lowQualScore : 1 1 11111111 111111 111 1111111 1 1 33333 222 1111 1 111 222222 1 11 1111 11 11 111111 11
lowQualScore : 2 22 2 3 22 2 2 2 9 5 2 2 888 3 3 7 4 4 4 88888888 222222 888 1 1111111 5 5 5 9 6 2 8 7 0 7 99999 555 4444 55 0 3 444 0 333333 8888 6 8 44 3 4444 77 5 22 5 44 666666 0 88
lowQualScore : . .. . . .. . . . . . . . ... . . . . . . ........ ...... ... . ....... . . . . . . . . . . ..... ... .... .. . . ... . ...... .... . . .. . .... .. . .. . .. ...... . ..
lowQualScore : 1 99 1 1 66 5 5 5 4 7 9 9 555 1 6 3 0 4 4 11111111 888888 000 5 5555555 0 0 3 2 7 7 0 0 0 0 00000 555 0000 88 0 2 222 8 000000 2222 0 0 00 2 2222 99 7 00 7 99 444444 1 00
consensus : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GA-GAAGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA-C------AGTA------TATACATATGT-ACAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTT----NAAAAATTTACTT--AATTTTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTATTTAT-TAC-ATTTGGTG----ATGACC--TTT-T-TTTCCA-CCTN-ATA------CATTGATTC-CTAATCATAT
Reference ( gi|2 ) : TACTTTA-TTCTC--TTT-ACCAATAGTACAAA-G-GTATT-GA-GTAGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA-C------AATA------TATACATATGT-GCAAA--C----TG-AAGCAATA-CTATATACAAAGTCATAATGGAGAG-GTTAG-AGTTTGAT-GAATAACTTT----AAAAAATGTACTT--AATTTTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAT-ATTTGGTG----ATGACC--TTT-T-CTTCCA-CCTA-ATA------CATTGATTA-CTAATCATAT
gi|5 : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GA-GAAGA-TATAC-A-CAA---G-TATTCATACAAATA-T------------------TAA-T------AGTA------TATACATATGT-ACAGA--C----TG-AAGCAATA-CTATATACAAAGTCATAATATAGGG-GATAG-AGCTTGAT-GAATGACTTT----TAAAAATTTACTT--AATTTTCTTAAAT-TG---A--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAG-TAC-ATT
gi|3 : caatTACTTTA-TTCTC--TTT-ACCAATTGTACAAAAG-GTGT--GA-GAAGA-TGTA--A-CAA---A-TAT-CATATGAACA-T-ACAATATG-ATG-AA-TTAA--------AA-------------GTATGT-ACAAA--C----TG-AAGCAAT--CTATACACAAAGTCATTATGAAGGG-GAAAG-AGTTTGAT-GAATAACTTT----TAAAAATA-AATT--A--TTTC-TGAATATGACAA--TATTATCAGAATTAAAA------ATAGATTAG-TTATTTAT-TAC-ATTTGGTGCATAATGACC--TTTGT-TCTGCA-TCT--ATA------CATTG-TTT-CTAATCATAT
gi|7 : gatTATCTTA-TTCTC--TTT-AC-AATAGTACAAA-G-GTATT-GA-GAAGA---------------------CATACAAATA-T-ACAATATG-ATA-AA-TTAA-C------AATA------TATACATATG--ACAAA--C----TGCAAGCAATA-CTATATACAAAGTCATAATGGAGGG-GACAG-AG
gi|6 : aatTACTTTA-TTCTC--TTT-ACCAATTGT-CAAA-A-GTGTT-GA-GAAGA-TATAC-A-CAA---G-T-TTCATACAAA-A-T-ACAACATG-ATA-AA-TTGA-T------AGTA------TATACATATA---CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATCATGTAG-G-GTT
gi|9 : aatTACTTTA-TTCTC--TTTTACCAATTGTACAAA-G-GTATT-GA-G-A--------------------ATTTGTACAAATA-T-ACAATATG-ATA-AA-TGAA-C------AGTA------TATACATATGT-ACAGA--C----TG-AAGCAATA-CTATATACAAAGTCATTATGGAG
gi|4 : atTACTTTA-TTCTC--TTT-AGCAATTGTA
