lowQualScore : 11 11 55555555555555555555555555555555 22222222222222222222 11
lowQualScore : 8 3 3 2 55 2 2 33 444 2 2 2 2 2 2 11 2 77777 2 2 22222222222222222222222222222222 2 2 555555 00000000000000000000 33 555 11 6 3
lowQualScore : . . . . .. . . .. ... . . . . . . .. . ..... . . ................................ . . ...... .................... .. ... .. . .
lowQualScore : 8 1 1 5 44 4 4 22 111 4 4 2 2 4 4 99 5 77777 5 4 44444444444444444444444444444444 5 5 555555 99999999999999999999 77 444 55 2 1
consensus : AGACAAAA-T-GCA-GGA-AACATGTGTTGA-A-AA--CTT---C-A-GGA-TTT-CAT-TATCT-AT-TG-CTGTAC-TAATCT-CAAAAAN--------A-AAA--NT--T----N--AAG-AAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGCA--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
Reference ( gi|4 ) : AGACAAAA-T-GCA-GGT-AACATGTGTTGA-A-AA--CTT---C-A-GAA-TTT-CAT-TATCC-AT-TG-CTGTAC-TAATCT-CAAAAAA--------A-AAA--AT--T----G--AAA-AAATA-T-ATAC--T--CTAA----CT---ATG------ATTTTGCA--TTTTTTG---TA--TACAT-TTTCATTGAAAAAAA
gi|1 : AGACAAAAAT-GCACGGTTAACATGTGTTGA-A-AA--CTT---C-A-GTA-TTTTCAT-TACCC-AT-TAACT-TAC-TAATCTGCAAAATATTTTTTTTA-GA-------C----C--AAA-AAGTA-T-ATAC--TGCCTAA----CT---ATG------ATTTTGCA--TTTTTT----TATTTACAT-TTTCATTGAAAAA
gi|7 : aaAGAAAAAA-T-GTA-GAA-AACAT-T-TTGA-A-AA--CCT---C-A-GGA-TTT-CAT-TATAT-TT-TG-CTGTAC-TAATCT-AAAAATA--------A-ATA--AT--TC---T--AGG-AAATA-T-ATAC--T--CTAA----CT---ATC------TTTTTACA--TTTTcccaaatttattcatcat
gi|14 : aAGA-AAAT-T-GCG-GGT-AACATGT-TTGACA-AA--CTTACCC-AAGAA-TTT-CGTCTATCCTATCTG-TT-TAC-TAATCT-AAAAAAA--------AAAAA--AT--TCCA-G--TAA-ATATA-A-ATAC--catgggggaaaaacat
gi|22 : atttaaACATAA-T-GCT-GGA-AACATGTGTTGA-A-AA--CTT---C-A-GGA-TT
gi|3 : tcaaagaAAAA-TTGCA-GGA-AACATGTGTTGA-A-AA--CTT---T-A-CGA-TTT-CAT-T-----AT-TG-CTGTTC-TAATCT-C--AAAA--------C-AAA--AT--TC---T--AAG-AAATA-T-ATAC--T--CTAA----AT---ACGTTTTTTTTTTTGCA--TTTTTTG---AA--TATAT-TTTCATTGAAGAAA
gi|16 : aaAAAA-G-GAA-GGA-AACGTGTATTTA-A-AA--CTT---C-A-GAA-TTT-CAT-TATCT-AT-TG-ATGTAC-TAATCT-CAAAAAA--------T-AAT--TT--C----A--AAG-AATTA-T-ATAcccaaattct
gi|11 : aaaaaaaAAAA-T-TCA-AAG-AA-ATGTGTTGA-ATAA--TTT---C---GAA-TTT-CAT-TATC---------------TAAT-T-CAACAAT--------A-ATT--TT--T----C--AGG-AAATA-T-TTAC--T--TTAA----CT---ATG------ATTTTGCA--ATTCTGGGGATA--TATAT-TT
gi|18 : aAAAA-T-ACA-GGA-AACATATGATGA-A-AA--CTA---C-A-GGA-TTG-CAT-TATCA-AT-TA--------TAATCT-AAAA
gi|10 : caaaataaaaaAA-T-GCA-GGA-AACATGTGTTGA-A-AA--CTT---C-A-GGA-TTT-TAT-TATCT-AT-TG-CTGAAC-CAATCT-CAAAAAT--------A-CAT--TT--TC---T--AAG-ACATT-T-TTAC--T--CTAA----CT---ATG------GTTTTTTAAGTTTTTT
gi|19 : gaaatAA-G-GCG-GGA-AACATGTATTGA-A-AA--CTT---C-A-GGATTTT-CAT-TATCT-AT-------TAC-TACTCT-CAAAttt
gi|12 : aaaaagg-T-GCA-GGC-AAAATGTGTTGA-A-AA--CTT---C-A-GAA-TTT-CAT-TATCT-AT-TG-CTGCAC-TAATCT-CAA---------------------------------------A-T-ATAC-------------------TG------CTTTTGCA--CTTTTTG---TA--CAT-T-TTTCATTTAAAAAGAc
gi|8 : -T-GCA-GGA-AACATGCATTGA-A-AA--CTC---C-A-GGA-TTT-CAT-TATCT-AT-TG-TTAACC-TAATCT-CAAAAAC--------A-GAA--TTTCT----G---AG-AAATA-T-ATA----------------------------GTTTTGCA--ATTTTTA---AAATTATAT-TTTCATTGAAAAAAAaacacaca
