lowQualScore : 111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 1 11 333333333333 1 222 1111 333333333 1111 222 1 222 444444444444444444444 33333333 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222222 222222 2222222 77777777777777 11111 111 111 5555555555555555 1 444444444444444444444444444444444444444444444444444444 1111 3333333333333 1 333333333333333 1 1 33333333333 11 4444
lowQualScore : 6666 3 6 4 4 22 333333333333 5 888 8 0 9999 2 2 666666666 4444 8 8 5 7 222 0 333 111111111111111111111 4 11111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6666666666666 2 888888 3333333 99 55555555555555 55555 999 55 555 1 2222222222222222 9 8 77 8 7 3 1 999999999999999999999999999999999999999999999999999999 3 77 6 4444 4 8 6666666666666 1 99 1 6 000000000000000 11 4 4 2 0 6 33333333333 6 9 1 6 22 2 1111
lowQualScore : .... . . . . .. ............ . ... . . .... . . ......... .... . . . . ... . ... ..................... . ........ .................................................................................................................................................. ............. . ...... ....... .. .............. ..... ... .. ... . ................ . . .. . . . . ...................................................... . .. . .... . . ............. . .. . . ............... .. . . . . . ........... . . . . .. . ....
lowQualScore : 0000 0 0 0 7 00 000000000000 0 555 3 7 3333 0 5 888888888 8888 0 0 0 2 555 5 222 222222222222222222222 0 22222222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3333333333333 5 888888 3333333 33 33333333333333 11111 222 66 000 4 8888888888888888 0 8 88 0 8 2 8 666666666666666666666666666666666666666666666666666666 7 33 7 2222 6 2 2222222222222 4 00 2 5 111111111111111 44 4 0 0 0 2 00000000000 7 0 0 0 00 5 5555
consensus : CCCANCTCCAGTTGNCCGACGATNGTTGTTTCCCNTTCTTCTTTCCTTAGACTTTTTGCCCAAGAGTGTGGACTGGGCGTTAAATC-GT-AATGGTCTNGC-TA-TCTGTGAGAAATTCCTAA-TA-AAT-TTCCNGTAGTANCCTGCGAAACCGA-GAAANTTCCTAA----CTTCTTCTGGNGTT-TTTGGTATTGGCCAG-GNCT-------T--AACC-TTACTNGCCTTGTC-TGG--GNTCGG-C--TCN------A----CTCCNT---CGGC--CGA---A--AC-ATGT--CCAACA------TACTCGACC---TT--CCTC-TTAAA--AAATCGA--CACTTGGAT--GGAG-AAAGTTTCAA------TCCTGAA-TT-ATGNNTTCTC-------TG-A---GAACTCNTTCTAGTGTTTCNAAATGTTCCTCAAATGT--CCGTG-------AGAATACGATNA-CGTCGTCCAAGTAGATAANGCAAATNCTCAAAGTN---AAT----ATCTC-CA---AAACA-TG-TCC-T------CCATNA-ATC-GCT----GATATGTCGCNGG-AGCATTC--GCGAAT-CCAAAAGGCATGCGTT-C-AAATTC--GTAAAATCCNAGNGGTCCAA-CTGTGAAA---GC-GGT-CTCTCCTTATGGTNCTCGGAACGATCTCG
Reference ( gi|5 ) : CCCATTTGCAGTTGACAGACGATTGTTGTTTCCCTTTTTTCTTTTTTTA-----TTTG---AAGATTGTGGACTAGGCGTAAGATCCGTAAGTGGTCTGGC-AAGTTTG-GAGAAATTTCTGA-TA-AAT-TTCCGGTAGTAACCAATAAATCCTA-GAAATTTCCCGA----CCTCTTCAGGTGTT-CTTGGTGTTGGCCAG-GACC-------T--GACT-TTATCCACCTTGTC-TGG--AATTGG-C--TCT------A----TTCCAT---TGGC--CGA---G--AT-ATGT--CCAACA------TATTTAACC---TT--AGTC-TGGAA--AAATTGG--CACTTGGAT--GGAG-ACAGTTTCAA------TCCTGAA-TT-ATGTATTCTC-------TGCA---GAACTCTTTCCAATCTTTCGAGATGTTCATCAAATGT--CCGTG-------ATAATACTATGA-TATCGTCCAAGTAGATAATGCATATGCT-AAGGTT---AAT----ATCT--GA---AAATA-TG-TCC-T------CCATCA-GTC-GTT----GGTACGTGGCAGG-GGCATTG--GCTAAT-CCAAAAGACATGCGCT-C-AAACTC--GAAAAATCCAAGTGGTCCGA-CAGTGAAG---GC-GGTGCGCCCTTTGTGGTTCTCCG--CTATCTCG
gi|6 : CCCATCTCCAGTTGACCGACGATAATTGTTTCCCTTTCTTCTT
gi|15 : aatctttgaaattttcagtgatgtaccatttcaaagctaaacactctagcttacgggcaggataattttcttcagctggtgtaagtcctctgcttgcgtatccaatgactcgcttcatcccatcctggtcttggtaaagaatggttccaattcctcaggtactagcatcagtatgcagttgaaatcgtcatgtctgggtattcatgatcaagtataggtggcgatatcaagtgctgccgaaggacattgaaagcttcttgttgttctcaacCCCAACTCCAATTGCCTGATGATTGTTGTTTCCCATTcgaag
gi|3 : atcaagagcctcttatagttctcgaTTTCTTCTGTTTCTTTCCTTAGACTTTTTGCCCAAGAGTGTGAA---GGCATTAAGTCAGTCAATGGTCCGTCTCACTCTA-TAAAGCTGTCTC--TAGAAT-CGTCTATAGAAGCCGACAAAACC-A-GAAAAT-CTCGAACAGCCTCT---GGTGTT---TGGT-TTGGCCAGTGAT--------T--GACTCTTCTCAGTCTTGTC-TGATCAAT----C--TCT------A----CACCCT---TCTC--TGA---ACAAT-GTGTA-CCAGAA-------ACTTGACC---TT--CCTT-TTGAA--AAATCG---CACTTGGAT--GGAG-CAAGTTTgtaccatgaag
gi|16 : tcTGGACTGGGTGTTAAATCCGTAAGTGGTCTGGC-AAGTTTT-GAAAAATTTCTAA-TG-AAT-TTCCGGTAGTAaagttggcctccttggattttgttgagccacaagctgtagtgttaactggaatgtccctcaaacgtcttgcaaaaatcatcacactctcatgaatttaacacagcatacttcaaattcagcatcagctatatggttctccatcaatcagctgatatgtcgctggtagaatttgtgagtccaaaaggcatcgttacaataaaatcctaatggtccaactgaaaaatgcagtacgctccttatgaacttcgaacgatctcgcactttggatatccggatgtcattcatgagtaaaagaacttatgttcccgccatacattccaaagaatcctcaatcgtggaagagcgta
gi|2 : AGGATC----AATGGCCTCGC-TA-TCTGTGAGGAATTCAAAA-TA-AAT-ATCCGGTAGTAACCTGCGAAACCAA-AAAACTGTCTAA----CTTCCTCTGGAGTT-TTTGGAACGGACCAG-TTCT-------T--AACC-TTACTTGCCTTGTC-AGG---GTAGG-G--TCTGCCTGGA----CTCCTT---CGGG--TGA---A--ACAATGTGGCCAACA------TA
gi|8 : tgaagtaaatctgtcctttaacaggtcaaaagttctgtcttgggctggtccccatgttcctctaggcttcttaccagtggccatgatgAATGGTCTCGC-TA-TCTGTGAGAAATTCAAAA-TA-AAT-TTC--GCGGTACCCTGCGAAACAAA-GAACTGTCT-AA----CTTCT-CTGGAGTT-TT----GTTGGACGG-GCCCAGTTCTTT--AACC-TTACTTACCTTGTC-AGG--GTTTGC-A--TGG------A----CTCCTT---CAGC--TGA---A--ACAATGT--gnnnnnnnnnnnnnnnnnnnnnnnnnttaccttggtcataagaaagaaacactttttggaagagaattttaacctctgtcgaaaataagttctaaacgctgaaatgttcttcaaatgtaattggagcaaacgattacatcgtccacataaatgaaacaaattttcaatgtagatcggcctaacattcttgcttgaagtctctgatatgtcgcgggaggtttacaagtccaaaaggcatgttttttgaattcgaagaatccaaggggtccaatctgtgaccaaagccgttctctgtttaactttctttcagaatttcaatttgatgatatccggctttcatggatccaaaatggtgaaatactggtttccatagaggaatccaagatatcctcaatttgggggaggcgtag
gi|4 : tctgtcttgagctggtccccatgtccaggaagtgtgggggtatctttctttcctctaggcttcttaccagtggccatgatgtcgatcAAATTCCTGAATA-AATCTTCCTAAAGTATCCTGCAAATCCGATGAA--TTCCTAA----CTTCTTC-TGTATTGTTTGGTATTGGCCAA-G-CT-------TACAACT-TTGGAAATCTTTTC--AG--CGTCGGTT--TCT------ACAACTTC------TGAC--AAAAC-A--AC-ATGT--CCTACATGTACGTATTCAACCCATTT----TC-TTAAA--GAATTTA--CACTT---T--TTAGTAAAGTTTCAAATTTGCTTCT----TTGATGCGCACTC--------G-A---AAACTGGTTGTAGTGTCTCTCGATGCTTTTGAAATGT-----TGAGAAAAAAGAAAACAATTA-CGTCATC--AATAAA-AATGCA---GC--AAGTTTTCAAATGTAGATCTCCCA---AAACA----TCCAT------GCATTA-AGC-GCT----GGTATGTAGCTGG-TGC--CC--GCAAAA-ACCAATGACATACGGT-T-AAATTC--ATATAAGCTTAGCGGACCAA-CTGTAAAT---ACTGGT-CTCGCTTTATGGTTggcca
gi|7 : gctaCTTTTC-TTG--A-TCGA-CCTTCC------T----TCCCATCT-TAAC--CAT---A--AT-ATGA--CCAAGA------TACCCAACC---TTTTATTC---AAA--GGAATGA--CACTTGGA-----AG-ATA--TT--A------TCTTGAAACC-ATGATTTCTCAATCTGTTGAAAATGAACTCT---AAAT-------GATGTGCA---AATGA--CTATG-------AAAATATGAAGAATATCGTCGAAGTAGAGAAGACATAT-CT-AAA------AAT----ATT-----------TA-TC-ACC-TAAACAACCATTA-ATC-TTTGAAAGGTACTTGG--------ATTGTTGCAAAGACTAAAGGACATGCGTA-C-AAATTCATGTAAA--CCAATTGGTtcgtagaattccaccttgatgtaaccgactcatatcggataaacggagatgtacttattccagctaaacagtctaacatttcccccatcccttggtcattaggcgtctctcttcgtccttttgttaattggcgatattcgatgcaaa
gi|1 : TGTCATGG--GTCTGG-C--TC-------A----CTCCAT---CGGTTGCGACACA--AT-ATGT--CC-ACA------TACT--ACT---TC----TCATGAAAGGAAA------CACTT--ATTAGGAG---AGCTTCA
gi|11 : gaaattagcttgtcctttagaaagttaaatgcagcttcctgctccaggtcgcatctccatttggggtaccgactgccatgacgtcaatcagtggcttggctaccttagcgaaatctttgatgaacttgaattactattgcatgattcctgtcatacccgcaacgcagaagtgatctatcttactggattagatggtccgaattcttgacctttggaacttcGTC-TGG--GTCTGG-C--TCA------A----CTCCATCTTTGGA--CAC---A--AT-ATGT--CCTACA------TACTTGACT---TT--CCTC-ATGAA--AAA--GGAACACTTCTTA--GGAG-AAAGCTTCAG------CCCgcagtcgtttcttagccgtttggacattgctgtatctgtaaggtgctcctggaagagagggaaaatctcttaagtatctaaataataaaacaatcttaagtgaagatcacctagcactgttcttgagctgttgtaggtgcgggggatatcgctatcgagctcattttgtctaaatcaaaattcataaaatccgagaggtccggcagtaaaagcagttctctccttatggtcttcggtaatctctatctgatgatatcccgacttcatatccaggacactgaagtacgtatttcctgatagagagtctagaatttcctcaatccttggaagagcatagttgtctttaatggttcttgcgttcaactgtcgataatcaatgcaaa
gi|12 : TGGAT--GTAG-ACGCTTTCAA------TCCTGAA-TT-ATGTATTCTC-------TGTA---GAACGCCTTCCAATGATTCGAAATGTTCCTTAAAAGT--CCTTG-------AGAATACTATAA-TGTCGTTCAAGTAGATAATGCatagtttctaatccgttgaaacacttgctgtagtctgtcaaggtgctctctgaaaga
gi|10 : attggtctgcaTCTAGTCTTTCTAAATGCTGCTCAAAACT--TGATG-------AGTACACCAAAA-TATCGTCTAAGTAGATAA-GTAGAAACTCAAAGTT---CTT----GTCTC-CC---AAACA-TG--CT-T------CCATCA-ATC-GTT----G
gi|2 : attttcaaaccatgttgagtaagtctagtgaatacaaaaGAAATGTTCTTCAAATGTAATTGGA-------GCAA-ACGATTA-CATCGTCCACATAAATGAAACAAATTTTCAATGTA---GATCG--GCCT--------AACA-T--TCT-T------GCTTGAAGTC-TCT----GATATGTCGCGGG-AG-GTTT--ACAAGT-CCAAAAGGCATGTTTT-TTGAATTC--GAAGAATCCAAGGGGTCCAATCTGTGAaaaggttcctggactattgcacaaa
gi|14 : tgaagtaaatctgtcctttaacaggtcaaaagttctgtcttgggctggtccccatgttcctctaggcttcttaccagtggccatgatgaggatcaatggcctcgctatctgtgaggaattcaaaataaatatccggtagtaacctgcgaaaccaaaaaactgtctaacttcctctggagtttttggaacggaccagttcttaaccttacttgccttgtcagggtagggtctgcctggactccttcgggtgaaacaatgtggccaacatagnnnnnnnnnnnnnnnnnnnnnnnnnttaccttggtcataagaaagaaacactttttggaagagaattttaacctctgtcgaaaataagttctaaacgctTCATCTAAATAAATAAAACAAATCTT-CAAGTG---AAG----ATC----ACCTAGACACTG-T---T------CCTGGA-GGC-GTT----GATAGGTTGCGGG-GGCATTC--GCTAAT-Cccaaagccgttctctgtttaactttctttcagaatttcaatttgatgatatccggctttcatggatccaaaatggtgaaatactggtttccatagaggaatccaagatatcctcaatttgggggaggcgtag
gi|3 : tataattaagATA-TGGTTC-T------CCATCA-ATCAGCT----GATATGTCGCTGGTAGAATTT--GTGAGT-CCAAAAGGCAT-CGTTAC-AA--T-----AAAATCCTAATGGTCCAA-C--TGAAAAATGC-AGTACGCTCCTTATGA-ACTTCGAACGATCTCG
gi|1 : tctttcttctgtttctttccttagactttttgcccaagagtgtgaaggcattaagtcagtcaatggtccgtctcactctataaagctgtctctagaatcgtctatagaagccgacaaaaccagaaaatctcgaacagcctctggtgtttggtttggccagtgattgactcttctcagtcttgtctgatcaatctctacacccttctctgaacaatgtgtaccagaaacttgaccttccttttgaaaaatcgcacttggatggagcaagtttaagttggcctccttggattttgttgagccacaagctgtagtgttaactggaatgtccctcaaacgtcttgcaaaaatcatcacactctcatgaatttaacacagcatacttcaaattcagcatcagct-AAATTC--ATAAAATCCGAGAGGTCCGG-CAGTAAAA---GC-AGTTCTCTCCTTATGGTCTTCGG--TAATCTCcactttggatatccggatgtcattcatgagtaaaagaacttatgttcccgccatacattccaaagaatcctcaatcgtggaagagcgta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AACCAATTCATATAAGCTAGCGGACCAACTGTAAATACTTGGTCTCGCTTTAGGTTTCGAGAATTTCCACCTTGATGTACCGACTCATTCGATAACGGGAGATGTACTTATTCCAGCTAAAACAGTCTAACATTTCCCCCATCCCTTTTGGTCATTAGGCGTCTCTCTTCGTCCTTTTTGTTAATTGGCGATATTCGATGCAAA
Unaligned ( gi|13 ): ACCAACTGTAAAGGCTGTTCTCTCTTTATGTTGTTCATAGATTTCCACCTGATGGTATCCCGACTTCATATCAATAACAGAGAAGTACTTGTTTCCTGCTAAACAGTCTAACATTTCC
Alignments
lowQualScore : 2 2222 22222222222 4444 1 1111 1111 11 1 11 1111 111111111 11111 1 11111111 111 11 111 111111 22222222 11111111 3333333333333333333333333 11111111 111 333333333333333 3333333333333333333 11 11 1111 11111111 1 11 2222
lowQualScore : 1 1 3 1 1 0 0 77 2 9999 44444444444 6 4 3 2222 6 1 6666 0 2222 0 5 33 3 1 7 6 2 6 55 66 1 4 6 33 99 33 3 6 6 5555 99 6 888888888 99999 1 5 1 6 1 33333333 777 11 555 5 666666 77 1 5 2 1 77 55555555 88888888 5 2 1 3333333333333333333333333 5 77 77 0 66666666 000 555 5 9999 1 5 0 222222222222222 9 5 1 1 55 0 5 88 6 66 99 888888 6666666666666666666 1 5 5 3 5 1 99999 11 6 6 11 8 888 0 1 1 1 5 1111 77777777 5 1 1 33 8 0000
lowQualScore : . . . . . . . .. . .... ........... . . . .... . . .... . .... . . .. . . . . . . .. .. . . . .. .. .. . . . .... .. . ......... ..... . . . . . ........ ... .. ... . ...... .. . . . . .. ........ ........ . . . ......................... . .. .. . ........ ... ... . .... . . . ............... . . . . .. . . .. . .. .. ...... ................... . . . . . . ..... .. . . .. . ... . . . . . .... ........ . . . .. . ....
