lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 1111 3333333333 11111 1111 22222 1 2222 1 777777777777 2 1 222222222222222222 2 33333333333333333333333333333333333 33333333 1111 333 33333333333333333333 1 1 111 4444444444444444444444 2222 55555555555555 222 333 55 3 111111111111111111111111111111111111111111111111111111111111111111111 333333333 11 22222222 66666666666666666666666 1 2 66666666666666666666666 33 11 1 333333333 3333333333 1 2 1 666666666 22 1 33 1 3 1 33 11 1 22222 11 2 3333 111 1 1 2 3 1 1 1111 66666666666666666666666666666666666666 111 11 33 1 22 11 11 11 11 33 3333 33333333333333333333333333333333333 555555555 444 44 44444444444 1 4444 1 2222 1 1 44444444444444444444444444444 11 22 11 5555555 11 444444444444 11 1 2 1 3 111 1 1 222 4 1 1 3333 11 2 1 1 111 1 33 1 2 1 1 1111 1 111 1 1 1
lowQualScore : 99 99 8 1 0000 0000000000 22222 0 4444 55555 1 2 8888 5 3 444444444444 4 5 2 7 7 9 6 777777777777777777 6 6 6 2 66666666666666666666666666666666666 1 4 8888 4 9 4 11111111 77 4 66 2222 3 77 444 5 99999999999999999999 0 0 555 7777777777777777777777 5555 55555555555555 444 6 6 111 6 55 6 0 555555555555555555555555555555555555555555555555555555555555555555555 3 8 8 555555555 1 11 6 8 1 55555555 8 8 88888888888888888888888 2 6 6 3 5 8 8 1 88888888888888888888888 3 3 11 33 0 55 666666666 2 6666666666 0 0 3 555555555 00 6 0 0 11 2 0 0 3 0 44 8 2 33 0 22222 33 0 1111 2 555 5 3 0 7 7 2 0 0 0 5555 3 99999999999999999999999999999999999999 99 6 666 6 66 88 7 44 3 77 2 33 22 33 55 11 5555 99999999999999999999999999999999999 888888888 666 55 22222222222 3 1111 3 1111 3 3 22222222222222222222222222222 88 00 88 2222222 33 333333333333 88 7 6 3 7 7 1 666 3 3 444 0 0 3 3 4 0 0 2 0000 33 3 6 2 3 3 0 0 666 0 2 77 666 5 0 0 0 5555 0 999 0 3 3
lowQualScore : .. .. . . .... .......... ..... . .... ..... . . .... . . ............ . . . . . . . .................. . . . . ................................... . . .... . . . ........ .. . .. .... . .. ... . .................... . . ... ...................... .... .............. ... . . ... . .. . . ..................................................................... . . . ......... . .. . . . ........ . . ....................... . . . . . . . . ....................... . . .. .. . .. ......... . .......... . . . ......... .. . . . .. . . . . . .. . . .. . ..... .. . .... . ... . . . . . . . . . .... . ...................................... .. . ... . .. .. . .. . .. . .. .. .. .. .. .... ................................... ......... ... .. ........... . .... . .... . . ............................. .. .. .. ....... .. ............ .. . . . . . . ... . . ... . . . . . . . . .... .. . . . . . . . ... . . .. ... . . . . .... . ... . . .
lowQualScore : 22 22 0 0 0000 3333333333 33333 4 0000 00000 4 7 6666 7 4 111111111111 3 7 5 7 3 5 7 777777777777777777 7 7 7 9 44444444444444444444444444444444444 7 4 8888 4 8 4 33333333 33 4 11 1111 0 99 666 7 11111111111111111111 0 0 000 5555555555555555555555 0000 00000000000000 777 3 7 333 7 00 7 0 888888888888888888888888888888888888888888888888888888888888888888888 8 0 0 666666666 4 00 8 0 4 00000000 0 0 11111111111111111111111 5 7 7 3 6 0 0 6 88888888888888888888888 2 2 00 88 0 88 888888888 5 2222222222 0 0 3 333333333 77 7 0 2 22 5 0 0 2 0 55 8 5 22 0 22222 22 0 2222 5 888 5 2 0 0 5 5 0 0 0 0000 2 33333333333333333333333333333333333333 22 3 222 7 55 88 3 00 3 33 5 88 55 88 22 00 0000 99999999999999999999999999999999999 333333333 000 00 33333333333 3 0000 3 0000 3 3 00000000000000000000000000000 33 77 33 0000000 33 777777777777 33 0 7 3 3 3 7 777 3 3 333 7 0 3 3 0 8 2 5 2222 88 2 0 0 2 2 0 8 222 0 5 00 888 5 0 0 0 0000 0 222 0 3 3
consensus : AGATGCATTGAG--CTCCAAC--TCANGCACCTT-G-GTGCTAA-A----GACAATAA-A---GGAAAA--T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTG-G--NTAT----ACTGGCCA-CGGCTNCT-ATAAACAATA-GAG-GG---AG------C-CG-AGCGTCA-AT-TAC-TGCCTATTT---G-G-C-AT--------C-CC-TCGACAATA-CAAGAGGAACT-GGTGA-AC-CCT-GGGCA-CAG-ATTGC--CAC-CA-G--TTT----GATCA--CCT-AGTACTGGACAATTC-A--TC---A--TT-T-AAA--TA-C-AGAGTCAAATAG-NA-A-----AA-----CNA-ACTGCTGAA----CACTA--------------CTGGTAAGT-CTAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCTGC-ATAGTCTGCGGC-CACCAA----GAGTAGGATAA-C--ATTAC-C--AAA--ACAAACGCTAACA-T-GA--GGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATAT-G-ACTGA-----NA----TTT------G--ACC-C-CCA-CCCACTTGAA-T-GTCAGTATCATTG--A--CC-AAT-ACTGTGGT-C-AAAAATTAGACCTCAACAAT-AGAA--CA-GTANTAGG--CGAA-T-CGAGTAGACAATAAG-G----TGTCATAG-ACTTTC-AAT-AT-TA---TCTATG-AAATGCGA-ATAGAGAA--ATAAACTA-TGACTAAGTGAA-CAATC-AGTCAGTCAT-AG-CG-CAG-CCA-TGGCCCG-TTT----ANCAGT-TTTAGAG-ACGCCT-GGACAGAATTATCTA-TC-AAGAA-G--CTCGCAATGCTTGTTGCAATC--TAAATATA-AA-AAACA-AGTN-A--T-------TGCCC--ATGTCGGAAA-AG-TGGACCT-TTAAGGCTAAAGACATTT-TGTGTTAGTCTG--AT-GCAA--CTCGGGAT-ACCTAAT-G-TACCCCCC-----CCCCC----------G------CA------AACAAGT-AGC-CGC-ATGCCTGT-TGACTCA-AATTCTAATTCTT-T--CCAT-GGCGGCTTGATTG-ATTCCCCC--T-CCAT-GCAGACGTGG-AC-AAAT-TTGA-GTCC-A------------------T--------AC--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-T--AGCCC--TATGTTTACTGTTACTGGAAT-GTTGTTAGCTCC-ACGATT-G-ATA-ACGA-GCATATGTGGTGTAT-CTTTTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGATTTTCTGGCATGGCA-AG-ATGCGT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
Reference ( gi|1 ) : AGATGCATTGAG--CTCCAAC--TCAAGCACCTT-G-GTGCTAA-A----TACAATAA-A---AGAAAA--T-AGCAA--G--TACT-CGT-GAATGA-TTTTGATTG-C--GTA-----ACTGGCCA-CGGCTGCTTATAAACAATAAGAG-GG---AG------C-CG-AGCATCA-AT-TAC-TGCC-ATTT---G-G-C-AT--------C-C--TCGACTATAACAAGAGGAACT-GGTGA-AC-CCT-GTGCA-CAG-ATTGT--CAC-CA-G--TTT----GATCA--CC--AGTACTGGACAATTC-A--TC---A--TTAT-AA---TA-C-AGAGTCAAATAG-CA-A-----AA-----CCA-ACTGCTGAA----CACTA--------------CTGGTAAGT-CCAAAATAGCTGCC-A-CTGAG-ACTAATTGCC-TCTGCGATAGTCTGCGGC-CACCCA----GAATAGGCTAA-C--ATTA--C--AAA--ACAAACGCTAACA-T-GA--G---CAAATT-AAA-AA-TAA-----CGCCAAGTT--CCTC-GAGCCAA------AATGT-G-ACTGA-----TA----TTT------G--ACC-C-CCA-CCCACTTGAA-T-GTCTGTATCATTG--A--CCGAAT-ACT-TGGT-C-AAAAATTAGACCTCAACAATAAGAA--CA-GTACTAGG--TG-A-T-CGAGTAGACAATTAA-G----TGTCATAG-AC-TTC-AAT-AT-TAGGATCTATG-AAATGCAA-ATAGAGAAC-ATAAACTA-TGA-TAAGTGAA-CAATCAAGTCAGTCAT-AG-CG-CAG-CCA-TGGCCCG-TTT----ACCAGT-TTTAGAG-ACACCTGGGACAGAATTAT-TA-TC-AAGAA-G--CTCGCAATGCTTGTTGCAATC-GTAAAT-TA-AA-AAACATAGTA-A--T-------T-CCC--ATGCCGGAAA-AGTTGGACCT-TTAAGGC-AAAGACATTT-TGT-TTAGTCTG--AT-GCAA--CTCCGGATAACCTAAT-GTTACCCCCC-----CC-------------A------CA------AACAAGTGAGCACGCAATGCCTTTGTGACTC--AATTCTAATTC-T-T--CCATGGGCGGCTTGATTG-ATTCCCCC--T-CCAT-GCAGACGTGG-AC-AAAT-TTGA-GTCC-A------------------T--------AC--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGTGTTGAC--T--AGCCC--TATGTTTACAGTTACT-GAAT-GTTGTTAGCTCCAACGATT-G-ATA-ACGA-GCATATGTGGTGTAT-CTTCTAAC-ATG-TCTTAACCTGGAAT-AATCCCTTTCAGCCTCACTGC-CC--CCTTTGCCCTACCAAAAATCTGGATGCATTG-TGTCAATC--GAG-CTCTAATGTTGGCATCAAATTAAGA-TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|7 : AGATGCATTGAGGGCTCGCAC--TCAAGCACCTT-GTGGGCTGA-GAGAGTACATTAA-A---GAAAAA--T-AG-AA--G--TACT-CGT-GA--GA-TTTTGATTGGCTAGTA-----TTTAGCCATCGGCTGC--ATAGACAATA-GAGCGG---AG------C-C----CCTCA-AT-TAC-TGCCTATTG---G-G-C-AT--------C-CC-TCGACAATA-CAAGAGGAACT-GGTG--AC-CCT-GGGCAGCAG-AATGC--GAC-CACG--TTT----GAAAT--CC--TGTACTGGACAATTC-AT-TC---A--TT-T-AAAG-TA-C-AGAGTCAAATAG-AAGA-----GA-----CAA-ACTGCTGAAG---CACTAG-------------CT-GTAAG--CCAAAATAGCTGCC-A-C-GAG-ACTA--TG-C-TCTGGCATAGTCTG-GGCGCACCAA----G--TAGG-GAA-CA-ATTACCC--AAAGGGCAAA-GGTAACA-TGGA--GGGCCAAATT-AAA-AA-TAA-----CG
gi|9 : tataaAGATGTATTGAA--TTCCAAC--TCATGCACCTT-G-GTGCTAA-A----GACAATAA-AGAAAGAAAA--A-AGCAAA-G--TACT-CTTCAAATGA-TTTTAATTG-G--CTAT----ACTGGCCA-CGGCTGCT-ATAAACAATACGAG-GG---AG------TGTG-A-CATCA-AT-TAC-TGCCTATTT---G-GGC-AT--------CAC--TTGACAATA-TAGGAGGAACT-GGTGA-AT-CCT-GGGCA-CAG-ATTCT--CAC-CA-G--TTT----GACCA--CCT-AGTACTGGACAATTCAA--TC---A--TT-T-AA---
gi|10 : ttataaaaaAGATGCATTGAG--TTCCAGC--TTATACAC-------TGCCAA-T----GAAAATAA-C---GAAAAA--TTAGCAAA-G--TACT-CAC-CAATGA-TTTTAATTG-G--CTAT----ACTGGCCA-TGGCTTCT-ATAAACAATAAGAG-GG---GG------C-CG-AGCATCA-AT-TAC-TG-C-ATTTTTGG-A-C-AT--------T-C--TTGACAAT-ACAAGAAGAACT-GGTGA-AA-CCT-CGGCA-CAG-A-TGCA-CAC-CA-G--TTT----GATTA--CCT-AGTACTGAACAATTC-A--Ta
gi|15 : ttataaaAGATGCATTGAG--CTCCAAC--TCAAGCACCTT-G-GTGCTAA-A----TAC-ATAA-A---GAAAAA--T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTG-A--CTAT----ACTGGCCA-CGGtta
gi|8 : tataaaaCATTGAG--CTCCAGCCTTTATACACTTT-G--TGCTAATA----GAAAATAACG---ACAAAA--T--TCAATCG--TACT-CAC-CGATGACTTTTAATCGGC--ATAGTTATACTGGCCA-CAGCTGCTTA--AACAATAAGAG-AG----G------C-CGAAGCATCACAT-TAC-TGCA-GTTT---T-G-G-ATTTTTATTGC-T--TGGACAAT-GCAAGGAGAACTAGGTGA-GC-CCTCGGGCA-CAG-A-TGCCACAC-CA-G--TTTGTGAGATCGTTCC---TTACTGAAAAATTA-A--T-------TTAT-
gi|5 : tattaaaga--CTCCAAC--TTACGCACCTTTG-GT----------------TTA-A---AGAAAAACT-AGCAA--GAGTACTTCATTG--TGA-CTTT-ATTG-G--G-AGAGT-ACTG-CCA-CGGCTTCT-ATAA-CAATA---G-GG---AGTATAACC-TG-AATGTCA-ATGTACATGCCTATTT---A-T-CCAT--------C-CC-TCAATTATAA----GGGAACT-GGTAA---------TACA-TGG-TTTA---CAT--G-G--TTT----GAT-A--CCT-AGTACTGGACAATTC-A--TTGAAA--TTTT-AAATCTAGC-AAAGTAAGAAAG-GA-ACCTACAA-----CTT-AATACTAAAAAATTACTA--------------CTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCC-TCTGC-ATAGTAT--TGC-CAAC------AAAT--GATAA-C--GATAC-C--AAA--ATAAACAC---CATT-GAAGA---CGAATC-AAATAA-CGAGAC--CGCCTAGTT--CCCCTGTATTCT------AATAT-G-ACTGG-----AAAGAGTTT------G--G-C-C-CCA-CCAGCGTTAG-TGGTCAGTATC
gi|6 : gcA-A---AGAAAAC-T-AGCAA--GAGTACTTCATTG--TGA-CTTT-ATTG-G--AGAT----ACTG-CCA-CGGCTTCT-ATAA-CAATA-GTG-GGTATAA------C-CG-AATGTCA-AT-TAC-TGCCTATTT---ATC-C-AT--------C-CCGTCAATTA----AAGCGGAACT-GGTAA-AC-ACT-G------------GT--TACATA-G--TTT----GATCA--CCT-AGTACTGG-CAATTC-AGTTG---A--TTTTAAA---TA-CTAGA--CAAATAGATA-A-----AAAGAACCCATACAACTTAA----TACTAAAAAAAATTACTAGCTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCCGTCTGC-ATAGTAT--TGC-CAACAAATGTGAA-ACGATAA-CCAATAA--C--TAA--ACAACCATTGA------A--GA--CGAATTCAAA-AA-TAACGAACCGCCTAGTTTCCCCT-GTATTCT------AATAT-G-ACTGG-----AAAGAGTTT------A--GGC-C-CCA-CCtat
gi|2 : tccaaccttgacgcacctttggcttct-ATTG---G-G-C-AT--------C-CC-TCGAC-ATA-CAAGA--AAT---GTGA-AC-CCT-GGGCA-CAG-ATC-T--CAC--A-GAATTT----GATCA--CCTTGATACTTGACAATTC-A--TT---AATTTA--AA---TA-C-AA---CAAATA--CA-A-----AA-----CAA-ACTGCTGAA----CACTA--------------CTGGTAACT-C-AAAATAG-TGCC-A-C-GAG-ACTA---GCC-TTTGCTATATTCTGCG-C-CAC-------AAGTAGGATAAAC--CTTA--C--CAA---CAAA---TAGCACT-GA--GGG-CAA-TT-AAA-AA---A-----CGCCAA-TT--CC-C-GAGCCAA------ATTAT-G-A--AA-----TT----TTTGG----G--ACC-CACAA-CCCAC-TGAA-T-GTCAGTATCATTG--A--ACCAAT-ACTGTGGTAT-AAAAA-TAGACCTCAACAAT-AGAA--CA-ATAC-AGG---A-A-TCCGATTA-ACAA-TAA-GGTTATTTCATAGAAC-TTCAAAT-AG-TA----CAATG--AAT-CGA-CTAGAGAA--ATAAA-TA-TAC-TAAG-GAA-CAAC--AGTTAGTCA--AGTCG-CAC-CCACTGGCCCGATTT----AACAG--TTTAGAGTACACCT-GGACAGAATTATCTA-TC-AAAGA-A--CTCGCAATGCTTGTTGCAATCTCTAAATATA-AATAAAC--AATA-A--T-------T-TCC--ATG-CGAAAA-AG-TGGACCTGGTAAGGCTAAAGACATTT-TGTGTTAGT-TGGCAT--CAA--CT-CGGAT-ACCTAAT-G-TACCCCCC-----CCCCCCCCCCCCCCAG------CA------AACAAGT-AGC-CGC-ATGCCTGT-TGACTCA-AATTCTAATTCTT-T--CCAT-GGCGGCTTGATTGAATTCCCCC--TACCAT-GCAGACGTGT-GCAAAAT-TTGA-GTCC-A------------------T--------AC--CAGTG--TGCTA--ATT------------T-CCTTAAATTTGAAGCGCAAGTCGC-TAGACT-T--AGCCC--TATTGTTACTGTTACT-GGAA-G-TGTTAGCTCC--CGATTGG-ATA-ACGA-GCATATATAGTGCAT-CTTCTAACAATG-TCTTAACCTGGAAT-AAATCCCTTCAGCCTCAC-GC-CC--CC-TTGCCCTGCC-AAAATCTGGATGCATTG-TGTCAATC---AG-CT-TAA--TTGGCATCAAATT-AGA-TTTCTAGCATGGCA-AG-ATGCGCAACTTAAGTTATG-AATG-ATGGACG-GTTG-AT