gi|6 : g-T-GCA-GGA-AACATGCATTGA-A-AAAACTC---CGA-GGA-TTT-CAT-TATCT-AT-TG-TTAAACCTAATCT-CAAAAAA--------C-AGA--AT--TTCCTG--AGA-AA----T-ATAC--T-----------------A------GTTTTGCA--ATTTTTA---AAA-TATAA-TTTCATTGAAAAAAAacc
gi|2 : CA-GAA-AACATGTGTTGA-A-AA--CTT---C-A-GGA-TTT-CAT-TATCT-AT-TG-TTGTAC-TAATCT-GAGAAAT--------A-AAA--TT--TC---T--AAG-AAATA-T-TTAC--T--TTAA----CT---ATG------TTTTCGCT--TATTTGG---TA--TATAT-TTTCATTGGAGAAAAac
gi|5 : aaaaaaacatCA-GGA-CACATGCGTTGC-A-AA--ATT---C-A-GGA-TTT-CAT-TATC------G-GTGTAC-TAAT-T-CAAAAAT--------A-AAA--TT--T----CT-AAG-AAACA-T-ATAC--T--CTAT----CT---ATG------CTTTTGTA--TTTTTTC---TC--T-CTT-TTTAAAAGAAAAAaaaaaaccaaattctt
gi|21 : A-GGA-AACATGTGTTGA-A-AA--CTT---C-A-GGA-TTC-CAG-TAtattttcattg
gi|9 : ATGTGTTGA-A-AA--TTT---C-A-GAA-TTT-CAT-TATCT-AT-CT-CAACAA-TAATTT-T----------------------T--C----T--AGG-AAGTA-T-TTAC--T--TTAA----CT---ATG------ATTTTGCA--TTCTGGG---TA--TATAT-CTTAATggactttctaagctta
gi|15 : aaacgaagaaattcaaaagaaA-TCT-TAT-TATCT-TT-TG-CTGTAC-TAATCT-CAAAATT--------A-AAA--TT--T----C--AAAGAAATA-T-ATAC--T--CTAT----GT---A----------TCTGCA--TTTCTTG---TA--TATAT-TTTCATTCAA
gi|13 : CC-CAACAAA--------A-AAATTAT--T--------AG-AAATAGTGATACGAC--CTAAATGTCTTATATG------TCTTTGCA--TATTTTG---CA--TATAT-TTCCATTGAAAAAAAtat
gi|17 : aa--------A-AAA--AT--T----TCTAAG-AAATA-A-ATAC--T--CTAT----CT---GT--------TTTTGCA--TTTTTCG---TA--CATAT-TTTCATTGAAAGAAaacaaattcttgatcatc
gi|20 : TGCA--TTTTTTG---TA--TA-ATATTTCATTGAAAAAccaaaattcttcatca
Alignments
lowQualScore : 2222 1111111111111
lowQualScore : 5 2 2 33 2 2 33 333 2 4 2 2 2 2 77777 2 2 44 88888888 33 1 1111 2 2 2 0000000000000 444 8888888 33 555 66 33 2
lowQualScore : . . . .. . . .. ... . . . . . . ..... . . .. ........ .. . .... . . . ............. ... ....... .. ... .. .. .
lowQualScore : 0 7 7 11 2 2 11 999 2 2 2 2 4 4 44444 4 2 22 55555555 22 8 5555 4 4 4 2222222222222 777 7777777 44 000 88 99 9
consensus : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTT-CAT-TATC-TAT-TG-CTGTAC-TAATCT-CAAAAAT-A--------A--AATTT-C--AAG-AAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGCA--TTTTTTG---TA--T--ATAT-TTTCATTGAAAAAAA
Reference ( family-4975 ) : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTT-CAT-TATC-TAT-TG-CTGTAC-TAATCT-CAAAAAN-A--------A--AANTT-N--AAG-AAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGCA--TTTTTTG---TA--T--ATAT-TTTCATTGAAAAAAA
gi|1 : AGACAAAAAT-GCACGGTTAACATGTGTTGA-A-AA--CTT---C-AGTA-TTTTCAT-TACC-CAT-TAACT-TAC-TAATCT-GCAAAAT-ATTTTTTTTA--GAC---C--AAA-AAGTA-T-ATAC--TGCCTAA----CT---ATG------ATTTTGCA--TTTTTT----TA--TTTACAT-TTTCATTGAAAAA
gi|10 : aaAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTT-TAT-TATC-TAT-TG-CTGAAC-CAATCT-CAAAAAT-A--------C--ATTTTCT--AAG-ACATT-T-TTAC--T--CTAA----CT---ATG------GTTTTTTAAGTTTTTTcccaaatttattcatcat
gi|11 : gaaatAAAA-T-TCAAAG--AA-ATGTGTTGA-ATAA--TTT---C--GAA-TTT-CAT-TATC-TA--------------AT-T-CAACAAT-A--------A--TTTTT-C--AGG-AAATA-T-TTAC--T--TTAA----CT---ATG------ATTTTGCA--ATTCTGGGGATA--T--ATAT-TTttt
gi|12 : a-T-GCAGGC--AAAATGTGTTGA-A-AA--CTT---C-AGAA-TTT-CAT-TATC-TAT-TG-CTGCAC-TAATCT-CAA----------------------------------A-T-ATAC-------------------TG------CTTTTGCA--CTTTTTG---TA--C--AT-T-TTTCATTTAAAAAGA