lowQualScore : 0 0 7 0 0 7 0 00 5 8888 00000000000 4 0 8 6666 0 0 4444 8 1111 4 7 66 0 0 5 3 0 7 00 55 8 2 7 55 22 33 0 7 7 0000 22 7 888888888 66666 0 7 4 6 0 99999999 555 11 666 4 444444 66 0 7 0 0 99 44444444 55555555 0 1 0 6666666666666666666666666 7 99 66 3 44444444 333 555 0 6666 0 0 6 000000000000000 6 0 0 1 22 5 9 44 6 44 66 444444 7777777777777777777 0 7 7 4 3 0 44444 00 3 7 22 0 333 6 3 0 0 7 4444 99999999 7 4 4 00 0 1111
consensus : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGAGTG----TGGACTGGGCGTTAAATCCGT-AAGTGGTCTGGCT-A-TCTGTGAGAAA----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-AGTTC-TT--GAC-CTT----ACTNACCTTGTC----TGGGNTC-GG-CTCNACTCCNTC---GGN--CGA---AAC-ATGT---CCAACA------TACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTTCAA------T-------CCT-------GAA-TT-NTGNNTTCTCT-G-AGA-ACNNGTTNT-AG-TGT-T--TCGAAATGCTC-CTCAAATGT--CC-GTG-------AGAATACNA-TNACGTCGTC-CAAGTAGATAANGCAN-ATNCT-CAAA-GTNNAT--ATCTCCNAA--ACA-TG-TCC-TCCATCAA-TC-GCTGATANGTNGCTGG-AGCGTT-CGCAAAT-CCAAAAGACATG-CGTT-CAAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
Reference ( family-4779 ) : CCCANCTCCAGTTGNCCGACGATNGTTGTTTCCCNTTCTTCTTTCCT-TAGACTTTTTGCCCAAGAGTG----TGGACTGGGCGTTAAATC-GT-AA-TGGTCTNGCT-A-TCTGTGAGAAA----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCGA-GAAANTTCCTAACTTCTT-CTGGNGTTT--TTGGTATTGG-CC-AGGNC-TT--AAC-CTT----ACTNGCCTTGTC----TGGGNTC-GG-CTCNACTCCNTC---GGC--CGA---AAC-ATGT---CCAACA------TACTCGACCT-TCCTCTTAAAA--AATCG----ACACTTGG--ATGGAG-AAAGTTTCAA------T-------CCT-------GAA-TT-ATGNNTTCTCT-G-AGA-ACTCNTTCT-AG-TGT-T--TCNAAATGTTC-CTCAAATGT--CC-GTG-------AGAATACGA-TNACGTCGTC-CAAGTAGATAANGCAA-ATNCT-CAAA-GTNAAT--ATCTCCAAA--ACA-TG-TCC-TCCATNAA-TC-GCTGATATGTCGCNGG-AGCATT-CGCGAAT-CCAAAAGGCATG-CGTT-CAAATTC--GTAAAATCCNAGNGGTCCAA-CTGTG---AA-A-G-C--GG-T-CTCTCCTTATGGTNCTCG-GAACGATCTCG
gi|1 : AA----TTACT-ATTGCATGATTCCTGTCATACCC-GC--AACGCA-GAAGTGATCTA---TCTTACTGGA------TTAG-ATGGT-CCGAATTC-TT--GAC-CTTTGGAACTT---CTGTCA---TGGGTCT-GG-CTC-ACTCCATC---GGTTGCGACACAAT-ATGT---CC-ACA------TACT--AC---TTCTCATGAAAGGAA-------ACACTT----ATTAGG-AGAGCTTCA
gi|1 : gaaattagcttgtcctttagaaagttaaatgcagcttcctgctccaggtcgcatctccatttggggtaccgactgccatgacgtcaatcagtggcttggctaccttagcgaaatctttgatgaacttgAAATTC--ATAAAATCCGAGAGGTCCGG-CAGTA---AA-A-G-C--AGTT-CTCTCCTTATGGTCTTCG-GTA--ATCTCgcagtcgtttcttagccgtttggacattgctgtatctgtaaggtgctcctggaagagagggaaaatctcttaagtatctaaataataaaacaatcttaagtgaagatcacctagcactgttcttgagctgttgtaggtgcgggggatatcgctatcgagctcattttgtctaaatcaaaattcataaaatccgagaggtccggcagtaaaagcagttctctccttatggtcttcggtaatctctatctgatgatatcccgacttcatatccaggacactgaagtacgtatttcctgatagagagtctagaatttcctcaatccttggaagagcatagttgtctttaatggttcttgcgttcaactgtcgataatcaatgcaaa
gi|10 : gaaattagcttgtcctttagaaagttaaatgcagcttcctgctccaggtcgcatctccatttggggtaccgactgccatgacgtcaatcagtggcttggctaccttagcgaaatctttgatgaacttgaattactattgcatgattcctgtcatacccgcaacgcagaagtgatctatcttactggattagatggtccgaattcttgacctttggaacttctgtcatgggtctggctcactccatcggttgcgacacaatatgtccacatactacttctcatgaaaggaaacacttattaggagagcttcagcagtcgtttcttagccgtttggacattgctgtatctgtaaggtgctcctggaagagagggaaaatctcttaagtatctaaataataaaacaatcttaagtgaagatcacctagcactgttcttgagctgttgtaggtgcgggggatatcgctatcgagctcattttgtctaaatcaTCT-AG-TCT-T--TCTAAATGCTG-CTCAAAACT--TG-ATG-------AGTACACCA-AAATATCGTC-TAAGTAGATAA-GTAG-AAACT-CAAA-GTTCTT--GTCTCCCAA--ACA-TG--CT-TCCATCAA-TC-GTTGAAAGGTTCCTGG-ACTATTGCACAAAtatctgatgatatcccgacttcatatccaggacactgaagtacgtatttcctgatagagagtctagaatttcctcaatccttggaagagcatagttgtctttaatggttcttgcgttcaactgtcgataatcaatgcaaa
gi|11 : attttcaaaccatgttgagtaagtctagtgaatacaaaaGTC----TGGGTCT-GG-CTCAACTCCATCTTTGGA--CAC---AAT-ATGT---CCTACA------TACTTGACTT-TCCTCATGAAA--AAGGA----ACACTTCT--TAGGAG-AAAGCTTCAG------C-------CCA-------TAG-TT-TCTAATCCGTT-G-AAACACTTGCTGT-AG-TCT-G--TCAAGGTGCTCTCTGAAA
gi|12 : TGG--ATGTAG-ACGCTTTCAA------T-------CCT-------GAA-TT-ATGTATTCTCT-GTAGA-ACGCCTTCC-AA-TGA-T--TCGAAATGTTC-CTTAAAAGT--CC-TTG-------AGAATACTA-TAATGTCGTT-CAAGTAGATAATGCga
gi|13 : attggtctgcaCCAA-CTGTA---AA-G-G-CT-GT-T-CTCTCTTTATGTTGTTC
gi|14 : aTATAA-TTAAGTCATC-TAAATAAATAAAACAA-ATCTT-CAA--GTGAAG--ATCACCTAG--ACACTG-T---TCCTGGAG-GC-GTTGATAGGTTGCGGG-GGCATT-CGCTAAT-Catagatttccacctgatggtatcccgacttcatatcaataacagagaagtacttgtttcctgctaaacagtctaacatttcc
gi|15 : CCCAACTCCAATTGCCTGATGATTGTTGTTTCCCATT
gi|16 : atcaagagcctcttatagttctcga----TGGACTGGGTGTTAAATCCGT-AAGTGGTCTGGCA-A-GTTTTGAAAAA----TTTCT-AATGAAT--TTCCGGTAGTAgtaccatgaag
gi|2 : TTCCTCTAGGCTTCTTACC----AGTGGCCATGA--TGAG-----GATC----AA-TGGCCTCGCT-A-TCTGTGAGGAA----TTCAA-AATAAAT--ATCCGGTAGTAACCTGCGAAACCAA-AAAACTGTCTAACTTCCT-CTGGAGTTT--TTGGAACGGA-CC-AGTTC-TT--AAC-CTT----ACTTGCCTTGTCAGGGTAGGGTCTGC-CTGGACTCCTTC---GGG--TGA---AACAATGTGG-CCAACA------TAGNNNNNNN-NNNNNNNNNNN--NNNNNNNTTAC-CTTGGTCAT-AAG-AAAGAAACAC------T-------TTTTGGAAGAGAA-TT-TTAACCTCTGTCG-AAA-ATAAGTTCTAAA-CGC-T----GAAATGTTC-TTCAAATGTAATT-G-G-------AGCAAACGA-TTACATCGTC-CACATAAATGAAACAA-ATTTT-CAAT-GTAGATCGGCCT----A--ACA-T--TCT-TGCTTGAAGTC-TCTGATATGTCGCGGG-AG-GTT-TACAAGT-CCAAAAGGCATGTTTTT-TGAATTC--GAAGAATCCAAGGGGTCCAATCTGTGACCAA-A-GCC--GT-T-CTCTGTTTA
gi|3 : tgaagtaaatctgtcctttaacaggtcaaaagttctgtcttgggctggtccccatgTTTCTTCTGTTTCTTTCCT-TAGACTTTTTGCCCAAGAGTG----TGAA---GGCATTAAGTCAGTCAA-TGGTCCGTCTCACTCTAT---AAAGCTGTCTCT-AG--AAT--CGTCTATAGAAGCCGACAAAACC-A-GAAAATCTCGAACAGCCT-CTGGTGTTT----GGT-TTGG-CC-AGTGA-TT--GACTCTT----CTCAGTCTTGTC----TG--ATC-AATCTCTACACCCTT---CTC--TGA---ACA-ATGTGTACCAGAA-------ACTTGACCT-TCCTTTTGAAA--AATCG-----CACTTGG--ATGGAG-CAAGTTTAAG------TTGGCCTCCTT-------GGA-TT-TTGT------T-G-AGCCACAAGCTGT-AG-TGT-TAACTGGAATGTCC-CTCAAACGT--CTTGCA-------AAAAT-C-A-TCACAC--TCTCATGAATTTAACACAGCATACTTCAAA-TTCAGC--ATC----AGCTATA-TGGTTC-TCCATCAA-TCAGCTGATATGTCGCTGGTAGAATT-TGTGAGT-CCAAAAGGCAT--CGTTACAA-------TAAAATCCTAATGGTCCAA-CTGAA---AA-ATG-C--AG-TACGCTCCTTATGA-ACTTC-GAACGATCTCGactttctttcagaatttcaatttgatgatatccggctttcatggatccaaaatggtgaaatactggtttccatagaggaatccaagatatcctcaatttgggggaggcgtag
gi|4 : tcAAA----TTCCTGAATAAATC-TTCCTAAAGTATCCTGCAAATCCGATGAA--TTCCTAACTTCTT-CTGTATTGT--TTGGTATTGG-CC-AAG-C-TTACAAC-TTT----GGAAATCTTTTC-----AGCGTC-GGTTTCTACAACTTC---TGA--CAAAACAAC-ATGT---CCTACATGTACGTATTCAACCCATTTTCTTAAAG--AATTT----ACACTT-----TTTAGTAAAGTTTCAAATTTGCT-------TCT-----------TTGATGCGCACTC--G-AAA-ACTGGTTGT-AG-TGT-C--TCTCGATGCTT-TTGAAATGT------TGAGAAAAAAGAAAACAA-TTACGTCATC-AATAAAAATGCAGCAA-GTTTT-CAAATGTAGAT--CTC-CCAAA--ACA----TCCATGCATTAA-GC-GCTGGTATGTAGCTGG-TGC--C-CGCAAAA-ACCAATGACATA-CGGT-TAAATTC--ATATAAGCTTAGCGGACCAA-CTGTA---AATA-C-T--GG-T-CTCGCTTTATGGTT-TCG-cactttggatatccggatgtcattcatgagtaaaagaacttatgttcccgccatacattccaaagaatcctcaatcgtggaagagcgta
gi|5 : gctaCCCATTTGCAGTTGACAGACGATTGTTGTTTCCCTTTTTTCTTTTTT-TA-----TTTG---AAGATTG----TGGACTAGGCGTAAGATCCGT-AAGTGGTCTGGCA-AGTTTG-GAGAAA----TTTCT-GATAAAT--TTCCGGTAGTAACCAATAAATCCTA-GAAATTTCCCGACCTCTT-CAGGTGTTC--TTGGTGTTGG-CC-AGGAC-CT--GAC-TTT----ATCCACCTTGTC----TGGAATT-GG-CTCTATTCCATT---GGC--CGA---GAT-ATGT---CCAACA------TATTTAACCT-TAGTCTGGAAA--AATTG----GCACTTGG--ATGGAG-ACAGTTTCAA------T-------CCT-------GAA-TT-ATGTATTCTCT-GCAGA-ACTCTTTCC-AA-TCT-T--TCGAGATGTTC-ATCAAATGT--CC-GTG-------ATAATACTA-TGATATCGTC-CAAGTAGATAATGCAT-ATGCT--AAG-GTTAAT--ATCT-GAAA--ATA-TG-TCC-TCCATCAG-TC-GTTGGTACGTGGCAGG-GGCATT-GGCTAAT-CCAAAAGACATG-CGCT-CAAACTC--GAAAAATCCAAGTGGTCCGA-CAGTG---AA-G-G-C--GG-TGCGCCCTTTGTGGTTCTCC-G--CTATCTCGtagaattccaccttgatgtaaccgactcatatcggataaacggagatgtacttattccagctaaacagtctaacatttcccccatcccttggtcattaggcgtctctcttcgtccttttgttaattggcgatattcgatgcaaa
gi|6 : CCCATCTCCAGTTGACCGACGATAATTGTTTCCCTTTCTTCTT
gi|7 : aatctttgaaattttcagtgatgtaccatttcaaagctaaacactctagcttacgggcaggataattttcttcagctggtgtaagtcctctgcttgcgtatccaatgactcgcttcatcccatcctggtcttggtaaagaatggttccaattcctcaggtactagcatcagtatgcagttgaaatcgtcatgtctgggtattcatgatcaagtataggtggcgatatcaagtgctgccgaaggacattgaaagcttcttgttgttctcaac---AAT-ATGA---CCAAGA------TACCCAACCT-TTTATTCAAAG--GAATG----ACACTTGG--A---AG-ATA--TT--A------T-------CTT-------GAAACC-ATGATTTCTC------A-ATCTGTTGA-AAATGAAC--TCTAAATGATG-TGCAAATGA--CT-ATG-------AAAATATGAAGAATATCGTC-GAAGTAGAGAAGACAT-AT-CT-AAAA-ATATTT--ATCACCTAA--ACA-A-------CCATTAA-TC-TTTGAAAGGTACTTGG-ATTGTT--GCAAAGACTAAAGGACATG-CGTA-CAAATTCATGTAAA--CCAATTGGTcgaag
