lowQualScore : 111111111111111111111111111111111111111111 1111111111111111111111111111111111111 11111111111111 4444444444444444444444444444444444444444444444444444444444444
lowQualScore : 11 33333333 222222222 333333333 111 1 4444444 1111111111 1 1 222222222222 111 2222 777777777777777777777777777777777777777777 3333333333333333333333333333333333333 11 2 4 555555 22222222222222 11 55 11 33 0000000000000000000000000000000000000000000000000000000000000 1
lowQualScore : 66 77 5 11111111 5 1 6 5 4 99 666666666 3 777777777 111 0 5 7 0 4 5 0000000 9999999999 0 5 2 0 555555555555 666 7 0 8888 7 222222222222222222222222222222222222222222 1 2 8888888888888888888888888888888888888 6 4 99 4 2 0 3 4 4 0 3 333333 2 66666666666666 2 2 3 66 6 6 6 55 22 2 33 4 3 2 6 2222222222222222222222222222222222222222222222222222222222222 6 6 5
lowQualScore : .. .. . ........ . . . . . .. ......... . ......... ... . . . . . . ....... .......... . . . . ............ ... . . .... . .......................................... . . ..................................... . . .. . . . . . . . . ...... . .............. . . . .. . . . .. .. . .. . . . . ............................................................. . . .
lowQualScore : 00 77 0 11111111 0 1 9 0 0 11 777777777 5 333333333 777 7 7 7 9 7 6 6666666 6666666666 0 0 0 0 222222222222 000 3 7 3333 3 000000000000000000000000000000000000000000 0 5 0000000000000000000000000000000000000 0 0 55 0 5 0 0 0 0 0 0 555555 5 00000000000000 5 5 0 00 0 0 0 00 00 5 00 0 0 5 0 0000000000000000000000000000000000000000000000000000000000000 0 0 0
consensus : TTCTCAGAAA-A-ATAGGCACAACTAGCCTGC-GT-ACCTG-TCGCAGGTNTA-TCNTGCG-TTGTAGAANGAA---AAGTATG-TTGATA-ACAG---GTTGGC-GTNCGTNTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTA-TT-TTTCATT-GAAATGCATTCATGAAAAGAAAA-C-TTTT-AAAATATGATAGGCCAAACTTTTGAAAAAACCCAAAA----TACCGATGTCGCCAA---N------A---------ACG----TTTT-----TTTGTCGAAGCGGTTTCAGAAGACATATATTATCATATGTGATCATATATGTGTTTCAGAAACGGCATGATGCNTCTACATACAAGGGAAAACANTACCANTNGGACATTNGATCATATANAANTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGCAANTTC---CGAAACAGTTTTTAGTGCATNTATCTCAATTGATAATGTAGGTATGAAAGGAATATNAANGTTGCATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTCCAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGNCATAAAGTTTGAAANATCAAATGTCGCATATANGAGNCTAATNNNNNNNNACCTACATAACGCG-----------ATA-TGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAA
Reference ( gi|1 ) : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAAGTATA-TCTTGCA-TTGTAGAATGAA---AAATATGCTTGATAAATAG---GTTGGC-GTTCATTTTAAGTAT-ATGTATTATTTAAA--TGTATTTGTGATTTA-TT-TTCCATT-GAAATGCATTCATGAAAAGAAAA-C-TATTAAAAATATGATGAGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCAA---T------A---------AT-----TTTT-----TTGGTAAAAACAGTTTTAGAAGACATATATTATCATATATTATCATATATGTGTTTTTGAAAGAGTATGATACTTCTACATACAAGGGAAAACTGTACCATTGGGAC-TTTGATCATATAAAAATATTTT-TTCACTCTTTTGCAGTTG---T--CGCAAGTTATAGCGTAACAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAATAACAAA--AAAATATTGCCATAAAGTTTTTAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACACGTGTTCTTGTACATAATGTAGCAATTATATA------ATATGGATTTCAAGATAGA-TAGTCATTTTTGGATGCCAAATAACCCTTTGGCAAAAATCCCATGCTAATTATTTTCTTGAACAGATTTAAAACGTAAATGAATTCTAATCTCCGTTATTACAACCTCCATAATGAACGTTTTAAAAAAAAGTCCCCGAAACAAAATGACTGGGTGGAATTACATCGGCGGAAATCAATATATATGTGAGGCACACGCTCTATCATCAAAATGGAATATGTATC
gi|2 : TTCTCAGAAA-ATATAGGTACAATTAGCCTGC-GT-ACTTG-TTGCAAGTATA-TCTTGCG-TTGTGGAAAGAA---AAGTGTGCTTGATAAATAG---GTTGGC-ATGCGTTTTAAGTAT-------TGTTTAAA--TGTATCTGTGAGTCG-TT-TGTCATT-GAAATGCATTCATGAGAAGAAAA-CGTTTTAAA--TATGA------AAAC----------GCCCAAAA----TACCGATGTCGCCAA---T------ACAGAAACAAATGTTCCTTTT-----TTTGTTGAAGCGCTTTCAGAAGACATATATT----------ATCATATAT-----------------TGATGCATCTACATACAAGGGAAAACAGTACCAATGGGACATTGGATCATATAAAATTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGTAACTTC---CGAAACAGTTTTTAGTACATATATCTCAATTAATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACATGAATTTCTTAAGATCAATGTTTCAAATAT
gi|5 : tcaTTCTCAGACA-A--TAGGCACAATTAGCCTTC-AT-ACCTG-TCACAGGCATA-CCATGCG-TTGTAGAAAGAA---AGGTATGCTTAATATATAG---ATTGGC-ATGCGTTTTAA-------GCATTATTGACA--TATATTTGTGATTTA-TT-TTTCATT-GAAg
gi|9 : tcatttaTTCTCAGAGA-A--TAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGCG-TTGTAG--TAAAC--AAGTATG--TG-----CAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT-------A--TGTATTTGTAATTTA-TT-TTTCATT-GAAATGCAT
gi|14 : aTTCTCAGAAT-A--CAGGCACAATTAGCCTGC-AT-ACCTG-TCGCAAATATA-TCTTGCG-TTGTAGAAAGA
gi|8 : tcaTTCTCAGAGC-A-ATAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGCG-TTGTAG--TAAA---CAACGTA--TGGTG--CAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT------AA--TGTATTTGTAATTTATTT-TTCCATTAGAAATGCA
gi|7 : attaaTTCTCAGCAGCA-ATAAGTACGACTAGC--------ACCTG-TTGCAGATTTAATCATGCG-TTGTAG--TAAACACAAGTATGGT-----GCCAG---GTTGCCCGTCCGTGTTTACTATTACGTAT------AC--TGTATTTGTAATTTATTT-TTCCATTAGAAATG
gi|4 : aattaaA-A-ATAG-CACAATTAGCCTGCCGTTACCTGATCGGAATT----TCTTGCAGTTGTAGAA-------AAGTATGAT-GATAAATAGTGGGTTGGC-GTTT----------T-ACGTATTATTTAAAATCGTATTTGTGATTTA-TTACTTCATT-GAA--GC-TTCATGAAAAGAAA
