 5 3 6 6 333333333 111111111111111111111 99 99 6 8 5 7777777777 3 3 6 33 2 2 4444444 111 6 2 8 0 0 0 88 11 888 1 0 77777 0 999 4 22 8 4444 99 6 6 6 7777 6 1 6 6 6 33 6 6 0000 000 0 4444 0 8 1 8 5 5 5 77777777777 0 6666666666666666666 000 000 8888888 111
lowQualScore : ... . .... ........ .. . . . . . .. ....... ................. .. . .. ....... .. .. .. .. . .. .... .... .... .. ..... . ......... ....... .. . . .. .................... . .. . .. .. . ............. ... . .. .......... ... . . .. ... . .. . ...... . . ....... . .. . .. . . . . ...... . ................ . . . . . . ..... . . . .......................... . .. . . . ..... .. ..... . . . . . .. .. . . . . . . ......... ..................... .. .. . . . .......... . . . .. . . ....... ... . . . . . . .. .. ... . . ..... . ... . .. . .... .. . . . .... . . . . . .. . . .... ... . .... . . . . . . . ........... . ................... ... ... ....... ...
lowQualScore : 888 2 0000 77777777 99 7 7 7 7 7 33 3333333 55555555555555555 88 7 22 6666666 99 99 99 99 7 99 1111 6666 4444 99 33333 0 000000000 0000000 00 0 0 00 22222222222222222222 7 22 7 77 22 7 7777777777777 888 3 22 3333333333 777 7 5 22 777 7 55 0 000000 0 0 0000000 5 88 0 22 0 2 5 0 555555 0 0000000000000000 3 3 3 3 3 3 55555 5 5 5 55555555555555555555555555 8 00 0 0 8 00000 88 00000 8 8 0 4 8 00 22 0 0 0 2 7 7 333333333 888888888888888888888 22 22 7 0 6 3333333333 2 2 5 88 5 5 2222222 000 5 5 0 8 8 8 88 88 888 0 8 22222 8 888 0 66 0 8888 22 7 7 7 8888 7 0 7 7 7 88 7 7 8888 888 8 8888 6 0 0 0 7 7 7 11111111111 1 6666666666666666666 000 000 6666666 444
consensus : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA--C-ATA-GCC--ACGCCCCG---GTTG------------CAAGTT-GACTCTAA--A-CT-CGTGCAAA--G-TCT---GAGTT-----CGAG-ACA-GAGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATN-CGA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAA-GG-ACATTCTA-A---GGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-CAAA-TTATCAACA--T--TTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGCA-TACAGCA-NTGTAATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-GTCAT---------------AAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACA------TTG-GGTGATATGATGAA--ATTAAGAGATATCCAGTG------TTTTAGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGCGAATCCGTCCAGATTCATGC-ATANGAATCAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
