lowQualScore : 1 222222222222222222222222 22222222222222 11 44444444444444444444444444444444444444444444 11 33333 1111 22222222 1111111 1 1111 11111111111111 33333333333 8888888888888 111111 4444 11 3333 111 333333333333 11111 1 444444 1111 1111 11111111 11 555555555555555555555555555555 22222222 1111
lowQualScore : 7 5 999999999999999999999999 2 0 33333333333333 44 0 888 4 77777777777777777777777777777777777777777777 4 4 4 3 2 444 3 3 2 5 55 33333 3 1111 0 00000000 7 3 44 1 4444444 77 3 8 0000 3 6 00000000000000 3 0 77 55555555555 5 1 11 2 33 6 1111111111111 0 3 3 3 3 3 888888 3 1 5 1111 66 66 5 99 5555 888 4 55 4 7777 3 3 3 555 3 44 3 444444444444 11111 99 3 3 2 222222 55 44 3 0 1111 2 2 5 3333 8888 33 222 2 55 2 22222222 0 2 1 88 3 3 3 9999 3 5 6 333333333333333333333333333333 11111111 3 9999 55 4
lowQualScore : . . ........................ . . .............. .. . ... . ............................................ . . . . . ... . . . . .. ..... . .... . ........ . . .. . ....... .. . . .... . . .............. . . .. ........... . . .. . .. . ............. . . . . . . ...... . . . .... .. .. . .. .... ... . .. . .... . . . ... . .. . ............ ..... .. . . . ...... .. .. . . .... . . . .... .... .. ... . .. . ........ . . . .. . . . .... . . . .............................. ........ . .... .. .
lowQualScore : 0 7 888888888888888888888888 2 7 55555555555555 44 5 888 7 66666666666666666666666666666666666666666666 0 0 0 0 0 555 1 0 9 3 55 44444 6 3333 5 00000000 7 3 66 0 2222222 88 1 5 8888 3 7 11111111111111 1 4 33 11111111111 1 5 00 7 77 0 3333333333333 5 1 1 1 3 3 444444 3 5 3 7777 55 99 0 00 0000 000 0 55 0 7777 3 3 3 888 3 66 3 222222222222 77777 33 3 1 7 444444 55 66 5 9 8888 5 5 5 4444 1111 22 555 4 44 7 33333333 9 9 4 11 3 3 3 6666 1 7 3 111111111111111111111111111111 77777777 6 4444 55 0
consensus : GTTAACATG-TCTN---C---ATATTTTT-T-TA---AATTTTGTTTT--------------CCAT-CCAGACGTCTAT--NANATGCCATGATGGGG----------GG-GGA--GGG--GG--GNGGGG-----G---T-AACA-TGT-CTTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTC-TA-TCAT-ATGCCATGNTGGTGA-AAAT-GAAGT-TTTG--AGGAAACAA-G--GGAAAAGCTGC-------TANAGGTAAAC-AAATTATATACAC-TG-TA-ATAAAA--T--A-A--T-AAAAGGTAG--AT----A--TA--ACATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAATATCCAGA----CA-GAAATAT-TAGAATC-ATG-ATCTACAAT-A-AA-----TTCTC-AAATTANACTT-ATTTT--ATT--G-TG-ATTATGA-TTTT---T-TA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CC------------TAC-----GG-CAACTGAAAG-CAGC-ATAGATTTAATT--AA-CATTGCGAA--ATACCTGAAATATA-CCCC-T-GAAAGAGCTGGAGGAGGA---GG--TGGC-C-G-AAGGC-TTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG----G-AA-AAA--T--ATTCT-AATA-TACTAG--TAATCAATCTTGAC----NG--GAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
Reference ( gi|1 ) : GTAAACATG-TCTG---C---ATATTTTT-T-TA---AATTTTGTTTT--------------CCAT-ACAGACGTTTAT--AAAATGCCATGATGGGGT---------GG-GGA--GGG--AG--GTGGGG-----G---T-AACA-TGT-CTTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTC-TA-TCAA-ATGCCAAGTTCGTGA-AAAT-GAAGT-GTTG--GGGAAATAA-G--GGAAAAGCTGC-------TAAAGGTAAAC-ATATTATATACAC-TG-TA-ATAAAA--T--A-A--T-AAAAGGTAG--AT----A--TC--ACATTTTATTTAAAATGAAATTGCTA-ATGAGATATT--ATGGAAAATATCCAGATTTGCA-GAAATAT-TAGAATC-ATG-ATCTACAAT-A-AC-----TTCTC-AAATTAAACCTCATTTT--ATT--G-TG-GTTATGG-CATT---T-TA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CC------------TAT-----GG-TAACTGAAAG-CAGC-ATAGATTTATTTC-AA-CATTGTGAA--ATACCTGAAATATA-TCCC-T-GAAAGAACTGGAGGAGGA---GG--TGGC-T-G-AAGGT-TTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG----G-AA-AGA--T--ATTTC-AATA-TACTAG--CAATCAATCTTGAC----AG--GAGAAAA-TTATAT-GTTAGGGTA--A-ATGAATGT
gi|29 : GTTAACATG-TCTT---CTTAACATTCATAT-TC---GATTTTATTTT--------------CCAT-CCAGACGTCTAC--TGTATGCCAT
gi|2 : aaaatgccatgatggggtggtggaggggggaggggaAGCATGGTCT----C---ATATTTTT-T-GA---ATTTTTTTTTTCGTTTATCAAAATGCCATGATNNNNNNNNNN--NNNNNNNNNNNNNNNNNN---------NN-NNN--NNN--NN--NNNNNN-----N---TTAACAAGGT-CTTCTTTAACTTTCATATT--------GTTTTCCA-TACAGA-----TAGTCAT-ATGCCATGTG-GTGA-AAAG-AAAGT-TTTA--AGGAAACAA-G--GGAAAAGCTGC-------TAAAAGTAAAC-AAATTATATACAC-TG-TA-AT-AAA--T--G-A--T-AAAAGATAG--AT----AACTA--ACATTTTATTTAAAAGGAAATTGCTA-ATGAGATATA--ATGAAAAATATC--------CA-GAAATAT-TAGGATC-ATG-ATCTACAAT-A-AA-----TTCTC-AAATTAAAC----TTTTAAATT--G-TG-ATTCTG---ATTTG-T-TA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTACATGTACATGTAT-----GG-CAACTGAAAA-CAGC-ATAGATTTAATTC-AA-TATTGTGAA--ATAC--------------C-T-GAAAGAATTGGAGGAGGA---GG--TGGC-T-G-AAGGT-TTTGTG-T--------TTG-AAAAAA-ATTCTGTTGT-AACCGTT-GACA-ATCCTTG----G-AAGAAA--T--ATTCT-GA------TAA--TAATCAATCTTGAC----TG--GAGAAAA-TTATCT-GTTAGGGTA--T-ATGAATGT
gi|3 : tgtAGCATG-TCT----C---ATATTTTT-T-GA---GATTTTCTTTT--------------TC---------GTTTATTCAAAATGCCATGATGGGGGAGGGGGAGGGG-GGA--GGGGAAG--GAGGGG-----GGGTT-AACA-AGT-CTTCTT-TACATTCATA--------TTGTTTT-CA-TACAGA---C-TA--CAT-ATGCCATG-TGGTAA-AGA---AAGT-TTTA--AGGAAACAA-G--GGAAAAG-TGC-------TAAAAGTAAACAAAATTATATACAC-TG-TA-AT-AAA--T--G-A--T-AAAAGATAGA-AT----A--ACAAACATAT--TTTAAAA-GGAATTGCTACAT-AGATATA--ATGAAAAATATCCAG----------AATCT-TAGGATC-ATG-ATCTACAAT-A-AA-----TTCTC-AAATT-AACTTAA------ATT--GCTG-ATTCTG---ATTTG-T-TA--TTG-A-TT----TAG-AATG-TGTACTTCGCTA---GC----GTACCTACATGTACATGTAT-----GGCCAACTGAAAA-CAGC-ATAGATTTAATT---A-TATTGTGAA--ATAC--------------C-T-GAAAAAATTGGA-GAGGA---GGTTTGGC-T-GAAAGGT-TTTGTGTT--------TTG--AAAAA-ATTCTGTTGT-AAC--TT-GACA-ATCCTTG----G-AAGAAA--T--ATTCT-GATA-----AG---AATC-ATCTT-AT-----G--GAGAAAA-TTATCT-GTTAGGGTATTATATGAATGTtg
gi|8 : tgtAACATG-TCTG---------ATTGTC-T------GATTTTGTTTT--------------CCAT-CCAGGTGTTTAT--AAAATGCCATGA----------------G-GGA--GGA--GG--GGGGGG-----G-------CA-TGT-CTTCTG-AATTTTCACATTTA-ATTTTCTTTTCCA-CCTAGATGTC-TA-TCAT-ATACCATGATGGTGA-AA----------------GAAAACAA-A--GGAAAAGTTGC-------TTTTGGTAAAC-AAATTATATAGAG-TG-CA-ATAAAA--------------------G--AT-------TA--ACATTTTATTCAAAATAAAATCACTA-ACGTGATATC--ATGAAAAATATC--------CA-GAAATAC-TAGAATC-ATG-ATCTACAtgtg
gi|32 : tggttgtAACATG-TCTT---C---TTAACTTT-TATATCTAATTTTGTTTT--------------CCAT-CCAGACATCTAT--CATATGCCATG
gi|22 : acgtttataaaatgccatgatgggggttgggggtAACATA-TCTT---C---TTAATTTT-CATAGTTAATTTTGTTTT--------------CCAT-CCAGGTGTTTTT--TAAATTTCAT--TGGGGG---------GG-GGG--GGG--tt
gi|41 : ttatatcaattgaggcagattgtgtaaagatttttattatttttatgtggtggtgtttgtTG-TTTGTAAC---ATATCGTC-T-TA---ATTTTTAATTT--------------CCAC-TCAGACGTCTAT--CATATGCCATGATGGgcttgtcttct
gi|4 : G---C---ACTTCTTC-T-TA---A------TTTT--------------CCAT-CCAGGCGTT-AT--AACATGACATGAAGGGG---------------A---------------GG-----G---T-AGAA-TGTCCTTCTT-AATTTTCATGTTAG-ATTTTG---TCCA-ACCAGACGTCTTA-TCAATATGCTATGATGGTGATAAAT--AAGT-TGTG--ATTGAACAA-A--GGAAAAGCTGCCCCATTTTA---GTAAAC-AAATTATATA-----A-TA-AAAAGG--T--ACAT-T-AAGAGATA---CT----AG-TA--ACATTTAATGCAAAATAAAATCGCTA-ACGGGATATT--ATGAAAGAAATC--------CA-GAAATAT-TAGAATC-ATG-ATGTACAAT-A-AA-----TTCTG-AAAGTATACTT--TTTA--ATT--G-TG-ATTATGA-TTTT---T-TA--TTG-ACTT----TAT-AATG-TGTTCTTC-CTA---TC-A--GT-AC------------TAT-----GG-t
gi|20 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttagggggtgtatgtgtggtggtagta---C---ATATTT----------AATTTTGTTTT--------------CCAT-AAAGTCGTATAT--CATATGCCATGGTGG
gi|9 : ttTTTGTTTT--------------TCAT-CCAGACGTCTAT--CATTTGCCATGATAGtgaaatgaagttttgaggaaagaagggaaaagctgataaaggtaaacagattatatacacagtaatagaataataaaaggtagatataacattttattta
gi|32 : ACGTTTAT--AAAATGCCATGATGGGG------------------------G--TTGGGG-----G---T-AACA-TGT-CTTCTT-AACTTTTATATCTA-ATTTTGTTTTCCA-TCCAGACATC-TA-TCAT-ATGCCATGTTtgaaaatgaaattgataggaaacaagggaaaggctgctttaggtattaaagccacttgtatatataatgcgattgaaggtagatatataacatattcaaaataaaatcgctgatgagatattatgaaaaatatccagaaatgcgtagaatcattatatactatatactagtattctcaaattacacttttaga
gi|29 : --AAAATGCCATGATGGGGT---------GGTGGA--GGG--GG--GAGGGG-----AGT-T-AACA-TGT-CTTCTT-AACATTCATATTCG-ATTTTATTTTCCA-TCCAGACGTC-TA-CTGT-ATGCCA
gi|24 : T---------GG-GGATAGGG--GG--GGGGAG-----G---TTAACA-TGT-ATTCTC-AATTATCTTATTTG-ATTTTGTTTTTCA-TTCAGACTT--------G-ATG--------GAGA-ACAT-GAATT-TCAA--AGGACACAA-G--GGAAAAG-TGCG------TTTGGCTAAAC-A-ATTCTATt
gi|5 : gtgttttttcttGG--GGG--AGTCGTGGAGTAGTTA---T-AACA-TGT-CTTCCT-AA---------TTACATTTTGTTTTCCAGTCCAGAAAGC-AAGTGAT-ATGCCATATGC---A-AAATCGAAATTGTGG--AAGAAAAAACGATGGAAAAACTGC-------TTTAGGTAAAC-A----A-ATACA--TA-TG-ATGC----C--A-A--T-AAAAGGTAG--ATT---A--TA--ACATTT------------AATCGCTA-CTGAGATATC--AAAAAAAA-----AAATATTCA-GAAATAT-TA-AATC-ATG-ATCTACAAT-A-GA-----TTCTC-AAAT------CCACTTTAAATA--G-TG-ATTATAA-TATT---TGTA--TTGAATTTTGTATAGTAGTGATGTACTTG-CGATTTGC-A--GT-CG------------TAC------G-CAACTGAAAG-CAAC---AGA--TATTTCTAATTATTGCAAAGGATACCT--AATA-A-ACCC-T-GAAAAAGCC---GAAGGA---GT--TGGC-C-A-AAGGC-TTg
gi|22 : cataacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggaaaatttgatgcattactgtgtaaagaaattgtttacG--GTGGTGTTT--G---T-AACA-TAT-CTTCTT-AATTTTCATAGTTA-ATTTTGTTTTCCA-TCCAGGTGTT-TT-TTAA-ATaagttcatgcaaaataacatgta
gi|41 : ttatatcaattgaggcagattgtgtaaagatttttattatttttatgt-----G---T-AACA-TAT-CGTCTT-AATTTT------TA-ATTT------CCA-CTCAGACGTC-TA-TCAT-ATGCCAttcattggggggggggggggcttgtcttct
gi|20 : tgtttTTCATATTTA-ATTTTGTTTTCCA-TAAAGTCGTA-TA-TCAT-ATGCCATGGTGGTGA-AA-T-GAAGT-TTTG--AGGAAAGAA-G--GGAAAAGCTGA-------TAAAGGTAAAC-AGATTATATACAC-AG-TA-ATAGAA--T--A-A--T-AAAAGGTAG--AT----A--TA--ACATTTTATTTAtgatggt
gi|9 : TTTGTTTTTCA-TCCAGACGTC-TA-TCAT-TTGCCATGATAGTGA-AAAT-GAA---ATTGATAGGAAACAA-G--GGAAAGGCTGC-------TTTAGG-------TATTAAAGCCACTTG-TATATATAA--TGCG-A--T-TGAAGGTAGATAT----A--TA--ACA---TATTCAAAATAAAATCGCTG-ATGAGATATT--ATGAAAAATATCCAGAAATGCG---------TAGAATC-ATT-ATATACTAT-ATACTAGTATTCTC-AAATTACAC----TTTT--A
gi|37 : CA-TTTAGACGTC-TA-TCAT-ATGCCATATTGGTGA-AAAT-GAAGT-TTTG--GGGGAACAA-G--GGAAAAGCTGC-------TAAAGGTAAAC-Aga
gi|13 : AGAAGTC-AA-TGAT-ATGCCATGATGGCAA-AATC-GAAGT-TGTG--AAGAAACGA-T--GGAAAAGCTGC-------TTTAGGTAAAC-AAATTACATA-------TG-ATG-----C--A-A--T-AAAAGGTAG--AT----T--TA--ACATTT------------AATCGCTA-CTGAGATATC--ATAAAAAATATTCAGA---------AATAT-TAGAATC-ATG-ATCTACAAT-A-GA-----TTCTC-AAATCACACTT
gi|6 : -TCAT-ATGCCATCTTGGTGA-AAATTGAAGT--TTG--GGGAA-CAA-G--GAAAA--TTGA-------TAAAGGTAAAA-AAATT-TATACAC-TGCTA-ATAAAA--T--A-A--TAAAAAGATAG--AT----A---G--ACATTTTATTTAAAATGAAATTGCTA-ATGAGATATTAAATGAAAAATATC--G------A-GAAATATATATAACC-ATGTATCTACAATCA-AT-----TTC-C-AAACTAAA-CTAATTTT--ATTTGG-TG-GATATGATTTTT---T-TA--TTG-ATT------------------------TA---GCAA--GT-CC------------TAT-----GG-CAACTGAAAA-CAGC-ATAGATTAATT---AA-CATTGT-AA--ATACCTGAAAGATATTCCC-T-GAAAGAACTTGA----GA---GG--TGGC-T-G-GAAGTCTTTGTG-A--------TTTAAAAAAA-AAGCTGTTGTAAACCGTT-GAC--ATCCTTG----G-AA-AAA--A--ATATCTAATATTACTTG--T-ATCAATCTTGA-----AG--GAG--AA-TTATG----TAGGGTA--A-ATG-ATGTtt