gi|8 : cttttcttgatcgaccttccttcccatcttaaccatTTCTTTCCTCTAGGCTTCTTACC----AGTG------GCCATGATGTCGA-TC----AA-TGGTCTCGCT-A-TCTGTGAGAAA----TTCAA-AATAAAT--TTC--GCGGTACCCTGCGAAACAAA-G-AACTGTCTAACTTC-T-CTGGAGTTTTGTTGG-ACGGGCCC-AGTTCTTT--AAC-CTT----ACTTACCTTGTC----AGGGTTT-GC-ATGGACTCCTTC---AGC--TGA---AACAATGT---
gi|9 : tctgtcttgagctggtccccatgtccaggaagtgtgggggtatctAATTC--ATATAAGC-TAGCGGACCAA-CTGTA---AA-T-A-CTTGG-T-CTCGCTTTA-GGTT-TCGAGAAggcca
Alignments
lowQualScore : 1 3333333 3333333333333333333333333 44444444444 1111111111 11 1111111 1111 1111 11111111 11111 11 111111 222222222222 11111111 44444444444444444444444444444444444444444444444444444 11111 222222 1111111 11 11 11111111 222222222 111 11 111111 111 1111111111111 11 4444
lowQualScore : 3 1 5 22 2 3333333 2222222222222222222222222 6 55555555555 1 6 7777777777 0 5 33 3 1 7 6 7 6 55 1 1 4 6 4444444 6666 6 6 6 6 6666 6 6 7777 0 6666 5 999 5 1 55555555 888 88888 11 5 666666 77 1 5 55 777777777777 88888888 5 1 777 44444444444444444444444444444444444444444444444444444 22 1 4 888 33333 1 4 0 5 222222 2 6666666 1 5 1 1 2 55 0 3 5 22 6 33 66 6666 99 22 1 88888888 4 1 5 5 2 1 6 1 000000000 3 6 1 1 111 6 11 6 666666 888 0 1 1 4 1 5 000 7777777777777 33 8 0000
lowQualScore : . . . .. . ....... ......................... . ........... . . .......... . . .. . . . . . . .. . . . . ....... .... . . . . .... . . .... . .... . ... . . ........ ... ..... .. . ...... .. . . .. ............ ........ . . ... ..................................................... .. . . ... ..... . . . . ...... . ....... . . . . . .. . . . .. . .. .. .... .. .. . ........ . . . . . . . . ......... . . . . ... . .. . ...... ... . . . . . . ... ............. .. . ....
lowQualScore : 7 2 0 88 5 8888888 5555555555555555555555555 7 00000000000 0 7 4444444444 4 7 66 0 0 5 3 5 7 33 0 8 2 7 8888888 5555 7 7 7 7 0000 7 7 9999 7 7777 7 444 7 0 44444444 888 55555 99 4 444444 66 0 7 00 111111111111 55555555 0 0 888 88888888888888888888888888888888888888888888888888888 00 0 4 888 88888 9 4 1 5 222222 6 2222222 0 0 0 1 5 22 5 4 9 33 6 66 77 0000 99 77 7 33333333 3 7 7 7 3 0 6 6 666666666 9 7 0 8 777 7 88 7 444444 333 6 3 0 0 4 7 000 7777777777777 00 0 1111
consensus : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-TGTGGAC----TG----GGCGTCAAATC-GT-AGTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AGA-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAATGT--CCGTGAGAANA-------CNA-TNACGTCGTC-CAAGTAGATAANGCAN-ATNCT-CAAAGTNNANATCNCCCAAACA-TG-TCC-TCCATCAA-TC-GCTGATANGTNGCTGG-AGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGTT-CAAAT------TC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
Reference ( family-4779 ) : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGAGTGTGGAC----TG----GGCGTTAAATCCGTAAGTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTACTNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNNT---TCTC-T-G-AGA-ACNNGTTNT-A-G-TGT-T--TCGAAATGCTC-CTCAAATGT--CCGTGAGAATA-------CNA-TNACGTCGTC-CAAGTAGATAANGCAN-ATNCT-CAAAGTNNATATCTCCNAAACA-TG-TCC-TCCATCAA-TC-GCTGATANGTNGCTGG-AGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGTT-CAAAT------TC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
gi|1 : GAC----TGCCATGACGTCAA-TC----AGTGGCTTGGCT-ACCTTAGCGAAATCTTTGATGAACTTGAA----TTACT-ATTGCATGATTCCTGTCATACCC-GC--AACGCA-GAAGTGATCTA---TCTTACTGGA------TTAG-ATGGT-CCGA-ATTC-TTGACCTTTGGAA-CTTCTGTCA---TGGGTCT-GG-CT-C-AC-TCCATC---GGTTGCGACACAAT-A---TGT--CC-ACAT------ACT--AC---TTCTCATGAAAGGAA-------ACACTT----ATTAGG-AGAGCTTCAGCAG------T-------CGT-----------TTC-TTAGC---CGTT-T-G--GA-CATTGCTGT-ATC-TGT------AAGGTGCTC-CTGGAA-GA--GAGGGAAAAT--------CTC-TTAAGT-ATC-TAAATA-ATAAAACA--ATCTT---AAGTGAAGATCACCT-AGCACTG-TTC-T---TGAG-CT-GTTG-TAGGT-GCGGG-GGATAT-CGC-TAT-C-----GAGCTCATTT-TGTC-TAAATCAAAATTC--ATAAAATCCGAGAGGTCCGG-CAGTA---AA-A-G-C--AGTT-CTCTCCTTATGGTCTTCG-GTA--ATCTC
gi|10 : gaaattagcttgtcctttagaaagttaaatgcagcttcctgctccaggtcgcatctccatttggggtaccTTT---CAA------A-------CC----------A-TGT-TGAGTAAGTCTAGT-G-AAT-ACAAAATCT-A-G-TCT-T--TCTAAATGCTG-CTCAAAACT--TGATGAGTACA-------CCA-AAATATCGTC-TAAGTAGATAA-GTAG-AAACT-CAAAGTTCTTGTCTCCCAAACA-TG--CT-TCCATCAA-TC-GTTGAAAGGTTCCTGG-ACTATTGCACAAAtatctgatgatatcccgacttcatatccaggacactgaagtacgtatttcctgatagagagtctagaatttcctcaatccttggaagagcatagttgtctttaatggttcttgcgttcaactgtcgataatcaatgcaaa
gi|11 : atGTC----TGGGTCT-GG-CT-CAAC-TCCATCTTTGG--ACAC---AAT-A---TGT--CCTACAT------ACTTGACTT-TCCTCATGAAA--AAGGA----ACACTTCT--TAGGAG-AAAGCTT---CAG------C-------CCA-------TAG-TTT-CTAAT---CCGT-T-G-AAACACTTGCTGT-A-G-TCT-G--TCAAGGTGCTCTCTGAAA
gi|12 : TGG--ATGTAG-ACGCTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GTAGA-ACGCCTTCC-A-A-TGA-T--TCGAAATGTTC-CTTAAAAGT--CCTTGAGAATA-------CTA-TAATGTCGTT-CAAGTAGATAATGCga
gi|13 : attggtctgcaCCAA-CTGTA---AA-G-G-C--TG-TTCTCTCTTTATGTTGTTC
gi|15 : aCCCAACTCCAATTGCCTGATGATTGTTGTTTCCCATTatagatttccacctgatggtatcccgacttcatatcaataacagagaagtacttgtttcctgctaaacagtctaacatttcc
gi|16 : atcaagagcctcttatagttctcgaTGGAC----TG----GGTGTTAAATCCGTAAGTGGTCTGGCA-A-----------GTTTTGA-AAA-----A----TTTCT-AATGAAT--TTCCGGTAGTAgtaccatgaag
gi|2 : TTCCTCTAGGCTTCTTACC-A-----GTGGCCATGATG----AG-----GATC----AATGGCCTCGCT-A-----------TCTGTGA-GGA-----A----TTCAA-AATAAAT--ATCCGGTAGTAACCTGCGAAACCAA-AAAACTGTCTAACTTCCT-CTGGAGTTT--TTGGAACGGA-CC-A-GTTC-TTAACCTTACTTG-CCT-TGTCAGGGTAGGGTCTGC-CT-GGAC-TCCTTC---GG--GTGA---AACAA---TGTGGCCAACAT------AGNNNNNNN-NNNNNNNNNNN--NNNNNNNTTAC-CTTGGTCAT-AAG-AAAGAAA---CAC------T-------TTTTGGAAGAGAA-TTT-TAACC---TCTG-TCG-AAA-ATAAGTTCTAA-A-CGC-T----GAAATGTTC-TTCAAATGTAATTG-GAGCAAA-------CGA-TTACATCGTC-CACATAAATGAAACAA-ATTTT-CAA--TGTAGATCGGCCTAACA-T--TCT-TGCTTGAAGTC-TCTGATATGTCGCGGG-AG-GTT-TACAAGT-CCAAAAGG---CA-TGTTTTT-TGAAT------TC--GAAGAATCCAAGGGGTCCAATCTGTGACCAA-A-GCC--GT-T-CTCTGTTTA
gi|3 : tgaagtaaatctgtcctttaacaggtcaaaagttctgtcttgggctggtccccatgTTTCTTCTGTTTCTTTCCT-TAGACTTTTTGCCCAAGAGTGTGAA-----------GGCATTAAGTCAGTCAATGGTCCGTCTCAC----------TCTAT----AA-----AGCTGTCTCT-AG--AAT--CGTCTATAGAAGCCGACAAAACC-A-GAAAATCTCGAACAGCCT-CTGG--TGT--TTGGT-TTGG-CC-A-GTGA-TTGACTCTTCTCAGTCT-TGTC----TG--ATC-AATCT-CTACACCCTTC-------TCTG---AAC-AATGTGTA-CCAGAA-------ACTTGACCT-TCCTTTTGAAA--AATCG-----CACTTGG--ATGGAG-CAAGTTT---AAG------TTGGCCTCCTT-------GGA-TTT-TGT----------T-G-AGCCACAAGCTGT-A-G-TGT-TAACTGGAATGTCC-CTCAAACGT--CT-TGCAAAAA-------TCA-TCACAC--TCTCATGAATTTAACACAGCATACTTCAAATTCAGCATCAGCTA--TA-TGGTTC-TCCATCAA-TCAGCTGATATGTCGCTGGTAGAATT-TGTGAGT-CCAAAAGG---CA-T--CGTTACAA-------------TAAAATCCTAATGGTCCAA-CTGAA---AA-ATG-C--AG-TACGCTCCTTATGA-ACTTC-GAACGATCTCGactttctttcagaatttcaatttgatgatatccggctttcatggatccaaaatggtgaaatactggtttccatagaggaatccaagatatcctcaatttgggggaggcgtag
gi|4 : tcAA-----A----TTCCTGAATAAATC-TTCCTAAAGTATCCTGCAAATCCGATGAA--TTCCTAACTTCTT-CTGTATTGT--TTGGTATTGG-CC-AAGCTT-ACAACTTTGGAAA-TCT-TTTC----AGCG-TC-GG-TTTCTAC-AACTTC---TG--ACAA---AAC-AACATGT--CCTACATGTACGTATTCAACCCATTTTCTTAAAG--AATTT----ACACTT-----TTTAGTAAAGTTT---CAAATTTGCT-------TCT-----------TTGATGCGC---ACTC---G-AAA-ACTGGTTGT-A-G-TGT-C--TCTCGATGCTT-TTGAAATGT-----TGAGAAAAAAGAAAACAA-TTACGTCATC-AATAAAAATGCAGCAA-GTTTT-CAAA-TGTAGATCTCCCAAA-A-CA-TCCATGCATTAA-GC-GCTGGTATGTAGCTGG-TGC--C-CGCAAAA-ACCAATGA---CA-TA-CGGT-TAAAT------TC--ATATAAGCTTAGCGGACCAA-CTGTA---AATA-C-T--GG-T-CTCGCTTTATGGTT-TCG-cactttggatatccggatgtcattcatgagtaaaagaacttatgttcccgccatacattccaaagaatcctcaatcgtggaagagcgta
gi|5 : gctaCCCATTTGCAGTTGACAGACGATTGTTGTTTCCCTTTTTTCTTTTTT-TA-----TTTG---AAGATTGTGGAC----TA----GGCGTAAGATCCGTAAGTGGTCTGGCA-AG----------TTTG-GA-GAA-----A----TTTCT-GATAAAT--TTCCGGTAGTAACCAATAAATCCTA-GAAATTTCCCGACCTCTT-CAGGTGTTC--TTGGTGTTGG-CC-A-GGAC-CTGACTTTATCCA-CCT-TGTC----TGGAATT-GG-CT-CTAT-TCCATT---GG--CCGA---GAT-A---TGT--CCAACAT------ATTTAACCT-TAGTCTGGAAA--AATTG----GCACTTGG--ATGGAG-ACAGTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GCAGA-ACTCTTTCC-A-A-TCT-T--TCGAGATGTTC-ATCAAATGT--CCGTGATAATA-------CTA-TGATATCGTC-CAAGTAGATAATGCAT-ATGCT--AAGGTTAATATCT-GAAAATA-TG-TCC-TCCATCAG-TC-GTTGGTACGTGGCAGG-GGCATT-GGCTAAT-CCAAAAGA---CA-TG-CGCT-CAAAC------TC--GAAAAATCCAAGTGGTCCGA-CAGTG---AA-G-G-C--GG-TGCGCCCTTTGTGGTTCTCC-G--CTATCTCGtagaattccaccttgatgtaaccgactcatatcggataaacggagatgtacttattccagctaaacagtctaacatttcccccatcccttggtcattaggcgtctctcttcgtccttttgttaattggcgatattcgatgcaaa