Reference ( family-5395 ) : NTGTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGACA-TT--TTG--AN---ACAC-C---------A-CG--GGGGC--AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCACTTGTA--C-ATA-GCC--ACGCCCCG---GTTG------------CAAGTT-GACTCTAA--A-CT-CGTGCAAA--G-TCT---GAGTT-----CGAG-ACANGAGTA--GAA-------TA-GTATTCAT---TA-CAATNT--TTG---TTA-CAATGGCGTATA-CGA-T-AC-TGTG-AA-A--CCGA--AA-TGG-CA-GTTTGGAAAAAGC-TGT--TC--AG-GGA-G--G-TA-ATCCGTCGGAGCTATTTTTCT-TAATTTC-TTT-ACAA-GG-ACATTCTA-A---GGAGAGCGCTGGGCGGAAAAA-AATT---C-GCAGC-TAGC---GTATTGGTGTT--AAACTAA-CAAA-TTATCAACA--T--TTATGAAA-TCTATT-TG-TGACAAGGGTGGAT-TGGACGGCAATTCGGGAAACGAATCTGTGC--TACAGCA-ATGT-ATCANGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-GTCAT---------------AAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACA------TTG-GGTGATATGATGAA--ATTAAGAGATATCCAGTG------TTTTAGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCCGC---TCCGTCCAGATTCATGC-ATATGAATCAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACGT-GC-TT--C-G-AGTNCAT-TAGG-GTA-TCCAAGT-G-GATG----TTTGACCCAGACTTCGGCAGATGT-T--GTTTTA-TTTCCG-TAAAGAAC-GA-T-GAT-----------ATTTGT--GGTT---T---A-----TGTATG---TG---AGATA-------ATCATCCCC---CTTTTTTTT
gi|1 : GTATTAGTTACC---GTATATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GATGATA-TT--TGG--AA---ACAC-G---------AACGA-GGGGC--AGCGC-CCCG--AGTG-------GGTGT--TTCAAA--ATG--TCA--TCGG-G--TAT----CTA-T-AGCA-A--AC--CAAT-----AGAAAAA-TATA---------ACGGTA-------ACTCGCTTGTAT-C-ATA-GCC--ACGCCCC--------------------CAAGTT-GACTCTTA--A-CT-TGTGCAAA--G-TCT---G---------CG------------------------------TTCAT---TA-CAATTT--TTG---TTA-CA-TGGCGTATTTCGA-TGAC-TGTG-GT-A--C--G--AA-TGG-CA-GTT--GAAAAAGC-TGT--TT--AG-GGA-G----TA-GAC--TTGGAGCTATTTTTCC-TTATGTCTTTT-ACAAGGG-AC-TTCTA-C---AGA-AGCGCTGGGCGGAAAAA-AATCCAGC-ACAGC--AGT---GTATTGGTGTT--AAACTAACCAAA-TTA-CAGCATGT--TTATGAAATTCTATT-TGTTGAC-ATGGTGG-T-TGGACGGCAAATCGGGAAACGAATCTGTGCAATACAGCATTTGCAATCAAGC-GGCG-CGAGGAACAAAGAATTTATGACACCGAA-------ATAG----AG---------------ATGTCT--TTCGTTAGGTTTT-AAACAACAA----A------TTGCGGTG-T-TGATGAA--ATTAAGA-ATATCCAGTG-------TTTAGAACCAAGA-GCGCATCAA-AA-AG-AAC--GTGC---TGATGATCAAT-CCTG-CTCTGA---ATCGTCCAGATTCATGCAAAAGGAGCCAAGATTACATCATTTAA----TTTGGTGGA--TTCT-ACGT-GC--T--C-G-AGTTCATGTA-G-GTA-TC--AGT-GTGATGATGATGTGA-CCAGATT---GCAGATTTAT--GTTTTA-TTTCT--TAAAGA---GA-C-GAT-----------A-TTGT--CGTTTTAT---A-----TGTATGTACTG---ATGTATTGTGAGATCATCCCCA--CTTTTTT
gi|10 : AGAAC-GAAT-GAC-----------ATTTGT---GTT---T---------TCTATT---TG---AGATA-------AT-ATCCCC---TTTTTagtattcaaccacaatttgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|11 : -AGAAACAAGTGCT-ATAATAATCACT-CCTGTGTCCGCGAATCCGCCCAGATTCATGC-ATGTGAATCAAGA-TACATCTTTTAA---TTTTGATGGA--TTCT-AGGA-GCTTT--C-G-AGTGCAT-TAGG-ATA-TCCAAGT-G-GATG----TTcagatcgtggaacgacatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttt
gi|12 : ATTAGTTACCAC-GTTTATATT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GA---CA-TT--TTGGTAT---ACACAC---------A-CG--AGGACC-AGCGC-CCCG--AGTG-------GGCGT--TTCAAA--ATG--TCA--TCGG-G--TTT----CTA-T-AGCA-A--AC--CAAT-----AGAAA
