lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222 11111 2222 22 2222 111 222222222222222222222 222222 11111 33333333 22222 111111 11111 111 22 1 1111 22222 999999999999999999999999999999999 2222222 222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333 11 222222 33333 1 5555555555555555555555555555555555555555555555555555555555555555555555555555 1 33333 33 3333333333333333 111111 111111 222222222222 222222 222222222 11111 111 222222222222 666666666666666666666666 1111 666666666666666666666666666666 111111
lowQualScore : 5 5 444444 5 4 77 4 4 4 7 4 4 4 1 66 1 00000 4 4 4 4 55 0000 55 3 22 3 1111 3 3 222 3 888888888888888888888 3 6666 3 999 3 88 555 3 3 3 3 44 3 333333 4 4 4 4 55555 0 2 33333333 11111 5 222222 5 44444 444 00 5 5 6 5 2 6 4 99 2 1 6 2 2 4 0000 4 22222 5 0 666 777777777777777777777777777777777 33 5555555 777777777 5 1 8 5 8 8 3 8 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555 8 2 8 2 22 2 888888 3 3 4 0 99999 5 8 0 5 3 6 8 8 0 7777777777777777777777777777777777777777777777777777777777777777777777777777 3 00000 44 3 6 2222222222222222 5 111111 444444 5 5 333333333333 5 444444 5 55 444444444 66666 5 111 111111111111 0 8 4 4 4 66 4 555555555555555555555555 4 8888 7777 2222 8 4 4 4 4 222222222222222222222222222222 333333 888
lowQualScore : . . ...... . . .. . . . . . . . . .. . ..... . . . . .. .... .. . .. . .... . . ... . ..................... . .... . ... . .. ... . . . . .. . ...... . . . . ..... . . ........ ..... . ...... . ..... ... .. . . . . . . . .. . . . . . . .... . ..... . . ... ................................. .. ....... ......... . . . . . . . . . ............................................................................... . . . . .. . ...... . . . . ..... . . . . . . . . . ............................................................................ . ..... .. . . ................ . ...... ...... . . ............ . ...... . .. ......... ..... . ... ............ . . . . . .. . ........................ . .... .... .... . . . . . .............................. ...... ...
lowQualScore : 7 7 666666 0 4 11 4 4 4 4 4 4 4 1 11 3 00000 0 0 0 0 11 1111 00 6 55 6 2222 6 6 555 3 222222222222222222222 1 5555 1 222 3 22 888 1 1 3 3 66 3 999999 4 4 4 4 77777 3 9 66666666 99999 7 111111 7 33333 999 33 7 7 6 0 2 7 8 22 7 0 7 5 5 8 8888 3 77777 7 7 444 666666666666666666666666666666666 55 2222222 000000000 2 0 0 8 0 0 0 0 8 6666666666666666666666666666666666666666666666666666666666666666666666666666666 0 8 0 8 22 2 888888 2 2 5 2 22222 0 0 8 8 2 0 0 0 8 0000000000000000000000000000000000000000000000000000000000000000000000000000 3 00000 22 5 7 7777777777777777 7 888888 444444 7 7 111111111111 7 000000 0 11 444444444 22222 0 000 999999999999 3 9 4 4 4 11 4 888888888888888888888888 0 5555 9999 5555 0 0 0 0 0 444444444444444444444444444444 444444 888
consensus : TCATTGTGA-CATAGAA-ATAC--GC--AG-ACTTT-AAAC-CA-T-TTCCAGGAA-TNAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AATG-AAAAT-ATTT--A-GAA-G-AGTG---AA-A-TC-AAATA------------TAA-TT----CAAA-CA---A-TT-TT---T-AAATCT-ATT-AATATCAAT-A--AA-AA-TTN--TCTA-G-GAAA-TCATT-TTAATTCGACAAGATGATA---TTCATTNCTCTTA----AATTCTT--TTT-AAAC-A---G-AG-----TTCCATTC-GATC-ATTCA-GAA-TTCTTGAACCATGAAA-AGAGC-GTCT--TGGACATTTGTTGAATGGAA-ATGTTTGCGATTAA-T--ATACATGTA-ATGTATAAATGTTCATC-AACGCTTGGAGATT--------------ATGCATTC-ATTT-C--TTGTTTTGG-----TCAATTN-----AACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACACA-CAA-GAC---------AG----------GGGAAA-------AT-AAAAA-----AA---------GA--AATTT-AAG-TCGTCTATG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCAT--TTCTTCA-ATGAACGGCGAGTTCACC-AT-AACATCTAG-A-TAC-A---TGT-AC-ATT---GTATAAAG-GT---ACA-AGTCCGAATTA--------------TATTG---TTCATGC-AC-----TTCAA--AATTTTCTGTAT-CCTGGC-------------TTNAATCT-T---A--AT------TTTCAT-TT-GA-AA-T----T-TTCAA-C--T-A-GACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATT-AA-TA-C--G-AGGATAAAA-CAG-CTG-TCT-CA--T-GGTA---CAT---NT---AT------A-TGC----TT---AAA----T-C-CG-TT-TTC-GGCGAGGA-----GTGGGG-GGT--G---GGGT-GG--TTGAA----TCTCACTA---TTTTGC
Reference ( gi|4 ) : TCATTGTGA-CATAGAA-ATAC--AC--AG-ACTTT-AAAC-TA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--GCC--AT-AATT-AAAAT-ATTT--A-GAA-G-AGTG---AA-A-TT-AAATA------------TAA-TT----CAAA-CA---A-TT-CT---T-AAATCT-ATT-AATATCAAT-A--AA-AA-TTA--TCTA-G-GAAA-TCATT-TTAATTCGACAAGATGAAA---TTTATTCCTATGC----AATTCTT--GTT-AAAT-A---G-AG-----TTCCATTT-GTTC-CTTCA-GAA-TTCTTGAACCCTGAAA-AGGGC-GCCT--TGGACAATTGTTGAATGGAA-ATGTTTGCGACTAA-T--ATACATATAAATGTATAAATGTTCATC-AACGCTTGGAGATT--------------ATGCATTC-ATTTGCAATTGTTTTGA-----TCAATTC-----AAGTAATAGTAGGGCG-TAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAA-CCTAACTTTCACTTA-T---------------AG----------GGGAAA-------AT-AAAAA-----AA---------GA--TATTTAAAG-TCGTCTACG-CTCATAAATTGACGTA-TACTCAGTCGGAA------CCAAATAAATAGCCCAAGACTACCCATTGTTCTTCA-ATGAAAGGTGAGTTCA-C-AT-AACATCTAG-A-TAC-A---TGT-AC-ATT---GTATAAAG-GT---ACACAGCCCAAACTA--------------TATTA---TTCATGC-AC-----TTCAA-CAATTTTCTGTAT-CCTGGC-------------TTGAATCT-T---A--AT------TTTCAT-TT-GG-AA-T----T-TTCAA-C--T-G-GACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTT--TGAATT-AT-TA-T--G-AGAATAAAA-CAG-CTG-TCT-CA--T-GGTA---CAT---GT---AT------A-TGC----TT---AAA----T-C-CG-TT-TTC-GGCAAGGA-----GTAGGG-GGT-TG---GGGTTGG--TTGAA----TATCACTA---TTTTGC
gi|2 : TCATTGTGA--ATAGAA-ATAC--ACCAAG-ACTTT-AAACATA-T-TTCCAG-AA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGAATGCT-A-CACGC-TATG-ATAATT--GCC--AT-AATTTAAAATTATTT--A-GAA-G-AGTG---AA-A-TT-AAATA------------TAA-TT----CAAA-CA---A-TT-CT---TTAAATCT-ATT-AATATCAAT-A--AA-AA-TTA--TCTA-G-GAAA-TCATT-TTAATTCGACAAGATGAAA---TTTATTCCTATGC-----ATTCTTGGGTTAAAATAA---G-AG-----GTCCAGTT-GTTC-CTTCA-GAA-TTCTTGAACCCTGAAACAGGGCGGCCTTGTGGACAAGTGGGAAAT-GAA-ATGTTTGC-ACTAACT--ATACATAT-AATGTATAAATGTTCATC-AACGCCTGGAGA-T--------------ATGCATTCAATTTGC-ATTGTTTTGA-----TCAA-TC-----AA--AATA-TA-GGCGTTAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAA-CCTAAC-TTCACTTATT---------------AG----------GGGAAA-------ATGAAAAA-----AA---------GA--TATTTAAAGTTCGTCTACGACTCATAAATTGACGTATTACTCAGTCGGAA------CC-AATAAATAGCCCAAGACTACCCATT-TTCTT-A-A-GAAAGGTGA-TTCA-C-ATAAACATCTAGCA-TAC-AT--TGTAAC-ATT---GTATAAAG-GT---ACACAGCCCAAACTA--------------T-TTA---TTCATGCAAC-----TTCAA-ACATTTTCTGTAT-CCTGGC--------------TGAATCT-T---A--AT------TTTCAT-TTGGG-AA-T----TCTTCAA-CT-T-GCGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC------TC-AAGTTTGTGAATT-AT-TA-T--G-AGAATAAAA-CAGCCTGTTCT-CA--T-GGTA---CAT---GT---AT------ATTGC----TT---AAA----T-C-CGATT-TTC-GGCAAGGA------TAGGG-GGTCTG---GGGTTGGTTTTGAA----TATCACTA---TTTTGC
gi|1 : TCATTGTGG-CATAGAA-ATAC--GC--AG-ACTTC-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGC-GT-----ATGA-TG-T-A-CACGC-AATA-TTTATTTTATC--AT-AAT--GAAAT-TTTT--AAGAA-G-AGTG---AA-AATC-AAATACTGGTACATGTATAA-TT----CAAA-CA---A-TT-TTGTTT-TAATCT-GCT-AATATCCATTC--AA-AA-TT---TCTA-G-GAAA-TCATT-TTAATTCGACGAGATGATA---TTCATTGCTCTTA----AATTCCA--TTT-CAAC-A---G-GG-----TTTTATTC-AACC-AATTA-GAA-TTCTTGAATCTTGA------------T------CATTTGTTG--TAAAA-ATGT-------TAA-TCAACGCTTTTAAG-ATTTAA----TCCTA-AAC-----GAAAT-----------------GCATGC-AT------TTGTTTTGG-----CCAATTCAACTTAACTAATAGTAGGGCG-TAGCATTAAATGTTGCAT-AAAAACCTCGGGCCAAAACCCCAACTTTCACACA-C---------------AG--------------AC-------AT-AAAAA-----AAGGGGGGGGGGA--GGGTT--AG-TCGTCTGTG-ATTATAAATTGACGTG-TACTCAGTCGGGACTTAGTCTAAATAAATAGCCCAAGGCTACCCA-------TAA-AT-AAAGGTACATGTA-C-AG-AGC-CCCAA-A-TACTA---TGT-TCAATT---GT--------------------------------------------TG---TTCATGC-ACT----TTCAA--AATTTTCAGTAT-TCTGAC-------------T------T-T---G--AT------TTTCAT-TT-GA-AA-T----A-TTTAA-C--T-A-GACTAAAATCAG-GGG-ATGAAA-------C-CATTG----CTTC-AAGTC--TGAATT-AA-TA-T--G-AAGATAAAA-CAA-CTG-TCT-CA--T--------CATGTGGT---ATTTCAGAA-TGC----TT---TAA----T-C-CG-TT-TTC-GGTCAGAA-----GT-GGT-GGT-TG---GG--------TAAA----TCTCACTA---TTTTGCcacaaccactctgtcttttgaaatatattgtacatcaccaagaactgccccgaaactcccagttacattacaatcgtactgcaaccattttacctgcagtgac
gi|9 : cacatgtatgtgaaaattttgagatcgtcagtttatagtttatcaaagctgtcttaggagtatcttaagTCATTGTGATCAAAGAATATAC--GC--AGCACTCG-AAGC-CA-TGTTCCAGGAA-TTA-AT-A-G-TTCTCCCACATTTGCCATTCATCATGA-TGCT-A-CAAGCCTATG-ATAATT--ATC--ATTAATTGAAAAT-ATTTT-A-GAA-GCAGTG---AA-AATC-AAATA------------TGA-TT----CAAAACA---AATT-TT---T-ATATCT-ATTTAATATCAAT-A--AA-AA-TTT--TCTA-G-G-AA-TCATTATTAATTCGACAAGATG--A---TTTATGCTCTTGCTTTAAATTCTT--CTA-AAAA-ACACG-CGCGGCTTCCCATTTCGATCATTTCACGAATTTCTTTAACCATGAAA-acacactcggtctttaaatgttatgcacatcaccaagaactgccccgaaactcccagttacatacaattgaaccattacctgcagggacgttggagttcattatgtaactgttcacagaaataattgattaggggtcttgaaaatatctaacatcatcaaggtaatcaagaggattagcaatggtc