gi|16 : aaTACTTTA-TTCTC--TTT-ACCAATAGTACAAA-G-GTATT-GA-G-AGA-TATACAA-CAA---GATATTattgataaaattaacagtacatgtatatagatatgtacagatagattgaagcaatactatatacaaagtcataatggaggggatagagttgatgaatactttaaaaaaaattactctaaattttctaaaattgacaattatcgaataaaaaaaaaatatttttaactattatatacgatttgtgatgacttttttccagtccatatacatgatcctatatatgaagt
gi|17 : aatTACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GA-GAAGA-TATAC-A-CA
gi|13 : aatTACTTT--TTCTTCATTT-AACCATTGTACAAA-GTGTATT-GA-GAAGAATATAC-A-GAAA--G-TATTCATAC-AATA-T-ACAATATG-At
gi|18 : tTACTTTA-TTCTC--TCT-ACCAATTTTA-----G-GTATT-GA-GAAAA-TATAC-A-CAA---G-TATTCA
gi|23 : TACTTTA-TTCAC--TTT-ACCAATAGTACAAA-G-GTATT-GA-G
gi|8 : caatTACTTTA-TTCTA--TTT-AC---------AAA-G-GTATT-GA-GAAGA-TATAC-A-CAA---G-TATTCATACAAATG-TGATCATATACATGTAC-TTAA-TTTTTTAAAAA------CATAAGTATG------G--T----TA-AAGTACTAGTTACATACAAA
gi|25 : tTACTTTA-TTCTC--TTT-ACCAATAGTACAtctat
gi|15 : aatTACTTTA-TTCCC--TTT-ACCAAT--T--------GTATT----------TATAC-A-CAA---G-TACTTATACAAATggtg
gi|26 : aaatagcaatTACTTTA-TTCTC--TTC-ACCAATGGTACAAtgtc
gi|14 : caatACGTCA-TTC-C--TTT-ACAAAT-GTACAGA-G--TATT-GA-GAAAA-TATAT-A-CAA---G-TA-TCATCAAAATA-T-ACA
gi|22 : CTTTACTTCTC--TTT-ATCAATTGTACTAA-G-GTATT-GA-G
gi|1 : cttTTTA-TTCTC--TT--ACCAAT-GTACAA--G-TTATTTGA-GAAGACTATAC-AACAA---G-TATTCATACAAATA-TTACAATAT--ATA-AA-TCAAAC------AGTA------TATACATATGTAGCAAAAAC----TG-AAGCAATA-CTATATACAAAGCCATCTTGGAGAGTGATAGAAGTTTGATAAAATAACTTTTTTAAAAAAATTT-CTT--CATTTT-TTAAAT-TGACAATTTATTATCAGAATTAAAA------ATTGATT--A-TATTTAT-AAC-ATTTGGTG----ATGACC--TTT-T--TTCCA-CCTT-ATA------CATTGAGTACCTAATCATATaaag
gi|12 : taTTA-TTCTC--CTT-ACCAATAGTACAA----GTATT-CATACAAA-TATAT-A-CAATATG-TGTTC--ACAAATACT-GCAATAataaa
gi|24 : -T-ACAATATG-ATA-AA-TTAA-C------AATA------TATACATATGT-aacaaagtcattatgaaggggaca
gi|4 : AAT-TG-ATA-AAATTAA-C------AGTACATGTATATAGATATGT-ACAGA--TAGATTG-AAGCAATA-CTATATACAAAGTCATAATGGAGGG-GATAG-AG-TTGAT-GAAT-ACTTTAA--AAAAAAT-TACTCTAAATTTTCTAAAAT-TGACA----ATTATC-GAATAAAAAAAAAATATT--TTTAACTA-TTATATACGATTT-GTG----ATGAC----TT-T-TTTCCAGTCCATATA------CA-TGATa
gi|11 : aatactttattctctttagcaattgt--TATTATCAGAATTAAAA------ATTGATTTGACTA-ATAT-TAC-ATTTAGTG----ATGACCTTTTT-T-TTTCCA-CCCT-ATACATGTGCATTGATTC-CTAATCATATcctatatatgaagt
gi|19 : TTGGTG----ATGACC--TTT-TTCCCCCA-CCTA-ATA------TATTGATTC-CTAATCATAT
gi|20 : TG----ATGACC--TTT-T-TTTCCA-TTTT-ATA------CATTGATTC-CTAATCATATa
gi|21 : TGACC--TTT-T-CTTCCA-CCTA-ATA------CACTGATTC-CTAATCATATaaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATCATACAACAGACAATGATCGCAACCAAGAGTTGCTGAATATGTTAAGAAGTGTACCTATAAATTCCCTCA
Unaligned ( gi|27 ): TATACACAAGTACTTATACAAATTGTCAGC
Alignments
lowQualScore : 111111 22222 11 111 111111 2 1111 111111
lowQualScore : 2 22 2 4 22 2 2 2 5 2 2 777 2 3 6 3 4 4 99 111111 4 66 9999 4 4 1 5 6 3 8 3 66666 66 0 11 8 3 8 0 000 999999 3 1 3 6 6 1 2222 777 5 5 66 5 444444 0 5
lowQualScore : . .. . . .. . . . . . . ... . . . . . . .. ...... . .. .... . . . . . . . . ..... .. . .. . . . . ... ...... . . . . . . .... ... . . .. . ...... . .