gi|28 : AACAA-G--GGAAAAGCTGC-------TAAAGGTAAAC-AAGTTATATACAC-TG-TA-ATAAAA--T--A-A--T-GAA--------------------------TTATTTAAAATGAAATTGCTA-GTGAGATATT--ATGAAAAATATCCAGAt
gi|7 : AAAC-AAATTATACA----TG-TATATAGTG--C--A-A--T-AAA-GGTAG--ATTAAGA--TTT-ACATTTTATTCAAAATAAAATCACTA-ATGAGATATC--ATGAACAATATCCAGA--------AATTAT-T-GGATCAATG-ATCTACGAT-A-AC-----TTCTC-AACGTATACTT--TTTA--ATT--G-TGAATTATGA-TTTTTTAT-TA--TTG-ATTT----TGA-AAaata
gi|35 : TATATATAG-TG-CA-ATAAAGGGT--A-AATT-AAGATGTAA--A--------------ATTTTATTCAAAATAAAATCACTA-ACGACA---T--ATGAAAAATATCCAgcagcatatatttaattattgggaatacctgaataaacccgaaagatgctggaggaggtgatcgaagctatgtgtttgaaaatcaaatgtgtaaccgttgacaacccttggaaaaaatattttaatagaattttgactagagaaaaattatttattagagtaaatgaata
gi|33 : ta--T--G-A--T-AAAAGGTAG--AT----A--CT--ACATT------------AAATTGCTA-ATGAGG-AGT--CTGAAAAA---CC-------CA-GAAATAC---G---T-ATG-ATCCACATT-A-TA-----TGCTC-AAATcaaa
gi|30 : atatactg----A--TA--ACATTTTATTTAAAATGAAATTGCTC-ATGAGATACT--ATGAAAAATATCAAAAAATACATG---TAT-CA-AATC-GTG-ATCTACAAT-A-AA-----TTCTC-AAATTAAACaacact
gi|36 : AAAATGAG--CGCTA-ATGAGCTATT--ATGAAAACTATCCAG--------GAA---T-TAGAATT-ATG-ATCTACAAT-G-AA-----TTCAC-AAAGTACAC----TTTT--At
gi|17 : cTGAAATTGCTA-ATGAGATATT--ATGAAAAATGTCCAGA---------AATAT-TAGAATC-ATG-ATCTGCAAT-A-AA-----TTCTTTAAA--AAACTTAATTTT--ATT--G-TG-ATCATGA-TTTT---T-TA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CC------------TAT-----GG-CAACTGAAAG-CAGC-ATAGATTTAATTC-AA-CAa
gi|16 : AATTACAC----TTTTGAATT--A-TG-ATTATGA-TTTT---T-TAAATTG-GTTT----TAG-AATG-TGTATTTC-CTA---GC-A--GT-CC------------CATCCCGTGG-CAAATGAAAG-CAGC-ATAGATTTAATT------ATTGTATA--ATACCTTAAATATG-CCCC-T-GAAAGAGCT---GGAGGA---GG--TTGT-T-G-AAGGC-TTTGTG-T--------TTGAAAAAAA-A
gi|11 : TT---T-AA--TTG-ATTT----TAG-AATG-TGTTCTTC-CTA---GC-A--AT-CC------------TAC-----GG-CAACTGAAAG-CAGC-ACAGATTTAATT------ATTGCAAA--ATACCTGAAATATA-CCCC-CAGAGAGAGCT---GGAGGA---GG--TGAT-T-G-AAGGC-TTTGTG-T--------TTGAAAAAAA-AA--TGTTGC-GACTGTT-GACA-ATCCTTG----GAAA-AGA--C--ATTTT------TAATAG---AAT--ATTTTGAC----TA--GAGAAAA-T
gi|21 : attctgcTT---T-TA--TTG-ATTT----TAT-AATG-TGTACTTC-TTA---GC-A--GT-CC------------TAT-----GA-CA-CTGAAAG-CAGC-ATAGATTTAATTC-AA-CATAGTGAA--ATACCTGAAGTATA-T-CC-T-GAAAGAACTTGAGGAGGAGGTGG--TGGC-T-G-AAGGC-TTTGTG-T--------TTGAAAAAAA-
gi|39 : tt----TAG-AACG-TGTACTTC-CCA---TC-AAGGT-CC------------TACG----GG-CAAC-AAAAGCCAGCAATAGAATTA
gi|12 : -AATG-TGTTCTTC-CTA---GC-A--GG-CC------------TAC-----GG-CAAATGAA-G-CAGC-ATATGTTTAATT------ATTGGGAA--ATACCTTAAATATA-CCCCCT-GAAAGAGCTGTATGAGA--------TGAT-T-G-AAGGT-TTTGTG-TG-------TTGAGAAAAG-AAT--GTTGT-AACCGTT-GAAA-ATCCTTG----G--A-AGA-----------AATA-TATTAG--TAccagcaatcat
gi|27 : TA-TGTACTTC-CTA---GC-A--GT-CG------------TAC-----GG-CAACTGAAAG-CAAC-AGATATCTAATT------ATTGCAAA--ATACCTTAAATAAA-CCCC-T-GAAAAAGCC---GAAGGA---GG--TGGC-C-A-AAGGC-TTTgaatattttatttattatagggaatgaata
gi|7 : TGAAAG-CAGC-ATATATTTAATT------ATTG-GGA--ATACCTGAA-TAAA-CCC----GAAAGA--TGCTGGAGGA---GG--TGAT-C-G-AAG-C-TATGTG-T--------TTGAAAATCA-AAT--GT-GT-AACCGTT-GACA-ACCCTTG----G-AA-AAAA-T--ATTTT-AATA------G-------AATTTTGAC----TA--GAGAAAAATTATTT-ATTAGAGTA--A-ATGAATaatcattgcaaaatacatgt
gi|18 : aaacaaattatacatgtatatagtgcaataaaggtagattaagatttacattttattcaaaataaaatcactaatgagatatcatgaacaatatccagaaattattggatcaatgatctacgataacttctcaacgtatactttttaattgtgaattatgattttttattattgatttGC-ATATATTTAATT------ATTGGCAA--ATGCCTGAAATATA-CCCC-T-GAAAGAGCTGGATGAGG-------------T-G-A---------------------TTGAAAAAAA-AAT--GTTGT-AACTGTT-GGCA-ATCCTTGA---A-AA-AAA--T--ATTT-------TACTGG---AAT--ATCTAAAC----TA--AAGAAAA-TTATTT-ATTAAAGTA--A-ATTAAa
gi|19 : GAA--TTACCAGCATCATA-CACC-C-GAAAGAGTTCGAGACGG--------TGGC-T-G-AAGGC-TTTGTG-TGTTTTTGTTT-----------TCTATTGT-AACAGTT-GACA-GTCCTTG----G-GA-AAA-----------AATA-TCCTAGTATAAT--ATCTTGAC----TT--GAGAAAA-TAATA--ATTAGAGTA--A-ATGAATG
gi|34 : TACCTGAAATATA-CCGC-T-GAAAGAGCTAGAGGAGGC---GA--T----C-A-AAGGC-TTTGTG-T--------TTGAAAAAAA-AAT-TGCTGT-AACCGTT-GACA-ATCCCTG----G-AA-AGA--
gi|40 : AAATA----CCC-C-GAAAGAGCTCGAGG---A---GG--TGGC-A-G-AAGGC-TTTGTG-T--------TTGAAAAata
gi|25 : aggtattgcaCCC-G-GAAAGACTTGTA--AGGA---CG--TGGCAC-G-AAGGC-TTATTT-T--------TTTAGAAAAT-GAT---TTGT-AATCGTTTGACACATCCTTG----G-AA-A-A--TTTATTCT-AAGA-TA--AG--CACT-----TTGACTTAGAG--AAGAAAA-TTATATCATTA-AGTA--A-ATGAttt
gi|26 : CC-T-GAAAGACTTGTAGGACG--------TGGC-CCG-AAGGC-TTTGTG-T--------TTTTATAAAATGAT--GTTGT-AATCGTT-GACA-ATCCTTG----G-AA-A-ATTT--ATTCT-AAGA-TA--AG--------ACTTTGACTTA-AGGAGAGAAAA-TTATTC-ATTAGAGTA--A-ATGAAc
gi|31 : GGA---GG--TGGC-T-G-AAGGC-TTTGTG-T--------TTGAATAAAA-G-TCTGTTGT-AACCGTT-GACA-ATTCTTGAAAAA-AA-AAA--T--ACTCT-AATA-TACTAG--TAATCAATCTTGAC----AG--
gi|42 : ----G-AA-AGAA-T--ATTTT-AATA------G---AAT--ATCTTGAC----TG--AAGAAAA-TAATTT-TTTAGAGTA--A-ATGAAT
gi|38 : -AAA--T--ATTCT-AATA-TACTTG--TAATCAATCTTGGC----AG--GAGAAAA-TTGCCT-GTTAGGGTA--A-ATGAATGTa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AAAATGAATTTCCTTGAAGGACTGCATTAAGCCAAGTTATGGAAAGAATAGAAAACTTGAACACTTTTTCCAAGCACTTATAAATTAATAATGTTTTATTCCATTATTTACGATGAGGATTATCTTATGATTTTTTTTTACAATGTGGAAGAATGAAAATATTATATCAATTGAGGCAAATTGTGTAAAGAATTTTTAGGGGGTGGGGTGGCGGTGGTTGTAA
Unaligned ( gi|14 ): TAGGATTGGTTTGTAAGTTTTGACAAAATTCAATAAATAACTGCAAATTGCCAAGTGATGGAAAGAATAGAAAATTGGGAAACATTTTCAAGCACTTCAAAATTAGTAATGTTTTATTCCGTTACGTAAGATGAGGATTATGCTATGAAATATTCTTACAATGTGGAAGAATAAAAATCATT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|23 ): ACAAAACAACTTCCCTGAATGATTGTATTAATTGCCAGGTGATGGAAAAAGTAGAAATTTGAAACACTATAAATCAATAGTTTTATTCCATTATTTAAGATGGGTATTATCTTATGATATATTTTATGGAAGAATAAATAATATTT
Alignments
lowQualScore : 111 222222 111 1111111 444444444444444 1111111 1111 33333333333 111111 333333333333 3333 11 11111111 111 111111 3333333333333
lowQualScore : 8 777 000000 3 2 111 11 8 777 1 4 0000000 0 55 3 3 4 0 666666666666666 3 3 3 3 666 888 1 2 0 1 2 5 2 8 3 3 888 1111111 0 3 33 6666 2 8888 3 6 0 777777 5 33 33 0000 777777 2 0 1 2 33 444 55555555555 8 2 2 3 77777 3 0 3 2 999999 66 4 4 4 55 3 7777 3 2 2 555 2 33 2 999999999999 2 3 2 33 7777 77 44 0 0 55 2 2 11 0 7777 33 888 2 2 11111111 0 2 444 3 3 3 2 33 5 2 111111 2 2 1 3333333333333 88888 3 4444 44 3
lowQualScore : . ... ...... . . ... .. . ... . . ....... . .. . . . . ............... . . . . ... ... . . . . . . . . . . ... ....... . . .. .... . .... . . . ...... . .. .. .... ...... . . . . .. ... ........... . . . . ..... . . . . ...... .. . . . .. . .... . . . ... . .. . ............ . . . .. .... .. .. . . .. . . .. . .... .. ... . . ........ . . ... . . . . .. . . ...... . . . ............. ..... . .... .. .
lowQualScore : 0 666 555555 5 5 777 33 6 999 0 5 6666666 1 00 6 6 9 2 444444444444444 6 6 6 6 222 777 1 9 5 7 7 0 5 8 1 1 333 0000000 2 1 88 5555 9 2222 1 2 4 333333 7 99 99 9999 777777 7 9 7 5 44 444 22222222222 6 9 9 1 77777 1 7 8 9 111111 11 4 0 0 00 6 1111 1 9 9 000 9 99 9 333333333333 9 1 9 99 8888 00 22 2 9 88 4 4 88 3 1111 11 333 2 5 66666666 2 7 111 1 1 1 9 99 3 7 444444 7 9 4 8888888888888 11111 1 9999 66 3
consensus : GCGAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTTC---CATCCAGGCGTTTATA--AAATGCCATGATGGGG-G---G-GGAG--G-GG-GGNGGGGG---------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTG-A-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAA---TATCCAGA-----AGAAATAT-TAGAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT-ATTTNATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACT----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
Reference ( family-5328 ) : GTTAACATG-TCTNCATATTTTTT-TA---AATTTTGTTTTC---CATCCAGACGTCTATN--ANATGCCATGATGGGG-G---G-GGAG--G-GG-GGNGGGGG---------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGNTGGTG-A-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TANA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAA---TATCCAGA----CAGAAATAT-TAGAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTANA-CTT-ATTTTATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACN----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
gi|1 : GTAAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTTC---CATACAGACGTTTATA--AAATGCCATGATGGGGTG---G-GGAG--G-GA-GGTGGGGG---------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-AATGCCAAGTTCGTG-A-AAAT-GAAGTGTTG----GGGAAATAAGGGAAAAGCTGC-TAAA----GGTAAAC-ATATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TCA------C-ATTTTATTTAAAATGAAATTGCTA-ATGAGATATT--ATGGAAAA---TATCCAGATTTGCAGAAATAT-TAGAATCA-TG-ATCTACAATA-A-----CTTC-TCAAATTAAACCTC-ATTTTATT--G-TGGTTATGG-C-ATTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-TAACTGAAAG-CAGC-ATAGATT--TATTTCAACATTGTGAA--ATACCTGAAATATA-TCCCT-GAAAGA-ACTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-G-A----T-AT-TTCAATA-TACTAGCAATCAATCTTGACA----GGAGAAAA-TTATAT-GTTAGGGTA--A-ATGAATGT
gi|11 : TTTAA--TTG-ATTT----TAG-AATG-TGTTCTTC-CTA---GC-A--AT-CCTAC------------GG-CAACTGAAAG-CAGC-ACAGATT--TAATT----ATTGCAAA--ATACCTGAAATATA-CCCCCAGAGAGA-GCT---GGAGGA---GG--TGAT-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AA--TGTTGC-GACTGTT-GACA-ATCCTTG-G--AA-A-AGA----C-AT-TTT-----TAATAG-AAT--ATTTTGACT----AGAGAAAA-T
gi|12 : attctgc-AATG-TGTTCTTC-CTA---GC-A--GG-CCTAC------------GG-CAAATG-AAG-CAGC-ATATGTT--TAATT----ATTGGGAA--ATACCTTAAATATACCCCCT-GAAAGA-GCT---GTATGA---GA--TGAT-T-G-AAGGTTTTGTG-TG-------TTGAGAAAAG-AA--TGTTGT-AACCGTT-GAAA-ATCCTTG-G--AA-G-A--------------AATA-TATTAGTAG--AATATT-----------------TTATTT-ATTATAGGG--A-ATGAAT
gi|13 : AGAAGTCA-A-TGA-TATGCCATGATGGCA-A-AATC-GAAGTTGTG----AAGAAACGATGGAAAAGCTGC-TTTA----GGTAAAC-AAATTACATA-------TG-AT---GC--A-AT-AAA--AGGTAG--AT-T--TAA------C-ATTT------------AATCGCTA-CTGAGATATC--ATAAAAAA---TATT--------CAGAAATAT-TAGAATCA-TG-ATCTACAATA-G-----ATTC-TCAAATCACA-CTT-a
gi|16 : AATTACA-CTT--TTGAATT--A-TGATTATGA-T-TTTTTAAATTG-GTTT----TAG-AATG-TGTATTTC-CTA---GC-A--GT-CCCATCCCGT-------GG-CAAATGAAAG-CAGC-ATAGATT--TAATT-A---TTGTATA--ATACCTTAAATATG-CCCCT-GAAAGA-GCT---GGAGGA---GG--TTGT-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-Att
gi|17 : TGAAATTGCTA-ATGAGATATT--ATGAAAAA---TGTCCAGA--------AATAT-TAGAATCA-TG-ATCTGCAATA-A-----ATTCTTTAAA--AAA-CTTAATTTTATT--G-TGATCATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATTCAACA
gi|18 : GC-ATATATT--TAATT-A---TTGGCAA--ATGCCTGAAATATA-CCCCT-GAAAGA-GCTGGATGAGG--------------------------TG-A--------TTGAAAAAAA-AAT--GTTGT-AACTGTT-GGCA-ATCCTTGAA--AA-A-A-A----T-AT-TT------TACTGG-AAT--ATCTAAACT----AAAGAAAA-TTATTT-ATTAAAGTA--A-ATTAA
gi|19 : GAA--TTACCAGCATCATA-CACCC-GAAAGA-GTTCGAGACGG--------TGGC-T-G-AAGGCTTTGTG-TGTTTTTGTTT-----------TCTATTGT-AACAGTT-GACA-GTCCTTG-GGAAA-A-A-A----T-AT-CCTAGTA-------TAAT--ATCTTGACT----TGAGAAAA-TAATA--ATTAGAGTA--A-ATGAATG