gi|13 : CC-CAACAAA-A--------A--AATTA-T--TAG-AAATAGTGATACGAC--CTAAATGTCTTATATG------TCTTTGCA--TATTTTG---CA--T--ATAT-TTCCATTGAAAAAAAaacacaca
gi|14 : aaAGA-AAAT-T-GCGGGT--AACATGT-TTGACA-AA--CTTACCC-AAGAATTT-CGTCTATCCTATCTG-TT-TAC-TAATCTAAAAAAAA-A--------A--AAATT-C--CAGTAAATA-T-Aaacaaattcttgatcatc
gi|15 : atttaaA-TCT-TAT-TATC-TTT-TG-CTGTAC-TAATCT-CAAAATT-A--------A--AATTTCA--AAG-AAATA-T-ATAC--T----------CT---ATG------TATCTGCA--TTTCTTG---TA--T--ATAT-TTTCATTCAAaatac
gi|16 : AAAA-G-GAAGGA--AACGTGTATTTA-A-AA--CTT---C-AGAA-TTT-CAT-TATC-TAT-TG-ATGTAC-TAATCT-CAAAAAA-T--------A--ATTTC-A--AAG-AATTA-T-ATAtat
gi|17 : aaaaaaa-A--------A--AATTT-CT-AAG-AAATA-A-ATAC--T--CTA------T---CTG------TTTTTGCA--TTTTTCG---TA--C--ATAT-TTTCATTGAAAGAA
gi|18 : aAAAA-T-ACAGGA--AACATATGATGA-A-AA--CTA---C-AGGA-TTG-CAT-TATC-AAT-TA--------TAATCT-AAAAccaaaattcttcatca
gi|19 : caaaataaaaaAA-G-GCGGGA--AACATGTATTGA-A-AA--CTT---C-AGGATTTT-CAT-TATC-TAT-------TAC-TACTCT-CAAA
gi|2 : aaaaaggCAGAA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTT-CAT-TATC-TAT-TG-TTGTAC-TAATCT-GAGAAAT-A--------A--AATTTCT--AAG-AAATA-T-TTAC--T--TTAA----CT---ATG------TTTTCGCT--TATTTGG---TA--T--ATAT-TTTCATTGGAGAAAAc
gi|20 : aaaaaaacatTGCA--TTTTTTG---TA--T--A-ATATTTCATTGAAAAAaaaaaaccaaattctt
gi|21 : gtttttttttttgcAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTC-CAG-TAccccaaattcttcat
gi|22 : ACATAA-T-GCTGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTggactttctaagctta
gi|3 : tcaaagaAAAA-TTGCAGGA--AACATGTGTTGA-A-AA--CTT---T-ACGA-TTT-CAT------TAT-TG-CTGTTC-TAATCT-C-AAAAC-A--------A--AATTC-T--AAG-AAATA-T-ATAC--T--CTAA----AT---ACGTTTTTTTTTTTGCA--TTTTTTG---AA--T--ATAT-TTTCATTGAAGAAA
gi|4 : aaAGACAAAA-T-GCAGGT--AACATGTGTTGA-A-AA--CTT---C-AGAA-TTT-CAT-TATC-CAT-TG-CTGTAC-TAATCT-CAAAAAA-A--------A--AAATT-G--AAA-AAATA-T-ATAC--T--CTAA----CT---ATG------ATTTTGCA--TTTTTTG---TA--T--ACAT-TTTCATTGAAAAAAAcccaaattct
gi|5 : CAGGA--CACATGCGTTGC-A-AA--ATT---C-AGGA-TTT-CAT-TATC------G-GTGTAC-TAAT-T-CAAAAAT-A--------A--AATTT-CT-AAG-AAACA-T-ATAC--T--CTAT----CT---ATG------CTTTTGTA--TTTTTTC---TC--T--CT-T-TTTAAAAGAAAAA
gi|6 : -T-GCAGGA--AACATGCATTGA-A-AAAACTC---CGAGGA-TTT-CAT-TATC-TAT-TG-TTAAACCTAATCT-CAAAAAACA--------G--AATTT-CCTGAG-AAATA-T-A----------------CT---A--------GTTTTGCA--ATTTTTA---AAA-T--ATAA-TTTCATTGAAAAAAAtattttcattg
gi|7 : AGAAAAAA-T-GTAGAA--AACAT-T-TTGA-A-AA--CCT---C-AGGA-TTT-CAT-TATA-TTT-TG-CTGTAC-TAATCT--AAAAAT-A--------AATAATTC-T--AGG-AAATA-T-ATAC--T--CTAA----CT---ATC------TTTTTACA--TTTTac
gi|8 : a-T-GCAGGA--AACATGCATTGA-A-AA--CTC---C-AGGA-TTT-CAT-TATC-TAT-TG-TTAACC-TAATCT-CAAAAAC-A--------G--AATTTCT--GAG-AAATA-T-ATA----------------------------GTTTTGCA--ATTTTTA---AAATT--ATAT-TTTCATTGAAAAAAAcatgggggaaaaacat
gi|9 : gAAA-T-TCAAAA--GAAATGTGTTGA-A-AA--TTT---C-AGAA-TTT-CAT-TATC-TAT---------------CT-CAACAAT-A--------A--TTTTT-CT-AGG-AAGTA-T-TTAC--T--TTAA----CT---ATG------ATTTTGCA--TTCTGGG---TA--T--ATAT-CTTAATacc
Alignments
lowQualScore : 222222222222
lowQualScore : 5 2 2 33 2 2 33 333 2 6 2 2 6666666666 2 3 33 33 777777777777 2 2 55555 99999 444 8888888 2 33 555 77 2
lowQualScore : . . . .. . . .. ... . . . . .......... . . .. .. ............ . . ..... ..... ... ....... . .. ... .. .