lowQualScore : 0 88 0 9 77 2 2 4 0 7 7 999 9 3 7 6 0 0 55 555555 0 11 4444 4 4 0 0 7 8 0 8 00000 66 8 00 0 2 0 8 000 222222 5 0 7 7 7 0 1111 000 0 0 99 9 444444 1 0
consensus : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTT----AAAAAATTTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAC-ATTTGGTG----ATGACC--TTT-TTTTCC-A--CCTNATA------CATTGATT-CCTAATCATAT
Reference ( family-5017 ) : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTT----NAAAAATTTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTATTTAT-TAC-ATTTGGTG----ATGACC--TTT-TTTTCC-A--CCTNATA------CATTGATT-CCTAATCATAT
gi|1 : TTTA-TTCTC--TT--ACCAAT-GTACAA--G-TTATTTGAGA-AGACTATAC-AACAA---G-TATTCATACAAATA-TTACAATAT--ATA-AA-TCAAA-CAGTA------TATACATATGTAGCAAAAAC----TG-AAGCAATA-CTATATACAAAGCCATCTTGGAGAGTGATAGAAGTTTGATAAAATAACTTTTTTAAAAAAATTT-CTT--CATT-TT-TTAAAT-TGACAATTTATTATCAGAATTAAAA------ATTGATT--A-TATTTAT-AAC-ATTTGGTG----ATGACC---TT-TTTTCC-A--CCTTATA------CATTGAGTACCTAATCATAT
gi|11 : ta--TATTATCAGAATTAAAA------ATTGATTTGACTA-ATAT-TAC-ATTTAGTG----ATGACCTTTTT-TTTTCC-A--CCCTATACATGTGCATTGATT-CCTAATCATATataaa
gi|12 : TTA-TTCTC--CTT-ACCAATAGTACAA----GTATT-CATACAAA-TATAT-A-CAATATG-TGTTC--ACAAATACT-GCAATA
gi|12 : ACAAAGTCATTATGAAGGG-GACAaacaaagtcattatgaaggggaca
gi|13 : ttattctccttaccaatagtacaagtattcatacaaatatatacaatatgtgttcacaaatactgcaataaTACTTT--TTCTTCATTT-AACCATTGTACAAA-GTGTATT-GAGA-AGAATATAC-A-GAAA--G-TATTCATAC-AATA-T-ACAATATG-A
gi|14 : tACGTCA-TTC-C--TTT-ACAAAT-GTACAGA-G--TATT-GAGA-AAA-TATAT-A-CAA---G-TA-TCATCAAAATA-T-ACA
gi|15 : TACTTTA-TTCCC--TTT-ACCAATTGTA----------TT----------TATAC-A-CAA---G-TACTTATACAAAT
gi|16 : aaatagcaatTACTTTA-TTCTC--TTT-ACCAATAGTACAAA-G-GTATT-GAG--AGA-TATACAA-CAA---GATATTtgtc
gi|17 : aatTACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CA
gi|18 : aatTACTTTA-TTCTC--TCT-ACCAATTTTA-----G-GTATT-GAGA-AAA-TATAC-A-CAA---G-TATTCAt
gi|19 : TTGGTG----ATGACC--TTT-TTCCCCCA--CCTAATA------TATTGATT-CCTAATCATAT
gi|2 : TACTTTA-TTCTC--TTT-ACCAATAGTACAAA-G-GTATT-GAGT-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATGTG-CAAA--C----TG-AAGCAATA-CTATATACAAAGTCATAATGGAGAG-GTTAG-AGTTTGAT-GAATAACTTT----AAAAAATGTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAT-ATTTGGTG----ATGACC--TTT-TCTTCC-A--CCTAATA------CATTGATT-ACTAATCATATa
gi|20 : TG----ATGACC--TTT-TTTTCC-A--TTTTATA------CATTGATT-CCTAATCATAT
gi|21 : TGACC--TTT-TCTTCC-A--CCTAATA------CACTGATT-CCTAATCATATaaa
gi|22 : CTTTACTTCTC--TTT-ATCAATTGTACTAA-G-GTATT-GAGA-Aaaa
gi|23 : cttTACTTTA-TTCAC--TTT-ACCAATAGTACAAA-G-GTATT-GAGag
gi|24 : caat-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATGTA-
gi|25 : TACTTTA-TTCTC--TTT-ACCAATAGTACA