gi|2 : TAGCATGGTCT-CATATTTTTT-GA---ATTTTTTTTTTCGTTTATCAAAATGCC-ATG--ATNNNNNNNNNNNNNN-N---N-NNNN--N-NN-NNNNNNNNNNNNNNNNNNNNNNTT-AACAAGGTC-TTCTTTAACTTTCATATT--------GTTTTCCA-TACAGA----T-AGTCA-TATGCCATG-TGGTG-A-AAAG-AAAGTTTTA----AGGAAACAAGGGAAAAGCTGC-TAAA----AGTAAAC-AAATTATATACAC-TG-TA-ATAAA-T--G-AT-AAA--AGATAG--AT-AACTAA------C-ATTTTATTTAAAAGGAAATTGCTA-ATGAGATATA--ATGAAAAA---TATCCAGA--------AATAT-TAGGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTAAA-CTT--TTAAATT--G-TGATTCTGA-T-TTGTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTACATGTACATGTATGG-CAACTGAAAA-CAGC-ATAGATT--TAATTCAATATTGTGAA--ATA--------------CCT-GAAAGA-ATTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T--------TTG-AAAAAA-ATTCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AAGA-A-A----T-AT-TCTGA------TAATAATCAATCTTGACT----GGAGAAAA-TTATCT-GTTAGGGTA--T-ATGAATGT
gi|20 : tgTTCATATTTA-ATTTTGTTTTCCA-TAAAGTCGTAT-A-TCA-TATGCCATGGTGGTG-A-AA-T-GAAGTTTTG----AGGAAAGAAGGGAAAAGCTGA-TAAA----GGTAAAC-AGATTATATACAC-AG-TA-ATAGAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTTAtg
gi|21 : -T-TTTTTA--TTG-ATTT----TAT-AATG-TGTACTTC-TTA---GC-A--GT-CCTAT------------GA-C-ACTGAAAG-CAGC-ATAGATT--TAATTCAACATAGTGAA--ATACCTGAAGTATA--TCCT-GAAAGA-ACTTGAGGAGGAGGTGG--TGGC-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-
gi|22 : TAACATA-TCTTCTTAATTTTCATAGTTAATTTTGTTTTC---CATCCAGGTGTTTTTT--AAATTTCAT--TGGGG-G---G-GGGG--G-GG-G
gi|24 : ttatatcaattgaggcagattgtgtaaagatttttattatttttatgtggtggtgtttgGG-G---G-ATAG--G-GG-GGGGGAGG---------------TTAACA-TGTA-TTCTC-AATTATCTTATTTG-ATTTTGTTTTTCA-TTCAGAC-T----------------TGATGGAG-A-ACAT-GAATTTCAA----AGGACACAAGGGAAAAG-TGCGTTTG----GCTAAAC--AATTCTATcttgtcttct
gi|25 : gtgttttttctttCCCG-GAAAGA-CTTGTA--AGGA---CG--TGGCAC-G-AAGGCTTATTT-T--------TTTAGAAAAT-GAT---TTGT-AATCGTTTGACACATCCTTG-G--AA-A-A-T----TTAT-TCTAAGA-TA--AGCACT-----TTGACTTAGAGAAGAAAA-TTATATCATTA-AGTA--A-ATGAg
gi|26 : CCT-GAAAGA-CTTGTAGGACG--------TGGC-CCG-AAGGCTTTGTG-T--------TTTTATAAAATGAT--GTTGT-AATCGTT-GACA-ATCCTTG-G--AA-A-ATT----T-AT-TCTAAGA-TAAGACT--TTGA-CTTAAGG----AGAGAAAA-TTATTC-ATTAGAGTA--A-ATGAAc
gi|27 : TA-TGTACTTC-CTA---GC-A--GT-CGTAC------------GG-CAACTGAAAG-CAAC-AGATATC--TAATT----ATTGCAAA--ATACCTTAAATAAA-CCCCT-GAAAAA-GCC---GAAGGA---GG--TGGC-C-A-AAGGCTTT
gi|28 : AACAAGGGAAAAGCTGC-TAAA----GGTAAAC-AAGTTATATACAC-TG-TA-ATAAAAT--A-AT-GAA------------------------------TTATTTAAAATGAAATTGCTA-GTGAGATATT--ATGAAAAA---TATCCAGA----aatcattgcaaaatacatgt
gi|29 : --AAATGCCATGATGGGGTG---GTGGAG--G-GG-GGAGGGGAGT-------------T-AACA-TGTC-TTCTT-AACATTCATATTCG-ATTTTATTTTCCA-TCCAGACGTCT-A-CTG-TATGCCATaata
gi|3 : aTAGCATG-TCT-CATATTTTTT-GA---GATTTTCTTTTT---C--------GTTTATTCAAAATGCCATGATGGGG-GAGGG-GGAG--G-GG-GGAGGGGAAGGAGGGGGGGT---T-AACA-AGTC-TTCTT-TACATTCATATT--------GTTTTC-A-TACAGAC---T-A--CA-TATGCCATG-TGGTA-A-AGA---AAGTTTTA----AGGAAACAAGGGAAAAG-TGC-TAAA----AGTAAACAAAATTATATACAC-TG-TA-AT-AAAT--G-AT-AAA--AGATAG--A--A--TAA------CAAACATATTTTAAAAGGAATTGCTACAT-AGATATA--ATGAAAAA---TATCCAG---------AATCT-TAGGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTA-A-CTT-A---AATT--GCTGATTCTGA-T-TTGTTA--TTG-A-TT----TAG-AATG-TGTACTTCGCTA---GC----GTACCTACATGTACATGTATGGCCAACTGAAAA-CAGC-ATAGATT--TAATT--ATATTGTGAA--ATACCTGAAA------------AAA----TTGGA-GAGGA---GGTTTGGC-T-GAAAGGTTTTGTGTT--------TTG--AAAAA-ATTCTGTTGT-AAC--TT-GACA-ATCCTTG-G--AAGA-A-A----T-AT-TCTGATA-----AG-AATC-ATCTTA--T----GGAGAAAA-TTATCT-GTTAGGGTATTATATGAATGT
gi|30 : tg-A--TAA------C-ATTTTATTTAAAATGAAATTGCTC-ATGAGATACT--ATGAAAAA---TATCAAAA----AATACATGTATCAAATCG-TG-ATCTACAATA-A-----ATTC-TCAAATTAAA-CTtgtg
gi|31 : GGA---GG--TGGC-T-G-AAGGCTTTGTG-T--------TTGAATAAAA-G-TCTGTTGT-AACCGTT-GACA-ATTCTTG-A--AA-A-A-AAAAAT-AC-TCTAATA-TACTAGTAATCAATCTTGACA----G
gi|32 : ACGTTTATA--AAATGCCATGATGGGG-G---T--------------TGGGGG---------------T-AACA-TGTC-TTCTT-AACTTTTATATCTA-ATTTTGTTTTCCA-TCCAGACATCT-A-TCA-TATGCCATGTT
gi|33 : T--G-AT-AAA--AGGTAG--AT-A--CTA------C-ATT------------AAATTGCTA-ATGAGG-AGT--CTGAAAAA------CC-------CAGAAATAC---G---TA-TG-ATCCACATTA-T-----ATGC-TCAAATAACA-CT
gi|34 : atatactgTACCTGAAATATA-CCGCT-GAAAGA-GCTAGAGGAGGC---GA--T----C-A-AAGGCTTTGTG-T--------TTGAAAAAAA-AAT-TGCTGT-AACCGTT-GACA-ATCCCTG-G--AA-AGA-A----T-A
gi|35 : TATATATAG-TG-CA-ATAAAG---G-GT-AAATTA---AG--AT-G--TAA------A-ATTTTATTCAAAATAAAATCACTA-ACGACA---T--ATGAAAAA---TATCCA
gi|36 : taCAAAATGAG--CGCTA-ATGAGCTATT--ATGAAAAC---TATCCAG-------GAA---T-TAGAATTA-TG-ATCTACAATG-A-----ATTC-ACAAAGTACA-CTT-caaa
gi|37 : CA-TTTAGACGTCT-A-TCA-TATGCCATATTGGTG-A-AAAT-GAAGTTTTG----GGGGAACAAGGGAAAAGCTGC-TAAA----GGTAAAC-Attaa
gi|38 : -A-A-A----T-AT-TCTAATA-TACTTGTAATCAATCTTGGCA----GGAGAAAA-TTGCCT-GTTAGGGTA--A-ATGAATGT
gi|39 : ----TAG-AACG-TGTACTTC-CCA---TC-AAGGT-CCTACG-----------GG-CAAC-AAAAGCCAGCAATAGAAT--TAtgtgga
gi|4 : GGGG-G---T-GTAT--G-TGTGGTGGTAG---------------T-AGCA-CTTC-TTCTT-AA-------------------TTTTCCA-TCCAGGCGT-T-A-TAA-CATGACATGAAGGGG-A-ccagcaatcat
gi|4 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttaTCTTCT-TA---A------TTTTC---CATCCAGGCGT-TATA--ACATGACATGA--------------AG--G-GG-AG----GG---------------T-AGAA-TGTCCTTCTT-AATTTTCATGTTAG-ATTTTGT---CCA-ACCAGACGTCTTA-TCAATATGCTATGATGGTG-ATAAAT--AAGTTGTG----ATTGAACAAAGGAAAAGCTGC-CCCATTTTAGTAAAC-AAATTATATA-----A-TA-AAAAGGT--ACATTAAG--AGATAC---T-AG-TAA------C-ATTTAATGCAAAATAAAATCGCTA-ACGGGATATT--ATGAAAGA---AATCCAGA--------AATAT-TAGAATCA-TG-ATGTACAATA-A-----ATTC-TGAAAGTATA-CTT--TTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ACTT----TAT-AATG-TGTTCTTC-CTA---TC-A--GT-ACTAT------------GG-gggtagaatgtccttcttaattttcatgttagattttgtccaaccagacgtcttatcaatatgctatgatggtgataaataagttgtgattgaacaaaggaaaagctgccccattttagtaaacaaattatataataaaaaggtacattaagagatactagtaacatttaatgcaaaataaaatcgctaacgggatattatgaaagaaatccagaaatattagaatcatgatgtacaataaattctgaaagtatactttttaattgtgattatgattttttattgactttataatgtgttcttcctatcagtactatgg
gi|40 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttagggggtgtatgtgtggtggtagtagcactTGCAAAATA-CCCC--GAAAGA-GCTCGAGG---A---GG--TGGC-A-G-AAGGCTTTGTG-T--------TTGAAAA
gi|41 : aggtatG---------------T-AACA-TATC-GTCTT-AATT------TTTA-A------TTTCCA-CTCAGACGTCT-A-TCA-TATGCCATGATGGTttt
gi|42 : tgtttG-A--AA-G-A-A----T-AT-TTTAATA------G-AAT--ATCTTGACT----GAAGAAAA-TAATTT-TTTAGAGTA--A-ATGAAT
gi|5 : G-G---G-GGAGTCGTGG-AGTAGTTA---------------T-AACA-TGTC-TTCCT-AA---------TTACATTTTGTTTTCCAGTCCAGAAAGCA-AGTGA-TATGCCATA----TGCA-AAATCGAAATTGTGGAAGAAAAAACGATGGAAAAACTGC-TTTA----GGTAAAC-AAAT-ACATATGA-TG-C--------C--A-AT-AAA--AGGTAG--ATTA--TAA------C-ATTT------------AATCGCTA-CTGAGATATC--AAAAAAAAAAATATTCAGA--------AATAT-TA-AATCA-TG-ATCTACAATA-G-----ATTC-TCAAATC-CA-CT---TTAAATA--G-TGATTATAA-TATTTGTA--TTGAATTTTGTATAGTAGTGATGTACTTG-CGATTTGC-A--GT-CGTAC-------------G-CAACTGAAAG-CAAC-AGATATTTCTAATT----ATTGCAAAGGATACCT--AATA-A-ACCCT-GAAAAA-GCC---GAAGGA---GT--TGGC-C-A-AAGGCTTa
gi|6 : cataacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggaaaatttgatgcattactgtgtaaagaaattgtttac-TCA-TATGCCATCTTGGTG-A-AAATTGAAGTTT------GGGGAACAAGGAAAA--TTGA-TAAA----GGTAAAA-AAATT-TATACAC-TGCTA-ATAAAAT--A-ATAAAA--AGATAG--AT-A---GA------C-ATTTTATTTAAAATGAAATTGCTA-ATGAGATATTAAATGAAAAA---TATC--G------AGAAATATATATAACCA-TGTATCTACAATC-A-----ATTT-CCAAACTAAA-CTA-ATTTTATTTGG-TGGATATGATT-TTTTTA--TTG-ATT------------------------TA---GCAA--GT-CCTAT------------GG-CAACTGAAAA-CAGC-ATAGA-T--TAATT-AACATTGT-AA--ATACCTGAAAGATATTCCCT-GAAAGA-ACTTGA----GA---GG--TGGC-TGG-AAGTCTTTGTG-A--------TTTAAAAAAA-AAGCTGTTGTAAACCGTT-GAC--ATCCTTG-G--AA-A-A-A----A-ATATCTAATATTACTTGT-ATCAATCTTGA-A----GGAG--AA-TTATG----TAGGGTA--A-ATG-ATGTaagttcatgcaaaataacatgta
gi|7 : AAAC-AAATTATACA----TG-TATATAGTGC--A-AT-AAA---GGTAG--AT----TAAGATTTAC-ATTTTATTCAAAATAAAATCACTA-ATGAGATATC--ATGAACAA---TATCCAGA-------AATTAT-TGGA-TCAATG-ATCTACGATA-A-----CTTC-TCAACGTATA-CTT---TTTA--------ATTGTGA-A-TTATGA--TT---TTT----TAT-TAT--TG-ATTT-----------------------------------------TGAAAG-CAGC-ATATATT--TAATT-A---TTG-GGA--ATACCTGAA-TAAA-CCC---GAAAGATGCTGGAGGAGG--------TGAT-C-G-AAG-CTATGTG-T--------TTGAAAATCA-AAT--GT-GT-AACCGTT-GACA-ACCCTTG-G--AA-A-A-AA---T-AT-TTTAATA------G-----AATTTTGACT----AGAGAAAAATTATTT-ATTAGAGTA--A-ATGAATt
gi|8 : TAACATG-TCTG---ATTGTCT------GATTTTGTTTTC---CATCCAGGTGTTTATA--AAATGCCATGA----------G-GGAG--G-AG-GGGGGGGG-------------------CA-TGTC-TTCTG-AATTTTCACATTTA-ATTTTCTTTTCCA-CCTAGATGTCT-A-TCA-TATACCATGATGGTG-A-AA-----------------GAAAACAAAGGAAAAGTTGC-TTTT----GGTAAAC-AAATTATATAGAG-TG-CA-ATAAAA------------------G--AT----TAA------C-ATTTTATTCAAAATAAAATCACTA-ACGTGATATC--ATGAAAAA---TATC--------CAGAAATAC-TAGAATCA-TG-ATCTACAa
gi|9 : tggttgTTTGTTTTTCA-TCCAGACGTCT-A-TCA-TTTGCCATGATAGTG-A-AAAT-GAAATTGAT----AGGAAACAAGGGAAAGGCTGC-TTTA----GGT-------ATTAAAGCCACTTG-TATATATAATGCG-AT-TGA--AGGTAGATAT-A--TAA------C-A---TATTCAAAATAAAATCGCTG-ATGAGATATT--ATGAAAAA---TATC--------CAGAAATGCGTAGAATCA-TT-ATATACTATATACTAGTATTC-TCAAATTACA-CTT-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAATGAATTTCCTTGAAGGACTGCATTAAGCCAAGTTATGGAAAGAATAGAAAACTTGAACACTTTTTCCAAGCACTTATAAATTAATAATGTTTTATTCCATTATTTACGATGAGGATTATCTTATGATTTTTTTTTACAATGTGGAAGAATGAAAATATTATATCAATTGAGGCAAATTGTGTAAAGAATTTTTAGGGGGTGGGGTGGCGGTGGTTGTAA
Unaligned ( gi|14 ): TAGGATTGGTTTGTAAGTTTTGACAAAATTCAATAAATAACTGCAAATTGCCAAGTGATGGAAAGAATAGAAAATTGGGAAACATTTTCAAGCACTTCAAAATTAGTAATGTTTTATTCCGTTACGTAAGATGAGGATTATGCTATGAAATATTCTTACAATGTGGAAGAATAAAAATCATT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|23 ): ACAAAACAACTTCCCTGAATGATTGTATTAATTGCCAGGTGATGGAAAAAGTAGAAATTTGAAACACTATAAATCAATAGTTTTATTCCATTATTTAAGATGGGTATTATCTTATGATATATTTTATGGAAGAATAAATAATATTT
Alignments
lowQualScore : 1 222222 33333333333333 1111 1111111 222222222222 1111111 111111 22222222222 111 11 333333333333 3333 11 11111111 111 111111 3333333333333 111111
lowQualScore : 8 0 000000 3 2 99999999999999 1111 66 4 0000000 0 55 3 3 4 0 333333333333 3 3 3 3 666 888 1 2 0 1 2 5 2 4 3 888 1111111 0 3 22 6666 3 8888 3 6 111111 5 33 33 2 888 777777 33 1 2 777 33333333333 000 33 2 2 3 77777 3 0 4 2 88 33 66 4 4 4 55 3 7777 3 2 2 555 2 33 2 999999999999 2 3 2 33 7777 77 44 0 0 55 2 2 11 0 7777 33 888 2 2 11111111 0 2 444 3 3 3 2 33 5 2 111111 2 2 1 8888888888888 444444 3 4444 44 3
lowQualScore : . . ...... . . .............. .... .. . ....... . .. . . . . ............ . . . . ... ... . . . . . . . . . ... ....... . . .. .... . .... . . ...... . .. .. . ... ...... .. . . ... ........... ... .. . . . ..... . . . . .. .. .. . . . .. . .... . . . ... . .. . ............ . . . .. .... .. .. . . .. . . .. . .... .. ... . . ........ . . ... . . . . .. . . ...... . . . ............. ...... . .... .. .