gi|6 : ggcatgttaacggaaaacttcctaaaggcattgttcataaagaaaactctttcttgagacatttctttagacaatttttaagatccctaagaatatcttaagcgtgtttatcaaagctgtctatgagtatcctaaactaagactgtctaagTCATTGTAA-CATAAAA-ATACGTACT-AG-ACTTT-TAAC-CA-T-TTCCAGGAA-TAAGAT-A-G-ATCAC--ACTTT-GCCGT-----ATGA-TGTT-A-AACGC-TATG-ATAATT--ATC--AT-AATG-GAAAT-ATCT--A-GAA-G-AGTG---AA-A----A---------------------T----CAAA-TA---A-TTATT---T-AAATCT-ATA-ATTTTCATT-T--GA-TA-CTT--TCCA-A-GCAG-AC----TGAAATCGGCGGGATGAAACG-TTCATTC
gi|20 : TCATTGTGA-CAAAGAA-CTAC--GC--AG-AGTCT-AAGC-CA-T-TTTCAGGAG-TCAGAT-A-G-TTGTC--ATTTTTATC-C-----ATGA-TGCG-A-CACTT-TATG-----------------AATG-AAAAT-ATTT-----AA-G-AGTGA--AA-A-TC-AAAT---------------A-TT----TAAA-CA---A-TC-TT---T-CAATTT-ATaagtctgaattaataggaagataaaagaagctgtctcatgtggtatttccagaatgcttaatccgtttttggtgaggagggaggtgggggtgggtgggtgggttgaacctcactattctgcacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|3 : gATTGTAA-CATAAAA-ATACGTACT-AG-ACTTTTAAAC-CA-T-TACCAGGAA-TAAGAT-ACGTTTCAC--ACATTTGCCGT-----ATGA-TGTTAA-AACGC-TATGAATAATT--ATCAAAT-AATG-TAAAT-ATTTAAA-AAA-G-AGTGAGAAA-A-TC-AA--A------------TAA-TT-------A-TA---A-TT--T---C-AAACCTCAAC-AACATTAAT-A--AA-Ac
gi|22 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaGA-CATAGAA-ATAT--GC--AG-ACTTT-AAAC-TA-T-TTCCAGAAA-T-----------------ACCTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AC-AATG-AAAAT-ATTT------------------A-A-TC-TAATA------------TAA-TT----CAAA-ccctcctaaggctaagaaattgtcatgttatgatacaatttcaacgctagactagaatcagggactgaaaaacgttcaattctcaaagtctgaataatagccgaagattaaaagagctgtctcatcgtatttcagaatacttaaatcatgtttcgcgaggacggaggtgtggggtgggtgggttgaacctcactaatcctttgcacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|18 : G-GCTTT-GAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTATC--AAATTTGCCGT-----AAGT-TGCT-A-CACGG-TATG-ATAATT--ATC--AT-TATG-AAAAC-CTTT--T-GAG-G-AGTGA--AA-A-TC-AAATA------------TAA-TT----TAAA-CA---A-TT-TT---T-AAATCT-ATT-AATGTCAAT-A--AA-A
gi|11 : T-AAAC-CAAT-TTGCAGAAAATCAGATTA-G-ATGTT--ATTTTTGCCAT------TGG-TACC-AACACGT-TACT-ATAATTT-ATC--AT-CAT--GAAAT-ATTT------A-G-AGTG---AACA-TC-ACA---------------AA-TTTTGCTAAA-CAT--C-TT-TT---T-TAATTT-ATC-AATATCAAA-A--AATAA-T----TCCACA-AAAA-TCATT-AAAATTCAAACAGATAATA---CTGATTC
gi|5 : gttcataagaaatttccagtaagacatatcttaggacaatttttgagatcatcttaagattatcttcaggtgttttatcaaaggttatctgaaagaacactaaacttaaaaacctcttaaaacgtattttgacaaacaagtgCGT-----ATGA-TGTT-A-CACGC-TATG-TTAATT--ATC--AT-TATT-AAAAT-ATTT--C-GAA-G-AGTG---AA-AATC-AAATA------------TAA-TT----CAAA-C---------CT---T-AAATCT-ATT-AATATTAAG-A--AA-AA-AAAATTCTA-G-GAAA-TCATT-TTAATTCCACAAGATGATA---TTCATTGCTTTTA----AATTCTC--TTT-AAAC-A---G-AG-----TTCCATTT-TATC-ATTCA-GAA-TTCTTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTAAATGAAATAT-TTTGCGATTAA-T--ATACATGTACATGTATAAATGTTCATCTAACCCT---AAACTAA------------ATACACTC-AT------TTGTTTTGGACAGTTCAATTG-----AACTAATGATAGGATG-TAGCATCAACTGTAGTAC-AAAAATT-CTGGCCAAAA-CCTAATTTTCACACA-CAAAGACAA-------AG----------GGGAAA-------AT-AAAAA-----AA---------GAAGAATT--AAG-TTGTCTATG-CTTATAAATTGACGTG-TATTCAATCGGGA------CCAAAT-------------------------CTTCA-TTGGACGGCGAGTTTGCC-AT-AACATTTA---------------------T---GTATAAGG-GT---ACAGAGTCTCAATTAAAATCAAGTTCAATTATTG---TTCATGCAAT-----TTCAA--AATTTTCTGTAT-CCTGGC-------------TTTAATCT-T---A--AT------TTTCAT-TT-GA-AA-C----T-TTCAA-C--C-A-GACCAAAATCAG-GGG-ATGAAA-------A-CGTTT----ATTC-AAGTC--TAAATT-AA-TA-T--G-AAGATAAAA-CAG-CTG-TCT-CA--T-GGTA---TTT---CA---GA------A-TGC----TTTTAAAA----T-C-CG-TT-TTC-TGCAAGGA-----G--GGA-GG---G---AGG-------TGAA----TCTCATTA---TTTTGCattcagaattcc
gi|7 : --AT-AAT--GAAAT-ATTT--A-GAAAG-AGTG---AA-AATC-AAATAATCCA-------TAACTT----CAAA-CA---A-TT-CT---T-AAATCT--TT-Aacatactgggtcttgaaatattatgcacatcactaggaactgccccgaaattcccagttacatacaatcg
gi|17 : attat---AA-A-TCCAAATA------------TGA-TT----CAAA-CACTTA-TT-TT---T-ATATCT-ATT-AATATCAAT-A--AA-AATTTC--TCTA-GCGAAA-TCA-T-TTAATTCGACAAGATGATATGCTTTGCTTCTTTA-----AATTC-----CT-AAAC-A---GTGG-----TTCCATTC-GATC-ATTCA-GAT-TTCTTTTAACCAGAAA-tccatgcttccatttgatactcttcaaactcagactaaaatcagaggtatgaaaccaaatcacgttcattccaagtctgaatttacctagcgaagataaaagagctgtcttcattggtatttcagatgcttaaattccgttttcggcgaggcgtggagtggtggcgtgggtgggcttgaacctttaccataattttgcacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|19 : gaA-TT----TAAA-CA---A-TT-TT---T-AAATCT-ATT-AATGTCAAT-A--AA-AA-
gi|8 : -AAATCT-AAT-ACTATCAAT-A--AA-AA-TGT--TGTA-G-GAAAATAATT-TTAATTCATTAAGATAACA---TTCATTGCCCTTA----AATTCTT--TTT-AGAC-A---G-AG-----TTCCATTT-GATCATTTCA-GAA-TCCTTGAACAATGGAA-AGAAT-GTCT--TGGAAATTTATTGAACGGAA-GTTTTTGCGATTAA-T--ATACATGTACAT-TATAAATGTTCATC-ATAGCTTGGAGATTTAATCCTTAGCTAAATGCATTC-ATTTGT-GCTGGCCAGT-----TCAATTG-----AACTAATAGTAAGGCG-TAG-ATCAACTGTAGCACAAAAAACC-CGGGTTGAAA-CGTAACTTTCAC--A-A---------------AGACAGAAAAAAGGGATATACATGTAT-AAAAAAGAAGAA---------GA---ATT--AAG-TTGTTTATG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTATCCATGGTTCTTCA-ATGAATGGCGAGTTCACC-AT-AACATCTAG-------G---TGT-ACTAAT---ATATTAAGCGTCGAATA-AAATCAAGTTT--------------TGTTAATTTTTATGC-ACT----TTCAA--AATGTTCTGTAT-CCTGGTAAGGAGGGGGGGGTTGAATCT-C---ACTAT------TTTgggcgttttggaggtttgttgaatggaaatgtttgcgattaatatacatatacttataaatcttcatcaacgcttcaacagttcaattgaattaatagtagggctt
gi|12 : TATCAAT-AGAAA-AA-AAA--TGTA-G-GAAA-TCATT-TCAATTCGACAAGATGATA---TTTGTTGTTCTTA----AATTCTC--TTT-AAAC-A---G-AG-----TTCCATTT-GATC-AATCA-GAA-TTCTTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTGAATGAAC-TTGTTTGCGAT------------------TGTATAAATGCTCATC-AACGCTTGGAGATT--------------
gi|19 : TAAAA-AGGGC-GTTT--TGGAGGTTTGTTGAATGGAA-ATGTTTGCGATTAA-T--ATACATAT--ACTTATAAATCTTCATC-AACGCTT-----------------------------------CAACAGT----------TCAATTG-----AATTAATAGTAGGGCtaatcctaaatgnnnnnnnnnnnnnnnnnnnnnnnnnccgtgccactgcagtatgtgcagtcgattgtatgtac
gi|16 : atttaaacaatttttaaatctattaatgtcaaTTGATC-AACGCTTGTAGAT---------------ATA------ATCTTCATTTGTTATGG-------AGTTC-----GA-------TAGGGCG-CAGCATCAATTGTAGTAC-AAAATCT-CCGGCCAAAA-CTTAACTTTCACACA-CAAGGACTGAAAAAAAAG----------GGGAAA-------ATAAAAAA-----AA---------GA--AATT--AAG-TTGTCTATG-ATTATAAATTtt
gi|10 : ttcaTTCACATGAACGGTGAGTTCA-CCAT-AAAATCTAA-AGTAT-AAAGTAT-AG-GCTCCCGAATAAAA-GC---A---AGTTCG--CT---------------TATTG---TTTAATC-ACATTTTTTTAA--AATTATCTGTATACTTGGC-------------TTTTATCT-TCGTA--AT------TTTAAT-TT-GA-AAAC----T-TTCAA-C--T-A-GACTAAA-------GG----------------CGT------CTTC-AAGTC--TGAATT-AA-TA-T--GAAGATTAAAA-CTG-TTG-TTT-CA--T-GG-----------GT---ATTTCAGAA-TGC----AT---AAAT---T-C-CG-TTGCTC-AGCAAGGA-----G--GGG-GGT-TA---GGA-------TGAA----TCTCACT
gi|7 : ctAAATCA--------------AATAA---TCCATA--AC-----TTCAAACAATT--------------C-------------TTAAATCT-T---T--ATCCATGCTTCCAT-TT-GATAC-T----C-TTCAAAC--TCA-GACTAAAATCAG-AGGTATGAAACCAAATCA-CGTTC----ATTCCAAGTC--TGAATTTACCTAGC--G-AAGATAAAA-GAG-CTG-TCTTCA--TTGGTA---T-T---TC---AG------A-TGC----TT---AAA----TTC-CG-TT-TTC-GGCGAGGC-----GTGGAGTGGT-GGCGTGGGTGGGC-TTGAACCTTTACCATAA---TTTTGCcatgtatttttgcacacactcggtcttggaaatattatgcacatcaccaagaactgcccgaaactcccagtgtgtacatacaatcgactgcacatactgcagtggca
gi|6 : attatataatgaaatatttagaaagagtga-------------TTAAATCTAT---A--AT------TTTCAT-TT-GATAC-T----T-TCCAA-G--C-A-GACTGAAATCGGCGGG-ATGAAA---------CGTTC----ATTC-AAGTC--TGAATT-AA-TA-G--G-AAGATAAAAGAAG-CTG-TCT-CATGT-GGTA---TTT---CC---AGA-----A-TGC----TT----AA----T-C-CG-TT-TTT-GGTGAGGAGGGAGGT-GGG-GGT-GGGT-GGGTGGG--TTGAA----CCTCACTA---TTCTGCacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|3 : tcattgtaacataaaaatacgtactagacttttaaccatttccaggaataagatagatcacactttgccgtatgatgttaaacgctatgataattatcataatggaaatatctagaagagtgaaaatcaaataattat---A--AT------TGTCATGTT-AT-GA-TACAAT-TTCAA-CGCT-A-GACTAGAATCAG-GGA-CTGAAA-------AACGTTCAATTCTCA-AAGTC--TGAATA-AT-AG-CCGA-AGATTAAAA-GAG-CTG-TCT-CA--T-CGTATTTCA----GA---AT------A---C----TT---AAA----T-CATG-TT-TC---GCGAGGACGGAGGTGTGG-GGT------GGGTGGG--TTGAA----CCTCACTAATCCTTTGCacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|23 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaattgtaacataaaaatacgtactagacttttaaaccattaccaggaataagatacgtttcacacatttgccgtatgatgttaaaacgctatgaataattatcaaataatgtaaatatttaaaaaagagtgagaaaatcaaataattataatttcaaacctcaacaacattaataaaaccctcctaaggctaagaAAAATCAG-GGA-ATTAAA-------A-CGTTC----CCTC-CA-TC--TGAATC--------------------A-CAT-CCA-TCT-TT--T-GG-----CAT---TTCAGA-------A-TGC----TT---CAA----TCC-CG-TT-TTC-acacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|8 : GAATAAAATCAA---G-TTT-----T-GTTA----AT---TT---TT------A-TGCACTTTC---AAAATGTT-C-TG-TA-TCCTGGTAAGGA-----G--GGG-GG------------GG--TTGAA----TCTCACTA---TTTTtaa