lowQualScore : 0 7 7 11 2 2 11 999 2 3 2 4 2222222222 2 2 22 22 222222222222 4 4 88888 77777 777 7777777 5 44 000 99 9
consensus : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GCTGTA-CTAATCTC-AAAAATAA--AA--TTT---------C--AAGAAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGC-A--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
Reference ( family-4975 ) : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GCTGTA-CTAATCTC-AAAAATAA--AA--TTT---------C--AAGAAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGC-A--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
gi|1 : AGACAAAAAT-GCACGGTTAACATGTGTTGA-A-AA--CTT---C-AGTATTTTCAT-TACC-CAT-TAACT-TA-CTAATCTG-CAAAAT-----A--TTTTTTTTAGACC--AAAAAGTA-T-ATAC--TGCCTAA----CT---ATG------ATTTTGC-A--TTTTTT----TATTTACAT-TTTCATTGAAAAA
gi|10 : aaAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTTAT-TATC-TAT-T-GCTGAA-CCAATCTC-AAAAATAC--AT--TTT---------CT-AAGACATT-T-TTAC--T--CTAA----CT---ATG------GTTTTTT-AAGTTTTTTcccaaatttattcatcat
gi|11 : gaaatAAAA-T-TCAAAG--AA-ATGTGTTGA-ATAA--TTT---C--GAA-TTTCAT-TATC-TA--------------AT-TC-AACAATAA--TT--TTT---------C--AGGAAATA-T-TTAC--T--TTAA----CT---ATG------ATTTTGC-A--ATTCTGGGGATA--TATAT-TTttt
gi|12 : a-T-GCAGGC--AAAATGTGTTGA-A-AA--CTT---C-AGAA-TTTCAT-TATC-TAT-T-GCTGCA-CTAATCTC-AA----------------------------------A-T-ATAC-------------------TG------CTTTTGC-A--CTTTTTG---TA--CAT-T-TTTCATTTAAAAAGA
gi|13 : CCC-AACAAAAA--AA--TTA---------T--TAGAAATAGTGATACGAC--CTAAATGTCTTATATG------TCTTTGC-A--TATTTTG---CA--TATAT-TTCCATTGAAAAAAAaacacaca
gi|14 : aaAGA-AAAT-T-GCGGGT--AACATGT-TTGACA-AA--CTTACCC-AAGAATTTCGTCTATCCTATCT-GTT-TA-CTAATCTA-AAAAAAAA--AAAATTC---------C--AGTAAATA-T-Aaacaaattcttgatcatc
gi|15 : atttaaA-TCTTAT-TATC-TTT-T-GCTGTA-CTAATCTC-AAAATTAA--AA--TTT---------CA-AAGAAATA-T-ATAC--T----------CT---ATG------TATCTGC-A--TTTCTTG---TA--TATAT-TTTCATTCAAaatac
gi|16 : AAAA-G-GAAGGA--AACGTGTATTTA-A-AA--CTT---C-AGAA-TTTCAT-TATC-TAT-T-GATGTA-CTAATCTC-AAAAA-AT--AA--TTT---------CA-AAGAATTA-T-ATAtat
gi|17 : aaaaaaaAA--AA--TTT---------CT-AAGAAATA-A-ATAC--T--CTA------T---CTG------TTTTTGC-A--TTTTTCG---TA--CATAT-TTTCATTGAAAGAA
gi|18 : aAAAA-T-ACAGGA--AACATATGATGA-A-AA--CTA---C-AGGA-TTGCAT-TATC-AAT-T-A-------TAATCTA-AAAccaaaattcttcatca