gi|16 : c-GT-AC-TG-TCGCAAGTATA-TCTTGCG-TTGTAGAActt
gi|13 : GC-GTGCGTTTTAA-----AAGTATTATCTAAA--TGTATTTGTGAATTA-TT-TTTCATT-GAAATGCATTCATGAAAAGAAAACC-TTTT--AAATATGATAGGCCAAA
gi|6 : ATTTACA--TGT-TTTGTGATTTA-TA-TTTCGTT-GAAATGCATTCTTGAAAAGAAAA-C-TTTTTAAA-TGTGATAGGCCGAACTTTTGAAAAAACCCAAAA----TACCGATGTCACCAA---CACAGAAA---------AC-----TTT---------GTCAAAGCAGTTTCAGAAGACATA
gi|11 : AATATGATAAGCCAAAGTTTTGAAAAAAAACAAAAATTCCACCAA---CGCAAAAACG------A---------ATG----TTTTCCTTATTTGCCAAAACAGTTTTA-AAGACATATATTATCATATGT
gi|12 : TTTTAGAAGACGCATGT-ATCATATATGAT------TGTGTTTCAGAAACGGCATGATGCTTCTACATACAAGGGAAAACATTACCATTTGAAC-TTTGATCATATATAAATATTgtg
gi|3 : TTTTTTGCAGTTG---T--CGCAAGTT--------------TTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAGGAATATTAACGTTGCATATCATCGGATAGACGTTAATTTCTTAAAATCAATATT---AATAT
gi|10 : GGAAATACGTTAATTTCTTAAGATCAATATTCTAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGACATAAAGTTTGAAAAATTAAATATCGCATATACGAAACTAATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacctacataacgcgatatgtggtgatatagcctccatgtgaactatatactattgatttctgggtgccaaataacccttttgcaaa
gi|15 : AATGCTGCCATAAAGTTTAAAATATCAAATGTCGCATATAAGAGCCTAActacac
gi|3 : ACCTACATAACGCG-----------ATA-TGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAAc
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 11 22222222 11 5555555555555 11111 1 2222 11111111111111111111111111111111111111 55555555555555555555555555555 2 1 666666666666666666666 11 11 99999999999999 333 222222 55555 1
lowQualScore : 5 44 3 00000000 4 2 1 4 1 4 4 00 1 2222222222222 5 1 2 2 9999999 55555 66 4 8 8 0 0 8 0 1 3 1111 3 0 11111111111111111111111111111111111111 22 2 3 00000000000000000000000000000 1 1 1 1 3 1 1 1 5 2 222222222222222222222 1 0 1 1 0 00 88 1 3 1 0 1 11 88888888 77777777777777 555 2 888888 00000 3 5 3 2 3
lowQualScore : . .. . ........ . . . . . . . .. . ............. . . . . ....... ..... .. . . . . . . . . . .... . . ...................................... .. . . ............................. . . . . . . . . . . ..................... . . . . . .. .. . . . . . .. ........ .............. ... . ...... ..... . . . . .
lowQualScore : 0 44 2 44444444 4 7 0 4 0 4 4 44 3 9999999999999 0 0 8 8 2222222 44444 11 4 9 9 8 5 0 8 4 2 2222 2 2 22222222222222222222222222222222222222 22 0 2 00000000000000000000000000000 0 0 0 0 7 0 0 0 0 5 333333333333333333333 0 7 0 0 7 88 00 0 7 0 7 0 77 00000000 00000000000000 000 5 000000 00000 0 0 0 5 0
consensus : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGCTTGATA-AA---CAGGTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT----TATGTGTTTC-GAAA-GGCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCNTTTGCAGTTG---T--CGCAA-TT----CG-AACAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
Reference ( family-533 ) : TTCTCAGAAA-A-ATAGGCACAACTAGCCTGC-GT-ACCTG-TCGCAGGTNTA-TCNTGC-GTTGTAG-AANGAAAAGTATG-TTGATA-A----CAGGTTGGC-GTNCGTNTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTAAAA-TATGATAGGCCAAACTTTTGAAAAAACCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCGGTTTCAGAAGACATATATTATCATATGTGATCATATATGTGTTTCAGAAACGGCATGATGCNTCTACATACAAGGGAAAACANTACCANTNGGACATTNGATCATATANAANTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGCAANTTC---CGAAACAGTTTTTAGTGCATNTATCTCAATTGATAATGTAGGTATGAAAGGAATATNAANGTTGCATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTCCAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGNCATAAAGTTTGAAANATCAAATGTCGCATATANGAGNCTAATNNNNNNNNACCTACATAACGCG-----------AT-ATGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAA
gi|1 : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAAGTATA-TCTTGC-ATTGTAG-AATGAAAAATATGCTTGATA-AA---TAGGTTGGC-GTTCATTTTAAGTAT-ATGTATTATTTAAA--TGTATTTGTGATTTATT-TTC-CATT-GAAATGCATTCATGAAAAGAAAACTATTAAAAATATGATGAGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ATA---------AT-----TT----TT-----TTGGTAAAAACAGTTTTAGAAGACATATATTATCATATATTATCATATATGTGTTTTTGAAAGAGTATGATACTTCTACATACAAGGGAAAACTGTACCATTGGGAC-TTTGATCATATAAAAATATTTT-TTCACTCTTTTGCAGTTG---T--CGCAAGTTATAGCGTAACAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAATAACAAA--AAAATATTGCCATAAAGTTTTTAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACACGTGTTCTTGTACATAATGTAGCAATTATATA------ATATGGATTTCAAGATAGA-TAGTCATTTTTGGATGCCAAATAACCCTTTGGCAAA
gi|10 : GGAAATACGTTAATTTCTTAAGATCAATATTCTAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGACATAAAGTTTGAAAAATTAAATATCGCATATACGAAACTAATaatcccatgctaattattttcttgaacagatttaaaacgtaaatgaattctaatctccgttattacaacctccataatgaacgttttaaaaaaaagtccccgaaacaaaatgactgggtggaattacatcggcggaaatcaatatatatgtgaggcacacgctctatcatcaaaatggaatatgtatc
gi|11 : AA-TATGATAAGCCAAAGTTTTGAAAAAAAACAAAAATTCCACCAACG----CA------AAA---------ACGAATGTT----TTCCTTATTTGCCAAAACAGTTTTA-AAGACATATATTATCATATGTGctacac
gi|12 : TTTTAGAAGACGCATGT-ATCATATATGAT------TGTGTTTCAGAAACGGCATGATGCTTCTACATACAAGGGAAAACATTACCATTTGAAC-TTTGATCATATATAAATATTtg
gi|13 : GC-GTGCGTTTTAA-----AAGTATTATCTAAA--TGTATTTGTGAATTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACCTTTTAAA-TATGATAGGCCAAA
gi|14 : TTCTCAGAAT-A--CAGGCACAATTAGCCTGC-AT-ACCTG-TCGCAAATATA-TCTTGC-GTTGTAG-AAAGA