lowQualScore : 0 8 555555 5 5 22222222222222 8888 99 5 6666666 1 00 6 6 9 2 666666666666 6 6 6 6 222 777 1 9 5 7 7 0 5 6 1 333 0000000 2 1 00 5555 1 2222 1 2 111111 7 99 99 9 222 777777 55 7 5 888 33333333333 777 99 9 9 1 77777 1 7 8 9 88 11 11 4 0 0 00 6 1111 1 9 9 000 9 99 9 333333333333 9 1 9 99 8888 00 22 2 9 88 4 4 88 3 1111 11 333 2 5 66666666 2 7 111 1 1 1 9 99 3 7 444444 7 9 4 5555555555555 888888 1 9999 66 3
consensus : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGGG-G---G-GGAG--G-GG-GGNGGGGG------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAACAAA-TTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--A-TA--TAA------CATTT-TATTCAAAATGAAATCGCTA-ATGAGATATT---ATGAAAAATATCCAGA-----AGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT-ATTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACT-----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
Reference ( family-5328 ) : GCGAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGGG-G---G-GGAG--G-GG-GGNGGGGG------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAACAAA-TTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--A-TA--TAA------CATTT-TATTCAAAATGAAATCGCTA-ATGAGATATT---ATGAAAAATATCCAGA-----AGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT-ATTTNATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACT-----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
gi|1 : AACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---ACAGACGTTTAT--AAAATGCCATGATGGGGTG---G-GGAG--G-GA-GGTGGGGG------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-AATGCCAAGTTCGTGA-AAAT-GAAGTGTTG----GGGAAATAAGGGAAAAGCTGC-TAAA----GGTAAACATA-TTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--A-TA--TCA------CATTT-TATTTAAAATGAAATTGCTA-ATGAGATATT---ATGGAAAATATCCAGATTTGCAGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----CTTC-TCAAATTAAACCTC-ATTTTATT--G-TGGTTATGG-C-ATTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-TAACTGAAAG-CAGC-ATAGATT--TATTTCAACATTGTGAA--ATACCTGAAATATA-TCCCT-GAAAGA-ACTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-G-A----T-AT-TTCAATA-TACTAGCAATCAATCTTGACA-----GGAGAAAA-TTATAT-GTTAGGGTA--A-ATGAATGT
gi|11 : gtaTTTAA--TTG-ATTT----TAG-AATG-TGTTCTTC-CTA---GC-A--AT-CCTAC------------GG-CAACTGAAAG-CAGC-ACAGATT--TAATT----ATTGCAAA--ATACCTGAAATATA-CCCCCAGAGAGA-GCT---GGAGGA---GG--TGAT-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AA--TGTTGC-GACTGTT-GACA-ATCCTTG-G--AA-A-AGA----C-AT-TTT-----TAATAG-AAT--ATTTTGACT-----AGAGAAAA-T
gi|12 : attctgc-AATG-TGTTCTTC-CTA---GC-A--GG-CCTAC------------GG-CAAATG-AAG-CAGC-ATATGTT--TAATT----ATTGGGAA--ATACCTTAAATATACCCCCT-GAAAGA-GCT---GTATGA---GA--TGAT-T-G-AAGGTTTTGTG-TG-------TTGAGAAAAG-AA--TGTTGT-AACCGTT-GAAA-ATCCTTG-G--AA-G-A--------------AATA-TATTAGTAG--AATATT------------------TTATTT-ATTATAGGG--A-ATGAAT
gi|13 : AGAAGTCA-A-TGA-TATGCCATGATGGCAA-AATC-GAAGTTGTG----AAGAAACGATGGAAAAGCTGC-TTTA----GGTAAACAAA-TTACATA-------TG-AT---GC--A-AT-AAA--AGGTAG--A-TT--TAA------CATTT-------------AATCGCTA-CTGAGATATC---ATAAAAAATATTC--------AGAAATAT---TA--GAATCA-TG-ATCTACAATA-G-----ATTC-TCAAATCACA-CTT-a
gi|16 : AATTACA-CTT--TTGAATT--A-TGATTATGA-T-TTTTTAAATTG-GTTT----TAG-AATG-TGTATTTC-CTA---GC-A--GT-CCCATCCCGT-------GG-CAAATGAAAG-CAGC-ATAGATT--TAATT-A---TTGTATA--ATACCTTAAATATG-CCCCT-GAAAGA-GCT---GGAGGA---GG--TTGT-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-Att
gi|17 : TGAAATTGCTA-ATGAGATATT---ATGAAAAATGTCCAGA-----A---ATAT---TA--GAATCA-TG-ATCTGCAATA-A-----ATTCTTTAAA--AAA-CTTAATTTTATT--G-TGATCATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATTCAACA
gi|18 : GC-ATATATT--TAATT-A---TTGGCAA--ATGCCTGAAATATA-CCCCT-GAAAGA-GCTGGATGAGG--------------------------TG-A--------TTGAAAAAAA-AAT--GTTGT-AACTGTT-GGCA-ATCCTTGAA--AA-A-A-A----T-AT-TT------TACTGG-AAT--ATCTAAACT-----AAAGAAAA-TTATTT-ATTAAAGTA--A-ATTAA
gi|19 : GAA--TTACCAGCATCATA-CACCC-GAAAGA-GTTCGAGACGG--------TGGC-T-G-AAGGCTTTGTG-TGTTTTTGTTT-----------TCTATTGT-AACAGTT-GACA-GTCCTTG-GGAAA-A-A-A----T-AT-CCTAGTA-------TAAT--ATCTTGACT-----TGAGAAAA-TAATA--ATTAGAGTA--A-ATGAATG
gi|2 : AGCATGGTCT-CATATTTTTT-GA---ATTTTTTTTTTCGTTTATCAAAATGCCATGATNNNNNNNNNNNN--NNNNNNNNNNNNNNNNN-N---N-NNNN--N-NN-NNNNNNNT------------T-AACAAGGTC-TTCTTTAACTTTCATATT--------GTTTTCCA-TACAGA----T-AGTCA-TATGCCATG-TGGTGA-AAAG-AAAGTTTTA----AGGAAACAAGGGAAAAGCTGC-TAAA----AGTAAACAAA-TTATATACAC-TG-TA-ATAAA-T--G-AT-AAA--AGATAG--A-TAACTAA------CATTT-TATTTAAAAGGAAATTGCTA-ATGAGATATA---ATGAAAAATATCCAGA-----A---ATAT---TA--GGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTAAA-CTT--TTAAATT--G-TGATTCTGA-T-TTGTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTACATGTACATGTATGG-CAACTGAAAA-CAGC-ATAGATT--TAATTCAATATTGTGAA--ATA--------------CCT-GAAAGA-ATTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T--------TTG-AAAAAA-ATTCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AAGA-A-A----T-AT-TCTGA------TAATAATCAATCTTGACT-----GGAGAAAA-TTATCT-GTTAGGGTA--T-ATGAATGT
gi|20 : tgtTTCATATTTA-ATTTTGTTTTCCA-TAAAGTCGTAT-A-TCA-TATGCCATGGTGGTGA-AA-T-GAAGTTTTG----AGGAAAGAAGGGAAAAGCTGA-TAAA----GGTAAACAGA-TTATATACAC-AG-TA-ATAGAAT--A-AT-AAA--AGGTAG--A-TA--TAA------CATTT-TATTTAtg
gi|21 : -T-TTTTTA--TTG-ATTT----TAT-AATG-TGTACTTC-TTA---GC-A--GT-CCTAT------------GA-C-ACTGAAAG-CAGC-ATAGATT--TAATTCAACATAGTGAA--ATACCTGAAGTATA--TCCT-GAAAGA-ACTTGAGGAGGAGGTGG--TGGC-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-
gi|22 : AACATA-TCTTCTTAATTTTCATAGTTAATTTTGTTTT--------------CCAT---CCAGGTGTTTTT--TAAATTTCAT--TGGGG-G---G-GGGG--G-GG-G
gi|24 : ttatatcaattgaggcagattgtgtaaagatttttattatttttatgtggtggtgtttgtGG-G---G-ATAG--G-GG-GGGGGAGG------------TTAACA-TGTA-TTCTC-AATTATCTTATTTG-ATTTTGTTTTTCA-TTCAGAC-T----------------TGATGGAGA-ACAT-GAATTTCAA----AGGACACAAGGGAAAAG-TGCGTTTG----GCTAAAC-AA-TTCTATcttgtcttct
gi|25 : gtgttttttctttCCCG-GAAAGA-CTTGTA--AGGA---CG--TGGCAC-G-AAGGCTTATTT-T--------TTTAGAAAAT-GAT---TTGT-AATCGTTTGACACATCCTTG-G--AA-A-A-T----TTAT-TCTAAGA-TA--AGCACT-----TTGACTTAGA-GAAGAAAA-TTATATCATTA-AGTA--A-ATGAg
gi|26 : CCT-GAAAGA-CTTGTAGGACG--------TGGC-CCG-AAGGCTTTGTG-T--------TTTTATAAAATGAT--GTTGT-AATCGTT-GACA-ATCCTTG-G--AA-A-ATT----T-AT-TCTAAGA-TA--AG------ACTTTGACTTAAGGAGAGAAAA-TTATTC-ATTAGAGTA--A-ATGAAc
gi|27 : TA-TGTACTTC-CTA---GC-A--GT-CGTAC------------GG-CAACTGAAAG-CAAC-AGATATC--TAATT----ATTGCAAA--ATACCTTAAATAAA-CCCCT-GAAAAA-GCC---GAAGGA---GG--TGGC-C-A-AAGGCTTT
gi|28 : AACAAGGGAAAAGCTGC-TAAA----GGTAAACAAG-TTATATACAC-TG-TA-ATAAAAT--A-AT-GAA-----------------------------T-TATTTAAAATGAAATTGCTA-GTGAGATATT---ATGAAAAATATCCAGA-----Aaatcattgcaaaatacatgt
gi|29 : --AAAATGCCATGATGGGGTG---GTGGAG--G-GG-GGAGGGGAGT----------T-AACA-TGTC-TTCTT-AACATTCATATTCG-ATTTTATTTTCCA-TCCAGACGTCT-A-CTG-TATGCCATata
gi|3 : AGCATG-TCT-CATATTTTTT-GA---GATTTTCTTTT--------------TC-----------GTTTATTCAAAATGCCATGATGGGG-GAGGG-GGAG--G-GG-GGAGGGGAAGGAGGGGGGGTT-AACA-AGTC-TTCTT-TACATTCATATT--------GTTTTC-A-TACAGAC---T-A--CA-TATGCCATG-TGGTAA-AGA---AAGTTTTA----AGGAAACAAGGGAAAAG-TGC-TAAA----AGTAAACAAAATTATATACAC-TG-TA-ATAAA-T--G-AT-AAA--AGATAG--A--A--TAA------CAAACATATTTTAAAAGGAATTGCTACAT-AGATATA---ATGAAAAATATCCAGA-----A----TCT---TA--GGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTA-A-CTT-A---AATT--GCTGATTCTGA-T-TTGTTA--TTG-A-TT----TAG-AATG-TGTACTTCGCTA---GC----GTACCTACATGTACATGTATGGCCAACTGAAAA-CAGC-ATAGATT--TAATT--ATATTGTGAA--ATACCTGAAA------------AAA----TTGGA-GAGGA---GGTTTGGC-T-GAAAGGTTTTGTGTT--------TTG--AAAAA-ATTCTGTTGT-AAC--TT-GACA-ATCCTTG-G--AAGA-A-A----T-AT-TCTGATA-----AG-AATC-ATCTTA--T-----GGAGAAAA-TTATCT-GTTAGGGTATTATATGAATGT
gi|30 : tgtA--TAA------CATTT-TATTTAAAATGAAATTGCTC-ATGAGATACT---ATGAAAAATATC---A-----AAAAATACATGTATCAAATCG-TG-ATCTACAATA-A-----ATTC-TCAAATTAAA-CTtgtg
gi|31 : GGA---GG--TGGC-T-G-AAGGCTTTGTG-T--------TTGAATAAAA-G-TCTGTTGT-AACCGTT-GACA-ATTCTTG-A--AA-A-A-AAAAAT-AC-TCTAATA-TACTAGTAATCAATCTTGAC
gi|32 : CGTTTAT--AAAATGCCATGATGGGG-G---T--------------TGGGGG------------T-AACA-TGTC-TTCTT-AACTTTTATATCTA-ATTTTGTTTTCCA-TCCAGACATCT-A-TCA-TATGCCATGag
gi|33 : aT--G-AT-AAA--AGGTAG--A-TA--CTA------CATT-------------AAATTGCTA-ATGAGG-AGT---CTGAAAA--ACCC--------AGAAATAC-------G---TA-TG-ATCCACATTA-T-----ATGC-TCAAATAACA-CTtt
gi|34 : atatactgTACCTGAAATATA-CCGCT-GAAAGA-GCTAGAGGAGGC---GA--T----C-A-AAGGCTTTGTG-T--------TTGAAAAAAA-AAT-TGCTGT-AACCGTT-GACA-ATCCCTG-G--AA-AGA-A----T-A
gi|35 : TATATATAG-TG-CA-ATAAAG---G-GT-AAATTA---AG--A-TG--TAA------AATTT-TATTCAAAATAAAATCACTA-ACGACA---T---ATGAAAAATATCCACA-----A
gi|36 : taCAAAATGAG--CGCTA-ATGAGCTATT---ATGAAAACTATCCAGG-----A-----AT---TA--GAATTA-TG-ATCTACAATG-A-----ATTC-ACAAAGTACA-CTT-a
gi|37 : CA-TTTAGACGTCT-A-TCA-TATGCCATATTGGTGA-AAAT-GAAGTTTTG----GGGGAACAAGGGAAAAGCTGC-TAAA----GGTAAACAttaa
gi|38 : -A-A-A----T-AT-TCTAATA-TACTTGTAATCAATCTTGGCA-----GGAGAAAA-TTGCCT-GTTAGGGTA--A-ATGAATGT
gi|39 : ----TAG-AACG-TGTACTTC-CCA---TC-AAGGT-CCTACG-----------GG-CAAC-AAAAGCCAGCAATAGAAT--TAtgtgga
gi|4 : GGGG-G---T-GTAT--G-TGTGGTGGTAG------------T-AGCA-CTTC-TTCTT-AA-------------------TTTTCCA-TCCAGGCGT-T-A-TAA-CATGACATGAAGGGGA-ccagcaatcat
gi|4 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttaGCACTTCTTCT-TA---A------TTTT--------------CCAT---CCAGGCGTT-AT--AACATGACATGA--------------AG--G-GG-AG----GG------------T-AGAA-TGTCCTTCTT-AATTTTCATGTTAG-ATTTTGT---CCA-ACCAGACGTCTTA-TCAATATGCTATGATGGTGATAAAT--AAGTTGTG----ATTGAACAAAGGAAAAGCTGC-CCCATTTTAGTAAACAAA-TTATATA-----A-TA-AAAAGGT--ACATTAAG--AGATAC----TAG-TAA------CATTT-AATGCAAAATAAAATCGCTA-ACGGGATATT---ATGAAAGAAATCCAGA-----A---ATAT---TA--GAATCA-TG-ATGTACAATA-A-----ATTC-TGAAAGTATA-CTT--TTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ACTT----TAT-AATG-TGTTCTTC-CTA---TC-A--GT-ACTAT------------GG-gggtagaatgtccttcttaattttcatgttagattttgtccaaccagacgtcttatcaatatgctatgatggtgataaataagttgtgattgaacaaaggaaaagctgccccattttagtaaacaaattatataataaaaaggtacattaagagatactagtaacatttaatgcaaaataaaatcgctaacgggatattatgaaagaaatccagaaatattagaatcatgatgtacaataaattctgaaagtatactttttaattgtgattatgattttttattgactttataatgtgttcttcctatcagtactatgg
gi|40 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttagggggtgtatgtgtggtggtagtaTGCAAAATA-CCCC--GAAAGA-GCTCGAGG---A---GG--TGGC-A-G-AAGGCTTTGTG-T--------TTGAAAA
gi|41 : aggtatG------------T-AACA-TATC-GTCTT-AATT------TTTA-A------TTTCCA-CTCAGACGTCT-A-TCA-TATGCCATGATGGTttt
gi|42 : tgtttG-A--AA-G-A-A----T-AT-TTTAATA------G-AAT--ATCTTGACT-----GAAGAAAA-TAATTT-TTTAGAGTA--A-ATGAAT
gi|5 : G-G---G-GGAGTCGTGG-AGTAGTTA------------T-AACA-TGTC-TTCCT-AA---------TTACATTTTGTTTTCCAGTCCAGAAAGCA-AGTGA-TATGCCAT-ATGC--A-AAATCGAAATTGTGGAAGAAAAAACGATGGAAAAACTGC-TTTA----GGTAAACAAA--TACATATGA-TG-C--------C--A-AT-AAA--AGGTAG--ATTA--TAA------CATTT-------------AATCGCTA-CTGAGATATCAAAAAAAAAAATATTC--------AGAAATAT---TA---AATCA-TG-ATCTACAATA-G-----ATTC-TCAAATC-CA-CT---TTAAATA--G-TGATTATAA-TATTTGTA--TTGAATTTTGTATAGTAGTGATGTACTTG-CGATTTGC-A--GT-CGTAC-------------G-CAACTGAAAG-CAAC-AGATATTTCTAATT----ATTGCAAAGGATACCT--AATA-A-ACCCT-GAAAAA-GCC---GAAGGA---GT--TGGC-C-A-AAGGCTTa
gi|6 : cataacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggaaaatttgatgcattactgtgtaaagaaattgtttac-TCA-TATGCCATCTTGGTGA-AAATTGAAGTTT------GGGGAACAAGGAAAA--TTGA-TAAA----GGTAAAAAAA-TT-TATACAC-TGCTA-ATAAAAT--A-ATAAAA--AGATAG--A-TA---GA------CATTT-TATTTAAAATGAAATTGCTA-ATGAGATATTAA-ATGAAAAATATC---G-----AGAAATATA--TA--TAACCA-TGTATCTACAATC-A-----ATTT-CCAAACTAAA-CTA-ATTTTATTTGG-TGGATATGATT-TTTTTA--TTG-ATT------------------------TA---GCAA--GT-CCTAT------------GG-CAACTGAAAA-CAGC-ATAGA-T--TAATT-AACATTGT-AA--ATACCTGAAAGATATTCCCT-GAAAGA-ACTTGA----GA---GG--TGGC-TGG-AAGTCTTTGTG-A--------TTTAAAAAAA-AAGCTGTTGTAAACCGTT-GAC--ATCCTTG-G--AA-A-A-A----A-ATATCTAATATTACTTGT-ATCAATCTTGAA------GGAG--AA-TTATG----TAGGGTA--A-ATG-ATGTaagttcatgcaaaataacatgta
gi|7 : AAACAAA-TTATACA----TG-TATATAGTGC--A-AT-AAA---GGTAG--A-T---TAAGATTTACATTT-TATTCAAAATAAAATCACTA-ATGAGATATC---ATGAACAATATCCAGA-----A--ATTAT---TG--GA-TCAATG-ATCTACGATA-A-----CTTC-TCAACGTATA-CTT--TTTAATT--G-------TGA-A-TTATGA--TT---TTT----TAT-TAT--TG-ATTT-----------------------------------------TGAAAG-CAGC-ATATATT--TAATT-A---TTG-GGA--ATACCTGAA-TAAA-CCC---GAAAGATGCTGGAGGAGG--------TGAT-C-G-AAG-CTATGTG-T--------TTGAAAATCA-AAT--GT-GT-AACCGTT-GACA-ACCCTTG-G--AA-A-A-AA---T-AT-TTTAATA------G-----AATTTTGACT-----AGAGAAAAATTATTT-ATTAGAGTA--A-ATGAATt
gi|8 : AACATG-TCTG---ATTGTCT------GATTTTGTTTT--------------CCAT---CCAGGTGTTTAT--AAAATGCCATGA----------G-GGAG--G-AG-GGGGGGGG----------------CA-TGTC-TTCTG-AATTTTCACATTTA-ATTTTCTTTTCCA-CCTAGATGTCT-A-TCA-TATACCATGATGGTGA-AA-----------------GAAAACAAAGGAAAAGTTGC-TTTT----GGTAAACAAA-TTATATAGAG-TG-CA-ATAAAA------------------G--A-T---TAA------CATTT-TATTCAAAATAAAATCACTA-ACGTGATATC---ATGAAAAATATCC--------AGAAATAC---TA--GAATCA-TG-ATCTACAa
gi|9 : tggttgtTTTGTTTTTCA-TCCAGACGTCT-A-TCA-TTTGCCATGATAGTGA-AAAT-GAAATTGAT----AGGAAACAAGGGAAAGGCTGC-TTTA----GGT------A-TTAAAGCCACTTG-TATATATAATGCG-AT-TGA--AGGTAGATA-TA--TAA------CA----TATTCAAAATAAAATCGCTG-ATGAGATATT---ATGAAAAATATCC--------AGAAATGCG--TA--GAATCA-TT-ATATACTATATACTAGTATTC-TCAAATTACA-CTT-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAATGAATTTCCTTGAAGGACTGCATTAAGCCAAGTTATGGAAAGAATAGAAAACTTGAACACTTTTTCCAAGCACTTATAAATTAATAATGTTTTATTCCATTATTTACGATGAGGATTATCTTATGATTTTTTTTTACAATGTGGAAGAATGAAAATATTATATCAATTGAGGCAAATTGTGTAAAGAATTTTTAGGGGGTGGGGTGGCGGTGGTTGTAA
Unaligned ( gi|14 ): TAGGATTGGTTTGTAAGTTTTGACAAAATTCAATAAATAACTGCAAATTGCCAAGTGATGGAAAGAATAGAAAATTGGGAAACATTTTCAAGCACTTCAAAATTAGTAATGTTTTATTCCGTTACGTAAGATGAGGATTATGCTATGAAATATTCTTACAATGTGGAAGAATAAAAATCATT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|23 ): ACAAAACAACTTCCCTGAATGATTGTATTAATTGCCAGGTGATGGAAAAAGTAGAAATTTGAAACACTATAAATCAATAGTTTTATTCCATTATTTAAGATGGGTATTATCTTATGATATATTTTATGGAAGAATAAATAATATTT
Alignments
lowQualScore : 1 222222 33333333333333 1111 222222222222 1111111 1111 22222222222 111 222 333333333333 3333 11 11111111 111 111111 3333333333333 111111
lowQualScore : 8 0 000000 3 2 99999999999999 1111 66 4 99999 3 0 55 3 3 4 0 777777777777 3 3 3 666 666 1 2 1 2 5 2 4 3 888 1111111 0 3 22 6666 2 8888 3 6 0 777777 5 33 33 0000 777777 2 0 1 2 33 444 55555555555 000 33 2 2 3 77777 3 0 4 2 111 1 66 4 4 4 55 3 7777 3 2 2 555 2 33 2 999999999999 2 3 2 33 7777 77 44 0 0 55 2 2 11 0 7777 33 888 2 2 11111111 0 2 444 3 3 3 2 33 5 2 111111 2 2 1 8888888888888 444444 3 4444 44 3
lowQualScore : . . ...... . . .............. .... .. . ..... . . .. . . . . ............ . . . ... ... . . . . . . . . ... ....... . . .. .... . .... . . . ...... . .. .. .... ...... . . . . .. ... ........... ... .. . . . ..... . . . . ... . .. . . . .. . .... . . . ... . .. . ............ . . . .. .... .. .. . . .. . . .. . .... .. ... . . ........ . . ... . . . . .. . . ...... . . . ............. ...... . .... .. .
