lowQualScore : 1 7777777777 111111 111 2222222222222222222222222 222222222222222 111111 3333333333333333333 1111 11 1 5555 1 11 22222 1 11 1 3333333 11 1 3333333333 6666666666666666 22222 11
lowQualScore : 0 66 66 66 5 1111111111 7 222222 777 555 333 777 8888888888888888888888888 777 4 4 1 4 777777777777777 4 444444 8888888888888888888 5 0 5 0 77 5 6 5 5 0 0000 5 00 6 2 0 5 2 6666 3 5 1 2 11 00000 22 3 6 3 33 6 0 2222222 2 33 8 6 0 6 6 6 4 4444444444 6666666666666666 55555 33 4
lowQualScore : . .. .. .. . .......... . ...... ... ... ... ... ......................... ... . . . . ............... . ...... ................... . . . . .. . . . . . .... . .. . . . . . .... . . . . .. ..... .. . . . .. . . ....... . .. . . . . . . . .......... ................ ..... .. .
lowQualScore : 0 99 55 99 0 5555555555 4 888888 222 555 666 444 5555555555555555555555555 888 4 4 9 4 888888888888888 4 444444 8888888888888888888 0 7 7 7 99 7 0 7 0 8 6666 0 22 0 0 0 0 0 6666 9 7 0 7 00 00000 66 2 0 8 88 0 0 0000000 0 88 0 0 5 5 0 7 0 0000000000 2222222222222222 00000 88 0
consensus : TAGANTCCAGTAG--AAAATTTAGA--AAATG-CCA---CA--A-AGAGTAGAAATAAATTGATT------AAA-G-AGT--GTT---CAAAGATGGAAACAAAGCAAGATAGACAT----GATTT-A-AC--TTCAGTAANAGA---CAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAG-TGG--GAA-CAGTGACG-G-TGCTA----CT-GCATC-CAAAAGAGTGTGAAGGTT-TCCA-CAATGCATTATCCA-CTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAGAGACTTTGCATCCTGGAATACACTATTACAAGCTGC---AAAAAT--AAG-AAAACACACTGCAGTCCTACATATTGCAGATACAACTCCAGAGGATGAAGTN-C---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTNCCTTGAATAAAACACTG
Reference ( gi|1 ) : TAGAATCCAGTAG--AAAATTTAGA--AAATG-CCA---CAT-GCAGAGTAGAAATGAATTGATT------AAA-G-AGT--ATT---CAAAGATGGAAACAAAGCAAGATGGGCAT----GGTTC-A-AC--TTCAGAAACAGA---CAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAG-TGG--GAA-CAGCGACG-G-TGCTA----CT-GCATT-CAAAAGGGTGCGAAGGTT-TCCA-CAATACATTATGC--CTGTA-CTAAAGATGATCTATGTGCAGGGAACCTGATAT--CA-----CCAAAATATTTTGCATCCTAAAATACACTATTATAAGGTGT---ACGAGT--AAG-AAAACATACTGTAGTCCAACATATTGCAGGTACAACTCCAGAAGATGAAGTG-C---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
gi|2 : TAGAATCCAGTAG--AAAATTTAGA--AAATG-CCA-------G-AGAGGAAAACTCTATTGATT------AAA-G-ATT--GTT---CAAAGATGGAAACAAAGCAAGATAGACAT----GATTCTA-AC--TTCAATAAGAGG---CAGTAGA-A-ATAGTAAT-GG---------------TGGTGATAG-TGG------TAA-------------------TGGTAAAA-ACAGTAGTGATAG-TGG--GAA-CAGTGACG-G-TGCAA----CT-ACATC-AAAAAGAGTGTGAAGGTT-TCCA-CAATGCATTATTTA-CTGCA-CTAAAGATGATCCAAGTGC-GGGAACCTGCTAT--CAGAGACTTTAGAGACTTTGCGTCTTCGAATACACTATTACAAGCTGC---AAAAATAAAAA-AAAACACACAGCAGTCCTATATATTGCAGATACAA---------ATG----C-C---GTGCATCTCTAACCACA----------------GACAATGCAG-----AAGC--ATAATTTCCTTGAATAAAACACTG
gi|5 : acTAGAATCCAGTAG--AAAGTTTAGA--AAATA-CCA---CA----AG-GTAGAAATAAATTGCTT------ACA-G-AGT--GTT---CAAAGATGGAAACAAAGTAAGATTGGGAT----GGTTT-A-AT--TTCAGTAACAGA---CAGTCAA-A-ATAATAAT-GGTGATGGTAAAACCAGTAGTGATAG-TGGGAACAGTGACCGTGCTTCTGCATCCAAGNGGTAAAA-CCAGTAGTGATAG-TGG--GAA-CAGTGGCC-G-TGCTT----CT-GCATC-CAAAAGAGTGTGAAGGTT-TCCA-CAATACACTATCCA-CTGTA-CTAAAGATGATTTAAGTGCAGGGAACCTGATaac
gi|4 : cacTAAACTCCAGTAG--AAAAT---AA--AAATA-ACAAAACATCACAGAGCAGAAATAAATTGATT------AAA-----T--ATTGCATACAGACGGAAACAAGGCAAGATAGACAT----CATTT-C-AC--TTCAGTAA-GGG---TAGCAGA-A-ACAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAACA-CCAGTAGTGATAG-T-G--GAA-CAGTGACA-G-TGCAA----CT-GCAGG-TAAAAGAGTGTGAAGGCT-TCCA-CAATAAATTATCCA-CTGCA-CTAAAGAAGATCCAAATACAGGGAACCTGATAT--CA-----GCA----ACCCCCCA-CCTGGAATACGCTATTACAAGCTGCAAAAAAAGT--AAGTAATACA