gi|15 : tcaAATGCTGCCATAAAGTTTAAAATATCAAATGTCGCATATAAGAGCCTAA
gi|16 : -GT-AC-TG-TCGCAAGTATA-TCTTGC-GTTGTAG-AAc
gi|2 : TTCTCAGAAA-ATATAGGTACAATTAGCCTGC-GT-ACTTG-TTGCAAGTATA-TCTTGC-GTTGTGG-AAAGAAAAGTGTGCTTGATA-AA---TAGGTTGGC-ATGCGTTTTAAGTATTG-------TTTAAA--TGTATCTGTGAGTCGTT-TGT-CATT-GAAATGCATTCATGAGAAGAAAACGTTTTAAA-TATGA------AAAC----------GCCCAAAA----TACCGATGTCGCCA------ATACAGAAACAAAT----GTTCCTTTT-----TTTGTTGAAGCGCTTTCAGAAGACATATATTATCATA----------TAT-----------------TGATGCATCTACATACAAGGGAAAACAGTACCAATGGGACATTGGATCATATAAAATTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGTAACTTC---CGAAACAGTTTTTAGTACATATATCTCAATTAATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACATGAATTTCTTAAGATCAATGTTTCAAATAT
gi|3 : tcaTTTGCAGTTG---T--CGCAA--------------GTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAGGAATATTAACGTTGCATATCATCGGATAGACGTTAATTTCTTAAAATCAATATT---AATATg
gi|3 : tttACCTACATAACGCG-----------AT-ATGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacctacataacgcgatatgtggtgatatagcctccatgtgaactatatactattgatttctgggtgccaaataacccttttgcaaa
gi|4 : ttttttgcagttgtcgcaagtttttagtgcatctatctcaattgataatgtaggtatgaaaggaatattaacgttgcatatcatcggatagacgttaatttcttaaaatcaatattaatattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttA-A-ATAG-CACAATTAGCCTGCCGTTACCTGATCGGA---ATT-TCTTGCAGTTGTAG-AA----AAGTATG-ATGATA-AATAGTGGGTTGGC-GTT-----------TTACGTATTATTTAAAATCGTATTTGTGATTTATTACTT-CATT-GAA--GC-TTCATGAAAAG-AAACTT
gi|5 : cTTCTCAGACA-A--TAGGCACAATTAGCCTTC-AT-ACCTG-TCACAGGCATA-CCATGC-GTTGTAG-AAAGAAAGGTATGCTTAATATA----TAGATTGGC-ATGCGTTTTAA-------GCATTATTGACA--TATATTTGTGATTTATT-TTT-CATT-GAA
gi|6 : tcatttaATTTACA--TGT-TTTGTGATTTATA-TTT-CGTT-GAAATGCATTCTTGAAAAGAAAACTTTTTAAA-TGTGATAGGCCGAACTTTTGAAAAAACCCAAAA----TACCGATGTCACCAACACAGAAA---------AC------------------TTTGTCAAAGCAGTTTCAGAAGACATA
gi|7 : TTCTCAGCAGCA-ATAAGTACGACTAGC--------ACCTG-TTGCAGATTTAATCATGC-GTTGTAGTAAACACAAGTATG-GTGC--------CAGGTTGCCCGTCCGTGTTTACTATTACGTAT------AC--TGTATTTGTAATTTATT-TTTCCATTAGAAATG
gi|8 : aattaaTTCTCAGAGC-A-ATAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAAACAACGTATG-GTG---------CAGGTTGCC-GTCCGTGTTTAGTATTACGTAT------AA--TGTATTTGTAATTTATT-TTTCCATTAGAAATGCA
gi|9 : attaaTTCTCAGAGA-A--TAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAA-ACAAGTATG-T------G----CAGGTTGCC-GTCCGTGTTTAGTATTACGTAT-------A--TGTATTTGTAATTTATT-TTT-CATT-GAAATGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 11 22222222 22222222 111 11111 2222 11111111111111111111111111111111111111 000000000000000000000000000 1 1 333333 9999999999999 11 44444444444 1 222 222222 22222 1
lowQualScore : 5 44 3 00000000 4 2 4 1 4 4 7 1 44444444 000 5 1 3 2 9999999 55555 66 4 8 8 0 8 0 1 3 1111 3 0 11111111111111111111111111111111111111 22 3 111111111111111111111111111 3 5 1 222222 2222222222222 77 88 1 33333333333 5 111 1 888888 66666 1 5 1 1 1
lowQualScore : . .. . ........ . . . . . . . . ........ ... . . . . ....... ..... .. . . . . . . . . .... . . ...................................... .. . ........................... . . . ...... ............. .. .. . ........... . ... . ...... ..... . . . . .
lowQualScore : 0 44 2 44444444 4 7 4 0 4 4 6 3 99999999 000 0 0 0 8 2222222 44444 11 4 9 9 8 0 8 4 2 2222 2 2 22222222222222222222222222222222222222 22 2 777777777777777777777777777 3 0 0 777777 7777777777777 22 00 0 55555555555 5 000 0 000000 55555 0 0 0 0 0
consensus : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA-CT-C--CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
Reference ( family-533 ) : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGCTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT----TATGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCNTTTGCAGTTG---T--CGCAA-TT----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
gi|1 : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAAGTATA-TCTTGC-ATTGTAG-AATGAAAAATATGCTTGATAAATAG---GTTGGC-GTTCATTTTAAGTAT-ATGTATTATTTAAA--TGTATTTGTGATTTATT-TTC-CATT-GAAATGCATTCATGAAAAGAAAACTATTAAAAATATGATGAGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ATA---------AT-----TT----TT-----TTGGTAAAAACAGTTTTAGAAGACATATATTATCATATATTATCATATATGTGTTTTTGAAA-GAGTATGATACTTCTACATACAAGGGAAAACTGTACCATTGGGAC-TTTGATCATATAAAAATATTTT-TTCACTCTTTTGCAGTTG---T--CGCAAGTTATAGCGTAA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAATAACAAA--AAAATATTGCCATAAAGTTTTTAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACACGTGTTCTTGTACATAATGTAGCAATTATATA------ATATGGATTTCAAGATAGA-TAGTCATTTTTGGATGCCAAATAACCCTTTGGCAAA
gi|10 : GGAAATACGTTAATTTCTTAAGATCAATATTCTAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGACATAAAGTTTGAAAAATTAAATATCGCATATACGAAACTAATaatcccatgctaattattttcttgaacagatttaaaacgtaaatgaattctaatctccgttattacaacctccataatgaacgttttaaaaaaaagtccccgaaacaaaatgactgggtggaattacatcggcggaaatcaatatatatgtgaggcacacgctctatcatcaaaatggaatatgtatc
gi|11 : AA-TATGATAAGCCAAAGTTTTGAAAAAAAACAAAAATTCCACCAACG----CA------AAA---------ACGAATGTT----TTCCTTATTTGCCAAAACAGTTTTA-AAGACATATATTATCATATGTGctacac
gi|12 : TTTTAGAAGACGCATGT-ATCATATATGAT------TGTGTTTCAGAAACG-GCATGATGCTTCTACATACAAGGGAAAACATTACCATTTGAAC-TTTGATCATATATAAATATTtg
