lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111 1111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111
lowQualScore : 111 2222222 1 22222 11 11111111111 1 2222222222 1 66666666666666666 222222 1111 111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 444 2 1 11 222 2222222222 11 33333333333333333333333333333333 1111 44444444 1 444444 22 22 1 1 11 33 1 333 1 22 3333 1 555555 22 3333 5555555555555555555555 1 888888888888888888888888 55555 11 1 222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 1 22 5555555555555555 4 1 000000000000000000 222222 4444444 1 55555
lowQualScore : 8 444 0000000 0 11111 8 8 5 33 6 6 6 6 66666666666 6 4 3 1111111111 1 3 88888888888888888 222222 6 7777 7 6 7777777 777 6 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 888 3 1 6 1 3 2 6 44 555 4 3 5 7777777777 00 00000000000000000000000000000000 6 0 7777 8 00000000 9 2 999999 88 0 33 3 5 1 7 88 44 5 111 0 22 2222 2 333333 0 33 4 6 7777 7777777777777777777777 1 8 7 3 9 555555555555555555555555 77777 4 88 3 333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 5 00 7777777777777777 4 4 0 2 5 777777777777777777 333333 77 9999999 5 44444
lowQualScore : . ... ....... . ..... . . . .. . . . . ........... . . . .......... . . ................. ...... . .... . . ....... ... . . ........................................................................................................... ... . . . . . . . .. ... . . . .......... .. ................................ . . .... . ........ . . ...... .. . .. . . . . .. .. . ... . .. .... . ...... . .. . . .... ...................... . . . . . ........................ ..... . .. . ... .......................................................................................................... . . .. ................ . . . . . .................. ...... .. ....... . .....
lowQualScore : 0 000 6666666 2 44444 0 0 0 11 7 7 7 7 00000000000 3 2 3 0000000000 0 5 55555555555555555 333333 7 2222 3 7 7777777 555 3 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 000 7 0 7 0 0 3 7 00 000 3 0 7 1111111111 00 44444444444444444444444444444444 6 8 0000 0 00000000 2 5 333333 44 8 22 2 5 7 0 22 88 0 222 0 55 6666 0 333333 7 00 7 7 3333 3333333333333333333333 0 3 3 3 0 777777777777777777777777 55555 7 33 3 333 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 77 5555555555555555 0 0 0 5 0 000000000000000000 000000 00 0000000 0 00000
consensus : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTC--TA-AT-AAC-TTTACACGCATCGTAT-AA-AA-AACT-AAAT--AA----A--TAGGTATTNGATGGCNAATA------TNC-GCTACTTTTCTGAAAAAAT-AAA-TTGT-TT-TG-AATATAA--CTCGATTTA-TTCT-TNNAAAACGTA-CCTTATAA-CT--TTNTATTTTAC-TA----GAGAA-ATAGCCG--AACGTATGC-GAG-GTTT-ATCTCACATACGAGACTT-------CA-A--GCA-T--G--ACGTC-AC-ACCAGN-----A---ACAATCATG---ACNGCGA-ACGATTTCTTTTGACAGTG-AT-AGCAAAAACTTTCTT-TACCATTAC---------CGATTACTGAGA-AGAGAAAGTGATAA-ATG---AAAGCGAT-TTTTTGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCGTCAATGTCAGTCGCA---GAGA-GGGCGGGG-AG-AATATCTTGGTTT--G--TTTTC--ANAGACGTAA--ACGCTTTA---C-T------TT-TTTCC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG--TTGT-TATTACTAATAAATCACAAGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCNCC--TTGT-GTTGT---TTTTATTGA----ATT--G--TTTTTTTCCATN-TG----------CGTT-AAC-TAAA-TTATT-TCATGTA-T-GCA--GCTTCAATG--TA-CATTCGTCGC------TTAAAGAAAATACCAAT-TCACATGAAANTTTAGAGAATCNGAAGTGTCANTT-TANAAAGAGAAAGTTACAAANGNAGAA---CTGTGACAGNGTTTTAATATNNTCCTGCAA-ATTGT-TTGAGCAAA-TGATTCTAAAATT
Reference ( gi|1 ) : CGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGATTAAGTC--TT-AT-AAC-TTCACACGCATCAAAT-AA-AA-AACT-AAAT--AA----A--TAGGTGTTTGATGGCTAATA------TAC-GCTACTTTTCTGAAAAAAT-AAATTTGTATTTTG-AATATAAA-CTCGATTTA-TTCT-TAAAAAACATA-CCTTACAA-CT--ATGTACTTTACGTACCACGAGAACATAGCCGGAAACGTATGC-GAG-GTTT-ATATCCTATGCGAGGATTAGGA---CA-A--GCGAT--G--ACGTCTAC-ACCAGT-----A-T-ACAATCATG-CAACAGCGA-ACGATCTCTATTGACAGTG-AT-GGCAATAATTTTCTT-TACCATTAC---------CGATCGCTGAGA-AGAGAAA-TTACAACATGA--AAAGCGATGTTTTTGTGAACGCATAG----GTA-TCGGGCCAATTAATAGGTTTGAGCCTCGAAAAGGCCGAGGGACATTACGAGTAAAAA-GCGATAATCCGGCCTTACAACCCGACGTCCACAGATGCGTTAATGTCCGTCACA---GAAA-GGTTGGGG-AATAATATCGTGGTT---G--TTTCCAAAAAGACGTAA--CTGCTTTA-ATCTTCTAAACTTTTTTTCTTCCTTTCTAAATTGTCTACACGCG-TGCAGTATATCACAATCTTTGCCTTGTATATTACTAATAAATCACAAGTAGACGTAGGTCTA----CCCCCCCCCCCCTCTCC--TTGT-GTTGT---TTTTA-TGA---CACTCAAAATTTTTTTCCATT-TG----------TGTTGAACTTAAATTTATTCTCATGTATTGGCATCGCTTCAATG--TACCATTCGTCGC-CA---TTAAAGAAAATCCCAAT-TCACATGGAGCTTTAGAGAATCAGAAGTGTCATTTGTAGAAAGATAAAG-TACAAATGTAAAAGACTTGTGACAGTG-TT-AATATTTTCCTGCAATATCGTCTTCAGCAAATTTAATCTAAAATT
gi|3 : GGGTCCCGGCACGTTTTACCAATGCTAACGGTTC-ATTTTAAAGCTTTTACAAGTTGAGTAAGTC--TA-AT-AAC-TTCACACGCATCGTATAAA-AA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCGCATA------TACAGTTACT------AAA---------TTGTCCTGTG-AATATAAA-CTCGATTGG-TTCT-TCTAAAACGTA-CCTTATAA-CT--TTCTATTTT-TTTG----GA----ATAACCG--AAT-----------GTTC-ACATC-----CGA-GATTA-GATTTC--A--TCAATGGG--ACGTC-ACAACCAGTGCAAAA-A-ACAATCATG-AGTGAGCGA-ACGAT-TCTTTTGACAGTG-GT-AGCAAAAATTCTAAA-TGCCATTAC---------CGATTACT
gi|2 : GGTCGCGGCACTTTTTACCAATACTGACAGTTCCAT---GAAGCTTTT----TTTGATTAAGTC--TTTATTAAC-TTCTCA-GCAGCAAAT-AA-AA-AACTCAAAT--AA----AAATAGGT-TCTGATG-CAAATA-------GC-G-TACTTTTCTGAAAAAATTAAAGTTGTATTATG-AATATAAAACTCGATTTA-TGCT-TTTAAAACATA-CCTTACAAACT--ATGTACTTTACGCA-------AA-ATAGCCG--AACGTATGCTGAG-AGTT-ATATC-TA-GCGAGACTT-------CA----GCAGT--G--ACGTC-AC-ACCAGA-----A-TTACAATCATG---ACAGCGACACGAT-TCTTTTGACAGTGTATCGGCACAAAATTTCTT-TATC--TAC----------GATCGCTGAGACAGA-AAG-TTACAA--TGG--AA---GAT--TTTTGTGA-CGCATAG----TTAATCGG-CC--TTAATAGGTTTGAGCCTCGAAA-GGCCGAGGGAAAT-ACGAGTAAAAAAGCGATA--CCGGCCT-ACAACTC-ACGTCCACAGATGCGT-AATGTCAGTCACATC-AAAATGGGGGGGGCAATAATAGCTTGGTTTGAGATTTTCCAAAGA-ACGTAAAAC-GCTTTACATCCT------TCTTTTTTTTCCCTTCTAAATGATC-ACACGCGATGTA-TATA-CACAAT--TTG--TTGTTCATTACTAATAAATCACATGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCTCC--TTGTCGTTGTTCATTTTATTGA----ACTCAA----TTTTTCCA-C-TG----------TGTT-AACGT-AATTTATT-TCATGTAAT-GCA--GCTTCAATGAATA-CATTCGTCGC-------TAAA-AAACTACCAAT-TCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagtctcgaaaggccgtgggaacggtgagtaaaagcgataatcgttcctacagtccaacgtctccagatcgtaatgtcagtcgcagaggagggggtggggattgggggtatcataatatatatcgccagactatgttttattctactttgactacacgcgtgtacacaaatatcttgttattacgaa
gi|13 : ggcGGTCCCAGGACTTTTAACCAATATTGATAGTTC-AT---GAAGCTTTT----TTAAAGTAAATC--GA-AT-AAT-TTTAAACGCATCCTAT-AA-AA-AACG-AAAT--AG----A--TAGGTATT
gi|4 : GTCCTGGTACTTTTTACCAATATTGACAGTCC-AT---GAAGTTTTT----CCTAAGTAAGTCAATT-AT-ACCATTTA-ACGCATTGTAT-AA-AAAAACT-AAAT--CA----A--TAGGTATTCAATGGCTAATA------TCC-ACTACTTCTCTGATAAAAT--AATTTG--TTTTGTAATATAAC-ATTGATTTACTTCTCTAAAAA--GTA-CCTGATGA-TT--TTACAATTTACG--------GAA-ATAGCTG--AACGTATGC-GA--GTTT-ATCTCACATACGAAACTT-------CT-A---CATT--GTTACTTC-AT-ACCAAT-----A---ACAATCATG---ACTGCGG-ACG-TTTCTCTCGACAGTG-AT-AGCA--AACATTCTT-AACCATTACTAGTCCCCACGATTACTGAG--AGAGAAAGTGATA--ATG---AAAGTGA--TTTTTGAGAATGTGTGG----GTG-TCGGG---GTTTATAGGTTTGGACCTC-AAAAGACAGAGGGA-ACTGCGAaaat
gi|12 : CGGCACTTTTTAACAATACATACATTTC-AT---GAAGCTTTT----T--GAGTAAGTC--TA-AT-AGA-TTTACACAAATCGTAT-AA-AA--ACT-AAAT--CA----A--CAGGCGTTAGTTAGCTAATA------TAC-GCTACTaaag
gi|7 : gctgAAT-AGGAA-AACT-AAATCTAACGTTA--CAGTTATA-GATGGCGAATACATGTATAA-GCTACTTTTAT--AAAACC-AAA------------AATA---------ATTTG-TTTT---AGGAATATA-------AA-CTCGATTT--TTTATTTA--ACG-GAA-ATAGCCG--AACGTATGC-GAGAGATT-ATCTCACATGCGAGCCTT-------CA-ACAGTG-T--G--ACATC-AT-ACCCGT-----AAT-ACAATCATG---ACTGCGA-CTGAT-TCATTTGA-AGTG-AT-AGTAAAAATTCTTTTATACCATTAC---------CGATTACTGAG--AGAGAAAGTGATA--ATG---AAAGCGA--TTTTTGTGAACGCATAATTATGTA-TCGGGCC
gi|5 : ATTGTTAATA------TTC-GCTACATTTCTAAGAAAA---------------A-AATATA--------------TCT-TAAAAA-TATAACCTCGC----T--TTATATTTTAC-----ACAA----ATAGCCG--AACTTATAC-GGGAGTTT-ATCTCACATACGAGGCTT-------CA-A---CAAT--GTGACATC-AC-ACCAAG-----A---ACAATCGTGACTACAG----AT-ATTTCTTTTGTCACTG-AAAGGCAAT---TTTCTT-TACAACTAC---------CGATTACTGAG--AGAGGAA-----GAGATAATCAAAGCG--CTTTTTGAGAATGTATGG----GCA-TCAGG-CAGT--ATAAGTTTGAAACTCGGAGGGG-CGAAAGA-ACTGCGAGTAGAAA--TGATAAT-TGG-CTTAGAACTGAACGTCCCCAGtta