gi|6 : CCCATCTCCAGTTGACCGACGATAATTGTTTCCCTTTCTTCTT
gi|7 : aatctttgaaattttcagtgatgtaccatttcaaagctaaacactctagcttacgggcaggataattttcttcagctggtgtaagtcctctgcttgcgtatccaatgactcgcttcatcccatcctggtcttggtaaagaatggttccaattcctcaggtactagcatcagtatgcagttgaaatcgtcatgtctgggtattcatgatcaagtataggtggcgatatcaagtgctgccgaaggacattgaaagcttcttgttgttctcaac---AAT-A---TGA--CCAAGAT------ACCCAACCT-TT-TATTCAAAGGAAT-G----ACACTTGG--A---AG-ATA--TT-----A------T-------CTT-------GAAACCA-TGATT---TCTC-------A-ATCTGTTGA-A-AATGAAC--TCTAAATGATG-TGCAAATGA--CTATGAAAATA-------TGAAGAATATCGTC-GAAGTAGAGAAGACAT-AT-CT-AAAAATATTTATCACCTAAACA-A-------CCATTAA-TC-TTTGAAAGGTACTTGG-ATTGTT--GCAAAGACTAAAGGA---CA-TG-CGTA-CAAAT------TCATGTAAA--CCAATTGGTcgaag
gi|8 : cttttcttgatcgaccttccttcccatcttaaccatTCTTTCTTTCCTCTAGGCTTCTTACC-A-----GTGGCC----AT----GATGTCGA-TC----AATGGTCTCGCT-A-----------TCTGTGA-GAA-----A----TTCAA-AATAAAT--TTC--GCGGTACCCTGCGAAACAAA-G-AACTGTCTAACTTC-T-CTGGAGTTTTGTTGG-ACGGGCCC-A-GTTCTTTAACCTTACTTA-CCT-TGTC----AGGGTTT-GC-AT-GGAC-TCCTTC---AG--CTGA---AACAA---TGT--
gi|9 : tctgtcttgagctggtccccatgtccaggaagtgtgggggtaAAT------TC--ATATAAGC-TAGCGGACCAA-CTGTA---AA-T-A-CTTGG-T-CTCGCTTTA-GGTT-TCGAGAAggcca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATAATTAAGTCATCTAAATAAATAAAACAAATCTTCAAGTGAAGATCACCTAGACACTGTTCCTGGAGGCGTTGATAGGTTGCGGGGGCATTCGCTAATC
Alignments
lowQualScore : 1 44444444 2222222222 555555555 44444444444 1111111111 11 1111111 1111 1111 11111111 11111 11 111111 222222222222 11111111 444444444444444444444444444444444444444444444444444444 11111 2222222 2222222 11 11111111 222222222 111 11 222222222 111 1111111111111 11 4444
lowQualScore : 3 1 5 22 2 55555555 8888888888 666666666 6 55555555555 1 6 7777777777 0 5 33 3 1 7 6 7 6 55 1 1 4 6 4444444 6666 6 6 6 6 4444 6 6 7777 0 6666 5 999 5 1 55555555 888 88888 11 5 666666 77 1 5 55 777777777777 88888888 5 1 777 555555555555555555555555555555555555555555555555555555 22 1 4 888 33333 1 4 0 2 2222222 1 1111111 1 5 1 1 0 0 3 5 22 999 7 66 3333 55 99 1 88888888 4 1 5 5 2 1 6 1 000000000 3 6 1 1 111 6 11 000000000 888 0 1 1 4 1 5 000 7777777777777 33 8 0000
lowQualScore : . . . .. . ........ .......... ......... . ........... . . .......... . . .. . . . . . . .. . . . . ....... .... . . . . .... . . .... . .... . ... . . ........ ... ..... .. . ...... .. . . .. ............ ........ . . ... ...................................................... .. . . ... ..... . . . . ....... . ....... . . . . . . . . .. ... . .. .... .. .. . ........ . . . . . . . . ......... . . . . ... . .. ......... ... . . . . . . ... ............. .. . ....
lowQualScore : 7 2 0 88 5 00000000 7777777777 000000000 7 00000000000 0 7 4444444444 4 7 66 0 0 5 3 5 7 33 0 8 2 7 8888888 5555 7 7 7 7 0000 7 7 9999 7 7777 7 444 7 0 44444444 888 55555 99 4 444444 66 0 7 00 111111111111 55555555 0 0 888 999999999999999999999999999999999999999999999999999999 00 1 4 888 88888 9 4 1 4 9999999 0 2222222 0 0 0 1 2 5 4 9 33 111 9 77 6666 33 11 7 33333333 3 7 7 7 3 0 6 6 666666666 9 7 0 8 777 7 88 777777777 333 6 3 0 0 4 7 000 7777777777777 00 0 1111
consensus : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGAC----TG----GGCGTCAAATC-GT-A-GTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAANGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTNNANATCNCCCAAACA-T-GTCC-TCCATCAA-TC-GCTGATANGTNGCTGG-AGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
Reference ( family-4779 ) : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGAC----TG----GGCGTCAAATC-GT-A-GTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAATGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTNNANATCNCCCAAACA-T-GTCC-TCCATCAA-TC-GCTGATANGTNGCTGG-AGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
gi|1 : GAC----TGCCATGACGTCAA-TC----A-GTGGCTTGGCT-ACCTTAGCGAAATCTTTGATGAACTTGAA----TTACT-ATTGCATGATTCCTGTCATACCC-GC--AACGCA-GAAGTGATCTA---TCTTACTGGA------TTAG-ATGGT-CCGA-ATTC-TTGACCTTTGGAA-CTTCTGTCA---TGGGTCT-GG-CT-C-AC-TCCATC---GGTTGCGACACAAT-A---TGT--CC-ACAT------ACT--AC---TTCTCATGAAAGGAA-------ACACTT----ATTAGG-AGAGCTTCAGCAG------T-------CGT-----------TTC-TTAGC---CGTT-T-G--G-A-CATTGCTGT-ATC-TGT------AAGGTGCTC-CTGGAAGA-----GAGGGAAAAT------CTC-TTAAGT-ATCTAAATA-ATAAAACA--ATCT-T--AAGTGAAGATCACCT-AGCACT-GTTC-T---TGAG-CT-GTTG-TAGGT-GCGGG-GGATAT-CGC-TAT-C-----GAGCTCATTT-TGTCTAAAT-CAAAATTC--ATAAAATCCGAGAGGTCCGG-CAGTA---AA-A-G-C--AGTT-CTCTCCTTATGGTCTTCG-GTA--ATCTC
gi|10 : gaaattagcttgtcctttagaaagttaaatgcagcttcctgctccaggtcgcatctccatttggggtaccTTT---CAA------A-------CC----------A-TGT-TGAGTAAGTCTAGT-G-AA-T-ACAAAATCT-A-G-TCT-T--TCTAAATGCTG-CTCAAAACT--TGATGAGTACA-------CCA-AAATATCGTCTAAGTAGATAA-GTA-GAAAC-TCAAAGTTCTTGTCTCCCAAACA-T-G-CT-TCCATCAA-TC-GTTGAAAGGTTCCTGG-ACTATTGCACAAAtatctgatgatatcccgacttcatatccaggacactgaagtacgtatttcctgatagagagtctagaatttcctcaatccttggaagagcatagttgtctttaatggttcttgcgttcaactgtcgataatcaatgcaaa
gi|11 : atGTC----TGGGTCT-GG-CT-CAAC-TCCATCTTTGG--ACAC---AAT-A---TGT--CCTACAT------ACTTGACTT-TCCTCATGAAA--AAGGA----ACACTTCT--TAGGAG-AAAGCTT---CAG------C-------CCA-------TAG-TTT-CTAAT---CCGT-T-G-AA-ACACTTGCTGT-A-G-TCT-G--TCAAGGTGCTCTCTGAAA
gi|12 : TGG--ATGTAG-ACGCTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GTAG-A-ACGCCTTCC-A-A-TGA-T--TCGAAATGTTC-CTTAAAAGT--CCTTGAGAATA-------CTA-TAATGTCGTTCAAGTAGATAATGCga
gi|13 : attggtctgcaCCAA-CTGTA---AA-G-G-C--TG-TTCTCTCTTTATGTTGTTC
gi|15 : aCCCAACTCCAATTGCCTGATGATTGTTGTTTCCCATTatagatttccacctgatggtatcccgacttcatatcaataacagagaagtacttgtttcctgctaaacagtctaacatttcc
gi|16 : atcaagagcctcttatagttctcgaTGGAC----TG----GGTGTTAAATCCGT-AAGTGGTCTGGCA-A-----------GTTTTGA-AAA-----A----TTTCT-AATGAAT--TTCCGGTAGTAgtaccatgaag
gi|2 : TTCCTCTAGGCTTCTTACC-A------GTGGCCATGATG----AGGATCAA----------TGGCCTCGCT-A-----------TCTGTGA-GGA-----A----TTCAA-AATAAAT--ATCCGGTAGTAACCTGCGAAACCAA-AAAACTGTCTAACTTCCT-CTGGAGTTT--TTGGAACGGA-CC-A-GTTC-TTAACCTTACTTG-CCT-TGTCAGGGTAGGGTCTGC-CT-GGAC-TCCTTC---GG--GTGA---AACAA---TGTGGCCAACAT------AGNNNNNNN-NNNNNNNNNNN--NNNNNNNTTAC-CTTGGTCAT-AAG-AAAGAAA---CAC------T-------TTTTGGAAGAGAA-TTT-TAACC---TCTG-TCG-AA-A-ATAAGTTCTAA-A-CGC-T----GAAATGTTC-TTCAAATGTAATTG-GAGCAAA-------CGA-TTACATCGTCCACATAAATGAAACA-AATTT-TCAA--TGTAGATCGGCCTAACA-T--TCT-TGCTTGAAGTC-TCTGATATGTCGCGGG-AG-GTT-TACAAGT-CCAAAAGG---CA-TGTTTT-----T-T-GAATTC--GAAGAATCCAAGGGGTCCAATCTGTGACCAA-A-GCC--GT-T-CTCTGTTTA
gi|3 : tgaagtaaatctgtcctttaacaggtcaaaagttctgtcttgggctggtccccatgTTTCTTCTGTTTCTTTCCT-TAGACTTTTTGCCCAAGAGT-GTGAA-----------GGCATTAAGTCAGTCA-ATGGTCCGTCTCAC----------TCTAT----AA-----AGCTGTCTCT-AG--AAT--CGTCTATAGAAGCCGACAAAACC-A-GAAAATCTCGAACAGCCT-CTGG--TGT--TTGGT-TTGG-CC-A-GTGA-TTGACTCTTCTCAGTCT-TGTC----TG--ATC-AATCT-CTACACCCTTC-------TCTG---AAC-AATGTGTA-CCAGAA-------ACTTGACCT-TCCTTTTGAAA--AATCG-----CACTTGG--ATGGAG-CAAGTTT---AAG------TTGGCCTCCTT-------GGA-TTT-TGT----------T-G-AGCC-ACAAGCTGT-A-G-TGT-TAACTGGAATGTCC-CTCAAACGT--CT-TGCAAAAA-------TCA-TCACA-CTCTCATGAATTTAACACAGCATACTTCAAATTCAGCATCAGCT--ATA-TGGTTC-TCCATCAA-TCAGCTGATATGTCGCTGGTAGAATT-TGTGAGT-CCAAAAGG---CA-T--CGT-----TAC-AA-------TAAAATCCTAATGGTCCAA-CTGAA---AA-ATG-C--AG-TACGCTCCTTATGA-ACTTC-GAACGATCTCGactttctttcagaatttcaatttgatgatatccggctttcatggatccaaaatggtgaaatactggtttccatagaggaatccaagatatcctcaatttgggggaggcgtag
gi|4 : tcAA-----A----TTCCTGAATAAATC-TTCCTAAAGTATCCTGCAAATCCGATGAA--TTCCTAACTTCTT-CTGTATTGT--TTGGTATTGG-CC-AAGCTT-ACAACTTTGGAAA-TCT-TTTC----AGCG-TC-GG-TTTCTAC-AACTTC---TG--ACAA---AAC-AACATGT--CCTACATGTACGTATTCAACCCATTTTCTTAAAG--AATTT----ACACTT-----TTTAGTAAAGTTT---CAAATTTGCT-------TCT-----------TTGATGCGC---ACTC---G-AA-A-ACTGGTTGT-A-G-TGT-C--TCTCGATGCTT-TTGAAATGT-----TGAGAAAAAAGAAAACAA-TTACGTCATCAATAAAAATGCAGCA-AGTTT-TCAAA-TGTAGATCTCCCAAA-A-C-ATCCATGCATTAA-GC-GCTGGTATGTAGCTGG-TGC--C-CGCAAAA-ACCAATGA---CA-TA-CGG-----T-T-AAATTC--ATATAAGCTTAGCGGACCAA-CTGTA---AATA-C-T--GG-T-CTCGCTTTATGGTT-TCG-cactttggatatccggatgtcattcatgagtaaaagaacttatgttcccgccatacattccaaagaatcctcaatcgtggaagagcgta