gi|9 : tAACT-GGTGAGAA-TCT-GTGCC-CAGGATT----CAC-CA-G--TT
gi|10 : ttataaaaaagatgtattgaattccaactcatgcaccttggtgctaaagacaataaagaaagaaaaaagcaaagtactcttcaaatgattttaattggctatactggccacggctgctataaacaatacgagggagtgtgacatcaattactgcctatttgggcatcacttgacaatataggaggAACT-GGTGT-GCATCT-GTGCC-GAG-GTT-T--CAC-CA-G--TTtgaccacctagtactggacaattcaatcatttaaa
gi|17 : ttataaaagatgcattgagttccagcttatacactgccaatgaaaataacgaaaaattagcaaagtactcaccaatgattttaattggctatactggccatggcttctataaacaataagagggggccgagcatcaattactgcatttttggacattcttgacaatacaagaagA-AATGCTGAA----CACTT--------------CTGGTAA-T-CTAAGAT--CTGCCTACCCGAACACTA---GCC-TTTGCtgattacctagtactgaacaattcattta
gi|3 : aatTAAGTGCCAAAATAGCTGCC-A-C-GAG-ACTA--TGCC-TCTGC-ATAGTCTGCG-C-CACC-------AGTAGGGTAA-C--ATTA--CCAAAA--ACAAA-GCTAACA-A-GA--GGC-CAAGTT-AAA-AAATAA-----CGCCAAGTT--CCTC-GAGCCAAGAGCCAAATGTTG-ACTGA------A----TTTTTTTTGG--ACC-C-CCAACCCACTTGAA-T-GTCAGTATCATTG--AAACC-AAT-ACT-TGGT-C-AAAAATTAGACCTCA-CAATA-GAA--CA-GTAATAGG--TG-AAT-CGAGTAGACAA--AAGG----TGTCATAG-ACTTTC-AAT-ATATAG--TCTATGAAAATGCAA-ATACAGACA-ATAAACTA-TGACTAAGTGAA-CAATC-AGTCAGTCAT-AG-CG-CAG-CCA-TGGCCCGTTTT----ACCAGT-TTT--AG-ACACCT-GGACAGAATTATCTA-TCAAAGAA-G--CTCGCAATGCTTGTTGCAATC--TAA---TA-AA-AAACCAAGTA-A--TTAAATTCT-CTC--ATGCCGGAAA-AG-TGGACC--TTATGGCTAAAGACATTT-TGTGTTAGTCTG--AT-GCAA--CTCAGGAT-ACCTAAT-G-TACCCCCC-----CCCCCA---------G------CA------AACAAGT-AGC-CGC-ATGCCTGT-TGACTCA-AATTCTAATTCTT-T--CCAT-GGCGGCTTGATTG-ATTCCCCC--TCCCAT-GCAGACGTGGAAA-AAAT-TTGA-GTCC-ATATCGGGGTTGTTGACGGT--------AC--CAGTG-TTGCTA--ATTG---CCTAACCCTGCCTTGAATTTGAAGCGCAAGTCGT-TTGACCTT--AGTCC--TATGTTTACTGTTACTGGAAT-GTTG-TAGCTCC-ACGATT-G-ATA-ACGA-GCATATGTGGTGTATATTTTTAACAATG-TCTTAACCTGGAATAAATCCCTTTTAGCCTCAC-G--TC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGATTTTCTGGCATGGCA-AG-ATGCAT-ACTTAA-TTATG-AATGAATGGACGCGTAG-ATGTATtaatt
gi|4 : aaaattgtagctatCAAGTT--CCTC-GAGCCAA------AATGT-GTACTGAAAATTTT----TTT------GGAACCGC-CCA-CCCACTTGAAGT-GTCAGTATCATTGAAA--CC-AATAACTGTGGT-CGAAAAATTAGACCTCAACAAT-AGAACCCACGTAATAGGGTTGAA-T-CGCGTAGACAATAAG-G----TGTCATAG-ACTTTC-AATGAT-T---GTCTATG-AAATGCAATATAGGAGACAATAAACTC-TGACTAAGTGAAGCAATC-AGTCA-TCATGAG-CG--AGCCCA-TGGCCCT-TTTA---AACAGTATTTAG-G-AC-CCT-GGACAGAAATATCTA-TC-AAGAA-GGCTTCGCAA-GCTTGTTGCAATC--TAAATATA-GA-AACCAAGGTATATTT-------T-CCCCGATGCTGG-AA-AGT--GACCT-TT-AGGC--AAGACATTTGTG--TTAGTCTG--ATGGCAAATCTCAGGATA--CTAATCGT--CCCCCCTGACACC-------------AGTGTCTCACGCAGCAACAAGT--ACA-GCAATGCCTGT-TGACTCTAAATTCTAATTC-TGTTACCAT-GGCGGCTTGATTG-ATTCCCCCCTC-CCATGGCAGACGTGG-AC-AAATATTGACGTCCTA------------------TCGTTTGTGACGACAGTGTTTGCTGACATTGTCCT--AACCCTG-CTTGAATTTGAAGCGCAAGTCGC-TTGAC--TTAGGCGCGTTATGTTTACTGTTAGTGGAATGGTTGTTAGCTCACACGATT-GAATAGACGAGGCATATGTGGTGTA---TTTTAACAATGTTCTTACACTGGAAT-AAATCCGTTAGGCCTCAC-GCTCC--CCTTTGCCCTGCCTAAAATCTGGATGCA-TG-TGTC-ATC--GAGACTCTAA-GTTGGCA--ATATTAAGATTTTCTAGCATGGCATAGCATGCAT-ACTTAA-TTATGATATG-ATGGACG-GGTGAATGTA
gi|16 : ----TTG------G--ACC-C-CCAACCCACTTGAA-T-GTC---------------------------------AAAAATTAGACCTCAAGAAT-AGCA--CA-GTACTAGG--CGAA-T-CGAGTAGACAATAAG-G----TGTCATAG-AC-
gi|11 : ttA-ATAAAAAA---TAAACTAATGACTAAATGAA-CTATTTTCTCACT-AT-GG-CAACA--CC--TTGTCCG-TTTTTGCCCCA-T-CTT-GAG-ACGTATGA-ACATAATAAT-CACTC-AAAAATG--CTTGCAATGCTTGTTGCAA-C-TTATAT----AC-AAGCA-AGTT-A--T-------TGTAC--ATGTC-AAAA-AGT
gi|12 : taaatt--CTTGCAATTCTTGTTGCAATC----AAT-AT-AT-AAGCG-AGTT-A--T-------TGCCC--CTGTC--AAATAGGTGGACCT-Tgcatct
gi|13 : gataAATGCTTGTTGCA------AAATGTACAA-AAATA-AGTT-G--T-------TACTC--ATATCAG-AA-AGATGGACCT-Tatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacggtgttaatccgatgcaacttgtgatacccaatatacttccccc
gi|12 : -TTAATCCG--AT-GCAA--CTTGTGAT-ACCCAAT-A-TACTTCCC-----CC-------------atcccaaaaacacatacccgtgtcgaccttctggataccctgtgaacgaagtaacaagtagccacatggctggtcattcgaattcttctgtccaaagcagactga
gi|14 : gatacttgcaattcttgttgcaatcaatatataagcgagttattgcccctgtcaaataggtggaccttatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacggtgTCCATTTCA-------TGC-CCGCCTTTTTCCCTGCCAAAAG-ATGGATGCATGGCTGGCGCTCTAGAA-ATCTA--GTTAGT-TTAAGGT-AGA-TTACGGGCATGAAA-AG-AAGC-T--CTTAA-TTAT-AGATG-A
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GATATTCCATTGTACTGATCGAAGCCATATATTGGAAGCATCATTGCC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 111111 1111111111 11111 22222 1 2222 111111 1 1 2222 2222222 222222 1111 11 2222 111 11111 33333333333333 444444 1 111 222 111 1 1111 222 1 111111 2222 222 11 22222 111111 4444444444444444 1 33 1 111 11 222 111 111 1 3333 11 1 111 3333 1111 1111 111 2222222 111 1 111 77777777777777777777777777777777 1111 1 2222 1 1111 1 1 1 000000000000000000000000000000 11 11 3333333 1 111 111 11 1 11 1 1 1 1 111 1 1 11 1 11 2222 1111 1 1 1
lowQualScore : 77 33 1 000000 8888888888 66666 5 5 00000 0 1 1111 5 0 333333 0 5 2 5 1 5 5 5 7 5 0000 5 888 5 2 5 5 5 0 2222222 5 777 1 00 5 22 5 5 5 5 555555 4 5 66 0000 1 66 6 5 5 11 7777 6 444 8 666 99 8 66666 1 99999999999999 000000 3 888 4 5 888 5 222 5 5 1 8888 6 666 7 6 3 999999 6 4444 1 222 00 6 6 6 88 88888 99 6 999999 6 6 1 1111111111111111 0 5 7 6 6 00 8 8 5 444 0 0 8 11 8 11 000 0 8 0 444 3 111 0 0000 33 2 2 8 8 6 8 8 0 8 0 88 55 666 8 8 8 8 8 3333 1 8 11 888 9 8 8 0000 0 5555 3 6666 3 5 5 1 000 8888888 77 4 1 5 333 3 3 444 6 99 99 3 6 6 6 44444444444444444444444444444444 8 8 8 8 8 8 0 0 2222 8 0 8888 0 1111 0 0 0 444444444444444444444444444444 33 33 4444444 55 0 000 777 2 33 3 3 0 33 0 0 0 0 333 3 0 0 1 0 0 8 8 11 0 6 0 8 6 11 8 0 8 66 1 0 4444 8 8 2222 8 0 8 0 0
lowQualScore : .. .. . ...... .......... ..... . . ..... . . .... . . ...... . . . . . . . . . . .... . ... . . . . . . ....... . ... . .. . .. . . . . ...... . . .. .... . .. . . . .. .... . ... . ... .. . ..... . .............. ...... . ... . . ... . ... . . . .... . ... . . . ...... . .... . ... .. . . . .. ..... .. . ...... . . . ................ . . . . . .. . . . ... . . . .. . .. ... . . . ... . ... . .... .. . . . . . . . . . . .. .. ... . . . . . .... . . .. ... . . . .... . .... . .... . . . . ... ....... .. . . . ... . . ... . .. .. . . . . ................................ . . . . . . . . .... . . .... . .... . . . .............................. .. .. ....... .. . ... ... . .. . . . .. . . . . ... . . . . . . . . .. . . . . . .. . . . .. . . .... . . .... . . . . .
lowQualScore : 99 88 0 888888 4444444444 99999 0 0 66666 0 1 5555 0 4 555555 0 0 5 0 0 7 0 7 1 7 1111 7 666 3 7 7 7 7 1 6666666 0 111 4 55 0 22 0 0 0 0 111111 5 0 99 6666 4 99 5 0 0 99 5555 7 000 0 444 00 0 77777 0 22222222222222 000000 3 444 4 7 333 7 999 7 7 4 3333 7 777 3 7 3 222222 7 3333 5 000 33 3 7 7 33 33333 22 7 222222 7 7 0 6666666666666666 7 7 1 7 7 00 0 0 0 222 8 8 0 00 0 88 666 8 0 8 000 2 000 0 8888 22 5 0 0 0 0 0 0 8 0 8 88 88 888 0 0 0 0 0 0000 0 0 66 888 6 0 0 4444 1 0000 6 1111 6 7 7 0 000 9999999 99 4 7 7 111 6 8 000 7 22 22 7 7 7 7 44444444444444444444444444444444 0 0 0 0 0 0 8 8 6666 0 0 5555 0 0000 0 0 0 888888888888888888888888888888 22 88 0000000 00 0 555 555 5 22 2 2 0 22 0 0 0 0 555 2 0 0 0 8 2 0 0 00 8 0 8 0 4 00 0 8 0 44 0 8 6666 0 0 4444 0 6 0 0 0
consensus : AGATGCATTGAG--CTCCAAC--TCANGCACCTT-G-G-TGCTAA---AG-ACAATAAAG---A-AAAA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTTAAA-T---AC-AGAGTCAAATAG-NA-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAAAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACATT-GAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTGAAAA----TTT-----G--ACC-CCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAA-T-AT-TAG--TCTATGAAA-TGCAA-ATA-GAGACA-ATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCG-TTTT---ACCAGT-TTTAGAG-ACACCTGG-ACAGAATTATCTATCAA-GAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAAC-A-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GT-ACCCCCC------------CCCCC----------GCAG-AACAAGT-AGC-CGC-A-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTG-ATTCCCCC--T-CCAT-GCAGACGTGG-AC-AAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATT-G-ATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
Reference ( family-5183 ) : AGATGCATTGAG--CTCCAAC--TCANGCACCTT-G-G-TGCTAA---AG-ACAATAAAG---G-AAAA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGN-----TA-TACT-GGCCA-CGGCTNCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTTAAA-T---AC-AGAGTCAAATAG-NA-A-----AACNAAC-------------TGCTGAA------CACTA-CTGGTAAGT-CTAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAGAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACA-T-GAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATAT-G-ACTGANA-----TTT-----G--ACC-CCCA-CCCACTTGAA-T-GTCAGTATCATTGA--CC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTANTAGG--CGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAA-T-AT-TA---TCTATGAAA-TGCGA-ATA-GAGA-A-ATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCG-TTT----ANCAGT-TTTAGAG-ACGCCTGG-ACAGAATTATCTATCAA-GAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAAC-A-AGTNA---TTG------CCC--ATGTCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GT-ACCCCCC------------CCCCC----------GCA--AACAAGT-AGC-CGC-A-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTG-ATTCCCCC--T-CCAT-GCAGACGTGG-AC-AAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATT-G-ATA-ACGA-GCATATGTGGTGTAT-CTTTTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTGGCATGGCA-AG-ATGCGT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|1 : AGATGCATTGAG--CTCCAAC--TCAAGCACCTT-G-G-TGCTAA---AT-ACAATAAAA---G-AAAA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTGATTGCG-----TA--ACT-GGCCA-CGGCTGCTTATAAACAAT-AAGAG-GG---AGC-C-G-AGCATCA-AT-TAC-TGCC-ATTTGG-----C-ATC-C---TCGACTATAACAAGAGGAACT-GGTGAACCCT-GTGCA-CA-GATTGT--CACCA-G--TTT----GATCA--CC-AG-TACTGGACAATTC-A--TCA----TTATAA-T---AC-AGAGTCAAATAG-CA-A-----AACCAAC-------------TGCTGAA------CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CTGAG-ACTAATTGCC-TCT-GCGATAGTCTGCGGC-CACCCAGAATAGGCTAA-C-ATTAC-AA-AA---C-AAACGCTAACA-T-GAG---CAAATT-AAA-AA-TAA-----CGCCAAGTT--CCTC-GAGCCAA------AATGT-G-ACTGATA-----TTT-----G--ACC-CCCA-CCCACTTGAA-T-GTCTGTATCATTGA--CCGAATA-CT-TGGT-C-AAAAATTAGACCTCAACAATAAGAAC--A-GTACTAGG--TGA-TC-GAGTAGACAATTAAGTG---TCATAGACTT-CAA-T-AT-TAGGATCTATGAAA-TGCAA-ATA-GAGA-ACATAAACTA-TGA-TAAGTGAA-CAATCAAGTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCG-TTT----ACCAGT-TTTAGAG-ACACCTGGGACAGAATTAT-TATCAA-GAA-G--CTCGCAATGCTTGTTGCAATCGT--AAAT-TA-AA-AAAC-ATAGTAA---TT-------CCC--ATGCCGGAAAAGTTGGACCTT-TAAGGC-AAAGACATTT---TGT-TTAGTCTG-AT-GCAA--CTCCGGATAACCTAAT-GTTACCCCCC------------CC-------------ACA--AACAAGTGAGCACGC-AATGCCTTTGTGACTC-AA-TTCTAATTCT-T--CCATGGGCGGCTTGATTG-ATTCCCCC--T-CCAT-GCAGACGTGG-AC-AAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGTGTTGA-C-TA---GCCCTATGTTTACAGTTACT-GAAT-GTTGTTAGCTC-CAACGATT-G-ATA-ACGA-GCATATGTGGTGTAT-CTTCTAAC-ATG-TCTTAACCTGGAAT-AATCCCTTTCAGCCTCACTGC-CC--CCTTTGCCCTACCAAAAATCTGGATGCATTG-TGTCAATC--GAG-CTCTAATGTTGGCATCAAATTAAGA----TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|10 : AGATGCATTGAG--TTCCAGC--TTATACAC--------TGCCAA---TG-AAAATAACG---A-AAAA-TTAGCAAA-G--TACT-CAC-CAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-TGGCTTCT-ATAAACAAT-AAGAG-GG---GGC-C-G-AGCATCA-AT-TAC-TGCATTTTTGGA----C-ATT-C--TT-GACAATA-CAAGAAGAACT-GGTGAAACCT-CGGCA-CA-GA-TGCA-CACCA-G--TTT----GATTA--CCTAG-TACTGAACAATTC-A--T