gi|11 : TTTTCT-AAAACAT-GA-TTTGTATTAGG-AATATCAT-CTTGACATA-TTCT-TCTAAAACATA-CC-TATAA-TT--TCATATTTTA--------GGGAA-ATAG--ATAAATGTATAC-GCA-ATTT--TATC
gi|8 : tttATACCCG--AGTGTATGC-GAT-ATTTTATCTCACATACGATACTTAA-A---CATA--G---T--G--ACGTCAAA-TTCAGA-----A-C-ACAATCATG---ACCGTAA-GCAATTCGTA-TGACAGTG-AT-AACA--GACGTT-TT-TATCATATC---------CAATTACTGAtcacaaccgagacttgaataacattcataactgtgcacctttctttttacgctaatagaaaa
gi|16 : aaTCTT-TACCATTAC----------------TGAGA--GAGA-------------------GC--TATTTTTGAAAACACATGG----GTA-TCA---TAACTTATAGATTTGAGCCTCGAAacttatggggatcagggctgataggagggaactgaatagaagtaataatcggcctacaacccaatgttcccagacagtgataacagac
gi|3 : TGAGTCTCGAAA-GGCCGTGGGA-ACGGTGAGTAAAA--GCGATAAT-CGTTCCTACAGTCCAACGTCTCCAGAT-CG-TAATGTCAGTCGCAGAGGAGG-GGGTGGGG-A
gi|8 : gggtcccggcacgttttaccaatgctaacggttcattttaaagcttttacaagttgagtaagtctaataacttcacacgcatcgtataaaaaaactaaataaataggtgttagatggcgcatatacagttactaaattgtcctgtgaatataaactcgattggttcttctaaaacgtaccttataactttctatttttttggaataaccgaatgttcacatccgagattagatttcatcaatgggacgtcacaaccagtgcaaaaaacaatcatgagtgagcgaacgattcttttgacagtggtagcaaaaattctaaatgccattaccgattactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGGGA-ACT--GAATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGAttgggggtatcataatatatatcgccagactatgttttattctactttgactacacgcgtgtacacaaatatcttgttattacgaa
gi|10 : aaatacccgagtgtatgcgatattttatctcacatacgatacttaaacatagtgacgtcaaattcagaacacaatcatgaccgtaagcaattcgtatgacagtgataacagacgtttttatcatatccaattactgaacttatggggatcagggctgatagAGGGA-ACT--GAATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGA-GCG-CACTGTCAGTCGTA---GAGA-GCACAGGG----AATATCTTGATT---T--TTTTC--ATAGACGTAA--ACGCTTTA---CATCTGGGGTT----------TTTCTAATTTGACTTTACACA-TGGA-TATACT----TTTTTG-CTTCT-TATTGCGAATAAGTCACAAGTcagtgataacagac
gi|6 : TTACAACCCAACGTCAACAGAT-CGT-AATGTCAGTTATA---GAAA-GGT-GGGG-AG-AATATCATGGTTT--G--TTTTTTCAAAGACGTAA--ATGCATTA-----------CATATTTCC--CCCTTCTAAATTGACTACATGCG-TGTA-TATA-CATAATGT--GC-TTGT-TATTACTAATAAACCACAATTAGACATAGGTCTA--------TACCCCCCTCACC--TTGT-GTTGC---TTTTATTGAAATCATT-----TTTTTTTCCATTGTGTAGTTGTTTTTGTTAAAC-TAAAATTAT--TCATGTA-TGACAT-GTTTCAATG--TA-CATTTGTCACATAAACTTAAAAAAAATAACAA--TCACATGAAAGTTTAGAGAA
gi|9 : CCCCCCCCCCCTCCCCATTTGT-GTTGT---TTTTA-AGA---AATT--GAATTTTT---CATA-TG----------CG--------AAA--TGCTATCATGTA----------------------CATTTGTTAC------TTGAAGAAAAGACCTATCTCAC----AACT--------TCAGAAGTGTCAATT-TATAAAGAGAAAGTTACAAAAGTAGAA---CTGTGACAGGGTTT-AATATTGTCCTGCAA-ATTGT-TTGAGCAAA-TGATTCTAAAATT
gi|14 : TCTGAAGTGTCATTT-TAGAAAGAGAAAG------ATAGAAA-----TGTGATAGTA-TTTAATATATTCCTGCAA-ATTGT-TTGAGTAAAa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): CTTTTAGCAGCCTTATAAAATGACCACTTGTGAGATACTAGCTTTTAAAATGAAACACTTTGTGAAGTACTAAT
Unaligned ( gi|17 ): TTTAGCAAGTTTTTAAAATGATCACTTGTGAGATACTAA
Alignments
lowQualScore : 111 11111 11111 1111 111111 1111 11111 22222222 2222222 11 666666666 1111 11 5555555555555555 3333333333 111 11 222222222 222 2222 11 1111 222222 1 11 1 1 11 22 222 11 333333333 22222 11111 999999999999999999999999999999999999 111 22222222 11 1 111 555555555555555 88888888888888888888888888888888888888888888888888888 1 11 1 3333333333 11 1 2 2222 2 1 1 1
lowQualScore : 6 111 99999 33333 6 2 6 5 5 77 2222 77 4 11 1 666666 1 5 0 5 0 2222 77 22222 55555555 5 7777777 1 1 1 11 6 5 999 5 1 444444444 5 66 0000 5 5 11 5 3 55 5555555555555555 66 0 5 55 5 0000000000 66 66 1 5 444 5 5 5 0 66 8888 000000000 111 444 4444 6 1 66 6 1 4444 6 111111 1 3 5 6 3 44 7 1 2 0 00 44 555 8 22 555555555 6 0 00000 77777 1 8 0 8 444444444444444444444444444444444444 1 0 8 222 8 0 00000000 8 8 0 7 2 1 33 0 777 9 333333333333333 2 77777777777777777777777777777777777777777777777777777 0 3 33 0 0000000000 44 33 8888 1 7 1 1 3 1 3 5 1 7777 1 3 7 22 3 3 3 2 4
lowQualScore : . ... ..... ..... . . . . . .. .... .. . .. . ...... . . . . . .... .. ..... ........ . ....... . . . .. . . ... . . ......... . .. .... . . .. . . .. ................ .. . . .. . .......... .. .. . . ... . . . . .. .... ......... ... ... .... . . .. . . .... . ...... . . . . . .. . . . . .. .. ... . .. ......... . . ..... ..... . . . . .................................... . . . ... . . ........ . . . . . . .. . ... . ............... . ..................................................... . . .. . .......... .. .. .... . . . . . . . . . .... . . . .. . . . . .
lowQualScore : 7 777 88888 77777 7 5 7 7 7 99 1111 99 4 11 0 444444 0 7 4 3 3 1111 99 11111 44444444 7 1111111 7 6 4 66 3 7 333 7 0 000000000 0 99 6666 0 0 44 0 1 88 2222222222222222 99 2 0 22 0 1111111111 99 99 0 0 000 0 0 0 4 00 3333 000000000 222 333 3333 7 0 55 7 0 2222 7 000000 4 2 7 6 7 00 7 0 0 7 88 00 000 0 88 222222222 2 8 22222 00000 0 0 8 0 000000000000000000000000000000000000 4 8 0 444 0 8 88888888 0 0 6 3 5 0 88 0 555 8 888888888888888 5 00000000000000000000000000000000000000000000000000000 0 2 88 0 5555555555 00 22 7777 0 3 0 0 3 0 7 7 0 0000 0 7 3 00 3 3 3 5 0
consensus : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTTAC-------GGGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----CA--AGC-G---TG--ACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAATTTTCT--T-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGAT-A-ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCGT-AATGTCAGTCGCA---GAAA-GGGCGGGG--A----G-AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTT----------ACA------TTT----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTGC-TTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCTCC--TTGT-GTTGT---TTTTATTGA-A----CT----NNNTTTTTCCATT-------TGT----GTT-AA-C-TAAA-TTATT-TCATGT-AT--G-CAT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TACAAA-GTAGAA---NTGTGACAGTG-TTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
Reference ( family-5074 ) : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTTACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTATTNGATGGCNAATA------TNC-GCTACTTTTCTGAAA----AAAT--AAAT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTNNAAAACGTA-CCTTATAA-CTTTNTATTTTAC-TA----GAGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----CA--AGC-A---TG--ACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAACTTTCT--T-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGATAA-ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCGTCAATGTCAGTCGCA---GAGA-GGGCGGGG--A----G-AATATCTTGGTTTG----TTTT--C--ANAGA-CGTAAA-CGCTTT----------AC-------TTT----TTTCC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG--TTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCNCC--TTGT-GTTGT---TTTTATTGA-A----TT----GTTTTTTTCCATN-------TGC----GTT-AA-C-TAAA-TTATT-TCATGT-AT--G-CA--GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGAAANTTTAGAGAATCNGAAGTGTCANTT-TANAAAGAGAAAGTTACAAANGNAGAA---CTGTGACAGNGTTTTAATATNNTCCTGCAA-ATTGT-TTGAGCAAA-TGATTCTAAAATT
gi|1 : GGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGATTAAGTCT--T--ATAAC-TTCACACGCATCAAAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTTGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AAATTTGTAT--TT-T--G-AATATAAA--C-TCGATTTATTCTTAAAAAACATA-CCTTACAA-CTATGTACTTTACGTACCACGAGAACATAGCCGGAAACGT----ATGC-G-AG-GTTT-ATATCCTATG-CGAGGATTAGGACA--AGCGA---TG--ACGTCTAC-A-CCAG------TAT-ACAATCATGCAA--CAGCGA-ACGATCTCTATTGACAGTG-AT-GG-CAATAATTTTCT--T-TACCATTAC---------CGATCGCTGAGAAGAGAAA-TTACAACATGAAAAGCGATGTTTT-TGTGAACGCATAG----GTA-TCGGGCCAATTAATAGGTTTGAGCCTCGAAAAGGCCGAGGGACATTACGAGTAAAAA-GCGATAATCCGGCCTTACAACCCGACGTCCACAGATGCGTTAATGTCCGTCACA---GAAA-GGTTGGGG--A----ATAATATCGTGG-TTG----TTTC--CAAAAAGA-CGTAAC-TGCTTTAATCTTCTAAAC-------TTT----TTTTCTTCCTTTCTAAATTGTCTACACGCG-TGCAGTATATCACAATCTTTGCCTTGTAT-ATTACTAATAAATCACAAGTAGACGTAGGTCTA----CCCCCCCCCCCCTCTCC--TTGT-GTTGT---TTTTA-TGACA----CTCAAAATTTTTTTCCATT-------TGT----GTTGAA-CTTAAATTTATTCTCATGT-ATTGG-CATCGCT-TCAATG--TACCATTCGTC------GCCATTAAAGAAAATCCCAAT-TCACATGGAGCTTTAGAGAATCAGAAGTGTCATTTGTAGAAAGATAAAG-TACAAATGTAAAAGACTTGTGACAGTG--TTAATATTTTCCTGCAATATCGTCTTCAGCAAATTTAATCTAAAATT