gi|13 : TATATTAGTTACC---ATA-----------------GTT--------TGCA--ATAGA-TACC-C-GATGACA-TT--TTG--AA---ATACAC---------A-CGA-GGGGC--AGCG-----------A-------AACAT--TTCAAA--ATG--T
gi|14 : TGTA--C-ATA-CGC--ACGCCCCG-------------------CATGTTTGACTCTAA--A-CT--GTGCAAA--GTTCT---GAGTT-----CGAACACAGTAGTA--GAA-------AATGTATTCAT---AA-CAAT-T--TAG---TTA-CAATaaatgatgcataccagtttatgaatatgaaaactgacagtga
gi|15 : AGAAC-GA-T-GAT-----------ATTTGT--GGTT---TTACA-----TGTATA---TG---AGATA-------ATCATCCCC---CCTTTTTTatca
gi|16 : AAGAAC-GA-T-GGC-----------ATTTGT--GGCT---T-----------TATG---TG---AGATA-------ATCATCACC---CTTTTTgtttaatgtatagaactacaatttgagagagagagagagag
gi|17 : GG--TTCTTACGTTGC-TTGCT-G-AGTTCAT-TAGACGTA-C---AGT-G--ACG----TTTGACCCAGACTTC-GCAGATGT-T--ATGTTATTTTCCGTTAAAGcggaggtatggaaaatctacaaattagagaagagagagag
gi|18 : tga------------CAAGTT-GACTCTAA--AACT-CGTGCGAAACG-TCT---GCATTGATTCCGAG-ACATGAGTG--GGA-------TA-GTAT
gi|19 : ccAA--ATG--TCA--TCGG-G--TAT----CTA-TTAGCA-A--AC--CAAT-----AGAAAAC-TATA---------ACGGTA-------ACTCACTTag
gi|2 : TGTATTAGTTACC---GTAGATTTT----TCTATTGGTT--------TGCT--ATAGA-TACC-C-GTTGACA-TT--TTG--AT---ACAC-C---------A-TG--AGGGC--AGCGC-CCCG--AGTG-------GGTGT--T-CAAA--ATG--TCA--TCGG-G--TAT----AT--T-AGCA-A--AC--CAAT-----AGAAAAACTATA---------ACGGTA-------A-TCACTTGTAACC-ATA-GCC--ACGCCCCAA--GTTGACTCTACGCCCCCAAGT--GACTCTAA--A-CT-CGTGCAAA--G-TCT---G--TT-----CGAG-ACA-GAGTA--GAA-------TA-GTATTCAT---TG-CAATTT--TTG---TTA-CAATGTCGTATC-TGA-T-AC-TGTG-AA-A--CCGA--AACTGC-CA-GTTTGGAAAAAGC-TGT--TT--AGCGGA-G--GGTATATCCGTCGTAGCTTCTTTTCT-TAATTTC-TTTTACAA-GG-AGATTCTACA---GGAGAGCGCTGGGTGGAA-----------------------------------TT--AAACTAA-CAAA-TTATCAGCA--T--TTATGAAA-TCTATT-TG-TGACAAGGATGGAT-TTGACGGCAATTCGGGAAACAAATCTGTGC--TACAGCA-TTGT-ATCAGGTGGGTGTTGAGGAAC-AAGAAATTATCA-ACCG-A-------ATAGTATTTT---------------TAATCTG-TTCGTCA--TTAA-AAACAG-AAGAACATTCAATTTG-GATGATATGATGAA--ATTAAGAGATATCCAGTGTTTTACTTTTAGAGCCAA-A-GCGCGTCAAGAA-AGAAACAAGTGCT-ATAATAATCACT-CCTGTCTCTGTGAATCCGTCCAGATTTATGC-ATAAGGATCAAGA-TACATCTTTTAA---TTTTGGTGGA--TTCT-ACAT-AT-TT--TAG-AGTGCAT-TAGG-GTA-TCCAAGT-A-GATG----TTTGACTCAGACTTCGGCAGATGT-T--GTTTTA-TATCCG-TAAAGAAC-AA-T-GAT-----------ATCTGT--GGGT---TA--A-----TGTATG---TG---AGATA-------ATCATCAAC---CTTTTTTTT
gi|20 : tTGTATTAGTTACC---AGATATTCT----TCTATTGGTT--------TGCT--ATA