gi|26 : aatTACTTTA-TTCTC--TTC-ACCAATGGTACAAggtg
gi|3 : caatTACTTTA-TTCTC--TTT-ACCAATTGTACAAAAG-GTGT--GAGA-AGA-TGTA--A-CAA---A-TAT-CATATGAACA-T-ACAATATG-ATG-AA-TTAA--AAGTA------T--------GTA-CAAA--C----TG-AAGCAAT--CTATACACAAAGTCATTATGAAGGG-GAAAG-AGTTTGAT-GAATAACTTT----TAAAAA--TA-----AATTATTTCTGAATATGACAA--TATTATCAGAATTAAAA------ATAGATTAG-TTATTTAT-TAC-ATTTGGTGCATAATGACC--TTTGTTCTGC-A--TCT-ATA------CATTG-TT-TCTAATCATAT
gi|4 : gatTACTTTA-TTCTC--TTT-AGCAATTGTA---------ATT-GATA-AAA-T
gi|4 : aaAAT-TG-ATA-AAATTAA--CAGTACATGTATATAGATATGTA-CAGA--TAGATTG-AAGCAATA-CTATATACAAAGTCATAATGGAGGG-GATAG-AG-TTGAT-GAAT-ACTTTA---AAAAAAATTACTCTAAATT-TTCTAAAAT-TGACA----ATTATC-GAATAAAAAAAAAATATT--TTTAACTA-TTATATACGATTT-GTG----ATGAC----TT-TTTTCC-AGTCCATATA------CA-TGA-T-CCTAtaacagtacatgtatatagatatgtacagatagattgaagcaatactatatacaaagtcataatggaggggatagagttgatgaatactttaaaaaaaattactctaaattttctaaaattgacaattatcgaataaaaaaaaaatatttttaactattatatacgatttgtgatgacttttttccagtccatatacatgatcctatatatgaagt
gi|5 : aatactttattctctttagcaattgtTACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T------------------TAA--TAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATAATATAGGG-GATAG-AGCTTGAT-GAATGACTTT----TAAAAATTTACTT--AATT-TTCTTAAAT-TG---A--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAG-TAC-ATTtatatgaagt
gi|6 : caatTACTTTA-TTCTC--TTT-ACCAATTGT-CAAA-A-GTGTT-GAGA-AGA-TATAC-A-CAA---G-T-TTCATACAAA-A-T-ACAACATG-ATA-AA-TTGA--TAGTA------TATACATAT--A-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATCATGTAGGG-
gi|7 : aatTATCTTA-TTCTC--TTT-AC-AATAGTACAAA-G-GTATT-GAGA-AGA---------------------CATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATG-A-CAAA--C----TGCAAGCAATA-CTATATACAAAGTCATAATGGAGGG-GACAG-AGtt
gi|8 : aatTACTTTA-TTCT-----------ATT-TACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATG-TGATCATATACATGTAC-TTAATTTTTTA------AAAACATAAGTA-T-GG--T----TA-AAGTACTAGTTACATACAAA
gi|9 : tTACTTTA-TTCTC--TTTTACCAATTGTACAAA-G-GTATT-GAGA-A---------------------TTTGTACAAATA-T-ACAATATG-ATA-AA-TGAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATTATGGAGtctat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATCATACAACAGACAATGATCGCAACCAAGAGTTGCTGAATATGTTAAGAAGTGTACCTATAAATTCCCTCA
Unaligned ( gi|27 ): TATACACAAGTACTTATACAAATTGTCAGC
Alignments
lowQualScore : 111111 22222 11 111 111111 1 1111 111111
lowQualScore : 2 22 2 4 22 2 2 2 5 2 2 777 2 3 6 3 4 4 99 111111 4 66 9999 4 4 1 5 6 3 8 3 66666 66 0 11 8 3 8 0 000 999999 3 1 3 6 6 1 2222 777 5 5 66 5 444444 0 5
lowQualScore : . .. . . .. . . . . . . ... . . . . . . .. ...... . .. .... . . . . . . . . ..... .. . .. . . . . ... ...... . . . . . . .... ... . . .. . ...... . .