gi|10 : cAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGA-GCG-CACTGTCAGTCGTA---GAGA-GCACAGGG--A-------ATATCTTGATTT-----TTTT--C--ATAGA-CGTAAA-CGCTTT----------ACA------TCTGGGGTTT-------TTCTAATTTGACTTTACACA-TGGA-TATA-CTT--T-TTTGC-TTCT-T-ATTGCGAATAAGTCACAAGT
gi|11 : TTTTCT-AAA----ACAT--GATT---TGT--AT-TAGG-AATAT-CAT-C-TTGACATATTCTTCTAAAACATA-CCT-ATAA-TTTCATATTTTA--------GGGAA-ATAGATA--AATGT----ATAC-GCAA-TTTT-ATCTCACAAC-CGAGACTT----GA--A--------------------------------TA--ACATTCATA--A--CTGTGC-AC-CTTTCTTTTTACGCTA-AT-AG-AAAA
gi|12 : tttCGGCACTTTTTAACAATACATACATTTC-AT---GAAGCTTTT------TGAGTAAGTCT--A--ATAGA-TTTACACAAATCGTAT--AAA-AACT-AAAT--CA----A--CAGGCGTTAGTTAGCTAATA------TAC-GCTACT
gi|13 : gctgGGTCCCAGGACTTTTAACCAATATTGATAGTTC-AT---GAAGCTTTT----TTAAAGTAAATCG--A--ATAAT-TTTAAACGCATCCTAT-AAAA-AACG-AAAT--AG----A--TAGGTATTAAAT
gi|14 : TCTGAAGTGTCATTT-TAGAAAGAGAAAG--------ATAGAA---ATGTGATAGTATTT-AATATATTCCTGCAA-ATTGT-TTGAGTAAA-
gi|16 : gagaagttaactgacaacttaatTTAC---------C-ATTACTGAGA-----------------G-AGAGCTAT-TTTT--GAAAACACATGG----GTA-TCA---TAACTTATAGATTTGAGCCTCGAA
gi|2 : tctGGTCGCGGCACTTTTTACCAATACTGACAGTTCCAT---GAAGCTTTT----TTTGATTAAGTCTTTA--TTAAC-TTCTCA-GCAGCAAAT-AAAA-AACTCAAAT--AA----AAATAGGT-TCTGATG-CAAATA-------GC-G-TACTTTTCTGAAA----AAATTAAAGT---TGTA-TTAT--G-AATAT-AAAAC-TCGATTTATGCTTTTAAAACATA-CCTTACAAACTATGTACTTTAC-------GCAAA-ATAGCCG--AACGT----ATGCTG-AG-AGTT-ATATC---TAGCGAGACTT----CA---GC-AG--TG--ACGTC-AC-A-CCAG------AATTACAATCATG--A--CAGCGACACGATT-CTTTTGACAGTGTATCGG-CACAAAATTTCT--T-TATC--TAC----------GATCGCTGAGAC-AGAAAGTTACAA--TG-GAAG--AT-TTTTGTGA---CGCATAG----TTAATCGG-CC--TTAATAGGTTTGAGCCTCGAAAGG-CCGAGGGA-AATACGAGTAAAAAAGCGATA--CCGGCCT-ACAACTCA-CGTCCACAGATGCGT-AATGTCAGTCACATC-AAAATGGGGGGGGCAA----T-AATAGCTTGGTTTGAGATTTTC--C--AAAGAACGTAAAACGCTTT----------ACATCCTTCTTT----TTTTT--CCCTTCTAAAT-GATCACACGCGATGTA-TATA-CACAA--TTTG--TTGT-TCATTACTAATAAATCACATGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCTCC--TTGTCGTTGTTCATTTTATTGA-A----CT----CAATTTTTCCA-C-------TGT----GTT-AA-CGTAAT-TTATT-TCATGTAAT--G-CA--GCT-TCAATGAATA-CATTCGTC------GC--T--AAAAAACTACCAAT-TCA
gi|3 : ggcGGGTCCCGGCACGTTTTACCAATGCTAACGGTTC-ATTTTAAAGCTTTTACAAGTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTATAAAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCGCATA------TACAGTTAC-----------------T--AAAT---TGTCCTG-T--G-AATATAAA--C-TCGATTGGTTCTTCTAAAACGTA-CCTTATAA-CTTTCTATTTTTT-T-------GGA-ATAACCG--AATGTTCACATCC-G-AG-ATT---------------AGATTT----CATCAAT-G---GG--ACGTC-ACAA-CCAGTGCAAAAA--ACAATCATG--AGTGAGCGA-ACGA-TTCTTTTGACAGTG-GT-AG-CAAAAA--TTCTAAA-TGCCATTAC---------CGATTACT
gi|3 : TGAGTCTCGAAAGG-CCGTGGGA-ACGGTGAGTA-AAA-GCGATAATC-GTTCCTACAGTCCAACGTCTCCAGAT-CGT-AATGTCAGTCGCAGAGGAGG-GGGTGGGG--ATTGGG-GGTATCATAATATA----TATC--G--CCAGA-C-T--A-TGTTTT----------A-------------------------TTCTACTTTGACTACACGCG-TG-----TA-CACAAA-TATC--TTGT-T-ATTACGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagtctcgaaaggccgtgggaacggtgagtaaaagcgataatcgttcctacagtccaacgtctccagatcgtaatgtcagtcgcagaggagggggtggggattgggggtatcataatatatatcgccagactatgttttattctactttgactacacgcgtgtacacaaatatcttgttattacgaa
gi|4 : gggtcccggcacgttttaccaatgctaacggttcattttaaagcttttacaagttgagtaagtctaataacttcacacgcatcgtataaaaaaactaaataaataggtgttagatggcgcatatacagttactaaattgtcctgtgaatataaactcgattggttcttctaaaacgtaccttataactttctatttttttggaataaccgaatgttcacatccgagattagatttcatcaatgggacgtcacaaccagtgcaaaaaacaatcatgagtgagcgaacgattcttttgacagtggtagcaaaaattctaaatgccattaccgattactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCCTGGTACTTTTTACCAATATTGACAGTCC-AT---GAAGTTTTT----CCTAAGTAAGTCA--ATTATACCATTTA-ACGCATTGTAT-AAAAAAACT-AAAT--CA----A--TAGGTATTCAATGGCTAATA------TCC-ACTACTTCTCTGATA----AAAT--AATT---TGT--TT-T--GTAATAT-AA--CATTGATTTACTTCTCTAAAAAGTA-CCTGATGA-TTTTACAATTTAC--------GGAA-ATAGCTG--AACGT----ATGC-G-A--GTTT-ATCTCACATA-CGAAACTT----CT--A-C-AT--TGTTACTTC-AT-A-CCAA------TA--ACAATCATG--A--CTGCGG-ACG-TTTCTCTCGACAGTG-AT-AG-CAAACA--TTCT--T-AACCATTACTAGTCCCCACGATTACTGAG-AGAGAAAGTGAT-A-ATG-AAAGTGA--TTTT-TGAGAATGTGTGG----GTG-TCGGG---GTTTATAGGTTTGGACCTC-AAAAGACAGAGGGA-ACTGCGA
gi|5 : ATTGTTAATA------TTC-GCTACATTTCTAAGA----AAA---------------------A-AATAT-A--------------TCTTA-AAAATATAACCTCG----CTTTATATTTTAC--------ACAA-ATAGCCG--AACTT----ATAC-G-GGAGTTT-ATCTCACATA-CGAGGCTT----CA--A-C-AATGTG--ACATC-AC-A-CCAA------GA--ACAATCGTG--A--CTACAG-AT-ATTTCTTTTGTCACTG-AA-AGGCAA---TTTTCT--T-TACAACTAC---------CGATTACTGAG-AGAGGAAGAGAT-A-ATC-AAAGCG-C-TTTT-TGAGAATGTATGG----GCA-TCAGG-CAG--TATAAGTTTGAAACTCGGAGGGG-CGAAAGA-ACTGCGAGTAGAAA--TGATAAT-TGG-CTTAGAACTGAACGTCCCCAGaaag
gi|6 : TTACAACCCAACGTCAACAGAT-CGT-AATGTCAGTTATA---GAAA-GG-TGGGG--A----G-AATATCATGGTTTG----TTTTTTC--AAAGA-CGTAAA-TGCATT----------AC-------ATA----TTTCC--CCCTTCTAAATTGACTACATGCG-TGTA-TATA-CATAAT-GTGC--TTGT-T-ATTACTAATAAACCACAATTAGACATAGGTCTATACCCCCC--------TCACC--TTGT-GTTGC---TTTTATTGA-AATCATT-----TTTTTTTCCATTGTGTAGTTGTTTTTGTT-AAAC-TAAAATTATT--CATGT-AT--GACAT-GTT-TCAATG--TA-CATTTGTCACATAAAC--TTAAAAAAAATAACAA--TCACATGAAAGTTTAGAGAA
gi|7 : AA-AACT-AAATCTAACGTTA--CAGTTAT-AGATGGCGAATACATGTATAA-GCTACTTTTATAAAACCAAAAAT--AATT---TGT--TT-TAGG-AA----------------TAT-------AAAC----TC----GA-TTTTTTATTTAAC--------GGAA-ATAGCCG--AACGT----ATGC-G-AGAGATT-ATCTCACATG-CGAGCCTT----CAACAGT-G---TG--ACATC-AT-A-CCCG------TAATACAATCATG--A--CTGCGA-CTGA-TTCATTTGA-AGTG-AT-AG-TAAAAATTCTTT--TATACCATTAC---------CGATTACTGAG-AGAGAAAGTGAT-A-ATG-AAAGCGA--TTTT-TGTGAACGCATAATTATGTA-TCGGGCC
gi|8 : aataggAA-ATACCCG--AGTGT----ATGC-G-AT-ATTTTATCTCACATA-CGATACTT-----A--AAC-ATAGTG--ACGTC-AA-ATTCAG------AAC-ACAATCATG--A--CCGTAA-GCAA-TTCGTATGACAGTG-AT-AA-C--AGACGTT-T--T-TATCATATC---------CAATTACTGAtta
gi|8 : GAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGAacttatggggatcagggctgataggagggaactgaatagaagtaataatcggcctacaacccaatgttcccagacagtgataacagac
gi|9 : aaatacccgagtgtatgcgatattttatctcacatacgatacttaaacatagtgacgtcaaattcagaacacaatcatgaccgtaagcaattcgtatgacagtgataacagacgtttttatcatatccaattactgaacttatggggatcagggctgatagCCCCCCCCCCCTCCCCATTTGT-GTTGT---TTTTAAGAA-A----TT----GAATTTTTC-ATA-------TGC----G---------AAA-T----------------------GCTATCA-TG--TA-CATTTGTT------AC--TTGAAGAAAAGACCTATCTCAC----AACT--------TCAGAAGTGTCAATT-TATAAAGAGAAAGTTACAAAAGTAGAA---CTGTGACAGGG-TTTAATATTGTCCTGCAA-ATTGT-TTGAGCAAA-TGATTCTAAAATTcagtgataacagac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTTTTAGCAGCCTTATAAAATGACCACTTGTGAGATACTAGCTTTTAAAATGAAACACTTTGTGAAGTACTAAT
Unaligned ( gi|17 ): TTTAGCAAGTTTTTAAAATGATCACTTGTGAGATACTAA
Alignments
lowQualScore : 111 1111 11111 1111 111111 1111 111 22222222 3333333 222222222222 1111 11 44444444444444444 3333333333 111 222222222 222 11 1111 222222 1 11 1 1 11 222 11 333333333 22222 11111 111 444444444444444444444444 1111 111 111 2222 1 111 33333333333333 111 1 888888888888888888888888888888888888888888888 1 11 1 3333333333 11 1 444444444 2222 1 1 1
lowQualScore : 6 111 4444 1 33333 6 2 6 5 5 77 2222 77 0 5 1 666666 0 5 0 5 0 2222 77 3 000 55555555 5 0000000 0 6666666 6 5 444 5 1 111111111111 5 66 0000 5 5 11 5 3 55 99999999999999999 5 0 5 55 5 0000000000 66 66 1 5 444 5 5 5 11 1 2 5 000000000 111 444 99 6 1 66 6 1 4444 6 111111 1 3 5 6 3 44 7 1 2 0 00 8 555 8 22 555555555 1 0 00000 77777 1 8 000 1 888888888888888888888888 5555 0 1 0 8 222 8 0 8 888 8 8 0 3333 1 0 777 9 44444444444444 2 444 0 555555555555555555555555555555555555555555555 0 3 33 0 0000000000 44 33 8888 7 3 111111111 4444 7 3 0 3 3 1 1
lowQualScore : . ... .... . ..... . . . . . .. .... .. . . . ...... . . . . . .... .. . ... ........ . ....... . ....... . . ... . . ............ . .. .... . . .. . . .. ................. . . . .. . .......... .. .. . . ... . . . .. . . . ......... ... ... .. . . .. . . .... . ...... . . . . . .. . . . . .. . ... . .. ......... . . ..... ..... . . ... . ........................ .... . . . . ... . . . ... . . . .... . . ... . .............. . ... . ............................................. . . .. . .......... .. .. .... . . ......... .... . . . . . . .