gi|11 : ttataaaA-ATA-AA-A-A-ATAAACTAATGACTAAATGAA-CTATT--TTC--TCACT-AT-GGCAA-CACC-TTGTCCG-TTTTTGCCCCA-T-CTT-GAG-ACGTATGA-ACATAATAATCACTCAA-AAATG--CTTGCAATGCTTGTTGCAACT-T--ATATAC-----AAGC-A-AGTTA---TTG------TAC--ATGTC-AAAAAGT-GCATCTtta
gi|12 : taaatt--CTTGCAATTCTTGTTGCAATC-----AATATA-TA-AG-C-G-AGTTA---TTG------CCC--CTGTCAAATAGGT-GGACCTT-
gi|12 : gataGTGTTAATCCG-AT-GCAA--CTTGTGATA-CCCAAT-AT-ACTTCCC------------CCatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacggtgttaatccgatgcaacttgtgatacccaatatacttccccc
gi|13 : gatacttgcaattcttgttgcaatcaatatataagcgagttattgcccctgtcaaataggtggaccttatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacgAATGCTTGTTGCAA-------AATGTACAA-AAAT-A-AGTTG---TTA------CTC--ATATCAGAAAGAT-GGACCTT---ATCCCAAAAACACATACCCGTGTCGACCT------------TCTGGATA-CCCTGT-GA-A----------------------C----------GAAGTAACAAGT-AGC-CAC-A-TGGCTGG-TCATTC-GAATTC---TTCT-GT-CCAAAG-CAGACTGA
gi|14 : TCAT-GC-CCGCCTTTTTCCCTGCC-AAAAGATGGATGCATGGCTGGCGCTCTAGAA-ATCT-A-GTTAGT------TTAAGGTAGATTACGGGCATGAAA-AG-AAGC-T--CTTAA-TTAT-AGATG-A
gi|15 : ctccattAGATGCATTGAG--CTCCAAC--TCAAGCACCTT-G-G-TGCTAA---AT-ACA-TAAAG---A-AAAA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGAC-----TA-TACT-GGCCA-CGG
gi|16 : tataaaa-----TTG-----G--ACC-CCCAACCCACTTGAA-T-GTCA-------------------------------AAAATTAGACCTCAAGAATA-GCAC--A-GTACTAGG--CGAATC-GAGTAGACAATAAGGTG---TCATAGAC
gi|17 : tt-----AATAAA--------------TGCTGAA------CACTT-CTGGTAA-T-CTAAGAT--CTGCCTACCCGAACACTA---GCC-TTT-GC-
gi|2 : TATTGGG-----C-ATC-C--CTCGACA-TA-CAAGA--AAT---GTGAACCCT-GGGCA-CA-GATC-T--CAC-A-GAATTT----GATCA--CCTTGATACTTGACAATTC-A--TTAA---TTTAAA-T---AC-AA---CAAATA--CA-A-----AACAAAC-------------TGCTGAA------CACTA-CTGGTAACT-C-AAAATAG-TGCC-A-C-GAG-ACTA---GCC-TTT-GCTATATTCTGCG-C-CAC---AAGTAGGATAAAC-CTTACCAA------C-AAA---TAGCACT-GAGGG-C-AATT-AAA-AA---A-----CGCCAA--T--TCCC-GAGCCAA------ATTAT-G-A----AA-----TTTTTGG-G--ACC-CACAACCCACT-GAA-T-GTCAGTATCATTGAA-CC-AATA-CTGTGGTAT-AAAAAT-AGACCTCAACAATA-GAAC--A-ATAC-AGG----AATCCGATTA-ACAATAAGGTTATTTCATAGAACTTCAAAT-AG-TA----CAATGAA--T-CGA-CTA-GAGA-A-ATAAA-TA-T-ACTAAG-GAA-CAA-CA-GTTAGTCA---AGTCGCAC-C-CACTGGCCCGATTT----AACAGT-TT-AGAGTACACCTGG-ACAGAATTATCTATCAA-AGA-A--CTCGCAATGCTTGTTGCAATC-TCTAAATATA-AATAAAC-A-A-TAA---TT-------TCC--ATG-CGAAAAAGT-GGACCTGGTAAGGCTAAAGACATTT---TGTGTTAGTTGGCAT--CAA--CTCGG-ATA-CCTAAT-GT-ACCCCCC------------CCCCCCCCCCCCCCAGCA--AACAAGT-AGC-CGC-A-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGAATTCCCCC--TACCAT-GCAGACGTGT-GCAAAAT-TTGA-GTCC-AT--------A------------------C--CAGTG--TGCTA--ATT------------T-CCTTAAATTTGAAGCGCAAGTCGC-TAGACT-TA---GCCCTATTGTTACTGTTACTGGAA--G-TGTTAGCTC-C--CGATTGG-ATA-ACGA-GCATATATAGTGCAT-CTTCTAACAATG-TCTTAACCTGGAAT-AAATCCCTTCAGCCTCAC-GC-CC--CC-TTGCCCTGCC-AAAATCTGGATGCATTG-TGTCAATC---AG-CT-TAA--TTGGCATCAAATT-AGA----TTTCTAGCATGGCA-AG-ATGCGCAACTTAAGTTATG-AATG-ATGGACG-GTTG-ATtaatt
gi|3 : TAAGTGCCAAAATAGCTGCC-A-C-GAG-ACTA--TGCC-TCT-GC-ATAGTCTGCG-C-CACCA---GTAGGGTAA-C-ATTACCAA-AAA--C-AAA-GCTAACA-A-GAGGC-CAAGTT-AAA-AAATAA-----CGCCAAGTT--CCTC-GAGCCAAGAGCCAAATGTTG-ACTGAAT-----TTTTTTTGG--ACC-CCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CT-TGGT-C-AAAAATTAGACCTCA-CAATA-GAAC--A-GTAATAGG--TGAATC-GAGTAGACAA-AAGGTG---TCATAGACTTTCAA-T-ATATAG--TCTATGAAAATGCAA-ATA-CAGACA-ATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCG-TTTT---ACCAGT-TTTAGA---CACCTGG-ACAGAATTATCTATCAAAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AA---TA-AA-AAACCA-AGTAA---TTAAATTCTCTC--ATGCCGGAAAAGT-GGACC-T-TATGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCAGGATA-CCTAAT-GT-ACCCCCC------------CCCCCA---------GCA--AACAAGT-AGC-CGC-A-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTG-ATTCCCCC--TCCCAT-GCAGACGTGGAAA-AAAT-TTGA-GTCC-AT--------ATCGGGGTTGTTGACGGTAC--CAGTG-TTGCTA--ATTG---CCTAACCCTGCCTTGAATTTGAAGCGCAAGTCGT-TTGACCTTA---GTCCTATGTTTACTGTTACTGGAAT-GTTG-TAGCTC-C-ACGATT-G-ATA-ACGA-GCATATGTGGTGTATATTTTTAACAATG-TCTTAACCTGGAATAAATCCCTTTTAGCCTCAC-G--TC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTGGCATGGCA-AG-ATGCAT-ACTTAA-TTATG-AATGAATGGACGCGTAG-ATGTAT
gi|4 : aaaattgtagctatCAAGTT--CCTC-GAGCCAA------AATGT-GTACTGAAAATTTTTTT-----GGAACCGCCCA-CCCACTTGAAGT-GTCAGTATCATTGAAACC-AATAACTGTGGT-CGAAAAATTAGACCTCAACAATA-GAACCCACGTAATAGGGTTGAATC-GCGTAGACAATAAGGTG---TCATAGACTTTCAA-TGAT-TG---TCTATGAAA-TGCAATATAGGAGACA-ATAAACTC-TGACTAAGTGAAGCAATCA-GTCA-TCA-TGAG-CG-AGCC-CA-TGGCCCT-TTTA---AACAGTATTTAG-G-AC-CCTGG-ACAGAAATATCTATCAA-GAA-GGCTTCGCAA-GCTTGTTGCAATC-T--AAATATA-GA-AACC-A-AGGTATATTTT------CCCCGATGCTGG-AAAGT--GACCTT-T-AGGC--AAGACA-TT---TGTGTTAGTCTG-ATGGCAAATCTCAGGATA--CTAATCGT--CCCCCCTGACACCAGTGTCTCAC----------GCAGCAACAAGT-A-C-AGCAA-TGCCTGT-TGACTCTAAATTCTAATTCTGTTACCATGG-CGGCTTGATTG-ATTCCCCCCTC-CCATGGCAGACGTGG-AC-AAATATTGACGTCCTATCGTTTGTGA------------------CGACAGTGTTTGCTGACATTGTCCT--AACCCTG-CTTGAATTTGAAGCGCAAGTCGC-TTGACT-TAGGCGCGTTATGTTTACTGTTAGTGGAATGGTTGTTAGCTCAC-ACGATT-GAATAGACGAGGCATATGTGGTGTA---TTTTAACAATGTTCTTACACTGGAAT-AAATCCGTTAGGCCTCAC-GCTCC--CCTTTGCCCTGCCTAAAATCTGGATGCA-TG-TGTC-ATC--GAGACTCTAA-GTTGGCA--ATATTAAGAT---TTTCTAGCATGGCATAGCATGCAT-ACTTAA-TTATGATATG-ATGGACG-GGTGAATGTA
gi|5 : --CTCCAAC--TTACGCACCTT-T-G--GTT------------TAAAG---A-AAAACT-AGCAA--GAGTACTTCATTG--TGA-CTTTATTGGGA-----GAGTACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GGG-AGTATAAC-CTG-AATGTCA-ATGTACATGCCTATTTAT-----CCATC-C--CTCAAT--TA-TAAG-GGAACT-GGTAA---------TA-CATGGTTTA--CAT-G-G--TTT----GAT-A--CCTAG-TACTGGACAATTC-A--TTGAAATTTTAAA-TCTAGC-AAAGTAAGAAAG-GA-ACCTACAACTTAA-------------TACTAAAAAAT--TACTA-CTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCC-TCT-GC-ATAGTAT--TGC-CAACAA----ATGATAA-C-GATACCAA-AA---T-AAACAC---CATT-GAAGA-CGAATC-AAATAA-CGAGAC--CGCCTAGTT--CCCCTGTATTCT------AATAT-G-ACTGGAAAGAG-TTT-----G--G-C-CCCA-CCAGCGTTAG-TGGTCAGTATC
gi|6 : gcTCCAACCTTGACGCACCTTTG-GCTTCTAA---AG-A-------------AAAC-T-AGCAA--GAGTACTTCATTG--TGA-CTTTA-TTGGA-----GA-TACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GTG-GGTATAAC-C-G-AATGTCA-AT-TAC-TGCCTATTT---------ATC-CATCCCGTCAATT-AAAGCGGAACT-GGTAAACACT-GGTTA-CA------------TA-G--TTT----GATCA--CCTAG-TACTGG-CAATTC-AGTTGAT---TTTAAA-T---ACTAGA--CAAATAGATA-A-----AAAGAACCCATACAACTTAATACTAAAAAAAATTACTAGCTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCCGTCT-GC-ATAGTAT--TGC-CAACAAATGT--GA-AA-CGATAACCAATAA---CTAAACA--ACCATT-GAAGA-CGAATTCAAA-AA-TAACGAACCGCCTAGTTTCCCCT-GTATTCT------AATAT-G-ACTGGAAAGAG-TTT-----A--GGC-CCCA-CCtat
gi|7 : AGATGCATTGAGGGCTCGCAC--TCAAGCACCTT-GTG-GGCTGAGAGAGTACATTAAAG---A-AAAA-T-AG-AA--G--TACT-CGT-GA--GA-TTTTGATTGGC-----TAGTATTTAGCCATCGGCTGC--ATAGACAAT-A-GAGCGG---AGC-C-----CCTCA-AT-TAC-TGCCTATTGGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTG-ACCCT-GGGCAGCA-GAATGC--GACCACG--TTT----GAAAT--CCT-G-TACTGGACAATTC-AT-TCA----TTTAAAGT---AC-AGAGTCAAATAG-AAGA-----GACAAAC-------------TGCTGAAG-----CACTAGCT-GTAAG--CCAAAATAGCTGCC-A--CGAG-ACTA--TG-C-TCTGGC-ATAGTCTG-GGCGCACCA--AGTAGGG-AA-CAATTACCCA-AAGGGC-AAA-GGTAACA-TGGAGGGCCAAATT-AAA-AA-TAA-----CG
gi|8 : tataaCATTGAG--CTCCAGCCTTTATACACTTT-G---TGCTAAT--AG-AAAATAACG---ACAAAA-T--TCAATCG--TACT-CAC-CGATGACTTTTAATCGGCATAGTTA-TACT-GGCCA-CAGCTGCT--TAAACAATAA-GAG-AG----GC-C-GAAGCATCACAT-TAC-TGCAGTTTTGGATTTTT-ATTGC--TTGGACAATG-CAAGGAGAACTAGGTGAGCCCTCGGGCA-CA-GA-TGCCACACCA-G--TTTGTGAGATCGTTCCT---TACTGAAAAATTA-A--T
gi|9 : tattaaagaAGATGTATTGAA--TTCCAAC--TCATGCACCTT-G-G-TGCTAA---AG-ACAATAAAGAAAG-AAAA-A-AGCAAA-G--TACT-CTTCAAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-ACGAG-GG---AGTGT-G-A-CATCA-AT-TAC-TGCCTATTTGGG----C-ATC-A--CTTGACAATA-TAGGAGGAACT-GGTGAATCCT-GGGCA-CA-GATTCT--CACCA-G--TTT----GACCA--CCTAG-TACTGGACAATTCAA--TCA----TTTAAA-ttat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GATATTCCATTGTACTGATCGAAGCCATATATTGGAAGCATCATTGCC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 111 222222222222 22222 1 2222 11111 1 1 2222 2222222 222222 1111 11 2222 111 11111 33333333333333 444444 1 111 222 111 1 1111 1111 1 111111 2222 1 22222 111111 2222 444444 11 1 11 111 111 11 22222222 11 11 111 111 1111 1111 11111 111 2222222 222 1 111 666666666666666666666666666666666666666 1 11 1 2222 1 1111 1 1 1 000000000000000000000000000000 11 11 3333333 1 111 111 11 1 11 1 1 1 1 111 1 1 11 1 11 2222 1 1 1
lowQualScore : 77 33 1 000 666666666666 5 888 5 5 00000 0 1 1111 5 0 22222 0 5 2 5 0 5 5 5 7 5 0000 5 888 5 2 5 5 5 0 2222222 5 777 1 00 5 22 5 5 5 5 555555 4 5 66 0000 1 66 6 5 5 11 0000 6 6 444 8 666 99 8 66666 1 99999999999999 666666 3 888 4 5 888 5 222 5 5 1 8888 6 9999 7 7 6 3 999999 6 4444 1 1 6 6 6 6 88 88888 99 6 999999 6 6 3333 000000 888 66 8 88 5 999 0 0 8 11 8 0 444 0 8 0 444 3 33 11111111 33 2 8 8 55 8 0 8 0 88 55 666 8 8 8 8 6 444 8 11 888 3 8 8 0000 0 5555 3 11111 5 5 1 000 8888888 77 1 5 222 3 3 444 6 99 99 3 6 6 000000000000000000000000000000000000000 8 8 6 8 11 0 88 8 8 0 8888 0 1111 0 0 0 444444444444444444444444444444 33 33 4444444 55 0 000 777 2 33 3 3 0 33 0 0 0 0 333 3 0 0 1 0 0 8 8 11 0 6 0 8 6 11 8 0 8 66 1 0 4444 8 8 3 88 8 0 8 0 0
lowQualScore : .. .. . ... ............ . ... . . ..... . . .... . . ..... . . . . . . . . . . .... . ... . . . . . . ....... . ... . .. . .. . . . . ...... . . .. .... . .. . . . .. .... . . ... . ... .. . ..... . .............. ...... . ... . . ... . ... . . . .... . .... . . . . ...... . .... . . . . . . .. ..... .. . ...... . . .... ...... ... .. . .. . ... . . . .. . . ... . . . ... . .. ........ .. . . . .. . . . . .. .. ... . . . . . ... . .. ... . . . .... . .... . ..... . . . ... ....... .. . . ... . . ... . .. .. . . . ....................................... . . . . .. . .. . . . .... . .... . . . .............................. .. .. ....... .. . ... ... . .. . . . .. . . . . ... . . . . . . . . .. . . . . . .. . . . .. . . .... . . . .. . . . . .