gi|14 : aaatctaatactatcaataaaaatgttgtaggaaaataattttaattcattaagataacattcattgcccttaaattctttttagacagagttccatttgatcatttcagaatccttgaacaatggaaagaatgtcttggaaatttattgaacggaagtttttgcgattaatatacatgtacattataaatgttcatcatagcttggagatttaatccttagctaaatgcattcatttgtgctggccagttcaattgaactaatagtaaggcgtagatcaactgtagcacaaaaaacccgggttgaaacgtaactttcacaaagacagaaaaaagggatatacatgtataaaaaagaagaagaattaagttgtttatgcttataaattgacgtgtactcagtcgggaccaaataaatagcccaaggctatccatggttcttcaatgaatggcgagttcaccataacatctaggtgtactaatatattaagcgtc------A-TGC----CC---AAA----T-C-CG-TT-TTC-GGCAAGGA-----GTGGGA-AG---G---GGGT-----TTGAA----TCTCACTA---TTTTGC
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TCATTATTTAACTGTTCACAAAAATCATTGGTTAGCGGGCCTTGGACAGTTTATACATCAGCAAGAGGATTGTCAATGGTCTTTAAAATACTCTGTCACGCTTATATGACGATTCTCGAGCCAGCAATATATTGGCGAGGCGATTTTTGCTTATGATAACTAGATATGTCAGAGGCTTGTCTAAGATAAGATAATTCTTGGGACATTTTTC
Unaligned ( gi|15 ): AACATCGTATCTGCGAAACCATTACAATGGACCTGCAGTGGCGACAGTATCAAGATATGTCTGCAACTTAGGGCGTTGGAGTTCATTAATGTACTGTTTACTAGAGAATAAAATGATTAGGGGCCTTGAAGTTTTAACACGTCATCAAGTAAGGTTATCAAATGTTTGTTATATT
Unaligned ( gi|21 ): TTGGAGTTCAATATGTAACTGTTCACAGAAATCATTGATTAGAGGCCTTGAACGTCTTAACATCATCAGGTCCTTTCGCGCCTGATATGACGATTTCGTCAAACCAGCAACAAATTTGGCGAGGCC
Unaligned ( gi|24 ): AGTTACATACAATCGTACTGCAACCATTACTTGCAATGGCACAGGGAAATCTCG
Unaligned ( gi|25 ): ACCTCACTATTTTGCACACACTCGGTCTTAAAAT
Unaligned ( gi|26 ): CTTAAGGTGTTTATCAAAGCTGTCTTA
Alignments
lowQualScore : 111 111 111 1 222222222222 11 111 11111111 111 77777777777777777777777777777777777777777777777777 666666666666666666666666666 2222222 222222222222222 222222 222 1 333333333333333333333333 111 2 55555555555555555555 111 1 33333 111 111111 1 11111 222222222 11111 111 11111 33333333333 1111 111111111111 444444444444444444
lowQualScore : 5 5 66 555 4 4 4 4 4 4 4 4 4 4 55 0 99999 3 3 3 3 33 77 44 3 77 3 555 3 3 111 3 2 3 333333333333 2 6666 2 888 3 6 555 2 3 3 44 3 7777 22 4 4 4 2 555 55 55 1 222 9999 88888888 5 5 5 5 5 5 5 5 4 0 5 77 6 5 0 77 4 111 6 5 0 0 44444444444444444444444444444444444444444444444444 1 6 3 6 1 6 6 6 888888888888888888888888888 1111111 6 99 999999999999999 6 99 6 8 333333 0 0 1 777 999 5 2 2 0 6 2 888888888888888888888888 77 111 6 0 0 11111111111111111111 4 111 3 00000 6 6 6 3 5 000 666666 5 1 5 5 5 33333 4 4 000000000 33333 4 66 66 555 2 4 4 8 4 4 4 55555 8 11111111111 3 7777 666 1111 7 3 3 3 3 2 777777777777 4 777777777777777777 8888 777
lowQualScore : . . .. ... . . . . . . . . . . .. . ..... . . . . .. .. .. . .. . ... . . ... . . . ............ . .... . ... . . ... . . . .. . .... .. . . . . ... .. .. . ... .... ........ . . . . . . . . . . . .. . . . .. . ... . . . . .................................................. . . . . . . . . ........................... ....... . .. ............... . .. . . ...... . . . ... ... . . . . . . ........................ .. ... . . . .................... . ... . ..... . . . . . ... ...... . . . . . ..... . . ......... ..... . .. .. ... . . . . . . . ..... . ........... . .... ... .... . . . . . . ............ . .................. .... ...
lowQualScore : 0 0 99 666 4 0 0 0 0 0 9 0 0 0 55 3 11111 6 6 6 6 88 99 66 3 99 5 333 3 3 555 1 3 1 555555555555 9 1111 9 555 1 2 444 9 1 1 22 1 7777 88 0 0 0 4 888 55 55 0 666 8888 11111111 0 0 0 0 0 0 0 0 4 9 7 99 6 7 1 11 0 666 6 0 1 2 99999999999999999999999999999999999999999999999999 0 6 0 7 0 7 7 7 555555555555555555555555555 7777777 7 22 888888888888888 7 22 7 0 000000 8 8 4 666 333 2 2 5 8 7 5 777777777777777777777777 77 777 7 0 3 55555555555555555555 2 777 3 00000 7 7 7 0 7 000 444444 7 4 7 0 0 55555 4 4 777777777 33333 4 11 11 000 1 0 0 0 0 0 0 55555 0 22222222222 6 7777 444 4444 3 6 6 6 6 1 333333333333 0 666666666666666666 5555 888
consensus : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TT----CAAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-CA-TTCAATTNAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACACAC-AA-GAC---------AG------GGGAAA-------AT-AAAAA--AA---------GAN-ANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCAT-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GTATAAAG-GT---AC-A-AGTCCGAACTA--------------TATTG---TTCATGC-AC-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTATNTCN---GN-A-TGC----TT---AAA----T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
Reference ( family-4731 ) : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TNAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TT----CAAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTNCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATGT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT-C--TTGTTTTGG-----TCAATTNAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACACAC-AA-GAC---------AG------GGGAAA-------AT-AAAAA--AA---------GAA-ATTT-AAG--TCGTCTATG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCAT--TTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ATT---GTATAAAG-GT---AC-A-AGTCCGAATTA--------------TATTG---TTCATGC-AC-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAGGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTACATNT---AT-A-TGC----TT---AAA----T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
gi|1 : TCATTGTGG-CATAGAA-ATACGC--A---G-ACTTC-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGC-GT-----ATGA-TG-T-A-CACGC-AATA-TTTATTTTATC--AT-AAT--GAAATTTTTA--AGAA-G-AGTG---AA-AATC-AAATACTGGTACATGTATAA-TT----CAAA-CA---A-TT-TTGTTTTAATCT-GCT-AATATCCATTC--AA-AA----TT--TCTAG-GAAA-TCATT-TTAATTCGACGAGATGA--TA--T--TCATTGCT--CTTAAATTCCA---TTTCAA--------C-AG-GGTTTTA-TTCAACCA-AT-TA-GAA-TTC-TTGAA----------------TCT--TGATCATTTGTTG--TAAAAATG-TT---AATCA---ACGCTTTT-A-AGATTTAA----TCCTA-AAC----GAA-------------------ATGCATGC-AT------TTGTTTTGGCCAATTCAACTTAACTAATAGTAGGGCG-TAGCATTAAATGTTGCAT-AAAAACCTCGGGCCAAAACCCCAACTTTCACACAC--A-GAC------------------------------AT-AAAAA--AAGGGGGGGGGGAG-GGTT--AG--TCGTCTGTG-ATTATAAATTGACGTG-TACTCAGTCGGGACTTAGTCTAAATAAATAGCCCAAGGCTACCCAT--------A-A-----------------AT-AA-----AG-G-TACA---TGT-AC-AGA---GCCCCAA--AT---ACTA-TGTTC-AAT----------------TGTTG---TTCATGC-ACT----TTCAA-A-ATTTTCAGTAT-TCTGACT------T-T---GAT------TTTCATTT-GA-AA-TA-TTTAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------C-CATTG----CTTC-AAGTC--TGAATTAA--TA--TGAAGA-T-AAAA-CAA-CTG-TCT-CATCATGT-GGTATTTCA---GA-A-TGC----TT---TAA----T-C-CG-TT-TTC-GGTCAGAA-----GTG----GTG-GT--TG----GG---------TAAATCT----CACTA---TTTTGC
gi|10 : cacatgtatgtgaaaattttgagatcgtcagtttatagtttatcaaagctgtcttaggagtatcttaagTTCACATGAACGGTGAGTTCACCAT-AAAATCTAA-AGTATAAAGTAT-AG-GCTCCCGAATAAAA-G-----C-A-AGTTCG--CT---------------TATTG---TTTAATC-ACATTTTTTTAA-A-ATTATCTGTATACTTGGCTTTTATCT-TCGTAAT------TTTAATTT-GA-AAACT-TTCAA-C--T--AGACTAAA-------GG----------------CGT------CTTC-AAGTC--TGAATTAA--TA--TGAAGATT-AAAA-CTG-TTG-TTT-CA-----TGGGTATTTCA---GA-A-TGC----AT---AAAT---T-C-CG-TTGCTC-AGCAAGGA-----G-G----GGG-GT--TA----GGA--------TGAATCT----CACTacacactcggtctttaaatgttatgcacatcaccaagaactgccccgaaactcccagttacatacaattgaaccattacctgcagggacgttggagttcattatgtaactgttcacagaaataattgattaggggtcttgaaaatatctaacatcatcaaggtaatcaagaggattagcaatggtc
gi|11 : ctT-AAAC-CAAT-TTGCAGAAAATCAGATTA-G-ATGTT--ATTTTTGCCAT------TGG-TACC-AACACGT-TACT-ATAATTT-ATC--AT-CAT--GAAA-TATTT-----A-G-AGTG---AACA-TC-ACA---------------AA-TTTTGCTAAA-CAT--C-TT-TT---TTAATTT-ATC-AATATCAAA-A--AATAA----TTC-CACA--AAAA-TCATT-AAAATTCAAACAGATAA--TA--C--TGATTCAT--TCAGAATTCcatgtatttttgcacacactcggtcttggaaatattatgcacatcaccaagaactgcccgaaactcccagtgtgtacatacaatcgactgcacatactgcagtggca
gi|12 : gttcataagaaatttccagtaagacatatcttaggacaatttttgagatcatcttaagattatcttcaggtgttttatcaaaggttatctgaaagaacactaaacttaaaaacctcttaaaacgtattttgacaaacaagtgTATCAAT-AGAAA-AA----AAA-TGTAG-GAAA-TCATT-TCAATTCGACAAGATGA--TA--T--TTGTTGTT--CTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTGATCA-AT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTGAATGAACTTG-TTTGCGAT-----------------TGTATAAATGCTCATC-AACGCTTGGAGAT-T--------------c
gi|14 : -A-TGC----CC---AAA----T-C-CG-TT-TTC-GGCAAGGA-----GTG----GGA-AG---G----GGG-T-----TTGAATCT----CACTA---TTTTGCtaatcctaaatgnnnnnnnnnnnnnnnnnnnnnnnnnccgtgccactgcagtatgtgcagtcgattgtatgtac