gi|5 : gctaCCCATTTGCAGTTGACAGACGATTGTTGTTTCCCTTTTTTCTTTTTT-TA-----TTTG---AAGA-TTGTGGAC----TA----GGCGTAAGATCCGT-AAGTGGTCTGGCA-AG----------TTTG-GA-GAA-----A----TTTCT-GATAAAT--TTCCGGTAGTAACCAATAAATCCTA-GAAATTTCCCGACCTCTT-CAGGTGTTC--TTGGTGTTGG-CC-A-GGAC-CTGACTTTATCCA-CCT-TGTC----TGGAATT-GG-CT-CTAT-TCCATT---GG--CCGA---GAT-A---TGT--CCAACAT------ATTTAACCT-TAGTCTGGAAA--AATTG----GCACTTGG--ATGGAG-ACAGTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GCAG-A-ACTCTTTCC-A-A-TCT-T--TCGAGATGTTC-ATCAAATGT--CCGTGATAATA-------CTA-TGATATCGTCCAAGTAGATAATGCA-TATGC-T-AAGGTTAATATCT-GAAAATA-T-GTCC-TCCATCAG-TC-GTTGGTACGTGGCAGG-GGCATT-GGCTAAT-CCAAAAGA---CA-TG-CGC-----T-C-AAACTC--GAAAAATCCAAGTGGTCCGA-CAGTG---AA-G-G-C--GG-TGCGCCCTTTGTGGTTCTCC-G--CTATCTCGtagaattccaccttgatgtaaccgactcatatcggataaacggagatgtacttattccagctaaacagtctaacatttcccccatcccttggtcattaggcgtctctcttcgtccttttgttaattggcgatattcgatgcaaa
gi|6 : CCCATCTCCAGTTGACCGACGATAATTGTTTCCCTTTCTTCTT
gi|7 : aatctttgaaattttcagtgatgtaccatttcaaagctaaacactctagcttacgggcaggataattttcttcagctggtgtaagtcctctgcttgcgtatccaatgactcgcttcatcccatcctggtcttggtaaagaatggttccaattcctcaggtactagcatcagtatgcagttgaaatcgtcatgtctgggtattcatgatcaagtataggtggcgatatcaagtgctgccgaaggacattgaaagcttcttgttgttctcaac---AAT-A---TGA--CCAAGAT------ACCCAACCT-TT-TATTCAAAGGAAT-G----ACACTTGG--A---AG-ATA--TT-----A------T-------CTT-------GAAACCA-TGATT---TCTC--------A-ATCTGTTGA-A-AATGAAC--TCTAAATGATG-TGCAAATGA--CTATGAAAATA-------TGAAGAATATCGTCGAAGTAGAGAAGACA-TAT-C-TAAAAATATTTATCACCTAAACA-A-------CCATTAA-TC-TTTGAAAGGTACTTGG-ATTGTT--GCAAAGACTAAAGGA---CA-TG-CGT-----A-C-AAATTCATGTAAA--CCAATTGGTcgaag
gi|8 : cttttcttgatcgaccttccttcccatcttaaccatTCTTTCTTTCCTCTAGGCTTCTTACC-A------GTGGCC----AT----GATGTCGA-TC----A-ATGGTCTCGCT-A-----------TCTGTGA-GAA-----A----TTCAA-AATAAAT--TTC--GCGGTACCCTGCGAAACAAA-G-AACTGTCTAACTTC-T-CTGGAGTTTTGTTGG-ACGGGCCC-A-GTTCTTTAACCTTACTTA-CCT-TGTC----AGGGTTT-GC-AT-GGAC-TCCTTC---AG--CTGA---AACAA---TGT--
gi|9 : tctgtcttgagctggtccccatgtccaggaagtgtgggggtaAATTC--ATATAAGC-TAGCGGACCAA-CTGTA---AA-T-A-CTTGG-T-CTCGCTTTA-GGTT-TCGAGAAggcca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATAATTAAGTCATCTAAATAAATAAAACAAATCTTCAAGTGAAGATCACCTAGACACTGTTCCTGGAGGCGTTGATAGGTTGCGGGGGCATTCGCTAATC
Alignments
lowQualScore : 1 44444444 2222222222 555555555 44444444444 1111111111 11 1111111 1111 1111 11111111 11111 11 111111 222222222222 11111111 444444444444444444444444444444444444444444444444444444 11111 2222222 1111111 11 22222222 11111 111 11 222222222 111 1111111111111 11 4444
lowQualScore : 3 1 5 22 2 55555555 8888888888 666666666 6 55555555555 1 6 7777777777 0 5 33 3 1 7 6 7 6 55 1 1 4 6 4444444 6666 6 6 6 6 4444 6 6 7777 0 6666 5 999 5 1 55555555 888 88888 11 5 666666 77 1 5 55 777777777777 88888888 5 1 777 555555555555555555555555555555555555555555555555555555 22 1 4 888 33333 1 4 0 1 2222222 1 8888888 1 4 1 2 0 3 5 00 888 5 99 2222 33 77 0 44444444 2 0 3 5 5 0 1 5 3 55555 88 5 5 1 1 111 6 11 000000000 888 0 1 1 4 1 5 000 7777777777777 33 8 0000
lowQualScore : . . . .. . ........ .......... ......... . ........... . . .......... . . .. . . . . . . .. . . . . ....... .... . . . . .... . . .... . .... . ... . . ........ ... ..... .. . ...... .. . . .. ............ ........ . . ... ...................................................... .. . . ... ..... . . . . ....... . ....... . . . . . . . .. ... . .. .... .. .. . ........ . . . . . . . . . ..... .. . . . . ... . .. ......... ... . . . . . . ... ............. .. . ....
lowQualScore : 7 2 0 88 5 00000000 7777777777 000000000 7 00000000000 0 7 4444444444 4 7 66 0 0 5 3 5 7 33 0 8 2 7 8888888 5555 7 7 7 7 0000 7 7 9999 7 7777 7 444 7 0 44444444 888 55555 99 4 444444 66 0 7 00 111111111111 55555555 0 0 888 999999999999999999999999999999999999999999999999999999 00 1 4 888 88888 9 4 1 0 9999999 0 9999999 0 4 0 7 9 7 3 99 999 6 66 4444 55 66 2 44444444 5 5 4 0 0 9 0 9 2 00000 44 5 7 0 8 777 7 88 777777777 333 6 3 0 0 4 7 000 7777777777777 00 0 1111
consensus : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGAC----TG----GGCGTCAAATC-GT-A-GTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAANGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTGNANATCNCCCAAACA-T-GTCC-TCCATNAA-TC-GTTGATANGTNGCNGG-GGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
Reference ( family-4779 ) : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGAC----TG----GGCGTCAAATC-GT-A-GTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAANGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTNNANATCNCCCAAACA-T-GTCC-TCCATCAA-TC-GCTGATANGTNGCTGG-AGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
gi|1 : GAC----TGCCATGACGTCAA-TC----A-GTGGCTTGGCT-ACCTTAGCGAAATCTTTGATGAACTTGAA----TTACT-ATTGCATGATTCCTGTCATACCC-GC--AACGCA-GAAGTGATCTA---TCTTACTGGA------TTAG-ATGGT-CCGA-ATTC-TTGACCTTTGGAA-CTTCTGTCA---TGGGTCT-GG-CT-C-AC-TCCATC---GGTTGCGACACAAT-A---TGT--CC-ACAT------ACT--AC---TTCTCATGAAAGGAA-------ACACTT----ATTAGG-AGAGCTTCAGCAG------T-------CGT-----------TTC-TTAGC---CGTT-T-G--G-A-CATTGCTGT-ATC-TGT------AAGGTGCTC-CTGGAAGA-----GAGGGAAAAT------CTC-TTAAGT-ATCTAAATA-ATAAAACA--ATCT-T--AAGTGAAGATCACCT-AGCACT-GTTC-T---TGAG-CT-GTTG-TAGGT-GCGGG-GGATAT-CGC-TAT-C-----GAGCTCATTT-TGTCTAAAT-CAAAATTC--ATAAAATCCGAGAGGTCCGG-CAGTA---AA-A-G-C--AGTT-CTCTCCTTATGGTCTTCG-GTA--ATCTC
gi|10 : gaaattagcttgtcctttagaaagttaaatgcagcttcctgctccaggtcgcatctccatttggggtaccTTT---CAA------A-------CC----------A-TGT-TGAGTAAGTCTAGT-G-AA-T-ACAAAATCT-A-G-TCT-T--TCTAAATGCTG-CTCAAAACT--TGATGAGTACA-------CCA-AAATATCGTCTAAGTAGATAA-GTA-GAAAC-TCAAAGTTCTTGTCTCCCAAACA-T-G-CT-TCCATCAA-TC-GTTGAAAGGTTCCTGG-ACTATTGCACAAAtatctgatgatatcccgacttcatatccaggacactgaagtacgtatttcctgatagagagtctagaatttcctcaatccttggaagagcatagttgtctttaatggttcttgcgttcaactgtcgataatcaatgcaaa
gi|11 : atGTC----TGGGTCT-GG-CT-CAAC-TCCATCTTTGG--ACAC---AAT-A---TGT--CCTACAT------ACTTGACTT-TCCTCATGAAA--AAGGA----ACACTTCT--TAGGAG-AAAGCTT---CAG------C-------CCA-------TAG-TTT-CTAAT---CCGT-T-G-AA-ACACTTGCTGT-A-G-TCT-G--TCAAGGTGCTCTCTGAAA
gi|12 : TGG--ATGTAG-ACGCTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GTAG-A-ACGCCTTCC-A-A-TGA-T--TCGAAATGTTC-CTTAAAAGT--CCTTGAGAATA-------CTA-TAATGTCGTTCAAGTAGATAATGCga
gi|13 : attggtctgcaCCAA-CTGTA---AA-G-G-C--TG-TTCTCTCTTTATGTTGTTC
gi|14 : aA-------TAA-TTAAGTCATCTAAATAAATAAAACA-AATCT-TCAA-GTGAAGATCACCTAGACACT-GT---TCCTGGAG-GC-GTTGATAGGTTGCGGG-GGCATT-CGCTAAT-Catagatttccacctgatggtatcccgacttcatatcaataacagagaagtacttgtttcctgctaaacagtctaacatttcc
gi|15 : tCCCAACTCCAATTGCCTGATGATTGTTGTTTCCCATT
gi|16 : atcaagagcctcttatagttctcgaTGGAC----TG----GGTGTTAAATCCGT-AAGTGGTCTGGCA-A-----------GTTTTGA-AAA-----A----TTTCT-AATGAAT--TTCCGGTAGTAgtaccatgaag
gi|2 : TTCCTCTAGGCTTCTTACC-A------GTGGCCATGATG----AGGATCAA----------TGGCCTCGCT-A-----------TCTGTGA-GGA-----A----TTCAA-AATAAAT--ATCCGGTAGTAACCTGCGAAACCAA-AAAACTGTCTAACTTCCT-CTGGAGTTT--TTGGAACGGA-CC-A-GTTC-TTAACCTTACTTG-CCT-TGTCAGGGTAGGGTCTGC-CT-GGAC-TCCTTC---GG--GTGA---AACAA---TGTGGCCAACAT------AGNNNNNNN-NNNNNNNNNNN--NNNNNNNTTAC-CTTGGTCAT-AAG-AAAGAAA---CAC------T-------TTTTGGAAGAGAA-TTT-TAACC---TCTG-TCG-AA-A-ATAAGTTCTAA-A-CGC-T----GAAATGTTC-TTCAAATGTAATTG-GAGCAAA-------CGA-TTACATCGTCCACATAAATGAAACA-AATTT-TCAA--TGTAGATCGGCCTAACA-T--TCT-TGCTTGAAGTC-TCTGATATGTCGCGGG-AG-GTT-TACAAGT-CCAAAAGG---CA-TGTTTT-----T-T-GAATTC--GAAGAATCCAAGGGGTCCAATCTGTGACCAA-A-GCC--GT-T-CTCTGTTTA
gi|3 : tgaagtaaatctgtcctttaacaggtcaaaagttctgtcttgggctggtccccatgTTTCTTCTGTTTCTTTCCT-TAGACTTTTTGCCCAAGAGT-GTGAA-----------GGCATTAAGTCAGTCA-ATGGTCCGTCTCAC----------TCTAT----AA-----AGCTGTCTCT-AG--AAT--CGTCTATAGAAGCCGACAAAACC-A-GAAAATCTCGAACAGCCT-CTGG--TGT--TTGGT-TTGG-CC-A-GTGA-TTGACTCTTCTCAGTCT-TGTC----TG--ATC-AATCT-CTACACCCTTC-------TCTG---AAC-AATGTGTA-CCAGAA-------ACTTGACCT-TCCTTTTGAAA--AATCG-----CACTTGG--ATGGAG-CAAGTTT---AAG------TTGGCCTCCTT-------GGA-TTT-TGT----------T-G-AGCC-ACAAGCTGT-A-G-TGT-TAACTGGAATGTCC-CTCAAACGT--CT-TGCAAAAA-------TCA-TCACA-CTCTCATGAATTTAACACAGCATACTTCAAATTCAGCATCAGCT--ATA-TGGTTC-TCCATCAA-TCAGCTGATATGTCGCTGGTAGAATT-TGTGAGT-CCAAAAGG---CA-T--CGT-----TAC-AA-------TAAAATCCTAATGGTCCAA-CTGAA---AA-ATG-C--AG-TACGCTCCTTATGA-ACTTC-GAACGATCTCGactttctttcagaatttcaatttgatgatatccggctttcatggatccaaaatggtgaaatactggtttccatagaggaatccaagatatcctcaatttgggggaggcgtag