gi|19 : caaaataaaaaAA-G-GCGGGA--AACATGTATTGA-A-AA--CTT---C-AGGATTTTCAT-TATC-TAT-------TA-CTACTCTC-AAA
gi|2 : aaaaaggCAGAA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GTTGTA-CTAATCTG-AGAAATAA--AA--TTT---------CT-AAGAAATA-T-TTAC--T--TTAA----CT---ATG------TTTTCGC-T--TATTTGG---TA--TATAT-TTTCATTGGAGAAAAc
gi|20 : aaaaaaacatTGC-A--TTTTTTG---TA--TA-ATATTTCATTGAAAAAaaaaaaccaaattctt
gi|21 : gtttttttttttgcAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTCCAG-TAccccaaattcttcat
gi|22 : ACATAA-T-GCTGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTggactttctaagctta
gi|3 : tcaaagaAAAA-TTGCAGGA--AACATGTGTTGA-A-AA--CTT---T-ACGA-TTTCAT------TAT-T-GCTGTT-CTAATCTC--AAAACAA--AA--TTC---------T--AAGAAATA-T-ATAC--T--CTAA----AT---ACGTTTTTTTTTTTGC-A--TTTTTTG---AA--TATAT-TTTCATTGAAGAAA
gi|4 : aaAGACAAAA-T-GCAGGT--AACATGTGTTGA-A-AA--CTT---C-AGAA-TTTCAT-TATC-CAT-T-GCTGTA-CTAATCTC-AAAAAAAA--AA--ATT---------G--AAAAAATA-T-ATAC--T--CTAA----CT---ATG------ATTTTGC-A--TTTTTTG---TA--TACAT-TTTCATTGAAAAAAAcccaaattct
gi|5 : CAGGA--CACATGCGTTGC-A-AA--ATT---C-AGGA-TTTCAT-TATC-------GGTGTA-CTAAT-TC-AAAAATAA--AA--TTT---------CT-AAGAAACA-T-ATAC--T--CTAT----CT---ATG------CTTTTGT-A--TTTTTTC---TC--TCT-T-TTTAAAAGAAAAA
gi|6 : -T-GCAGGA--AACATGCATTGA-A-AAAACTC---CGAGGA-TTTCAT-TATC-TAT-T-GTTAAACCTAATCTCAAAAAACAG--AA--TTT---------CCTGAGAAATA-T-A--------CTA-------------------GTTTTGCAA--TTTTTAA---AA--TATAA-TTTCATTGAAAAAAAtattttcattg
gi|7 : AGAAAAAA-T-GTAGAA--AACAT-T-TTGA-A-AA--CCT---C-AGGA-TTTCAT-TATA-TTT-T-GCTGTA-CTAATCT--AAAAATAAATAA--TTC---------T--AGGAAATA-T-ATAC--T--CTAA----CT---ATC------TTTTTAC-A--TTTTac
gi|8 : a-T-GCAGGA--AACATGCATTGA-A-AA--CTC---C-AGGA-TTTCAT-TATC-TAT-T-GTTAAC-CTAATCTC-AAAAACAG--AA--TTT---------CT-GAGAAATA-T-ATA----------------------------GTTTTGC-A--ATTTTTA---AAATTATAT-TTTCATTGAAAAAAAcatgggggaaaaacat
gi|9 : gAAA-T-TCAAAA--GAAATGTGTTGA-A-AA--TTT---C-AGAA-TTTCAT-TATC-TAT---------------CTC-AACAATAA--TT--TTT---------CT-AGGAAGTA-T-TTAC--T--TTAA----CT---ATG------ATTTTGC-A--TTCTGGG---TA--TATAT-CTTAATacc
Alignments
lowQualScore : 222222222222
lowQualScore : 5 2 2 33 2 2 33 333 2 6 2 2 6666666666 2 3 33 33 777777777777 2 2 55555 99999 444 8888888 2 33 555 77 2
lowQualScore : . . . .. . . .. ... . . . . .......... . . .. .. ............ . . ..... ..... ... ....... . .. ... .. .