gi|16 : gTTGATC-AACGCTTGTAGATAT--------------AATC-TTC-ATTT------GTTATGG-------AGTTCGA-------TAGGGCG-CAGCATCAATTGTAGTAC-AAAATCT-CCGGCCAAAA-CTTAACTTTCACACAC-AAGGACTGAAAAAAAAG------GGGAAA-------AT-AAAAA--AA---------AGA-AATT-AAG--TTGTCTATG-ATTATAAATTacacattaatgcacattaccaagaactgccccgaaactcccagttatatanacattaccaagaactgccccgaaactcccagatacatatacaatcgtactgcaaccattaccccagcacata
gi|17 : ttca---AA-A-TCCAAATA------------TGA-TT----CAAA-CACTTA-TT-TT---TATATCT-ATT-AATATCAAT-A--AA-AA----TTTCTCTAGCGAAA-TCATT-T-AATTCGACAAGATGA--TA--T--GCTTTGCTTCTTTAAATTC------CTAAA--------C-AGTGGTTCCA-TTCGATCA-TT-CA-GAT-TTCTTTTAACCA-GAAA-
gi|18 : ga---G-GCTTT-GAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTATC--AAATTTGCCGT-----AAGT-TGCT-A-CACGG-TATG-ATAATT--ATC--AT-TAT--GAAAACCTTT--TGAG-G-AGTGA--AA-A-TC-AAATA------------TAA-TT----TAAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AA-A
gi|19 : A-TT----TAAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AA-AA----
gi|19 : ATAAAA-AGGGC-GTTT--TGGAGGTTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-CT-TATAAATCTTCATC-AACGCTTCAA----------------------CA--------------GT----------TCAATTGAATTAATAGTAGGGCgggcgttttggaggtttgttgaatggaaatgtttgcgattaatatacatatacttataaatcttcatcaacgcttcaacagttcaattgaattaatagtagggctt
gi|2 : atttaaacaatttttaaatctattaatgtcaTCATTGTGA--ATAGAA-ATACACCAA---G-ACTTT-AAACATA-T-TTCCAG-AA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGAATGCT-A-CACGC-TATG-ATAATT--GCC--AT-AATTTAAAATTATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TT----CAAA-CA---A-TTCTT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--A-TGCATTCTTGGGTTAAAA--------TAAG-AGGTCCA-GTTGTTCC-TT-CA-GAA-TTC-TTGAACCCTGAAACAGGGCGGCCTTGTGGACAAGTGGGAAAT-GAAATG-TTTGC-ACTAACTATACATAT-A-ATGTATAAATGTTCATC-AACGCCTGGAGA--T--------------ATGCATTCAATTTGCA-TTGTTTTGA-----TCAATCAA---AATA-TA-GGCGTTAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAA-CCTAAC-TTCACTTAT------T---------AG------GGGAAA-------ATGAAAAA--AA---------GAT-ATTT-AAAGTTCGTCTACGACTCATAAATTGACGTATTACTCAGTCGGAA------CC-AATAAATAGCCCAAGACTACCCAT--TTTCTTA-A-GAAAGGTGA-TTCA-CATAAACATCTAGCA-TACAT--TGTAAC-ATT---GTATAAAG-GT---AC-ACAGCCCAAACTA--------------T-TTA---TTCATGCAAC-----TTCAA-ACATTTTCTGTAT-CCTGGC-TGAATCT-T---AAT------TTTCATTTGGG-AA-TTCTTCAA-C--TTGCGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC------TC-AAGTTTGTGAATTAT--TA--TGAGAA-T-AAAA-CAGCCTGTTCT-CA-----T-GGTACATGT---AT-ATTGC----TT---AAA----T-C-CGATT-TTC-GGCAAGGA------TA----GGG-GGTCTG----GGGTT-GGTTTTGAATAT----CACTA---TTTTGCtt
gi|20 : TCATTGTGA-CAAAGAA-CTACGC--A---G-AGTCT-AAGC-CA-T-TTTCAGGAG-TCAGAT-A-G-TTGTC--ATTTTTATC-C-----ATGA-TGCG-A-CACTT-TATG-----------------AAT--GAAAATATTT----AA-G-AGTGA--AA-A-TC-AAAT---------------A-TT----TAAA-CA---A-TC-TT---TCAATTT-ATcacaaccactctgtcttttgaaatatattgtacatcaccaagaactgccccgaaactcccagttacattacaatcgtactgcaaccattttacctgcagtgac
gi|22 : gGA-CATAGAA-ATATGC--A---G-ACTTT-AAAC-TA-T-TTCCAGAAA-T-----------------ACCTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AC-AAT--GAAAATATTT-----------------A-A-TC-TAATA------------TAA-TT----CAAA-c
gi|23 : AAAATCAG-GGA-ATTAAA-------A-CGTTC----CCTC-CA-TC--TGAATC--------------------A-CAT-CCA-TCT-TT-----T-GG--CATTTCAGA--A-TGC----TT---CAA----TCC-CG-TT-TTC-
gi|3 : ATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTTTAAAC-CA-T-TACCAGGAA-TAAGAT-ACGTTTCAC--ACATTTGCCGT-----ATGA-TGTTAA-AACGC-TATGAATAATT--ATCAAAT-AAT--GTAAATATTTAAAAAA-G-AGTGAGAAA-A-TC-AA--A------------TAA-TT-------A-TA---A--T-TT---CAAACCTCAAC-AACATTAAT-A--AA-Ataa
gi|3 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaT-TTCAA-CGCT--AGACTAGAATCAG-GGA-CTGAAA-------AACGTTCAATTCTCA-AAGTC--TGAAT-AA--TAGCCGAAGA-TTAAAA-GAG-CTG-TCT-CA-----T-CGTATTTCA---GA-A-TAC----TT---AAA----T-CATG-TT-TC---GCGAGGACGGAGGTG----TGG-GG--TG----GGT-G-GG--TTGAACCT----CACTAATCCTTTGCccctcctaaggctaagaaattgtcatgttatgatacaatttcaacgctagactagaatcagggactgaaaaacgttcaattctcaaagtctgaataatagccgaagattaaaagagctgtctcatcgtatttcagaatacttaaatcatgtttcgcgaggacggaggtgtggggtgggtgggttgaacctcactaatcctttgcacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|4 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaattgtaacataaaaatacgtactagacttttaaaccattaccaggaataagatacgtttcacacatttgccgtatgatgttaaaacgctatgaataattatcaaataatgtaaatatttaaaaaagagtgagaaaatcaaataattataatttcaaacctcaacaacattaataaaaccctcctaaggctaagaaattgtcatgttatgatacaaTCATTGTGA-CATAGAA-ATACAC--A---G-ACTTT-AAAC-TA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--GCC--AT-AAT--TAAAATATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TT----CAAA-CA---A-TT-CT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--ATGCAATTCTT---GTTAAA--------T-AG-AGTTCCA-TTTGTTCC-TT-CA-GAA-TTC-TTGAACCCTGAAA-AGGGC-GCCT--TGGACAATTGTTGAATGGAAATG-TTTGCGACTAA-TATACATATAA-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTTGCAATTGTTTTGA-----TCAATTCAAGTAATAGTAGGGCG-TAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAA-CCTAACTTTCACTT-------AT---------AG------GGGAAA-------AT-AAAAA--AA---------GAT-ATTTAAAG--TCGTCTACG-CTCATAAATTGACGTA-TACTCAGTCGGAA------CCAAATAAATAGCCCAAGACTACCCATTGTTCTTCA-ATGAAAGGTGAGTTCA-CAT-AACATCTAG-A-TACA---TGT-AC-ATT---GTATAAAG-GT---AC-ACAGCCCAAACTA--------------TATTA---TTCATGC-AC-----TTCAACA-ATTTTCTGTAT-CCTGGCTTGAATCT-T---AAT------TTTCATTT-GG-AA-TT-TTCAA-C--T--GGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTT--TGAATTAT--TA--TGAGAA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTACATGT---AT-A-TGC----TT---AAA----T-C-CG-TT-TTC-GGCAAGGA-----GTA----GGG-GGT-TG----GGGTT-GG--TTGAATAT----CACTA---TTTTGCacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|5 : CGT-----ATGA-TGTT-A-CACGC-TATG-TTAATT--ATC--AT-TAT--TAAAATATTT--CGAA-G-AGTG---AA-AATC-AAATA------------TAA-TT----CAAA-C---------CT---TAAATCT-ATT-AATATTAAG-A--AA-AAAAAATT---CTAG-GAAA-TCATT-TTAATTCCACAAGATGA--TA--T--TCATTGCT--TTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTTATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTAAAT-GAAATATTTTGCGATTAA-TATACATGT-ACATGTATAAATGTTCATCTAACCCT---AAAC-TAA------------ATACACTC-AT------TTGTTTTGGACAGTTCAATTGAACTAATGATAGGATG-TAGCATCAACTGTAGTAC-AAAAATT-CTGGCCAAAA-CCTAATTTTCACACACAAA-GACAA-------AG------GGGAAA-------AT-AAAAA--AA---------GAAGAATT-AAG--TTGTCTATG-CTTATAAATTGACGTG-TATTCAATCGGGA------CCAAA-------------------------TCTTCA-TTGGACGGCGAGTTTGCCAT-AACATTTA--------------------T---GTATAAGG-GT---AC-AGAGTCTCAATTAAAATCAAGTTCAATTATTG---TTCATGCAAT-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTTAATCT-T---AAT------TTTCATTT-GA-AA-CT-TTCAA-C--C--AGACCAAAATCAG-GGG-ATGAAA-------A-CGTTT----ATTC-AAGTC--TAAATTAA--TA--TGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTATTTCA---GA-A-TGC----TTTTAAAA----T-C-CG-TT-TTC-TGCAAGGA-----G-G----GAG-GG--AG----G----------TGAATCT----CATTA---TTTTGC
gi|6 : TCATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTT-TAAC-CA-T-TTCCAGGAA-TAAGAT-A-G-ATCAC--ACTTT-GCCGT-----ATGA-TGTT-A-AACGC-TATG-ATAATT--ATC--AT-AAT--GGAAATATCT--AGAA-G-AGTG---AA-A----A---------------------T----CAAA-TA---A-TTATT---TAAATCT-ATA-ATTTTCATT-T--GA-TA----CTT-TCCAA-GCAG-AC----TGAAATCGGCGGGATGA--AACGT--TCATTacatactgggtcttgaaatattatgcacatcactaggaactgccccgaaattcccagttacatacaatcg
gi|6 : TTAAATCTAT---AAT------TTTCATTT-GATAC-TT-TCCAA-G--C--AGACTGAAATCGGCGGG-ATGAAA---------CGTTC----ATTC-AAGTC--TGAATTAA--TA--GGAAGA-T-AAAAGAAG-CTG-TCT-CATG---T-GGTATTTCC---AGAA-TGC----TT----AA----T-C-CG-TT-TTT-GGTGAGGA-----GGGAGGTGGG-GG--TGGGT-GGG-TGGG--TTGAACCT----CACTA---TTCTGCcaagtctgaattaataggaagataaaagaagctgtctcatgtggtatttccagaatgcttaatccgtttttggtgaggagggaggtgggggtgggtgggtgggttgaacctcactattctgcacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : tcattgtaacataaaaatacgtactagacttttaaccatttccaggaataagatagatcacactttgccgtatgatgttaaacgctatgataattatcataatggaaatatctagaagagtgaaaatcaaataattatATT--AT---AT-AAT--GAAA-TATTT--AGAAAG-AGTG---AA-AATC-AAATAATCCA-------TAACTT----CAAA-CA---A-TT-CT---TAAATCT--TT-Aacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : CTTAAATCT-T---TATCCATGCTTCCATTT-GATAC-TC-TTCAAAC--TC-AGACTAAAATCAG-AGGTATGAAACCAAATCA-CGTTC----ATTCCAAGTC--TGAATTTACCTAG-CGAAGA-T-AAAA-GAG-CTG-TCTTCA-----TTGGTAT-TTC---AG-A-TGC----TT---AAA----TTC-CG-TT-TTC-GGCGAGGC-----GTG----GAGTGG--TGGCGTGGG-T-GGGCTTGAACCTTTACCATAA---TTTTGCtccatgcttccatttgatactcttcaaactcagactaaaatcagaggtatgaaaccaaatcacgttcattccaagtctgaatttacctagcgaagataaaagagctgtcttcattggtatttcagatgcttaaattccgttttcggcgaggcgtggagtggtggcgtgggtgggcttgaacctttaccataattttgcacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : attatataatgaaatatttagaaagagtgaaaatcaaataatccataacttcaaacaattAAATCT-AAT-ACTATCAAT-A--AA-AA----TGT-TGTAG-GAAAATAATT-TTAATTCATTAAGATAA--CA--T--TCATTGCC--CTTAAATTCTT---TTTAGA--------C-AG-AGTTCCA-TTTGATCA-TTTCA-GAA-TCC-TTGAACAATGGAA-AGAAT-GTCT--TGGAAATTTATTGAACGGAAGTT-TTTGCGATTAA-TATACATGT-ACAT-TATAAATGTTCATC-ATAGCTTGGAGAT-TTAATCCTTAGCTAAATGCATTC-AT------TTGTGCTGGCCAGTTCAATTGAACTAATAGTAAGGCG-TAG-ATCAACTGTAGCACAAAAAACC-CGGGTTGAAA-CGTAACTTTCACA----AA-GAC---------AGAAAAAAGGGATATACATGTAT-AAAAAAGAA---------GAAGAATT-AAG--TTGTTTATG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTATCCATGGTTCTTCA-ATGAATGGCGAGTTCACCAT-AACATCTAG------G---TGT-ACTAAT---ATATTAAGCGTCGAAT-A-AAATCAAGTTT--------------TGTTAATTTTTATGC-ACT----TTCAA-A-ATGTTCTGTAT-CCTGGacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : GAA-T-AAAATCAA---G-TTT--------T-GTTA-ATTT---TT-A-TGCACTTTC---AAAATGTT-C-TG-TA-TCCTGGTAAGGA-----G------GGG-GG--------------GG--TTGAATCT----CACTA---TTTTtaaggaggggggggttgaatctcactatttt