gi|7 : acTAAATTCCAATGGCAGAAATTTTGA--AAACGGCCA-------AC-GAGTAGAAAT--ATTTATTCCAATCAAACG-AGTGTATT---CACAGATAGAACCAAAACAAG-TAAACATC---GATTT-ACACTTTTCAAGTA-AGA---GTGCAGA-G-TTAAT--CTGG---------------TGGTGGTAA-T-G------TGG-------------------TGGT-AAA-CCAGTAGTGATAGTTGGGCGAATCAGTGACG-GATGCTA----CTGGCATTCCAAAAGAGTGTGAATGTT-TCCATCAATGCATTAT
gi|10 : cacTAGA-TACAGTAG--AAAATT-AGA--AAAAG-CCA---CG-----GGGTAGAAATGAATTGATT------AAA-G--GT--GTT---CAAAGATGGAAACAAAGGA--ATAGGAAT----G------------------ATAGA---CAGTAGA-A-ATAAC-AT-GG---------------TGGTGGCAGTTGG------TGA-------------------TGA-GAAA-CCAGtcac
gi|13 : acAGTCC-GTAG--AAAATTTAGAACAAATG-CCA----AT-A-AGAGTAGAAATGAATTGATT------AAA-G-AG---ATT---CAA
gi|9 : aAG--AAAATTTAGA--AAATG-CCA---CA-----GAGTAGAAAAAAATTGATT------AAA-G-AGT--GCT---CAAAGATGGATACAAAGCAAGATGAACAT----AGTTT-A-AC--TTCAGCAAGAGA---CAGTAGA-A-ATAATAAC-GG---------------TGGTGGCAG-TG
gi|8 : AA--AAAATT--GA--AAGAG-CTA---TA----AAAAAAAAAATAAA-------------AA-GCAGT--GCTG--CAAAGA-GGATACAA-GCAAGAATAACATTAAAGATTT-A-ACA-TTCAGCA-CAGAGGACAGTAGACACATAATAAC-G----------------TGGTGGCAG-TGG------T-A-------------------TTGTAAAAACCAGTAAT-ATAG-TTG--GAA-CAGTGACAAG-TGCTA----CG-CCATC-CAACAAAGTGC-AGGGTTATCCA-CAATACA-TATCCA-CTGCATCTAAAGATGAtaataaacattaaatatcagttcatatttggg
gi|15 : aaATTGATT------AGA-T-ATT--GTT---CAAAGATGGGAACAAAGCAAGATGGGCAT----GG
gi|3 : GT--GTT---CAAAGATGGAAACAAAACAAAATATACAT----GATTT-A-AC--TTCAGTAAGAGA---CAGAAGA-A-ATAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGATAAAA-ACAATAGTTATAG-TGG--GAA-CAGTGACG-G-TGCAA----CT-ACATC-CAAAAGAGTGTGAAGGCT-TCCA-CAATGCATTAT-CTACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAACACTTTGCATCCCGGAATACACTTTTACAAGCTGC---AAAAAT--AAG-AAAACACACTGCAGTCCTACATATTGCAGATACACCTCCAGAAGATGAAGTGCC---ATGCATCTCTTACCACA----------------GACAATGCAG-----AAGCATATATTTTCCTTGAATAAAAC
gi|6 : gT--ATTA--TAAAGATGTAAACAAAGCAATATG---AT----G------------T----AACAGA---CA--AGA-A-ATAATAAC-GG---------------TGGC---AG-AGG------TGA-------------------TGGTAAAA-ACAATAGTGATGG-TGG--GAA-CAGTGACG-G-TGCTAAGTACT-GCATC-CAGA-GAGTGTGAAGGTT-TCCA-CAATACATTAT-CTACTGCA-CTAATGATGATCTATGTGGAGGGAACCCGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGGTGC---AAAAAT--AAG-AAAACATACTGCAGTCTTACATATTGC
gi|11 : tat-TGCTA----CT-GCATC-CAAAACAGTGCGAATGTTATCCA----------------CTGCA-TTAAAGAGGATCCAAGTGCAGGGAACCTGATATTATA-----CCAAGAGACTTTGCACCCTGGAATACACTGTTACAAGCTGC---A
gi|12 : AG-AAAACATAGTGCAATCCAA----TTGCAGATGCAACTCCAGAGGATGAAGTA-CACGGTGCATCTCTTACCAGAGGGCTTAATTACTAGGGGCAATGCAGAATTTAAGC--ATATTTACCaaa
gi|14 : GCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ACATTTACCTTGAACAAAACACT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CTAGATCCAGAAAATTTATAACGAAAACTAGCCGACAGCAGAA
Alignments
lowQualScore : 11111 2222 1111 222222222222222 111111 3333333333333333333 22222 111111 111111 5555555555555555 22222 11
lowQualScore : 6 66 11111 4 66 0 0 1111 0 55 55 4 4 55 3 3 2 1111 44 4 4 777 4 2 4 4 4 0 4 555555555555555 4 222222 4444444444444444444 4 66 5 5 5 4 9999 4 4 4 4 5 55555 2 2 1 666666 6 6 0 2 4 3 888888 3333333333333333 00000 11 1
lowQualScore : . .. ..... . .. . . .... . .. .. . . .. . . . .... .. . . ... . . . . . . . ............... . ...... ................... . .. . . . . .... . . . . . ..... . . . ...... . . . . . . ...... ................ ..... .. .