lowQualScore : 99 88 0 666 888888888888 0 888 0 0 66666 0 1 5555 0 4 55555 0 0 5 0 7 7 0 7 1 7 1111 7 666 3 7 7 7 7 1 6666666 0 111 4 55 0 22 0 0 0 0 111111 5 0 99 6666 4 99 5 0 0 99 8888 7 7 000 0 444 00 0 77777 0 22222222222222 333333 3 444 0 7 333 7 999 7 7 4 3333 7 3333 3 3 7 3 222222 7 3333 5 3 7 3 7 7 33 33333 22 7 222222 7 7 5555 777777 333 00 0 88 0 222 8 8 0 00 0 8 888 8 0 8 000 2 22 22222222 22 5 0 0 66 0 8 0 8 88 88 888 0 0 0 0 0 000 0 66 888 8 0 0 4444 1 0000 6 11111 7 7 0 000 9999999 99 7 7 999 6 8 000 7 22 22 7 7 7 999999999999999999999999999999999999999 0 0 0 0 88 8 88 0 0 0 5555 0 0000 0 0 0 888888888888888888888888888888 22 88 0000000 00 0 555 555 5 22 2 2 0 22 0 0 0 0 555 2 0 0 0 8 2 0 0 00 8 0 8 0 4 00 0 8 0 44 0 8 6666 0 0 8 88 0 6 0 0 0
consensus : AGATGCATTGAG--CTCCAAC--TCANGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTT-AAA-T---AC-AGAGTCAAATAGN-A-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAAAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTGAAAA---TTTTT----GACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATC-AGTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTTAGAG-ACACCT-GGACAGAATTATCTATCAA-GAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAAC-A-AGTNA---TTG------CCC--ATGCCGGAAAAG-TGGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGAT-ACCTAAT-GTACCCC---------CC------------CCCCCAGCAG-AACAAGT-AGC-CGCAATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCAT-GGCGGCTTGATTG-ATTCCCCC--T-CCAT-GCAGACGTGG-AC-AAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATT-G-ATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
Reference ( family-5183 ) : AGATGCATTGAG--CTCCAAC--TCANGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTT-AAA-T---AC-AGAGTCAAATAGN-A-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAAAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTGAAAA---TTT------GACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATC-AGTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTTAGAG-ACACCT-GGACAGAATTATCTATCAA-GAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAAC-A-AGTNA---TTG------CCC--ATGCCGGAAAAG-TGGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGAT-ACCTAAT-GTACCCC---------CC------------CCCCC-GCAG-AACAAGT-AGC-CGC-ATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCAT-GGCGGCTTGATTG-ATTCCCCC--T-CCAT-GCAGACGTGG-AC-AAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATT-G-ATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|1 : AGATGCATTGAG--CTCCAAC--TCAAGCACCTTG-GTGCTAA---AT-ACAATAAAAG-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTGATTGCG-----TA--ACT-GGCCA-CGGCTGCTTATAAACAAT-AAGAG-GG---AGC-C-G-AGCATCA-AT-TAC-TGCC-ATTTGG-----C-ATC-C---TCGACTATAACAAGAGGAACT-GGTGAACCCT-GTGCA-CA-GATTGT--CACCA-G--TTT----GATCA--CC-AG-TACTGGACAATTC-A--TCA----TTA-TAA-T---AC-AGAGTCAAATAGC-A-A-----AACCAAC-------------TGCTGAA------CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CTGAG-ACTAATTGCC-TCT-GCGATAGTCTGCGGC-CACCCAGAATAGGCTAA-C-ATTAC-AA-AA---C-AAACGCTAACAT---GAG-CAAATT-AAA-AA-TAA-----CGCCAAGTT--CCTC-GAGCCAA------AATGT-G-ACTGATA----TTT------GACCCCCA-CCCACTTGAA-T-GTCTGTATCATTGA--CCGAATA-CT-TGGT-C-AAAAATTAGACCTCAACAATAAGAAC--A-GTACTAGG--TGA-TC-GAGTAGACAATTAAGTG---TCATAGACTT-CAAT-AT-TAGGAT-CTATGAAA-TGCAA-ATA-GAGAACATAAACTA-TGA-TAAGTGAA-CAATCAAGTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCG-TTT---ACCAGT-TTTAGAG-ACACCTGGGACAGAATTAT-TATCAA-GAA-G--CTCGCAATGCTTGTTGCAATCGT--AAAT-TA-AA-AAAC-ATAGTAA---TT-------CCC--ATGCCGGAAAAGTTGGACCTT-TAAGGC-AAAGACATTT---TGT-TTAGTCTG-AT-GCAA--CTCCGGATAACCTAAT-GT--TAC---------CC------------CCCCC-ACA--AACAAGTGAGCACGCAATGCCTTTGTGACTC--AATTCTAATTC--TT-CCATGGGCGGCTTGATTG-ATTCCCCC--T-CCAT-GCAGACGTGG-AC-AAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGTGTTGA-C-TA---GCCCTATGTTTACAGTTACT-GAAT-GTTGTTAGCTC-CAACGATT-G-ATA-ACGA-GCATATGTGGTGTAT-CTTCTAAC-ATG-TCTTAACCTGGAAT-AATCCCTTTCAGCCTCACTGC-CC--CCTTTGCCCTACCAAAAATCTGGATGCATTG-TGTCAATC--GAG-CTCTAATGTTGGCATCAAATTAAGA----TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|10 : AGATGCATTGAG--TTCCAGC--TTATACAC------TGCCAA---TG-AAAATAACGA-AA---AA-TTAGCAAA-G--TACT-CAC-CAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-TGGCTTCT-ATAAACAAT-AAGAG-GG---GGC-C-G-AGCATCA-AT-TAC-TGCATTTTTGGA----C-ATT-C--TT-GACAATA-CAAGAAGAACT-GGTGAAACCT-CGGCA-CA-GA-TGCA-CACCA-G--TTT----GATTA--CCTAG-TACTGAACAATTC-A--T
gi|11 : ttataaaA-ATA-AAAA--ATAAACTAATGACTAAATGAA-CTATT--TTC--TCACT-AT-GGCAA-CACC-TTGTCCGTTTTTGCCCCA-T-CTT-GAG-ACGTAT-GAACATAATAATCACTCAA-AAATG--CTTGCAATGCTTGTTGCAACT-T--ATATAC-----AAGC-A-AGTTA---TTG------TAC--ATGTC-AAAAAG-TGCATCTtta
gi|12 : taaatt--CTTGCAATTCTTGTTGCAATC-----AATAT--AT-AAGC-G-AGTTA---TTG------CCC--CTGTCAAATAGG-TGGACCTT-
gi|12 : gataGTGTTAATCCG-AT-GCAA--CTTGTGAT-ACCCAAT-ATACTTC---------CC------------CCatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacggtgttaatccgatgcaacttgtgatacccaatatacttccccc
gi|13 : gatacttgcaattcttgttgcaatcaatatataagcgagttattgcccctgtcaaataggtggaccttatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacgAATGCTTGTTGCAA-------AATGTACAA-AAAT-A-AGTTG---TTA------CTC--ATATCAGAAAGA-TGGACCTT---ATCCCAAAAACACATACCCGTGTCGACCT------------TCTGGAT-ACCCTGT-GAA-------------------------------C-GAAGTAACAAGT-AGC-CAC-ATGGCTGG-TCATTC-GAATTC---TTCT-GT-CCAA-AGCAGACTGA
gi|14 : TCAT-GC-CCGCCTTTTTCCCTGCC-AAAAGATGGATGCATGGCTGGCGCTCTAGAA-ATCT-A-GTTAGT------TTAAGGTAGATTACGGGCATGAAA-AG-AAGC-T--CTTAA-TTAT-AGATG-A
gi|15 : ctccattAGATGCATTGAG--CTCCAAC--TCAAGCACCTTG-GTGCTAA---AT-ACA-TAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGAC-----TA-TACT-GGCCA-CGG
gi|16 : tataaaa---TTG------GACCCCCAACCCACTTG------------------------AAT-------GT-C-AAAAATTAGACCTCAAGAATA-GCAC--A-GTACTAGG--CGAATC-GAGTAGACAATAAGGTG---TCATAGAC
gi|17 : tt-----AATAAA--------------TGCTGAA------CACTT-CTGGTAA-T-CTAAGAT--CTGCCTACCCGAACACTA---GCC-TTT-GC-
gi|2 : TATTGGG-----C-ATC-C--CTCGACA-TA-CAAGA--AAT---GTGAACCCT-GGGCA-CA-GATC-T--CAC-A-GAATTT----GATCA--CCTTGATACTTGACAATTC-A--TTAA---TTT-AAA-T---AC-AA---CAAATA-C-A-A-----AACAAAC-------------TGCTGAA------CACTA-CTGGTAACT-C-AAAATAG-TGCC-A-C-GAG-ACTA---GCC-TTT-GCTATATTCTGCG-C-CAC---AAGTAGGATAAAC-CTTACCAA------C-AAA---TAGCACTGAGGG-C-AATT-AAA-AA---A-----CGCCAA--T--TCCC-GAGCCAA------ATTAT-G-A-----AA---TTTTTGG--GACCCACAACCCACT-GAA-T-GTCAGTATCATTGAA-CC-AATA-CTGTGGTAT-AAAAAT-AGACCTCAACAATA-GAAC--A-ATAC-AGG----AATCCGATTA-ACAATAAGGTTATTTCATAGAACTTCAA--AT--AG--TACAATGAA--T-CGA-CTA-GAGA-AATAAA-TA-T-ACTAAG-GAA-CAA-C-AGTTAGTCA---AGTCGCAC-C-CACTGGCCCGATTT---AACAGT-TT-AGAGTACACCT-GGACAGAATTATCTATCAA-AGA-A--CTCGCAATGCTTGTTGCAATC-TCTAAATATA-AATAAAC-A-A-TAA---TT-------TCC--ATGC-GAAAAAG-TGGACCTGGTAAGGCTAAAGACATTT---TGTGTTAGTTGGCAT--CAA--CTCGG-AT-ACCTAAT-GTACCCCCCCCCCCCCCC------------CCCCCAGCA--AACAAGT-AGC-CGC-ATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCAT-GGCGGCTTGATTGAATTCCCCC--TACCAT-GCAGACGTGT-GCAAAAT-TTGA-GTCC-AT--------A------------------C--CAGTG--TGCTA--ATT------------T-CCTTAAATTTGAAGCGCAAGTCGC-TAGACT-TA---GCCCTATTGTTACTGTTACTGGAA--G-TGTTAGCTC-C--CGATTGG-ATA-ACGA-GCATATATAGTGCAT-CTTCTAACAATG-TCTTAACCTGGAAT-AAATCCCTTCAGCCTCAC-GC-CC--CC-TTGCCCTGCC-AAAATCTGGATGCATTG-TGTCAATC---AG-CT-TAA--TTGGCATCAAATT-AGA----TTTCTAGCATGGCA-AG-ATGCGCAACTTAAGTTATG-AATG-ATGGACG-GTTG-ATtaatt
gi|3 : TAAGTGCCAAAATAGCTGCC-A-C-GAG-ACTA--TGCC-TCT-GC-ATAGTCTGCG-C-CACCA---GTAGGGTAA-C-ATTACCAA-AAA--C-AAA-GCTAACAA-GAGGC-CAAGTT-AAA-AAATAA-----CGCCAAGTT--CCTC-GAGCCAAGAGCCAAATGTTG-ACTGAATT---TTTTTTG--GACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CT-TGGT-C-AAAAATTAGACCTCA-CAATA-GAAC--A-GTAATAGG--TGAATC-GAGTAGACAA-AAGGTG---TCATAGACTTTCAAT-ATATAG--T-CTATGAAAATGCAA-ATA-CAGACAATAAACTA-TGACTAAGTGAA-CAATC-AGTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTTAGA---CACCT-GGACAGAATTATCTATCAAAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AA---TA-AA-AAACCA-AGTAA---TTAAATTCTCTC--ATGCCGGAAAAG-TGGACCTT--ATGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCAGGAT-ACCTAAT-GTACCCC---------CC------------CCCCCAGCA--AACAAGT-AGC-CGC-ATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCAT-GGCGGCTTGATTG-ATTCCCCC--TCCCAT-GCAGACGTGGAAA-AAAT-TTGA-GTCC-AT--------ATCGGGGTTGTTGACGGTAC--CAGTG-TTGCTA--ATTG---CCTAACCCTGCCTTGAATTTGAAGCGCAAGTCGT-TTGACCTTA---GTCCTATGTTTACTGTTACTGGAAT-GTTG-TAGCTC-C-ACGATT-G-ATA-ACGA-GCATATGTGGTGTATATTTTTAACAATG-TCTTAACCTGGAATAAATCCCTTTTAGCCTCAC-G--TC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTGGCATGGCA-AG-ATGCAT-ACTTAA-TTATG-AATGAATGGACGCGTAG-ATGTAT
gi|4 : aaaattgtagctatCAAGTT--CCTC-GAGCCAA------AATGT-GTACTGAAAA---TTTTTTTGGAACCGCCCACCCACTTGAAGT-GTCAGTATCATTGAAACC-AATAACTGTGGT-CGAAAAATTAGACCTCAACAATA-GAACCCACGTAATAGGGTTGAATC-GCGTAGACAATAAGGTG---TCATAGACTTTCAATGAT-T-G--T-CTATGAAA-TGCAATATAGGAGACAATAAACTC-TGACTAAGTGAAGCAATC-AGTCA-TCA-TGAG-CG-AGCC-CA-TGGCCCTTTTA---AACAGTATTTAG-G-AC-CCT-GGACAGAAATATCTATCAA-GAA-GGCTTCGCAA-GCTTGTTGCAATC-T--AAATATA-GA-AACC-A-AGGTATATTTT------CCCCGATGCTGG-AAAG-T-GACCTT-T-AGGC--AAGACA-TT---TGTGTTAGTCTG-ATGGCAAATCTCAGGAT-A-CTAATCGT-CCCC---------CCTGACACCAGTGTCTCAC-GCAGCAACAAGT-A-C-AGCAATGCCTGT-TGACTCTAAATTCTAATTCTGTTACCAT-GGCGGCTTGATTG-ATTCCCCCCTC-CCATGGCAGACGTGG-AC-AAATATTGACGTCCTATCGTTTGTGA------------------CGACAGTGTTTGCTGACATTGTCCT--AACCCTG-CTTGAATTTGAAGCGCAAGTCGC-TTGACT-TAGGCGCGTTATGTTTACTGTTAGTGGAATGGTTGTTAGCTCAC-ACGATT-GAATAGACGAGGCATATGTGGTGTA---TTTTAACAATGTTCTTACACTGGAAT-AAATCCGTTAGGCCTCAC-GCTCC--CCTTTGCCCTGCCTAAAATCTGGATGCA-TG-TGTC-ATC--GAGACTCTAA-GTTGGCA--ATATTAAGAT---TTTCTAGCATGGCATAGCATGCAT-ACTTAA-TTATGATATG-ATGGACG-GGTGAATGTA
gi|5 : --CTCCAAC--TTACGCACCTTT-G-GTT------------TAAAGA-AA---AACT-AGCAA--GAGTACTTCATTG--TGA-CTTTATTGGGA-----GAGTACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GGG-AGTATAAC-CTG-AATGTCA-ATGTACATGCCTATTTAT-----CCATC-C--CTCAAT--TA-TAAG-GGAACT-GGTAA---------TA-CATGGTTTA--CAT-G-G--TTT----GAT-A--CCTAG-TACTGGACAATTC-A--TTGAAATTTT-AAA-TCTAGC-AAAGTAAGAAAGG-A-ACCTACAACTTAA-------------TACTAAAAAAT--TACTA-CTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCC-TCT-GC-ATAGTAT--TGC-CAACAAA--T--GATAA-C-GATACCAA-AA---T-AAACAC---CATTGAAGA-CGAATC-AAATAA-CGAGAC--CGCCTAGTT--CCCCTGTATTCT------AATAT-G-ACTGGAAAGAGTTT------GGCCCC--ACCAGCGTTAG-TGGTCAGTATC
gi|6 : gcTCCAACCTTGACGCACCTTT-G-GCTT--------C--TAAAGA-AA---AC-T-AGCAA--GAGTACTTCATTG--TGA-CTTTA-TTGGA-----GA-TACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GTG-GGTATAAC-C-G-AATGTCA-AT-TAC-TGCCTATTT---------ATC-CATCCCGTCAATT-AAAGCGGAACT-GGTAAACACT-GGTTA-CA------------TA-G--TTT----GATCA--CCTAG-TACTGG-CAATTC-AGTTGA----TTTTAAA-T---ACTAGA--CAAATAGATA-A-----AAAGAACCCATACAACTTAATACTAAAAAAAATTACTAGCTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCCGTCT-GC-ATAGTAT--TGC-CAACAAATGT--GA-AA-CGATAACCAATAA---CTAAACA--ACCATTGAAGA-CGAATTCAAA-AA-TAACGAACCGCCTAGTTTCCCCT-GTATTCT------AATAT-G-ACTGGAAAGAGTTT------AGGCCCCAtat
gi|7 : AGATGCATTGAGGGCTCGCAC--TCAAGCACCTTGTGGGCTGAGAGAGTACATTAAAGA-AA---AA-T-AG-AA--G--TACT-CGT-GA--GA-TTTTGATTGGC-----TAGTATTTAGCCATCGGCTGC--ATAGACAAT-A-GAGCGG---AGC-C-----CCTCA-AT-TAC-TGCCTATTGGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTG-ACCCT-GGGCAGCA-GAATGC--GACCACG--TTT----GAAAT--CCT-G-TACTGGACAATTC-AT-TCA----TTT-AAAGT---AC-AGAGTCAAATAGA-AGA-----GACAAAC-------------TGCTGAAG-----CACTAGCT-GTAAG--CCAAAATAGCTGCC-A--CGAG-ACTA--TG-C-TCTGGC-ATAGTCTG-GGCGCACC--AAGTAGGG-AA-CAATTACCCA-AAGGGC-AAA-GGTAACATGGAGGGCCAAATT-AAA-AA-TAA-----CGcc
gi|8 : tataaCATTGAG--CTCCAGCCTTTATACACTTTG--TGCTAAT--AG-AAAATAACGACAA---AA-T--TCAATCG--TACT-CAC-CGATGACTTTTAATCGGCATAGTTA-TACT-GGCCA-CAGCTGCT--TAAACAATAA-GAG-AG----GC-C-GAAGCATCACAT-TAC-TGCAGTTTTGGATTTTT-ATTGC--TTGGACAATG-CAAGGAGAACTAGGTGAGCCCTCGGGCA-CA-GA-TGCCACACCA-G--TTTGTGAGATCGTTCCT---TACTGAAAAATTA-A--T
gi|9 : tattaaagaAGATGTATTGAA--TTCCAAC--TCATGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AAGAAAA-A-AGCAAA-G--TACT-CTTCAAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-ACGAG-GG---AGTGT-G-A-CATCA-AT-TAC-TGCCTATTTGGG----C-ATC-A--CTTGACAATA-TAGGAGGAACT-GGTGAATCCT-GGGCA-CA-GATTCT--CACCA-G--TTT----GACCA--CCTAG-TACTGGACAATTCAA--TCA----TTT-AAA-ttat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GATATTCCATTGTACTGATCGAAGCCATATATTGGAAGCATCATTGCC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 111 222222222222 22222 1 2222 11111 1 1 2222 2222222 222222 1111 11 2222 111 11111 33333333333333 444444 1 111 222 111 1 1111 1111 1 111111 2222 1 22222 111111 11111111 2222222 11 1 11 111 111 11 22222222 11 11 111 2222 11 1111 1111 11111 111 2222222 111 1 111 7777777777777777777777777777777 11 1111 1 2222 1 1 111 1 1 000000000000000000000000000000 1 11 3333333 1 111 111 11 1 11 2 1 1 111 1 1 11 1 11 2222 1 1 1
lowQualScore : 77 33 1 000 666666666666 5 888 5 5 00000 0 1 1111 5 0 22222 0 5 2 5 0 5 5 5 7 5 0000 5 888 5 2 5 5 5 0 2222222 5 777 1 00 5 22 5 5 5 5 555555 4 5 66 0000 1 66 6 5 5 11 7777 6 444 8 666 99 8 66666 1 99999999999999 666666 3 888 4 5 888 5 222 5 5 1 8888 6 9999 7 7 6 3 999999 6 4444 1 1 6 6 6 6 88 88888 99 6 999999 6 6 44444444 0000000 888 66 8 88 5 999 0 0 8 11 8 0 444 0 8 0 444 3 33 11111111 33 2 8 8 55 8 0 8 0 88 55 666 8 8 8 8 0000 8 11 0 8 3 8 8 0000 0 5555 1 0 11111 5 5 1 000 8888888 77 1 5 333 3 3 444 6 99 99 3 6 6 3 1 7777777777777777777777777777777 8 8 11 8 8 0 0 2222 8 0 8888 0 0 111 0 0 444444444444444444444444444444 0 3 33 4444444 55 0 000 777 2 33 3 3 0 33 0 0 0 333 3 0 0 1 0 0 8 8 11 0 6 0 8 6 11 8 0 8 66 1 0 4444 8 8 3 88 8 0 8 0 0
lowQualScore : .. .. . ... ............ . ... . . ..... . . .... . . ..... . . . . . . . . . . .... . ... . . . . . . ....... . ... . .. . .. . . . . ...... . . .. .... . .. . . . .. .... . ... . ... .. . ..... . .............. ...... . ... . . ... . ... . . . .... . .... . . . . ...... . .... . . . . . . .. ..... .. . ...... . . ........ ....... ... .. . .. . ... . . . .. . . ... . . . ... . .. ........ .. . . . .. . . . . .. .. ... . . . . .... . .. . . . . . .... . .... . . ..... . . . ... ....... .. . . ... . . ... . .. .. . . . . . ............................... . . .. . . . . .... . . .... . . ... . . .............................. . . .. ....... .. . ... ... . .. . . . .. . . . ... . . . . . . . . .. . . . . . .. . . . .. . . .... . . . .. . . . . .