gi|9 : aaatctaatactatcaataaaaatgttgtaggaaaataattttaattcattaagataacattcattgcccttaaattctttttagacagagttccatttgatcatttcagaatccttgaacaatggaaagaatgtcttggaaatttattgaacggaagtttttgcgattaatatacatgtacattataaatgttcatcatagcttggagatttaatccttagctaaatgcattcatttgtgctggccagttcaattgaactaatagtaaggcgtagatcaactgtagcacaaaaaacccgggttgaaacgtaactttcacaaagacagaaaaaagggatatacatgtataaaaaagaagaagaattaagttgtttatgcttataaattgacgtgtactcagtcgggaccaaataaatagcccaaggctatccatggttcttcaatgaatggcgagttcaccataacatctaggtgtactaatatattaagcgtcTCATTGTGATCAAAGAATATACGC--A---GCACTCG-AAGC-CA-TGTTCCAGGAA-TTA-AT-A-G-TTCTCCCACATTTGCCATTCATCATGA-TGCT-A-CAAGCCTATG-ATAATT--ATC--ATTAATT-GAAAATATTTT-AGAA-GCAGTG---AA-AATC-AAATA------------TGA-TT----CAAAACA---AATT-TT---TATATCT-ATTTAATATCAAT-A--AA-AA----TTT-TCTAG-G-AA-TCATTATTAATTCGACAAGATGATTTA--TGCTC-TTGCT---TTAAATTCTT---CTAAAAAACACGCGC-GG-CTTCCCATTTCGATCATTT-CACGAATTTC-TTTAACCATGAAA-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTATTTAACTGTTCACAAAAATCATTGGTTAGCGGGCCTTGGACAGTTTATACATCAGCAAGAGGATTGTCAATGGTCTTTAAAATACTCTGTCACGCTTATATGACGATTCTCGAGCCAGCAATATATTGGCGAGGCGATTTTTGCTTATGATAACTAGATATGTCAGAGGCTTGTCTAAGATAAGATAATTCTTGGGACATTTTTC
Unaligned ( gi|15 ): AACATCGTATCTGCGAAACCATTACAATGGACCTGCAGTGGCGACAGTATCAAGATATGTCTGCAACTTAGGGCGTTGGAGTTCATTAATGTACTGTTTACTAGAGAATAAAATGATTAGGGGCCTTGAAGTTTTAACACGTCATCAAGTAAGGTTATCAAATGTTTGTTATATT
Unaligned ( gi|21 ): TTGGAGTTCAATATGTAACTGTTCACAGAAATCATTGATTAGAGGCCTTGAACGTCTTAACATCATCAGGTCCTTTCGCGCCTGATATGACGATTTCGTCAAACCAGCAACAAATTTGGCGAGGCC
Unaligned ( gi|24 ): AGTTACATACAATCGTACTGCAACCATTACTTGCAATGGCACAGGGAAATCTCG
Unaligned ( gi|25 ): ACCTCACTATTTTGCACACACTCGGTCTTAAAAT
Unaligned ( gi|26 ): CTTAAGGTGTTTATCAAAGCTGTCTTA
Alignments
lowQualScore : 111 111 111 1 222222222222 11111111 111 111111 11111111 111 66666666666666666666666666666666666666666666666666 666666666666666666666666666 2222222 444444444 111 11 222222 333333333333333333333333 111111 555555555555555555555555555 111 1 22222 111 111111 1 11111 222222222 11111 111 11111 111111111111 333333333333333333
lowQualScore : 5 5 66 555 4 4 4 4 4 4 5 4 4 4 55 0 99999 3 3 3 3 33 77 44 3 77 3 111 3 3 111 3 2 3 333333333333 2 6666 2 888 3 6 555 2 3 3 44 77777777 4 0 4 4 2 888 55 55 333 444444 66666666 4 4 4 4 4 4 4 4 4 4 4 0 5 77 6 5 0 5 1 2 111 6 5 0 1 0 44444444444444444444444444444444444444444444444444 33 44 3 6 1 6 6 6 444444444444444444444444444 1111111 6 99 000000000 1 1 6 99 0 6 8 6 111 5 11 3 777777 999 5 6 88 6 2 666666666666666666666666 555555 222222222222222222222222222 4 111 3 33333 6 6 6 6 6 5 000 666666 5 1 5 5 5 33333 4 4 000000000 33333 4 66 66 555 4 4 4 4 4 4 77777 8 1 4 1 5 4 7777 4 8 4 4 4 1 111111111111 4 777777777777777777 8888 777
lowQualScore : . . .. ... . . . . . . . . . . .. . ..... . . . . .. .. .. . .. . ... . . ... . . . ............ . .... . ... . . ... . . . .. ........ . . . . . ... .. .. ... ...... ........ . . . . . . . . . . . . . .. . . . . . . ... . . . . . .................................................. .. .. . . . . . . ........................... ....... . .. ......... . . . .. . . . . ... . .. . ...... ... . . .. . . ........................ ...... ........................... . ... . ..... . . . . . . ... ...... . . . . . ..... . . ......... ..... . .. .. ... . . . . . . ..... . . . . . . .... . . . . . . ............ . .................. .... ...
lowQualScore : 0 0 99 666 4 0 0 0 0 0 7 0 0 0 55 3 11111 6 6 6 6 88 99 66 3 99 5 222 3 3 555 1 3 1 555555555555 9 1111 9 555 1 2 444 9 1 1 22 99999999 0 7 0 0 2 222 55 55 666 666666 11111111 4 4 4 4 4 4 4 4 4 4 4 4 7 99 6 7 1 7 4 4 666 6 0 1 4 2 99999999999999999999999999999999999999999999999999 11 44 0 7 0 7 7 7 555555555555555555555555555 7777777 7 22 000000000 0 0 7 22 7 7 0 0 888 0 44 2 888888 333 2 7 33 7 5 222222222222222222222222 888888 333333333333333333333333333 2 777 3 33333 7 7 7 7 6 7 000 444444 7 4 7 0 0 55555 4 4 777777777 33333 4 11 11 000 4 4 4 4 4 4 22222 9 0 4 0 3 0 9999 0 0 0 0 0 7 555555555555 0 666666666666666666 5555 888
consensus : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TTC----AAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--G-TTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAACCT-AACTTTCACACAC-AA-GAC---------AG------GGGAAA-------AT-AAAAA--AAGA--------AGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGACCAAAT--AAATAGCCCAAGACTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GTATAAAG-GT---ACA-A-GTCCAAACTA--------------TATTG---TTCATGC-AC-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTATTT-CAGAA-TGCTT---AAA-T-C-CG-TT-TTCGGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
Reference ( family-4731 ) : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TTC----AAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--A-TTCAATTNAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAACCT-AACTTTCACACAC-AA-GAC---------AG------GGGAAA-------AT-AAAAA--AAG---------ANANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGACCAAAT--AAATAGCCCAAGGCTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GTATAAAG-GT---ACA-A-GTCCGAACTA--------------TATTG---TTCATGC-AC-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTATNT-CNGNA-TGCTT---AAA-T-C-CG-TT-TTCGGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
gi|1 : TCATTGTGG-CATAGAA-ATACGC--A---G-ACTTC-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGC-GT-----ATGA-TG-T-A-CACGC-AATA-TTTATTTTATC--AT-AAT--GAAATTTTTA--AGAA-G-AGTG---AA-AATC-AAATACTGGTACATGTATAA-TTC----AAA-CA---A-TT-TTGTTTTAATCT-GCT-AATATCCATTC--AAAA----TT--TCTAG-GAAA-TCATT-TTAATTCGACGAGATGA--TA--T--TCATTGCT--CTTAAATTCCA---TTTCAA--------C-AG-GGTTTTA-TTCAAC-CA-AT-TA-GAA-TTC-TTGAA----------------TCT--TGATCATTTGTTG--TAAAAATG-TT---AATCAA-CG--CTTTT-A-AGATTTAA----TCCTA-AACG------AA-----------------ATGCATGC-ATTT------GTTTTGG-CCAA-TTCAACTTAACTAATAGTAGGGCG-TAGCATTAAATGTTGCAT-AAAAACCTCGGGCCAAAACCCCAACTTTCACACAC-A--GAC---------A---------------------T-AAAAA--AAGGGGGGGGGGAGGGTT-A-G--TCGTCTGTG-ATTATAAATTGACGTG-TACTCAGTCGGGACTTAGTCTAAATA----AA---TAGCC----------CA-A-----GGCTA---C-CCAT-AA-ATAAAG-G-TACA---TGT-AC-AGA---GCCCCAAA--T---ACT-ATGTTCAA--T---------------TGTTG---TTCATGC-AC-----TTTCAA-A-ATTTTCAGTAT-TCTGACTT-------T---GAT------TTTCATTT-GA-AA-TA-TTTAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------C-CATTG----CTTC-AAGTC--TGAATTAA--TA--TGAAGA-T-AAAA-CAA-CTG-TCT-CATCATGT-GGTATTT-CAGAA-TGCTT---TAA-T-C-CG-TT-TTCGGTCAGAA-----GTG----GTG-GT--TG----GG---------TAAATCT----CACTA---TTTTGC
gi|10 : cacatgtatgtgaaaattttgagatcgtcagtttatagtttatcaaagctgtcttaggagtatcttaagTTCACATGAACGGTGAGTTCACCAT-AAAATCTAA-AGTATAAAGTAT-AG-GCTCCCGAATAAAA-G-----CA-A-GTTCG--CT---------------TATTG---TTTAATC-ACATTTTTT-TAA-A-ATTATCTGTATACTTGGCTTTTATCT-TCGTAAT------TTTAATTT-GA-AAACT-TTCAA-C--T--AGACTAAA-------GG----------------CGT------CTTC-AAGTC--TGAATTAA--TA--TGAAGATT-AAAA-CTG-TTG-TTT-CA-----TGGGTATTT-CAGAA-TGCAT---AAATT-C-CG-TTGCTCAGCAAGGA-----G-G----GGG-GT--TA----GGA--------TGAATCT----CACTacacactcggtctttaaatgttatgcacatcaccaagaactgccccgaaactcccagttacatacaattgaaccattacctgcagggacgttggagttcattatgtaactgttcacagaaataattgattaggggtcttgaaaatatctaacatcatcaaggtaatcaagaggattagcaatggtc