lowQualScore : 0 88 0 9 77 2 2 4 0 7 7 999 9 3 7 6 0 0 55 555555 0 11 4444 4 4 0 0 7 8 0 8 44444 66 8 00 0 2 0 8 000 222222 5 0 3 7 7 0 1111 000 0 0 99 9 444444 1 0
consensus : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTT----AAAAAATTTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAC-ATTTGGTG----ATGACC--TTT-TTTTCC-A--CCTNATA------CATTGATT-CCTAATCATAT
Reference ( family-5017 ) : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTT----AAAAAATTTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAC-ATTTGGTG----ATGACC--TTT-TTTTCC-A--CCTNATA------CATTGATT-CCTAATCATAT
gi|1 : TTTA-TTCTC--TT--ACCAAT-GTACAA--G-TTATTTGAGA-AGACTATAC-AACAA---G-TATTCATACAAATA-TTACAATAT--ATA-AA-TCAAA-CAGTA------TATACATATGTAGCAAAAAC----TG-AAGCAATA-CTATATACAAAGCCATCTTGGAGAGTGATAGAAGTTTGATAAAATAACTTTTTTAAAAAAATTT-CTT--CATT-TT-TTAAAT-TGACAATTTATTATCAGAATTAAAA------ATTGATT--A-TATTTAT-AAC-ATTTGGTG----ATGACC---TT-TTTTCC-A--CCTTATA------CATTGAGTACCTAATCATAT
gi|11 : ta--TATTATCAGAATTAAAA------ATTGATTTGACTA-ATAT-TAC-ATTTAGTG----ATGACCTTTTT-TTTTCC-A--CCCTATACATGTGCATTGATT-CCTAATCATATataaa
gi|12 : TTA-TTCTC--CTT-ACCAATAGTACAA----GTATT-CATACAAA-TATAT-A-CAATATG-TGTTC--ACAAATACT-GCAATA
gi|12 : ACAAAGTCATTATGAAGGG-GACAaacaaagtcattatgaaggggaca
gi|13 : ttattctccttaccaatagtacaagtattcatacaaatatatacaatatgtgttcacaaatactgcaataaTACTTT--TTCTTCATTT-AACCATTGTACAAA-GTGTATT-GAGA-AGAATATAC-A-GAAA--G-TATTCATAC-AATA-T-ACAATATG-A
gi|14 : tACGTCA-TTC-C--TTT-ACAAAT-GTACAGA-G--TATT-GAGA-AAA-TATAT-A-CAA---G-TA-TCATCAAAATA-T-ACA
gi|15 : TACTTTA-TTCCC--TTT-ACCAATTGTA----------TT----------TATAC-A-CAA---G-TACTTATACAAAT
gi|16 : aaatagcaatTACTTTA-TTCTC--TTT-ACCAATAGTACAAA-G-GTATT-GAG--AGA-TATACAA-CAA---GATATTtgtc
gi|17 : aatTACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CA
gi|18 : aatTACTTTA-TTCTC--TCT-ACCAATTTTA-----G-GTATT-GAGA-AAA-TATAC-A-CAA---G-TATTCAt
gi|19 : TTGGTG----ATGACC--TTT-TTCCCCCA--CCTAATA------TATTGATT-CCTAATCATAT
gi|2 : TACTTTA-TTCTC--TTT-ACCAATAGTACAAA-G-GTATT-GAGT-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATGTG-CAAA--C----TG-AAGCAATA-CTATATACAAAGTCATAATGGAGAG-GTTAG-AGTTTGAT-GAATAACTTT----AAAAAATGTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAT-ATTTGGTG----ATGACC--TTT-TCTTCC-A--CCTAATA------CATTGATT-ACTAATCATATa
gi|20 : TG----ATGACC--TTT-TTTTCC-A--TTTTATA------CATTGATT-CCTAATCATAT
gi|21 : TGACC--TTT-TCTTCC-A--CCTAATA------CACTGATT-CCTAATCATATaaa
gi|22 : CTTTACTTCTC--TTT-ATCAATTGTACTAA-G-GTATT-GAGA-Aaaa
gi|23 : cttTACTTTA-TTCAC--TTT-ACCAATAGTACAAA-G-GTATT-GAGag
gi|24 : caat-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATGTA-
gi|25 : TACTTTA-TTCTC--TTT-ACCAATAGTACA
gi|26 : aatTACTTTA-TTCTC--TTC-ACCAATGGTACAAggtg
gi|3 : caatTACTTTA-TTCTC--TTT-ACCAATTGTACAAAAG-GTGT--GAGA-AGA-TGTA--A-CAA---A-TAT-CATATGAACA-T-ACAATATG-ATG-AA-TTAA--AAGTA------T--------GTA-CAAA--C----TG-AAGCAAT--CTATACACAAAGTCATTATGAAGGG-GAAAG-AGTTTGAT-GAATAACTTT----TAAAAA--TA-----AATTATTTCTGAATATGACAA--TATTATCAGAATTAAAA------ATAGATTAG-TTATTTAT-TAC-ATTTGGTGCATAATGACC--TTTGTTCTGC-A--TCT-ATA------CATTG-TT-TCTAATCATAT