lowQualScore : 0 8 555555 5 5 22222222222222 8888 99 5 22222 6 1 00 6 6 9 2 333333333333 6 6 6 222 666 1 9 1 7 0 5 6 1 333 0000000 2 1 00 5555 9 2222 1 2 4 333333 7 99 99 9999 777777 7 9 7 5 44 444 22222222222 777 99 9 9 1 77777 1 7 8 9 333 0 11 4 0 0 00 6 1111 1 9 9 000 9 99 9 333333333333 9 1 9 99 8888 00 22 2 9 88 4 4 88 3 1111 11 333 2 5 66666666 2 7 111 1 1 1 9 99 3 7 444444 7 9 4 5555555555555 888888 1 9999 66 3
consensus : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGG---G-GG-GGAG--G-GG-GGNGGGGG------------TAACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAA---TATCCAGA-----AGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT-ATTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACT-----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
Reference ( family-5328 ) : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGG---G-GG-GGAG--G-GG-GGNGGGGG------------TAACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAA---TATCCAGA-----AGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT-ATTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACT-----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
gi|1 : AACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---ACAGACGTTTAT--AAAATGCCATGATGGG---GTGG-GGAG--G-GA-GGTGGGGG------------TAACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-AATGCCAAGTTCGTGA-AAAT-GAAGTGTTG----GGGAAATAAGGGAAAAGCTGC-TAAA----GGTAAAC-ATATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TCA------C-ATTTTATTTAAAATGAAATTGCTA-ATGAGATATT--ATGGAAAA---TATCCAGATTTGCAGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----CTTC-TCAAATTAAACCTC-ATTTTATT--G-TGGTTATGG-C-ATTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-TAACTGAAAG-CAGC-ATAGATT--TATTTCAACATTGTGAA--ATACCTGAAATATA-TCCCT-GAAAGA-ACTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-G-A----T-AT-TTCAATA-TACTAGCAATCAATCTTGACA-----GGAGAAAA-TTATAT-GTTAGGGTA--A-ATGAATGT
gi|11 : gtaTTTAA--TTG-ATTT----TAG-AATG-TGTTCTTC-CTA---GC-A--AT-CCTAC------------GG-CAACTGAAAG-CAGC-ACAGATT--TAATT----ATTGCAAA--ATACCTGAAATATA-CCCCCAGAGAGA-GCT---GGAGGA---GG--TGAT-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AA--TGTTGC-GACTGTT-GACA-ATCCTTG-G--AA-A-AGA----C-AT-TTT-----TAATAG-AAT--ATTTTGACT-----AGAGAAAA-T
gi|12 : attctgc-AATG-TGTTCTTC-CTA---GC-A--GG-CCTAC------------GG-CAAATG-AAG-CAGC-ATATGTT--TAATT----ATTGGGAA--ATACCTTAAATATACCCCCT-GAAAGA-GCT---GTATGA---GA--TGAT-T-G-AAGGTTTTGTG-TG-------TTGAGAAAAG-AA--TGTTGT-AACCGTT-GAAA-ATCCTTG-G--AA-G-A--------------AATA-TATTAGTAG--AATATT------------------TTATTT-ATTATAGGG--A-ATGAAT
gi|13 : AGAAGTCA-A-TGA-TATGCCATGATGGCAA-AATC-GAAGTTGTG----AAGAAACGATGGAAAAGCTGC-TTTA----GGTAAAC-AAATTACATA-------TG-AT---GC--A-AT-AAA--AGGTAG--AT-T--TAA------C-ATTT------------AATCGCTA-CTGAGATATC--ATAAAAAA---TATTC--------AGAAATAT---TA--GAATCA-TG-ATCTACAATA-G-----ATTC-TCAAATCACA-CTT-a
gi|16 : AATTACA-CTT--TTGAATT--A-TGATTATGA-T-TTTTTAAATTG-GTTT----TAG-AATG-TGTATTTC-CTA---GC-A--GT-CCCATCCCGT-------GG-CAAATGAAAG-CAGC-ATAGATT--TAATT-A---TTGTATA--ATACCTTAAATATG-CCCCT-GAAAGA-GCT---GGAGGA---GG--TTGT-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-Att
gi|17 : TGAAATTGCTA-ATGAGATATT--ATGAAAAA---TGTCCAGA-----A---ATAT---TA--GAATCA-TG-ATCTGCAATA-A-----ATTCTTTAAA--AAA-CTTAATTTTATT--G-TGATCATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATTCAACA
gi|18 : GC-ATATATT--TAATT-A---TTGGCAA--ATGCCTGAAATATA-CCCCT-GAAAGA-GCTGGATGAGG--------------------------TG-A--------TTGAAAAAAA-AAT--GTTGT-AACTGTT-GGCA-ATCCTTGAA--AA-A-A-A----T-AT-TT------TACTGG-AAT--ATCTAAACT-----AAAGAAAA-TTATTT-ATTAAAGTA--A-ATTAA
gi|19 : GAA--TTACCAGCATCATA-CACCC-GAAAGA-GTTCGAGACGG--------TGGC-T-G-AAGGCTTTGTG-TGTTTTTGTTT-----------TCTATTGT-AACAGTT-GACA-GTCCTTG-GGAAA-A-A-A----T-AT-CCTAGTA-------TAAT--ATCTTGACT-----TGAGAAAA-TAATA--ATTAGAGTA--A-ATGAATG
gi|2 : AGCATGGTCT-CATATTTTTT-GA---ATTTTTTTTTTCGTTTATCAAAATGCCATGATNNNNNNNNNNNN--NNNNNNNNNNNNNNNN---N-NN-NNNN--N-NN-NNNNNNNT------------TAACAAGGTC-TTCTTTAACTTTCATATT--------GTTTTCCA-TACAGA----T-AGTCA-TATGCCATG-TGGTGA-AAAG-AAAGTTTTA----AGGAAACAAGGGAAAAGCTGC-TAAA----AGTAAAC-AAATTATATACAC-TG-TA-ATAAA-T--G-AT-AAA--AGATAG--AT-AACTAA------C-ATTTTATTTAAAAGGAAATTGCTA-ATGAGATATA--ATGAAAAA---TATCCAGA-----A---ATAT---TA--GGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTAAA-CTT--TTAAATT--G-TGATTCTGA-T-TTGTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTACATGTACATGTATGG-CAACTGAAAA-CAGC-ATAGATT--TAATTCAATATTGTGAA--ATA--------------CCT-GAAAGA-ATTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T--------TTG-AAAAAA-ATTCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AAGA-A-A----T-AT-TCTGA------TAATAATCAATCTTGACT-----GGAGAAAA-TTATCT-GTTAGGGTA--T-ATGAATGT
gi|20 : tgtTTCATATTTA-ATTTTGTTTTCCA-TAAAGTCGTAT-A-TCA-TATGCCATGGTGGTGA-AA-T-GAAGTTTTG----AGGAAAGAAGGGAAAAGCTGA-TAAA----GGTAAAC-AGATTATATACAC-AG-TA-ATAGAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTTAtg
gi|21 : -T-TTTTTA--TTG-ATTT----TAT-AATG-TGTACTTC-TTA---GC-A--GT-CCTAT------------GA-C-ACTGAAAG-CAGC-ATAGATT--TAATTCAACATAGTGAA--ATACCTGAAGTATA--TCCT-GAAAGA-ACTTGAGGAGGAGGTGG--TGGC-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-
gi|22 : AACATA-TCTTCTTAATTTTCATAGTTAATTTTGTTTT--------------CCAT---CCAGGTGTTTTT--TAAATTTCAT--TGGG---G-GG-GGGG--G-GG-G
gi|24 : ttatatcaattgaggcagattgtgtaaagatttttattatttttatgtggtggtgtttgtG---G-GG-ATAG--G-GG-GGGGGAGGT-----------TAACA-TGTA-TTCTC-AATTATCTTATTTG-ATTTTGTTTTTCA-TTCAGAC-T----------------TGATGGAGA-ACAT-GAATTTCAA----AGGACACAAGGGAAAAG-TGCGTTTG----GCTAAAC--AATTCTATcttgtcttct
gi|25 : gtgttttttctttCCCG-GAAAGA-CTTGTA--AGGA---CG--TGGCAC-G-AAGGCTTATTT-T--------TTTAGAAAAT-GAT---TTGT-AATCGTTTGACACATCCTTG-G--AA-A-A-T----TTAT-TCTAAGA-TA--AGCACT-----TTGACTTAGA-GAAGAAAA-TTATATCATTA-AGTA--A-ATGAg
gi|26 : CCT-GAAAGA-CTTGTAGGACG--------TGGC-CCG-AAGGCTTTGTG-T--------TTTTATAAAATGAT--GTTGT-AATCGTT-GACA-ATCCTTG-G--AA-A-ATT----T-AT-TCTAAGA-TA--AG------ACTTTGACTTAAGGAGAGAAAA-TTATTC-ATTAGAGTA--A-ATGAAc
gi|27 : TA-TGTACTTC-CTA---GC-A--GT-CGTAC------------GG-CAACTGAAAG-CAAC-AGATATC--TAATT----ATTGCAAA--ATACCTTAAATAAA-CCCCT-GAAAAA-GCC---GAAGGA---GG--TGGC-C-A-AAGGCTTT
gi|28 : AACAAGGGAAAAGCTGC-TAAA----GGTAAAC-AAGTTATATACAC-TG-TA-ATAAAAT--A-AT-GAA------------------------------TTATTTAAAATGAAATTGCTA-GTGAGATATT--ATGAAAAA---TATCCAGA-----Aaatcattgcaaaatacatgt
gi|29 : --AAAATGCCATGATGGG---GTGGTGGAG--G-GG-GGAGGGGAGT----------TAACA-TGTC-TTCTT-AACATTCATATTCG-ATTTTATTTTCCA-TCCAGACGTCT-A-CTG-TATGCCATata
gi|3 : AGCATG-TCT-CATATTTTTT-GA---GATTTTCTTTT--------------TC-----------GTTTATTCAAAATGCCATGATGGGGGAG-GG-GGAG--G-GG-GGAGGGGAAGGAGGGGGGGTTAACA-AGTC-TTCTT-TACATTCATA--------TTGTTTT-CA-TACAGA---CT-A--CA-TATGCCATG-TGGTAA-AGA---AAGTTTTA----AGGAAACAAGGGAAAAG-TGC-TAAA----AGTAAACAAAATTATATACAC-TG-TA-AT-AAAT--G-AT-AAA--AGATAG--A--A--TAA------CAAACATATTTTAAAAGGAATTGCTACAT-AGATATA--ATGAAAAA---TATCCAG---------AATCT---TA--GGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTA-A-CTT-A---AATT--GCTGATTCTGA-T-TTGTTA--TTG-A-TT----TAG-AATG-TGTACTTCGCTA---GC----GTACCTACATGTACATGTATGGCCAACTGAAAA-CAGC-ATAGATT--TAATT--ATATTGTGAA--ATACCTGAAA------------AAA----TTGGA-GAGGA---GGTTTGGC-T-GAAAGGTTTTGTGTT--------TTG--AAAAA-ATTCTGTTGT-AAC--TT-GACA-ATCCTTG-G--AAGA-A-A----T-AT-TCTGATA-----AG-AATC-ATCTTA--T-----GGAGAAAA-TTATCT-GTTAGGGTATTATATGAATGT
gi|30 : tgt-A--TAA------C-ATTTTATTTAAAATGAAATTGCTC-ATGAGATACT--ATGAAAAA---TATC---A-----AAAAATACATGTATCAAATCG-TG-ATCTACAATA-A-----ATTC-TCAAATTAAA-CTtgtg
gi|31 : GGA---GG--TGGC-T-G-AAGGCTTTGTG-T--------TTGAATAAAA-G-TCTGTTGT-AACCGTT-GACA-ATTCTTG-A--AA-A-A-AAAAAT-AC-TCTAATA-TACTAGTAATCAATCTTGAC
gi|32 : CGTTTAT--AAAATGCCATGATGGG---G-GT--------------TGGGGG------------TAACA-TGTC-TTCTT-AACTTTTATATCTA-ATTTTGTTTTCCA-TCCAGACATCT-A-TCA-TATGCCATGag
gi|33 : aT--G-AT-AAA--AGGTAG--AT-A--CTA------C-ATT------------AAATTGCTA-ATGAGG-AGT--CTGAAAA-----ACCC--------AGAAATAC-------G---TA-TG-ATCCACATTA-T-----ATGC-TCAAATAACA-CTtt
gi|34 : atatactgTACCTGAAATATA-CCGCT-GAAAGA-GCTAGAGGAGGC---GA--T----C-A-AAGGCTTTGTG-T--------TTGAAAAAAA-AAT-TGCTGT-AACCGTT-GACA-ATCCCTG-G--AA-AGA-A----T-A
gi|35 : TATATATAG-TG-CA-ATAAAG---G-GT-AAATTA---AG--AT-G--TAA------A-ATTTTATTCAAAATAAAATCACTA-ACGACA---T--ATGAAAAA---TATCCACA-----A
gi|36 : taCAAAATGAG--CGCTA-ATGAGCTATT--ATGAAAAC---TATCCAGG-----A-----AT---TA--GAATTA-TG-ATCTACAATG-A-----ATTC-ACAAAGTACA-CT---TTTAAa
gi|37 : CA-TTTAGACGTCT-A-TCA-TATGCCATATTGGTGA-AAAT-GAAGTTTTG----GGGGAACAAGGGAAAAGCTGC-TAAA----GGTAAAC-A
gi|38 : -A-A-A----T-AT-TCTAATA-TACTTGTAATCAATCTTGGCA-----GGAGAAAA-TTGCCT-GTTAGGGTA--A-ATGAATGT
gi|39 : ----TAG-AACG-TGTACTTC-CCA---TC-AAGGT-CCTACG-----------GG-CAAC-AAAAGCCAGCAATAGAAT--TAtgtgga
gi|4 : GGG---G-GT-GTAT--G-TGTGGTGGTAG------------TAGCA-CTTC-TTCTT-AA-------------------TTTTCCA-TCCAGGCGT-T-A-TAA-CATGACATGAAGGGGA-ccagcaatcat
gi|4 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttaGCACTTCTTCT-TA---A------TTTT--------------CCAT---CCAGGCGTT-AT--AACATGACATGA--------------AG--G-GG-AG----GG------------TAGAA-TGTCCTTCTT-AATTTTCATGTTAG-ATTTTGT---CCA-ACCAGACGTCTTA-TCAATATGCTATGATGGTGATAAAT--AAGTTGTG----ATTGAACAAAGGAAAAGCTGC-CCCATTTTAGTAAAC-AAATTATATA-----A-TA-AAAAGGT--ACATTAAG--AGATAC---T-AG-TAA------C-ATTTAATGCAAAATAAAATCGCTA-ACGGGATATT--ATGAAAGA---AATCCAGA-----A---ATAT---TA--GAATCA-TG-ATGTACAATA-A-----ATTC-TGAAAGTATA-CTT--TTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ACTT----TAT-AATG-TGTTCTTC-CTA---TC-A--GT-ACTAT------------GG-gggtagaatgtccttcttaattttcatgttagattttgtccaaccagacgtcttatcaatatgctatgatggtgataaataagttgtgattgaacaaaggaaaagctgccccattttagtaaacaaattatataataaaaaggtacattaagagatactagtaacatttaatgcaaaataaaatcgctaacgggatattatgaaagaaatccagaaatattagaatcatgatgtacaataaattctgaaagtatactttttaattgtgattatgattttttattgactttataatgtgttcttcctatcagtactatgg
gi|40 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttagggggtgtatgtgtggtggtagtaTGCAAAATA-CCCC--GAAAGA-GCTCGAGG---A---GG--TGGC-A-G-AAGGCTTTGTG-T--------TTGAAAA
gi|41 : aggtatG------------TAACA-TATC-GTCTT-AATT------TTTA-A------TTTCCA-CTCAGACGTCT-A-TCA-TATGCCATGATGGTttt
gi|42 : tgtttG-A--AA-G-A-A----T-AT-TTTAATA------G-AAT--ATCTTGACT-----GAAGAAAA-TAATTT-TTTAGAGTA--A-ATGAAT
gi|5 : ---G-GG-GGAGTCGTGG-AGTAGTTA------------TAACA-TGTC-TTCCT-AA---------TTACATTTTGTTTTCCAGTCCAGAAAGCA-AGTGA-TATGCCAT-ATGC--A-AAATCGAAATTGTGGAAGAAAAAACGATGGAAAAACTGC-TTTA----GGTAAAC-AAAT-ACATATGA-TG-C--------C--A-AT-AAA--AGGTAG--ATTA--TAA------C-ATTT------------AATCGCTA-CTGAGATATC--AAAAAAAAAAATATTCAGA-----A---ATAT---TA---AATCA-TG-ATCTACAATA-G-----ATTC-TCAAATC-CA-CT---TTAAATA--G-TGATTATAA-TATTTGTA--TTGAATTTTGTATAGTAGTGATGTACTTG-CGATTTGC-A--GT-CGTAC-------------G-CAACTGAAAG-CAAC-AGATATTTCTAATT----ATTGCAAAGGATACCT--AATA-A-ACCCT-GAAAAA-GCC---GAAGGA---GT--TGGC-C-A-AAGGCTTa
gi|6 : cataacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggaaaatttgatgcattactgtgtaaagaaattgtttac-TCA-TATGCCATCTTGGTGA-AAATTGAAGTTT------GGGGAACAAGGAAAA--TTGA-TAAA----GGTAAAA-AAATT-TATACAC-TGCTA-ATAAAAT--A-ATAAAA--AGATAG--AT-A---GA------C-ATTTTATTTAAAATGAAATTGCTA-ATGAGATATTAAATGAAAAA---TATC---G-----AGAAATATA--TA--TAACCA-TGTATCTACAATC-A-----ATTT-CCAAACTAAA-CTA-ATTTTATTTGG-TGGATATGATT-TTTTTA--TTG-ATT------------------------TA---GCAA--GT-CCTAT------------GG-CAACTGAAAA-CAGC-ATAGA-T--TAATT-AACATTGT-AA--ATACCTGAAAGATATTCCCT-GAAAGA-ACTTGA----GA---GG--TGGC-TGG-AAGTCTTTGTG-A--------TTTAAAAAAA-AAGCTGTTGTAAACCGTT-GAC--ATCCTTG-G--AA-A-A-A----A-ATATCTAATATTACTTGT-ATCAATCTTGAA------GGAG--AA-TTATG----TAGGGTA--A-ATG-ATGTaagttcatgcaaaataacatgta
gi|7 : AAAC-AAATTATACA----TG-TATATAGTGC--A-AT-AAA---GGTAG--AT----TAAGATTTAC-ATTTTATTCAAAATAAAATCACTA-ATGAGATATC--ATGAACAA---TATCCAGA-----A--ATTAT---TG--GA-TCAATG-ATCTACGATA-A-----CTTC-TCAACGTATA-CTT--TTTAATT--G-------TGA-A-TTATGA--TT---TTT----TAT-TAT--TG-ATTT-----------------------------------------TGAAAG-CAGC-ATATATT--TAATT-A---TTG-GGA--ATACCTGAA-TAAA-CCC---GAAAGATGCTGGAGGAGG--------TGAT-C-G-AAG-CTATGTG-T--------TTGAAAATCA-AAT--GT-GT-AACCGTT-GACA-ACCCTTG-G--AA-A-A-AA---T-AT-TTTAATA------G-----AATTTTGACT-----AGAGAAAAATTATTT-ATTAGAGTA--A-ATGAATt
gi|8 : AACATG-TCTG---ATTGTCT------GATTTTGTTTT--------------CCAT---CCAGGTGTTTAT--AAAATGCCATGA----------G-GGAG--G-AG-GGGGGGGG---------------CA-TGTC-TTCTG-AATTTTCACATTTA-ATTTTCTTTTCCA-CCTAGATGTCT-A-TCA-TATACCATGATGGTGA-AA-----------------GAAAACAAAGGAAAAGTTGC-TTTT----GGTAAAC-AAATTATATAGAG-TG-CA-ATAAAA------------------G--AT----TAA------C-ATTTTATTCAAAATAAAATCACTA-ACGTGATATC--ATGAAAAA---TATCC--------AGAAATAC---TA--GAATCA-TG-ATCTACAa
gi|9 : tggttgtTTTGTTTTTCA-TCCAGACGTCT-A-TCA-TTTGCCATGATAGTGA-AAAT-GAAATTGAT----AGGAAACAAGGGAAAGGCTGC-TTTA----GGT-------ATTAAAGCCACTTG-TATATATAATGCG-AT-TGA--AGGTAGATAT-A--TAA------C-A---TATTCAAAATAAAATCGCTG-ATGAGATATT--ATGAAAAA---TATCC--------AGAAATGCG--TA--GAATCA-TT-ATATACTATATACTAGTATTC-TCAAATTACA-CTT-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAATGAATTTCCTTGAAGGACTGCATTAAGCCAAGTTATGGAAAGAATAGAAAACTTGAACACTTTTTCCAAGCACTTATAAATTAATAATGTTTTATTCCATTATTTACGATGAGGATTATCTTATGATTTTTTTTTACAATGTGGAAGAATGAAAATATTATATCAATTGAGGCAAATTGTGTAAAGAATTTTTAGGGGGTGGGGTGGCGGTGGTTGTAA
Unaligned ( gi|14 ): TAGGATTGGTTTGTAAGTTTTGACAAAATTCAATAAATAACTGCAAATTGCCAAGTGATGGAAAGAATAGAAAATTGGGAAACATTTTCAAGCACTTCAAAATTAGTAATGTTTTATTCCGTTACGTAAGATGAGGATTATGCTATGAAATATTCTTACAATGTGGAAGAATAAAAATCATT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|23 ): ACAAAACAACTTCCCTGAATGATTGTATTAATTGCCAGGTGATGGAAAAAGTAGAAATTTGAAACACTATAAATCAATAGTTTTATTCCATTATTTAAGATGGGTATTATCTTATGATATATTTTATGGAAGAATAAATAATATTT
Alignments
lowQualScore : 1 222222 33333333333333 1111 222222222222 1111111 1111 22222222222 111 222 333333333333 3333 11 11111111 111 111111 3333333333333 111111
lowQualScore : 8 0 000000 3 2 99999999999999 1111 66 4 99999 3 0 55 3 3 4 0 777777777777 3 3 3 666 666 1 2 1 2 5 2 4 3 888 1111111 0 3 22 6666 2 8888 3 6 0 777777 5 33 33 0000 777777 2 0 1 2 33 444 55555555555 000 33 2 2 3 77777 3 0 4 2 111 1 66 4 4 4 55 3 7777 3 2 2 555 2 33 2 999999999999 2 3 2 33 7777 77 44 0 0 55 2 2 11 0 7777 33 888 2 2 11111111 0 2 444 3 3 3 2 33 5 2 111111 2 2 1 8888888888888 444444 3 4444 44 3
lowQualScore : . . ...... . . .............. .... .. . ..... . . .. . . . . ............ . . . ... ... . . . . . . . . ... ....... . . .. .... . .... . . . ...... . .. .. .... ...... . . . . .. ... ........... ... .. . . . ..... . . . . ... . .. . . . .. . .... . . . ... . .. . ............ . . . .. .... .. .. . . .. . . .. . .... .. ... . . ........ . . ... . . . . .. . . ...... . . . ............. ...... . .... .. .