lowQualScore : 99 88 0 666 888888888888 0 888 0 0 66666 0 1 5555 0 4 55555 0 0 5 0 7 7 0 7 1 7 1111 7 666 3 7 7 7 7 1 6666666 0 111 4 55 0 22 0 0 0 0 111111 5 0 99 6666 4 99 5 0 0 99 5555 7 000 0 444 00 0 77777 0 22222222222222 333333 3 444 0 7 333 7 999 7 7 4 3333 7 3333 3 3 7 3 222222 7 3333 5 3 7 3 7 7 33 33333 22 7 222222 7 7 33333333 1111111 333 00 0 88 0 222 8 8 0 00 0 8 888 8 0 8 000 2 22 22222222 22 5 0 0 66 0 8 0 8 88 88 888 0 0 0 0 0000 0 44 8 0 8 0 0 4444 1 0000 7 1 11111 7 7 0 000 9999999 99 7 7 111 6 8 000 7 22 22 7 7 7 5 0 5555555555555555555555555555555 0 0 44 0 0 8 8 6666 0 0 5555 0 0 000 0 0 888888888888888888888888888888 0 2 88 0000000 00 0 555 555 5 22 2 2 0 22 0 0 0 555 2 0 0 0 8 2 0 0 00 8 0 8 0 4 00 0 8 0 44 0 8 6666 0 0 8 88 0 6 0 0 0
consensus : AGATGCATTGAG--CTCCAAC--TCANGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTTAAA-T---AC-AGAGTCAAATAG-NA-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAAAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTG--AAAAT-TTTT----G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTTAGAG-ACACCTGG-ACAGAATTATCTATC-AAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAA-CA-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCAG-AACAAGT-AGC-CGCAATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATTGGATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
Reference ( family-5183 ) : AGATGCATTGAG--CTCCAAC--TCANGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTTAAA-T---AC-AGAGTCAAATAG-NA-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAAAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTG--AAAAT-TTTT----G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTTAGAG-ACACCTGG-ACAGAATTATCTATC-AAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAA-CA-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCAG-AACAAGT-AGC-CGCAATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATTG-ATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|1 : AGATGCATTGAG--CTCCAAC--TCAAGCACCTTG-GTGCTAA---AT-ACAATAAAAG-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTGATTGCG-----TA--ACT-GGCCA-CGGCTGCTTATAAACAAT-AAGAG-GG---AGC-C-G-AGCATCA-AT-TAC-TGCC-ATTTGG-----C-ATC-C---TCGACTATAACAAGAGGAACT-GGTGAACCCT-GTGCA-CA-GATTGT--CACCA-G--TTT----GATCA--CC-AG-TACTGGACAATTC-A--TCA----TTATAA-T---AC-AGAGTCAAATAG-CA-A-----AACCAAC-------------TGCTGAA------CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CTGAG-ACTAATTGCC-TCT-GCGATAGTCTGCGGC-CACCCAGAATAGGCTAA-C-ATTAC-AA-AA---C-AAACGCTAACAT---GAG-CAAATT-AAA-AA-TAA-----CGCCAAGTT--CCTC-GAGCCAA------AATGT-G-ACTG--ATA----TTT----G--ACCCCCA-CCCACTTGAA-T-GTCTGTATCATTGA--CCGAATA-CT-TGGT-C-AAAAATTAGACCTCAACAATAAGAAC--A-GTACTAGG--TGA-TC-GAGTAGACAATTAAGTG---TCATAGACTT-CAAT-AT-TAGGAT-CTATGAAA-TGCAA-ATA-GAGAACATAAACTA-TGA-TAAGTGAA-CAATCAAGTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTT----ACCAGT-TTTAGAG-ACACCTGGGACAGAATTAT-TATC-AAGAA-G--CTCGCAATGCTTGTTGCAATCGT--AAAT-TA-AA-AAA-CATAGTAA---TT-------CCC--ATGCCGGAAAAGTTGGACCTT-TAAGGC-AAAGACATTT---TGT-TTAGTCTG-AT-GCAA--CTCCGGATAACCTAAT-GTTACCCCC-----CC-----CAC---------A------AACAAGTGAGCACGCAATGCCTTTGTGACTC-AA-TTCTAATTCT-T--CCATGGGCGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGTGTTGA-C-TA---GCCCTATGTTTACAGTTACT-GAAT-GTTGTTAGCTC-CAACGATTG-ATA-ACGA-GCATATGTGGTGTAT-CTTCTAAC-ATG-TCTTAACCTGGAAT-AATCCCTTTCAGCCTCACTGC-CC--CCTTTGCCCTACCAAAAATCTGGATGCATTG-TGTCAATC--GAG-CTCTAATGTTGGCATCAAATTAAGA----TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|10 : AGATGCATTGAG--TTCCAGC--TTATACAC------TGCCAA---TG-AAAATAACGA-AA---AA-TTAGCAAA-G--TACT-CAC-CAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-TGGCTTCT-ATAAACAAT-AAGAG-GG---GGC-C-G-AGCATCA-AT-TAC-TGCATTTTTGGA----C-ATT-C--TT-GACAATA-CAAGAAGAACT-GGTGAAACCT-CGGCA-CA-GA-TGCA-CACCA-G--TTT----GATTA--CCTAG-TACTGAACAATTC-A--T
gi|11 : ttataaaA-ATA-AAAA--ATAAACTAATGACTAAATGAA-CTATT--TTC--TCACT-AT-GGCAA-CACC-TTGTCCGTTTTTGCCCCA-T-CTT-GAG-ACGTATGA-ACATAATAATCACTC-AAAAATG--CTTGCAATGCTTGTTGCAACT-T--ATATAC-----AAG-CA-AGTTA---TTG------TAC--ATGTC-AAAAAGT-GCATCTtta
gi|12 : taaatt--CTTGCAATTCTTGTTGCAATC-----AATAT--AT-AAG-CG-AGTTA---TTG------CCC--CTGTCAAATAGGT-GGACCTT-
gi|12 : gataGTGTTAATCCG-AT-GCAA--CTTGTGATA-CCCAAT-ATACTTCCC-----CC-----atcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacggtgttaatccgatgcaacttgtgatacccaatatacttccccc
gi|13 : gatacttgcaattcttgttgcaatcaatatataagcgagttattgcccctgtcaaataggtggaccttatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacgAATGCTTGTTGCAA-------AATGTACAA-AAA-TA-AGTTG---TTA------CTC--ATATCAGAAAGAT-GGACCTT---ATCCCAAAAACACATACCCGTGTCGACCT------------TCTGGATA-CCCTGT-GAAC-------------------------------GAAGTAACAAGT-AGC-CAC-ATGGCTGG-TCATTC-GAATTC---TTCT-GT-CCAAAG-CAGACTGA
gi|14 : TCAT-GC-CCGCCTTTTTCCCTGCC-AAAAGATGGATGCATGGCTGGCGCTCTAGAA-ATCT-A-GTTAGT------TTAAGGTAGATTACGGGCATGAAA-AG-AAGC-T--CTTAA-TTAT-AGATG-A
gi|15 : ctccattAGATGCATTGAG--CTCCAAC--TCAAGCACCTTG-GTGCTAA---AT-ACA-TAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGAC-----TA-TACT-GGCCA-CGG
gi|16 : tataaaaT-TTTG----G--ACCCCCAACCCACTTG------------------------AAT-------GT-C-AAAAATTAGACCTCAAGAATA-GCAC--A-GTACTAGG--CGAATC-GAGTAGACAATAAGGTG---TCATAGAC
gi|17 : -----AATAAA--------------TGCTGAA------CACTT-CTGGTAA-T-CTAAGAT--CTGCCTACCCGAACACTA---GCC-TTT-GC-
gi|2 : TATTGGG-----C-ATC-C--CTCGACA-TA-CAAGA--AAT---GTGAACCCT-GGGCA-CA-GATC-T--CAC-A-GAATTT----GATCA--CCTTGATACTTGACAATTC-A--TTAA---TTTAAA-T---AC-AA---CAAATA--CA-A-----AACAAAC-------------TGCTGAA------CACTA-CTGGTAACT-C-AAAATAG-TGCC-A-C-GAG-ACTA---GCC-TTT-GCTATATTCTGCG-C-CAC---AAGTAGGATAAAC-CTTACCAA------C-AAA---TAGCACTGAGGG-C-AATT-AAA-AA---A-----CGCCAA--T--TCCC-GAGCCAA------ATTAT-G-A-------AAT-TTTT----GGGACCCACAACCCACT-GAA-T-GTCAGTATCATTGAA-CC-AATA-CTGTGGTAT-AAAAAT-AGACCTCAACAATA-GAAC--A-ATAC-AGG----AATCCGATTA-ACAATAAGGTTATTTCATAGAACTTCAA--AT--AG--TACAATGAA--T-CGA-CTA-GAGA-AATAAA-TA-T-ACTAAG-GAA-CAA-CA-GTTAGTCA---AGTCGCAC-C-CACTGGCCCGATTT---AACAGT-TT-AGAGTACACCTGG-ACAGAATTATCTATC-AAAGA-A--CTCGCAATGCTTGTTGCAATC-TCTAAATATA-AATAAA-CA-A-TAA---TT-------TCC--ATGC-GAAAAAGT-GGACCTGGTAAGGCTAAAGACATTT---TGTGTTAGTTGGCAT--CAA--CTCGG-ATA-CCTAAT-GTACCCCCC-----CC-----CCCCCCCCCCCCA-GCA--AACAAGT-AGC-CGCA-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGAATTCCCCC--TACCAT-GCAGACGTGT-GCAAAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-T-GCTA--ATT------------T-CCTTAAATTTGAAGCGCAAGTCGC-TAGACT-TA---GCCCTATTGTTACTGTTACTGGAA--GT-GTTAGCTC-C--CGATTGGATA-ACGA-GCATATATAGTGCAT-CTTCTAACAATG-TCTTAACCTGGAAT-AAATCCCTTCAGCCTCAC-GC-CC--CC-TTGCCCTGCC-AAAATCTGGATGCATTG-TGTCAATC---AG-CT-TAA--TTGGCATCAAATT-AGA----TTTCTAGCATGGCA-AG-ATGCGCAACTTAAGTTATG-AATG-ATGGACG-GTTG-ATtaatt
gi|3 : TAAGTGCCAAAATAGCTGCC-A-C-GAG-ACTA--TGCC-TCT-GC-ATAGTCTGCG-C-CACCA---GTAGGGTAA-C-ATTACCAA-AAA--C-AAA-GCTAACAA-GAGGC-CAAGTT-AAA-AAATAA-----CGCCAAGTT--CCTC-GAGCCAAGAGCCAAATGTTG-ACTG--AATTT-TTTTTG--G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CT-TGGT-C-AAAAATTAGACCTCA-CAATA-GAAC--A-GTAATAGG--TGAATC-GAGTAGACAA-AAGGTG---TCATAGACTTTCAAT-ATATAG--T-CTATGAAAATGCAA-ATA-CAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTT--AG-ACACCTGG-ACAGAATTATCTATCAAAGAA-G--CTCGCAATGCTTGTTGCAATC-T--A---ATA-AA-AAACCA-AGTAA---TTAAATTCTCTC--ATGCCGGAAAAGT-GGACC-T-TATGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCAGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCA--AACAAGT-AGC-CGC-ATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--TCCCAT-GCAGACGTGGAAAAAA-T-TTGA-GTCC-AT--------ATCGGGGTTGTTGACGGTAC--CAGTG-TTGCTA--ATTG---CCTAACCCTGCCTTGAATTTGAAGCGCAAGTCGT-TTGACCTTA---GTCCTATGTTTACTGTTACTGGAAT-GTTG-TAGCTC-C-ACGATTG-ATA-ACGA-GCATATGTGGTGTATATTTTTAACAATG-TCTTAACCTGGAATAAATCCCTTTTAGCCTCAC-G--TC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTGGCATGGCA-AG-ATGCAT-ACTTAA-TTATG-AATGAATGGACGCGTAG-ATGTAT
gi|4 : aaaattgtagctatCAAGTT--CCTC-GAGCCAA------AATGT-GTACTG--AAAAT-TTTTTTGGA--ACCGCCCACCCACTTGAAGT-GTCAGTATCATTGAAACC-AATAACTGTGGT-CGAAAAATTAGACCTCAACAATA-GAACCCACGTAATAGGGTTGAATC-GCGTAGACAATAAGGTG---TCATAGACTTTCAATGAT-T-G--T-CTATGAAA-TGCAATATAGGAGACAATAAACTC-TGACTAAGTGAAGCAATCA-GTCA-TCA-TGAG-CG-AGCC-CA-TGGCCCTTTTA---AACAGTATTTAG-G-AC-CCTGG-ACAGAAATATCTATC-AAGAA-GGCTTCGCAA-GCTTGTTGCAATC-T--AAATATA-GA-AAC-CA-AGGTATATTTT------CCCCGATGCTGG-AAAGT--GACCTT-T-AGGC--AAGACA-TT---TGTGTTAGTCTG-ATGGCAAATCTCAGGATA--CTAATCGT-CCCCCCTGACACCAGTGTCTC---------ACGCAGCAACAAGT-A-C-AGCAATGCCTGT-TGACTCTAAATTCTAATTCTGTTACCATGG-CGGCTTGATTGA-TTCCCCCCTC-CCATGGCAGACGTGG-ACAAA-TATTGACGTCCTATCGTTTGTGA------------------CGACAGTGTTTGCTGACATTGTCCT--AACCCTG-CTTGAATTTGAAGCGCAAGTCGC-TTGACT-TAGGCGCGTTATGTTTACTGTTAGTGGAATGGTTGTTAGCTCAC-ACGATTGAATAGACGAGGCATATGTGGTGTA---TTTTAACAATGTTCTTACACTGGAAT-AAATCCGTTAGGCCTCAC-GCTCC--CCTTTGCCCTGCCTAAAATCTGGATGCA-TG-TGTC-ATC--GAGACTCTAA-GTTGGCA--ATATTAAGAT---TTTCTAGCATGGCATAGCATGCAT-ACTTAA-TTATGATATG-ATGGACG-GGTGAATGTA
gi|5 : --CTCCAAC--TTACGCACCTTT-G-GTT------------TAAAGA-AA---AACT-AGCAA--GAGTACTTCATTG--TGA-CTTTATTGGGA-----GAGTACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GGG-AGTATAAC-CTG-AATGTCA-ATGTACATGCCTATTTAT-----CCATC-C--CTCAAT--TA-TAAG-GGAACT-GGTAA---------TA-CATGGTTTA--CAT-G-G--TTT----GAT-A--CCTAG-TACTGGACAATTC-A--TTGAAATTTTAAA-TCTAGC-AAAGTAAGAAAG-GA-ACCTACAACTTAA-------------TACTAAAAAAT--TACTA-CTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCC-TCT-GC-ATAGTAT--TGC-CAACAAA--T--GATAA-C-GATACCAA-AA---T-AAACAC---CATTGAAGA-CGAATC-AAATAA-CGAGAC--CGCCTAGTT--CCCCTGTATTCT------AATAT-G-ACTG--GAAAGAGTTT----G--GCCCC--ACCAGCGTTAG-TGGTCAGTATC
gi|6 : gcTCCAACCTTGACGCACCTTT-G-GCTT--------C--TAAAGA-AA---AC-T-AGCAA--GAGTACTTCATTG--TGA-CTTTA-TTGGA-----GA-TACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GTG-GGTATAAC-C-G-AATGTCA-AT-TAC-TGCCTATTT---------ATC-CATCCCGTCAATT-AAAGCGGAACT-GGTAAACACT-GGTTA-CA------------TA-G--TTT----GATCA--CCTAG-TACTGG-CAATTC-AGTTGAT---TTTAAA-T---ACTAGA--CAAATAGATA-A-----AAAGAACCCATACAACTTAATACTAAAAAAAATTACTAGCTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCCGTCT-GC-ATAGTAT--TGC-CAACAAATGT--GA-AA-CGATAACCAATAA---CTAAACA--ACCATTGAAGA-CGAATTCAAA-AA-TAACGAACCGCCTAGTTTCCCCT-GTATTCT------AATAT-G-ACTGGAAAGAG-TTTA----G--GCCCCtat
gi|7 : AGATGCATTGAGGGCTCGCAC--TCAAGCACCTTGTGGGCTGAGAGAGTACATTAAAGA-AA---AA-T-AG-AA--G--TACT-CGT-GA--GA-TTTTGATTGGC-----TAGTATTTAGCCATCGGCTGC--ATAGACAAT-A-GAGCGG---AGC-C-----CCTCA-AT-TAC-TGCCTATTGGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTG-ACCCT-GGGCAGCA-GAATGC--GACCACG--TTT----GAAAT--CCT-G-TACTGGACAATTC-AT-TCA----TTTAAAGT---AC-AGAGTCAAATAG-AAGA-----GACAAAC-------------TGCTGAAG-----CACTAGCT-GTAAG--CCAAAATAGCTGCC-A--CGAG-ACTA--TG-C-TCTGGC-ATAGTCTG-GGCGCACC--AAGTAGGG-AA-CAATTACCCA-AAGGGC-AAA-GGTAACATGGAGGGCCAAATT-AAA-AA-TAA-----CGacc
gi|8 : tataaCATTGAG--CTCCAGCCTTTATACACTTTG--TGCTAAT--AG-AAAATAACGACAA---AA-T--TCAATCG--TACT-CAC-CGATGACTTTTAATCGGCATAGTTA-TACT-GGCCA-CAGCTGCT--TAAACAATAA-GAG-AG----GC-C-GAAGCATCACAT-TAC-TGCAGTTTTGGATTTTT-ATTGC--TTGGACAATG-CAAGGAGAACTAGGTGAGCCCTCGGGCA-CA-GA-TGCCACACCA-G--TTTGTGAGATCGTTCCT---TACTGAAAAATTA-A--T
gi|9 : tattaaagaAGATGTATTGAA--TTCCAAC--TCATGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AAGAAAA-A-AGCAAA-G--TACT-CTTCAAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-ACGAG-GG---AGTGT-G-A-CATCA-AT-TAC-TGCCTATTTGGG----C-ATC-A--CTTGACAATA-TAGGAGGAACT-GGTGAATCCT-GGGCA-CA-GATTCT--CACCA-G--TTT----GACCA--CCTAG-TACTGGACAATTCAA--TCA----TTTAAA-ttat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GATATTCCATTGTACTGATCGAAGCCATATATTGGAAGCATCATTGCC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 111 222222222222 22222 1 2222 11111 1 1 2222 2222222 222222 1111 11 2222 111 11111 33333333333333 444444 1 111 222 111 1 1111 1111 1 111111 2222 1 22222 111111 11111111 2222222 11 1 11 111 111 11 22222222 11 11 111 2222 11 1111 1111 11111 111 2222222 111 1 111 7777777777777777777777777777777 11 1111 1 2222 1 1 111 1 1 000000000000000000000000000000 1 11 3333333 1 111 111 11 1 11 1 1 1 111 1 1 11 1 11 2222 1 1 1
lowQualScore : 77 33 1 000 666666666666 5 888 5 5 00000 0 1 1111 5 0 22222 0 5 2 5 0 5 5 5 7 5 0000 5 888 5 2 5 5 5 0 2222222 5 777 1 00 5 22 5 5 5 5 555555 4 5 66 0000 1 66 6 5 5 11 7777 6 444 8 666 99 8 66666 1 99999999999999 666666 3 888 4 5 888 5 222 5 5 1 8888 6 9999 7 7 6 3 999999 6 4444 1 1 6 6 6 6 88 88888 99 6 999999 6 6 44444444 0000000 888 66 8 88 5 999 0 0 8 11 8 0 444 0 8 0 444 3 33 11111111 33 2 8 8 55 8 0 8 0 88 55 666 8 8 8 8 0000 8 11 0 8 3 8 8 0000 0 5555 1 0 11111 5 5 1 000 8888888 77 1 5 333 3 3 444 6 99 99 3 6 6 3 1 7777777777777777777777777777777 8 8 11 8 8 0 0 2222 8 0 8888 0 0 111 0 0 444444444444444444444444444444 0 3 33 4444444 55 0 000 777 2 33 3 3 0 33 5 0 0 333 3 0 0 1 0 0 8 8 11 0 6 0 8 6 11 8 0 8 66 1 0 4444 8 8 3 88 8 0 8 0 0
lowQualScore : .. .. . ... ............ . ... . . ..... . . .... . . ..... . . . . . . . . . . .... . ... . . . . . . ....... . ... . .. . .. . . . . ...... . . .. .... . .. . . . .. .... . ... . ... .. . ..... . .............. ...... . ... . . ... . ... . . . .... . .... . . . . ...... . .... . . . . . . .. ..... .. . ...... . . ........ ....... ... .. . .. . ... . . . .. . . ... . . . ... . .. ........ .. . . . .. . . . . .. .. ... . . . . .... . .. . . . . . .... . .... . . ..... . . . ... ....... .. . . ... . . ... . .. .. . . . . . ............................... . . .. . . . . .... . . .... . . ... . . .............................. . . .. ....... .. . ... ... . .. . . . .. . . . ... . . . . . . . . .. . . . . . .. . . . .. . . .... . . . .. . . . . .