gi|4 : tcAA-----A----TTCCTGAATAAATC-TTCCTAAAGTATCCTGCAAATCCGATGAA--TTCCTAACTTCTT-CTGTATTGT--TTGGTATTGG-CC-AAGCTT-ACAACTTTGGAAA-TCT-TTTC----AGCG-TC-GG-TTTCTAC-AACTTC---TG--ACAA---AAC-AACATGT--CCTACATGTACGTATTCAACCCATTTTCTTAAAG--AATTT----ACACTT-----TTTAGTAAAGTTT---CAAATTTGCT-------TCT-----------TTGATGCGC---ACTC---G-AA-A-ACTGGTTGT-A-G-TGT-C--TCTCGATGCTT-TTGAAATGT-----TGAGAAAAAAGAAAACAA-TTACGTCATCAATAAAAATGCAGCA-AGTTT-TCAAA-TGTAGATCTCCCAAA-A-C-ATCCATGCATTAA-GC-GCTGGTATGTAGCTGG-TGC--C-CGCAAAA-ACCAATGA---CA-TA-CGG-----T-T-AAATTC--ATATAAGCTTAGCGGACCAA-CTGTA---AATA-C-T--GG-T-CTCGCTTTATGGTT-TCG-cactttggatatccggatgtcattcatgagtaaaagaacttatgttcccgccatacattccaaagaatcctcaatcgtggaagagcgta
gi|5 : gctaCCCATTTGCAGTTGACAGACGATTGTTGTTTCCCTTTTTTCTTTTTT-TA-----TTTG---AAGA-TTGTGGAC----TA----GGCGTAAGATCCGT-AAGTGGTCTGGCA-AG----------TTTG-GA-GAA-----A----TTTCT-GATAAAT--TTCCGGTAGTAACCAATAAATCCTA-GAAATTTCCCGACCTCTT-CAGGTGTTC--TTGGTGTTGG-CC-A-GGAC-CTGACTTTATCCA-CCT-TGTC----TGGAATT-GG-CT-CTAT-TCCATT---GG--CCGA---GAT-A---TGT--CCAACAT------ATTTAACCT-TAGTCTGGAAA--AATTG----GCACTTGG--ATGGAG-ACAGTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GCAG-A-ACTCTTTCC-A-A-TCT-T--TCGAGATGTTC-ATCAAATGT--CCGTGATAATA-------CTA-TGATATCGTCCAAGTAGATAATGCA-TATGC-T-AAGGTTAATATCT-GAAAATA-T-GTCC-TCCATCAG-TC-GTTGGTACGTGGCAGG-GGCATT-GGCTAAT-CCAAAAGA---CA-TG-CGC-----T-C-AAACTC--GAAAAATCCAAGTGGTCCGA-CAGTG---AA-G-G-C--GG-TGCGCCCTTTGTGGTTCTCC-G--CTATCTCGtagaattccaccttgatgtaaccgactcatatcggataaacggagatgtacttattccagctaaacagtctaacatttcccccatcccttggtcattaggcgtctctcttcgtccttttgttaattggcgatattcgatgcaaa
gi|6 : CCCATCTCCAGTTGACCGACGATAATTGTTTCCCTTTCTTCTT
gi|7 : aatctttgaaattttcagtgatgtaccatttcaaagctaaacactctagcttacgggcaggataattttcttcagctggtgtaagtcctctgcttgcgtatccaatgactcgcttcatcccatcctggtcttggtaaagaatggttccaattcctcaggtactagcatcagtatgcagttgaaatcgtcatgtctgggtattcatgatcaagtataggtggcgatatcaagtgctgccgaaggacattgaaagcttcttgttgttctcaac---AAT-A---TGA--CCAAGAT------ACCCAACCT-TT-TATTCAAAGGAAT-G----ACACTTGG--A---AG-ATA--TT-----A------T-------CTT-------GAAACCA-TGATT---TCTC--------A-ATCTGTTGA-A-AATGAAC--TCTAAATGATG-TGCAAATGA--CTATGAAAATA-------TGAAGAATATCGTCGAAGTAGAGAAGACA-TAT-C-TAAAAATATTTATCACCTAAACA-A-------CCATTAA-TC-TTTGAAAGGTACTTGG-ATTGTT--GCAAAGACTAAAGGA---CA-TG-CGT-----A-C-AAATTCATGTAAA--CCAATTGGTcgaag
gi|8 : cttttcttgatcgaccttccttcccatcttaaccatTCTTTCTTTCCTCTAGGCTTCTTACC-A------GTGGCC----AT----GATGTCGA-TC----A-ATGGTCTCGCT-A-----------TCTGTGA-GAA-----A----TTCAA-AATAAAT--TTC--GCGGTACCCTGCGAAACAAA-G-AACTGTCTAACTTC-T-CTGGAGTTTTGTTGG-ACGGGCCC-A-GTTCTTTAACCTTACTTA-CCT-TGTC----AGGGTTT-GC-AT-GGAC-TCCTTC---AG--CTGA---AACAA---TGT--
gi|9 : tctgtcttgagctggtccccatgtccaggaagtgtgggggtaAATTC--ATATAAGC-TAGCGGACCAA-CTGTA---AA-T-A-CTTGG-T-CTCGCTTTA-GGTT-TCGAGAAggcca
Alignments
lowQualScore : 1 44444444 2222222222 555555555 44444444444 1111111111 11 1111111 1111 1111 11111111 11111 11 111111 222222222222 11111111 444444444444444444444444444444444444444444444444444444 11111 2222222 1111111 11 22222222 11111 111 11 222222222 111 1111111111111 11 4444
lowQualScore : 3 1 5 22 2 55555555 8888888888 666666666 6 55555555555 1 6 7777777777 0 5 33 3 1 7 6 7 6 55 1 1 4 6 4444444 6666 6 6 6 6 4444 6 6 7777 0 6666 5 999 5 1 55555555 888 88888 11 5 666666 77 1 5 55 777777777777 88888888 5 1 777 555555555555555555555555555555555555555555555555555555 22 1 4 888 33333 1 4 0 1 2222222 1 8888888 1 4 1 2 0 3 5 00 888 5 99 2222 33 77 0 44444444 2 0 1 5 5 0 1 5 1 66666 88 5 5 1 1 111 6 11 000000000 888 0 1 1 4 1 5 000 7777777777777 33 8 0000
lowQualScore : . . . .. . ........ .......... ......... . ........... . . .......... . . .. . . . . . . .. . . . . ....... .... . . . . .... . . .... . .... . ... . . ........ ... ..... .. . ...... .. . . .. ............ ........ . . ... ...................................................... .. . . ... ..... . . . . ....... . ....... . . . . . . . .. ... . .. .... .. .. . ........ . . . . . . . . . ..... .. . . . . ... . .. ......... ... . . . . . . ... ............. .. . ....
lowQualScore : 7 2 0 88 5 00000000 7777777777 000000000 7 00000000000 0 7 4444444444 4 7 66 0 0 5 3 5 7 33 0 8 2 7 8888888 5555 7 7 7 7 0000 7 7 9999 7 7777 7 444 7 0 44444444 888 55555 99 4 444444 66 0 7 00 111111111111 55555555 0 0 888 999999999999999999999999999999999999999999999999999999 00 1 4 888 88888 9 4 1 0 9999999 0 9999999 0 4 0 7 9 7 3 99 999 6 66 8888 55 66 2 44444444 5 5 0 0 0 9 0 9 0 22222 44 5 7 0 8 777 7 88 777777777 333 6 3 0 0 4 7 000 7777777777777 00 0 1111
consensus : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGAC----TG----GGCGTCAAATC-GT-A-GTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAANGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTGNANATCNCCCAAACA-T-GTCC-TCCATNAA-TC-GTTGATANGTNGCNGG-GGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
Reference ( family-4779 ) : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGAC----TG----GGCGTCAAATC-GT-A-GTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAANGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTGNANATCNCCCAAACA-T-GTCC-TCCATNAA-TC-GTTGATANGTNGCNGG-GGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
gi|1 : GAC----TGCCATGACGTCAA-TC----A-GTGGCTTGGCT-ACCTTAGCGAAATCTTTGATGAACTTGAA----TTACT-ATTGCATGATTCCTGTCATACCC-GC--AACGCA-GAAGTGATCTA---TCTTACTGGA------TTAG-ATGGT-CCGA-ATTC-TTGACCTTTGGAA-CTTCTGTCA---TGGGTCT-GG-CT-C-AC-TCCATC---GGTTGCGACACAAT-A---TGT--CC-ACAT------ACT--AC---TTCTCATGAAAGGAA-------ACACTT----ATTAGG-AGAGCTTCAGCAG------T-------CGT-----------TTC-TTAGC---CGTT-T-G--G-A-CATTGCTGT-ATC-TGT------AAGGTGCTC-CTGGAAGA-----GAGGGAAAAT------CTC-TTAAGT-ATCTAAATA-ATAAAACA--ATCT-T--AAGTGAAGATCACCT-AGCACT-GTTC-T---TGAG-CT-GTTG-TAGGT-GCGGG-GGATAT-CGC-TAT-C-----GAGCTCATTT-TGTCTAAAT-CAAAATTC--ATAAAATCCGAGAGGTCCGG-CAGTA---AA-A-G-C--AGTT-CTCTCCTTATGGTCTTCG-GTA--ATCTC
gi|10 : gaaattagcttgtcctttagaaagttaaatgcagcttcctgctccaggtcgcatctccatttggggtaccTTT---CAA------A-------CC----------A-TGT-TGAGTAAGTCTAGT-G-AA-T-ACAAAATCT-A-G-TCT-T--TCTAAATGCTG-CTCAAAACT--TGATGAGTACA-------CCA-AAATATCGTCTAAGTAGATAA-GTA-GAAAC-TCAAAGTTCTTGTCTCCCAAACA-T-G-CT-TCCATCAA-TC-GTTGAAAGGTTCCTGG-ACTATTGCACAAAtatctgatgatatcccgacttcatatccaggacactgaagtacgtatttcctgatagagagtctagaatttcctcaatccttggaagagcatagttgtctttaatggttcttgcgttcaactgtcgataatcaatgcaaa
gi|11 : atGTC----TGGGTCT-GG-CT-CAAC-TCCATCTTTGG--ACAC---AAT-A---TGT--CCTACAT------ACTTGACTT-TCCTCATGAAA--AAGGA----ACACTTCT--TAGGAG-AAAGCTT---CAG------C-------CCA-------TAG-TTT-CTAAT---CCGT-T-G-AA-ACACTTGCTGT-A-G-TCT-G--TCAAGGTGCTCTCTGAAA
gi|12 : TGG--ATGTAG-ACGCTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GTAG-A-ACGCCTTCC-A-A-TGA-T--TCGAAATGTTC-CTTAAAAGT--CCTTGAGAATA-------CTA-TAATGTCGTTCAAGTAGATAATGCga
gi|13 : attggtctgcaCCAA-CTGTA---AA-G-G-C--TG-TTCTCTCTTTATGTTGTTC
gi|14 : aA-------TAA-TTAAGTCATCTAAATAAATAAAACA-AATCT-TCAA-GTGAAGATCACCTAGACACT-GT---TCCTGGAG-GC-GTTGATAGGTTGCGGG-GGCATT-CGCTAAT-Catagatttccacctgatggtatcccgacttcatatcaataacagagaagtacttgtttcctgctaaacagtctaacatttcc
gi|15 : tCCCAACTCCAATTGCCTGATGATTGTTGTTTCCCATT
gi|16 : atcaagagcctcttatagttctcgaTGGAC----TG----GGTGTTAAATCCGT-AAGTGGTCTGGCA-A-----------GTTTTGA-AAA-----A----TTTCT-AATGAAT--TTCCGGTAGTAgtaccatgaag
gi|2 : TTCCTCTAGGCTTCTTACC-A------GTGGCCATGATG----AGGATCAA----------TGGCCTCGCT-A-----------TCTGTGA-GGA-----A----TTCAA-AATAAAT--ATCCGGTAGTAACCTGCGAAACCAA-AAAACTGTCTAACTTCCT-CTGGAGTTT--TTGGAACGGA-CC-A-GTTC-TTAACCTTACTTG-CCT-TGTCAGGGTAGGGTCTGC-CT-GGAC-TCCTTC---GG--GTGA---AACAA---TGTGGCCAACAT------AGNNNNNNN-NNNNNNNNNNN--NNNNNNNTTAC-CTTGGTCAT-AAG-AAAGAAA---CAC------T-------TTTTGGAAGAGAA-TTT-TAACC---TCTG-TCG-AA-A-ATAAGTTCTAA-A-CGC-T----GAAATGTTC-TTCAAATGTAATTG-GAGCAAA-------CGA-TTACATCGTCCACATAAATGAAACA-AATTT-TCAA--TGTAGATCGGCCTAACA-T--TCT-TGCTTGAAGTC-TCTGATATGTCGCGGG-AG-GTT-TACAAGT-CCAAAAGG---CA-TGTTTT-----T-T-GAATTC--GAAGAATCCAAGGGGTCCAATCTGTGACCAA-A-GCC--GT-T-CTCTGTTTA