lowQualScore : 6 11 11111 8 11 1 1 1111 8 55 55 0 0 00 6 6 0 4444 88 0 0 000 0 4 0 0 0 8 0 000000000000000 0 888888 4444444444444444444 4 99 0 0 0 4 4444 4 4 4 4 0 88888 2 5 7 000000 7 0 8 5 2 2 555555 0000000000000000 00000 00 0
consensus : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATATCA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
Reference ( family-4769 ) : TAGANTCCAGTAG--AAAAT-----TTAGAA--AATGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-ANAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGTGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATATCA-----CCAAGAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACACACTGCAGTCCTACATATTGCAGATACAACTCCAGAGGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTNCCTTGAATAAAACACTG
gi|1 : TAGAATCCAGTAG--AAAAT-----TTAGAA--AATGCCACATGCAGAGTAGAAATGA--ATT--GATTAAA-G-AGTAT--T-CAAAGATGGAAACAAAGCAAGA-TGGGCAT----GGTT-CA-AC-TTC---AGAA-ACAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGCGAC-GG-TGC----TACTG-CAT-TCAAAAGGGTGCGAAGGTT-TCCA-CAATACATTATGC-CTGTA-CTAAAGATGATCTATGTGCAGGGAACCTGATATCA-----CCAAAATATTTTGCATCCTAAAATACACTATTATAAGGTGTACGAG---T--AAG-AAAACATACTGTAGTCCAACATATTGCAGGTACAACTCCAGAAGATGAAGT-GC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
gi|10 : TAGA-TACAGTAG--AAAAT-----T-AGAA--AAAGCCACG----GGGTAGAAATGA--ATT--GATTAAA-G--GTGT--T-CAAAGATGGAAACAAAGGA--A-TAGGAAT----GAT---------------------AG-ACAGTAGA-A-ATAAC-AT-GG---------------TGGTGGCAGTTGG------TGA-------------------TGA-GAAA-CCAG
gi|11 : ac-TGC----TACTG-CAT-CCAAAACAGTGCGAA-------------TG--TTATCCACTGCA-TTAAAGAGGATCCAAGTGCAGGGAACCTGATATTATA---CCAAGAGACTTTGCACCCTGGAATACACTGTTACAAGCTGCAAAA
gi|12 : AG-AAAACATAGTGCAATCC---A-ATTGCAGATGCAACTCCAGAGGATGAAGT-ACACGGTGCATCTCTTACCAGAGGGCTTAATTACTAGGGGCAATGCAGAATTTAAGC--ATATTTACC
gi|13 : AGTCC-GTAG--AAAAT-----TTAGAACAAATGCCAAT--AAGAGTAGAAATGA--ATT--GATTAAA-G-AG-AT--T-CAA
gi|14 : aGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ACATTTACCTTGAACAAAACACT
gi|15 : --ATT--GATTAGA-T-ATTGT--T-CAAAGATGGGAACAAAGCAAGA-TGGGCAT----G
gi|2 : TAGAATCCAGTAG--AAAAT-----TTAGAA--AATGCCA----GAGAGGAAAACTCT--ATT--GATTAAA-G-ATTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATTCTA-AC-TTC---AATA-AGAG-GCAGTAGA-A-ATAGTAAT-GG---------------TGGTGATAG-TGG------TAA-------------------TGGTAAAA-ACAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----AACTA-CAT-CAAAAAGAGTGTGAAGGTT-TCCA-CAATGCATTATTTACTGCA-CTAAAGATGATCCAAGTGC-GGGAACCTGCTATCAGAGACTTTAGAGACTTTGCGTCTTCGAATACACTATTACAAGCTGCAAAAA---TAAAAA-AAAACACACAGCAGTCCTATATATTGCAGATACAA---------ATG-----CC---GTGCATCTCTAACCACA----------------GACAATGCAG-----AAGC--ATAATTTCCTTGAATAAAACACTGg
gi|3 : acGTGT--T-CAAAGATGGAAACAAAACAAAA-TATACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGAAGA-A-ATAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGATAAAA-ACAATAGTTATAGT--GG-GAA-CAGTGAC-GG-TGC----AACTA-CAT-CCAAAAGAGTGTGAAGGCT-TCCA-CAATGCATTATCTACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATATCA-----CCAAAACACTTTGCATCCCGGAATACACTTTTACAAGCTGCAAAAA---T--AAG-AAAACACACTGCAGTCCTACATATTGCAGATACACCTCCAGAAGATGAAGTGCC---ATGCATCTCTTACCACA----------------GACAATGCAG-----AAGCATATATTTTCCTTGAATAAAACaac
gi|4 : gTAAACTCCAGTAG--AAAATAAAAATAACAA--AACATCACA----GAGCAGAAATAA--ATT--GATTAAA-T-ATTGC--A-TACAGACGGAAACAAGGCAAGA-TAGACAT----CATT-TC-AC-TTC---AGTA-AGGG--TAGCAGA-A-ACAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAACA-CCAGTAGTGATAGT--GG--AA-CAGTGAC-AG-TGC----AACTG-CAG-GTAAAAGAGTGTGAAGGCT-TCCA-CAATAAATTATCCACTGCA-CTAAAGAAGATCCAAATACAGGGAACCTGATATCA-----GCA----ACCCCCCA-CCTGGAATACGCTATTACAAGCTGCAAAAAAAGT--AAGTAATACA
gi|5 : acTAGAATCCAGTAG--AAAGT-----TTAGAA--AATACCACA--AGG--TAGAAATAA--ATT--GCTTACA-G-AGTGT--T-CAAAGATGGAAACAAAGTAAGA-TTGGGAT----GGTT-TA-AT-TTC---AGTA-ACAG-ACAGTCAA-A-ATAATAAT-GGTGATGGTAAAACCAGTAGTGATAG-TGGGAACAGTGACCGTGCTTCTGCATCCAAGNGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGGC-CG-TGC----TTCTG-CAT-CCAAAAGAGTGTGAAGGTT-TCCA-CAATACACTATCCACTGTA-CTAAAGATGATTTAAGTGCAGGGAACCTGAT