lowQualScore : 0 8 555555 5 5 22222222222222 8888 99 5 22222 6 1 00 6 6 9 2 333333333333 6 6 6 222 666 1 9 1 7 0 5 6 1 333 0000000 2 1 00 5555 9 2222 1 2 4 333333 7 99 99 9999 777777 7 9 7 5 44 444 22222222222 777 99 9 9 1 77777 1 7 8 9 333 0 11 4 0 0 00 6 1111 1 9 9 000 9 99 9 333333333333 9 1 9 99 8888 00 22 2 9 88 4 4 88 3 1111 11 333 2 5 66666666 2 7 111 1 1 1 9 99 3 7 444444 7 9 4 5555555555555 888888 1 9999 66 3
consensus : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGG---G-GG-GGAG--G-GG-GGNGGGGG------------TAACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAA---TATCCAGA-----AGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT-ATTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACT-----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
Reference ( family-5328 ) : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGG---G-GG-GGAG--G-GG-GGNGGGGG------------TAACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAA---TATCCAGA-----AGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT-ATTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACT-----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
gi|1 : AACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---ACAGACGTTTAT--AAAATGCCATGATGGG---GTGG-GGAG--G-GA-GGTGGGGG------------TAACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-AATGCCAAGTTCGTGA-AAAT-GAAGTGTTG----GGGAAATAAGGGAAAAGCTGC-TAAA----GGTAAAC-ATATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TCA------C-ATTTTATTTAAAATGAAATTGCTA-ATGAGATATT--ATGGAAAA---TATCCAGATTTGCAGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----CTTC-TCAAATTAAACCTC-ATTTTATT--G-TGGTTATGG-C-ATTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-TAACTGAAAG-CAGC-ATAGATT--TATTTCAACATTGTGAA--ATACCTGAAATATA-TCCCT-GAAAGA-ACTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-G-A----T-AT-TTCAATA-TACTAGCAATCAATCTTGACA-----GGAGAAAA-TTATAT-GTTAGGGTA--A-ATGAATGT
gi|11 : gtaTTTAA--TTG-ATTT----TAG-AATG-TGTTCTTC-CTA---GC-A--AT-CCTAC------------GG-CAACTGAAAG-CAGC-ACAGATT--TAATT----ATTGCAAA--ATACCTGAAATATA-CCCCCAGAGAGA-GCT---GGAGGA---GG--TGAT-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AA--TGTTGC-GACTGTT-GACA-ATCCTTG-G--AA-A-AGA----C-AT-TTT-----TAATAG-AAT--ATTTTGACT-----AGAGAAAA-T
gi|12 : attctgc-AATG-TGTTCTTC-CTA---GC-A--GG-CCTAC------------GG-CAAATG-AAG-CAGC-ATATGTT--TAATT----ATTGGGAA--ATACCTTAAATATACCCCCT-GAAAGA-GCT---GTATGA---GA--TGAT-T-G-AAGGTTTTGTG-TG-------TTGAGAAAAG-AA--TGTTGT-AACCGTT-GAAA-ATCCTTG-G--AA-G-A--------------AATA-TATTAGTAG--AATATT------------------TTATTT-ATTATAGGG--A-ATGAAT
gi|13 : AGAAGTCA-A-TGA-TATGCCATGATGGCAA-AATC-GAAGTTGTG----AAGAAACGATGGAAAAGCTGC-TTTA----GGTAAAC-AAATTACATA-------TG-AT---GC--A-AT-AAA--AGGTAG--AT-T--TAA------C-ATTT------------AATCGCTA-CTGAGATATC--ATAAAAAA---TATTC--------AGAAATAT---TA--GAATCA-TG-ATCTACAATA-G-----ATTC-TCAAATCACA-CTT-a
gi|16 : AATTACA-CTT--TTGAATT--A-TGATTATGA-T-TTTTTAAATTG-GTTT----TAG-AATG-TGTATTTC-CTA---GC-A--GT-CCCATCCCGT-------GG-CAAATGAAAG-CAGC-ATAGATT--TAATT-A---TTGTATA--ATACCTTAAATATG-CCCCT-GAAAGA-GCT---GGAGGA---GG--TTGT-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-Att
gi|17 : TGAAATTGCTA-ATGAGATATT--ATGAAAAA---TGTCCAGA-----A---ATAT---TA--GAATCA-TG-ATCTGCAATA-A-----ATTCTTTAAA--AAA-CTTAATTTTATT--G-TGATCATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATTCAACA
gi|18 : GC-ATATATT--TAATT-A---TTGGCAA--ATGCCTGAAATATA-CCCCT-GAAAGA-GCTGGATGAGG--------------------------TG-A--------TTGAAAAAAA-AAT--GTTGT-AACTGTT-GGCA-ATCCTTGAA--AA-A-A-A----T-AT-TT------TACTGG-AAT--ATCTAAACT-----AAAGAAAA-TTATTT-ATTAAAGTA--A-ATTAA
gi|19 : GAA--TTACCAGCATCATA-CACCC-GAAAGA-GTTCGAGACGG--------TGGC-T-G-AAGGCTTTGTG-TGTTTTTGTTT-----------TCTATTGT-AACAGTT-GACA-GTCCTTG-GGAAA-A-A-A----T-AT-CCTAGTA-------TAAT--ATCTTGACT-----TGAGAAAA-TAATA--ATTAGAGTA--A-ATGAATG
gi|2 : AGCATGGTCT-CATATTTTTT-GA---ATTTTTTTTTTCGTTTATCAAAATGCCATGATNNNNNNNNNNNN--NNNNNNNNNNNNNNNN---N-NN-NNNN--N-NN-NNNNNNNT------------TAACAAGGTC-TTCTTTAACTTTCATATT--------GTTTTCCA-TACAGA----T-AGTCA-TATGCCATG-TGGTGA-AAAG-AAAGTTTTA----AGGAAACAAGGGAAAAGCTGC-TAAA----AGTAAAC-AAATTATATACAC-TG-TA-ATAAA-T--G-AT-AAA--AGATAG--AT-AACTAA------C-ATTTTATTTAAAAGGAAATTGCTA-ATGAGATATA--ATGAAAAA---TATCCAGA-----A---ATAT---TA--GGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTAAA-CTT--TTAAATT--G-TGATTCTGA-T-TTGTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTACATGTACATGTATGG-CAACTGAAAA-CAGC-ATAGATT--TAATTCAATATTGTGAA--ATA--------------CCT-GAAAGA-ATTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T--------TTG-AAAAAA-ATTCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AAGA-A-A----T-AT-TCTGA------TAATAATCAATCTTGACT-----GGAGAAAA-TTATCT-GTTAGGGTA--T-ATGAATGT
gi|20 : tgtTTCATATTTA-ATTTTGTTTTCCA-TAAAGTCGTAT-A-TCA-TATGCCATGGTGGTGA-AA-T-GAAGTTTTG----AGGAAAGAAGGGAAAAGCTGA-TAAA----GGTAAAC-AGATTATATACAC-AG-TA-ATAGAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTTAtg
gi|21 : -T-TTTTTA--TTG-ATTT----TAT-AATG-TGTACTTC-TTA---GC-A--GT-CCTAT------------GA-C-ACTGAAAG-CAGC-ATAGATT--TAATTCAACATAGTGAA--ATACCTGAAGTATA--TCCT-GAAAGA-ACTTGAGGAGGAGGTGG--TGGC-T-G-AAGGCTTTGTG-T--------TTGAAAAAAA-
gi|22 : AACATA-TCTTCTTAATTTTCATAGTTAATTTTGTTTT--------------CCAT---CCAGGTGTTTTT--TAAATTTCAT--TGGG---G-GG-GGGG--G-GG-G
gi|24 : ttatatcaattgaggcagattgtgtaaagatttttattatttttatgtggtggtgtttgtG---G-GG-ATAG--G-GG-GGGGGAGGT-----------TAACA-TGTA-TTCTC-AATTATCTTATTTG-ATTTTGTTTTTCA-TTCAGAC-T----------------TGATGGAGA-ACAT-GAATTTCAA----AGGACACAAGGGAAAAG-TGCGTTTG----GCTAAAC--AATTCTATcttgtcttct
gi|25 : gtgttttttctttCCCG-GAAAGA-CTTGTA--AGGA---CG--TGGCAC-G-AAGGCTTATTT-T--------TTTAGAAAAT-GAT---TTGT-AATCGTTTGACACATCCTTG-G--AA-A-A-T----TTAT-TCTAAGA-TA--AGCACT-----TTGACTTAGA-GAAGAAAA-TTATATCATTA-AGTA--A-ATGAg
gi|26 : CCT-GAAAGA-CTTGTAGGACG--------TGGC-CCG-AAGGCTTTGTG-T--------TTTTATAAAATGAT--GTTGT-AATCGTT-GACA-ATCCTTG-G--AA-A-ATT----T-AT-TCTAAGA-TA--AG------ACTTTGACTTAAGGAGAGAAAA-TTATTC-ATTAGAGTA--A-ATGAAc
gi|27 : TA-TGTACTTC-CTA---GC-A--GT-CGTAC------------GG-CAACTGAAAG-CAAC-AGATATC--TAATT----ATTGCAAA--ATACCTTAAATAAA-CCCCT-GAAAAA-GCC---GAAGGA---GG--TGGC-C-A-AAGGCTTT
gi|28 : AACAAGGGAAAAGCTGC-TAAA----GGTAAAC-AAGTTATATACAC-TG-TA-ATAAAAT--A-AT-GAA------------------------------TTATTTAAAATGAAATTGCTA-GTGAGATATT--ATGAAAAA---TATCCAGA-----Aaatcattgcaaaatacatgt
gi|29 : --AAAATGCCATGATGGG---GTGGTGGAG--G-GG-GGAGGGGAGT----------TAACA-TGTC-TTCTT-AACATTCATATTCG-ATTTTATTTTCCA-TCCAGACGTCT-A-CTG-TATGCCATata
gi|3 : AGCATG-TCT-CATATTTTTT-GA---GATTTTCTTTT--------------TC-----------GTTTATTCAAAATGCCATGATGGGGGAG-GG-GGAG--G-GG-GGAGGGGAAGGAGGGGGGGTTAACA-AGTC-TTCTT-TACATTCATA--------TTGTTTT-CA-TACAGA---CT-A--CA-TATGCCATG-TGGTAA-AGA---AAGTTTTA----AGGAAACAAGGGAAAAG-TGC-TAAA----AGTAAACAAAATTATATACAC-TG-TA-AT-AAAT--G-AT-AAA--AGATAG--A--A--TAA------CAAACATATTTTAAAAGGAATTGCTACAT-AGATATA--ATGAAAAA---TATCCAG---------AATCT---TA--GGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTA-A-CTT-A---AATT--GCTGATTCTGA-T-TTGTTA--TTG-A-TT----TAG-AATG-TGTACTTCGCTA---GC----GTACCTACATGTACATGTATGGCCAACTGAAAA-CAGC-ATAGATT--TAATT--ATATTGTGAA--ATACCTGAAA------------AAA----TTGGA-GAGGA---GGTTTGGC-T-GAAAGGTTTTGTGTT--------TTG--AAAAA-ATTCTGTTGT-AAC--TT-GACA-ATCCTTG-G--AAGA-A-A----T-AT-TCTGATA-----AG-AATC-ATCTTA--T-----GGAGAAAA-TTATCT-GTTAGGGTATTATATGAATGT
gi|30 : tgt-A--TAA------C-ATTTTATTTAAAATGAAATTGCTC-ATGAGATACT--ATGAAAAA---TATC---A-----AAAAATACATGTATCAAATCG-TG-ATCTACAATA-A-----ATTC-TCAAATTAAA-CTtgtg
gi|31 : GGA---GG--TGGC-T-G-AAGGCTTTGTG-T--------TTGAATAAAA-G-TCTGTTGT-AACCGTT-GACA-ATTCTTG-A--AA-A-A-AAAAAT-AC-TCTAATA-TACTAGTAATCAATCTTGAC
gi|32 : CGTTTAT--AAAATGCCATGATGGG---G-GT--------------TGGGGG------------TAACA-TGTC-TTCTT-AACTTTTATATCTA-ATTTTGTTTTCCA-TCCAGACATCT-A-TCA-TATGCCATGag
gi|33 : aT--G-AT-AAA--AGGTAG--AT-A--CTA------C-ATT------------AAATTGCTA-ATGAGG-AGT--CTGAAAA-----ACCC--------AGAAATAC-------G---TA-TG-ATCCACATTA-T-----ATGC-TCAAATAACA-CTtt
gi|34 : atatactgTACCTGAAATATA-CCGCT-GAAAGA-GCTAGAGGAGGC---GA--T----C-A-AAGGCTTTGTG-T--------TTGAAAAAAA-AAT-TGCTGT-AACCGTT-GACA-ATCCCTG-G--AA-AGA-A----T-A
gi|35 : TATATATAG-TG-CA-ATAAAG---G-GT-AAATTA---AG--AT-G--TAA------A-ATTTTATTCAAAATAAAATCACTA-ACGACA---T--ATGAAAAA---TATCCACA-----A
gi|36 : taCAAAATGAG--CGCTA-ATGAGCTATT--ATGAAAAC---TATCCAGG-----A-----AT---TA--GAATTA-TG-ATCTACAATG-A-----ATTC-ACAAAGTACA-CT---TTTAAa
gi|37 : CA-TTTAGACGTCT-A-TCA-TATGCCATATTGGTGA-AAAT-GAAGTTTTG----GGGGAACAAGGGAAAAGCTGC-TAAA----GGTAAAC-A
gi|38 : -A-A-A----T-AT-TCTAATA-TACTTGTAATCAATCTTGGCA-----GGAGAAAA-TTGCCT-GTTAGGGTA--A-ATGAATGT
gi|39 : ----TAG-AACG-TGTACTTC-CCA---TC-AAGGT-CCTACG-----------GG-CAAC-AAAAGCCAGCAATAGAAT--TAtgtgga
gi|4 : GGG---G-GT-GTAT--G-TGTGGTGGTAG------------TAGCA-CTTC-TTCTT-AA-------------------TTTTCCA-TCCAGGCGT-T-A-TAA-CATGACATGAAGGGGA-ccagcaatcat
gi|4 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttaGCACTTCTTCT-TA---A------TTTT--------------CCAT---CCAGGCGTT-AT--AACATGACATGA--------------AG--G-GG-AG----GG------------TAGAA-TGTCCTTCTT-AATTTTCATGTTAG-ATTTTGT---CCA-ACCAGACGTCTTA-TCAATATGCTATGATGGTGATAAAT--AAGTTGTG----ATTGAACAAAGGAAAAGCTGC-CCCATTTTAGTAAAC-AAATTATATA-----A-TA-AAAAGGT--ACATTAAG--AGATAC---T-AG-TAA------C-ATTTAATGCAAAATAAAATCGCTA-ACGGGATATT--ATGAAAGA---AATCCAGA-----A---ATAT---TA--GAATCA-TG-ATGTACAATA-A-----ATTC-TGAAAGTATA-CTT--TTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ACTT----TAT-AATG-TGTTCTTC-CTA---TC-A--GT-ACTAT------------GG-gggtagaatgtccttcttaattttcatgttagattttgtccaaccagacgtcttatcaatatgctatgatggtgataaataagttgtgattgaacaaaggaaaagctgccccattttagtaaacaaattatataataaaaaggtacattaagagatactagtaacatttaatgcaaaataaaatcgctaacgggatattatgaaagaaatccagaaatattagaatcatgatgtacaataaattctgaaagtatactttttaattgtgattatgattttttattgactttataatgtgttcttcctatcagtactatgg