gi|3 : tgaagtaaatctgtcctttaacaggtcaaaagttctgtcttgggctggtccccatgTTTCTTCTGTTTCTTTCCT-TAGACTTTTTGCCCAAGAGT-GTGAA-----------GGCATTAAGTCAGTCA-ATGGTCCGTCTCAC----------TCTAT----AA-----AGCTGTCTCT-AG--AAT--CGTCTATAGAAGCCGACAAAACC-A-GAAAATCTCGAACAGCCT-CTGG--TGT--TTGGT-TTGG-CC-A-GTGA-TTGACTCTTCTCAGTCT-TGTC----TG--ATC-AATCT-CTACACCCTTC-------TCTG---AAC-AATGTGTA-CCAGAA-------ACTTGACCT-TCCTTTTGAAA--AATCG-----CACTTGG--ATGGAG-CAAGTTT---AAG------TTGGCCTCCTT-------GGA-TTT-TGT----------T-G-AGCC-ACAAGCTGT-A-G-TGT-TAACTGGAATGTCC-CTCAAACGT--CT-TGCAAAAA-------TCA-TCACA-CTCTCATGAATTTAACACAGCATACTTCAAATTCAGCATCAGCT--ATA-TGGTTC-TCCATCAA-TCAGCTGATATGTCGCTGGTAGAATT-TGTGAGT-CCAAAAGG---CA-T--CGT-----TAC-AA-------TAAAATCCTAATGGTCCAA-CTGAA---AA-ATG-C--AG-TACGCTCCTTATGA-ACTTC-GAACGATCTCGactttctttcagaatttcaatttgatgatatccggctttcatggatccaaaatggtgaaatactggtttccatagaggaatccaagatatcctcaatttgggggaggcgtag
gi|4 : tcAA-----A----TTCCTGAATAAATC-TTCCTAAAGTATCCTGCAAATCCGATGAA--TTCCTAACTTCTT-CTGTATTGT--TTGGTATTGG-CC-AAGCTT-ACAACTTTGGAAA-TCT-TTTC----AGCG-TC-GG-TTTCTAC-AACTTC---TG--ACAA---AAC-AACATGT--CCTACATGTACGTATTCAACCCATTTTCTTAAAG--AATTT----ACACTT-----TTTAGTAAAGTTT---CAAATTTGCT-------TCT-----------TTGATGCGC---ACTC---G-AA-A-ACTGGTTGT-A-G-TGT-C--TCTCGATGCTT-TTGAAATGT-----TGAGAAAAAAGAAAACAA-TTACGTCATCAATAAAAATGCAGCA-AGTTT-TCAAA-TGTAGATCTCCCAAA-A-C-ATCCATGCATTAA-GC-GCTGGTATGTAGCTGG-TGC--C-CGCAAAA-ACCAATGA---CA-TA-CGG-----T-T-AAATTC--ATATAAGCTTAGCGGACCAA-CTGTA---AATA-C-T--GG-T-CTCGCTTTATGGTT-TCG-cactttggatatccggatgtcattcatgagtaaaagaacttatgttcccgccatacattccaaagaatcctcaatcgtggaagagcgta
gi|5 : gctaCCCATTTGCAGTTGACAGACGATTGTTGTTTCCCTTTTTTCTTTTTT-TA-----TTTG---AAGA-TTGTGGAC----TA----GGCGTAAGATCCGT-AAGTGGTCTGGCA-AG----------TTTG-GA-GAA-----A----TTTCT-GATAAAT--TTCCGGTAGTAACCAATAAATCCTA-GAAATTTCCCGACCTCTT-CAGGTGTTC--TTGGTGTTGG-CC-A-GGAC-CTGACTTTATCCA-CCT-TGTC----TGGAATT-GG-CT-CTAT-TCCATT---GG--CCGA---GAT-A---TGT--CCAACAT------ATTTAACCT-TAGTCTGGAAA--AATTG----GCACTTGG--ATGGAG-ACAGTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GCAG-A-ACTCTTTCC-A-A-TCT-T--TCGAGATGTTC-ATCAAATGT--CCGTGATAATA-------CTA-TGATATCGTCCAAGTAGATAATGCA-TATGC-T-AAGGTTAATATCT-GAAAATA-T-GTCC-TCCATCAG-TC-GTTGGTACGTGGCAGG-GGCATT-GGCTAAT-CCAAAAGA---CA-TG-CGC-----T-C-AAACTC--GAAAAATCCAAGTGGTCCGA-CAGTG---AA-G-G-C--GG-TGCGCCCTTTGTGGTTCTCC-G--CTATCTCGtagaattccaccttgatgtaaccgactcatatcggataaacggagatgtacttattccagctaaacagtctaacatttcccccatcccttggtcattaggcgtctctcttcgtccttttgttaattggcgatattcgatgcaaa
gi|6 : CCCATCTCCAGTTGACCGACGATAATTGTTTCCCTTTCTTCTT
gi|7 : aatctttgaaattttcagtgatgtaccatttcaaagctaaacactctagcttacgggcaggataattttcttcagctggtgtaagtcctctgcttgcgtatccaatgactcgcttcatcccatcctggtcttggtaaagaatggttccaattcctcaggtactagcatcagtatgcagttgaaatcgtcatgtctgggtattcatgatcaagtataggtggcgatatcaagtgctgccgaaggacattgaaagcttcttgttgttctcaac---AAT-A---TGA--CCAAGAT------ACCCAACCT-TT-TATTCAAAGGAAT-G----ACACTTGG--A---AG-ATA--TT-----A------T-------CTT-------GAAACCA-TGATT---TCTC--------A-ATCTGTTGA-A-AATGAAC--TCTAAATGATG-TGCAAATGA--CTATGAAAATA-------TGAAGAATATCGTCGAAGTAGAGAAGACA-TAT-C-TAAAAATATTTATCACCTAAACA-A-------CCATTAA-TC-TTTGAAAGGTACTTGG-ATTGTT--GCAAAGACTAAAGGA---CA-TG-CGT-----A-C-AAATTCATGTAAA--CCAATTGGTcgaag
gi|8 : cttttcttgatcgaccttccttcccatcttaaccatTCTTTCTTTCCTCTAGGCTTCTTACC-A------GTGGCC----AT----GATGTCGA-TC----A-ATGGTCTCGCT-A-----------TCTGTGA-GAA-----A----TTCAA-AATAAAT--TTC--GCGGTACCCTGCGAAACAAA-G-AACTGTCTAACTTC-T-CTGGAGTTTTGTTGG-ACGGGCCC-A-GTTCTTTAACCTTACTTA-CCT-TGTC----AGGGTTT-GC-AT-GGAC-TCCTTC---AG--CTGA---AACAA---TGT--
gi|9 : tctgtcttgagctggtccccatgtccaggaagtgtgggggtaAATTC--ATATAAGC-TAGCGGACCAA-CTGTA---AA-T-A-CTTGG-T-CTCGCTTTA-GGTT-TCGAGAAggcca
blockSeqs : A C C GA C CAAGAGT ATGATG ATCCGTAA C C T . AGCTG G C G A T G A T AC G T C . AGTTTTG AACG C . A T ACTT G . AGGG GTCT T TCT A A TTTGGA . AATG GG T GTACGT TG T A CC NNNNNNNTTA GGTCATA T A . TTTTTGGAAGAGAATTTTAACCTCTGTCGAAA AA C A AA TAAC T T A TAATTG C AAGAAAA C A A T G T GC ACT C AG TCTT TC CA TGGTTC C C G A G T T TAGAA GC A A C A . . GT TAC ATG T A G A T ACC ATGCAGTA GT A AACG
blockSeqs : C T . GG C AAGATT TG GTCAGTCA . G G . A . . G G G A G . AA C A C . AGTTT TATT . . . . TCTC . . . TCT . CA . T GGG . AACA A A . NN N . NN GGAATGA CTTAGG . C . ATTTGCTTCTTTGATGCGCACTCGAAA TT G . G ACT A . A TTGAT T . T . A T G A G AC C AT GAAG AC TA CATCCA C G . . G T G ACTA C T . C A . . A TT G T T T A . . TACTTGGT AC . CT
blockSeqs : T . . . A TA ATCCGTAA . . A . A . . T T T A T . AT T T T . ATTGT TGTT . . . . GGAA . . . ATC . GG . T TGA . AA . A . TG C . CC AAGGAA GGATGT . A . TTGGCCTCCTTGGATTTTGTTGAGCC GC C . G TT G . T TCCTT A . A . T A A A A CT C GG GTAG GG CT TGTCC G G . . T C G GGCA T A . C T . . G TT A G T C A . . GGCTGTT TC .
blockSeqs : AT TCA . . G . A . . T A A A A . AC T C T . TGTTC TTT . . . . ATCC . . . ATT . CT . T GGC . AA . T . CA C . TT AATTTA GGATGG . A . ACCATGTTGAGTAAGTCTAGTGAAT AA C . A GT G . C TCCGT A . G . T C A C A TT C AA CAGC AG CA TGCT C C . . T C T GGCA T G . C A . . G TC G T A T A . . AGCCGTT T .
blockSeqs : . . . . G . A . . G C T G . . . G T . . TGT ACG . . . . ACTT . . . TTT . CT . A AGC . A . A . TA C . AG AATTGG GGATGG . A . CCCATAGTTTCTAATCCGTTGAAAC AA G . A TT G . T ACTAT A . C . C C T A A TT C G GTAG TC AA CTGT G T . . T A T ATTG C A . T G . . . AC A G A T G . . TACTGGT T
blockSeqs : A . . . . TC . GG . T T . A . A . CA C . T AATCG TTT . C . TCCTGAATTATGTATTCTCTGTAGA TG G . G CT T . T TCTT T . A . T C A T T GC A A TAAT AC TA TTCT C C . . C G A AGG G T . . . T C A . . GGCGGTG
blockSeqs : . A . GGA . T . TCCTGAATTATGTATTCTCTGCAGA TC C . G TT G . T TT T . T . G T G G T C . . ATTT T T A C T . . G A T TGC . A
blockSeqs : . TCTTGAAACCATGATTTCTCA CT G . A T T . . G . A T G .
blockSeqCons : TN******** ATCCGTAA* *********** A********* ** AGTTT** TATT **** CG* GGN***** *** CG AATCG******* GGATGG** *** G** TT*** TCCGT** ******* N* CA TGTCC*** *** TC*******
originalCons : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGAC----TG----GGCGTCAAATC-GT-A-GTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATCG----ACACTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAANGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTGNANATCNCCCAAACA-T-GTCC-TCCATNAA-TC-GTTGATANGTNGCNGG-GGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
finalCons : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGACTN--------GGCGTCAAATCCGTAA-GTGGTCTGGCT-A-----------TCTGTGA-GAAA---------TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTATTGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CTCG-AC-TCCNTCGGN-----CGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAAAATCG-------CACTTGGATGG--AG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-AG--TGTTT---CGAGATGCTC-CTCAAANGTCCGT--GAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCAN-ATNC-TCAAAGTGNANATCNCCCAAACATGTCC---TCCATNAA-TC-GTTGATANGTNGCNGG-GGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGTTC-------AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
Alignments
lowQualScore : 1 44444444 1111 11 3333 44444444444 1111111111 11 1111111 11 1111 111 11111111 11111 11 111111 33333333333 1111 11111111 444444444444444444444444444444444444444444444444444444 11111 2222222 1111111 11 22222222 11111 111 11 222222222 111 1111111111111 11 4444
lowQualScore : 3 1 5 22 2 55555555 0000 3 66 1111 6 55555555555 1 6 7777777777 0 5 33 3 1 7 6 7 6 55 1 1 4 6 4444444 33 3 6 6 6 6 4444 6 6 7777 0 6666 5 333 5 1 55555555 888 88888 11 5 666666 77 1 5 55 33333333333 2222 88888888 5 1 777 555555555555555555555555555555555555555555555555555555 22 1 4 888 33333 1 4 0 1 2222222 1 8888888 1 4 1 2 0 3 5 00 888 5 99 2222 33 77 0 44444444 2 0 1 5 5 0 1 5 1 66666 88 5 5 1 1 111 6 11 000000000 888 0 1 1 4 1 5 000 7777777777777 33 8 0000
lowQualScore : . . . .. . ........ .... . .. .... . ........... . . .......... . . .. . . . . . . .. . . . . ....... .. . . . . . .... . . .... . .... . ... . . ........ ... ..... .. . ...... .. . . .. ........... .... ........ . . ... ...................................................... .. . . ... ..... . . . . ....... . ....... . . . . . . . .. ... . .. .... .. .. . ........ . . . . . . . . . ..... .. . . . . ... . .. ......... ... . . . . . . ... ............. .. . ....