gi|4 : gatTACTTTA-TTCTC--TTT-AGCAATTGTA---------ATT-GATA-AAA-T
gi|4 : aaAAT-TG-ATA-AAATTAA--CAGTACATGTATATAGATATGTA-CAGA--TAGATTG-AAGCAATA-CTATATACAAAGTCATAATGGAGGG-GATAG-AG-TTGAT-GAAT-ACTTTA---AAAAAAATTACTCTAAATT-TTCTAAAAT-TGACA----ATTATC-GAATAAAAAAAAAATATT--TTTAACTA-TTATATACGATTT-GTG----ATGAC----TT-TTTTCC-AGTCCATATA------CA-TGA-T-CCTAtaacagtacatgtatatagatatgtacagatagattgaagcaatactatatacaaagtcataatggaggggatagagttgatgaatactttaaaaaaaattactctaaattttctaaaattgacaattatcgaataaaaaaaaaatatttttaactattatatacgatttgtgatgacttttttccagtccatatacatgatcctatatatgaagt
gi|5 : aatactttattctctttagcaattgtTACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T------------------TAA--TAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATAATATAGGG-GATAG-AGCTTGAT-GAATGACTTT----TAAAAATTTACTT--AATT-TTCTTAAAT-TG---A--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAG-TAC-ATTtatatgaagt
gi|6 : caatTACTTTA-TTCTC--TTT-ACCAATTGT-CAAA-A-GTGTT-GAGA-AGA-TATAC-A-CAA---G-T-TTCATACAAA-A-T-ACAACATG-ATA-AA-TTGA--TAGTA------TATACATAT--A-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATCATGTAGGG-
gi|7 : aatTATCTTA-TTCTC--TTT-AC-AATAGTACAAA-G-GTATT-GAGA-AGA---------------------CATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATG-A-CAAA--C----TGCAAGCAATA-CTATATACAAAGTCATAATGGAGGG-GACAG-AGtt
gi|8 : aatTACTTTA-TTCT-----------ATT-TACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATG-TGATCATATACATGTAC-TTAATTTTTTA------AAAACATAAGTA-T-GG--T----TA-AAGTACTAGTTACATACAAA
gi|9 : tTACTTTA-TTCTC--TTTTACCAATTGTACAAA-G-GTATT-GAGA-A---------------------TTTGTACAAATA-T-ACAATATG-ATA-AA-TGAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATTATGGAGtctat
blockSeqs : C CA T A AA T . C A A . TAT A C G C T A TT CATGTA . . AGAT C G T . . T . A AA TG TA A C A A AAAAAT T C T A G A CATA TTT G C GT T CATGTG .
blockSeqs : . . . T A . . . . . . A . . . . . . . . . . . . . A . . T . A A AT . . T . A . T C . . . G . T . . . A . .
blockSeqs : . . . T A . . . . . . . . . . . . . . . . . . . . T . . C . G T TT . . C . A . A T . . . G . T . . . A . .
blockSeqs : . . . A A . . . . . . . . . . . . . . . . . . . . A . . . . . T . . . C . . . T C . . . G . T . . . T . .
blockSeqs : . . . T A . . . . . . . . . . . . . . . . . . . . A . . . T C . . . . . T . . . A . .
blockSeqs : . . . T A . . . . . . . . . . . . . . . . . . . . C . . T . . . T . .
blockSeqs : . . . A A . . . . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . T A . . . . . . . . . . . . . . . . . . . . T
blockSeqs : . . . A A . . . . . . . . . . . . . . . .
blockSeqs : . . . A A . . . . . . . . . . .
blockSeqs : . . . G A . . . . . . . . . .
blockSeqs : . . . T A . . . . . . . .
blockSeqs : . . . T A . . . . . . . .
blockSeqs : . . . T . . . . . . .
blockSeqs : . . . T . . . . .
blockSeqs : . . . A . . . .
blockSeqs : . . . T . . .
blockSeqs : . . . T
blockSeqs : . . . .