gi|6 : cacAAAGATGTAAACAAAGCAA-------TAT----GAT---------------GTA-ACAG-ACA--AGA-A-ATAATAAC-------------------GGTGGCAG-AGG------TGA-------------------TGGTAAAA-ACAATAGTGATGGT--GG-GAA-CAGTGAC-GG-TGCTAAGTACTG-CAT-CC-AGAGAGTGTGAAGGTT-TCCA-CAATACATTATCTACTGCA-CTAATGATGATCTATGTGGAGGGAACCCGATATCA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGGTGCAAAAA---T--AAG-AAAACATACTGCAGTCTTACATATTGC
gi|7 : tattattatTAAATTCCAATGGCAGAAAT-----TTTGAA--AACGGC-CA--ACGAGTAGAAATATTTATTCCAATCAAACG-AGTGTATT-CACAGATAGAACCAAAACAAG--TAAACATC---GATT-TACAC-TTTTCAAGTA-AGAG-T--GCAGA-G-TTAAT--CTGG---------------TGGTGGTAA-TG-------TGG-------------------TGGTAAA--CCAGTAGTGATAGTTGGGCGAATCAGTGAC-GGATGC----TACTGGCATTCCAAAAGAGTGTGAATGTT-TCCATCAATGCATTATTCAC
gi|8 : cacAA--AAAAT-----T--GAA--AGAGCTATA--AAAAA-AAAAATAA--A---------AA-GCAGTGC--TGCAAAGA-GGATACAA-GCAAGAATA-ACATTAAAGATT-TA-ACATTC---AGCACAGAGGACAGTAGACACATAATAAC-G----------------TGGTGGCAG-TGG------T-A-------------------TTGTAAAAACCAGTAAT-ATAGT--TG-GAA-CAGTGACAAG-TGC----TACGC-CAT-CCAACAAAGTGC-AGGGTTATCCA-CAATACA-TATCCACTGCATCTAAAGATGA
gi|9 : aaAG--AAAAT-----TTAGAA--AATGCCACA----GAGTAGAAAAAA--ATT--GATTAAA-G-AGTGC--T-CAAAGATGGATACAAAGCAAGA-TGAACAT----AGTT-TA-AC-TTC---AGCA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGCAG-TG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTAGATCCAGAAAATTTATAACGAAAACTAGCCGACAGCAGAA
Alignments
lowQualScore : 11111 2222 1111 222222222222222 111111 3333333333333333333 11111 111111 111111 5555555555555555 22222 11
lowQualScore : 6 66 11111 4 66 4 0 1111 0 55 55 4 4 55 3 3 2 1111 4 4 4 777 1 4 4 4 4 0 4 555555555555555 4 222222 4444444444444444444 4 66 5 5 5 4 9999 4 4 0 4 4 5 99 66666 2 1 666666 6 6 0 2 0 3 888888 3333333333333333 00000 11 1
lowQualScore : . .. ..... . .. . . .... . .. .. . . .. . . . .... . . . ... . . . . . . . ............... . ...... ................... . .. . . . . .... . . . . . . .. ..... . . ...... . . . . . . ...... ................ ..... .. .
lowQualScore : 6 11 11111 8 11 4 1 1111 8 55 55 0 0 00 6 6 0 4444 0 0 0 000 4 0 0 0 0 8 0 000000000000000 0 888888 4444444444444444444 4 99 0 0 0 4 4444 4 4 7 4 4 0 22 77777 5 7 000000 7 0 8 5 8 2 555555 0000000000000000 00000 00 4
consensus : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
Reference ( family-4769 ) : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
gi|1 : TAGAATCCAGTAG--AAAAT-----TTAGAA--AATGCCACATGCAGAGTAGAAATGA--ATT--GATTAAA-G-AGTAT--T-CAAAGATGGAAACAAAGCAAGA-TGGGCAT----GGTT-CA-AC-TTC---AGAA-ACAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGCGAC-GG-TGC----TACTG-CAT-TCAAAAGGGTGCGAAGGTT-TCCA-CAATACATTATGC-CTGTA-CTAAAGATGATCTATGTGCAGGGAACCTGATAT--CA-----CCAAAATATTTTGCATCCTAAAATACACTATTATAAGGTGTACGAG---T--AAG-AAAACATACTGTAGTCCAACATATTGCAGGTACAACTCCAGAAGATGAAGT-GC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
gi|10 : TAGA-TACAGTAG--AAAAT-----T-AGAA--AAAGCCACG----GGGTAGAAATGA--ATT--GATTAAA-G--GTGT--T-CAAAGATGGAAACAAAGGA--A-TAGGAAT----GAT---------------------AG-ACAGTAGA-A-ATAAC-AT-GG---------------TGGTGGCAGTTGG------TGA-------------------TGA-GAAA-CCAG
gi|11 : ac-TGC----TACTG-CAT-CCAAAACAGTGCGAA-------------TG--TTATCCACTGCA-TTAAAGAGGATCCAAGTGCAGGGAACCTGATATTATA-----CCAAGAGACTTTGCACCCTGGAATACACTGTTACAAGCTGCAAAA
gi|12 : AG-AAAACATAGTGCAATCC---A-ATTGCAGATGCAACTCCAGAGGATGAAGT-ACACGGTGCATCTCTTACCAGAGGGCTTAATTACTAGGGGCAATGCAGAATTTAAGC--ATATTTACC
gi|13 : AGTCC-GTAG--AAAAT-----TTAGAACAAATGCCAAT--AAGAGTAGAAATGA--ATT--GATTAAA-G-AG-AT--T-CAA
gi|14 : aGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ACATTTACCTTGAACAAAACACT
gi|15 : --ATT--GATTAGA-T-ATTGT--T-CAAAGATGGGAACAAAGCAAGA-TGGGCAT----G