lowQualScore : 7 777 2222 7 77777 7 5 7 7 7 99 1111 99 4 1 6 444444 3 7 4 3 3 1111 99 0 000 44444444 7 7777777 7 7777777 3 7 333 7 0 777777777777 0 99 6666 0 0 44 0 1 88 00000000000000000 0 2 0 22 0 1111111111 99 99 0 0 000 0 0 0 77 7 3 7 000000000 222 333 22 7 0 55 7 0 2222 7 000000 4 2 7 6 7 00 7 0 0 7 88 0 000 0 88 222222222 0 8 22222 00000 0 0 000 0 666666666666666666666666 0000 8 0 8 0 444 0 8 0 666 0 0 6 8888 2 0 555 8 00000000000000 5 555 0 222222222222222222222222222222222222222222222 0 2 88 0 5555555555 00 22 3333 3 3 777777777 3333 3 3 7 3 3 0 0
consensus : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTT-------ACGGGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----C-A--A--GC---G-TGACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAATTTTCTT-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCG-TAATGTCAGTCGCA---GAAA-GGGCGGGG--A----G-AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA------CA---T------TT----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NNNTTTTTCCATT-TGT-GTTG---------AAC-T-AAA-TTATT-TCATGT-AT--G-CAT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
Reference ( family-5074 ) : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTT-------ACGGGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----C-A--A--GC---G-TGACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAATTTTCTT-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCG-TAATGTCAGTCGCA---GAAA-GGGCGGGG--A----G-AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA------CA---T------TT----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NNNTTTTTCCATT-TGT-GTT----------AAC-T-AAA-TTATT-TCATGT-AT--G-CAT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
gi|1 : GGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGATTAAGTCT--T--ATAAC-TTCACACGCATCAAAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTTGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AAATTTGTAT--TT-T--G-AATATAAA--C-TCGATTTATTCTTAAAAAACATA-CCTTACAA-CTATGTACTTTACGTACCACGAGAACATAGCCGGAAACGT----ATGC-G-AG-GTTT-ATATCCTATG-CGAGGATTAGGAC-A--A--GC---GATGACGTCTAC-A-CCAG------TAT-ACAATCATGCAA--CAGCGA-ACGATCTCTATTGACAGTG-AT-GG-CAATAATTTTCTT-TACCATTAC---------CGATCGCTGAGAAGAGAAA-TTACAACATGAAAAGCGATGTTTT-TGTGAACGCATAG----GTA-TCGGGCCAATTAATAGGTTTGAGCCTCGAAAAGGCCGAGGGACATTACGAGTAAAAA-GCGATAATCCGGCCTTACAACCCGACGTCCACAGATGCGTTAATGTCCGTCACA---GAAA-GGTTGGGG--A----ATAATATCGTGG-TTG----TTTC--CAAAAAGA-CGTAAC-TGCTTTAATCTTCTAAACT------TT----TTTTCTTCCTTTCTAAATTGTCTACACGCG-TGCAGTATATCACAATCTTTGCCTTGTAT-ATTACTAATAAATCACAAGTAGACGTAGGTCTA----CCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTA-TGACA--C-TCAAAATTTTTTTCCATT-TGT-GTTG---------AACTT-AAATTTATTCTCATGT-ATTGG-CATCGCT-TCAATG--TACCATTCGTC------GCCATTAAAGAAAATCCCAAT-TCACATGGAGCTTTAGAGAATCAGAAGTGTCATTTGTAGAAAGATAAAG-TAC-AAATGTAAAAGACTTGTGACAGTG-TTAATATTTTCCTGCAATATCGTCTTCAGCAAATTTAATCTAAAATT
gi|10 : cAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGA-GCG-CACTGTCAGTCGTA---GAGA-GCACAGGG--A-------ATATCTTGATTT-----TTTT--C--ATAGA-CGTAAA-CGCTTTA------CA---T------CTGGGGTTTT-------TCTAATTTGACTTTACACA-TGGA-TATA-CTT--T-TTTG-CTTCT-T-ATTGCGAATAAGTCACAAGT
gi|11 : TTTTCT-AAA----ACAT--GATT---TGT--AT-TAGG-AATAT-CAT-C-TTGACATATTCTTCTAAAACATA-CC-TATAA-TTTCATATTTT-------A-GGGAA-ATAGATA--AATGT----ATAC-GCAA-TTTT-ATCTCACAAC-CGAGACTT----G-A--A--------------------------------TA--ACATTCATA--A--CTGTGC-AC-CTTTCTTTTTACGCTA-AT-AG-AAAA
gi|12 : tttCGGCACTTTTTAACAATACATACATTTC-AT---GAAGCTTTT----T--GAGTAAGTCT--A--ATAGA-TTTACACAAATCGTAT-AAAA--ACT-AAAT--CA----A--CAGGCGTTAGTTAGCTAATA------TAC-GCTACT
gi|13 : gctgGGTCCCAGGACTTTTAACCAATATTGATAGTTC-AT---GAAGCTTTT----TTAAAGTAAATCG--A--ATAAT-TTTAAACGCATCCTAT-AAAA-AACG-AAAT--AG----A--TAGGTATTAAAT
gi|14 : TCTGAAGTGTCATTT-TAGAAAGAGAAAG---------ATAGAA---ATGTGATAGTATTTAATATATTCCTGCAA-ATTGT-TTGAGTAAA-
gi|16 : gagaagttaactgacaacttaatTTAC---------C-ATTACTGAGA-----------------G-AGAGCTAT-TTTT--GAAAACACATGG----GTA-TCA---TAACTTATAGATTTGAGCCTCGAA
gi|2 : tctGGTCGCGGCACTTTTTACCAATACTGACAGTTCCAT---GAAGCTTTT----TTTGATTAAGTCTTTA--TTAAC-TTCTCA-GCAGCAAAT-AAAA-AACTCAAAT--AA----AAATAGGTTCT-GATG-CAAATA-------GC-G-TACTTTTCTGAAA----AAATTAAAGT---TGTA-TTAT--G-AATAT-AAAAC-TCGATTTATGCTTTTAAAACATA-CCTTACAAACTATGTACTTT-------ACGCAAA-ATAGCCG--AACGT----ATGCTG-AG-AGTT-ATATC---TAGCGAGACTT----C-A-----GCA--G-TGACGTC-AC-A-CCAG------AATTACAATCATG--A--CAGCGACACGATT-CTTTTGACAGTGTATCGG-CACAAAATTTCTT-TATC--TAC----------GATCGCTGAGAC-AGAAAGTTACA--ATG-GAAG--AT-TTTTGTGA---CGCATAG----TTAATCGG-CC--TTAATAGGTTTGAGCCTCGAAAGG-CCGAGGGA-AATACGAGTAAAAAAGCGATA--CCGGCCT-ACAACTCA-CGTCCACAGATGCG-TAATGTCAGTCACATC-AAAATGGGGGGGGCAA----T-AATAGCTTGGTTTGAGATTTTC--C--AAAGAACGTAAAACGCTTTA------CA---TCCTTCTTT----TTTTT--CCCTTCTAAAT-GATCACACGCGATGTA-TATA-CACAAT-TT-G--TTGT-TCATTACTAATAAATCACATGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCTCCTTGTCGTTGTTCATTTTATTGA-A--C-T----CAATTTTTCCA-C-TGT-GTT----------AACGT-AAT-TTATT-TCATGTAAT--G-CA--GCT-TCAATGAATA-CATTCGTC------GC--T--AAAAAACTACCAAT-TCA
gi|3 : ggcGGGTCCCGGCACGTTTTACCAATGCTAACGGTTC-ATTTTAAAGCTTTTACAAGTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTATAAAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCGCATA------TACAGTTAC-----------------T--AAAT---TGTCCTG-T--G-AATATAAA--C-TCGATTGGTTCTTCTAAAACGTA-CCTTATAA-CTTTCTATTTT-------TTTGG-A-ATAACCG--AATGTTCACATCC-G-AG-ATT---------------AGATTT----C-ATCA--AT---G-GGACGTC-ACAA-CCAGTGCAAAAA--ACAATCATG--AGTGAGCGA-ACGA-TTCTTTTGACAGTG-GT-AG-CAAAAATTCTAAA-TGCCATTAC---------CGATTACT
gi|3 : TGAGTCTCGAAAGG-CCGTGGGA-ACGGTGAGTA-AAA-GCGATAATC-GTTCCTACAGTCCAACGTCTCCAGAT-CG-TAATGTCAGTCGCAGAGGAGG-GGGTGGGG--ATTGGG-GGTATCATAATATA----TATC--G--CCAGA-C-----------TA------TG---T------TT----TATTC--TACT------TTGACTACACGCG-TG-----TA-CACAAA-TAT--CTTGT-T-ATTACGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagtctcgaaaggccgtgggaacggtgagtaaaagcgataatcgttcctacagtccaacgtctccagatcgtaatgtcagtcgcagaggagggggtggggattgggggtatcataatatatatcgccagactatgttttattctactttgactacacgcgtgtacacaaatatcttgttattacgaa
gi|4 : gggtcccggcacgttttaccaatgctaacggttcattttaaagcttttacaagttgagtaagtctaataacttcacacgcatcgtataaaaaaactaaataaataggtgttagatggcgcatatacagttactaaattgtcctgtgaatataaactcgattggttcttctaaaacgtaccttataactttctatttttttggaataaccgaatgttcacatccgagattagatttcatcaatgggacgtcacaaccagtgcaaaaaacaatcatgagtgagcgaacgattcttttgacagtggtagcaaaaattctaaatgccattaccgattactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCCTGGTACTTTTTACCAATATTGACAGTCC-AT---GAAGTTTTT----CCTAAGTAAGTCA--ATTATACCATTTA-ACGCATTGTAT-AAAAAAACT-AAAT--CA----A--TAGGTATTCAATGGCTAATA------TCC-ACTACTTCTCTGATA----AAAT--AATT---TGT--TT-T--GTAATAT-AA--CATTGATTTACTTCTCTAAAAAGTA-CCTGATGA-TTTTACAATTT-------AC-GGAA-ATAGCTG--AACGT----ATGC-G-A--GTTT-ATCTCACATA-CGAAACTT----CTAC-A--TT---G-TTACTTC-AT-A-CCAA------TA--ACAATCATG--A--CTGCGG-ACG-TTTCTCTCGACAGTG-AT-AG-CAAACA--TTCTT-AACCATTACTAGTCCCCACGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGTGA--TTTT-TGAGAATGTGTGG----GTG-TCGGG---GTTTATAGGTTTGGACCTC-AAAAGACAGAGGGA-ACTGCGA
gi|5 : ATTGTTAATA------TTC-GCTACATTTCTAAGA----AAA---------------------A-AATAT-A-----TC---TTA-------AAAATATAACCT--CG--CTTTATATTTT-------ACAC-AA-ATAGCCG--AACTT----ATAC-G-GGAGTTT-ATCTCACATA-CGAGGCTT----C-A--ACAAT---G-TGACATC-AC-A-CCAA------GA--ACAATCGTG--A--CTACAG-AT-ATTTCTTTTGTCACTG-AA-AGGCAA---TTTTCTT-TACAACTAC---------CGATTACTGAG-AGAGGAAGAGATA--ATC-AAAGCG-C-TTTT-TGAGAATGTATGG----GCA-TCAGG-CAG--TATAAGTTTGAAACTCGGAGGGG-CGAAAGA-ACTGCGAGTAGAAA--TGATAAT-TGG-CTTAGAACTGAACGTCCCCAGaaag
gi|6 : TTACAACCCAACGTCAACAGAT-CG-TAATGTCAGTTATA---GAAA-GG-TGGGG--A----G-AATATCATGGTTTG----TTTTTTC--AAAGA-CGTAAA-TGCATTA------CA---T------AT----TTC-C--CCCTTCTAAATTGACTACATGCG-TGTA-TATA-CATAAT-GT-G-CTTGT-T-ATTACTAATAAACCACAATTAGACATAGGTCTATA--------CCCCCCTCACCTTGT-GTTGC---TTTTATTGA-AATCAT----TTTTTTTTCCATTGTGTAGTTGTTTTTGTTAAAC-TAAAA-TTA-T-TCATGT-AT--GACAT-GTT-TCAATG--TA-CATTTGTCACATAAAC--TTAAAAAAAATAACAA--TCACATGAAAGTTTAGAGAA
gi|7 : AA-AACT-AAATCTAACGTTA--CAGTTAT-AGATGGCGAATACATGTATAA-GCTACTTTTATAAAACCAAAAAT--AATT---TGT--TT-TAGG-AATAT-----------------------AAAC-------T-CGA-TTTTTTATTTA-------ACGG-AA-ATAGCCG--AACGT----ATGC-G-AGAGATT-ATCTCACATG-CGAGCCTT----C-AACA--GT---G-TGACATC-AT-A-CCCG------TAATACAATCATG--A--CTGCGA-CTGA-TTCATTTGA-AGTG-AT-AG-TAAAAATTCTTTTATACCATTAC---------CGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGCGA--TTTT-TGTGAACGCATAATTATGTA-TCGGGCC
gi|8 : aataggAA-ATACCCG--AGTGT----ATGC-G-AT-ATTTTATCTCACATA-CGATACTT------A--A--ACATAG-TGACGTC-AA-ATTCAG------AAC-ACAATCATG--A--CCGTAA-GCAA-TTCGTATGACAGTG-AT-AA-CAGACGTT---TT-TATCATATC---------CAATTACTGAtta
gi|8 : GAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGAacttatggggatcagggctgataggagggaactgaatagaagtaataatcggcctacaacccaatgttcccagacagtgataacagac
gi|9 : aaatacccgagtgtatgcgatattttatctcacatacgatacttaaacatagtgacgtcaaattcagaacacaatcatgaccgtaagcaattcgtatgacagtgataacagacgtttttatcatatccaattactgaacttatggggatcagggctgatagCCCCCCCCCCCTCCCCATTTGT-GTTGT---TTTTAAGAA-A--T-T----GAATTTTT-CATA-TGC-G------------AA----------------------------AT-GCTATC-ATG--TA-CATTTGTT------AC--TTGAAGAAAAGACCTATCTCAC----AACT--------TCAGAAGTGTCAATT-TATAAAGAGAAAGTTACAAAA-GTAGAA---CTGTGACAGGGTTTAATATTGTCCTGCAA-ATTGT-TTGAGCAAA-TGATTCTAAAATTcagtgataacagac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTTTTAGCAGCCTTATAAAATGACCACTTGTGAGATACTAGCTTTTAAAATGAAACACTTTGTGAAGTACTAAT
Unaligned ( gi|17 ): TTTAGCAAGTTTTTAAAATGATCACTTGTGAGATACTAA
Alignments
lowQualScore : 111 1111 11111 1111 111111 1111 111 22222222 3333333 222222222222 1111 11 44444444444444444 3333333333 111 222222222 222 11 1111 222222 1 11 1 1 11 222 11 333333333 22222 11111 111 444444444444444444444444 1111 111 111 2222 1 111 1 9999999999999999999999999999999999999 3333333 1 1 22222222222 1 11 1 3333333333 11 1 444444444 2222 1 1 1
lowQualScore : 6 111 4444 1 33333 6 2 6 5 5 77 2222 77 0 5 1 666666 0 5 0 5 0 2222 77 3 000 55555555 5 0000000 0 6666666 6 5 444 5 1 111111111111 5 66 0000 5 5 11 5 3 55 99999999999999999 5 0 5 55 5 0000000000 66 66 1 5 444 5 5 5 11 1 2 5 000000000 111 444 99 6 1 66 6 1 4444 6 111111 1 3 5 6 3 44 7 1 2 0 00 8 555 8 22 555555555 1 0 00000 77777 1 8 000 1 888888888888888888888888 5555 0 1 0 8 222 8 0 8 888 8 8 0 5555 1 0 777 5 0000000000000000000000000000000000000 6 4444444 3 0 3 0 55555555555 0 3 33 0 0000000000 44 33 8888 7 3 111111111 4444 7 3 0 3 3 1 1
lowQualScore : . ... .... . ..... . . . . . .. .... .. . . . ...... . . . . . .... .. . ... ........ . ....... . ....... . . ... . . ............ . .. .... . . .. . . .. ................. . . . .. . .......... .. .. . . ... . . . .. . . . ......... ... ... .. . . .. . . .... . ...... . . . . . .. . . . . .. . ... . .. ......... . . ..... ..... . . ... . ........................ .... . . . . ... . . . ... . . . .... . . ... . ..................................... . ....... . . . . ........... . . .. . .......... .. .. .... . . ......... .... . . . . . . .