blockSeqCons : A* ** ** T**** A** T**
originalCons : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTT----AAAAAATTTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAC-ATTTGGTG----ATGACC--TTT-TTTTCC-A--CCTNATA------CATTGATT-CCTAATCATAT
finalCons : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTTT----AAAAATTTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAC-ATTTGGTG----ATGACCT--TT-TTTTCC-A--CCTNATA------CATTGATT-CCTAATCATAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATCATACAACAGACAATGATCGCAACCAAGAGTTGCTGAATATGTTAAGAAGTGTACCTATAAATTCCCTCA
Unaligned ( gi|27 ): TATACACAAGTACTTATACAAATTGTCAGC
Alignments
lowQualScore : 111111 222222 11 111 111111 1 1111 111111
lowQualScore : 2 22 2 4 22 2 2 2 5 2 2 777 2 3 6 3 4 4 99 111111 4 66 9999 4 4 1 5 6 3 8 3 666666 66 0 11 8 3 8 0 000 999999 3 1 3 6 6 1 2222 777 5 5 66 5 444444 0 5
lowQualScore : . .. . . .. . . . . . . ... . . . . . . .. ...... . .. .... . . . . . . . . ...... .. . .. . . . . ... ...... . . . . . . .... ... . . .. . ...... . .
lowQualScore : 0 88 0 9 77 2 2 4 0 7 7 999 9 3 7 6 0 0 55 555555 0 11 4444 4 4 0 0 7 8 0 8 444444 66 8 00 0 2 0 8 000 222222 5 0 3 7 7 0 1111 000 0 0 99 9 444444 1 0
consensus : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTT-T----AAAAATTTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAC-ATTTGGTG----ATGACC--TTT-TTTTCC-A--CCTNATA------CATTGATT-CCTAATCATAT
Reference ( family-5017 ) : TACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATNATGGAGGG-GATAG-AGTTTGAT-GAATAACTTT-T----AAAAATTTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAC-ATTTGGTG----ATGACC--TTT-TTTTCC-A--CCTNATA------CATTGATT-CCTAATCATAT
gi|1 : TTTA-TTCTC--TT--ACCAAT-GTACAA--G-TTATTTGAGA-AGACTATAC-AACAA---G-TATTCATACAAATA-TTACAATAT--ATA-AA-TCAAA-CAGTA------TATACATATGTAGCAAAAAC----TG-AAGCAATA-CTATATACAAAGCCATCTTGGAGAGTGATAGAAGTTTGATAAAATAACTTT-TTTAAAAAAATTT-CTT--CATT-TT-TTAAAT-TGACAATTTATTATCAGAATTAAAA------ATTGATT--A-TATTTAT-AAC-ATTTGGTG----ATGACC---TT-TTTTCC-A--CCTTATA------CATTGAGTACCTAATCATAT
gi|11 : ta--TATTATCAGAATTAAAA------ATTGATTTGACTA-ATAT-TAC-ATTTAGTG----ATGACCTTTTT-TTTTCC-A--CCCTATACATGTGCATTGATT-CCTAATCATATataaa
gi|12 : TTA-TTCTC--CTT-ACCAATAGTACAA----GTATT-CATACAAA-TATAT-A-CAATATG-TGTTC--ACAAATACT-GCAATA
gi|12 : ACAAAGTCATTATGAAGGG-GACAaacaaagtcattatgaaggggaca
gi|13 : ttattctccttaccaatagtacaagtattcatacaaatatatacaatatgtgttcacaaatactgcaataaTACTTT--TTCTTCATTT-AACCATTGTACAAA-GTGTATT-GAGA-AGAATATAC-A-GAAA--G-TATTCATAC-AATA-T-ACAATATG-A
gi|14 : tACGTCA-TTC-C--TTT-ACAAAT-GTACAGA-G--TATT-GAGA-AAA-TATAT-A-CAA---G-TA-TCATCAAAATA-T-ACA
gi|15 : TACTTTA-TTCCC--TTT-ACCAATTGTA----------TT----------TATAC-A-CAA---G-TACTTATACAAAT
gi|16 : aaatagcaatTACTTTA-TTCTC--TTT-ACCAATAGTACAAA-G-GTATT-GAG--AGA-TATACAA-CAA---GATATTtgtc
gi|17 : aatTACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CA
gi|18 : aatTACTTTA-TTCTC--TCT-ACCAATTTTA-----G-GTATT-GAGA-AAA-TATAC-A-CAA---G-TATTCAt
gi|19 : TTGGTG----ATGACC--TTT-TTCCCCCA--CCTAATA------TATTGATT-CCTAATCATAT