lowQualScore : 99 88 0 666 888888888888 0 888 0 0 66666 0 1 5555 0 4 55555 0 0 5 0 7 7 0 7 1 7 1111 7 666 3 7 7 7 7 1 6666666 0 111 4 55 0 22 0 0 0 0 111111 5 0 99 6666 4 99 5 0 0 99 5555 7 000 0 444 00 0 77777 0 22222222222222 333333 3 444 0 7 333 7 999 7 7 4 3333 7 3333 3 3 7 3 222222 7 3333 5 3 7 3 7 7 33 33333 22 7 222222 7 7 33333333 1111111 333 00 0 88 0 222 8 8 0 00 0 8 888 8 0 8 000 2 22 22222222 22 5 0 0 66 0 8 0 8 88 88 888 0 0 0 0 0000 0 44 8 0 8 0 0 4444 1 0000 7 1 11111 7 7 0 000 9999999 99 7 7 111 6 8 000 7 22 22 7 7 7 5 0 5555555555555555555555555555555 0 0 44 0 0 8 8 6666 0 0 5555 0 0 000 0 0 888888888888888888888888888888 0 2 88 0000000 00 0 555 555 5 22 2 2 0 22 0 0 0 555 2 0 0 0 8 2 0 0 00 8 0 8 0 4 00 0 8 0 44 0 8 6666 0 0 8 88 0 6 0 0 0
consensus : AGATGCATTGAG--CTCCAAC--TCANGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTTAAA-T---AC-AGAGTCAAATAG-NA-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAAAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTG--AAAAT-TTTT----G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTTAGAG-ACACCTGG-ACAGAATTATCTATC-AAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAA-CA-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCAG-AACAAGT-AGC-CGCAATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATTGGATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
Reference ( family-5183 ) : AGATGCATTGAG--CTCCAAC--TCANGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTTAAA-T---AC-AGAGTCAAATAG-NA-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAAAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTG--AAAAT-TTTT----G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTTAGAG-ACACCTGG-ACAGAATTATCTATC-AAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAA-CA-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCAG-AACAAGT-AGC-CGCAATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATTGGATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|1 : AGATGCATTGAG--CTCCAAC--TCAAGCACCTTG-GTGCTAA---AT-ACAATAAAAG-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTGATTGCG-----TA--ACT-GGCCA-CGGCTGCTTATAAACAAT-AAGAG-GG---AGC-C-G-AGCATCA-AT-TAC-TGCC-ATTTGG-----C-ATC-C---TCGACTATAACAAGAGGAACT-GGTGAACCCT-GTGCA-CA-GATTGT--CACCA-G--TTT----GATCA--CC-AG-TACTGGACAATTC-A--TCA----TTATAA-T---AC-AGAGTCAAATAG-CA-A-----AACCAAC-------------TGCTGAA------CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CTGAG-ACTAATTGCC-TCT-GCGATAGTCTGCGGC-CACCCAGAATAGGCTAA-C-ATTAC-AA-AA---C-AAACGCTAACAT---GAG-CAAATT-AAA-AA-TAA-----CGCCAAGTT--CCTC-GAGCCAA------AATGT-G-ACTG--ATA----TTT----G--ACCCCCA-CCCACTTGAA-T-GTCTGTATCATTGA--CCGAATA-CT-TGGT-C-AAAAATTAGACCTCAACAATAAGAAC--A-GTACTAGG--TGA-TC-GAGTAGACAATTAAGTG---TCATAGACTT-CAAT-AT-TAGGAT-CTATGAAA-TGCAA-ATA-GAGAACATAAACTA-TGA-TAAGTGAA-CAATCAAGTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTT----ACCAGT-TTTAGAG-ACACCTGGGACAGAATTAT-TATC-AAGAA-G--CTCGCAATGCTTGTTGCAATCGT--AAAT-TA-AA-AAA-CATAGTAA---TT-------CCC--ATGCCGGAAAAGTTGGACCTT-TAAGGC-AAAGACATTT---TGT-TTAGTCTG-AT-GCAA--CTCCGGATAACCTAAT-GTTACCCCC-----CC-----CAC---------A------AACAAGTGAGCACGCAATGCCTTTGTGACTC-AA-TTCTAATTCT-T--CCATGGGCGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGTGTTGA-C-TA---GCCCTATGTTTACAGTTACT-GAAT-GTTGTTAGCTC-CAACGATT-GATA-ACGA-GCATATGTGGTGTAT-CTTCTAAC-ATG-TCTTAACCTGGAAT-AATCCCTTTCAGCCTCACTGC-CC--CCTTTGCCCTACCAAAAATCTGGATGCATTG-TGTCAATC--GAG-CTCTAATGTTGGCATCAAATTAAGA----TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|10 : AGATGCATTGAG--TTCCAGC--TTATACAC------TGCCAA---TG-AAAATAACGA-AA---AA-TTAGCAAA-G--TACT-CAC-CAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-TGGCTTCT-ATAAACAAT-AAGAG-GG---GGC-C-G-AGCATCA-AT-TAC-TGCATTTTTGGA----C-ATT-C--TT-GACAATA-CAAGAAGAACT-GGTGAAACCT-CGGCA-CA-GA-TGCA-CACCA-G--TTT----GATTA--CCTAG-TACTGAACAATTC-A--T
gi|11 : ttataaaA-ATA-AAAA--ATAAACTAATGACTAAATGAA-CTATT--TTC--TCACT-AT-GGCAA-CACC-TTGTCCGTTTTTGCCCCA-T-CTT-GAG-ACGTATGA-ACATAATAATCACTC-AAAAATG--CTTGCAATGCTTGTTGCAACT-T--ATATAC-----AAG-CA-AGTTA---TTG------TAC--ATGTC-AAAAAGT-GCATCTtta
gi|12 : taaatt--CTTGCAATTCTTGTTGCAATC-----AATAT--AT-AAG-CG-AGTTA---TTG------CCC--CTGTCAAATAGGT-GGACCTT-
gi|12 : gataGTGTTAATCCG-AT-GCAA--CTTGTGATA-CCCAAT-ATACTTCCC-----CC-----atcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacggtgttaatccgatgcaacttgtgatacccaatatacttccccc
gi|13 : gatacttgcaattcttgttgcaatcaatatataagcgagttattgcccctgtcaaataggtggaccttatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacgAATGCTTGTTGCAA-------AATGTACAA-AAA-TA-AGTTG---TTA------CTC--ATATCAGAAAGAT-GGACCTT---ATCCCAAAAACACATACCCGTGTCGACCT------------TCTGGATA-CCCTGT-GAAC-------------------------------GAAGTAACAAGT-AGC-CAC-ATGGCTGG-TCATTC-GAATTC---TTCT-GT-CCAAAG-CAGACTGA
gi|14 : TCAT-GC-CCGCCTTTTTCCCTGCC-AAAAGATGGATGCATGGCTGGCGCTCTAGAA-ATCT-A-GTTAGT------TTAAGGTAGATTACGGGCATGAAA-AG-AAGC-T--CTTAA-TTAT-AGATG-A
gi|15 : ctccattAGATGCATTGAG--CTCCAAC--TCAAGCACCTTG-GTGCTAA---AT-ACA-TAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGAC-----TA-TACT-GGCCA-CGG
gi|16 : tataaaaT-TTTG----G--ACCCCCAACCCACTTG------------------------AAT-------GT-C-AAAAATTAGACCTCAAGAATA-GCAC--A-GTACTAGG--CGAATC-GAGTAGACAATAAGGTG---TCATAGAC
gi|17 : -----AATAAA--------------TGCTGAA------CACTT-CTGGTAA-T-CTAAGAT--CTGCCTACCCGAACACTA---GCC-TTT-GC-
gi|2 : TATTGGG-----C-ATC-C--CTCGACA-TA-CAAGA--AAT---GTGAACCCT-GGGCA-CA-GATC-T--CAC-A-GAATTT----GATCA--CCTTGATACTTGACAATTC-A--TTAA---TTTAAA-T---AC-AA---CAAATA--CA-A-----AACAAAC-------------TGCTGAA------CACTA-CTGGTAACT-C-AAAATAG-TGCC-A-C-GAG-ACTA---GCC-TTT-GCTATATTCTGCG-C-CAC---AAGTAGGATAAAC-CTTACCAA------C-AAA---TAGCACTGAGGG-C-AATT-AAA-AA---A-----CGCCAA--T--TCCC-GAGCCAA------ATTAT-G-A-------AAT-TTTT----GGGACCCACAACCCACT-GAA-T-GTCAGTATCATTGAA-CC-AATA-CTGTGGTAT-AAAAAT-AGACCTCAACAATA-GAAC--A-ATAC-AGG----AATCCGATTA-ACAATAAGGTTATTTCATAGAACTTCAA--AT--AG--TACAATGAA--T-CGA-CTA-GAGA-AATAAA-TA-T-ACTAAG-GAA-CAA-CA-GTTAGTCA---AGTCGCAC-C-CACTGGCCCGATTT---AACAGT-TT-AGAGTACACCTGG-ACAGAATTATCTATC-AAAGA-A--CTCGCAATGCTTGTTGCAATC-TCTAAATATA-AATAAA-CA-A-TAA---TT-------TCC--ATGC-GAAAAAGT-GGACCTGGTAAGGCTAAAGACATTT---TGTGTTAGTTGGCAT--CAA--CTCGG-ATA-CCTAAT-GTACCCCCC-----CC-----CCCCCCCCCCCCA-GCA--AACAAGT-AGC-CGCA-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGAATTCCCCC--TACCAT-GCAGACGTGT-GCAAAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-T-GCTA--ATT------------T-CCTTAAATTTGAAGCGCAAGTCGC-TAGACT-TA---GCCCTATTGTTACTGTTACTGGAA--GT-GTTAGCTC-C--CGATTGGATA-ACGA-GCATATATAGTGCAT-CTTCTAACAATG-TCTTAACCTGGAAT-AAATCCCTTCAGCCTCAC-GC-CC--CC-TTGCCCTGCC-AAAATCTGGATGCATTG-TGTCAATC---AG-CT-TAA--TTGGCATCAAATT-AGA----TTTCTAGCATGGCA-AG-ATGCGCAACTTAAGTTATG-AATG-ATGGACG-GTTG-ATtaatt
gi|3 : TAAGTGCCAAAATAGCTGCC-A-C-GAG-ACTA--TGCC-TCT-GC-ATAGTCTGCG-C-CACCA---GTAGGGTAA-C-ATTACCAA-AAA--C-AAA-GCTAACAA-GAGGC-CAAGTT-AAA-AAATAA-----CGCCAAGTT--CCTC-GAGCCAAGAGCCAAATGTTG-ACTG--AATTT-TTTTTG--G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CT-TGGT-C-AAAAATTAGACCTCA-CAATA-GAAC--A-GTAATAGG--TGAATC-GAGTAGACAA-AAGGTG---TCATAGACTTTCAAT-ATATAG--T-CTATGAAAATGCAA-ATA-CAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTT--AG-ACACCTGG-ACAGAATTATCTATCAAAGAA-G--CTCGCAATGCTTGTTGCAATC-T--A---ATA-AA-AAACCA-AGTAA---TTAAATTCTCTC--ATGCCGGAAAAGT-GGACC-T-TATGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCAGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCA--AACAAGT-AGC-CGC-ATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--TCCCAT-GCAGACGTGGAAAAAA-T-TTGA-GTCC-AT--------ATCGGGGTTGTTGACGGTAC--CAGTG-TTGCTA--ATTG---CCTAACCCTGCCTTGAATTTGAAGCGCAAGTCGT-TTGACCTTA---GTCCTATGTTTACTGTTACTGGAAT-GTTG-TAGCTC-C-ACGATT-GATA-ACGA-GCATATGTGGTGTATATTTTTAACAATG-TCTTAACCTGGAATAAATCCCTTTTAGCCTCAC-G--TC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTGGCATGGCA-AG-ATGCAT-ACTTAA-TTATG-AATGAATGGACGCGTAG-ATGTAT
gi|4 : aaaattgtagctatCAAGTT--CCTC-GAGCCAA------AATGT-GTACTG--AAAAT-TTTTTTGGA--ACCGCCCACCCACTTGAAGT-GTCAGTATCATTGAAACC-AATAACTGTGGT-CGAAAAATTAGACCTCAACAATA-GAACCCACGTAATAGGGTTGAATC-GCGTAGACAATAAGGTG---TCATAGACTTTCAATGAT-T-G--T-CTATGAAA-TGCAATATAGGAGACAATAAACTC-TGACTAAGTGAAGCAATCA-GTCA-TCA-TGAG-CG-AGCC-CA-TGGCCCTTTTA---AACAGTATTTAG-G-AC-CCTGG-ACAGAAATATCTATC-AAGAA-GGCTTCGCAA-GCTTGTTGCAATC-T--AAATATA-GA-AAC-CA-AGGTATATTTT------CCCCGATGCTGG-AAAGT--GACCTT-T-AGGC--AAGACA-TT---TGTGTTAGTCTG-ATGGCAAATCTCAGGATA--CTAATCGT-CCCCCCTGACACCAGTGTCTC---------ACGCAGCAACAAGT-A-C-AGCAATGCCTGT-TGACTCTAAATTCTAATTCTGTTACCATGG-CGGCTTGATTGA-TTCCCCCCTC-CCATGGCAGACGTGG-ACAAA-TATTGACGTCCTATCGTTTGTGA------------------CGACAGTGTTTGCTGACATTGTCCT--AACCCTG-CTTGAATTTGAAGCGCAAGTCGC-TTGACT-TAGGCGCGTTATGTTTACTGTTAGTGGAATGGTTGTTAGCTCAC-ACGATTGAATAGACGAGGCATATGTGGTGTA---TTTTAACAATGTTCTTACACTGGAAT-AAATCCGTTAGGCCTCAC-GCTCC--CCTTTGCCCTGCCTAAAATCTGGATGCA-TG-TGTC-ATC--GAGACTCTAA-GTTGGCA--ATATTAAGAT---TTTCTAGCATGGCATAGCATGCAT-ACTTAA-TTATGATATG-ATGGACG-GGTGAATGTA