lowQualScore : 7 777 2222 7 77777 7 5 7 7 7 99 1111 99 4 1 6 444444 3 7 4 3 3 1111 99 0 000 44444444 7 7777777 7 7777777 3 7 333 7 0 777777777777 0 99 6666 0 0 44 0 1 88 00000000000000000 0 2 0 22 0 1111111111 99 99 0 0 000 0 0 0 77 7 3 7 000000000 222 333 22 7 0 55 7 0 2222 7 000000 4 2 7 6 7 00 7 0 0 7 88 0 000 0 88 222222222 0 8 22222 00000 0 0 000 0 666666666666666666666666 0000 8 0 8 0 444 0 8 0 666 0 0 6 1111 2 0 555 5 5555555555555555555555555555555555555 5 8888888 2 0 2 0 55555555555 0 2 88 0 5555555555 00 22 3333 3 3 777777777 3333 3 3 7 3 3 0 0
consensus : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTT-------ACGGGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----C-A--A--GC---G-TGACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAATTTTCTT-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCG-TAATGTCAGTCGCA---GAAA-GGGCGGGG--A----G-AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA------CA---T------TT----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NTTTTTTTCCATT-TG----------TGTTGAAC-T-AAA-TTATT-TCATGT-AT--G-C---AT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
Reference ( family-5074 ) : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTT-------ACGGGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----C-A--A--GC---G-TGACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAATTTTCTT-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCG-TAATGTCAGTCGCA---GAAA-GGGCGGGG--A----G-AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA------CA---T------TT----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NNNTTTTTCCATT-TG----------TGTTGAAC-T-AAA-TTATT-TCATGT-AT--G-C---AT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
gi|1 : GGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGATTAAGTCT--T--ATAAC-TTCACACGCATCAAAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTTGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AAATTTGTAT--TT-T--G-AATATAAA--C-TCGATTTATTCTTAAAAAACATA-CCTTACAA-CTATGTACTTTACGTACCACGAGAACATAGCCGGAAACGT----ATGC-G-AG-GTTT-ATATCCTATG-CGAGGATTAGGAC-A--A--GC---GATGACGTCTAC-A-CCAG------TAT-ACAATCATGCAA--CAGCGA-ACGATCTCTATTGACAGTG-AT-GG-CAATAATTTTCTT-TACCATTAC---------CGATCGCTGAGAAGAGAAA-TTACAACATGAAAAGCGATGTTTT-TGTGAACGCATAG----GTA-TCGGGCCAATTAATAGGTTTGAGCCTCGAAAAGGCCGAGGGACATTACGAGTAAAAA-GCGATAATCCGGCCTTACAACCCGACGTCCACAGATGCGTTAATGTCCGTCACA---GAAA-GGTTGGGG--A----ATAATATCGTGG-TTG----TTTC--CAAAAAGA-CGTAAC-TGCTTTAATCTTCTAAACT------TT----TTTTCTTCCTTTCTAAATTGTCTACACGCG-TGCAGTATATCACAATCTTTGCCTTGTAT-ATTACTAATAAATCACAAGTAGACGTAGGTCTA----CCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTA-TGACA--C-TCAAAATTTTTTTCCATT-TG----------TGTTGAACTT-AAATTTATTCTCATGT-ATTGG-C---ATCGCT-TCAATG--TACCATTCGTC------GCCATTAAAGAAAATCCCAAT-TCACATGGAGCTTTAGAGAATCAGAAGTGTCATTTGTAGAAAGATAAAG-TAC-AAATGTAAAAGACTTGTGACAGTG-TTAATATTTTCCTGCAATATCGTCTTCAGCAAATTTAATCTAAAATT
gi|10 : cAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGA-GCG-CACTGTCAGTCGTA---GAGA-GCACAGGG--A-------ATATCTTGATTT-----TTTT--C--ATAGA-CGTAAA-CGCTTTA------CA---T------CTGGGGTTTT-------TCTAATTTGACTTTACACA-TGGA-TATA-CTT--T-TTTG-CTTCT-T-ATTGCGAATAAGTCACAAGT
gi|11 : TTTTCT-AAA----ACAT--GATT---TGT--AT-TAGG-AATAT-CAT-C-TTGACATATTCTTCTAAAACATA-CC-TATAA-TTTCATATTTT-------A-GGGAA-ATAGATA--AATGT----ATAC-GCAA-TTTT-ATCTCACAAC-CGAGACTT----G-A--A--------------------------------TA--ACATTCATA--A--CTGTGC-AC-CTTTCTTTTTACGCTA-AT-AG-AAAA
gi|12 : tttCGGCACTTTTTAACAATACATACATTTC-AT---GAAGCTTTT----T--GAGTAAGTCT--A--ATAGA-TTTACACAAATCGTAT-AAAA--ACT-AAAT--CA----A--CAGGCGTTAGTTAGCTAATA------TAC-GCTACT
gi|13 : gctgGGTCCCAGGACTTTTAACCAATATTGATAGTTC-AT---GAAGCTTTT----TTAAAGTAAATCG--A--ATAAT-TTTAAACGCATCCTAT-AAAA-AACG-AAAT--AG----A--TAGGTATTAAAT
gi|14 : TCTGAAGTGTCATTT-TAGAAAGAGAAAG---------ATAGAA---ATGTGATAGTATTTAATATATTCCTGCAA-ATTGT-TTGAGTAAA-
gi|16 : gagaagttaactgacaacttaatTTAC---------C-ATTACTGAGA-----------------G-AGAGCTAT-TTTT--GAAAACACATGG----GTA-TCA---TAACTTATAGATTTGAGCCTCGAA
gi|2 : tctGGTCGCGGCACTTTTTACCAATACTGACAGTTCCAT---GAAGCTTTT----TTTGATTAAGTCTTTA--TTAAC-TTCTCA-GCAGCAAAT-AAAA-AACTCAAAT--AA----AAATAGGTTCT-GATG-CAAATA-------GC-G-TACTTTTCTGAAA----AAATTAAAGT---TGTA-TTAT--G-AATAT-AAAAC-TCGATTTATGCTTTTAAAACATA-CCTTACAAACTATGTACTTT-------ACGCAAA-ATAGCCG--AACGT----ATGCTG-AG-AGTT-ATATC---TAGCGAGACTT----C-A-----GCA--G-TGACGTC-AC-A-CCAG------AATTACAATCATG--A--CAGCGACACGATT-CTTTTGACAGTGTATCGG-CACAAAATTTCTT-TATC--TAC----------GATCGCTGAGAC-AGAAAGTTACA--ATG-GAAG--AT-TTTTGTGA---CGCATAG----TTAATCGG-CC--TTAATAGGTTTGAGCCTCGAAAGG-CCGAGGGA-AATACGAGTAAAAAAGCGATA--CCGGCCT-ACAACTCA-CGTCCACAGATGCG-TAATGTCAGTCACATC-AAAATGGGGGGGGCAA----T-AATAGCTTGGTTTGAGATTTTC--C--AAAGAACGTAAAACGCTTTA------CA---TCCTTCTTT----TTTTT--CCCTTCTAAAT-GATCACACGCGATGTA-TATA-CACAAT-TT-G--TTGT-TCATTACTAATAAATCACATGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCTCCTTGTCGTTGTTCATTTTATTGA-A--C-T----CAATTTTTCCA-C-TG----------TGTT-AACGT-AAT-TTATT-TCATGTAAT--G-C---A--GCT-TCAATGAATA-CATTCGTC------GC--T--AAAAAACTACCAAT-TCA
gi|3 : ggcGGGTCCCGGCACGTTTTACCAATGCTAACGGTTC-ATTTTAAAGCTTTTACAAGTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTATAAAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCGCATA------TACAGTTAC-----------------T--AAAT---TGTCCTG-T--G-AATATAAA--C-TCGATTGGTTCTTCTAAAACGTA-CCTTATAA-CTTTCTATTTT-------TTTGG-A-ATAACCG--AATGTTCACATCC-G-AG-ATT---------------AGATTT----C-ATCA--AT---G-GGACGTC-ACAA-CCAGTGCAAAAA--ACAATCATG--AGTGAGCGA-ACGA-TTCTTTTGACAGTG-GT-AG-CAAAAATTCTAAA-TGCCATTAC---------CGATTACT
gi|3 : TGAGTCTCGAAAGG-CCGTGGGA-ACGGTGAGTA-AAA-GCGATAATC-GTTCCTACAGTCCAACGTCTCCAGAT-CG-TAATGTCAGTCGCAGAGGAGG-GGGTGGGG--ATTGGG-GGTATCATAATATA----TATC--G--CCAGA-C-----------TA------TG---T------TT----TATTC--TACT------TTGACTACACGCG-TG-----TA-CACAAA-TAT--CTTGT-T-ATTACGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagtctcgaaaggccgtgggaacggtgagtaaaagcgataatcgttcctacagtccaacgtctccagatcgtaatgtcagtcgcagaggagggggtggggattgggggtatcataatatatatcgccagactatgttttattctactttgactacacgcgtgtacacaaatatcttgttattacgaa
gi|4 : gggtcccggcacgttttaccaatgctaacggttcattttaaagcttttacaagttgagtaagtctaataacttcacacgcatcgtataaaaaaactaaataaataggtgttagatggcgcatatacagttactaaattgtcctgtgaatataaactcgattggttcttctaaaacgtaccttataactttctatttttttggaataaccgaatgttcacatccgagattagatttcatcaatgggacgtcacaaccagtgcaaaaaacaatcatgagtgagcgaacgattcttttgacagtggtagcaaaaattctaaatgccattaccgattactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCCTGGTACTTTTTACCAATATTGACAGTCC-AT---GAAGTTTTT----CCTAAGTAAGTCA--ATTATACCATTTA-ACGCATTGTAT-AAAAAAACT-AAAT--CA----A--TAGGTATTCAATGGCTAATA------TCC-ACTACTTCTCTGATA----AAAT--AATT---TGT--TT-T--GTAATAT-AA--CATTGATTTACTTCTCTAAAAAGTA-CCTGATGA-TTTTACAATTT-------AC-GGAA-ATAGCTG--AACGT----ATGC-G-A--GTTT-ATCTCACATA-CGAAACTT----CTAC-A--TT---G-TTACTTC-AT-A-CCAA------TA--ACAATCATG--A--CTGCGG-ACG-TTTCTCTCGACAGTG-AT-AG-CAAACA--TTCTT-AACCATTACTAGTCCCCACGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGTGA--TTTT-TGAGAATGTGTGG----GTG-TCGGG---GTTTATAGGTTTGGACCTC-AAAAGACAGAGGGA-ACTGCGA
gi|5 : ATTGTTAATA------TTC-GCTACATTTCTAAGA----AAA---------------------A-AATAT-A-----TC---TTA-------AAAATATAACCT--CG--CTTTATATTTT-------ACAC-AA-ATAGCCG--AACTT----ATAC-G-GGAGTTT-ATCTCACATA-CGAGGCTT----C-A--ACAAT---G-TGACATC-AC-A-CCAA------GA--ACAATCGTG--A--CTACAG-AT-ATTTCTTTTGTCACTG-AA-AGGCAA---TTTTCTT-TACAACTAC---------CGATTACTGAG-AGAGGAAGAGATA--ATC-AAAGCG-C-TTTT-TGAGAATGTATGG----GCA-TCAGG-CAG--TATAAGTTTGAAACTCGGAGGGG-CGAAAGA-ACTGCGAGTAGAAA--TGATAAT-TGG-CTTAGAACTGAACGTCCCCAGaaag
gi|6 : TTACAACCCAACGTCAACAGAT-CG-TAATGTCAGTTATA---GAAA-GG-TGGGG--A----G-AATATCATGGTTTG----TTTTTTC--AAAGA-CGTAAA-TGCATTA------CA---T------AT----TTC-C--CCCTTCTAAATTGACTACATGCG-TGTA-TATA-CATAAT-GT-G-CTTGT-T-ATTACTAATAAACCACAATTAGACATAGGTCTATA--------CCCCCCTCACCTTGT-GTTGC---TTTTATTGA-AATCAT----TTTTTTTTCCATTGTGTAGTTGTTTTTGTTAAAC-TAAAA-TTA-T-TCATGT-AT--GAC---AT-GTT-TCAATG--TA-CATTTGTCACATAAAC--TTAAAAAAAATAACAA--TCACATGAAAGTTTAGAGAA
gi|7 : AA-AACT-AAATCTAACGTTA--CAGTTAT-AGATGGCGAATACATGTATAA-GCTACTTTTATAAAACCAAAAAT--AATT---TGT--TT-TAGG-AATAT-----------------------AAAC-------T-CGA-TTTTTTATTTA-------ACGG-AA-ATAGCCG--AACGT----ATGC-G-AGAGATT-ATCTCACATG-CGAGCCTT----C-AACA--GT---G-TGACATC-AT-A-CCCG------TAATACAATCATG--A--CTGCGA-CTGA-TTCATTTGA-AGTG-AT-AG-TAAAAATTCTTTTATACCATTAC---------CGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGCGA--TTTT-TGTGAACGCATAATTATGTA-TCGGGCC
gi|8 : aataggAA-ATACCCG--AGTGT----ATGC-G-AT-ATTTTATCTCACATA-CGATACTT------A--A--ACATAG-TGACGTC-AA-ATTCAG------AAC-ACAATCATG--A--CCGTAA-GCAA-TTCGTATGACAGTG-AT-AA-CAGACGTT---TT-TATCATATC---------CAATTACTGAtta
gi|8 : GAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGAacttatggggatcagggctgataggagggaactgaatagaagtaataatcggcctacaacccaatgttcccagacagtgataacagac
gi|9 : aaatacccgagtgtatgcgatattttatctcacatacgatacttaaacatagtgacgtcaaattcagaacacaatcatgaccgtaagcaattcgtatgacagtgataacagacgtttttatcatatccaattactgaacttatggggatcagggctgatag-CCCCCCCCCCCTCCCCATTTGT-GTTGT---TTTTA-AGA-A------------------------------------ATTGAAT-T--------TT-TCA--T-AT--G-CGAAAT-GCTATC-ATG--TA-CATTTGTT------AC--TTGAAGAAAAGACCTATCTCAC----AACT--------TCAGAAGTGTCAATT-TATAAAGAGAAAGTTACAAAA-GTAGAA---CTGTGACAGGGTTTAATATTGTCCTGCAA-ATTGT-TTGAGCAAA-TGATTCTAAAATTcagtgataacagac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTTTTAGCAGCCTTATAAAATGACCACTTGTGAGATACTAGCTTTTAAAATGAAACACTTTGTGAAGTACTAAT
Unaligned ( gi|17 ): TTTAGCAAGTTTTTAAAATGATCACTTGTGAGATACTAA
Alignments
lowQualScore : 111 1111 11111 1111 111111 1111 111 22222222 3333333 222222222222 1111 11 44444444444444444 3333333333 111 222222222 222 11 1111 222222 1 11 1 1 11 222 11 333333333 22222 11111 111 444444444444444444444444 1111 111 111 2222 1 111 1 8888888888888888888888888888888888888 3333333 1 1 22222222222 1 11 1 3333333333 11 1 444444444 2222 1 1 1
lowQualScore : 6 111 4444 1 33333 6 2 6 5 5 77 2222 77 0 5 1 666666 0 5 0 5 0 2222 77 3 000 55555555 5 0000000 0 6666666 6 5 444 5 1 111111111111 5 66 0000 5 5 11 5 3 55 99999999999999999 5 0 5 55 5 0000000000 66 66 1 5 444 5 5 5 11 1 2 5 000000000 111 444 99 6 1 66 6 1 4444 6 111111 1 3 5 6 3 44 7 1 2 0 00 8 555 8 22 555555555 1 0 00000 77777 1 8 000 1 888888888888888888888888 5555 0 1 0 8 222 8 0 8 888 8 8 0 5555 1 0 777 5 8888888888888888888888888888888888888 6 4444444 3 0 3 0 55555555555 0 3 33 0 0000000000 44 33 8888 7 3 111111111 4444 7 3 0 3 3 1 1
lowQualScore : . ... .... . ..... . . . . . .. .... .. . . . ...... . . . . . .... .. . ... ........ . ....... . ....... . . ... . . ............ . .. .... . . .. . . .. ................. . . . .. . .......... .. .. . . ... . . . .. . . . ......... ... ... .. . . .. . . .... . ...... . . . . . .. . . . . .. . ... . .. ......... . . ..... ..... . . ... . ........................ .... . . . . ... . . . ... . . . .... . . ... . ..................................... . ....... . . . . ........... . . .. . .......... .. .. .... . . ......... .... . . . . . . .