gi|11 : ctT-AAAC-CAAT-TTGCAGAAAATCAGATTA-G-ATGTT--ATTTTTGCCAT------TGG-TACC-AACACGT-TACT-ATAATTT-ATC--AT-CAT--GAAA-TATTT--AGA-----GTG---AACA-TC-ACA---------------AA-TTTTGCTAAA-CAT--C-TT-TT---TTAATTT-ATC-AATATCAA-----AAAA----T----------------------AATTCCACAAAA------A--T---CATTA-------AAATTC--------AAA--------C-AG-A-TAATA-CT-GATTCA-TT-CA-GAA-TTC-catgtatttttgcacacactcggtcttggaaatattatgcacatcaccaagaactgcccgaaactcccagtgtgtacatacaatcgactgcacatactgcagtggca
gi|12 : gttcataagaaatttccagtaagacatatcttaggacaatttttgagatcatcttaagattatcttcaggtgttttatcaaaggttatctgaaagaacactaaacttaaaaacctcttaaaacgtattttgacaaacaagtgTATCAAT-AGAAAAA----AAA-TGTAG-GAAA-TCATT-TCAATTCGACAAGATGA--TA--T--TTGTTGTT--CTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTGAT-CA-AT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTGAATGAACTTG-TTTGCGAT-----------------TGTATAAATGCTCATC-AACGCTTGGAGAT-T--------------c
gi|14 : A-TGCCC---AAA-T-C-CG-TT-TTCGGCAAGGA-----GTG----GGA-AG---G----GGG-T-----TTGAATCT----CACTA---TTTTGCtaatcctaaatgnnnnnnnnnnnnnnnnnnnnnnnnnccgtgccactgcagtatgtgcagtcgattgtatgtac
gi|16 : gTTGATC-AACGCTTGTAGATAT--------------AATC-TTC-ATTT------GTTATGG-A--G-TTCGAT------------AGGGCG-CAGCATCAATTGTAGTAC-AAAATCT-CCGGCCAAAACTT-AACTTTCACACAC-AAGGACTGAAAAAAAAG------GGGAAA-------AT-AAAAA--AAA---------GAAATT-AAG--TTGTCTATG-ATTATAAATTacacattaatgcacattaccaagaactgccccgaaactcccagttatatanacattaccaagaactgccccgaaactcccagatacatatacaatcgtactgcaaccattaccccagcacata
gi|17 : ttca---AA-A-TCCAAATA------------TGA-TTC----AAA-CACTTA-TT-TT---TATATCT-ATT-AATATCAAT-A--AAAA----TTTCTCTAGCGAAA-TCATT-T-AATTCGACAAGATGA--TA--T--GCTTTGCTTCTTTAAATTC------CTAAA--------C-AGTGGTTCCA-TTCGAT-CA-TT-CA-GAT-TTCTTTTAACCA-GAAA-
gi|18 : ga---G-GCTTT-GAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTATC--AAATTTGCCGT-----AAGT-TGCT-A-CACGG-TATG-ATAATT--ATC--AT-TAT--GAAAACCTTT--TGAG-G-AGTGA--AA-A-TC-AAATA------------TAA-TTT----AAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AAA
gi|19 : A-TTT----AAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AAAA----
gi|19 : ATAAAA-AGGGC-GTTT--TGGAGGTTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-CT-TATAAATCTTCATC-AACGCTTCAA----------------------CA--------------GTT------------CAATTGAATTAATAGTAGGGCgggcgttttggaggtttgttgaatggaaatgtttgcgattaatatacatatacttataaatcttcatcaacgcttcaacagttcaattgaattaatagtagggctt
gi|2 : atttaaacaatttttaaatctattaatgtcaTCATTGTGA--ATAGAA-ATACACCAA---G-ACTTT-AAACATA-T-TTCCAG-AA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGAATGCT-A-CACGC-TATG-ATAATT--GCC--AT-AATTTAAAATTATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TTC----AAA-CA---A-TTCTT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--A-TGCATTCTTGGGTTAAAA--------TAAG-AGGTCCA-GTTGTT-CC-TT-CA-GAA-TTC-TTGAACCCTGAAACAGGGCGGCCTTGTGGACAAGTGGGAAAT-GAAATG-TTTGC-ACTAACTATACATAT-A-ATGTATAAATGTTCATC-AACGCCTGGAGA--T--------------ATGCATTCAATTTGCA-TTGTTTTGA-------TCAATCAA---AATA-TA-GGCGTTAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAACCT-AAC-TTCACTTAT------T---------AG------GGGAAA-------ATGAAAAA--AAG---------ATATTT-AAAGTTCGTCTACGACTCATAAATTGACGTATTACTCAGTCGGAACC-AAT--AAATAGCCCAAGACTACCCA-T-TTTCTT-A-A-GAAAGGTGA-TTCA-CATAAACATCTAGCA-TACAT--TGTAAC-ATT---GTATAAAG-GT---ACACA-GCCCAAACTA--------------T-TTA---TTCATGCAAC-----TT-CAA-ACATTTTCTGTAT-CCTGGC-TGAATCT-T---AAT------TTTCATTTGGG-AA-TTCTTCAA-C--TTGCGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC------TC-AAGTTTGTGAATTAT--TA--TGAGAA-T-AAAA-CAGCCTGTTCT-CA-----T-GGTACAT-GTATATTGCTT---AAA-T-C-CGATT-TTCGGCAAGGA------TA----GGG-GGTCTG----GGGTT-GGTTTTGAATAT----CACTA---TTTTGCtt
gi|20 : TCATTGTGA-CAAAGAA-CTACGC--A---G-AGTCT-AAGC-CA-T-TTTCAGGAG-TCAGAT-A-G-TTGTC--ATTTTTATC-C-----ATGA-TGCG-A-CACTT-TATG-----------------AAT--GAAAATATTT----AA-G-AGTGA--AA-A-TC-AAAT---------------A-TTT----AAA-CA---A-TC-TT---TCAATTT-ATcacaaccactctgtcttttgaaatatattgtacatcaccaagaactgccccgaaactcccagttacattacaatcgtactgcaaccattttacctgcagtgac
gi|22 : gGA-CATAGAA-ATATGC--A---G-ACTTT-AAAC-TA-T-TTCCAGAAA-T-----------------ACCTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AC-AAT--GAAAATATTT-----------------A-A-TC-TAATA------------TAA-TTC----AAA-c
gi|23 : AAAATCAG-GGA-ATTAAA-------A-CGTTC----CCTC-CA-TC--TGAATC--------------------A-CAT-CCA-TCT-TT-----T-GGCATTT-CAGAA-TGCTT---CAA-TCC-CG-TT-TTC
gi|3 : ATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTTTAAAC-CA-T-TACCAGGAA-TAAGAT-ACGTTTCAC--ACATTTGCCGT-----ATGA-TGTTAA-AACGC-TATGAATAATT--ATCAAAT-AAT--GTAAATATTTAAAAAA-G-AGTGAGAAA-A-TC-AA--A------------TAA-TT-------A-TA---A--T-TT---CAAACCTCAAC-AACATTAAT-A--AAAtaa
gi|3 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaT-TTCAA-CGCT--AGACTAGAATCAG-GGA-CTGAAA-------AACGTTCAATTCTCA-AAGTC--TGAAT-AA--TAGCCGAAGA-TTAAAA-GAG-CTG-TCT-CA-----T-CGTATTT-CAGAA-TACTT---AAA-T-CATG-TT-TC--GCGAGGACGGAGGTG----TGG-GG--TG----GGT-G-GG--TTGAACCT----CACTAATCCTTTGCccctcctaaggctaagaaattgtcatgttatgatacaatttcaacgctagactagaatcagggactgaaaaacgttcaattctcaaagtctgaataatagccgaagattaaaagagctgtctcatcgtatttcagaatacttaaatcatgtttcgcgaggacggaggtgtggggtgggtgggttgaacctcactaatcctttgcacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|4 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaattgtaacataaaaatacgtactagacttttaaaccattaccaggaataagatacgtttcacacatttgccgtatgatgttaaaacgctatgaataattatcaaataatgtaaatatttaaaaaagagtgagaaaatcaaataattataatttcaaacctcaacaacattaataaaaccctcctaaggctaagaaattgtcatgttatgatacaaTCATTGTGA-CATAGAA-ATACAC--A---G-ACTTT-AAAC-TA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--GCC--AT-AAT--TAAAATATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TTC----AAA-CA---A-TT-CT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--ATGCAATTCTT---GTTAAA--------T-AG-AGTTCCA-TTTGTT-CC-TT-CA-GAA-TTC-TTGAACCCTGAAA-AGGGC-GCCT--TGGACAATTGTTGAATGGAAATG-TTTGCGACTAA-TATACATATAA-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTTGCAATTGTTTTGA-------TCAATTCAAGTAATAGTAGGGCG-TAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAACCT-AACTTTCACTT-------AT---------AG------GGGAAA-------AT-AAAAA--AAG---------ATATTTAAAG--TCGTCTACG-CTCATAAATTGACGTA-TACTCAGTCGGAACCAAAT--AAATAGCCCAAGACTACCCATT-GTTCTTCA-ATGAAAGGTGAGTTCA-CAT-AACATCTAG-A-TACA---TGT-AC-ATT---GTATAAAG-GT---ACACA-GCCCAAACTA--------------TATTA---TTCATGC-AC-----TT-CAACA-ATTTTCTGTAT-CCTGGCTTGAATCT-T---AAT------TTTCATTT-GG-AA-TT-TTCAA-C--T--GGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTT--TGAATTAT--TA--TGAGAA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTACAT-GTATA-TGCTT---AAA-T-C-CG-TT-TTCGGCAAGGA-----GTA----GGG-GGT-TG----GGGTT-GG--TTGAATAT----CACTA---TTTTGCacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|5 : CGT-----ATGA-TGTT-A-CACGC-TATG-TTAATT--ATC--AT-TAT--TAAAATATTT--CGAA-G-AGTG---AA-AATC-AAATA------------TAA-TTC----AAA-C---------CT---TAAATCT-ATT-AATATTAAG-A--AAAAAAAATT---CTAG-GAAA-TCATT-TTAATTCCACAAGATGA--TA--T--TCATTGCT--TTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTTAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTAAAT-GAAATATTTTGCGATTAA-TATACATGT-ACATGTATAAATGTTCATCTAACCCT---AAAC-TAA------------ATACACTC-A--T----TTGTTTTGGAC--AGTTCAATTGAACTAATGATAGGATG-TAGCATCAACTGTAGTAC-AAAAATT-CTGGCCAAAACCT-AATTTTCACACACAAA-GACAA-------AG------GGGAAA-------AT-AAAAA--AAGA--------AGAATT-AAG--TTGTCTATG-CTTATAAATTGACGTG-TATTCAATCGGGACCAAA----------------------------TCTTCA-TTGGACGGCGAGTTTGCCAT-AACATTTA--------------------T---GTATAAGG-GT---ACAGA-GTCTCAATTAAAATCAAGTTCAATTATTG---TTCATGCAAT-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTTAATCT-T---AAT------TTTCATTT-GA-AA-CT-TTCAA-C--C--AGACCAAAATCAG-GGG-ATGAAA-------A-CGTTT----ATTC-AAGTC--TAAATTAA--TA--TGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTATTT-CAGAA-TGCTTTTAAAA-T-C-CG-TT-TTCTGCAAGGA-----G-G----GAG-GG--AG----G----------TGAATCT----CATTA---TTTTGC
gi|6 : TCATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTT-TAAC-CA-T-TTCCAGGAA-TAAGAT-A-G-ATCAC--ACTTT-GCCGT-----ATGA-TGTT-A-AACGC-TATG-ATAATT--ATC--AT-AAT--GGAAATATCT--AGAA-G-AGTG---AA-A----A---------------------TC----AAA-TA---A-TTATT---TAAATCT-ATA-ATTTTCATT-T--GATA----CTT-TCCAA-GCAG-AC----TGAAATCGGCGGGATGA--AACGT--TCATTacatactgggtcttgaaatattatgcacatcactaggaactgccccgaaattcccagttacatacaatcg