gi|5 : --CTCCAAC--TTACGCACCTTT-G-GTT------------TAAAGA-AA---AACT-AGCAA--GAGTACTTCATTG--TGA-CTTTATTGGGA-----GAGTACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GGG-AGTATAAC-CTG-AATGTCA-ATGTACATGCCTATTTAT-----CCATC-C--CTCAAT--TA-TAAG-GGAACT-GGTAA---------TA-CATGGTTTA--CAT-G-G--TTT----GAT-A--CCTAG-TACTGGACAATTC-A--TTGAAATTTTAAA-TCTAGC-AAAGTAAGAAAG-GA-ACCTACAACTTAA-------------TACTAAAAAAT--TACTA-CTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCC-TCT-GC-ATAGTAT--TGC-CAACAAA--T--GATAA-C-GATACCAA-AA---T-AAACAC---CATTGAAGA-CGAATC-AAATAA-CGAGAC--CGCCTAGTT--CCCCTGTATTCT------AATAT-G-ACTG--GAAAGAGTTT----G--GCCCC--ACCAGCGTTAG-TGGTCAGTATC
gi|6 : gcTCCAACCTTGACGCACCTTT-G-GCTT--------C--TAAAGA-AA---AC-T-AGCAA--GAGTACTTCATTG--TGA-CTTTA-TTGGA-----GA-TACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GTG-GGTATAAC-C-G-AATGTCA-AT-TAC-TGCCTATTT---------ATC-CATCCCGTCAATT-AAAGCGGAACT-GGTAAACACT-GGTTA-CA------------TA-G--TTT----GATCA--CCTAG-TACTGG-CAATTC-AGTTGAT---TTTAAA-T---ACTAGA--CAAATAGATA-A-----AAAGAACCCATACAACTTAATACTAAAAAAAATTACTAGCTGGTGAG--CTAAAATAGCTGCC-A--TGAG-ATTA--TGCCGTCT-GC-ATAGTAT--TGC-CAACAAATGT--GA-AA-CGATAACCAATAA---CTAAACA--ACCATTGAAGA-CGAATTCAAA-AA-TAACGAACCGCCTAGTTTCCCCT-GTATTCT------AATAT-G-ACTGGAAAGAG-TTTA----G--GCCCCtat
gi|7 : AGATGCATTGAGGGCTCGCAC--TCAAGCACCTTGTGGGCTGAGAGAGTACATTAAAGA-AA---AA-T-AG-AA--G--TACT-CGT-GA--GA-TTTTGATTGGC-----TAGTATTTAGCCATCGGCTGC--ATAGACAAT-A-GAGCGG---AGC-C-----CCTCA-AT-TAC-TGCCTATTGGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTG-ACCCT-GGGCAGCA-GAATGC--GACCACG--TTT----GAAAT--CCT-G-TACTGGACAATTC-AT-TCA----TTTAAAGT---AC-AGAGTCAAATAG-AAGA-----GACAAAC-------------TGCTGAAG-----CACTAGCT-GTAAG--CCAAAATAGCTGCC-A--CGAG-ACTA--TG-C-TCTGGC-ATAGTCTG-GGCGCACC--AAGTAGGG-AA-CAATTACCCA-AAGGGC-AAA-GGTAACATGGAGGGCCAAATT-AAA-AA-TAA-----CGacc
gi|8 : tataaCATTGAG--CTCCAGCCTTTATACACTTTG--TGCTAAT--AG-AAAATAACGACAA---AA-T--TCAATCG--TACT-CAC-CGATGACTTTTAATCGGCATAGTTA-TACT-GGCCA-CAGCTGCT--TAAACAATAA-GAG-AG----GC-C-GAAGCATCACAT-TAC-TGCAGTTTTGGATTTTT-ATTGC--TTGGACAATG-CAAGGAGAACTAGGTGAGCCCTCGGGCA-CA-GA-TGCCACACCA-G--TTTGTGAGATCGTTCCT---TACTGAAAAATTA-A--T
gi|9 : tattaaagaAGATGTATTGAA--TTCCAAC--TCATGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AAGAAAA-A-AGCAAA-G--TACT-CTTCAAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-ACGAG-GG---AGTGT-G-A-CATCA-AT-TAC-TGCCTATTTGGG----C-ATC-A--CTTGACAATA-TAGGAGGAACT-GGTGAATCCT-GGGCA-CA-GATTCT--CACCA-G--TTT----GACCA--CCTAG-TACTGGACAATTCAA--TCA----TTTAAA-ttat
blockSeqs : GG CT T TGG GAGAGAGTACAT C GAA C T GAG T A CAAA C ATAGT G T G T . A A A C TATA G TG G A C G A ATTTTT G ATC C . AA A C G T TGCCA C C AA GTGA T TT A A A GT AAAT G CTA T AGT AT G CCTAC A CCCATACAACTTAA AAAAAT G GTG T T CCC C T G G T GCG G AAAT A T A G AAGGG T GCT G T C A C T AT CGAAC TC T GAGCCA T T GAAAGAG TTGGA GT AA . AA G AT . CC C GTT C ATT T TG ATAGT AA G T G CA A G A AG CT T C A C TTGC A TA T G . A GGC TCT T ACAA C . T TAT AAATTCT CG A . GTA C C ACC C GG AT G . C A T TGACACCAGTGTCTCACGCAGC . . AA . T GTTA . A CTC G A AT C T ATCGGGGTTGTTGACGGTAC T T AC GTCCT GC . CCT GGC G TG T T A A G G G TAT A T A A . T GC T C G TA A . AT A TAGA T C G AA G A A C A
blockSeqs : . CT A GT AATAGAAAA . . . . GAG T G CAA . . G . G . . A . C . TATA . GA A G . . . AC . T C . CG . . . . TGCA T . . . C . T . . T A . . . AGT C . . A C AAAT G CT C . C . T . . . GCG . AAA A T . A AAA . CAC A T . G . . C GAC . . . . . GAAAGA GGG TG AA . A G CG . . . C . . T T AGTA A G . . CA . . A AG TG . . . . T . T . A . . TG T A AAAT . . T . G . A . TA T T . . G . T . . A C CCCCCCCCCCCCCCAGCA . . A . . GT . . TA . . TA . . CGTTTGTGACGA . T . GCCT C . CT . G T T T . A G . . TC A . . T . . . . . A . . . AT A T . . A A . A . . .
blockSeqs : . . C GT AATGAAAA . . . . TCG . A GAA . . . . G . . A . . . G . G A G . . . CC . C C . AG . . . . TTTA C . . . C . A . . . T . . . A G . . T A G . T T . C . T . . . GGG . AA A T . . TAA . GGT C T . G . . T . . . . . . AATTT TGG T A . A . C . . . T . . T . TGT . . . . A . . A A T . . . . T . A . A . . A T A AAA . . T . G . G . T T T . . G . G . . A C CCCCCAGCA . . A . . TT . . TC . . T . . AC . . . . G . CT . G . . . . . . . . . A . . A . . . . . G . . . A T T . . A A . . . . .
blockSeqs : . . C T AAAGACAA . . . . AG . A CGA . . . . G . . A . . . A . G G C . . . GC . C C . GA . . . . ATGC C . . . A . A . . . . . . . . A . . G C . . G T . T . T . . . TG . AA . . . . AA . CA A G . A . . T . . . . . . AAAAT G T . . . . C . . . . . . . . . . . . . . . . . . A . T . . . . G T A AGA . . A . A . G . . . . . . . . A . . A C GAAGT . . A . . TT . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . A G AAATACA . . . . AG . G TG . . . . G . . . . . . A . G . A . . . C . C G . AG . . . . TTCT C . . . C . A . . . . . . A . . . G C . T . . . . . TG . A . . . . . . T . . . . . . . . . . . . . AAT G . . A AT . . A . T . G . . . . A . . . .
blockSeqs : . . T G TC . . . . G . A TG . . . . . . . . . . . . . . . A . . . C . T T . A . . . . TCT . . . . C . . . . . G . . C . . . . . G . . . . . T . . . . .
blockSeqs : . T T . . . . . G . T GA . . . . . . . . C . . G . . . . . . . . . . . . . . .
blockSeqCons : N** AG*** CGA* C****** C** A*** G** C** T** GCG* AA** AAA*** GNT* GAAAN*** T** A* A* T** T*** T* T*** AAA** G****** CCCCCAGCAGC******************** A* TT** T***
originalCons : AGATGCATTGAG--CTCCAAC--TCANGCACCTTG-GTGCTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA--G--TACT-CGT-GAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCA----TTTAAA-T---AC-AGAGTCAAATAG-NA-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAGT-CCAAAATAGCTGCC-A-CCGAG-ACTA--TGCC-TCT-GC-ATAGTCTGCGGC-CACCAAAAGTAGGATAA-C-ATTACCAA-AA---C-AAACGCTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTG--AAAAT-TTTT----G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTTAGAG-ACACCTGG-ACAGAATTATCTATC-AAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAA-CA-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCAG-AACAAGT-AGC-CGCAATGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATTGGATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
finalCons : AGATGCATTGAG--CTCCAAC--TCANGCACCTTGN--GCTAA---AG-ACAATAAAGA-AA---AA-T-AGCAAAG---TACT-CGTCGA-TGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGGC------ATC-CC--TCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCAA---TTTAAA-T---AC-AGAGTCAAATAG-NA-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAG--CCAAAATAGCTGCC-AC--GAG-ACTAT--GCC-TCT-GC-ATAGTCTGCG-C-CACCAA--GTAGGATAA-C-ATTACCAAAAA---C-AAAGNT-AACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTGGAAAN---TTTT----G--ACCCCCAACCCACTTGAAT--GTCAGTATCATTGAA-CC-AATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCAT--AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTT-GAG-ACACCTGG-ACAGAATTATCTATC-AAGAA-G--CTCGCAATGCTTGTTGCAATCT---AAATATAAA--AAA-CA-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GTACCCCCCCCCCCAGCAGC--------------------AACAAGT-AGC-CGCA-TGCCTGT-TGACTC-AAATTCTAATTCTTT--CCATGG-CGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATTGGATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GATATTCCATTGTACTGATCGAAGCCATATATTGGAAGCATCATTGCC
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11 11 222222222222 22 1 1111 11111 1 1 2222 2222222 222222 1111 222222222 111 11111 33333333333333 444444 1 111 1 1 222 1 22222 111111 22222 2222222 11 1 111 11 111 111 11 22222222 11 11 111 2222 11 1111 1111 11111 111 2222222 111 1 111 6666666666666666666666666666666 1111 1 2222 1 1 111 1 1 000000000000000000000000000000 1 11 3333333 1 111 111 11 1 11 1 1 1 111 1 1 11 1 11 2222 1 1 1
lowQualScore : 77 33 1 66 66 666666666666 5 888 5 5 11 0 1 2222 5 0 22222 0 5 2 5 0 5 5 5 7 5 0000 5 888 5 2 5 5 5 0 2222222 5 777 1 00 5 22 5 5 5 5 555555 4 5 66 0000 1 66 6 5 5 000000000 5 6 444 8 666 99 8 66666 1 99999999999999 666666 3 5 5 8888 5 222 5 5 1 6 6 6 99 1 7 6 3 7 3 99 111 1 1 6 6 6 6 88 88888 99 6 999999 6 6 00000 77 4444444 6 6 3 66 8 5 444 0 0 8 11 8 0 444 0 8 0 444 3 33 11111111 33 2 8 8 55 8 0 8 0 88 55 666 8 8 8 8 0000 8 11 8 3 8 8 0000 0 5555 1 0 11111 5 5 1 000 8888888 77 1 5 333 3 3 444 6 99 99 3 6 6 3 1 9999999999999999999999999999999 8 8 8 8 8 8 0 0 2222 8 0 8888 0 0 111 0 0 444444444444444444444444444444 0 3 33 4444444 55 0 000 777 2 33 3 3 0 33 5 0 0 333 3 0 0 1 0 0 8 8 11 0 6 0 8 6 11 8 0 8 66 1 0 4444 8 8 3 88 8 0 8 0 0
lowQualScore : .. .. . .. .. ............ . ... . . .. . . .... . . ..... . . . . . . . . . . .... . ... . . . . . . ....... . ... . .. . .. . . . . ...... . . .. .... . .. . . . ......... . . ... . ... .. . ..... . .............. ...... . . . .... . ... . . . . . . .. . . . . . . .. ... . . . . . . .. ..... .. . ...... . . ..... .. ....... . . . .. . . ... . . . .. . . ... . . . ... . .. ........ .. . . . .. . . . . .. .. ... . . . . .... . .. . . . . .... . .... . . ..... . . . ... ....... .. . . ... . . ... . .. .. . . . . . ............................... . . . . . . . . .... . . .... . . ... . . .............................. . . .. ....... .. . ... ... . .. . . . .. . . . ... . . . . . . . . .. . . . . . .. . . . .. . . .... . . . .. . . . . .