gi|13 : GC-GTGCGTTTTAA-----AAGTATTATCTAAA--TGTATTTGTGAATTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACCTTTTAAA-TATGATAGGCCAAA
gi|14 : TTCTCAGAAT-A--CAGGCACAATTAGCCTGC-AT-ACCTG-TCGCAAATATA-TCTTGC-GTTGTAG-AAAGA
gi|15 : tcaAATGCTGCCATAAAGTTTAAAATATCAAATGTCGCATATAAGAGCCTAA
gi|16 : -GT-AC-TG-TCGCAAGTATA-TCTTGC-GTTGTAG-AAc
gi|2 : TTCTCAGAAA-ATATAGGTACAATTAGCCTGC-GT-ACTTG-TTGCAAGTATA-TCTTGC-GTTGTGG-AAAGAAAAGTGTGCTTGATAAATAG---GTTGGC-ATGCGTTTTAAGTATTG-------TTTAAA--TGTATCTGTGAGTCGTT-TGT-CATT-GAAATGCATTCATGAGAAGAAAACGTTTTAAA-TATGA------AAAC----------GCCCAAAA----TACCGATGTCGCCA------ATACAGAAACAAAT----GTTCCTTTT-----TTTGTTGAAGCGCTTTCAGAAGACATATATTATCATATAT----------------------------TGATGCATCTACATACAAGGGAAAACAGTACCAATGGGACATTGGATCATATAAAATTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGTAA-CTTC--CG-AAACAGTTTTTAGTACATATATCTCAATTAATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACATGAATTTCTTAAGATCAATGTTTCAAATAT
gi|3 : tcaTTTTTTGCAGTTG---T--CGCAA---------------GTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAGGAATATTAACGTTGCATATCATCGGATAGACGTTAATTTCTTAAAATCAATATT---AATATg
gi|3 : ACCTACATAACGCG-----------AT-ATGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacctacataacgcgatatgtggtgatatagcctccatgtgaactatatactattgatttctgggtgccaaataacccttttgcaaa
gi|4 : ttttttgcagttgtcgcaagtttttagtgcatctatctcaattgataatgtaggtatgaaaggaatattaacgttgcatatcatcggatagacgttaatttcttaaaatcaatattaatattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttA-A-ATAG-CACAATTAGCCTGCCGTTACCTGATCGGA---ATT-TCTTGCAGTTGTAG-AAA----AGTATGAT-GATAAATAGTGGGTTGGC-GTT-----------TTACGTATTATTTAAAATCGTATTTGTGATTTATTACTT-CATT-GAA--GC-TTCATGAAAAG-AAACTT
gi|5 : cTTCTCAGACA-A--TAGGCACAATTAGCCTTC-AT-ACCTG-TCACAGGCATA-CCATGC-GTTGTAG-AAAGAAAGGTATGCTTAATATATAG---ATTGGC-ATGCGTTTTAA-------GCATTATTGACA--TATATTTGTGATTTATT-TTT-CATT-GAA
gi|6 : tcatttaATTTACA--TGT-TTTGTGATTTATA-TTT-CGTT-GAAATGCATTCTTGAAAAGAAAACTTTTTAAA-TGTGATAGGCCGAACTTTTGAAAAAACCCAAAA----TACCGATGTCACCAACACAGAAA---------AC------------------TTTGTCAAAGCAGTTTCAGAAGACATA
gi|7 : TTCTCAGCAGCA-ATAAGTACGACTAGC--------ACCTG-TTGCAGATTTAATCATGC-GTTGTAGTAAACACAAGTATGGT-----GCCAG---GTTGCCCGTCCGTGTTTACTATTACGTAT------AC--TGTATTTGTAATTTATT-TTTCCATTAGAAATG
gi|8 : aattaaTTCTCAGAGC-A-ATAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAAACAACGTATGGT------GCAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT------AA--TGTATTTGTAATTTATT-TTTCCATTAGAAATGCA
gi|9 : attaaTTCTCAGAGA-A--TAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAA-ACAAGTATG--TG-----CAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT-------A--TGTATTTGTAATTTATT-TTT-CATT-GAAATGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 11 22222222 22222222 111 11111 2222 11111111111111111111111111111111111111 888888888888888888888888888 1 1 333333 88888888888888 11 44444444444 1 222 222222 22222 1
lowQualScore : 5 44 3 00000000 4 2 4 1 4 4 7 1 33333333 000 5 1 3 2 9999999 55555 66 4 8 8 0 8 0 1 3 1111 3 0 11111111111111111111111111111111111111 22 3 999999999999999999999999999 3 5 222222 00000000000000 77 88 1 33333333333 5 111 1 888888 66666 1 5 1 1 1
lowQualScore : . .. . ........ . . . . . . . . ........ ... . . . . ....... ..... .. . . . . . . . . .... . . ...................................... .. . ........................... . . ...... .............. .. .. . ........... . ... . ...... ..... . . . . .
lowQualScore : 0 44 2 44444444 4 7 4 0 4 4 6 3 66666666 000 0 0 0 8 2222222 44444 11 4 9 9 8 0 8 4 2 2222 2 2 22222222222222222222222222222222222222 22 2 444444444444444444444444444 3 0 777777 77777777777777 22 00 0 55555555555 5 000 0 000000 55555 0 0 0 0 0
consensus : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA-T-C----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
Reference ( family-533 ) : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAACT-C----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
gi|1 : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAAGTATA-TCTTGC-ATTGTAG-AATGAAAAATATGCTTGATAAATAG---GTTGGC-GTTCATTTTAAGTAT-ATGTATTATTTAAA--TGTATTTGTGATTTATT-TTC-CATT-GAAATGCATTCATGAAAAGAAAACTATTAAAAATATGATGAGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ATA---------AT-----TT----TT-----TTGGTAAAAACAGTTTTAGAAGACATATATTATCATATATTATCATATATGTGTTTTTGAAA-GAGTATGATACTTCTACATACAAGGGAAAACTGTACCATTGGGAC-TTTGATCATATAAAAATATTTT-TTCACTCTTTTGCAGTTG---T--CGCAAGT-TATAGCGTAA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAATAACAAA--AAAATATTGCCATAAAGTTTTTAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACACGTGTTCTTGTACATAATGTAGCAATTATATA------ATATGGATTTCAAGATAGA-TAGTCATTTTTGGATGCCAAATAACCCTTTGGCAAA
gi|10 : GGAAATACGTTAATTTCTTAAGATCAATATTCTAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGACATAAAGTTTGAAAAATTAAATATCGCATATACGAAACTAATaatcccatgctaattattttcttgaacagatttaaaacgtaaatgaattctaatctccgttattacaacctccataatgaacgttttaaaaaaaagtccccgaaacaaaatgactgggtggaattacatcggcggaaatcaatatatatgtgaggcacacgctctatcatcaaaatggaatatgtatc
gi|11 : AA-TATGATAAGCCAAAGTTTTGAAAAAAAACAAAAATTCCACCAACG----CA------AAA---------ACGAATGTT----TTCCTTATTTGCCAAAACAGTTTTA-AAGACATATATTATCATATGTGctacac