gi|40 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttagggggtgtatgtgtggtggtagtaTGCAAAATA-CCCC--GAAAGA-GCTCGAGG---A---GG--TGGC-A-G-AAGGCTTTGTG-T--------TTGAAAA
gi|41 : aggtatG------------TAACA-TATC-GTCTT-AATT------TTTA-A------TTTCCA-CTCAGACGTCT-A-TCA-TATGCCATGATGGTttt
gi|42 : tgtttG-A--AA-G-A-A----T-AT-TTTAATA------G-AAT--ATCTTGACT-----GAAGAAAA-TAATTT-TTTAGAGTA--A-ATGAAT
gi|5 : ---G-GG-GGAGTCGTGG-AGTAGTTA------------TAACA-TGTC-TTCCT-AA---------TTACATTTTGTTTTCCAGTCCAGAAAGCA-AGTGA-TATGCCAT-ATGC--A-AAATCGAAATTGTGGAAGAAAAAACGATGGAAAAACTGC-TTTA----GGTAAAC-AAAT-ACATATGA-TG-C--------C--A-AT-AAA--AGGTAG--ATTA--TAA------C-ATTT------------AATCGCTA-CTGAGATATC--AAAAAAAAAAATATTCAGA-----A---ATAT---TA---AATCA-TG-ATCTACAATA-G-----ATTC-TCAAATC-CA-CT---TTAAATA--G-TGATTATAA-TATTTGTA--TTGAATTTTGTATAGTAGTGATGTACTTG-CGATTTGC-A--GT-CGTAC-------------G-CAACTGAAAG-CAAC-AGATATTTCTAATT----ATTGCAAAGGATACCT--AATA-A-ACCCT-GAAAAA-GCC---GAAGGA---GT--TGGC-C-A-AAGGCTTa
gi|6 : cataacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggaaaatttgatgcattactgtgtaaagaaattgtttac-TCA-TATGCCATCTTGGTGA-AAATTGAAGTTT------GGGGAACAAGGAAAA--TTGA-TAAA----GGTAAAA-AAATT-TATACAC-TGCTA-ATAAAAT--A-ATAAAA--AGATAG--AT-A---GA------C-ATTTTATTTAAAATGAAATTGCTA-ATGAGATATTAAATGAAAAA---TATC---G-----AGAAATATA--TA--TAACCA-TGTATCTACAATC-A-----ATTT-CCAAACTAAA-CTA-ATTTTATTTGG-TGGATATGATT-TTTTTA--TTG-ATT------------------------TA---GCAA--GT-CCTAT------------GG-CAACTGAAAA-CAGC-ATAGA-T--TAATT-AACATTGT-AA--ATACCTGAAAGATATTCCCT-GAAAGA-ACTTGA----GA---GG--TGGC-TGG-AAGTCTTTGTG-A--------TTTAAAAAAA-AAGCTGTTGTAAACCGTT-GAC--ATCCTTG-G--AA-A-A-A----A-ATATCTAATATTACTTGT-ATCAATCTTGAA------GGAG--AA-TTATG----TAGGGTA--A-ATG-ATGTaagttcatgcaaaataacatgta
gi|7 : AAAC-AAATTATACA----TG-TATATAGTGC--A-AT-AAA---GGTAG--AT----TAAGATTTAC-ATTTTATTCAAAATAAAATCACTA-ATGAGATATC--ATGAACAA---TATCCAGA-----A--ATTAT---TG--GA-TCAATG-ATCTACGATA-A-----CTTC-TCAACGTATA-CTT--TTTAATT--G-------TGA-A-TTATGA--TT---TTT----TAT-TAT--TG-ATTT-----------------------------------------TGAAAG-CAGC-ATATATT--TAATT-A---TTG-GGA--ATACCTGAA-TAAA-CCC---GAAAGATGCTGGAGGAGG--------TGAT-C-G-AAG-CTATGTG-T--------TTGAAAATCA-AAT--GT-GT-AACCGTT-GACA-ACCCTTG-G--AA-A-A-AA---T-AT-TTTAATA------G-----AATTTTGACT-----AGAGAAAAATTATTT-ATTAGAGTA--A-ATGAATt
gi|8 : AACATG-TCTG---ATTGTCT------GATTTTGTTTT--------------CCAT---CCAGGTGTTTAT--AAAATGCCATGA----------G-GGAG--G-AG-GGGGGGGG---------------CA-TGTC-TTCTG-AATTTTCACATTTA-ATTTTCTTTTCCA-CCTAGATGTCT-A-TCA-TATACCATGATGGTGA-AA-----------------GAAAACAAAGGAAAAGTTGC-TTTT----GGTAAAC-AAATTATATAGAG-TG-CA-ATAAAA------------------G--AT----TAA------C-ATTTTATTCAAAATAAAATCACTA-ACGTGATATC--ATGAAAAA---TATCC--------AGAAATAC---TA--GAATCA-TG-ATCTACAa
gi|9 : tggttgtTTTGTTTTTCA-TCCAGACGTCT-A-TCA-TTTGCCATGATAGTGA-AAAT-GAAATTGAT----AGGAAACAAGGGAAAGGCTGC-TTTA----GGT-------ATTAAAGCCACTTG-TATATATAATGCG-AT-TGA--AGGTAGATAT-A--TAA------C-A---TATTCAAAATAAAATCGCTG-ATGAGATATT--ATGAAAAA---TATCC--------AGAAATGCG--TA--GAATCA-TT-ATATACTATATACTAGTATTC-TCAAATTACA-CTT-
blockSeqs : G T ATAGTT T T CGTTTATCAAAATG GATN TC N GGAG T TC T T N AGGAGGGGGGGT A C T CTT TAC T G A T G A A T ATC GTGGAAG G TT TTTT A CACT C T ATGCG T TT AT AAC GATTTA A T C AA AAA AGAA ATG TC A T T CTAGT T C . TAA G TG C T A AA A TGTA T A G TTT A AG A ATGTACATGTAT C C A TC CAAC CA GG CC A T GG AGGT TT AC A T GTTTTTGT T TTC A T C A GA G G AAAAA T A T TACTAGTAATCA TTAAGG A ATCA TT T
blockSeqs : . G GA A G . C . T GT . . . . G GT . . . TTA TA T . C . G . G . ATT GTG . AA . . CAC . T GTAC A . . AG . . T . . . AGAA A . . . . . . C . TA T . . . . . . . . . . . . . . ATGTACATGTAT . . . . CAAT GG . TT . . CG A . CC . . G . TTC . . . . . G . GA . . T TACTTGTAATCA TTAGA . TTA . .
blockSeqs : . G GA A C . C . T N . . . . A T . . . CAT TG T . C . . . A . TC TTA . AA . . CAC . . GCA . . . TA . . T . . . AAAA G . . . . . . A . AA A . . . . . . . . . . . . . . CCCGT . . . . CAAC TA . C . . GG A . TG . . . . AGC . . . . . . . TT . . G TTACTTGTATCA T . TTA . .
blockSeqs : . . TA A G . C . T G . . . . A . . . . CAT CG T . C . . . T . AG TTG . TT . . CAC . . ATA . . . T . . T . . . AGGA . . . . . . . A . T T . . . . . . . . . . . . . . G . . . . AAC GC . C . . TG A . T . . . . AT . . . . . . . AA . . G TATTAGTAGA T . CTG . .
blockSeqs : . . . . . . . T G . . . . T . . . . CTT TA T . C . . . A . AT CAA . AA . . CAC . . ATA . . . A . . T . . . AGAA . . . . . . . A . T T . . . . . . . . . . . . . . . . . . . AT TG . C . . GT A . T . . . . TC . . . . . . . A . . T TAATAGAAT T . TCA . .
blockSeqs : . . G . . . . T . . . . TTT AG T . C . . . A . AT TTA . AA . . TAG . . ATG . . . A . . C . . . AGAA . . . . . . . C . T A . . . . . . . . . . . . . . . . . . . A TG . C . . GT A . T . . . . AT . . . . . . . A . . T TACTGGAAT T . CTG . .
blockSeqs : . . G . . . . T . . . . TTT TA T . C . . . A . AT TTG . AA . . TGA . . ATA . . . A . . C . . . GAGA . . . . . . . C . T T . . . . . . . . . . . . . . . . . . . A CA . C . . GG A . T . . . . AT . . . . . . . A . . T TAATAATCA T . CTG . .
blockSeqs : G . . . . G . . . . TT TA . . C . . . A . AT GTG . CC . . CAC . . GCA . . . A . . C . . . AGAA . . . . . . . T . . T . . . . . . . . . . . . . . . . . . . A TG . C . . AG A . T . . . . TC . . . . . . . T . . T TAAGCACT A . TTT . .
blockSeqs : . . . . . . . . . . . . . . C . . . T . T GAT . TT . . GAG . . TG . . . G . . T . . . AGA . . . . . . . C . . . . . . . . . . . . . . . . . . . . . CA . C . . CG A . T . . . . AT . . . . . . . A . . T AGAATC T . TTA . .
blockSeqs : . . . . . . . . . . . . . A . . . A . A T . AA . . . . . GG . . . A . . C . . . AGA . . . . . . . A . . . . . . . . . . . . . . . . . T . A . . TG C . C . . . . AT . . . . . . . A . . T TAAT T . AA . .
blockSeqs : . . . T . . . A . . . . TT . . . . . CA . . . A . . C . . . AGA . . . . . . . T . . . . . . . . . . . . . . . G . C . . GG A . T . . . . A . . . . . . . A . . . TAAG . . G . .
blockSeqs : . C . . . . . . TT . . . . . A . . . . . . C . . . AGA . . . . . . . C . . . . . . . . . . . . . . . . . . . A . T . . . . A . . . . . . . A . . . GAAT . .
blockSeqs : . . . . . . . . . . . . . . . . . AG . . . . . . . . . . . . . . . . . . . . A . C . . . . . . . . A . . . GA
blockSeqs : . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . C . . .
blockSeqs : . . . . . C .
blockSeqs : . . . .
blockSeqCons : G**** AGAA******* T** A*** AT* TATAGAATA****
originalCons : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGG---G-GG-GGAG--G-GG-GGNGGGGG------------TAACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAA---TATCCAGA-----AGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT-ATTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-AACATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AATCTGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATA-TACTAGTAATCAATCTTGACT-----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
finalCons : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGGG----GG-GGAG--G-GG-GGNGGGGG------------TAACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTTG----AGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--AT-A--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT--ATGAAAAA---TATCCAGAA-------AATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACA-CTT--TTTAATT--G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATTA---ATTGCGAA--ATACCTGAAATATA-CCCCT-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T--------TTGAAAAAAA-AAT-TGTTGT-AACCGTT-GACA-ATCCTTG-G--AA-A-A-A----T-AT-TCTAATATATAGAATA----ATCTTGACT-----GGAGAAAA-TTATNT-ATTAGAGTA--A-ATGAATGT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAATGAATTTCCTTGAAGGACTGCATTAAGCCAAGTTATGGAAAGAATAGAAAACTTGAACACTTTTTCCAAGCACTTATAAATTAATAATGTTTTATTCCATTATTTACGATGAGGATTATCTTATGATTTTTTTTTACAATGTGGAAGAATGAAAATATTATATCAATTGAGGCAAATTGTGTAAAGAATTTTTAGGGGGTGGGGTGGCGGTGGTTGTAA
Unaligned ( gi|14 ): TAGGATTGGTTTGTAAGTTTTGACAAAATTCAATAAATAACTGCAAATTGCCAAGTGATGGAAAGAATAGAAAATTGGGAAACATTTTCAAGCACTTCAAAATTAGTAATGTTTTATTCCGTTACGTAAGATGAGGATTATGCTATGAAATATTCTTACAATGTGGAAGAATAAAAATCATT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|23 ): ACAAAACAACTTCCCTGAATGATTGTATTAATTGCCAGGTGATGGAAAAAGTAGAAATTTGAAACACTATAAATCAATAGTTTTATTCCATTATTTAAGATGGGTATTATCTTATGATATATTTTATGGAAGAATAAATAATATTT
Alignments
lowQualScore : 1 222222 33333333333333 1111 222222222222 1111111 22222222 111 333333333333 33333 11111111 111111111 4444444444444444 111111
lowQualScore : 8 0 000000 3 2 99999999999999 1111 66 4 99999 3 0 55 3 3 4 0 333333333333 3 3 3 3 666 666 1 2 1 2 5 2 4 3 888 1111111 0 3 22 6666 2 8888 3 6 0 777777 5 33 33 2 888 777777 2 0 1 2 777 44444444 3 000 33 2 2 3 77777 3 0 4 33 99 2 4 4 4 4 55 3 7777 3 2 2 555 2 33 2 999999999999 2 3 2 33 99999 99 44 2 2 33 444 2 88 1 00000000 888 2 2 7777 444444444 3 3 3 9999999 8 2 8 2 4 6666666666666666 444444 3 4444 44 3
lowQualScore : . . ...... . . .............. .... .. . ..... . . .. . . . . ............ . . . . ... ... . . . . . . . . ... ....... . . .. .... . .... . . . ...... . .. .. . ... ...... . . . . ... ........ . ... .. . . . ..... . . . .. .. . . . . . .. . .... . . . ... . .. . ............ . . . .. ..... .. .. . . .. ... . .. . ........ ... . . .... ......... . . . ....... . . . . . ................ ...... . .... .. .