lowQualScore : 0 7 7 11 2 2 11 999 2 3 2 4 2222222222 2 2 22 22 222222222222 4 4 88888 77777 777 7777777 5 44 000 99 9
consensus : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GCTGTA-CTAATCTC-AAAAATAA--AA--TTT---------C--AAGAAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGC-A--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
Reference ( family-4975 ) : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GCTGTA-CTAATCTC-AAAAATAA--AA--TTT---------C--AAGAAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGC-A--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
gi|1 : AGACAAAAAT-GCACGGTTAACATGTGTTGA-A-AA--CTT---C-AGTATTTTCAT-TACC-CAT-TAACT-TA-CTAATCTG-CAAAAT-----A--TTTTTTTTAGACC--AAAAAGTA-T-ATAC--TGCCTAA----CT---ATG------ATTTTGC-A--TTTTTT----TATTTACAT-TTTCATTGAAAAA
gi|10 : aaAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTTAT-TATC-TAT-T-GCTGAA-CCAATCTC-AAAAATAC--AT--TTT---------CT-AAGACATT-T-TTAC--T--CTAA----CT---ATG------GTTTTTT-AAGTTTTTTcccaaatttattcatcat
gi|11 : gaaatAAAA-T-TCAAAG--AA-ATGTGTTGA-ATAA--TTT---C--GAA-TTTCAT-TATC-TA--------------AT-TC-AACAATAA--TT--TTT---------C--AGGAAATA-T-TTAC--T--TTAA----CT---ATG------ATTTTGC-A--ATTCTGGGGATA--TATAT-TTttt
gi|12 : a-T-GCAGGC--AAAATGTGTTGA-A-AA--CTT---C-AGAA-TTTCAT-TATC-TAT-T-GCTGCA-CTAATCTC-AA----------------------------------A-T-ATAC-------------------TG------CTTTTGC-A--CTTTTTG---TA--CAT-T-TTTCATTTAAAAAGA
gi|13 : CCC-AACAAAAA--AA--TTA---------T--TAGAAATAGTGATACGAC--CTAAATGTCTTATATG------TCTTTGC-A--TATTTTG---CA--TATAT-TTCCATTGAAAAAAAaacacaca
gi|14 : aaAGA-AAAT-T-GCGGGT--AACATGT-TTGACA-AA--CTTACCC-AAGAATTTCGTCTATCCTATCT-GTT-TA-CTAATCTA-AAAAAAAA--AAAATTC---------C--AGTAAATA-T-Aaacaaattcttgatcatc
gi|15 : atttaaA-TCTTAT-TATC-TTT-T-GCTGTA-CTAATCTC-AAAATTAA--AA--TTT---------CA-AAGAAATA-T-ATAC--T----------CT---ATG------TATCTGC-A--TTTCTTG---TA--TATAT-TTTCATTCAAaatac
gi|16 : AAAA-G-GAAGGA--AACGTGTATTTA-A-AA--CTT---C-AGAA-TTTCAT-TATC-TAT-T-GATGTA-CTAATCTC-AAAAA-AT--AA--TTT---------CA-AAGAATTA-T-ATAtat
gi|17 : aaaaaaaAA--AA--TTT---------CT-AAGAAATA-A-ATAC--T--CTA------T---CTG------TTTTTGC-A--TTTTTCG---TA--CATAT-TTTCATTGAAAGAA
gi|18 : aAAAA-T-ACAGGA--AACATATGATGA-A-AA--CTA---C-AGGA-TTGCAT-TATC-AAT-T-A-------TAATCTA-AAAccaaaattcttcatca
gi|19 : caaaataaaaaAA-G-GCGGGA--AACATGTATTGA-A-AA--CTT---C-AGGATTTTCAT-TATC-TAT-------TA-CTACTCTC-AAA
gi|2 : aaaaaggCAGAA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GTTGTA-CTAATCTG-AGAAATAA--AA--TTT---------CT-AAGAAATA-T-TTAC--T--TTAA----CT---ATG------TTTTCGC-T--TATTTGG---TA--TATAT-TTTCATTGGAGAAAAc
gi|20 : aaaaaaacatTGC-A--TTTTTTG---TA--TA-ATATTTCATTGAAAAAaaaaaaccaaattctt
gi|21 : gtttttttttttgcAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTCCAG-TAccccaaattcttcat
gi|22 : ACATAA-T-GCTGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTggactttctaagctta
gi|3 : tcaaagaAAAA-TTGCAGGA--AACATGTGTTGA-A-AA--CTT---T-ACGA-TTTCAT------TAT-T-GCTGTT-CTAATCTC--AAAACAA--AA--TTC---------T--AAGAAATA-T-ATAC--T--CTAA----AT---ACGTTTTTTTTTTTGC-A--TTTTTTG---AA--TATAT-TTTCATTGAAGAAA
gi|4 : aaAGACAAAA-T-GCAGGT--AACATGTGTTGA-A-AA--CTT---C-AGAA-TTTCAT-TATC-CAT-T-GCTGTA-CTAATCTC-AAAAAAAA--AA--ATT---------G--AAAAAATA-T-ATAC--T--CTAA----CT---ATG------ATTTTGC-A--TTTTTTG---TA--TACAT-TTTCATTGAAAAAAAcccaaattct
gi|5 : CAGGA--CACATGCGTTGC-A-AA--ATT---C-AGGA-TTTCAT-TATC-------GGTGTA-CTAAT-TC-AAAAATAA--AA--TTT---------CT-AAGAAACA-T-ATAC--T--CTAT----CT---ATG------CTTTTGT-A--TTTTTTC---TC--TCT-T-TTTAAAAGAAAAA
gi|6 : -T-GCAGGA--AACATGCATTGA-A-AAAACTC---CGAGGA-TTTCAT-TATC-TAT-T-GTTAAACCTAATCTCAAAAAACAG--AA--TTT---------CCTGAGAAATA-T-A--------CTA-------------------GTTTTGCAA--TTTTTAA---AA--TATAA-TTTCATTGAAAAAAAtattttcattg
gi|7 : AGAAAAAA-T-GTAGAA--AACAT-T-TTGA-A-AA--CCT---C-AGGA-TTTCAT-TATA-TTT-T-GCTGTA-CTAATCT--AAAAATAAATAA--TTC---------T--AGGAAATA-T-ATAC--T--CTAA----CT---ATC------TTTTTAC-A--TTTTac
gi|8 : a-T-GCAGGA--AACATGCATTGA-A-AA--CTC---C-AGGA-TTTCAT-TATC-TAT-T-GTTAAC-CTAATCTC-AAAAACAG--AA--TTT---------CT-GAGAAATA-T-ATA----------------------------GTTTTGC-A--ATTTTTA---AAATTATAT-TTTCATTGAAAAAAAcatgggggaaaaacat
gi|9 : gAAA-T-TCAAAA--GAAATGTGTTGA-A-AA--TTT---C-AGAA-TTTCAT-TATC-TAT---------------CTC-AACAATAA--TT--TTT---------CT-AGGAAGTA-T-TTAC--T--TTAA----CT---ATG------ATTTTGC-A--TTCTGGG---TA--TATAT-CTTAATacc
blockSeqs : C . T . C T AA ACC G A C C TGTTAAAC A T AT AA CCT G G GAC AATGT TAT TTTTTTT A AG GGA AT A
blockSeqs : C . . . . . . . . T . . TGCTGAA . T . . CT . . T A . G . . . . .