gi|2 : TAGAATCCAGTAG--AAAAT-----TTAGAA--AATGCCA----GAGAGGAAAACTCT--ATT--GATTAAA-G-ATTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATTCTA-AC-TTC---AATA-AGAG-GCAGTAGA-A-ATAGTAAT-GG---------------TGGTGATAG-TGG------TAA-------------------TGGTAAAA-ACAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----AACTA-CAT-CAAAAAGAGTGTGAAGGTT-TCCA-CAATGCATTATTTACTGCA-CTAAAGATGATCCAAGTGC-GGGAACCTGCTAT--CAGAGACTTTAGAGACTTTGCGTCTTCGAATACACTATTACAAGCTGCAAAAA---TAAAAA-AAAACACACAGCAGTCCTATATATTGCAGATACAA---------ATG-----CC---GTGCATCTCTAACCACA----------------GACAATGCAG-----AAGC--ATAATTTCCTTGAATAAAACACTGg
gi|3 : acGTGT--T-CAAAGATGGAAACAAAACAAAA-TATACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGAAGA-A-ATAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGATAAAA-ACAATAGTTATAGT--GG-GAA-CAGTGAC-GG-TGC----AACTA-CAT-CCAAAAGAGTGTGAAGGCT-TCCA-CAATGCATTATCTACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAACACTTTGCATCCCGGAATACACTTTTACAAGCTGCAAAAA---T--AAG-AAAACACACTGCAGTCCTACATATTGCAGATACACCTCCAGAAGATGAAGTGCC---ATGCATCTCTTACCACA----------------GACAATGCAG-----AAGCATATATTTTCCTTGAATAAAACaac
gi|4 : gTAAACTCCAGTAG--AAAATAAAAATAACAA--AACATCACA----GAGCAGAAATAA--ATT--GATTAAA-T-ATTGC--A-TACAGACGGAAACAAGGCAAGA-TAGACAT----CATT-TC-AC-TTC---AGTA-AGGG--TAGCAGA-A-ACAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAACA-CCAGTAGTGATAGT--GG--AA-CAGTGAC-AG-TGC----AACTG-CAG-GTAAAAGAGTGTGAAGGCT-TCCA-CAATAAATTATCCACTGCA-CTAAAGAAGATCCAAATACAGGGAACCTGATAT--CA-----GCA----ACCCCCCA-CCTGGAATACGCTATTACAAGCTGCAAAAAAAGT--AAGTAATACA
gi|5 : acTAGAATCCAGTAG--AAAGT-----TTAGAA--AATACCACA--AGG--TAGAAATAA--ATT--GCTTACA-G-AGTGT--T-CAAAGATGGAAACAAAGTAAGA-TTGGGAT----GGTT-TA-AT-TTC---AGTA-ACAG-ACAGTCAA-A-ATAATAAT-GGTGATGGTAAAACCAGTAGTGATAG-TGGGAACAGTGACCGTGCTTCTGCATCCAAGNGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGGC-CG-TGC----TTCTG-CAT-CCAAAAGAGTGTGAAGGTT-TCCA-CAATACACTATCCACTGTA-CTAAAGATGATTTAAGTGCAGGGAACCTGAT
gi|6 : cacAAAGATGTAAACAAAGCAA-------TAT----GATG-TA-AC--------------AG-ACA--AGA-A-ATAATAAC-------------------GGTGGCAG-AGG------TGA-------------------TGGTAAAA-ACAATAGTGATGGT--GG-GAA-CAGTGAC-GG-TGCTAAGTACTG-CAT-CC-AGAGAGTGTGAAGGTT-TCCA-CAATACATTATCTACTGCA-CTAATGATGATCTATGTGGAGGGAACCCGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGGTGCAAAAA---T--AAG-AAAACATACTGCAGTCTTACATATTGC
gi|7 : tattattatTAAATTCCAATGGCAGAAAT-----TTTGAA--AACGGC-CA--ACGAGTAGAAATATTTATTCCAATCAAACG-AGTGTATT-CACAGATAGAACCAAAACAAG--TAAACATC---GATT-TACAC-TTTTCAAGTA-AGAG-T--GCAGA-G-TTAAT--CTGG---------------TGGTGGTAA-TG-------TGG-------------------TGGTAAA--CCAGTAGTGATAGTTGGGCGAATCAGTGAC-GGATGC----TACTGGCATTCCAAAAGAGTGTGAATGTT-TCCATCAATGCATTATTCAC
gi|8 : cacAA--AAAAT-----T--GAA--AGAGCTATA--AAAAA-AAAAATAA--A---------AA-GCAGTGC--TGCAAAGA-GGATACAA-GCAAGAATA-ACATTAAAGATT-TA-ACATTC---AGCACAGAGGACAGTAGACACATAATAAC-G----------------TGGTGGCAG-TGG------T-A-------------------TTGTAAAAACCAGTAAT-ATAGT--TG-GAA-CAGTGACAAG-TGC----TACGC-CAT-CCAACAAAGTGC-AGGGTTATCCA-CAATACA-TATCCACTGCATCTAAAGATGA
gi|9 : aaAG--AAAAT-----TTAGAA--AATGCCACA----GAGTAGAAAAAA--ATT--GATTAAA-G-AGTGC--T-CAAAGATGGATACAAAGCAAGA-TGAACAT----AGTT-TA-AC-TTC---AGCA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGCAG-TG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTAGATCCAGAAAATTTATAACGAAAACTAGCCGACAGCAGAA
Alignments
lowQualScore : 11111 2222 1111 222222222222222 111111 3333333333333333333 11111 111111 111111 5555555555555555 22222 11
lowQualScore : 6 66 11111 4 66 4 0 1111 0 55 55 4 4 55 3 3 2 1111 4 4 4 777 1 4 4 4 4 0 4 555555555555555 4 222222 4444444444444444444 4 66 5 5 5 4 9999 4 4 0 4 4 5 99 66666 2 1 666666 6 6 0 2 0 3 888888 3333333333333333 00000 11 1
lowQualScore : . .. ..... . .. . . .... . .. .. . . .. . . . .... . . . ... . . . . . . . ............... . ...... ................... . .. . . . . .... . . . . . . .. ..... . . ...... . . . . . . ...... ................ ..... .. .