gi|12 : TTTTAGAAGACGCATGT-ATCATATATGAT------TGTGTTTCAGAAACG-GCATGATGCTTCTACATACAAGGGAAAACATTACCATTTGAAC-TTTGATCATATATAAATATTtg
gi|13 : GC-GTGCGTTTTAA-----AAGTATTATCTAAA--TGTATTTGTGAATTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACCTTTTAAA-TATGATAGGCCAAA
gi|14 : TTCTCAGAAT-A--CAGGCACAATTAGCCTGC-AT-ACCTG-TCGCAAATATA-TCTTGC-GTTGTAG-AAAGA
gi|15 : tcaAATGCTGCCATAAAGTTTAAAATATCAAATGTCGCATATAAGAGCCTAA
gi|16 : -GT-AC-TG-TCGCAAGTATA-TCTTGC-GTTGTAG-AAc
gi|2 : TTCTCAGAAA-ATATAGGTACAATTAGCCTGC-GT-ACTTG-TTGCAAGTATA-TCTTGC-GTTGTGG-AAAGAAAAGTGTGCTTGATAAATAG---GTTGGC-ATGCGTTTTAAGTATTG-------TTTAAA--TGTATCTGTGAGTCGTT-TGT-CATT-GAAATGCATTCATGAGAAGAAAACGTTTTAAA-TATGA------AAAC----------GCCCAAAA----TACCGATGTCGCCA------ATACAGAAACAAAT----GTTCCTTTT-----TTTGTTGAAGCGCTTTCAGAAGACATATATTATCATATAT----------------------------TGATGCATCTACATACAAGGGAAAACAGTACCAATGGGACATTGGATCATATAAAATTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGTAACTTC----CG-AAACAGTTTTTAGTACATATATCTCAATTAATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACATGAATTTCTTAAGATCAATGTTTCAAATAT
gi|3 : tcaTTTTTTGCAGTTG---T--CGCAA----------------GTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAGGAATATTAACGTTGCATATCATCGGATAGACGTTAATTTCTTAAAATCAATATT---AATATg
gi|3 : ACCTACATAACGCG-----------AT-ATGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacctacataacgcgatatgtggtgatatagcctccatgtgaactatatactattgatttctgggtgccaaataacccttttgcaaa
gi|4 : ttttttgcagttgtcgcaagtttttagtgcatctatctcaattgataatgtaggtatgaaaggaatattaacgttgcatatcatcggatagacgttaatttcttaaaatcaatattaatattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttA-A-ATAG-CACAATTAGCCTGCCGTTACCTGATCGGA---ATT-TCTTGCAGTTGTAG-AAA----AGTATGAT-GATAAATAGTGGGTTGGC-GTT-----------TTACGTATTATTTAAAATCGTATTTGTGATTTATTACTT-CATT-GAA--GC-TTCATGAAAAG-AAACTT
gi|5 : cTTCTCAGACA-A--TAGGCACAATTAGCCTTC-AT-ACCTG-TCACAGGCATA-CCATGC-GTTGTAG-AAAGAAAGGTATGCTTAATATATAG---ATTGGC-ATGCGTTTTAA-------GCATTATTGACA--TATATTTGTGATTTATT-TTT-CATT-GAA
gi|6 : tcatttaATTTACA--TGT-TTTGTGATTTATA-TTT-CGTT-GAAATGCATTCTTGAAAAGAAAACTTTTTAAA-TGTGATAGGCCGAACTTTTGAAAAAACCCAAAA----TACCGATGTCACCAACACAGAAA---------AC------------------TTTGTCAAAGCAGTTTCAGAAGACATA
gi|7 : TTCTCAGCAGCA-ATAAGTACGACTAGC--------ACCTG-TTGCAGATTTAATCATGC-GTTGTAGTAAACACAAGTATGGT-----GCCAG---GTTGCCCGTCCGTGTTTACTATTACGTAT------AC--TGTATTTGTAATTTATT-TTTCCATTAGAAATG
gi|8 : aattaaTTCTCAGAGC-A-ATAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAAACAACGTATGGT------GCAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT------AA--TGTATTTGTAATTTATT-TTTCCATTAGAAATGCA
gi|9 : attaaTTCTCAGAGA-A--TAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAA-ACAAGTATG--TG-----CAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT-------A--TGTATTTGTAATTTATT-TTT-CATT-GAAATGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 11 22222222 22222222 111 11111 2222 11111111111111111111111111111111111111 888888888888888888888888888 1 1 333333 99999999999999 11 44444444444 1 222 222222 22222 1
lowQualScore : 5 44 3 00000000 4 2 4 1 4 4 7 1 33333333 000 5 1 3 2 9999999 55555 66 4 8 8 0 8 0 1 3 1111 3 0 11111111111111111111111111111111111111 22 3 999999999999999999999999999 3 5 222222 22222222222222 77 88 1 33333333333 5 111 1 888888 66666 1 5 1 1 1
lowQualScore : . .. . ........ . . . . . . . . ........ ... . . . . ....... ..... .. . . . . . . . . .... . . ...................................... .. . ........................... . . ...... .............. .. .. . ........... . ... . ...... ..... . . . . .
lowQualScore : 0 44 2 44444444 4 7 4 0 4 4 6 3 66666666 000 0 0 0 8 2222222 44444 11 4 9 9 8 0 8 4 2 2222 2 2 22222222222222222222222222222222222222 22 2 444444444444444444444444444 3 0 777777 33333333333333 22 00 0 55555555555 5 000 0 000000 55555 0 0 0 0 0
consensus : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA--TC----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
Reference ( family-533 ) : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA--TC----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
gi|1 : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAAGTATA-TCTTGC-ATTGTAG-AATGAAAAATATGCTTGATAAATAG---GTTGGC-GTTCATTTTAAGTAT-ATGTATTATTTAAA--TGTATTTGTGATTTATT-TTC-CATT-GAAATGCATTCATGAAAAGAAAACTATTAAAAATATGATGAGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ATA---------AT-----TT----TT-----TTGGTAAAAACAGTTTTAGAAGACATATATTATCATATATTATCATATATGTGTTTTTGAAA-GAGTATGATACTTCTACATACAAGGGAAAACTGTACCATTGGGAC-TTTGATCATATAAAAATATTTT-TTCACTCTTTTGCAGTTG---T--CGCAAG-TTATAGCGTAA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAATAACAAA--AAAATATTGCCATAAAGTTTTTAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACACGTGTTCTTGTACATAATGTAGCAATTATATA------ATATGGATTTCAAGATAGA-TAGTCATTTTTGGATGCCAAATAACCCTTTGGCAAA
gi|10 : GGAAATACGTTAATTTCTTAAGATCAATATTCTAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGACATAAAGTTTGAAAAATTAAATATCGCATATACGAAACTAATaatcccatgctaattattttcttgaacagatttaaaacgtaaatgaattctaatctccgttattacaacctccataatgaacgttttaaaaaaaagtccccgaaacaaaatgactgggtggaattacatcggcggaaatcaatatatatgtgaggcacacgctctatcatcaaaatggaatatgtatc