blockSeqs : A . . . . . . . . . . . TGCTGCA . A . . CA . . T A . A . . . . .
blockSeqs : . . . . . . . . . . . . CTGTTTA . A . . CA . . T A . C . . . . .
blockSeqs : . . . . . . . . . . . TGCTGTA . T . . CT . . T A . T . . . . .
blockSeqs : . . . . . . . . . . . TGATGTA . T . . CT . . T A . T . . . . .
blockSeqs : . . . . . . . . . . . TGTTGTA . C . . CT . . T T . T . . . . .
blockSeqs : . . . . . . . . . . . TGCTGTT . A . . CT . . T A . T . . . . .
blockSeqs : . . . . . . . . . . . TGCTGTA . T . . CT . . T A . A . . . . .
blockSeqs : . . . . . . . . . . . TGCTGTA . C . . C . . T . . C . . . . .
blockSeqs : . . . . . . . . . . . TGTTAAC . T . . T . . T . . G . . . . .
blockSeqs : . . . . . . . . . . . GGTGTA . C . . C . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . TA . T . . T . . . . . G . . . . .
blockSeqs : . . . . . . . . . . . TA . . . . G . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : .
blockSeqCons : ** CT********** T**** **
originalCons : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GCTGTA-CTAATCTC-AAAAATAA--AA--TTT---------C--AAGAAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGC-A--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
finalCons : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GCTGTA-CTAATCTC-AAAAATAA--AA--TTTCT----------AAGAAATA-T-ATACT----CTAA----CT---ATG------NTTTTGC-A--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
Alignments
lowQualScore : 11111111
lowQualScore : 5 2 2 33 2 2 33 333 2 6 2 2 6666666666 222 3 2 00000000 1 2 2 55555 99999 444 8888888 2 33 555 77 2
lowQualScore : . . . .. . . .. ... . . . . .......... ... . . ........ . . . ..... ..... ... ....... . .. ... .. .
lowQualScore : 0 7 7 11 2 2 11 999 2 3 2 4 2222222222 888 2 4 99999999 5 4 4 88888 77777 777 7777777 5 44 000 99 9
consensus : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GCTGTA-CTAATCT-C-AAAAATAAA-ATTT--------CTAAGAAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGC-A--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
Reference ( family-4975 ) : AGACAAAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GCTGTA-CTAATCT-C-AAAAATAAA-ATTT--------CTAAGAAATA-T-ATAC--T--CTAA----CT---ATG------NTTTTGC-A--TTTTTTG---TA--TATAT-TTTCATTGAAAAAAA
gi|1 : AGACAAAAAT-GCACGGTTAACATGTGTTGA-A-AA--CTT---C-AGTATTTTCAT-TACC-CAT-TAACT-TA-CTAATCT-G-CAAAAT----ATTTTTTTTAGACCAAAAAGTA-T-ATAC--TGCCTAA----CT---ATG------ATTTTGC-A--TTTTTT----TATTTACAT-TTTCATTGAAAAA
gi|10 : aaAA-T-GCAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTTAT-TATC-TAT-T-GCTGAA-CCAATCT-C-AAAAATACA-TTTT--------CTAAGACATT-T-TTAC--T--CTAA----CT---ATG------GTTTTTT-AAGTTTTTTcccaaatttattcatcat
gi|11 : gaaatAAAA-T-TCAAAG--AA-ATGTGTTGA-ATAA--TTT---C--GAA-TTTCAT-TATC-TA--------------AT-T-C-AACAATAAT-TTTT--------C-AGGAAATA-T-TTAC--T--TTAA----CT---ATG------ATTTTGC-A--ATTCTGGGGATA--TATAT-TTttt