lowQualScore : 6 11 11111 8 11 4 1 1111 8 55 55 0 0 00 6 6 0 4444 0 0 0 000 4 0 0 0 0 8 0 000000000000000 0 888888 4444444444444444444 4 99 0 0 0 4 4444 4 4 7 4 4 0 22 77777 5 7 000000 7 0 8 5 8 2 555555 0000000000000000 00000 00 4
consensus : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
Reference ( family-4769 ) : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
gi|1 : TAGAATCCAGTAG--AAAAT-----TTAGAA--AATGCCACATGCAGAGTAGAAATGA--ATT--GATTAAA-G-AGTAT--T-CAAAGATGGAAACAAAGCAAGA-TGGGCAT----GGTT-CA-AC-TTC---AGAA-ACAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGCGAC-GG-TGC----TACTG-CAT-TCAAAAGGGTGCGAAGGTT-TCCA-CAATACATTATGC-CTGTA-CTAAAGATGATCTATGTGCAGGGAACCTGATAT--CA-----CCAAAATATTTTGCATCCTAAAATACACTATTATAAGGTGTACGAG---T--AAG-AAAACATACTGTAGTCCAACATATTGCAGGTACAACTCCAGAAGATGAAGT-GC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
gi|10 : TAGA-TACAGTAG--AAAAT-----T-AGAA--AAAGCCACG----GGGTAGAAATGA--ATT--GATTAAA-G--GTGT--T-CAAAGATGGAAACAAAGGA--A-TAGGAAT----GAT---------------------AG-ACAGTAGA-A-ATAAC-AT-GG---------------TGGTGGCAGTTGG------TGA-------------------TGA-GAAA-CCAG
gi|11 : ac-TGC----TACTG-CAT-CCAAAACAGTGCGAA-------------TG--TTATCCACTGCA-TTAAAGAGGATCCAAGTGCAGGGAACCTGATATTATA-----CCAAGAGACTTTGCACCCTGGAATACACTGTTACAAGCTGCAAAA
gi|12 : AG-AAAACATAGTGCAATCC---A-ATTGCAGATGCAACTCCAGAGGATGAAGT-ACACGGTGCATCTCTTACCAGAGGGCTTAATTACTAGGGGCAATGCAGAATTTAAGC--ATATTTACC
gi|13 : AGTCC-GTAG--AAAAT-----TTAGAACAAATGCCAAT--AAGAGTAGAAATGA--ATT--GATTAAA-G-AG-AT--T-CAA
gi|14 : aGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ACATTTACCTTGAACAAAACACT
gi|15 : --ATT--GATTAGA-T-ATTGT--T-CAAAGATGGGAACAAAGCAAGA-TGGGCAT----G
gi|2 : TAGAATCCAGTAG--AAAAT-----TTAGAA--AATGCCA----GAGAGGAAAACTCT--ATT--GATTAAA-G-ATTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATTCTA-AC-TTC---AATA-AGAG-GCAGTAGA-A-ATAGTAAT-GG---------------TGGTGATAG-TGG------TAA-------------------TGGTAAAA-ACAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----AACTA-CAT-CAAAAAGAGTGTGAAGGTT-TCCA-CAATGCATTATTTACTGCA-CTAAAGATGATCCAAGTGC-GGGAACCTGCTAT--CAGAGACTTTAGAGACTTTGCGTCTTCGAATACACTATTACAAGCTGCAAAAA---TAAAAA-AAAACACACAGCAGTCCTATATATTGCAGATACAA---------ATG-----CC---GTGCATCTCTAACCACA----------------GACAATGCAG-----AAGC--ATAATTTCCTTGAATAAAACACTGg
gi|3 : acGTGT--T-CAAAGATGGAAACAAAACAAAA-TATACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGAAGA-A-ATAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGATAAAA-ACAATAGTTATAGT--GG-GAA-CAGTGAC-GG-TGC----AACTA-CAT-CCAAAAGAGTGTGAAGGCT-TCCA-CAATGCATTATCTACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAACACTTTGCATCCCGGAATACACTTTTACAAGCTGCAAAAA---T--AAG-AAAACACACTGCAGTCCTACATATTGCAGATACACCTCCAGAAGATGAAGTGCC---ATGCATCTCTTACCACA----------------GACAATGCAG-----AAGCATATATTTTCCTTGAATAAAACaac
gi|4 : gTAAACTCCAGTAG--AAAATAAAAATAACAA--AACATCACA----GAGCAGAAATAA--ATT--GATTAAA-T-ATTGC--A-TACAGACGGAAACAAGGCAAGA-TAGACAT----CATT-TC-AC-TTC---AGTA-AGGG--TAGCAGA-A-ACAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAACA-CCAGTAGTGATAGT--GG--AA-CAGTGAC-AG-TGC----AACTG-CAG-GTAAAAGAGTGTGAAGGCT-TCCA-CAATAAATTATCCACTGCA-CTAAAGAAGATCCAAATACAGGGAACCTGATAT--CA-----GCA----ACCCCCCA-CCTGGAATACGCTATTACAAGCTGCAAAAAAAGT--AAGTAATACA
gi|5 : acTAGAATCCAGTAG--AAAGT-----TTAGAA--AATACCACA--AGG--TAGAAATAA--ATT--GCTTACA-G-AGTGT--T-CAAAGATGGAAACAAAGTAAGA-TTGGGAT----GGTT-TA-AT-TTC---AGTA-ACAG-ACAGTCAA-A-ATAATAAT-GGTGATGGTAAAACCAGTAGTGATAG-TGGGAACAGTGACCGTGCTTCTGCATCCAAGNGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGGC-CG-TGC----TTCTG-CAT-CCAAAAGAGTGTGAAGGTT-TCCA-CAATACACTATCCACTGTA-CTAAAGATGATTTAAGTGCAGGGAACCTGAT
gi|6 : cacAAAGATGTAAACAAAGCAA-------TAT----GATG-TA-AC--------------AG-ACA--AGA-A-ATAATAAC-------------------GGTGGCAG-AGG------TGA-------------------TGGTAAAA-ACAATAGTGATGGT--GG-GAA-CAGTGAC-GG-TGCTAAGTACTG-CAT-CC-AGAGAGTGTGAAGGTT-TCCA-CAATACATTATCTACTGCA-CTAATGATGATCTATGTGGAGGGAACCCGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGGTGCAAAAA---T--AAG-AAAACATACTGCAGTCTTACATATTGC