gi|11 : AA-TATGATAAGCCAAAGTTTTGAAAAAAAACAAAAATTCCACCAACG----CA------AAA---------ACGAATGTT----TTCCTTATTTGCCAAAACAGTTTTA-AAGACATATATTATCATATGTGctacac
gi|12 : TTTTAGAAGACGCATGT-ATCATATATGAT------TGTGTTTCAGAAACG-GCATGATGCTTCTACATACAAGGGAAAACATTACCATTTGAAC-TTTGATCATATATAAATATTtg
gi|13 : GC-GTGCGTTTTAA-----AAGTATTATCTAAA--TGTATTTGTGAATTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACCTTTTAAA-TATGATAGGCCAAA
gi|14 : TTCTCAGAAT-A--CAGGCACAATTAGCCTGC-AT-ACCTG-TCGCAAATATA-TCTTGC-GTTGTAG-AAAGA
gi|15 : tcaAATGCTGCCATAAAGTTTAAAATATCAAATGTCGCATATAAGAGCCTAA
gi|16 : -GT-AC-TG-TCGCAAGTATA-TCTTGC-GTTGTAG-AAc
gi|2 : TTCTCAGAAA-ATATAGGTACAATTAGCCTGC-GT-ACTTG-TTGCAAGTATA-TCTTGC-GTTGTGG-AAAGAAAAGTGTGCTTGATAAATAG---GTTGGC-ATGCGTTTTAAGTATTG-------TTTAAA--TGTATCTGTGAGTCGTT-TGT-CATT-GAAATGCATTCATGAGAAGAAAACGTTTTAAA-TATGA------AAAC----------GCCCAAAA----TACCGATGTCGCCA------ATACAGAAACAAAT----GTTCCTTTT-----TTTGTTGAAGCGCTTTCAGAAGACATATATTATCATATAT----------------------------TGATGCATCTACATACAAGGGAAAACAGTACCAATGGGACATTGGATCATATAAAATTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGTAACTTC----CG-AAACAGTTTTTAGTACATATATCTCAATTAATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACATGAATTTCTTAAGATCAATGTTTCAAATAT
gi|3 : tcaTTTTTTGCAGTTG---T--CGCAA----------------GTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAGGAATATTAACGTTGCATATCATCGGATAGACGTTAATTTCTTAAAATCAATATT---AATATg
gi|3 : ACCTACATAACGCG-----------AT-ATGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacctacataacgcgatatgtggtgatatagcctccatgtgaactatatactattgatttctgggtgccaaataacccttttgcaaa
gi|4 : ttttttgcagttgtcgcaagtttttagtgcatctatctcaattgataatgtaggtatgaaaggaatattaacgttgcatatcatcggatagacgttaatttcttaaaatcaatattaatattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttA-A-ATAG-CACAATTAGCCTGCCGTTACCTGATCGGA---ATT-TCTTGCAGTTGTAG-AAA----AGTATGAT-GATAAATAGTGGGTTGGC-GTT-----------TTACGTATTATTTAAAATCGTATTTGTGATTTATTACTT-CATT-GAA--GC-TTCATGAAAAG-AAACTT
gi|5 : cTTCTCAGACA-A--TAGGCACAATTAGCCTTC-AT-ACCTG-TCACAGGCATA-CCATGC-GTTGTAG-AAAGAAAGGTATGCTTAATATATAG---ATTGGC-ATGCGTTTTAA-------GCATTATTGACA--TATATTTGTGATTTATT-TTT-CATT-GAA
gi|6 : tcatttaATTTACA--TGT-TTTGTGATTTATA-TTT-CGTT-GAAATGCATTCTTGAAAAGAAAACTTTTTAAA-TGTGATAGGCCGAACTTTTGAAAAAACCCAAAA----TACCGATGTCACCAACACAGAAA---------AC------------------TTTGTCAAAGCAGTTTCAGAAGACATA
gi|7 : TTCTCAGCAGCA-ATAAGTACGACTAGC--------ACCTG-TTGCAGATTTAATCATGC-GTTGTAGTAAACACAAGTATGGT-----GCCAG---GTTGCCCGTCCGTGTTTACTATTACGTAT------AC--TGTATTTGTAATTTATT-TTTCCATTAGAAATG
gi|8 : aattaaTTCTCAGAGC-A-ATAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAAACAACGTATGGT------GCAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT------AA--TGTATTTGTAATTTATT-TTTCCATTAGAAATGCA
gi|9 : attaaTTCTCAGAGA-A--TAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAA-ACAAGTATG--TG-----CAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT-------A--TGTATTTGTAATTTATT-TTT-CATT-GAAATGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 11 22222222 22222222 111 11111 2222 11111111111111111111111111111111111111 888888888888888888888888888 1 1 333333 99999999999999 11 44444444444 1 222 222222 22222 1
lowQualScore : 5 44 3 00000000 4 2 4 1 4 4 7 1 33333333 000 5 1 3 2 9999999 55555 66 4 8 8 0 8 0 1 3 1111 3 0 11111111111111111111111111111111111111 22 3 999999999999999999999999999 3 5 222222 22222222222222 77 88 1 33333333333 5 111 1 888888 66666 1 5 1 1 1
lowQualScore : . .. . ........ . . . . . . . . ........ ... . . . . ....... ..... .. . . . . . . . . .... . . ...................................... .. . ........................... . . ...... .............. .. .. . ........... . ... . ...... ..... . . . . .
lowQualScore : 0 44 2 44444444 4 7 4 0 4 4 6 3 66666666 000 0 0 0 8 2222222 44444 11 4 9 9 8 0 8 4 2 2222 2 2 22222222222222222222222222222222222222 22 2 444444444444444444444444444 3 0 777777 33333333333333 22 00 0 55555555555 5 000 0 000000 55555 0 0 0 0 0
consensus : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA--TC----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
Reference ( family-533 ) : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA--TC----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
gi|1 : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAAGTATA-TCTTGC-ATTGTAG-AATGAAAAATATGCTTGATAAATAG---GTTGGC-GTTCATTTTAAGTAT-ATGTATTATTTAAA--TGTATTTGTGATTTATT-TTC-CATT-GAAATGCATTCATGAAAAGAAAACTATTAAAAATATGATGAGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ATA---------AT-----TT----TT-----TTGGTAAAAACAGTTTTAGAAGACATATATTATCATATATTATCATATATGTGTTTTTGAAA-GAGTATGATACTTCTACATACAAGGGAAAACTGTACCATTGGGAC-TTTGATCATATAAAAATATTTT-TTCACTCTTTTGCAGTTG---T--CGCAAG-TTATAGCGTAA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAATAACAAA--AAAATATTGCCATAAAGTTTTTAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACACGTGTTCTTGTACATAATGTAGCAATTATATA------ATATGGATTTCAAGATAGA-TAGTCATTTTTGGATGCCAAATAACCCTTTGGCAAA