gi|3 : aTTCAT---TAACAAACT--TTG---TTAGCAATGGCGT-TA-TAACT-AC-TGTGTAA-ATTCCGA--AA-TGGTCA-GTTTG---AAAGC-TGTGTTC--AG-GCATGTTG-TA-ATCTG---GAGCTATTTTCCTATATTTTC-TTT-GCAA-GGTACATTCTA-ACGAGGAGA-TGCTGG-CGGAAACATAATT---CAGCAGCATGGT---GTATTGGTGTTTAGAACTAA-CAAAATTAT--ACA--TGTTTATGAAA-TCTATTGTC-TGACATGGGTGGAT-TGGACGCAAATT--GGAAATGAATC-GTGC--TACAGCT--TGT-ATCAGTCCGTCGTCGAGGAAC-AAGAATTAATGT-ACCG-C-------ATAG-G--------------------AATC---TTCGATA--TTTGAAAACAA-AAGA--A------TT--GGTGATAT-ATTGA--ATTAAGAGATATCCAGTG-------TTTAGAGCAAA-A-GCGC-TCAAGAA-AGAAACAAG-GCT-ATA--AATCA-------TCTCCGC---TCCGTCCAGAATCATGC---ACGA--------------TTTTAAATTTTTTGGTGGA--TTCT-ACGT-GC-TTG-C-GTAGTTCAT-TAGG-G-A-TC--AGTGG-GATGT---TTTGACCCCAAAGTCGGCAGA----------------TCCG-TAAAGAAC-GA-TAGGTAATATTATTGAATTTGTTAGTTT---T---ATTGATTGTACA---TGCATAGATA-------A-CACCCCCCAGCTTTCTTTTa
gi|4 : agttgtaactcatgcaattcagagGGCGGCGAGGAAC-AAGAAATTATGA-ACCG-ACATACATGTAG-GTCATCCTTCGATTATTTATAAATCTG-TTCGTCA--TTAA-AAACAA-AAGAACA------T-G-GGTGATATAATGAATAAATAA-AGATATCCAGTG------TTTTAGAGCCAA-AAGCGCGTCAAGAATAGAAACAAGTGCTCATAAATATCACTACCAGTCTCCG--------TCCAGATTC-TGC-ATATGATGCAAGA-TACATCTTTTAA---TTTTGGTGGAATTTTT-ACGT-GC-TT--C-G-AGTGCAT-TAGG-GTAATCCAGGT-G-G-TG----TTTAACCCAGACTT-GGAAGATGT-TAGGTTTTA-TTTCCG-TAAAGAACAGA-T-GAT-----------AT------------------------GTATG---TG---AAATA-------ATCATCCCCC--CTTTTTTTTttagtcttgaagacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggagaagagatgagaagatgtatg
gi|5 : ATTTTGTCGTCTGTTGGTTGCAGGAACTACTTCATAGAATATC-CTGATGGCA-TTGTTCG--AACCAACAC-A---------A-CATTGGGGC--AGCGC-CCCG--AGTGCATGTATGGT-T--TTAAAA--ATGCATCAAATCGGTGATTATGCAACTAGT-GGCA-G--ATGACAATTATGTAAAAAAA-TATATAATACCATGCGATATTCAACTACTCATTTGTA--C-ATATGCCAGACCCTCCGTGTGTTG------------T--TTT-GA---TAAGTA-CTCCGTGCAAA--G-TCCATAGAGTT-----CTGA-ACGAGAGTATGGAA-------AT-GTATTCATCCGTA-CGATGTAGTTGACATTA-C--TGGCGTTTA-CAT-T-ACTTGTG-AATA--CCGATGAA-TGA-CATGTTTGAAAGAAGCTTGT--TCTTAG-GGtttaatatgaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgt
gi|6 : ag-A---GGAGAACGCTGGGCGGAAAAA-AATT---C---AGC-TAACAATGCATTGGTGTT--AAACTAA-CAAA-TTATCAACA--T--TTGTGAAA-TTTATA-TG-TGACAAGGGTGGAT-TGGACGACAGTTCGGGAAACGAATCTGTGC--TACAGCA-ATGT-ATCACGCGGGCGTCGAGGAAC-AAGAAATTATGA-ACCG-A-------ATAG-GTCAT---------------AAATCTG-TTCGTCA--TTAG-AAACAA-AAGAACA------TTt
gi|7 : acTG-------GGTGT--TTCGAA--ATG--TCA--TCGG-G--TAT----CTA-A-AGCA-TTTAC--CAAT-----AGAAAAA-TATA---------ACAGTA-------GCTCACTTGTA--CTATA-GCC--ACGCCCC---------------------AAGTT-GACTCTAA--A-CT-CGTGCAAA--G-TCT---GAGTT-----CGAG-ACA-GAGTA--GAAATAGATCTA-GTATTCAT---TT-CAAAAT--TTG---TTG-C-ATGGCGTAT--CAA-T-AC-T
gi|8 : GTT--TAACTAA-CAAA-TTATCAACAATT--TTGTGAA--TTTAT---A-TGACAAGGGTGGATGTCCCCGACAGTTCGGGAAACGAATCTGTGCA-CACAGCA-ATGTAATCACGCGGGCGTCGAGGAAC-AAG-AATTATGA-ACCG-A-------ATAG-GTCAT---------------AAATCTGTTTCGTCA--TTAG-AA
gi|9 : ggTATTATTTACCCTAGTGTGTTTTGA--CTTATAGG----------------A-AGA-TACCTC-ACCGACAGTTCCTTG--GT---ATAC-TTACTATTCAA-CG--AAGGCCCAACGCTCCCGTTAGTG-------TCCGTCTTTCAAACCATG--TCA--TCGG-G--TTT----CTC-T-TACGCA--AC--CAAT-----AGAAAA