gi|7 : tattattatTAAATTCCAATGGCAGAAAT-----TTTGAA--AACGGC-CA--ACGAGTAGAAATATTTATTCCAATCAAACG-AGTGTATT-CACAGATAGAACCAAAACAAG--TAAACATC---GATT-TACAC-TTTTCAAGTA-AGAG-T--GCAGA-G-TTAAT--CTGG---------------TGGTGGTAA-TG-------TGG-------------------TGGTAAA--CCAGTAGTGATAGTTGGGCGAATCAGTGAC-GGATGC----TACTGGCATTCCAAAAGAGTGTGAATGTT-TCCATCAATGCATTATTCAC
gi|8 : cacAA--AAAAT-----T--GAA--AGAGCTATA--AAAAA-AAAAATAA--A---------AA-GCAGTGC--TGCAAAGA-GGATACAA-GCAAGAATA-ACATTAAAGATT-TA-ACATTC---AGCACAGAGGACAGTAGACACATAATAAC-G----------------TGGTGGCAG-TGG------T-A-------------------TTGTAAAAACCAGTAAT-ATAGT--TG-GAA-CAGTGACAAG-TGC----TACGC-CAT-CCAACAAAGTGC-AGGGTTATCCA-CAATACA-TATCCACTGCATCTAAAGATGA
gi|9 : aaAG--AAAAT-----TTAGAA--AATGCCACA----GAGTAGAAAAAA--ATT--GATTAAA-G-AGTGC--T-CAAAGATGGATACAAAGCAAGA-TGAACAT----AGTT-TA-AC-TTC---AGCA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGCAG-TG
blockSeqs : G CA AAAAA T CA A AA TT CC C C AT G A G TAAA C C A TCA T C G C C T TGATGGTAAAACCAG T GAACAG CCGTGCTTCTGCATCCAAG A TG C T A A TAAG G T A T T TA GAGAC G C AAGT T T C A ACACG GGGCTTAATTACTAGG AATTT AT A
blockSeqs : A . . T . T GA . . . . . . . G C . . . . T . . . . . . . . . . . . . . . . . . . . . . . G T TAA . T C A GCC . . . A
blockSeqs : C . . A . T AG . . . . . . . G . . . . . T . . . . . . . . . . . . . . . . . . . . . . . C T T . T . . CC . . . T
blockSeqs : A . . T . C AC . . . . . . . T . . . . . T . . . . . . . . . . . . . . . . . . . . . . . G T T . . . . . T
blockSeqs : T . . T . T AA . . . . . . . G . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . C . . . . . . . . G . . . . . C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . A . . . . . C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : AA**
originalCons : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
finalCons : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACAAA--GAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTAGATCCAGAAAATTTATAACGAAAACTAGCCGACAGCAGAA
Alignments
lowQualScore : 11111 2222 1111 222222222222222 111111 3333333333333333333 11111 111111 111111 5555555555555555 22222 11
lowQualScore : 6 66 11111 4 66 4 0 1111 0 55 55 4 4 55 3 3 2 1111 4 4 4 777 1 4 4 4 4 0 4 555555555555555 4 222222 4444444444444444444 4 66 5 5 5 4 9999 4 4 0 4 4 5 99 66666 2 1 666666 6 6 0 2 0 3 888888 3333333333333333 00000 11 1
lowQualScore : . .. ..... . .. . . .... . .. .. . . .. . . . .... . . . ... . . . . . . . ............... . ...... ................... . .. . . . . .... . . . . . . .. ..... . . ...... . . . . . . ...... ................ ..... .. .
lowQualScore : 6 11 11111 8 11 4 1 1111 8 55 55 0 0 00 6 6 0 4444 0 0 0 000 4 0 0 0 0 8 0 000000000000000 0 888888 4444444444444444444 4 99 0 0 0 4 4444 4 4 7 4 4 0 22 77777 5 7 000000 7 0 8 5 8 2 555555 0000000000000000 00000 00 4
consensus : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
Reference ( family-4769 ) : TAGANTCCAGTAG--AAAAT-----TTAGAA--AACGCCACA--AAGAGTAGAAATAA--ATT--GATTAAA-G-AGTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----TACTG-CAT-CCAAAAGAGTGCGAAGGTT-TCCA-CAATGCATTATCCACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGCTGCAAAAA---T--AAG-AAAACATACTGCAGTCCTACATATTGCAGATACAACTCCAGAAGATGAAGT-NC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
gi|1 : TAGAATCCAGTAG--AAAAT-----TTAGAA--AATGCCACATGCAGAGTAGAAATGA--ATT--GATTAAA-G-AGTAT--T-CAAAGATGGAAACAAAGCAAGA-TGGGCAT----GGTT-CA-AC-TTC---AGAA-ACAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGCGAC-GG-TGC----TACTG-CAT-TCAAAAGGGTGCGAAGGTT-TCCA-CAATACATTATGC-CTGTA-CTAAAGATGATCTATGTGCAGGGAACCTGATAT--CA-----CCAAAATATTTTGCATCCTAAAATACACTATTATAAGGTGTACGAG---T--AAG-AAAACATACTGTAGTCCAACATATTGCAGGTACAACTCCAGAAGATGAAGT-GC---GTGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ATATTTTCCTTGAATAAAACACTG