gi|10 : GGAAATACGTTAATTTCTTAAGATCAATATTCTAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGACATAAAGTTTGAAAAATTAAATATCGCATATACGAAACTAATaatcccatgctaattattttcttgaacagatttaaaacgtaaatgaattctaatctccgttattacaacctccataatgaacgttttaaaaaaaagtccccgaaacaaaatgactgggtggaattacatcggcggaaatcaatatatatgtgaggcacacgctctatcatcaaaatggaatatgtatc
gi|11 : AA-TATGATAAGCCAAAGTTTTGAAAAAAAACAAAAATTCCACCAACG----CA------AAA---------ACGAATGTT----TTCCTTATTTGCCAAAACAGTTTTA-AAGACATATATTATCATATGTGctacac
gi|12 : TTTTAGAAGACGCATGT-ATCATATATGAT------TGTGTTTCAGAAACG-GCATGATGCTTCTACATACAAGGGAAAACATTACCATTTGAAC-TTTGATCATATATAAATATTtg
gi|13 : GC-GTGCGTTTTAA-----AAGTATTATCTAAA--TGTATTTGTGAATTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACCTTTTAAA-TATGATAGGCCAAA
gi|14 : TTCTCAGAAT-A--CAGGCACAATTAGCCTGC-AT-ACCTG-TCGCAAATATA-TCTTGC-GTTGTAG-AAAGA
gi|15 : tcaAATGCTGCCATAAAGTTTAAAATATCAAATGTCGCATATAAGAGCCTAA
gi|16 : -GT-AC-TG-TCGCAAGTATA-TCTTGC-GTTGTAG-AAc
gi|2 : TTCTCAGAAA-ATATAGGTACAATTAGCCTGC-GT-ACTTG-TTGCAAGTATA-TCTTGC-GTTGTGG-AAAGAAAAGTGTGCTTGATAAATAG---GTTGGC-ATGCGTTTTAAGTATTG-------TTTAAA--TGTATCTGTGAGTCGTT-TGT-CATT-GAAATGCATTCATGAGAAGAAAACGTTTTAAA-TATGA------AAAC----------GCCCAAAA----TACCGATGTCGCCA------ATACAGAAACAAAT----GTTCCTTTT-----TTTGTTGAAGCGCTTTCAGAAGACATATATTATCATATAT----------------------------TGATGCATCTACATACAAGGGAAAACAGTACCAATGGGACATTGGATCATATAAAATTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGTAACTTC----CG-AAACAGTTTTTAGTACATATATCTCAATTAATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACATGAATTTCTTAAGATCAATGTTTCAAATAT
gi|3 : tcaTTTTTTGCAGTTG---T--CGCAA----------------GTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAGGAATATTAACGTTGCATATCATCGGATAGACGTTAATTTCTTAAAATCAATATT---AATATg
gi|3 : ACCTACATAACGCG-----------AT-ATGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacctacataacgcgatatgtggtgatatagcctccatgtgaactatatactattgatttctgggtgccaaataacccttttgcaaa
gi|4 : ttttttgcagttgtcgcaagtttttagtgcatctatctcaattgataatgtaggtatgaaaggaatattaacgttgcatatcatcggatagacgttaatttcttaaaatcaatattaatattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttA-A-ATAG-CACAATTAGCCTGCCGTTACCTGATCGGA---ATT-TCTTGCAGTTGTAG-AAA----AGTATGAT-GATAAATAGTGGGTTGGC-GTT-----------TTACGTATTATTTAAAATCGTATTTGTGATTTATTACTT-CATT-GAA--GC-TTCATGAAAAG-AAACTT
gi|5 : cTTCTCAGACA-A--TAGGCACAATTAGCCTTC-AT-ACCTG-TCACAGGCATA-CCATGC-GTTGTAG-AAAGAAAGGTATGCTTAATATATAG---ATTGGC-ATGCGTTTTAA-------GCATTATTGACA--TATATTTGTGATTTATT-TTT-CATT-GAA
gi|6 : tcatttaATTTACA--TGT-TTTGTGATTTATA-TTT-CGTT-GAAATGCATTCTTGAAAAGAAAACTTTTTAAA-TGTGATAGGCCGAACTTTTGAAAAAACCCAAAA----TACCGATGTCACCAACACAGAAA---------AC------------------TTTGTCAAAGCAGTTTCAGAAGACATA
gi|7 : TTCTCAGCAGCA-ATAAGTACGACTAGC--------ACCTG-TTGCAGATTTAATCATGC-GTTGTAGTAAACACAAGTATGGT-----GCCAG---GTTGCCCGTCCGTGTTTACTATTACGTAT------AC--TGTATTTGTAATTTATT-TTTCCATTAGAAATG
gi|8 : aattaaTTCTCAGAGC-A-ATAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAAACAACGTATGGT------GCAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT------AA--TGTATTTGTAATTTATT-TTTCCATTAGAAATGCA
gi|9 : attaaTTCTCAGAGA-A--TAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAA-ACAAGTATG--TG-----CAG---GTTGCC-GTCCGTGTTTAGTATTACGTAT-------A--TGTATTTGTAATTTATT-TTT-CATT-GAAATGCAT
blockSeqs : C TA A CTGCCGTT A A A T A T G A CTTGATAA TGG C G T A CTATTAC TATCT AT A C A . A T ATTC T ATACAGAAACAAATGTTCCTTTT CA T GATTGTGTTTCAGAAACGGC A G ATCTAG CTTCCGAAA CT AC G . . . G GCCTCC . T C T G T
blockSeqs : . A A CTGCAT . A . T . . G A CTTAATAT . . G T A GTATTAC TATTT . . C A . G T . T AAAACGAATGTTTTCCTTA TG T . . T . TC A
blockSeqs : . A A CTGCGT . A . T . . G C ATGATAA . . T T A GTATTAC TATTG . . . . . G . . . ACACAGAAAAC CA . .
blockSeqs : . A A CTTCAT . G . T . . C A GTG . . G G T GTATTG TTT . . . . . .
blockSeqs : . . A . . G . A . . A C GT . . C G T TTAC . . . . .
blockSeqs : . . . . . G . A . . . . TG . . C G T AA . . . . .
blockSeqs : . . . . . G . A . . . . C . . . . . . . .
blockSeqs : . . . A . . . . . .
blockSeqCons : GTTGATA* TATTAC*
originalCons : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATAAACAG---GTTGGC-GTNCGTTTTNAGTATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA--TC----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
finalCons : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGGTTGATA-ACAG---GTTGGC-GTNCGTTTTNATATTAC-GTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA--TC----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 11 22222222 5555555555555 1 3333333 11111 2222 11111111111111111111111111111111111111 888888888888888888888888888 1 1 333333 99999999999999 11 44444444444 1 222 222222 22222 1
lowQualScore : 5 44 3 00000000 4 2 4 1 4 4 7 1 1111111111111 5 1 0 2222222 1 11111 66 4 8 8 0 8 0 1 3 1111 3 0 11111111111111111111111111111111111111 22 3 999999999999999999999999999 3 5 222222 22222222222222 77 88 1 33333333333 5 111 1 888888 66666 1 5 1 1 1
lowQualScore : . .. . ........ . . . . . . . . ............. . . . ....... . ..... .. . . . . . . . . .... . . ...................................... .. . ........................... . . ...... .............. .. .. . ........... . ... . ...... ..... . . . . .