lowQualScore : 99 88 0 00 99 888888888888 0 888 0 0 22 0 1 8888 0 4 55555 0 0 5 0 7 7 0 7 1 7 1111 7 666 3 7 7 7 7 1 6666666 0 111 4 55 0 22 0 0 0 0 111111 5 0 99 6666 4 99 5 0 0 222222222 7 7 000 0 444 00 0 77777 0 22222222222222 333333 3 7 7 1111 7 999 7 7 4 7 7 7 22 7 3 7 3 2 5 22 777 5 3 7 3 7 7 33 33333 22 7 222222 7 7 77777 77 4444444 7 7 5 66 0 0 222 8 8 0 00 0 8 888 8 0 8 000 2 22 22222222 22 5 0 0 66 0 8 0 8 88 88 888 0 0 0 0 0000 0 22 0 8 0 0 4444 1 0000 7 1 11111 7 7 0 000 9999999 99 7 7 111 6 8 000 7 22 22 7 7 7 5 0 7777777777777777777777777777777 0 0 0 0 0 0 8 8 6666 0 0 5555 0 0 000 0 0 888888888888888888888888888888 0 2 88 0000000 00 0 555 555 5 22 2 2 0 22 0 0 0 555 2 0 0 0 8 2 0 0 00 8 0 8 0 4 00 0 8 0 44 0 8 6666 0 0 8 88 0 6 0 0 0
consensus : AGATGCATTGAG--CTCCAAC--TCANGCACCTTGGTG--CTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA-AGTACT-CGTCGA-TGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TTAA---TTTA-AA-T---AC-AGAGTCAAATAGN-A-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAG-CCAAAATAGCTGCC-A--C-GAG-ACTA--TGCC-TCT-GC-ATAGTCTGCG-C-CACCAAG--TAGGATAA-C-ATTACCAAAA--ACAAA-GCTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTGGAA--A-TTTTT----G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACCAATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTT-GAG-ACACCTGG-ACAGAATTATCTATC-AAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAA-CA-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCAG-AACAAGT-AGC-CGC-A-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATTGGATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
Reference ( family-5183 ) : AGATGCATTGAG--CTCCAAC--TCANGCACCTTGN-G--CTAA---AG-ACAATAAAGA-AA---AA-T-AGCAA-AGTACT-CGTCGA-TGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-A-GAG-GG---AGC-C-G-AGCGTCA-AT-TAC-TGCCTATTTGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTGAACCCT-GGGCA-CA-GATTGC--CACCA-G--TTT----GATCA--CCTAG-TACTGGACAATTC-A--TCAA---TTTA-AA-T---AC-AGAGTCAAATAGN-A-A-----AACNAAC-------------TGCTGAAA-----CACTA-CTGGTAAG-CCAAAATAGCTGCC-A--C-GAG-ACTA--TGCC-TCT-GC-ATAGTCTGCG-C-CACCAAG--TAGGATAA-C-ATTACCAAAA--ACAAA-GNTAACATTGAGGG-CGAATT-AAA-AA-TAA-----CGCCAAGTT--CCCC-GAGCCAA------AATGT-G-ACTGGAA--A-NTTTT----G--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAA-CCAATA-CTGTGGT-C-AAAAATTAGACCTCAACAATA-GAAC--A-GTACTAGG--TGAATC-GAGTAGACAATAAGGTG---TCATAGACTTTCAAT-AT-TAG--T-CTATGAAA-TGCAA-ATA-GAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTT-GAG-ACACCTGG-ACAGAATTATCTATC-AAGAA-G--CTCGCAATGCTTGTTGCAATC-T--AAATATA-AA-AAA-CA-AGTNA---TTG------CCC--ATGCCGGAAAAGT-GGACCTT-TAAGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCGGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCAGCAACAAGT-AGC-CGC-A-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGC-TTGACC-TA---GCCCTATGTTTACTGTTACTGGAAT-GTTGTTAGCTC-C-ACGATTGGATA-ACGA-GCATATGTGGTGTAT-CTTCTAACAATG-TCTTAACCTGGAAT-AANCCCTTTCAGCCTCAC-GC-CC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|1 : AGATGCATTGAG--CTCCAAC--TCAAGCACCTTGGTG--CTAA---AT-ACAATAAAAG-AA---AA-T-AGCAA--GTACT-CGTGAA-TGA-TTTTGATTGCG-----TA--ACT-GGCCA-CGGCTGCTTATAAACAAT-AAGAG-GG---AGC-C-G-AGCATCA-AT-TAC-TGCC-ATTTGG-----C-ATC-C---TCGACTATAACAAGAGGAACT-GGTGAACCCT-GTGCA-CA-GATTGT--CACCA-G--TTT----GATCA--CC-AG-TACTGGACAATTC-A--TCA-----TTATAA-T---AC-AGAGTCAAATAGC-A-A-----AACCAAC-------------TGCTGAA------CACTA-CTGGTAAGTCCAAAATAGCTGCC-A--CTGAG-ACTAATTGCC-TCT-GCGATAGTCTGCGGC-CACCCAGAATAGGCTAA-C-ATTAC--AAA--ACAAACGCTAACAT---GAG-CAAATT-AAA-AA-TAA-----CGCCAAGTT--CCTC-GAGCCAA------AATGT-G-ACTG-----A-TATTT----G--ACCCCCA-CCCACTTGAA-T-GTCTGTATCATTGAC-CGAATA-CT-TGGT-C-AAAAATTAGACCTCAACAATAAGAAC--A-GTACTAGG--TGA-TC-GAGTAGACAATTAAGTG---TCATAGACTT-CAAT-AT-TAGGAT-CTATGAAA-TGCAA-ATA-GAGAACATAAACTA-TGA-TAAGTGAA-CAATCAAGTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTT----ACCAGT-TTTAGAG-ACACCTGGGACAGAATTAT-TATC-AAGAA-G--CTCGCAATGCTTGTTGCAATCGT--AAAT-TA-AA-AAA-CATAGTAA---TT-------CCC--ATGCCGGAAAAGTTGGACCTT-TAAGGC-AAAGACATTT---TGT-TTAGTCTG-AT-GCAA--CTCCGGATAACCTAAT-GTTACCCCC-----CC-----CAC---------A------AACAAGTGAGCACGC-AATGCCTTTGTGACTC-AA-TTCTAATTCT-T--CCATGGGCGGCTTGATTGA-TTCCCCC--T-CCAT-GCAGACGTGG-ACAAA-T-TTGA-GTCC-AT--------A------------------C--CAGTG-TTGCTA--ATTG---C--AACCCTGCCTTGAATTTGAAGCGCAAGTCGTGTTGA-C-TA---GCCCTATGTTTACAGTTACT-GAAT-GTTGTTAGCTC-CAACGATT-GATA-ACGA-GCATATGTGGTGTAT-CTTCTAAC-ATG-TCTTAACCTGGAAT-AATCCCTTTCAGCCTCACTGC-CC--CCTTTGCCCTACCAAAAATCTGGATGCATTG-TGTCAATC--GAG-CTCTAATGTTGGCATCAAATTAAGA----TTTCTAGCATGGCA-AG-ATGCAT-ACTTAA-TTATGAAATG-ATGGACG-GTTG-ATGTAT
gi|10 : AGATGCATTGAG--TTCCAGC--TTATACAC----T-G--CCAA---TG-AAAATAACGA-AA---AA-TTAGCAA-AGTACT-CACCAA-TGA-TTTTAATTGGC-----TA-TACT-GGCCA-TGGCTTCT-ATAAACAAT-AAGAG-GG---GGC-C-G-AGCATCA-AT-TAC-TGCATTTTTGGA----C-ATT-C--TT-GACAATA-CAAGAAGAACT-GGTGAAACCT-CGGCA-CA-GA-TGCA-CACCA-G--TTT----GATTA--CCTAG-TACTGAACAATTC-A--T
gi|11 : ttataaaA-ATA-AAAA--ATAAACTAATGACTAAATGAA-CTATT--TTC--TCACT-AT-GGCAA-CACC-TTGTCCGTTTTTGCCCCA-T-CTT-GAG-ACGTATGA-ACATAATAATCACTC-AAAAATG--CTTGCAATGCTTGTTGCAACT-T--ATATAC-----AAG-CA-AGTTA---TTG------TAC--ATGTC-AAAAAGT-GCATCTtta
gi|12 : taaatt--CTTGCAATTCTTGTTGCAATC-----AATAT--AT-AAG-CG-AGTTA---TTG------CCC--CTGTCAAATAGGT-GGACCTT-
gi|12 : gataGTGTTAATCCG-AT-GCAA--CTTGTGATA-CCCAAT-ATACTTCCC-----CC-----atcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacggtgttaatccgatgcaacttgtgatacccaatatacttccccc
gi|13 : gatacttgcaattcttgttgcaatcaatatataagcgagttattgcccctgtcaaataggtggaccttatcgcacaaaaaaaaaaccaaccaaaatacaaaaagaaaaaaaccaagtccgtgtaacgAATGCTTGTTGCAA-------AATGTACAA-AAA-TA-AGTTG---TTA------CTC--ATATCAGAAAGAT-GGACCTT---ATCCCAAAAACACATACCCGTGTCGACCT------------TCTGGATA-CCCTGT-GAAC-------------------------------GAAGTAACAAGT-AGC-CAC-A-TGGCTGG-TCATTC-GAATTC---TTCT-GT-CCAAAG-CAGACTGA
gi|14 : TCAT-GC-CCGCCTTTTTCCCTGCC-AAAAGATGGATGCATGGCTGGCGCTCTAGAA-ATCT-A-GTTAGT------TTAAGGTAGATTACGGGCATGAAA-AG-AAGC-T--CTTAA-TTAT-AGATG-A
gi|15 : ctccattAGATGCATTGAG--CTCCAAC--TCAAGCACCTTGGTG--CTAA---AT-ACA-TAAAGA-AA---AA-T-AGCAA--GTACT-CGTGAA-TGA-TTTTAATTGAC-----TA-TACT-GGCCA-CGG
gi|16 : tataaaaTTTG----G--ACCCCCAACCCACTTGAA-T-GTC------------------------------AAAAATTAGACCTCAAGAATA-GCAC--A-GTACTAGG--CGAATC-GAGTAGACAATAAGGTG---TCATAGAC
gi|17 : t-----AATAAA--------------TGCTGAA------CACTT-CTGGTAAT-CTAAGAT--CTGCCTACCC-GAACACTA---GCC-TTT-GC-
gi|2 : TATTGGG-----C-ATC-C--CTCGACA-TA-CAAGA--AAT---GTGAACCCT-GGGCA-CA-GATC-T--CAC-A-GAATTT----GATCA--CCTTGATACTTGACAATTC-A--TTAA---TTTA-AA-T---AC-AA---CAAATA-C-A-A-----AACAAAC-------------TGCTGAA------CACTA-CTGGTAAC-TCAAAATAG-TGCC-A--C-GAG-ACTA---GCC-TTT-GCTATATTCTGCG-C-CAC-AAG--TAGGATAAAC-CTTACCAA-----CAAA---TAGCACTGAGGG-C-AATT-AAA-AA---A-----CGCCAA--T--TCCC-GAGCCAA------ATTAT-G-A-----A--A-TTTTT----GGGACCCACAACCCACT-GAA-T-GTCAGTATCATTGAA-CCAATA-CTGTGGTAT-AAAAAT-AGACCTCAACAATA-GAAC--A-ATAC-AGG----AATCCGATTA-ACAATAAGGTTATTTCATAGAACTTCAA--AT--AG--TACAATGAA--T-CGA-CTA-GAGA-AATAAA-TA-T-ACTAAG-GAA-CAA-CA-GTTAGTCA---AGTCGCAC-C-CACTGGCCCGATTT---AACAGT-TTA-GAGTACACCTGG-ACAGAATTATCTATC-AAAGA-A--CTCGCAATGCTTGTTGCAATC-TCTAAATATA-AATAAA-CA-A-TAA---TT-------TCC--ATGC-GAAAAAGT-GGACCTGGTAAGGCTAAAGACATTT---TGTGTTAGTTGGCAT--CAA--CTCGG-ATA-CCTAAT-GTACCCCCC-----CC-----CCCCCCCCCCCCA-GCA--AACAAGT-AGC-CGC-A-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGAATTCCCCC--TACCAT-GCAGACGTGT-GCAAAAT-TTGA-GTCC-AT--------A------------------C--CAGTG-T-GCTA--ATT------------T-CCTTAAATTTGAAGCGCAAGTCGC-TAGACT-TA---GCCCTATTGTTACTGTTACTGGAA--GT-GTTAGCTC-C--CGATTGGATA-ACGA-GCATATATAGTGCAT-CTTCTAACAATG-TCTTAACCTGGAAT-AAATCCCTTCAGCCTCAC-GC-CC--CC-TTGCCCTGCC-AAAATCTGGATGCATTG-TGTCAATC---AG-CT-TAA--TTGGCATCAAATT-AGA----TTTCTAGCATGGCA-AG-ATGCGCAACTTAAGTTATG-AATG-ATGGACG-GTTG-ATtaatt
gi|3 : G-CCAAAATAGCTGCC-A--C-GAG-ACTA--TGCC-TCT-GC-ATAGTCTGCG-C-CACCA-G--TAGGGTAA-C-ATTACCAAAA--ACAAA-GCTAACAA-GAGGC-CAAGTT-AAA-AAATAA-----CGCCAAGTT--CCTC-GAGCCAAGAGCCAAATGTTG-ACTG--A--A-TTTTTTTTGG--ACCCCCAACCCACTTGAA-T-GTCAGTATCATTGAAACCAATA-CT-TGGT-C-AAAAATTAGACCTCA-CAATA-GAAC--A-GTAATAGG--TGAATC-GAGTAGACAA-AAGGTG---TCATAGACTTTCAAT-ATATAG--T-CTATGAAAATGCAA-ATA-CAGACAATAAACTA-TGACTAAGTGAA-CAATCA-GTCAGTCA-T-AG-CGCAG-C-CA-TGGCCCGTTTT---ACCAGT-TTT--AG-ACACCTGG-ACAGAATTATCTATCAAAGAA-G--CTCGCAATGCTTGTTGCAATC-T--A---ATA-AA-AAACCA-AGTAA---TTAAATTCTCTC--ATGCCGGAAAAGT-GGACC-T-TATGGCTAAAGACATTT---TGTGTTAGTCTG-AT-GCAA--CTCAGGATA-CCTAAT-GTACCCCCC-----CC-----CCC---------A-GCA--AACAAGT-AGC-CGC-A-TGCCTGT-TGACTC-AAATTCTAATTCT-TT-CCATGG-CGGCTTGATTGA-TTCCCCC--TCCCAT-GCAGACGTGGAAAAAA-T-TTGA-GTCC-AT--------ATCGGGGTTGTTGACGGTAC--CAGTG-TTGCTA--ATTG---CCTAACCCTGCCTTGAATTTGAAGCGCAAGTCGT-TTGACCTTA---GTCCTATGTTTACTGTTACTGGAAT-GTTG-TAGCTC-C-ACGATT-GATA-ACGA-GCATATGTGGTGTATATTTTTAACAATG-TCTTAACCTGGAATAAATCCCTTTTAGCCTCAC-G--TC--CCTTTGCCCTGCC-AAAATCTGGATGCATTG-TGTCGATC--GAG-CTCTAA-GTTGGCATCAAATTAAGAT---TTTCTGGCATGGCA-AG-ATGCAT-ACTTAA-TTATG-AATGAATGGACGCGTAG-ATGTAT
gi|4 : aaaattgtagctattaagtCAAGTT--CCTC-GAGCCAA------AATGT-GTACTGAAA--A-TTTTTTTGGA--ACCGCCCACCCACTTGAAGT-GTCAGTATCATTGAAACCAATAACTGTGGT-CGAAAAATTAGACCTCAACAATA-GAACCCACGTAATAGGGTTGAATC-GCGTAGACAATAAGGTG---TCATAGACTTTCAATGAT-T-G--T-CTATGAAA-TGCAATATAGGAGACAATAAACTC-TGACTAAGTGAAGCAATCA-GTCA-TCA-TGAG-CG-AGCC-CA-TGGCCCTTTTA---AACAGTATTT-AGG-AC-CCTGG-ACAGAAATATCTATC-AAGAA-GGCTTCGCAA-GCTTGTTGCAATC-T--AAATATA-GA-AAC-CA-AGGTATATTTT------CCCCGATGCTGG-AAAGT--GACCTT-T-AGGC--AAGACA-TT---TGTGTTAGTCTG-ATGGCAAATCTCAGGATA--CTAATCGT-CCCCCCTGACACCAGTGTCTC---------ACGCAGCAACAAGT-A-C-AGCAA-TGCCTGT-TGACTCTAAATTCTAATTCTGTTACCATGG-CGGCTTGATTGA-TTCCCCCCTC-CCATGGCAGACGTGG-ACAAA-TATTGACGTCCTATCGTTTGTGA------------------CGACAGTGTTTGCTGACATTGTCCT--AACCCTG-CTTGAATTTGAAGCGCAAGTCGC-TTGACT-TAGGCGCGTTATGTTTACTGTTAGTGGAATGGTTGTTAGCTCAC-ACGATTGAATAGACGAGGCATATGTGGTGTA---TTTTAACAATGTTCTTACACTGGAAT-AAATCCGTTAGGCCTCAC-GCTCC--CCTTTGCCCTGCCTAAAATCTGGATGCA-TG-TGTC-ATC--GAGACTCTAA-GTTGGCA--ATATTAAGAT---TTTCTAGCATGGCATAGCATGCAT-ACTTAA-TTATGATATG-ATGGACG-GGTGAATGTA
gi|5 : --CTCCAAC--TTACGCACCTTTG-G--TT------------TAAAGA-AA---AACT-AGCAAGAGTACTTCATTG--TGA-CTTTATTGGGA-----GAGTACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GGG-AGTATAAC-CTG-AATGTCA-ATGTACATGCCTATTTAT-----CCATC-C--CTCAAT--TA-TAAG-GGAACT-GGTAA---------TA-CATGGTTTA--CAT-G-G--TTT----GAT-A--CCTAG-TACTGGACAATTC-A--TTGAAATTTTA-AA-TCTAGC-AAAGTAAGAAAGG-A-ACCTACAACTTAA-------------TACTAAAAAAT--TACTA-CTGGTGAG-CTAAAATAGCTGCC-A--T-GAG-ATTA--TGCC-TCT-GC-ATAGTAT-TG-C-CAACAAA--T--GATAA-C-GATACC-AAA--ATAAA---CACCATTGAAGA-CGAATC-AAATAA-CGAGAC--CGCCTAGTT--CCCCTGTATTCT------AATAT-G-ACTGGAA--AGAGTTT----G--GCCCC--ACCAGCGTTAG-TGGTCAGTATC
gi|6 : gcTCCAACCTTGACGCACCTTTG-G--CTT--------C--TAAAGA-AA---AC-T-AGCAAGAGTACTTCATTG--TGA-CTTTA-TTGGA-----GA-TACT-G-CCA-CGGCTTCT-ATAA-CAAT-A-GTG-GGTATAAC-C-G-AATGTCA-AT-TAC-TGCCTATTT---------ATC-CATCCCGTCAATT-AAAGCGGAACT-GGTAAACACT-GGTTA-CA------------TA-G--TTT----GATCA--CCTAG-TACTGG-CAATTC-AGTTGAT---TTTA-AA-T---ACTAGA--CAAATAGATA-A-----AAAGAACCCATACAACTTAATACTAAAAAAAATTACTAGCTGGTGAG-CTAAAATAGCTGCC-A--T-GAG-ATTA--TGCCGTCT-GC-ATAGTAT-TG-C-CAACAAA--TGTGA-AA-CGATAACCAATA--ACTAA-ACAACCATTGAAGA-CGAATTCAAA-AA-TAACGAACCGCCTAGTTTCCCCT-GTATTCT------AATAT-G-ACTGGAAAGA-GTTTA----G--GCCCCtat
gi|7 : AGATGCATTGAGGGCTCGCAC--TCAAGCACCTTGT-GGGCTGAGAGAGTACATTAAAGA-AA---AA-T-AG--A-AGTACT-CGT-GA--GA-TTTTGATTGGC-----TAGTATTTAGCCATCGGCTGC--ATAGACAAT-A-GAGCGG---AGC-C-----CCTCA-AT-TAC-TGCCTATTGGG-----C-ATC-C--CTCGACAATA-CAAGAGGAACT-GGTG-ACCCT-GGGCAGCA-GAATGC--GACCACG--TTT----GAAAT--CCT-G-TACTGGACAATTC-A--TTCA---TTTA-AAGT---AC-AGAGTCAAATAGA-AGA-----GACAAAC-------------TGCTGAAG-----CACTAGCT-GTAAG-CCAAAATAGCTGCC-A--C-GAG-ACTA--TG-C-TCTGGC-ATAGTCTGGG-CGCACCAAG--TAGGG-AA-CAATTACCCAAAGGGCAAA-GGTAACATGGAGGGCCAAATT-AAA-AA-TAA-----CGacc
gi|8 : tataaCATTGAG--CTCCAGCCTTTATACACTTTGT-G--CTAAT--AG-AAAATAACGACAA---AA-T--TCAATCGTACT-CACCGA-TGACTTTTAATCGGCATAGTTA-TACT-GGCCA-CAGCTGCT--TAAACAATAA-GAG-AG----GC-C-GAAGCATCACAT-TAC-TGCAGTTTTGGATTTTT-ATTGC--TTGGACAATG-CAAGGAGAACTAGGTGAGCCCTCGGGCA-CA-GA-TGCCACACCA-G--TTTGTGAGATCGTTCCT---TACTGAAAAATT-------AA---TTTA-
gi|9 : tattaaagaAGATGTATTGAA--TTCCAAC--TCATGCACCTTGGTG--CTAA---AG-ACAATAAAGA-AAGAAAA-A-AGCAA-AGTACT-CTTCAAATGA-TTTTAATTGGC-----TA-TACT-GGCCA-CGGCTGCT-ATAAACAAT-ACGAG-GG---AGTGT-G-A-CATCA-AT-TAC-TGCCTATTTGGG----C-ATC-A--CTTGACAATA-TAGGAGGAACT-GGTGAATCCT-GGGCA-CA-GATTCT--CACCA-G--TTT----GACCA--CCTAG-TACTGGACAATTCAA--TC-A---TTTA-AA-t
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GATATTCCATTGTACTGATCGAAGCCATATATTGGAAGCATCATTGCC