lowQualScore : 7 777 2222 7 77777 7 5 7 7 7 99 1111 99 4 1 6 444444 3 7 4 3 3 1111 99 0 000 44444444 7 7777777 7 7777777 3 7 333 7 0 777777777777 0 99 6666 0 0 44 0 1 88 00000000000000000 0 2 0 22 0 1111111111 99 99 0 0 000 0 0 0 77 7 3 7 000000000 222 333 22 7 0 55 7 0 2222 7 000000 4 2 7 6 7 00 7 0 0 7 88 0 000 0 88 222222222 0 8 22222 00000 0 0 000 0 666666666666666666666666 0000 8 0 8 0 444 0 8 0 666 0 0 6 1111 2 0 555 5 5555555555555555555555555555555555555 5 8888888 2 0 2 0 55555555555 0 2 88 0 5555555555 00 22 3333 3 3 777777777 3333 3 3 7 3 3 0 0
consensus : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTT-------ACGGGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----C-A--A--GC---G-TGACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAATTTTCTT-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCG-TAATGTCAGTCGCA---GAAA-GGGCGGGG--A----G-AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA------CA---T------TT----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NTTTTTTTCCATT-TG----------TGTTGAAC-T-AAA-TTATT-TCATGT-AT--G-C---AT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
Reference ( family-5074 ) : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTT-------ACGGGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----C-A--A--GC---G-TGACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAATTTTCTT-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCG-TAATGTCAGTCGCA---GAAA-GGGCGGGG--A----G-AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA------CA---T------TT----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NTTTTTTTCCATT-TG----------TGTTGAAC-T-AAA-TTATT-TCATGT-AT--G-C---AT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
gi|1 : GGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGATTAAGTCT--T--ATAAC-TTCACACGCATCAAAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTTGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AAATTTGTAT--TT-T--G-AATATAAA--C-TCGATTTATTCTTAAAAAACATA-CCTTACAA-CTATGTACTTTACGTACCACGAGAACATAGCCGGAAACGT----ATGC-G-AG-GTTT-ATATCCTATG-CGAGGATTAGGAC-A--A--GC---GATGACGTCTAC-A-CCAG------TAT-ACAATCATGCAA--CAGCGA-ACGATCTCTATTGACAGTG-AT-GG-CAATAATTTTCTT-TACCATTAC---------CGATCGCTGAGAAGAGAAA-TTACAACATGAAAAGCGATGTTTT-TGTGAACGCATAG----GTA-TCGGGCCAATTAATAGGTTTGAGCCTCGAAAAGGCCGAGGGACATTACGAGTAAAAA-GCGATAATCCGGCCTTACAACCCGACGTCCACAGATGCGTTAATGTCCGTCACA---GAAA-GGTTGGGG--A----ATAATATCGTGG-TTG----TTTC--CAAAAAGA-CGTAAC-TGCTTTAATCTTCTAAACT------TT----TTTTCTTCCTTTCTAAATTGTCTACACGCG-TGCAGTATATCACAATCTTTGCCTTGTAT-ATTACTAATAAATCACAAGTAGACGTAGGTCTA----CCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTA-TGACA--C-TCAAAATTTTTTTCCATT-TG----------TGTTGAACTT-AAATTTATTCTCATGT-ATTGG-C---ATCGCT-TCAATG--TACCATTCGTC------GCCATTAAAGAAAATCCCAAT-TCACATGGAGCTTTAGAGAATCAGAAGTGTCATTTGTAGAAAGATAAAG-TAC-AAATGTAAAAGACTTGTGACAGTG-TTAATATTTTCCTGCAATATCGTCTTCAGCAAATTTAATCTAAAATT
gi|10 : cAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGA-GCG-CACTGTCAGTCGTA---GAGA-GCACAGGG--A-------ATATCTTGATTT-----TTTT--C--ATAGA-CGTAAA-CGCTTTA------CA---T------CTGGGGTTTT-------TCTAATTTGACTTTACACA-TGGA-TATA-CTT--T-TTTG-CTTCT-T-ATTGCGAATAAGTCACAAGT
gi|11 : TTTTCT-AAA----ACAT--GATT---TGT--AT-TAGG-AATAT-CAT-C-TTGACATATTCTTCTAAAACATA-CC-TATAA-TTTCATATTTT-------A-GGGAA-ATAGATA--AATGT----ATAC-GCAA-TTTT-ATCTCACAAC-CGAGACTT----G-A--A--------------------------------TA--ACATTCATA--A--CTGTGC-AC-CTTTCTTTTTACGCTA-AT-AG-AAAA
gi|12 : tttCGGCACTTTTTAACAATACATACATTTC-AT---GAAGCTTTT----T--GAGTAAGTCT--A--ATAGA-TTTACACAAATCGTAT-AAAA--ACT-AAAT--CA----A--CAGGCGTTAGTTAGCTAATA------TAC-GCTACT
gi|13 : gctgGGTCCCAGGACTTTTAACCAATATTGATAGTTC-AT---GAAGCTTTT----TTAAAGTAAATCG--A--ATAAT-TTTAAACGCATCCTAT-AAAA-AACG-AAAT--AG----A--TAGGTATTAAAT
gi|14 : TCTGAAGTGTCATTT-TAGAAAGAGAAAG---------ATAGAA---ATGTGATAGTATTTAATATATTCCTGCAA-ATTGT-TTGAGTAAA-
gi|16 : gagaagttaactgacaacttaatTTAC---------C-ATTACTGAGA-----------------G-AGAGCTAT-TTTT--GAAAACACATGG----GTA-TCA---TAACTTATAGATTTGAGCCTCGAA
gi|2 : tctGGTCGCGGCACTTTTTACCAATACTGACAGTTCCAT---GAAGCTTTT----TTTGATTAAGTCTTTA--TTAAC-TTCTCA-GCAGCAAAT-AAAA-AACTCAAAT--AA----AAATAGGTTCT-GATG-CAAATA-------GC-G-TACTTTTCTGAAA----AAATTAAAGT---TGTA-TTAT--G-AATAT-AAAAC-TCGATTTATGCTTTTAAAACATA-CCTTACAAACTATGTACTTT-------ACGCAAA-ATAGCCG--AACGT----ATGCTG-AG-AGTT-ATATC---TAGCGAGACTT----C-A-----GCA--G-TGACGTC-AC-A-CCAG------AATTACAATCATG--A--CAGCGACACGATT-CTTTTGACAGTGTATCGG-CACAAAATTTCTT-TATC--TAC----------GATCGCTGAGAC-AGAAAGTTACA--ATG-GAAG--AT-TTTTGTGA---CGCATAG----TTAATCGG-CC--TTAATAGGTTTGAGCCTCGAAAGG-CCGAGGGA-AATACGAGTAAAAAAGCGATA--CCGGCCT-ACAACTCA-CGTCCACAGATGCG-TAATGTCAGTCACATC-AAAATGGGGGGGGCAA----T-AATAGCTTGGTTTGAGATTTTC--C--AAAGAACGTAAAACGCTTTA------CA---TCCTTCTTT----TTTTT--CCCTTCTAAAT-GATCACACGCGATGTA-TATA-CACAAT-TT-G--TTGT-TCATTACTAATAAATCACATGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCTCCTTGTCGTTGTTCATTTTATTGA-A--C-T----CAATTTTTCCA-C-TG----------TGTT-AACGT-AAT-TTATT-TCATGTAAT--G-C---A--GCT-TCAATGAATA-CATTCGTC------GC--T--AAAAAACTACCAAT-TCA
gi|3 : ggcGGGTCCCGGCACGTTTTACCAATGCTAACGGTTC-ATTTTAAAGCTTTTACAAGTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTATAAAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCGCATA------TACAGTTAC-----------------T--AAAT---TGTCCTG-T--G-AATATAAA--C-TCGATTGGTTCTTCTAAAACGTA-CCTTATAA-CTTTCTATTTT-------TTTGG-A-ATAACCG--AATGTTCACATCC-G-AG-ATT---------------AGATTT----C-ATCA--AT---G-GGACGTC-ACAA-CCAGTGCAAAAA--ACAATCATG--AGTGAGCGA-ACGA-TTCTTTTGACAGTG-GT-AG-CAAAAATTCTAAA-TGCCATTAC---------CGATTACT
gi|3 : TGAGTCTCGAAAGG-CCGTGGGA-ACGGTGAGTA-AAA-GCGATAATC-GTTCCTACAGTCCAACGTCTCCAGAT-CG-TAATGTCAGTCGCAGAGGAGG-GGGTGGGG--ATTGGG-GGTATCATAATATA----TATC--G--CCAGA-C-----------TA------TG---T------TT----TATTC--TACT------TTGACTACACGCG-TG-----TA-CACAAA-TAT--CTTGT-T-ATTACGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagtctcgaaaggccgtgggaacggtgagtaaaagcgataatcgttcctacagtccaacgtctccagatcgtaatgtcagtcgcagaggagggggtggggattgggggtatcataatatatatcgccagactatgttttattctactttgactacacgcgtgtacacaaatatcttgttattacgaa
gi|4 : gggtcccggcacgttttaccaatgctaacggttcattttaaagcttttacaagttgagtaagtctaataacttcacacgcatcgtataaaaaaactaaataaataggtgttagatggcgcatatacagttactaaattgtcctgtgaatataaactcgattggttcttctaaaacgtaccttataactttctatttttttggaataaccgaatgttcacatccgagattagatttcatcaatgggacgtcacaaccagtgcaaaaaacaatcatgagtgagcgaacgattcttttgacagtggtagcaaaaattctaaatgccattaccgattactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCCTGGTACTTTTTACCAATATTGACAGTCC-AT---GAAGTTTTT----CCTAAGTAAGTCA--ATTATACCATTTA-ACGCATTGTAT-AAAAAAACT-AAAT--CA----A--TAGGTATTCAATGGCTAATA------TCC-ACTACTTCTCTGATA----AAAT--AATT---TGT--TT-T--GTAATAT-AA--CATTGATTTACTTCTCTAAAAAGTA-CCTGATGA-TTTTACAATTT-------AC-GGAA-ATAGCTG--AACGT----ATGC-G-A--GTTT-ATCTCACATA-CGAAACTT----CTAC-A--TT---G-TTACTTC-AT-A-CCAA------TA--ACAATCATG--A--CTGCGG-ACG-TTTCTCTCGACAGTG-AT-AG-CAAACA--TTCTT-AACCATTACTAGTCCCCACGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGTGA--TTTT-TGAGAATGTGTGG----GTG-TCGGG---GTTTATAGGTTTGGACCTC-AAAAGACAGAGGGA-ACTGCGA