lowQualScore : 0 44 2 44444444 4 7 4 0 4 4 6 3 4444444444444 0 0 0 0000000 4 44444 11 4 9 9 8 0 8 4 2 2222 2 2 22222222222222222222222222222222222222 22 2 444444444444444444444444444 3 0 777777 33333333333333 22 00 0 55555555555 5 000 0 000000 55555 0 0 0 0 0
consensus : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGNTTGATA-AA---CAGGTTGGC-GTNCGT-TTTAA-TATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA--TC----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
Reference ( family-533 ) : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAGGTATA-TCNTGC-GTTGTAG-AAAGAAAAGTATGGTTGATA-A----CAGGTTGGC-GTNCGT-TTTNA-TATTACGTATTATTTAAA--TGTATTTGTGATTTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACTTTTTAAA-TATGATAGGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ANA---------AC----GTT----TT-----TTTGTCGAAGCAGTTTTAGAAGACATATATTATCATATATGAT------TGTGTTTC-GAAA-G-GCATGATGCTTCTACATACAAGGGAAAACAGTACCATTGGGAC-TTTGATCATATAAAAATATTTTGTTCACTCTTTTGCAGTTG---T--CGCAA--TC----CG-AA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAGTGACAAAACAAAATGCTGCCATAAAGTTTNAAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACGCGTGTTCTTGTACATAATGTGGCAATNATATAGCCTCCATGTGGACTTCAAGATANACTANTNATTTCTGGGTGCCAAATAACCCTTTNGCAAA
gi|1 : TTCTCAGAAA-A-ATAGGCACAATTAGCCTGC-GT-ACCTG-TCGCAAGTATA-TCTTGC-ATTGTAG-AATGAAAAATATGCTTGATA-AA---TAGGTTGGC-GTTCAT-TTTAAGTAT-ATGTATTATTTAAA--TGTATTTGTGATTTATT-TTC-CATT-GAAATGCATTCATGAAAAGAAAACTATTAAAAATATGATGAGCCAAACTTTTGAAAAAGCCCAAAA----TACCGATGTCGCCA------ATA---------AT-----TT----TT-----TTGGTAAAAACAGTTTTAGAAGACATATATTATCATATATTATCATATATGTGTTTTTGAAA-GAGTATGATACTTCTACATACAAGGGAAAACTGTACCATTGGGAC-TTTGATCATATAAAAATATTTT-TTCACTCTTTTGCAGTTG---T--CGCAAG-TTATAGCGTAA-CAGTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACGTTAATTTCTTAAGATCAATATTTCAAATATCGGGAAAATGTCAAATAACAAA--AAAATATTGCCATAAAGTTTTTAAAATTAAATGTCGCATATAAGAACCTAATAGGTTATAACCTACATAACACGTGTTCTTGTACATAATGTAGCAATTATATA------ATATGGATTTCAAGATAGA-TAGTCATTTTTGGATGCCAAATAACCCTTTGGCAAA
gi|10 : GGAAATACGTTAATTTCTTAAGATCAATATTCTAAATATCAGGAAAATGTCAAGTGACAAAACAAAATGCTGACATAAAGTTTGAAAAATTAAATATCGCATATACGAAACTAATaatcccatgctaattattttcttgaacagatttaaaacgtaaatgaattctaatctccgttattacaacctccataatgaacgttttaaaaaaaagtccccgaaacaaaatgactgggtggaattacatcggcggaaatcaatatatatgtgaggcacacgctctatcatcaaaatggaatatgtatc
gi|11 : AA-TATGATAAGCCAAAGTTTTGAAAAAAAACAAAAATTCCACCAACG----CA------AAA---------ACGAATGTT----TTCCTTATTTGCCAAAACAGTTTTA-AAGACATATATTATCATATGTGctacac
gi|12 : TTTTAGAAGACGCATGT-ATCATATATGAT------TGTGTTTCAGAAACG-GCATGATGCTTCTACATACAAGGGAAAACATTACCATTTGAAC-TTTGATCATATATAAATATTtg
gi|13 : GC-GTGCGT-TTTAA-----AAGTATTATCTAAA--TGTATTTGTGAATTATT-TTT-CATT-GAAATGCATTCATGAAAAGAAAACCTTTTAAA-TATGATAGGCCAAA
gi|14 : TTCTCAGAAT-A--CAGGCACAATTAGCCTGC-AT-ACCTG-TCGCAAATATA-TCTTGC-GTTGTAG-AAAGA
gi|15 : tcaAATGCTGCCATAAAGTTTAAAATATCAAATGTCGCATATAAGAGCCTAA
gi|16 : -GT-AC-TG-TCGCAAGTATA-TCTTGC-GTTGTAG-AAc
gi|2 : TTCTCAGAAA-ATATAGGTACAATTAGCCTGC-GT-ACTTG-TTGCAAGTATA-TCTTGC-GTTGTGG-AAAGAAAAGTGTGCTTGATA-AA---TAGGTTGGC-ATGCGT-TTTAA-------GTATTGTTTAAA--TGTATCTGTGAGTCGTT-TGT-CATT-GAAATGCATTCATGAGAAGAAAACGTTTTAAA-TATGA------AAAC----------GCCCAAAA----TACCGATGTCGCCA------ATACAGAAACAAAT----GTTCCTTTT-----TTTGTTGAAGCGCTTTCAGAAGACATATATTATCATATAT----------------------------TGATGCATCTACATACAAGGGAAAACAGTACCAATGGGACATTGGATCATATAAAATTATTTTGTTCACTCGTTTGCAGTTGATCTAGCGTAACTTC----CG-AAACAGTTTTTAGTACATATATCTCAATTAATAATGTAGGTATGAAAAGAATATGAAAGTTGTATATCATCGGAAATACATGAATTTCTTAAGATCAATGTTTCAAATAT
gi|3 : tcaTTTTTTGCAGTTG---T--CGCAA----------------GTTTTTAGTGCATCTATCTCAATTGATAATGTAGGTATGAAAGGAATATTAACGTTGCATATCATCGGATAGACGTTAATTTCTTAAAATCAATATT---AATATg
gi|3 : ACCTACATAACGCG-----------AT-ATGTGG---TGATATAGCCTCCATGTGAACT-----ATATACTATTGATTTCTGGGTGCCAAATAACCCTTTTGCAAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttacctacataacgcgatatgtggtgatatagcctccatgtgaactatatactattgatttctgggtgccaaataacccttttgcaaa
gi|4 : ttttttgcagttgtcgcaagtttttagtgcatctatctcaattgataatgtaggtatgaaaggaatattaacgttgcatatcatcggatagacgttaatttcttaaaatcaatattaatattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttA-A-ATAG-CACAATTAGCCTGCCGTTACCTGATCGGA---ATT-TCTTGCAGTTGTAG-AAA----AGTATGAT-GATA-AATAGTGGGTTGGC-GTT------------TTACGTATTATTTAAAATCGTATTTGTGATTTATTACTT-CATT-GAA--GC-TTCATGAAAAG-AAACTT
gi|5 : cTTCTCAGACA-A--TAGGCACAATTAGCCTTC-AT-ACCTG-TCACAGGCATA-CCATGC-GTTGTAG-AAAGAAAGGTATGCTTAATATA----TAGATTGGC-ATGCGT-TTTAA-------GCATTATTGACA--TATATTTGTGATTTATT-TTT-CATT-GAA
gi|6 : tcatttaATTTACA--TGT-TTTGTGATTTATA-TTT-CGTT-GAAATGCATTCTTGAAAAGAAAACTTTTTAAA-TGTGATAGGCCGAACTTTTGAAAAAACCCAAAA----TACCGATGTCACCAACACAGAAA---------AC------------------TTTGTCAAAGCAGTTTCAGAAGACATA
gi|7 : TTCTCAGCAGCA-ATAAGTACGACTAGC--------ACCTG-TTGCAGATTTAATCATGC-GTTGTAGTAAACACAAGTATGGT----G-C----CAGGTTGCCCGTCCGT-GTTTACTATTACGTAT------AC--TGTATTTGTAATTTATT-TTTCCATTAGAAATG
gi|8 : aattaaTTCTCAGAGC-A-ATAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAAACAACGTATGGT------G----CAGGTTGCC-GTCCGTGTTTAG-TATTACGTAT------AA--TGTATTTGTAATTTATT-TTTCCATTAGAAATGCA
gi|9 : attaaTTCTCAGAGA-A--TAGGTACA-CTAGC--------ACCTG-TTGCAGATTTA-TCATGC-GTTGTAG-TAA-ACAAGTATG--TG---------CAGGTTGCC-GTCCGTGTTTAG-TATTACGTAT-------A--TGTATTTGTAATTTATT-TTT-CATT-GAAATGCAT