gi|2 : TACTTTA-TTCTC--TTT-ACCAATAGTACAAA-G-GTATT-GAGT-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATGTG-CAAA--C----TG-AAGCAATA-CTATATACAAAGTCATAATGGAGAG-GTTAG-AGTTTGAT-GAATAACTTT-A----AAAAATGTACTT--AATT-TTCTTAAAT-TGACAA--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAT-TAT-ATTTGGTG----ATGACC--TTT-TCTTCC-A--CCTAATA------CATTGATT-ACTAATCATATa
gi|20 : TG----ATGACC--TTT-TTTTCC-A--TTTTATA------CATTGATT-CCTAATCATAT
gi|21 : TGACC--TTT-TCTTCC-A--CCTAATA------CACTGATT-CCTAATCATATaaa
gi|22 : CTTTACTTCTC--TTT-ATCAATTGTACTAA-G-GTATT-GAGA-Aaaa
gi|23 : cttTACTTTA-TTCAC--TTT-ACCAATAGTACAAA-G-GTATT-GAGag
gi|24 : caat-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATGTA-
gi|25 : TACTTTA-TTCTC--TTT-ACCAATAGTACA
gi|26 : aatTACTTTA-TTCTC--TTC-ACCAATGGTACAAggtg
gi|3 : caatTACTTTA-TTCTC--TTT-ACCAATTGTACAAAAG-GTGT--GAGA-AGA-TGTA--A-CAA---A-TAT-CATATGAACA-T-ACAATATG-ATG-AA-TTAA--AAGTA------T--------GTA-CAAA--C----TG-AAGCAAT--CTATACACAAAGTCATTATGAAGGG-GAAAG-AGTTTGAT-GAATAACTTT-T----AAAAA--TA-----AATTATTTCTGAATATGACAA--TATTATCAGAATTAAAA------ATAGATTAG-TTATTTAT-TAC-ATTTGGTGCATAATGACC--TTTGTTCTGC-A--TCT-ATA------CATTG-TT-TCTAATCATAT
gi|4 : gatTACTTTA-TTCTC--TTT-AGCAATTGTA---------ATT-GATA-AAA-T
gi|4 : aaAAT-TG-ATA-AAATTAA--CAGTACATGTATATAGATATGTA-CAGA--TAGATTG-AAGCAATA-CTATATACAAAGTCATAATGGAGGG-GATAG-AG-TTGAT-GAAT-ACTTTAA----AAAAAATTACTCTAAATT-TTCTAAAAT-TGACA----ATTATC-GAATAAAAAAAAAATATT--TTTAACTA-TTATATACGATTT-GTG----ATGAC----TT-TTTTCC-AGTCCATATA------CA-TGA-T-CCTAtaacagtacatgtatatagatatgtacagatagattgaagcaatactatatacaaagtcataatggaggggatagagttgatgaatactttaaaaaaaattactctaaattttctaaaattgacaattatcgaataaaaaaaaaatatttttaactattatatacgatttgtgatgacttttttccagtccatatacatgatcctatatatgaagt
gi|5 : aatactttattctctttagcaattgtTACTTTA-TTCTC--TTT-ACCAATTGTACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATA-T------------------TAA--TAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATAATATAGGG-GATAG-AGCTTGAT-GAATGACTTT-T----AAAAATTTACTT--AATT-TTCTTAAAT-TG---A--TATTATCAGAATTAAAA------ATTGATTTGACTA-TTAG-TAC-ATTtatatgaagt
gi|6 : caatTACTTTA-TTCTC--TTT-ACCAATTGT-CAAA-A-GTGTT-GAGA-AGA-TATAC-A-CAA---G-T-TTCATACAAA-A-T-ACAACATG-ATA-AA-TTGA--TAGTA------TATACATAT--A-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATCATGTAGGG-
gi|7 : aatTATCTTA-TTCTC--TTT-AC-AATAGTACAAA-G-GTATT-GAGA-AGA---------------------CATACAAATA-T-ACAATATG-ATA-AA-TTAA--CAATA------TATACATATG-A-CAAA--C----TGCAAGCAATA-CTATATACAAAGTCATAATGGAGGG-GACAG-AGtt
gi|8 : aatTACTTTA-TTCT-----------ATT-TACAAA-G-GTATT-GAGA-AGA-TATAC-A-CAA---G-TATTCATACAAATG-TGATCATATACATGTAC-TTAATTTTTTA------AAAACATAAGTA-T-GG--T----TA-AAGTACTAGTTACATACAAA
gi|9 : tTACTTTA-TTCTC--TTTTACCAATTGTACAAA-G-GTATT-GAGA-A---------------------TTTGTACAAATA-T-ACAATATG-ATA-AA-TGAA--CAGTA------TATACATATGTA-CAGA--C----TG-AAGCAATA-CTATATACAAAGTCATTATGGAGtctat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATCATACAACAGACAATGATCGCAACCAAGAGTTGCTGAATATGTTAAGAAGTGTACCTATAAATTCCCTCA
Unaligned ( gi|27 ): TATACACAAGTACTTATACAAATTGTCAGC