gi|5 : ATTGTTAATA------TTC-GCTACATTTCTAAGA----AAA---------------------A-AATAT-A-----TC---TTA-------AAAATATAACCT--CG--CTTTATATTTT-------ACAC-AA-ATAGCCG--AACTT----ATAC-G-GGAGTTT-ATCTCACATA-CGAGGCTT----C-A--ACAAT---G-TGACATC-AC-A-CCAA------GA--ACAATCGTG--A--CTACAG-AT-ATTTCTTTTGTCACTG-AA-AGGCAA---TTTTCTT-TACAACTAC---------CGATTACTGAG-AGAGGAAGAGATA--ATC-AAAGCG-C-TTTT-TGAGAATGTATGG----GCA-TCAGG-CAG--TATAAGTTTGAAACTCGGAGGGG-CGAAAGA-ACTGCGAGTAGAAA--TGATAAT-TGG-CTTAGAACTGAACGTCCCCAGaaag
gi|6 : TTACAACCCAACGTCAACAGAT-CG-TAATGTCAGTTATA---GAAA-GG-TGGGG--A----G-AATATCATGGTTTG----TTTTTTC--AAAGA-CGTAAA-TGCATTA------CA---T------AT----TTC-C--CCCTTCTAAATTGACTACATGCG-TGTA-TATA-CATAAT-GT-G-CTTGT-T-ATTACTAATAAACCACAATTAGACATAGGTCTATA--------CCCCCCTCACCTTGT-GTTGC---TTTTATTGA-AATCAT----TTTTTTTTCCATTGTGTAGTTGTTTTTGTTAAAC-TAAAA-TTA-T-TCATGT-AT--GAC---AT-GTT-TCAATG--TA-CATTTGTCACATAAAC--TTAAAAAAAATAACAA--TCACATGAAAGTTTAGAGAA
gi|7 : AA-AACT-AAATCTAACGTTA--CAGTTAT-AGATGGCGAATACATGTATAA-GCTACTTTTATAAAACCAAAAAT--AATT---TGT--TT-TAGG-AATAT-----------------------AAAC-------T-CGA-TTTTTTATTTA-------ACGG-AA-ATAGCCG--AACGT----ATGC-G-AGAGATT-ATCTCACATG-CGAGCCTT----C-AACA--GT---G-TGACATC-AT-A-CCCG------TAATACAATCATG--A--CTGCGA-CTGA-TTCATTTGA-AGTG-AT-AG-TAAAAATTCTTTTATACCATTAC---------CGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGCGA--TTTT-TGTGAACGCATAATTATGTA-TCGGGCC
gi|8 : aataggAA-ATACCCG--AGTGT----ATGC-G-AT-ATTTTATCTCACATA-CGATACTT------A--A--ACATAG-TGACGTC-AA-ATTCAG------AAC-ACAATCATG--A--CCGTAA-GCAA-TTCGTATGACAGTG-AT-AA-CAGACGTT---TT-TATCATATC---------CAATTACTGAtta
gi|8 : GAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGAacttatggggatcagggctgataggagggaactgaatagaagtaataatcggcctacaacccaatgttcccagacagtgataacagac
gi|9 : aaatacccgagtgtatgcgatattttatctcacatacgatacttaaacatagtgacgtcaaattcagaacacaatcatgaccgtaagcaattcgtatgacagtgataacagacgtttttatcatatccaattactgaacttatggggatcagggctgatag-CCCCCCCCCCCTCCCCATTTGT-GTTGT---TTTTA-AGA-A------------------------------------ATTGAAT-T--------TT-TCA--T-AT--G-CGAAAT-GCTATC-ATG--TA-CATTTGTT------AC--TTGAAGAAAAGACCTATCTCAC----AACT--------TCAGAAGTGTCAATT-TATAAAGAGAAAGTTACAAAA-GTAGAA---CTGTGACAGGGTTTAATATTGTCCTGCAA-ATTGT-TTGAGCAAA-TGATTCTAAAATTcagtgataacagac
blockSeqs : C TTT ACAA T TTA A C A A C CT CGTT AA A T CATGTA A G CCAA TA T . ATTAG T AAAAC TTCTTCT A A TTA A A ACGCA . . TCAC T C GA T A AG CATCAAT . . CA T TGCAAAAA . GT T C GAT T C G AA A T A TAGTCCCCA AC GTT . . C T G A TTAT A TAAC T A . C G AA C C T TG . GAG T AC ATTGGG T GAGAT TTC T A AAC T CATCCTTCTTT TT T A GA . . TG . C TACC T C TCA T AATCATTTTTTTTTCCATTGTGTAGTTGTTTT A GTAAT T . T A GCGAAAT A A AA . ACATAAAC TA TC ATGA T . TTACAAAA A T . . . G T
blockSeqs : . . . T ATT . A . . . . . . A A . . G . . G . ATTAT . CATC TGCTTTT A . TTA . G TTTGG . . . . . GA . A C CTACATT . . C . AATT . . A . CT . . . AA T C . . AG GTG . . T T . G . . GCAG A G . T A A T C T G . TC . GG CAAT T A C A . AC T CATCTGGGG TC A . TA . . G . . TA A . . T ACTCAATTTTTCCACTG G TAAAA T . T . GACAT . A . . GC TG T . . . . C T . . .
blockSeqs : . . . T A . C . . . . . . A G . . A . . A . CCTGT . AAAC TTCTTCT G . TGA . C AGGG . . . . . A . A A CAACAAT . . T . TAAT . . A . GA . . . AC T T . . AG GAG . . C C . G . . CCT T . . C G A . T T T . . . GT AG A G C C . AT A TGTTT T A . TA . . T . . C . . . A . T . . . . GCA . . . . AC . .
blockSeqs : . . . C A . C . . . . . . C T . . A . . T . TTTAG . AACA CTTCTCT G . TA . A ACGG . . . . . G . A A CAACAGT . . C . AAC . . T . GT . . . AA T T . . AG GTG . . C . . G . . GGT T . . C G . . C . T . . . T A A . G A . . . CATAT C . . . . . G . .
blockSeqs : . . . . A . . . . . . . . A T . . . . . T . TTT . A . A . T . A ACAC . . . . . G . A G AAACATA . . T . TA . . T . AT . . . AC T C . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . G . . . . . . . . . . . . . T . T ACGG . . . . . T . . A CAGCA . . A . TA . . T . GA . . . . . . . . . . .
blockSeqs : . . . . . . . . . GAA . . . . GA . . C . AA . . . .
blockSeqCons : *** NTTAN*** ACGG******** ** CAACANT********** TA******** ** GN* AG* GTG ** T* NNC*** T* A******** C**** CGTCT******************* TC** TA* G**
originalCons : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGT--TT-T--G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTT-------ACGGGAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----C-A--A--GC---G-TGACGTC-AC-A-CCAG------NA--ACAATCATG--A--CNGCGA-ACGATTTCTTTTGACAGTG-AT-AG-CAAAAATTTTCTT-TACCATTAC---------CGATTACTGAGAAGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCCAGTTTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGATGCG-TAATGTCAGTCGCA---GAAA-GGGCGGGG--A----G-AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA------CA---T------TT----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NTTTTTTTCCATT-TG----------TGTTGAAC-T-AAA-TTATT-TCATGT-AT--G-C---AT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
finalCons : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANT---TGTNTTAN---G-AATAT-AA--C-TCGATTTATTCTTCTAAAACGTA-CCTTACGA-CTTTNTATTTTACGG--------AA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTTCAACANT----------G-TGACGTC-AC-A-CCAGTA--------ACAATCATG--A--CNGCGA-ACGN-TTCTTTTGACAGTG-AT-AG-CAAAAATTTTCTT-TACCATTAC---------CGATTACTGAGAG-AGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGNNC---TTATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGAT-CG-TAATGTCAGTCGCA---GAAA-GGGCGGGGA--------AATATCNTGGTTTG----TTTCC----AAAGA-CGTAAA-CGCTTTACGTCT-------------------TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAAT-TTG--CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NTTTTTTTCCATT-TG----------TGTTGAAC-T-AAA-TTATT-TCATGT-AT--G-C---AT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTTTTAGCAGCCTTATAAAATGACCACTTGTGAGATACTAGCTTTTAAAATGAAACACTTTGTGAAGTACTAAT
Unaligned ( gi|17 ): TTTAGCAAGTTTTTAAAATGATCACTTGTGAGATACTAA
Alignments
lowQualScore : 111 1111 11111 1111 111111 1111 11 2222222222222222222222 22222222 1111 11 1111 2222222222 222222222 11 1111 11 11 1 1 1 222 11 555555 22222 11111 111 11 5555555555555555555 111 11 2222 1 111 1 8888888888888888888888888888888888888 3333333 1 1 22222222222 1 11 1 3333333333 11 1 444444444 2222 1 1 1
lowQualScore : 6 111 4444 1 33333 6 2 6 5 5 77 2222 77 0 5 1 666666 0 5 0 5 0 2222 33 1 1 1 7777777777777777777777 7 99 5 1 66666666 5 66 0000 5 5 11 5 3 55 0000 2 99 5 0 5 55 5 2222222222 66 66 66 1 5 1 5 5 5 5 1 2 5 000000000 6 444 99 6 1 66 6 2222 5 88888 5 0 66 5 6 3 44 7 1 2 0 3 6 555 22 999999 1 0 00000 77777 1 8 000 1 11 4 8888888888888888888 0 11 8 222 8 0 11 8 8 8 0 5555 1 0 777 5 8888888888888888888888888888888888888 6 4444444 3 0 3 0 55555555555 0 3 33 0 0000000000 44 33 8888 7 3 111111111 4444 7 3 0 3 3 1 1
lowQualScore : . ... .... . ..... . . . . . .. .... .. . . . ...... . . . . . .... .. . . . ...................... . .. . . ........ . .. .... . . .. . . .. .... . .. . . . .. . .......... .. .. .. . . . . . . . . . . ......... . ... .. . . .. . .... . ..... . . .. . . . .. . . . . . . ... .. ...... . . ..... ..... . . ... . .. . ................... . .. . ... . . .. . . . . .... . . ... . ..................................... . ....... . . . . ........... . . .. . .......... .. .. .... . . ......... .... . . . . . . .