gi|6 : TTAAATCTAT---AAT------TTTCATTT-GATAC-TT-TCCAA-G--C--AGACTGAAATCGGCGGG-ATGAAA---------CGTTC----ATTC-AAGTC--TGAATTAA--TA--GGAAGA-T-AAAAGAAG-CTG-TCT-CATG---T-GGTATTTCCAGAA-TGCTT----AA-T-C-CG-TT-TTTGGTGAGGA-----GGGAGGTGGG-GG--TGGGT-GGG-TGGG--TTGAACCT----CACTA---TTCTGCcaagtctgaattaataggaagataaaagaagctgtctcatgtggtatttccagaatgcttaatccgtttttggtgaggagggaggtgggggtgggtgggtgggttgaacctcactattctgcacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : tcattgtaacataaaaatacgtactagacttttaaccatttccaggaataagatagatcacactttgccgtatgatgttaaacgctatgataattatcataatggaaatatctagaagagtgaaaatcaaataattatATT--AT---AT-AAT--GAAA-TATTT--AGAAAG-AGTG---AA-AATC-AAATAATCCA-------TAACTTC----AAA-CA---A-TT-CT---TAAATCT--TT-Aacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : CTTAAATCT-T---TATCCATGCTTCCATTT-GATAC-TC-TTCAAAC--TC-AGACTAAAATCAG-AGGTATGAAACCAAATCA-CGTTC----ATTCCAAGTC--TGAATTTACCTAG-CGAAGA-T-AAAA-GAG-CTG-TCTTCA-----TTGGTATTT-CAG-A-TGCTT---AAA-TTC-CG-TT-TTCGGCGAGGC-----GTG----GAGTGG--TGGCGTGGG-T-GGGCTTGAACCTTTACCATAA---TTTTGCtccatgcttccatttgatactcttcaaactcagactaaaatcagaggtatgaaaccaaatcacgttcattccaagtctgaatttacctagcgaagataaaagagctgtcttcattggtatttcagatgcttaaattccgttttcggcgaggcgtggagtggtggcgtgggtgggcttgaacctttaccataattttgcacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : attatataatgaaatatttagaaagagtgaaaatcaaataatccataacttcaaacaattAAATCT-AAT-ACTATCAAT-A--AAAA----TGT-TGTAG-GAAAATAATT-TTAATTCATTAAGATAA--CA--T--TCATTGCC--CTTAAATTCTT---TTTAGA--------C-AG-AGTTCCA-TTTGAT-CA-TTTCA-GAA-TCC-TTGAACAATGGAA-AGAAT-GTCT--TGGAAATTTATTGAACGGAAGTT-TTTGCGATTAA-TATACATGT-ACAT-TATAAATGTTCATC-ATAGCTTGGAGAT-TTAATCCTTAGCTAAATGCATTC-A--T----TTGTGCTGG-CCAG-TTCAATTGAACTAATAGTAAGGCG-TAG-ATCAACTGTAGCACAAAAAACC-CGGGTTGAAACGT-AACTTTCACA----AA-GAC---------AGAAAAAAGGGATATACATGTAT-AAAAAAGAAGA--------AGAATT-AAG--TTGTTTATG-CTTATAAATTGACGTG-TACTCAGTCGGGACCAAAT--AAATAGCCCAAGGCTATCCA-TGGTTCTTCA-ATGAATGGCGAGTTCACCAT-AACATCTAG------G---TGT-ACTAAT---ATATTAAGCGTCGAATA-A-AATCAAGTTT--------------TGTTAATTTTTATGC-ACT----TT-CAA-A-ATGTTCTGTAT-CCTGGacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : -----GTA----AGG-AG--GG----GGG---GG--TTGAATCT----CACTA---TTTTtaaggaggggggggttgaatctcactatttt
gi|9 : aaatctaatactatcaataaaaatgttgtaggaaaataattttaattcattaagataacattcattgcccttaaattctttttagacagagttccatttgatcatttcagaatccttgaacaatggaaagaatgtcttggaaatttattgaacggaagtttttgcgattaatatacatgtacattataaatgttcatcatagcttggagatttaatccttagctaaatgcattcatttgtgctggccagttcaattgaactaatagtaaggcgtagatcaactgtagcacaaaaaacccgggttgaaacgtaactttcacaaagacagaaaaaagggatatacatgtataaaaaagaagaagaattaagttgtttatgcttataaattgacgtgtactcagtcgggaccaaataaatagcccaaggctatccatggttcttcaatgaatggcgagttcaccataacatctaggtgtactaatatattaagcgtcgaataaaatcaagttttgttaatttttatgcactttcaaaatgttctgtatcctgTCATTGTGATCAAAGAATATACGC--A---GCACTCG-AAGC-CA-TGTTCCAGGAA-TTA-AT-A-G-TTCTCCCACATTTGCCATTCATCATGA-TGCT-A-CAAGCCTATG-ATAATT--ATC--ATTAATT-GAAAATATTTT-AGAA-GCAGTG---AA-AATC-AAATA------------TGA-TTC----AAAACA---AATT-TT---TATATCT-ATTTAATATCAAT-A--AAAA----TTT-TCTAG-G-AA-TCATTATTAATTCGACAAGATGATTTA--TGCTC-TTGCT---TTAAATTCTT---CTAAAAAACACGCGC-GG-CTTCCCATTTCGAT-CATTT-CACGAATTTC-TTTAACCATGAAA-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTATTTAACTGTTCACAAAAATCATTGGTTAGCGGGCCTTGGACAGTTTATACATCAGCAAGAGGATTGTCAATGGTCTTTAAAATACTCTGTCACGCTTATATGACGATTCTCGAGCCAGCAATATATTGGCGAGGCGATTTTTGCTTATGATAACTAGATATGTCAGAGGCTTGTCTAAGATAAGATAATTCTTGGGACATTTTTC
Unaligned ( gi|15 ): AACATCGTATCTGCGAAACCATTACAATGGACCTGCAGTGGCGACAGTATCAAGATATGTCTGCAACTTAGGGCGTTGGAGTTCATTAATGTACTGTTTACTAGAGAATAAAATGATTAGGGGCCTTGAAGTTTTAACACGTCATCAAGTAAGGTTATCAAATGTTTGTTATATT
Unaligned ( gi|21 ): TTGGAGTTCAATATGTAACTGTTCACAGAAATCATTGATTAGAGGCCTTGAACGTCTTAACATCATCAGGTCCTTTCGCGCCTGATATGACGATTTCGTCAAACCAGCAACAAATTTGGCGAGGCC
Unaligned ( gi|24 ): AGTTACATACAATCGTACTGCAACCATTACTTGCAATGGCACAGGGAAATCTCG
Unaligned ( gi|25 ): ACCTCACTATTTTGCACACACTCGGTCTTAAAAT
Unaligned ( gi|26 ): CTTAAGGTGTTTATCAAAGCTGTCTTA
Alignments
lowQualScore : 111 111 111 1 222222222222 11 111 11111111 111 6666666666666666666666666666666666666666666666666 666666666666666666666666666 2222222 2222222222 2222222 222222 1 2222222222 1111111111111 2222222222 2222 111 1 22222 111 111111 1 11111 222222222 11111 111 11111 111111111111 444444444444444444
lowQualScore : 5 5 66 555 4 4 4 4 4 4 5 4 4 4 55 0 99999 3 3 3 3 33 77 44 3 77 3 555 3 3 111 3 2 3 333333333333 2 6666 2 888 3 6 555 2 3 3 44 3 7777 22 4 4 4 2 555 55 55 333 9999 88888888 5 5 5 5 5 5 5 5 4 0 5 77 6 5 0 5 1 2 111 6 5 0 1 0 2222222222222222222222222222222222222222222222222 33 44 3 6 1 6 6 6 444444444444444444444444444 1111111 99 9999999999 1 1 6 99 0 6 8 3333333 0 1 777777 2 6 9 2 2 0 6 2 8888888888 6 7777777777777 3 3333333333 6 11 5555 4 111 3 33333 6 6 6 6 6 5 000 666666 5 1 5 5 5 33333 4 4 000000000 33333 4 66 66 555 4 4 4 4 4 4 77777 8 4 4 8888 7 3 3 3 3 3 2 777777777777 4 777777777777777777 8888 777
lowQualScore : . . .. ... . . . . . . . . . . .. . ..... . . . . .. .. .. . .. . ... . . ... . . . ............ . .... . ... . . ... . . . .. . .... .. . . . . ... .. .. ... .... ........ . . . . . . . . . . . .. . . . . . . ... . . . . . ................................................. .. .. . . . . . . ........................... ....... .. .......... . . . .. . . . ....... . . ...... . . . . . . . . .......... . ............. . .......... . .. .... . ... . ..... . . . . . . ... ...... . . . . . ..... . . ......... ..... . .. .. ... . . . . . . ..... . . . .... . . . . . . . ............ . .................. .... ...
lowQualScore : 0 0 99 666 4 0 0 0 0 0 7 0 0 0 55 3 11111 6 6 6 6 88 99 66 3 99 5 333 3 3 555 1 3 1 555555555555 9 1111 9 555 1 2 444 9 1 1 22 1 7777 88 0 0 0 4 888 55 55 444 8888 11111111 0 0 0 0 0 0 0 0 4 4 7 99 6 7 1 7 4 4 666 6 0 1 4 2 4444444444444444444444444444444444444444444444444 11 44 0 7 0 7 7 7 555555555555555555555555555 7777777 22 3333333333 0 0 7 22 7 7 0 8888888 8 8 888888 5 7 3 2 5 8 7 5 0000000000 7 2222222222222 7 0000000000 7 00 7777 2 777 3 33333 7 7 7 7 6 7 000 444444 7 4 7 0 0 55555 4 4 777777777 33333 4 11 11 000 4 4 4 4 4 4 22222 9 0 0 5555 3 6 6 6 6 6 1 333333333333 0 666666666666666666 5555 888
consensus : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TT----CAAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAACCT-AACTTTCACACAC-AA-GAC---------AG------GGGAAA-------ATAAAAA--AAGA--------AGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGACC------AAATAAATAGCCCAAGGCTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GT----ATNAAG-GT---ACA-A-GTTCAAACT-TATTG---TTCATGC-AC-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
Reference ( family-4731 ) : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TT----CAAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAACCT-AACTTTCACACAC-AA-GAC---------AG------GGGAAA-------ATAAAAA--AAGA--------AGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGACC------AAATAAATAGCCCAAGACTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GT----ATAAAG-GT---ACA-A-GTCCAAACTATATTG---TTCATGC-AC-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
gi|1 : TCATTGTGG-CATAGAA-ATACGC--A---G-ACTTC-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGC-GT-----ATGA-TG-T-A-CACGC-AATA-TTTATTTTATC--AT-AAT--GAAATTTTTA--AGAA-G-AGTG---AA-AATC-AAATACTGGTACATGTATAA-TT----CAAA-CA---A-TT-TTGTTTTAATCT-GCT-AATATCCATTC--AA-AA----TT--TCTAG-GAAA-TCATT-TTAATTCGACGAGATGA--TA--T--TCATTGCT--CTTAAATTCCA---TTTCAA--------C-AG-GGTTTTA-TTCAACCA-AT-TA-GAA-TTC-TTGAA----------------TCT--TGATCATTTGTTG--TAAAAATG-TT---AATCAA-CG--CTTTT-A-AGATTTAA----TCCTA-AACG------AA-----------------ATGCATGC-ATTT------GTTTTGG-CCAATTCAACTTAACTAATAGTAGGGCG-TAGCATTAAATGTTGCAT-AAAAACCTCGGGCCAAAACCCCAACTTTCACACAC-A--GAC---------A---------------------TAAAAA--AAGGGGGGGGGGAGGGTT-A-G--TCGTCTGTG-ATTATAAATTGACGTG-TACTCAGTCGGGACTTAGTCTAAATAAATAGCCCAAGGCTACCC-------------ATAAA--------------T-AA-----AG-G-TACA---TGT-AC-AGA---GC----CCCAAA--T---ACT-ATGTTCAA--T-TGTTG---TTCATGC-AC-----TTTCAA-A-ATTTTCAGTAT-TCTGACTT-------T---GAT------TTTCATTT-GA-AA-TA-TTTAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------C-CATTG----CTTC-AAGTC--TGAATTAA--TA--TGAAGA-T-AAAA-CAA-CTG-TCT-CATCATGT-GGTAT-TT-CAGAATGCTT---TAA-T-C-CG-TT-TTC-GGTCAGAA-----GTG----GTG-GT--TG----GG---------TAAATCT----CACTA---TTTTGC
gi|10 : cacatgtatgtgaaaattttgagatcgtcagtttatagtttatcaaagctgtcttaggagtatcttaagTTCACATGAACGGTGAGTTCACCAT-AAAATCTAA-AGTATAAAGTAT-AG-GCTCCCGA----ATAAAA-G-----CA-A-GTTCG--CT-TATTG---TTTAATC-ACATTTTTT-TAA-A-ATTATCTGTATACTTGGCTTTTATCT-TCGTAAT------TTTAATTT-GA-AAACT-TTCAA-C--T--AGACTAAA-------GG----------------CGT------CTTC-AAGTC--TGAATTAA--TA--TGAAGATT-AAAA-CTG-TTG-TTT-CA-----TGGGTAT-TT-CAGAATGCAT---AAATT-C-CG-TTGCTC-AGCAAGGA-----G-G----GGG-GT--TA----GGA--------TGAATCT----CACTacacactcggtctttaaatgttatgcacatcaccaagaactgccccgaaactcccagttacatacaattgaaccattacctgcagggacgttggagttcattatgtaactgttcacagaaataattgattaggggtcttgaaaatatctaacatcatcaaggtaatcaagaggattagcaatggtc