lowQualScore : 0 8 555555 5 5 22222222222222 8888 99 5 22222 6 1 00 6 6 9 2 666666666666 6 6 6 6 222 666 1 9 1 7 0 5 6 1 333 0000000 2 1 00 5555 9 2222 1 2 4 333333 7 99 99 9 222 777777 7 9 7 5 888 66666666 4 777 99 9 9 1 77777 1 7 8 99 22 3 4 4 0 0 00 6 1111 1 9 9 000 9 99 9 333333333333 9 1 9 99 99999 55 22 7 6 11 666 4 99 8 44444444 333 2 5 8888 999999999 1 1 1 1111111 0 7 0 9 3 4444444444444444 888888 1 9999 66 3
consensus : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGG---G-GG-GGAG--G-GG-GGNGGGGG------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTT----GAGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--A-TA--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT---ATGAAAAATATCCAGA-------AAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACACT--T--TTNAATT-G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-A--ATTGCGAA--ATACC-TGAAATATA-CCCC-T-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T----TTGAAAAAAAAAT-T----GTTGT-AACCGTT-GACA-ATCCTTG----G--AA-A-A-ATAT-TCTAATATA--TA---G-AAT-AATCTTGACT-----GGAG-AAAATTATNT-ATTAGAGTA--A-ATGAATGT
Reference ( family-5328 ) : NNNAACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---CCAGGCGTTTAT--AAAATGCCATGATGGG---G-GG-GGAG--G-GG-GGNGGGGG------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-TATGCCATGATGGTGA-AAAT-GAAGTTTT----GAGGAAACAAGGGAAAAGCTGC-TNNA----GGTAAAC-AAATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--A-TA--TAA------C-ATTTTATTCAAAATGAAATCGCTA-ATGAGATATT---ATGAAAAATATCCAGA-------AAATAT---TA--GAATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTACACT--T--TTTAATT-G-TGATTATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAC------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-A--ATTGCGAA--ATACC-TGAAATATA-CCCC-T-GAAAGA-GCTGGAGGAGGA---GG--TGGC-C-G-AAGGCTTTGTG-T----TTGAAAAAAAAAT-T----GTTGT-AACCGTT-GACA-ATCCTTG----G--AA-A-A-ATAT-TCTAATATA--TA---G-AAT-AATCTTGACT-----GGAG-AAAATTATNT-ATTAGAGTA--A-ATGAATGT
gi|1 : AACATG-TCTGCATATTTTTT-TA---AATTTTGTTTT--------------CCAT---ACAGACGTTTAT--AAAATGCCATGATGGG---GTGG-GGAG--G-GA-GGTGGGGG------------T-AACA-TGTC-TTCTT-AACTTTCATATTTA-ATTTTGTTTTCCA-TCCAGACGTCT-A-TCA-AATGCCAAGTTCGTGA-AAAT-GAAGTGTT----GGGGAAATAAGGGAAAAGCTGC-TAAA----GGTAAAC-ATATTATATACAC-TG-TA-ATAAAAT--A-AT-AAA--AGGTAG--A-TA--TCA------C-ATTTTATTTAAAATGAAATTGCTA-ATGAGATATT---ATGGAAAATATCCAGATTTGCAGAAATAT---TA--GAATCA-TG-ATCTACAATA-A-----CTTC-TCAAATTAAACC--TCATTTTATT-G-TGGTTATGG-C-ATTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-TAACTGAAAG-CAGC-ATAGATT--TATTTCAACATTGTGAA--ATACC-TGAAATATA-TCCC-T-GAAAGA-ACTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T----TTGAAAAAAAAATCT----GTTGT-AACCGTT-GACA-ATCCTTG----G--AA-A-G-ATAT-TTCAATATAC-TA---GCAATCAATCTTGACA-----GGAG-AAAATTATAT-GTTAGGGTA--A-ATGAATGT
gi|11 : gtaTTTAA--TTG-ATTT----TAG-AATG-TGTTCTTC-CTA---GC-A--AT-CCTAC------------GG-CAACTGAAAG-CAGC-ACAGATT--TAATT----ATTGCAAA--ATACC-TGAAATATA-CCCC-CAGAGAGA-GCT---GGAGGA---GG--TGAT-T-G-AAGGCTTTGTG-T----TTGAAAAAAAAA--T----GTTGC-GACTGTT-GACA-ATCCTTG----G--AA-A-AGACAT-TTT--TA-A--TA---G-AAT--ATTTTGACT-----AGAG-AAAAT
gi|12 : attctgc-AATG-TGTTCTTC-CTA---GC-A--GG-CCTAC------------GG-CAAATGAA-G-CAGC-ATATGTT--TAATT-A---TTGGGAA--ATACC-TTAAATATA-CCCCCT-GAAAGA-GCTGTATGAGA--------TGAT-T-G-AAGGTTTTGTG-TG---TTGAGAAAAGAAT------GTTGT-AACCGTT-GAAA-ATCCTTG----G--AAGA-A-ATAT-ATTA----G--TA---G-AAT-A---TT------------------TTATTT-ATTATAGGG--A-ATGAAT
gi|13 : AGAAGTCA-A-TGA-TATGCCATGATGGCAA-AATC-GAAGTTGT----GAAGAAACGATGGAAAAGCTGC-TTTA----GGTAAAC-AAATTACATA-------TG-AT---GC--A-AT-AAA--AGGTAG--A-TT--TAA------C-ATTT------------AATCGCTA-CTGAGATATC---ATAAAAAATATTCAG--------AAATAT---TA--GAATCA-TG-ATCTACAATA-G-----ATTC-TCAAATCACACT--T--TTa
gi|16 : AATTACACT--T--TTGAATT-A-TGATTATGA-T-TTTTTAAATTG-GTTT----TAG-AATG-TGTATTTC-CTA---GC-A--GT-CCCATCCCGT-------GG-CAAATGAAAG-CAGC-ATAGATT--TAATT-A---TTGTATA--ATACC-TTAAATATG-CCCC-T-GAAAGA-GCT---GGAGGA---GG--TTGT-T-G-AAGGCTTTGTG-T----TTGAAAAAAAA
gi|17 : TGAAATTGCTA-ATGAGATATT---ATGAAAAATGTCCAG--------AAATAT---TA--GAATCA-TG-ATCTGCAATA-A-----ATTCTTTAAA--AAACT--TAATTTTATT-G-TGATCATGA-T-TTTTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTAT------------GG-CAACTGAAAG-CAGC-ATAGATT--TAATT-
gi|18 : GC-ATATATT--TAATT-A---TTGGCAA--ATGCC-TGAAATATA-CCCC-T-GAAAGA-GCTGGATGAGG--------------------------TG-A----TTGAAAAAAAAAT------GTTGT-AACTGTT-GGCA-ATCCTTGA---A--AA-A-A-ATAT-TTTA----C--TG---G-AAT--ATCTAAACT-----AAAG-AAAATTATTT-ATTAAAGTA--A-ATTAAcaaca
gi|19 : GAA--TTACC-AGCATCATA-CACC-C-GAAAGA-GTTCGAGACGG--------TGGC-T-G-AAGGCTTTGTG-TGTTTTTG---------T-TTTCTATTGT-AACAGTT-GACA-GTCCTTG----GGAAA-A-A-ATAT-CCTAGTAT----------AAT--ATCTTGACT-----TGAG-AAAATAATA--ATTAGAGTA--A-ATGAATG
gi|2 : AGCATGGTCT-CATATTTTTT-GA---ATTTTTTTTTTCGTTTATCAAAATGCCATGATNNNNNNNNNNNN--NNNNNNNNNNNNNNNN---N-NN-NNNN--N-NN-NNNNNNNT------------T-AACAAGGTC-TTCTTTAACTTTCATATT--------GTTTTCCA-TACAGA----T-AGTCA-TATGCCATG-TGGTGA-AAAG-AAAGTTTT----AAGGAAACAAGGGAAAAGCTGC-TAAA----AGTAAAC-AAATTATATACAC-TG-TA-ATAAA-T--G-AT-AAA--AGATAG--A-TAACTAA------C-ATTTTATTTAAAAGGAAATTGCTA-ATGAGATATA---ATGAAAAATATCCAGA-------AA-TAT---TA--GGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTAAACT--T--TTAAATT-G-TGATTCTGA-T-TTGTTA--TTG-ATTT----TAG-AATG-TGTACTTC-CTA---GC-A--GT-CCTACATGTACATGTATGG-CAACTGAAAA-CAGC-ATAGATT--TAATT--------C--A--ATATTGTGAAATA-----CC-T-GAAAGA-ATTGGAGGAGGA---GG--TGGC-T-G-AAGGTTTTGTG-T----TTGAAAAAAATTC-T----GTTGT-AACCGTT-GACA-ATCCTTG----G--AAGA-A-ATAT-TCTGATA-A--T------AATCAATCTTGACT-----GGAG-AAAATTATCT-GTTAGGGTA--T-ATGAATGT
gi|20 : tgtTTCATATTTA-ATTTTGTTTTCCA-TAAAGTCGTAT-A-TCA-TATGCCATGGTGGTGA-AA-T-GAAGTTTT----GAGGAAAGAAGGGAAAAGCTGA-TAAA----GGTAAAC-AGATTATATACAC-AG-TA-ATAGAAT--A-AT-AAA--AGGTAG--A-TA--TAA------C-ATTTTATTTAtg
gi|21 : -T-TTTTTA--TTG-ATTT----TAT-AATG-TGTACTTC-TTA---GC-A--GT-CCTAT------------GA-C-ACTGAAAG-CAGC-ATAGATT--TAATTCAACATAGTGAA--ATACC-TGAAGTATA--TCC-T-GAAAGA-ACTTGAGGAGGAGGTGG--TGGC-T-G-AAGGCTTTGTG-T----TTGAAAAAAA
gi|22 : AACATA-TCTTCTTAATTTTCATAGTTAATTTTGTTTT--------------CCAT---CCAGGTGTTTTT--TAAATTTCAT--TGGG---G-GG-GGGG--G-GG-G
gi|24 : ttatatcaattgaggcagattgtgtaaagatttttattatttttatgtggtggtgtttgtG---G-GG-ATAG--G-GG-GGGGGAGG------------TTAACA-TGTA-TTCTC-AATTATCTTATTTG-ATTTTGTTTTTCA-TTCAGAC-T----------------TGATGGAGA-ACAT-GAATTTCA----AAGGACACAAGGGAAAAG-TGCGTTTG----GCTAAAC--AATTCTATcttgtcttct
gi|25 : gtgttttttctttCCC-G-GAAAGA-CTTGTA--AGGA---CG--TGGCAC-G-AAGGCTTATTT-T----TTTAGAAAATGAT-T------TGT-AATCGTTTGACACATCCTTG----G--AA-A-ATTTAT-TCTAAGATA---A---G-----CACTTTGACTTAGA-GAAG-AAAATTATATCATTA-AGTA--A-ATGAg
gi|26 : CC-T-GAAAGA-CTTGTAGGACG--------TGGC-CCG-AAGGCTTTGTG-T----TTTTATAAAATGA-T----GTTGT-AATCGTT-GACA-ATCCTTG----G--AA-A-ATTTAT-TCTAAGATA---A---G-ACT-----TTGACTTAAGGAGAG-AAAATTATTC-ATTAGAGTA--A-ATGAAc
gi|27 : TA-TGTACTTC-CTA---GC-A--GT-CGTAC------------GG-CAACTGAAAG-CAAC-AGATATC--TAATT----ATTGCAAA--ATACC-TTAAATAAA-CCCC-T-GAAAAA-GCC---GAAGGA---GG--TGGC-C-A-AAGGCTTT
gi|28 : AACAAGGGAAAAGCTGC-TAAA----GGTAAAC-AAGTTATATACAC-TG-TA-ATAAAAT--A-AT-GAA------------------------------TTATTTAAAATGAAATTGCTA-GTGAGATATT---ATGAAAAATATCCAGA-------AAaatcattgcaaaatacatgt
gi|29 : --AAAATGCCATGATGGG---GTGGTGGAG--G-GG-GGAGGGGAGT----------T-AACA-TGTC-TTCTT-AACATTCATATTCG-ATTTTATTTTCCA-TCCAGACGTCT-A-CTG-TATGCCATta
gi|3 : AGCATG-TCT-CATATTTTTT-GA---GATTTTCTTTT--------------TC-----------GTTTATTCAAAATGCCATGATGGGGGAG-GG-GGAG--G-GG-GGAGGGGAAGGAGGGGGGGTT-AACA-AGTC-TTCTT-TACATTCATA--------TTGTTTT-CA-TACAGA---CT-A--CA-TATGCCATG-TGGTAA-AGA---AAGTTTT----AAGGAAACAAGGGAAAAG-TGC-TAAA----AGTAAACAAAATTATATACAC-TG-TA-AT-AAAT--G-AT-AAA--AGATAG--A--A--TAA------CAAACATATTTTAAAAGGAATTGCTACAT-AGATATA---ATGAAAAATATCCAG---------AATCT---TA--GGATCA-TG-ATCTACAATA-A-----ATTC-TCAAATTA-AC------TTAAATT-GCTGATTCTGA-T-TTGTTA--TTG-A-TT----TAG-AATG-TGTACTTCGCTA---GC----GTACCTACATGTACATGTATGGCCAACTGAAAA-CAGC-ATAGATT--TAATT-AT-ATTGTGAA--ATACC-TGAAA-------------AAA----TTGGA-GAGGA---GGTTTGGC-T-GAAAGGTTTTGTG-T----TTTGAAAAAATTC-T----GTTGT-AAC--TT-GACA-ATCCTTG----G--AAGA-A-ATAT-TCTGATA-----A---G-AAT-CATCTTA--T-----GGAG-AAAATTATCT-GTTAGGGTATTATATGAATGT
gi|30 : tgtA--TAA------C-ATTTTATTTAAAATGAAATTGCTC-ATGAGATACT---ATGAAAAATAT-CAAA-------AAATACATGTATCAAATCG-TG-ATCTACAATA-A-----ATTC-TCAAATTAAACT--tgtg
gi|31 : GGA---GG--TGGC-T-G-AAGGCTTTGTG-T----TTGAATAAAAGTC-T----GTTGT-AACCGTT-GACA-ATTCTTGAAAAA--AA-A-A-ATAC-TCTAATATAC-TA---GTAATCAATCTTGAC
gi|32 : CGTTTAT--AAAATGCCATGATGGG---G-GT--------------TGGGGG------------T-AACA-TGTC-TTCTT-AACTTTTATATCTA-ATTTTGTTTTCCA-TCCAGACATCT-A-TCA-TATGCCATGag
gi|33 : aT--G-AT-AAA--AGGTAG--A-TA--CTA------C-ATT------------AAATTGCTA-ATGAGG-AGT---CTGAAAA--ACCCAG--------AAATAC-------G---TA-TG-ATCCACATTA-T-----ATGC-TCAAATAACACT--tt
gi|34 : atatactgTACC-TGAAATATA-CCGC-T-GAAAGA-GCTAGAGGAGGC---GA--T----C-A-AAGGCTTTGTG-T----TTGAAAAAAAAAT-T----GCTGT-AACCGTT-GACA-ATCCCTG----G--AA-AGA-ATA
gi|35 : TATATATAG-TG-CA-ATAAAG---G-GT-AAATTA---AG--A-TG--TAA------A-ATTTTATTCAAAATAAAATCACTA-ACGACA---T---ATGAAAAATATCCACA-------AA
gi|36 : taCAAAATGAG--CGCTA-ATGAGCTATT---ATGAAAACTATCCAGG-------AA---T---TA--GAATTA-TG-ATCTACAATG-A-----ATTC-ACAAAGTACACT--T--TT
gi|37 : CA-TTTAGACGTCT-A-TCA-TATGCCATATTGGTGA-AAAT-GAAGTTTT----GGGGGAACAAGGGAAAAGCTGC-TAAA----GGTAAAC-Aaa
gi|38 : -A-A-ATAT-TCTAATATACTTG---T-AATCAATCTTGGCA-----GGAG-AAAATTGCCT-GTTAGGGTA--A-ATGAATGT
gi|39 : ----TAG-AACG-TGTACTTC-CCA---TC-AAGGT-CCTACG-----------GG-CAAC-AAAAGCCAGCAATAGAAT--TAtgtgga
gi|4 : GGG---G-GT-GTAT--G-TGTGGTGGTAG------------T-AGCA-CTTC-TTCTT-AA-------------------TTTTCCA-TCCAGGCGT-T-A-TAA-CATGACATGAAGGGGA-ccagcaatcat
gi|4 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttaGCACTTCTTCT-TA---A------TTTT--------------CCAT---CCAGGCGTT-AT--AACATGACATGA--------------AG--G-GG-AG----GG------------T-AGAA-TGTCCTTCTT-AATTTTCATGTTAG-ATTTTGT---CCA-ACCAGACGTCTTA-TCAATATGCTATGATGGTGATAAAT--AAGTTGT----GATTGAACAAAGGAAAAGCTGC-CCCATTTTAGTAAAC-AAATTATATA-----A-TA-AAAAGGT--ACATTAAG--AGATAC----TAG-TAA------C-ATTTAATGCAAAATAAAATCGCTA-ACGGGATATT---ATGAAAGAAATCCAGA-------AA-TAT---TA--GAATCA-TG-ATGTACAATA-A-----ATTC-TGAAAGTATACT--T--TTTAATT-G-TGATTATGA-T-TTTTTA--TTG-ACTT----TAT-AATG-TGTTCTTC-CTA---TC-A--GT-ACTAT------------GG-gggtagaatgtccttcttaattttcatgttagattttgtccaaccagacgtcttatcaatatgctatgatggtgataaataagttgtgattgaacaaaggaaaagctgccccattttagtaaacaaattatataataaaaaggtacattaagagatactagtaacatttaatgcaaaataaaatcgctaacgggatattatgaaagaaatccagaaatattagaatcatgatgtacaataaattctgaaagtatactttttaattgtgattatgattttttattgactttataatgtgttcttcctatcagtactatgg
gi|40 : caaatacaactccctgaatgattgtataatttgccagtgatggaaaaatagaaatttgaaacacttaaatcatagttattccattattaagatgggtattatcttatgactatattttatggaagaataaataatattttatatcaattgaggccagattattaaacaagaattttagggggtgtatgtgtggtggtagta-TGCAAAATA-CCCC---GAAAGA-GCTCGAGG---A---GG--TGGC-A-G-AAGGCTTTGTG-T----TTGAAAA
gi|41 : aggtatG------------T-AACA-TATC-GTCTT-AATT------TTTA-A------TTTCCA-CTCAGACGTCT-A-TCA-TATGCCATGATGGTttt
gi|42 : tgtttG----A--AA-G-A-ATAT-TTTAATA---------G-AAT-A-TCTTGACT-----GAAG-AAAATAATTT-TTTAGAGTA--A-ATGAAT
gi|5 : ---G-GG-GGAGTCGTGG-AGTAGTTA------------T-AACA-TGTC-TTCCT-AA---------TTACATTTTGTTTTCCAGTCCAGAAAGCA-AGTGA-TATGCCAT-ATG--CA-AAATCGAAATTGTGGAAGAAAAAACGATGGAAAAACTGC-TTTA----GGTAAAC-AAA-TACATATGA-TG-C--------C--A-AT-AAA--AGGTAG--ATTA--TAA------C-ATTT------------AATCGCTA-CTGAGATATCAAAAAAAAAAATATTCAG--------AAATAT---TA---AATCA-TG-ATCTACAATA-G-----ATTC-TCAAATC-CAC---T--TTAAATA-G-TGATTATAA-TATTTGTA--TTGAATTTTGTATAGTAGTGATGTACTTG-CGATTTGC-A--GT-CGTAC-------------G-CAACTGAAAG-CAAC-AGATATTTCTAATT----ATTGCAAAGGATACC-T--AATA-A-ACCC-T-GAAAAA-GCC---GAAGGA---GT--TGGC-C-A-AAGGCTTa
gi|6 : cataacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggaaaatttgatgcattactgtgtaaagaaattgtttac-TCA-TATGCCATCTTGGTGA-AAATTGAAGTTT------GGGGAACAAGGAAAA--TTGA-TAAA----GGTAAAA-AAATT-TATACAC-TGCTA-ATAAAAT--A-ATAAAA--AGATAG--A-TA---GA------C-ATTTTATTTAAAATGAAATTGCTA-ATGAGATATTAA-ATGAAAAATATCGAG--------AAATATA--TA--TAACCA-TGTATCTACAATC-A-----ATTT-CCAAACTAAACTAAT--TTTATTTGG-TGGATATGATT-TTTTTA--TTG-ATT------------------------TA---GCAA--GT-CCTAT------------GG-CAACTGAAAA-CAGC-ATAGA-T--TAATT-AACATTGT-AA--ATACC-TGAAAGATATTCCC-T-GAAAGA-ACTTGA----GA---GG--TGGC-TGG-AAGTCTTTGTGAT----TTAAAAAAAAAGC-T----GTTGTAAACCGTT-GAC--ATCCTTG----G--AA-A-A-AAATATCTAATAT---TACTTG-TATCAATCTTGAA------GGAG---AATTATG----TAGGGTA--A-ATG-ATGTaagttcatgcaaaataacatgta
gi|7 : AAAC-AAATTATACA----TG-TATATAGTGC--A-AT-AAA---GGTAG--A-T---TAAGATTTAC-ATTTTATTCAAAATAAAATCACTA-ATGAGATATC---ATGAACAATATCCAGA-------AATTAT---TG--GA-TCAATG-ATCTACGATA-A-----CTTC-TCAACGTATACT--T--TTTAATT-G-------TGA-A-TTATGA--TT---TTT----TAT-TAT--TG-ATTT-----------------------------------------TGAAAG-CAGC-ATATATT--TAATT-A---TTG-GGA--ATACC-TGAA-TAAA-CCC----GAAAGATGCTGGAGGAGG--------TGAT-C-G-AAG-CTATGTG-T----TTGAAAATCAAAT------GT-GT-AACCGTT-GACA-ACCCTTG----GA-AA-A-A-ATAT-TTTA----A--TA---G-----AATTTTGACT-----AGAGAAAAATTATTT-ATTAGAGTA--A-ATGAATt
gi|8 : AACATG-TCTG---ATTGTCT------GATTTTGTTTT--------------CCAT---CCAGGTGTTTAT--AAAATGCCATGA----------G-GGAG--G-AG-GGGGGGGG----------------CA-TGTC-TTCTG-AATTTTCACATTTA-ATTTTCTTTTCCA-CCTAGATGTCT-A-TCA-TATACCATGATGGTGA-AA-----------------GAAAACAAAGGAAAAGTTGC-TTTT----GGTAAAC-AAATTATATAGAG-TG-CA-ATAAAA------------------G--A-T---TAA------C-ATTTTATTCAAAATAAAATCACTA-ACGTGATATC---ATGAAAAATATCCAG--------AAATAC---TA--GAATCA-TG-ATCTACAa
gi|9 : tggttgtTTTGTTTTTCA-TCCAGACGTCT-A-TCA-TTTGCCATGATAGTGA-AAAT-GAAATTGA----TAGGAAACAAGGGAAAGGCTGC-TTTA----GGT-------ATTAAAGCCACTTG-TATATATAATGCG-AT-TGA--AGGTAGATA-TA--TAA------C-A---TATTCAAAATAAAATCGCTG-ATGAGATATT---ATGAAAAATATCCAG--------AAATGCG--TA--GAATCA-TT-ATATACTATATACTAGTATTC-TCAAATTACACT--T--TT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAATGAATTTCCTTGAAGGACTGCATTAAGCCAAGTTATGGAAAGAATAGAAAACTTGAACACTTTTTCCAAGCACTTATAAATTAATAATGTTTTATTCCATTATTTACGATGAGGATTATCTTATGATTTTTTTTTACAATGTGGAAGAATGAAAATATTATATCAATTGAGGCAAATTGTGTAAAGAATTTTTAGGGGGTGGGGTGGCGGTGGTTGTAA
Unaligned ( gi|14 ): TAGGATTGGTTTGTAAGTTTTGACAAAATTCAATAAATAACTGCAAATTGCCAAGTGATGGAAAGAATAGAAAATTGGGAAACATTTTCAAGCACTTCAAAATTAGTAATGTTTTATTCCGTTACGTAAGATGAGGATTATGCTATGAAATATTCTTACAATGTGGAAGAATAAAAATCATT
Unaligned ( gi|15 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|23 ): ACAAAACAACTTCCCTGAATGATTGTATTAATTGCCAGGTGATGGAAAAAGTAGAAATTTGAAACACTATAAATCAATAGTTTTATTCCATTATTTAAGATGGGTATTATCTTATGATATATTTTATGGAAGAATAAATAATATTT