lowQualScore : 7 2 0 88 5 00000000 6666 7 55 7777 7 00000000000 0 7 4444444444 4 7 66 0 0 5 3 5 7 33 0 8 2 7 8888888 33 0 7 7 7 7 0000 7 7 9999 7 7777 7 000 7 0 44444444 888 55555 99 4 444444 66 0 7 00 77777777777 1111 55555555 0 0 888 999999999999999999999999999999999999999999999999999999 00 1 4 888 88888 9 4 1 0 9999999 0 9999999 0 4 0 7 9 7 3 99 999 6 66 8888 55 66 2 44444444 5 5 0 0 0 9 0 9 0 22222 44 5 7 0 8 777 7 88 777777777 333 6 3 0 0 4 7 000 7777777777777 00 0 1111
consensus : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGACNNGGCGTCAA-ATC-GT-AGTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTACGGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CNAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATC-G---CA----CTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAANGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTGNANATCNCCCAAACA-T-GTCC-TCCATNAA-TC-GTTGATANGTNGCNGG-GGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
Reference ( family-4779 ) : CCCATCTCCAGTTGACCGACGATTGTTGTTTCCCTTTTTTCTTTCCTCTAGGCTTCTTGCC-AAGA-T-GTGGACTNGGCGTCAA-ATCCGTAAGTGGTCTGGCT-A-----------TCTGTGA-GAA-----A----TTCCT-AATAAAT--TTCCNGTAGTANCCTGCGAAACCNA-GAAACTNTCTAACTTCTT-CTGGAGTTT--TTGGTATTGG-CC-A-GTTC-TTGACCTTNCNNA-CCT-TGTC----TGGGNTC-GG-CT-CGAC-TCCNTC---GG--NCGA---AAC-A---TGT--CCAACAT------ACTCGACCT-TTCTCTTGAAA--AATC-G---CA----CTTGG--ATGGAG-ANAGTTT---CAA------T-------CCT-------GAA-TTN-TGNGT---TCTC-T-G-AG-A-ACNNGTTGT-A-G-TGT-T--TCGAGATGCTC-CTCAAANGT--CCGTGAGAANA-------CNA-TNACGTCGTCCAAGTAGATAANGCA-NATNC-TCAAAGTGNANATCNCCCAAACA-T-GTCC-TCCATNAA-TC-GTTGATANGTNGCNGG-GGCGTT-CGCAAAT-CCAAAAGA---CA-TG-CGT-----T-C-AAATTC--GTAAAATCCNAGCGGTCCGA-CTGTA---AA-A-G-C--GG-T-CTCTCTTTATGGTNCTCG-GAAC-ATCTCG
gi|1 : GACGTCAA--TC----AGTGGCTTGGCT-ACCTTAGCGAAATCTTTGATGAACTTGAA----TTACT-ATTGCATGATTCCTGTCATACCC-GC--AACGCA-GAAGTGATCTA---TCTTACTGGA------TTAG-ATGGT-CCGA-ATTC-TTGACCTTTGGAA-CTTCTGTCA---TGGGTCT-GG-CT-C-AC-TCCATC---GGTTGCGACACAAT-A---TGT--CC-ACAT------ACT--AC---TTCTCATGAAAGGAA---A---CA----CTT----ATTAGG-AGAGCTTCAGCAG------T-------CGT-----------TTC-TTAGC---CGTT-T-G--G-A-CATTGCTGT-ATC-TGT------AAGGTGCTC-CTGGAAGA-----GAGGGAAAAT------CTC-TTAAGT-ATCTAAATA-ATAAAACA--ATCT-T--AAGTGAAGATCACCT-AGCACT-GTTC-T---TGAG-CT-GTTG-TAGGT-GCGGG-GGATAT-CGC-TAT-C-----GAGCTCATTT-TGTCTAAAT-CAAAATTC--ATAAAATCCGAGAGGTCCGG-CAGTA---AA-A-G-C--AGTT-CTCTCCTTATGGTCTTCG-GTA--ATCTC
gi|10 : gaaattagcttgtcctttagaaagttaaatgcagcttcctgctccaggtcgcatctccatttggggtaccgactgccatTTT---CAA------A-------CC----------A-TGT-TGAGTAAGTCTAGT-G-AA-T-ACAAAATCT-A-G-TCT-T--TCTAAATGCTG-CTCAAAACT--TGATGAGTACA-------CCA-AAATATCGTCTAAGTAGATAA-GTA-GAAAC-TCAAAGTTCTTGTCTCCCAAACA-T-G-CT-TCCATCAA-TC-GTTGAAAGGTTCCTGG-ACTATTGCACAAAtatctgatgatatcccgacttcatatccaggacactgaagtacgtatttcctgatagagagtctagaatttcctcaatccttggaagagcatagttgtctttaatggttcttgcgttcaactgtcgataatcaatgcaaa
gi|11 : atGTC----TGGGTCT-GG-CT-CAAC-TCCATCTTTGG--ACAC---AAT-A---TGT--CCTACAT------ACTTGACTT-TCCTCATGAAA--AA---GGAACA----CTTCT--TAGGAG-AAAGCTT---CAG------C-------CCA-------TAG-TTT-CTAAT---CCGT-T-G-AA-ACACTTGCTGT-A-G-TCT-G--TCAAGGTGCTCTCTGAAA
gi|12 : TGG--ATGTAG-ACGCTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GTAG-A-ACGCCTTCC-A-A-TGA-T--TCGAAATGTTC-CTTAAAAGT--CCTTGAGAATA-------CTA-TAATGTCGTTCAAGTAGATAATGCga
gi|13 : attggtctgcaCCAA-CTGTA---AA-G-G-C--TG-TTCTCTCTTTATGTTGTTC
gi|14 : aA-------TAA-TTAAGTCATCTAAATAAATAAAACA-AATCT-TCAA-GTGAAGATCACCTAGACACT-GT---TCCTGGAG-GC-GTTGATAGGTTGCGGG-GGCATT-CGCTAAT-Catagatttccacctgatggtatcccgacttcatatcaataacagagaagtacttgtttcctgctaaacagtctaacatttcc
gi|15 : tCCCAACTCCAATTGCCTGATGATTGTTGTTTCCCATT
gi|16 : atcaagagcctcttatagttctcgaTGGACTGGGTGTTAA-ATCCGTAAGTGGTCTGGCA-A-----------GTTTTGA-AAA-----A----TTTCT-AATGAAT--TTCCGGTAGTAgtaccatgaag
gi|2 : TTCCTCTAGGCTTCTTACC-A------GTGGCCATGATG--AGGATC----AATGGCCTCGCT-A-----------TCTGTGA-GGA-----A----TTCAA-AATAAAT--ATCCGGTAGTAACCTGCGAAACCAA-AAAACTGTCTAACTTCCT-CTGGAGTTT--TTGGAACGGA-CC-A-GTTC-TTAACCTTACTTG-CCT-TGTCAGGGTAGGGTCTGC-CT-GGAC-TCCTTC---GG--GTGA---AACAA---TGTGGCCAACAT------AGNNNNNNN-NNNNNNNNNNN--NNNN-N---NNTTACCTTGGTCAT-AAG-AAAGAAA---CAC------T-------TTTTGGAAGAGAA-TTT-TAACC---TCTG-TCG-AA-A-ATAAGTTCTAA-A-CGC-T----GAAATGTTC-TTCAAATGTAATTG-GAGCAAA-------CGA-TTACATCGTCCACATAAATGAAACA-AATTT-TCAA--TGTAGATCGGCCTAACA-T--TCT-TGCTTGAAGTC-TCTGATATGTCGCGGG-AG-GTT-TACAAGT-CCAAAAGG---CA-TGTTTT-----T-T-GAATTC--GAAGAATCCAAGGGGTCCAATCTGTGACCAA-A-GCC--GT-T-CTCTGTTTA
gi|3 : tgaagtaaatctgtcctttaacaggtcaaaagttctgtcttgggctggtccccatgTTTCTTCTGTTTCTTTCCT-TAGACTTTTTGCCCAAGAGT-GTGAA---GGCATTAA-GTCAGTCAATGGTCCGTCTCAC----------TCTAT----AA-----AGCTGTCTCT-AG--AAT--CGTCTATAGAAGCCGACAAAACC-A-GAAAATCTCGAACAGCCT-CTGG--TGT--TTGGT-TTGG-CC-A-GTGA-TTGACTCTTCTCAGTCT-TGTC----TG--ATC-AATCT-CTACACCCTTC-------TCTG---AAC-AATGTGTA-CCAGAA-------ACTTGACCT-TCCTTTTGAAA--AATC-G---CA----CTTGG--ATGGAG-CAAGTTT---AAG------TTGGCCTCCTT-------GGA-TTT-TGT----------T-G-AGCC-ACAAGCTGT-A-G-TGT-TAACTGGAATGTCC-CTCAAACGT--CT-TGCAAAAA-------TCA-TCACA-CTCTCATGAATTTAACACAGCATACTTCAAATTCAGCATCAGCT--ATA-TGGTTC-TCCATCAA-TCAGCTGATATGTCGCTGGTAGAATT-TGTGAGT-CCAAAAGG---CA-T--CGT-----TAC-AA-------TAAAATCCTAATGGTCCAA-CTGAA---AA-ATG-C--AG-TACGCTCCTTATGA-ACTTC-GAACGATCTCGactttctttcagaatttcaatttgatgatatccggctttcatggatccaaaatggtgaaatactggtttccatagaggaatccaagatatcctcaatttgggggaggcgtag
gi|4 : tcAA-----A----TTCCTGAATAAATC-TTCCTAAAGTATCCTGCAAATCCGATGAA--TTCCTAACTTCTT-CTGTATTGT--TTGGTATTGG-CC-AAGCTT-ACAACTTTGGAAA-TCT-TTTC----AGCG-TC-GG-TTTCTAC-AACTTC---TG--ACAA---AAC-AACATGT--CCTACATGTACGTATTCAACCCATTTTCTTAAAG--AATTTA---CA----CTT-----TTTAGTAAAGTTT---CAAATTTGCT-------TCT-----------TTGATGCGC---ACTC---G-AA-A-ACTGGTTGT-A-G-TGT-C--TCTCGATGCTT-TTGAAATGT-----TGAGAAAAAAGAAAACAA-TTACGTCATCAATAAAAATGCAGCA-AGTTT-TCAAA-TGTAGATCTCCCAAA-A-C-ATCCATGCATTAA-GC-GCTGGTATGTAGCTGG-TGC--C-CGCAAAA-ACCAATGA---CA-TA-CGG-----T-T-AAATTC--ATATAAGCTTAGCGGACCAA-CTGTA---AATA-C-T--GG-T-CTCGCTTTATGGTT-TCG-cactttggatatccggatgtcattcatgagtaaaagaacttatgttcccgccatacattccaaagaatcctcaatcgtggaagagcgta
gi|5 : gctaCCCATTTGCAGTTGACAGACGATTGTTGTTTCCCTTTTTTCTTTTTT-TA-----TTTG---AAGA-TTGTGGACTAGGCGTAAG-ATCCGTAAGTGGTCTGGCA-AG----------TTTG-GA-GAA-----A----TTTCT-GATAAAT--TTCCGGTAGTAACCAATAAATCCTA-GAAATTTCCCGACCTCTT-CAGGTGTTC--TTGGTGTTGG-CC-A-GGAC-CTGACTTTATCCA-CCT-TGTC----TGGAATT-GG-CT-CTAT-TCCATT---GG--CCGA---GAT-A---TGT--CCAACAT------ATTTAACCT-TAGTCTGGAAA--AATTGG---CA----CTTGG--ATGGAG-ACAGTTT---CAA------T-------CCT-------GAA-TTA-TGTAT---TCTC-T-GCAG-A-ACTCTTTCC-A-A-TCT-T--TCGAGATGTTC-ATCAAATGT--CCGTGATAATA-------CTA-TGATATCGTCCAAGTAGATAATGCA-TATGC-T-AAGGTTAATATCT-GAAAATA-T-GTCC-TCCATCAG-TC-GTTGGTACGTGGCAGG-GGCATT-GGCTAAT-CCAAAAGA---CA-TG-CGC-----T-C-AAACTC--GAAAAATCCAAGTGGTCCGA-CAGTG---AA-G-G-C--GG-TGCGCCCTTTGTGGTTCTCC-G--CTATCTCGtagaattccaccttgatgtaaccgactcatatcggataaacggagatgtacttattccagctaaacagtctaacatttcccccatcccttggtcattaggcgtctctcttcgtccttttgttaattggcgatattcgatgcaaa
gi|6 : CCCATCTCCAGTTGACCGACGATAATTGTTTCCCTTTCTTCTT
gi|7 : aatctttgaaattttcagtgatgtaccatttcaaagctaaacactctagcttacgggcaggataattttcttcagctggtgtaagtcctctgcttgcgtatccaatgactcgcttcatcccatcctggtcttggtaaagaatggttccaattcctcaggtactagcatcagtatgcagttgaaatcgtcatgtctgggtattcatgatcaagtataggtggcgatatcaagtgctgccgaaggacattgaaagcttcttgttgttctcaac---AAT-A---TGA--CCAAGAT------ACCCAACCT-TT-TATTCAAAGGAATG-A---CA----CTTGG--A---AG-ATA--TT-----A------T-------CTT-------GAAACCA-TGATT---TCTC--------A-ATCTGTTGA-A-AATGAAC--TCTAAATGATG-TGCAAATGA--CTATGAAAATA-------TGAAGAATATCGTCGAAGTAGAGAAGACA-TAT-C-TAAAAATATTTATCACCTAAACA-A-------CCATTAA-TC-TTTGAAAGGTACTTGG-ATTGTT--GCAAAGACTAAAGGA---CA-TG-CGT-----A-C-AAATTCATGTAAA--CCAATTGGTcgaag
gi|8 : cttttcttgatcgaccttccttcccatcttaaccatTCTTTCTTTCCTCTAGGCTTCTTACC-A------GTGGCCATGATGTCGA--TC----AATGGTCTCGCT-A-----------TCTGTGA-GAA-----A----TTCAA-AATAAAT--TTC--GCGGTACCCTGCGAAACAAA-G-AACTGTCTAACTTC-T-CTGGAGTTTTGTTGG-ACGGGCCC-A-GTTCTTTAACCTTACTTA-CCT-TGTC----AGGGTTT-GC-AT-GGAC-TCCTTC---AG--CTGA---AACAA---TGT--
gi|9 : tctgtcttgagctggtccccatgtccaggaagtgtgggggtaAATTC--ATATAAGC-TAGCGGACCAA-CTGTA---AA-T-A-CTTGG-T-CTCGCTTTA-GGTT-TCGAGAAggcca