gi|12 : a-T-GCAGGC--AAAATGTGTTGA-A-AA--CTT---C-AGAA-TTTCAT-TATC-TAT-T-GCTGCA-CTAATCT-C-AA-----------------------------A-T-ATAC-------------------TG------CTTTTGC-A--CTTTTTG---TA--CAT-T-TTTCATTTAAAAAGA
gi|13 : CC-C-AACAAAAAA-ATTA--------TTA-GAAATAGTGATACGAC--CTAAATGTCTTATATG------TCTTTGC-A--TATTTTG---CA--TATAT-TTCCATTGAAAAAAAaacacaca
gi|14 : aaAGA-AAAT-T-GCGGGT--AACATGT-TTGACA-AA--CTTACCC-AAGAATTTCGTCTATCCTATCT-GTT-TA-CTAATCTAA-AAAAAAAAA-AATT--------CCAGTAAATA-T-Aaacaaattcttgatcatc
gi|15 : atttaaA-TCTTAT-TATC-TTT-T-GCTGTA-CTAATCT-C-AAAATTAAA-ATTT--------CAAAGAAATA-T-ATAC--T----------CT---ATG------TATCTGC-A--TTTCTTG---TA--TATAT-TTTCATTCAAaatac
gi|16 : AAAA-G-GAAGGA--AACGTGTATTTA-A-AA--CTT---C-AGAA-TTTCAT-TATC-TAT-T-GATGTA-CTAATCT-C-AAAAA-ATA-ATTT--------CAAAGAATTA-T-ATAtat
gi|17 : aaaaaaaAAA-ATTT--------CTAAGAAATA-A-ATAC--T--CTA------T---CTG------TTTTTGC-A--TTTTTCG---TA--CATAT-TTTCATTGAAAGAA
gi|18 : aAAAA-T-ACAGGA--AACATATGATGA-A-AA--CTA---C-AGGA-TTGCAT-TATC-AAT-T-A-------TAATCT-A-AAAccaaaattcttcatca
gi|19 : caaaataaaaaAA-G-GCGGGA--AACATGTATTGA-A-AA--CTT---C-AGGATTTTCAT-TATC-TAT-------TA-CTACTCT-C-AAA
gi|2 : aaaaaggCAGAA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTTCAT-TATC-TAT-T-GTTGTA-CTAATCT-G-AGAAATAAA-ATTT--------CTAAGAAATA-T-TTAC--T--TTAA----CT---ATG------TTTTCGC-T--TATTTGG---TA--TATAT-TTTCATTGGAGAAAAc
gi|20 : aaaaaaacatTGC-A--TTTTTTG---TA--TA-ATATTTCATTGAAAAAaaaaaaccaaattctt
gi|21 : gtttttttttttgcAGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTCCAG-TAccccaaattcttcat
gi|22 : ACATAA-T-GCTGGA--AACATGTGTTGA-A-AA--CTT---C-AGGA-TTggactttctaagctta
gi|3 : tcaaagaAAAA-TTGCAGGA--AACATGTGTTGA-A-AA--CTT---T-ACGA-TTTCAT------TAT-T-GCTGTT-CTAATCT-C--AAAACAAA-A-TT--------CTAAGAAATA-T-ATAC--T--CTAA----AT---ACGTTTTTTTTTTTGC-A--TTTTTTG---AA--TATAT-TTTCATTGAAGAAA
gi|4 : aaAGACAAAA-T-GCAGGT--AACATGTGTTGA-A-AA--CTT---C-AGAA-TTTCAT-TATC-CAT-T-GCTGTA-CTAATCT-C-AAAAAAAAA-AATT---------GAAAAAATA-T-ATAC--T--CTAA----CT---ATG------ATTTTGC-A--TTTTTTG---TA--TACAT-TTTCATTGAAAAAAAcccaaattct
gi|5 : CAGGA--CACATGCGTTGC-A-AA--ATT---C-AGGA-TTTCAT-TATC-------GGTGTA-CTAAT-T-C-AAAAATAAA-ATTT--------CTAAGAAACA-T-ATAC--T--CTAT----CT---ATG------CTTTTGT-A--TTTTTTC---TC--TCT-T-TTTAAAAGAAAAA
gi|6 : -T-GCAGGA--AACATGCATTGA-A-AAAACTC---CGAGGA-TTTCAT-TATC-TAT-T-GTTAAACCTAATCT-CAAAAAACAGA-ATTTC-------CTGAGAAATA-T-A--------CTA-------------------GTTTTGCAA--TTTTTAA---AA--TATAA-TTTCATTGAAAAAAAtattttcattg
gi|7 : AGAAAAAA-T-GTAGAA--AACAT-T-TTGA-A-AA--CCT---C-AGGA-TTTCAT-TATA-TTT-T-GCTGTA-CTAATCT---AAAAATAAATAATT--------CTAGGAAATA-T-ATAC--T--CTAA----CT---ATC------TTTTTAC-A--TTTTac
gi|8 : a-T-GCAGGA--AACATGCATTGA-A-AA--CTC---C-AGGA-TTTCAT-TATC-TAT-T-GTTAAC-CTAATCT-C-AAAAACAGA-ATTT--------CTGAGAAATA-T-ATA----------------------------GTTTTGC-A--ATTTTTA---AAATTATAT-TTTCATTGAAAAAAAcatgggggaaaaacat
gi|9 : gAAA-T-TCAAAA--GAAATGTGTTGA-A-AA--TTT---C-AGAA-TTTCAT-TATC-TAT---------------CT-C-AACAATAAT-TTTT--------CTAGGAAGTA-T-TTAC--T--TTAA----CT---ATG------ATTTTGC-A--TTCTGGG---TA--TATAT-CTTAATacc