gi|10 : TAGA-TACAGTAG--AAAAT-----T-AGAA--AAAGCCACG----GGGTAGAAATGA--ATT--GATTAAA-G--GTGT--T-CAAAGATGGAAACAAAGGA--A-TAGGAAT----GAT---------------------AG-ACAGTAGA-A-ATAAC-AT-GG---------------TGGTGGCAGTTGG------TGA-------------------TGA-GAAA-CCAG
gi|11 : ac-TGC----TACTG-CAT-CCAAAACAGTGCGAA-------------TG--TTATCCACTGCA-TTAAAGAGGATCCAAGTGCAGGGAACCTGATATTATA-----CCAAGAGACTTTGCACCCTGGAATACACTGTTACAAGCTGCAAAA
gi|12 : AG-AAAACATAGTGCAATCC---A-ATTGCAGATGCAACTCCAGAGGATGAAGT-ACACGGTGCATCTCTTACCAGAGGGCTTAATTACTAGGGGCAATGCAGAATTTAAGC--ATATTTACC
gi|13 : AGTCC-GTAG--AAAAT-----TTAGAACAAATGCCAAT--AAGAGTAGAAATGA--ATT--GATTAAA-G-AG-AT--T-CAA
gi|14 : aGCATCTCTTACCACA----------------GACAATGCAG-----AAGC--ACATTTACCTTGAACAAAACACT
gi|15 : --ATT--GATTAGA-T-ATTGT--T-CAAAGATGGGAACAAAGCAAGA-TGGGCAT----G
gi|2 : TAGAATCCAGTAG--AAAAT-----TTAGAA--AATGCCA----GAGAGGAAAACTCT--ATT--GATTAAA-G-ATTGT--T-CAAAGATGGAAACAAAGCAAGA-TAGACAT----GATTCTA-AC-TTC---AATA-AGAG-GCAGTAGA-A-ATAGTAAT-GG---------------TGGTGATAG-TGG------TAA-------------------TGGTAAAA-ACAGTAGTGATAGT--GG-GAA-CAGTGAC-GG-TGC----AACTA-CAT-CAAAAAGAGTGTGAAGGTT-TCCA-CAATGCATTATTTACTGCA-CTAAAGATGATCCAAGTGC-GGGAACCTGCTAT--CAGAGACTTTAGAGACTTTGCGTCTTCGAATACACTATTACAAGCTGCAAAAA---TAAAAA-AAAACACACAGCAGTCCTATATATTGCAGATACAA---------ATG-----CC---GTGCATCTCTAACCACA----------------GACAATGCAG-----AAGC--ATAATTTCCTTGAATAAAACACTGg
gi|3 : acGTGT--T-CAAAGATGGAAACAAAACAAAA-TATACAT----GATT-TA-AC-TTC---AGTA-AGAG-ACAGAAGA-A-ATAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGATAAAA-ACAATAGTTATAGT--GG-GAA-CAGTGAC-GG-TGC----AACTA-CAT-CCAAAAGAGTGTGAAGGCT-TCCA-CAATGCATTATCTACTGCA-CTAAAGATGATCCAAGTGCAGGGAACCTGATAT--CA-----CCAAAACACTTTGCATCCCGGAATACACTTTTACAAGCTGCAAAAA---T--AAG-AAAACACACTGCAGTCCTACATATTGCAGATACACCTCCAGAAGATGAAGTGCC---ATGCATCTCTTACCACA----------------GACAATGCAG-----AAGCATATATTTTCCTTGAATAAAACaac
gi|4 : gTAAACTCCAGTAG--AAAATAAAAATAACAA--AACATCACA----GAGCAGAAATAA--ATT--GATTAAA-T-ATTGC--A-TACAGACGGAAACAAGGCAAGA-TAGACAT----CATT-TC-AC-TTC---AGTA-AGGG--TAGCAGA-A-ACAGTAAT-GG---------------TGGTGGTAG-TGG------TGA-------------------TGGTAACA-CCAGTAGTGATAGT--GG--AA-CAGTGAC-AG-TGC----AACTG-CAG-GTAAAAGAGTGTGAAGGCT-TCCA-CAATAAATTATCCACTGCA-CTAAAGAAGATCCAAATACAGGGAACCTGATAT--CA-----GCA----ACCCCCCA-CCTGGAATACGCTATTACAAGCTGCAAAAAAAGT--AAGTAATACA
gi|5 : acTAGAATCCAGTAG--AAAGT-----TTAGAA--AATACCACA--AGG--TAGAAATAA--ATT--GCTTACA-G-AGTGT--T-CAAAGATGGAAACAAAGTAAGA-TTGGGAT----GGTT-TA-AT-TTC---AGTA-ACAG-ACAGTCAA-A-ATAATAAT-GGTGATGGTAAAACCAGTAGTGATAG-TGGGAACAGTGACCGTGCTTCTGCATCCAAGNGGTAAAA-CCAGTAGTGATAGT--GG-GAA-CAGTGGC-CG-TGC----TTCTG-CAT-CCAAAAGAGTGTGAAGGTT-TCCA-CAATACACTATCCACTGTA-CTAAAGATGATTTAAGTGCAGGGAACCTGAT
gi|6 : cacAAAGATGTAAACAAAGCAA-------TAT----GATG-TA-AC--------------AG-ACA--AGA-A-ATAATAAC-------------------GGTGGCAG-AGG------TGA-------------------TGGTAAAA-ACAATAGTGATGGT--GG-GAA-CAGTGAC-GG-TGCTAAGTACTG-CAT-CC-AGAGAGTGTGAAGGTT-TCCA-CAATACATTATCTACTGCA-CTAATGATGATCTATGTGGAGGGAACCCGATAT--CA-----CCAAAAGACTTTGCATCCTGGAATACACTATTACAAGGTGCAAAAA---T--AAG-AAAACATACTGCAGTCTTACATATTGC
gi|7 : tattattatTAAATTCCAATGGCAGAAAT-----TTTGAA--AACGGC-CA--ACGAGTAGAAATATTTATTCCAATCAAACG-AGTGTATT-CACAGATAGAACCAAAACAAG--TAAACATC---GATT-TACAC-TTTTCAAGTA-AGAG-T--GCAGA-G-TTAAT--CTGG---------------TGGTGGTAA-TG-------TGG-------------------TGGTAAA--CCAGTAGTGATAGTTGGGCGAATCAGTGAC-GGATGC----TACTGGCATTCCAAAAGAGTGTGAATGTT-TCCATCAATGCATTATTCAC
gi|8 : cacAA--AAAAT-----T--GAA--AGAGCTATA--AAAAA-AAAAATAA--A---------AA-GCAGTGC--TGCAAAGA-GGATACAA-GCAAGAATA-ACATTAAAGATT-TA-ACATTC---AGCACAGAGGACAGTAGACACATAATAAC-G----------------TGGTGGCAG-TGG------T-A-------------------TTGTAAAAACCAGTAAT-ATAGT--TG-GAA-CAGTGACAAG-TGC----TACGC-CAT-CCAACAAAGTGC-AGGGTTATCCA-CAATACA-TATCCACTGCATCTAAAGATGA
gi|9 : aaAG--AAAAT-----TTAGAA--AATGCCACA----GAGTAGAAAAAA--ATT--GATTAAA-G-AGTGC--T-CAAAGATGGATACAAAGCAAGA-TGAACAT----AGTT-TA-AC-TTC---AGCA-AGAG-ACAGTAGA-A-ATAATAAC-GG---------------TGGTGGCAG-TG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): CTAGATCCAGAAAATTTATAACGAAAACTAGCCGACAGCAGAA