lowQualScore : 7 777 2222 7 77777 7 5 7 7 7 99 1111 99 4 1 6 444444 3 7 4 3 3 1111 66 0 0 0 9999999999999999999999 6 99 7 0 44444444 0 99 6666 0 0 44 0 1 88 6666 2 88 0 2 0 22 0 8888888888 99 99 99 0 0 0 0 0 0 0 7 3 7 000000000 7 333 22 7 0 55 7 1111 7 00000 7 7 00 7 6 7 00 7 0 0 7 3 7 000 88 888888 0 8 22222 00000 0 0 000 0 00 6 0000000000000000000 8 88 0 444 0 8 00 0 0 0 6 1111 2 0 555 5 5555555555555555555555555555555555555 5 8888888 2 0 2 0 55555555555 0 2 88 0 5555555555 00 22 3333 3 3 777777777 3333 3 3 7 3 3 0 0
consensus : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AATTTGTNTTATGAATAT-AA--C-TCGATTTATTCTTCTAAAACGTACCTTACGA-CTTTNTATTTTACG--------GAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----CAACANTG-TGACGTC-AC-A-CCAGT------A--A--CAATCATG--A--CNGCGA-ACGAT-TCTTTTGACAGTG-AT-A-GCAAAAATTTTCTT-TACCATTAC---------CGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGGCC--TT-ATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGAT-CG-TAATGTCAGTCGCA---GAAAGGGCGGGGANT---AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA--CGTC-----T-T----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAA--TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NTTTTTTTCCATT-TG----------TGTTGAAC-T-AAA-TTATT-TCATGT-AT--G-C---AT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
Reference ( family-5074 ) : NGGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAAT--AANTTGTNTTANGAATAT-AA--C-TCGATTTATTCTTCTAAAACGTACCTTACGA-CTTTNTATTTTACG--------GAA-ATAGCCG--AACGT----ATGC-G-AG-GTTT-ATCTCACATA-CGAGACTT----CAACANTG-TGACGTC-AC-A-CCAGT------A--A--CAATCATG--A--CNGCGA-ACGNT-TCTTTTGACAGTG-AT-A-GCAAAAATTTTCTT-TACCATTAC---------CGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGCGAT-TTTT-TGAGAACGCATGG----GTA-TCGGNNC--TT-ATAGGTTTGAGCCTCGAAAGGGCCGAGGGA-ACTGCGAGTAGAAA-GCGATAATCCGGCCTTACAACCCAACGTCCCCAGAT-CG-TAATGTCAGTCGCA---GAAAGGGCGGGGA-----AATATCNTGGTTTG----TTTC--C--AAAGA-CGTAAA-CGCTTTA--CGTC-------T----TTTTC--CCCTTCTAAATTGACTACACGCG-TGTA-TATA-CACAA--TTTG-CTTGT-T-ATTACTAATAAATCACAAGTAGACGTAGGTCTATA-CCCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTATTGA-A--C-T----NTTTTTTTCCATT-TG----------TGTTGAAC-T-AAA-TTATT-TCATGT-AT--G-C---AT-GCT-TCAATG--TA-CATTCGTC------GC--TTAAAGAAAATACCAAT-TCACATGGAACTTTAGAGAATCAGAAGTGTCATTT-TAGAAAGAGAAAG-TAC-AAA-GTAGAA---NTGTGACAGTGTTTAATATTTTCCTGCAA-ATCGT-TTGAGCAAA-TNANTCTAAAATT
gi|1 : GGGTCCCGGCACTTTTTACCAATACTGACAGTTC-AT---GAAGCTTTT----TTTGATTAAGTCT--T--ATAAC-TTCACACGCATCAAAT-AAAA-AACT-AAAT--AA----A--TAGGTGTTTGATGGCTAATA------TAC-GCTACTTTTCTGAAA----AAATA-AATTTGTATTTTGAATATAAA--C-TCGATTTATTCTTAAAAAACATACCTTACAA-CTATGTACTTTACGTACCACGAGAACATAGCCGGAAACGT----ATGC-G-AG-GTTT-ATATCCTATG-CGAGGATTAGGACA--AGCGATGACGTCTAC-A-CCAGT------AT-A--CAATCATGCAA--CAGCGA-ACGATCTCTATTGACAGTG-AT-G-GCAATAATTTTCTT-TACCATTAC---------CGATCGCTGAGAAGAGAAA-TTACAACATGAAAAGCGATGTTTT-TGTGAACGCATAG----GTA-TCGGGCCAATTAATAGGTTTGAGCCTCGAAAAGGCCGAGGGACATTACGAGTAAAAA-GCGATAATCCGGCCTTACAACCCGACGTCCACAGATGCGTTAATGTCCGTCACA---GAAAGGTTGGGGAAT---AATATCGTGG-TTG----TTTC--CAAAAAGA-CGTAAC-TGCTTTAATCTTCTAAACTTT----TTTTCTTCCTTTCTAAATTGTCTACACGCG-TGCAGTATATCACAATCTTTGCCTTGTAT-ATTACTAATAAATCACAAGTAGACGTAGGTCTA----CCCCCCCCCCCCTCTCCTTGT-GTTGT---TTTTA-TGACA--C-TCAAAATTTTTTTCCATT-TG----------TGTTGAACTT-AAATTTATTCTCATGT-ATTGG-C---ATCGCT-TCAATG--TACCATTCGTC------GCCATTAAAGAAAATCCCAAT-TCACATGGAGCTTTAGAGAATCAGAAGTGTCATTTGTAGAAAGATAAAG-TAC-AAATGTAAAAGACTTGTGACAGTG-TTAATATTTTCCTGCAATATCGTCTTCAGCAAATTTAATCTAAAATT
gi|10 : cAGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGAG-CG-CACTGTCAGTCGTA---GAGAGCACAGGG------AATATCTTGATTT-----TTTT--C--ATAGA-CGTAAA-CGCTTTA--CATC-------TGGGGTTT-------TTCTAATTTGACTTTACACA-TGGA-TATA-C-TTT--TTTG-CTTCT-T-ATTGCGAATAAGTCACAAGT
gi|11 : TTTTCT-AAA----ACAT--GATTTGTATTAGGAATAT-CAT-C-TTGACATATTCTTCTAAAACATACCT-ATAA-TTTCATATTTTAGG--------GAA-ATAGATA--AATGT----ATAC-GCAA-TTTT-ATCTCACAAC-CGAGACTT----GAA-----------------------T------A--A--CATTCATA--A--CTGTGC-ACCTT-TCTTTTTACGCTA-AT-A-GAAAA
gi|12 : tttCGGCACTTTTTAACAATACATACATTTC-AT---GAAGCTTTT----T--GAGTAAGTCT--A--ATAGA-TTTACACAAATCGTAT-AAAA--ACT-AAAT--CA----A--CAGGCGTTAGTTAGCTAATA------TAC-GCTACT
gi|13 : gctgGGTCCCAGGACTTTTAACCAATATTGATAGTTC-AT---GAAGCTTTT----TTAAAGTAAATCG--A--ATAAT-TTTAAACGCATCCTAT-AAAA-AACG-AAAT--AG----A--TAGGTATTAAAT
gi|14 : TCTGAAGTGTCATTT-TAGAAAGAGAAAG---------ATAGAA---ATGTGATAGTATTTAATATATTCCTGCAA-ATTGT-TTGAGTAAA-
gi|16 : gagaagttaactgacaacttaatTTAC---------C-ATTACTGAG-AGAGA-----------------GCTAT-TTTT--GAAAACACATGG----GTA-TCATAAC--TT-ATAGATTTGAGCCTCGAA
gi|2 : tctGGTCGCGGCACTTTTTACCAATACTGACAGTTCCAT---GAAGCTTTT----TTTGATTAAGTCTTTA--TTAAC-TTCTCA-GCAGCAAAT-AAAA-AACTCAAAT--AA----AAATAGGTTCT-GATG-CAAATA-------GC-G-TACTTTTCTGAAA----AAATTAAAGTTGTATTATGAATAT-AAAAC-TCGATTTATGCTTTTAAAACATACCTTACAAACTATGTACTTTACGC-------AAA-ATAGCCG--AACGT----ATGCTG-AG-AGTT-ATATC---TAGCGAGACTT----CAGCA--G-TGACGTC-AC-A-CCAGA------ATTA--CAATCATG--A--CAGCGACACGAT-TCTTTTGACAGTGTATCG-GCACAAAATTTCTT-TATC--TAC----------GATCGCTGAG-ACAGAAAGTTACA--ATG-GAAG--AT-TTTTGTGA---CGCATAG----TTAATCGGCCT--TA-ATAGGTTTGAGCCTCGAAAGG-CCGAGGGA-AATACGAGTAAAAAAGCGATA--CCGGCCT-ACAACTCA-CGTCCACAGATGCG-TAATGTCAGTCACATC-AAAATGGGGGGGGCAAT-AATAGCTTGGTTTGAGATTTTC--C--AAAGAACGTAAAACGCTTTA--CATCCTTCTT-T----TTTTT--CCCTTCTAAA-TGATCACACGCGATGTA-TATA-CACAA--TTTG--TTGT-TCATTACTAATAAATCACATGTAGACGTAGGTCTATACCCCCCCCCCCCCCTCTCCTTGTCGTTGTTCATTTTATTGA-A--C-T----CAATTTTTCCA-C-TG----------TGTT-AACGT-AAT-TTATT-TCATGTAAT--G-C---A--GCT-TCAATGAATA-CATTCGTC------GC--T--AAAAAACTACCAAT-TCA
gi|3 : ggcGGGTCCCGGCACGTTTTACCAATGCTAACGGTTC-ATTTTAAAGCTTTTACAAGTTGAGTAAGTCT--A--ATAAC-TTCACACGCATCGTATAAAAA-AACT-AAAT--AA----A--TAGGTGTTAGATGGCGCATA------TACAGTTAC-----------------T--AAATTGTCCTGTGAATATAAA--C-TCGATTGGTTCTTCTAAAACGTACCTTATAA-CTTTCTATTTTTTT--------GGA-ATAACCG--AATGTTCACATCC-G-AG-ATT---------------AGATTT----CATCAATG-GGACGTC-ACAA-CCAGTGCAAAAA--A--CAATCATG--AGTGAGCGA-ACGAT-TCTTTTGACAGTG-GT-A-GCAAAAATTCTAAA-TGCCATTAC---------CGATTACT
gi|3 : TGAGTCTCGAAAGG-CCGTGGGA-ACGGTGAGTA-AAA-GCGATAATC-GTTCCTACAGTCCAACGTCTCCAGAT-CG-TAATGTCAGTCGCAGAGGAGGGGGTGGGGATTGGGGGTATCATAATATA----TATC--G--CCAGA-C-----------TA--TGTT-------T----TATTC--TACT------TTGACTACACGCG-TG-----TA-CACAA--ATAT-CTTGT-T-ATTACGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagtctcgaaaggccgtgggaacggtgagtaaaagcgataatcgttcctacagtccaacgtctccagatcgtaatgtcagtcgcagaggagggggtggggattgggggtatcataatatatatcgccagactatgttttattctactttgactacacgcgtgtacacaaatatcttgttattacgaa
gi|4 : gggtcccggcacgttttaccaatgctaacggttcattttaaagcttttacaagttgagtaagtctaataacttcacacgcatcgtataaaaaaactaaataaataggtgttagatggcgcatatacagttactaaattgtcctgtgaatataaactcgattggttcttctaaaacgtaccttataactttctatttttttggaataaccgaatgttcacatccgagattagatttcatcaatgggacgtcacaaccagtgcaaaaaacaatcatgagtgagcgaacgattcttttgacagtggtagcaaaaattctaaatgccattaccgattactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCCTGGTACTTTTTACCAATATTGACAGTCC-AT---GAAGTTTTT----CCTAAGTAAGTCA--ATTATACCATTTA-ACGCATTGTAT-AAAAAAACT-AAAT--CA----A--TAGGTATTCAATGGCTAATA------TCC-ACTACTTCTCTGATA----AAAT--AATTTGTTTTGT-AATAT-AA--CATTGATTTACTTCTCTAAAAAGTACCTGATGA-TTTTACAATTTACG--------GAA-ATAGCTG--AACGT----ATGC-G-A--GTTT-ATCTCACATA-CGAAACTT----CTACATTG-TTACTTC-AT-A-CCAAT------A--A--CAATCATG--A--CTGCGG-ACGTT-TCTCTCGACAGTG-AT-A-GCAAACA--TTCTT-AACCATTACTAGTCCCCACGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGTGA--TTTT-TGAGAATGTGTGG----GTG-TCGGGGT--TT-ATAGGTTTGGACCTC-AAAAGACAGAGGGA-ACTGCGA
gi|5 : ATTGTTAATA------TTC-GCTACATTTCTAAGA----AAAA--AATATATCTTAAAAATAT-AA---------------------------CCT--CG--CTTTATATTTTACA--------CAA-ATAGCCG--AACTT----ATAC-G-GGAGTTT-ATCTCACATA-CGAGGCTT----CAACAATG-TGACATC-AC-A-CCAAG------A--A--CAATCGTG--A--CTACAG-ATATT-TCTTTTGTCACTG-AA-AGGC---AATTTTCTT-TACAACTAC---------CGATTACTGAG-AGAGGAAGAGATA--ATC-AAAGCG-C-TTTT-TGAGAATGTATGG----GCA-TCAGGCA--GT-ATAAGTTTGAAACTCGGAGGGG-CGAAAGA-ACTGCGAGTAGAAA--TGATAAT-TGG-CTTAGAACTGAACGTCCCCAGaaag
gi|6 : TTACAACCCAACGTCAACAGAT-CG-TAATGTCAGTTATA---GAAAGG-TGGGGAG----AATATCATGGTTTG----TTTTTTC--AAAGA-CGTAAA-TGCATTA--CATA-------T----TTC-C--CCCTTCTAAATTGACTACATGCG-TGTA-TATA-CATAA--TGTG-CTTGT-T-ATTACTAATAAACCACAATTAGACATAGGTCTATA--------CCCCCCTCACCTTGT-GTTGC---TTTTATTGA-AATCAT----TTTTTTTTCCATTGTGTAGTTGTTTTTGTTAAAC-TAAAA-TTA-T-TCATGT-AT--GAC---AT-GTT-TCAATG--TA-CATTTGTCACATAAAC--TTAAAAAAAATAACAA--TCACATGAAAGTTTAGAGAA
gi|7 : AA-AACT-AAATCTAACGTTA--CAGTTAT-AGATGGCGAATACATGTATAA-GCTACTTTTATAAAACCAAAAAT--AATTTGTTTTAGGAATAT-----------------------AAAC------T-CGA-TTTTTTATTTAACG--------GAA-ATAGCCG--AACGT----ATGC-G-AGAGATT-ATCTCACATG-CGAGCCTT----CAACAGTG-TGACATC-AT-A-CCCGT------A--ATACAATCATG--A--CTGCGA-CTGAT-TCATTTGA-AGTG-AT-A-GTAAAAATTCTTTTATACCATTAC---------CGATTACTGAG-AGAGAAAGTGATA--ATG-AAAGCGA--TTTT-TGTGAACGCATAATTATGTA-TCGGGCC--TT-A
gi|8 : aataggAA-ATACCCG--AGTGT----ATGC-G-AT-ATTTTATCTCACATA-CGATACTT----AAACATAG-TGACGTC-AA-ATTCAGA------AC-A--CAATCATG--A--CCGTAA-GCAAT-TCGTATGACAGTG-AT-A-ACAGACGTT---TT-TATCATATC---------CAATTACTGA
gi|8 : GAACTTATGG----GGA-TCAGGGC--TG-ATAGG--------------------AGGGA-ACTG--AATAGAA--GTAATAATC-GGCCT-ACAACCCAATGTTCCCAGAC-AG-TGATAACAGacttatggggatcagggctgataggagggaactgaatagaagtaataatcggcctacaacccaatgttcccagacagtgataacagac
gi|9 : aaatacccgagtgtatgcgatattttatctcacatacgatacttaaacatagtgacgtcaaattcagaacacaatcatgaccgtaagcaattcgtatgacagtgataacagacgtttttatcatatccaattact-CCCCCCCCCCCTCCCCATTTGT-GTTGT---TTTTA-AGA-A------------------------------------ATTGAAT-T--------TT-TCA--T-AT--G-CGAAAT-GCTATC-ATG--TA-CATTTGTT------AC--TTGAAGAAAAGACCTATCTCAC----AACT--------TCAGAAGTGTCAATT-TATAAAGAGAAAGTTACAAAA-GTAGAA---CTGTGACAGGGTTTAATATTGTCCTGCAA-ATTGT-TTGAGCAAA-TGATTCTAAAATTac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CTTTTAGCAGCCTTATAAAATGACCACTTGTGAGATACTAGCTTTTAAAATGAAACACTTTGTGAAGTACTAAT
Unaligned ( gi|17 ): TTTAGCAAGTTTTTAAAATGATCACTTGTGAGATACTAA