gi|11 : ctT-AAAC-CAAT-TTGCAGAAAATCAGATTA-G-ATGTT--ATTTTTGCCAT------TGG-TACC-AACACGT-TACT-ATAATTT-ATC--AT-CAT--GAAA-TATTT-----A-G-AGTG---AACA-TC-ACA---------------AA-TTTTGCTAAA-CAT--C-TT-TT---TTAATTT-ATC-AATATCAAA-A--AATAA----TTC-CACA--AAAA-TCATT-AAAATTCAAACAGATAA--TA--C--TGATTcatgtatttttgcacacactcggtcttggaaatattatgcacatcaccaagaactgcccgaaactcccagtgtgtacatacaatcgactgcacatactgcagtggca
gi|12 : gttcataagaaatttccagtaagacatatcttaggacaatttttgagatcatcttaagattatcttcaggtgttttatcaaaggttatctgaaagaacactaaacttaaaaacctcttaaaacgtattttgacaaacaagtgTATCAAT-AGAAA-AA----AAA-TGTAG-GAAA-TCATT-TCAATTCGACAAGATGA--TA--T--TTGTTGTT--CTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTGATCA-AT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTGAATGAACTTG-TTTGCGAT-----------------TGTATAAATGCTCATC-AACGCTTGGAGAT-T--------------cattcagaattcc
gi|14 : ATGCCC---AAA-T-C-CG-TT-TTC-GGCAAGGA-----GTG----GGA-AG---G----GGG-T-----TTGAATCT----CACTA---TTTTGCtaatcctaaatgnnnnnnnnnnnnnnnnnnnnnnnnnccgtgccactgcagtatgtgcagtcgattgtatgtac
gi|16 : gTTGATC-AACGCTTGTAGATAT--------------AATC-TTC-ATTT------GTTATGG-A--GTTCGAT------------AGGGCG-CAGCATCAATTGTAGTAC-AAAATCT-CCGGCCAAAACTT-AACTTTCACACAC-AAGGACTGAAAAAAAAG------GGGAAA-------ATAAAAA--AA-A--------GAAATT-AAG--TTGTCTATG-ATTATAAATTacacattaatgcacattaccaagaactgccccgaaactcccagttatatanacattaccaagaactgccccgaaactcccagatacatatacaatcgtactgcaaccattaccccagcacata
gi|17 : ttca---AA-A-TCCAAATA------------TGA-TT----CAAA-CACTTA-TT-TT---TATATCT-ATT-AATATCAAT-A--AA-AA----TTTCTCTAGCGAAA-TCATT-T-AATTCGACAAGATGA--TA--T--GCTTTGCTTCTTTAAATTC------CTAAA--------C-AGTGGTTCCA-TTCGATCA-TT-CA-GAT-TTCTTTTAACCA-GAAA-
gi|18 : ga---G-GCTTT-GAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTATC--AAATTTGCCGT-----AAGT-TGCT-A-CACGG-TATG-ATAATT--ATC--AT-TAT--GAAAACCTTT--TGAG-G-AGTGA--AA-A-TC-AAATA------------TAA-TT----TAAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AA-A
gi|19 : A-TT----TAAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AA-AA----
gi|19 : ATAAAA-AGGGC-GTTT--TGGAGGTTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-CT-TATAAATCTTCATC-AACGCTTCAA----------------------CA--------------GTT-----------CAATTGAATTAATAGTAGGGCgggcgttttggaggtttgttgaatggaaatgtttgcgattaatatacatatacttataaatcttcatcaacgcttcaacagttcaattgaattaatagtagggctt
gi|2 : atttaaacaatttttaaatctattaatgtcaTCATTGTGA--ATAGAA-ATACACCAA---G-ACTTT-AAACATA-T-TTCCAG-AA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGAATGCT-A-CACGC-TATG-ATAATT--GCC--AT-AATTTAAAATTATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TT----CAAA-CA---A-TTCTT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--A-TGCATTCTTGGGTTAAAA--------TAAG-AGGTCCA-GTTGTTCC-TT-CA-GAA-TTC-TTGAACCCTGAAACAGGGCGGCCTTGTGGACAAGTGGGAAAT-GAAATG-TTTGC-ACTAACTATACATAT-A-ATGTATAAATGTTCATC-AACGCCTGGAGA--T--------------ATGCATTCAATTTGCA-TTGTTTTGA------TCAATCAA---AATA-TA-GGCGTTAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAACCT-AAC-TTCACTTAT------T---------AG------GGGAAA-------ATGAAAA--AAAG--------ATATTT-AAAGTTCGTCTACGACTCATAAATTGACGTATTACTCAGTCGGAACC-------AATAAATAGCCCAAGACTACCCA-T-TTTCTT-A-A-GAAAGGTGA-TTCA-CATAAACATCTAGCA-TACAT--TGTAAC-ATT---GT----ATAAAG-GT---ACACA-GCCCAAACTAT-TTA---TTCATGCAAC-----TT-CAA-ACATTTTCTGTAT-CCTGGC-TGAATCT-T---AAT------TTTCATTTGGG-AA-TTCTTCAA-C--TTGCGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC------TC-AAGTTTGTGAATTAT--TA--TGAGAA-T-AAAA-CAGCCTGTTCT-CA-----T-GGTACATG-TATATTGCTT---AAA-T-C-CGATT-TTC-GGCAAGGA------TA----GGG-GGTCTG----GGGTT-GGTTTTGAATAT----CACTA---TTTTGCtt
gi|20 : TCATTGTGA-CAAAGAA-CTACGC--A---G-AGTCT-AAGC-CA-T-TTTCAGGAG-TCAGAT-A-G-TTGTC--ATTTTTATC-C-----ATGA-TGCG-A-CACTT-TATG-----------------AAT--GAAAATATTT----AA-G-AGTGA--AA-A-TC-AAAT---------------A-TT----TAAA-CA---A-TC-TT---TCAATTT-ATcacaaccactctgtcttttgaaatatattgtacatcaccaagaactgccccgaaactcccagttacattacaatcgtactgcaaccattttacctgcagtgac
gi|22 : gGA-CATAGAA-ATATGC--A---G-ACTTT-AAAC-TA-T-TTCCAGAAA-T-----------------ACCTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AC-AAT--GAAAATATTT-----------------A-A-TC-TAATA------------TAA-TT----CAAA-c
gi|23 : AAAATCAG-GGA-ATTAAA-------A-CGTTC----CCTC-CA-TC--TGAATC--------------------A-CAT-CCA-TCT-TT-----T-GGCAT-TT-CAGAATGCTT---CAA-TCC-CG-TT-TTC-
gi|3 : ATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTTTAAAC-CA-T-TACCAGGAA-TAAGAT-ACGTTTCAC--ACATTTGCCGT-----ATGA-TGTTAA-AACGC-TATGAATAATT--ATCAAAT-AAT--GTAAATATTTAAAAAA-G-AGTGAGAAA-A-TC-AA--A------------TAA-TT-------A-TA---A--T-TT---CAAACCTCAAC-AACATTAAT-A--AA-Ataa
gi|3 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaT-TTCAA-CGCT--AGACTAGAATCAG-GGA-CTGAAA-------AACGTTCAATTCTCA-AAGTC--TGAAT-AA--TAGCCGAAGA-TTAAAA-GAG-CTG-TCT-CA-----T-CGTAT-TT-CAGAATACTT---AAA-T-CATG-TT-TC---GCGAGGACGGAGGTG----TGG-GG--TG----GGT-G-GG--TTGAACCT----CACTAATCCTTTGCccctcctaaggctaagaaattgtcatgttatgatacaatttcaacgctagactagaatcagggactgaaaaacgttcaattctcaaagtctgaataatagccgaagattaaaagagctgtctcatcgtatttcagaatacttaaatcatgtttcgcgaggacggaggtgtggggtgggtgggttgaacctcactaatcctttgcacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|4 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaattgtaacataaaaatacgtactagacttttaaaccattaccaggaataagatacgtttcacacatttgccgtatgatgttaaaacgctatgaataattatcaaataatgtaaatatttaaaaaagagtgagaaaatcaaataattataatttcaaacctcaacaacattaataaaaccctcctaaggctaagaaattgtcatgttatgatacaaTCATTGTGA-CATAGAA-ATACAC--A---G-ACTTT-AAAC-TA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--GCC--AT-AAT--TAAAATATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TT----CAAA-CA---A-TT-CT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--ATGCAATTCTT---GTTAAA--------T-AG-AGTTCCA-TTTGTTCC-TT-CA-GAA-TTC-TTGAACCCTGAAA-AGGGC-GCCT--TGGACAATTGTTGAATGGAAATG-TTTGCGACTAA-TATACATATAA-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTTGCAATTGTTTTGA------TCAATTCAAGTAATAGTAGGGCG-TAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAACCT-AACTTTCACTT-------AT---------AG------GGGAAA-------ATAAAAA--AAG---------ATATTTAAAG--TCGTCTACG-CTCATAAATTGACGTA-TACTCAGTCGGAACC------AAATAAATAGCCCAAGACTACCCATT-GTTCTTCA-ATGAAAGGTGAGTTCA-CAT-AACATCTAG-A-TACA---TGT-AC-ATT---GT----ATAAAG-GT---ACACA-GCCCAAACTATATTA---TTCATGC-AC-----TT-CAACA-ATTTTCTGTAT-CCTGGCTTGAATCT-T---AAT------TTTCATTT-GG-AA-TT-TTCAA-C--T--GGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTT--TGAATTAT--TA--TGAGAA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAC-AT-GTATATGCTT---AAA-T-C-CG-TT-TTC-GGCAAGGA-----GTA----GGG-GGT-TG----GGGTT-GG--TTGAATAT----CACTA---TTTTGCacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|5 : CGT-----ATGA-TGTT-A-CACGC-TATG-TTAATT--ATC--AT-TAT--TAAAATATTT--CGAA-G-AGTG---AA-AATC-AAATA------------TAA-TT----CAAA-C---------CT---TAAATCT-ATT-AATATTAAG-A--AA-AAAAAATT---CTAG-GAAA-TCATT-TTAATTCCACAAGATGA--TA--T--TCATTGCT--TTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTTATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTAAAT-GAAATATTTTGCGATTAA-TATACATGT-ACATGTATAAATGTTCATCTAACCCT---AAAC-TAA------------ATACACTC-A--T----TTGTTTTGGACA-GTTCAATTGAACTAATGATAGGATG-TAGCATCAACTGTAGTAC-AAAAATT-CTGGCCAAAACCT-AATTTTCACACACAAA-GACAA-------AG------GGGAAA-------ATAAAAA--AAGA--------AGAATT-AAG--TTGTCTATG-CTTATAAATTGACGTG-TATTCAATCGGGACC------AAA--------------------------TCTTCA-TTGGACGGCGAGTTTGCCAT-AACATTTAT-G-TATAAG-GGT-AC-AGA---GTCTCAATTAAA-AT----CA-A-GTTCAA--T-TATTG---TTCATGCAAT-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTTAATCT-T---AAT------TTTCATTT-GA-AA-CT-TTCAA-C--C--AGACCAAAATCAG-GGG-ATGAAA-------A-CGTTT----ATTC-AAGTC--TAAATTAA--TA--TGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTTTTAAAA-T-C-CG-TT-TTC-TGCAAGGA-----G-G----GAG-GG--AG----G----------TGAATCT----CATTA---TTTTGC
gi|6 : TCATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTT-TAAC-CA-T-TTCCAGGAA-TAAGAT-A-G-ATCAC--ACTTT-GCCGT-----ATGA-TGTT-A-AACGC-TATG-ATAATT--ATC--AT-AAT--GGAAATATCT--AGAA-G-AGTG---AA-A----A---------------------T----CAAA-TA---A-TTATT---TAAATCT-ATA-ATTTTCATT-T--GA-TA----CTT-TCCAA-GCAG-AC----TGAAATCGGCGGGATGA--AACGT--TCATTacatactgggtcttgaaatattatgcacatcactaggaactgccccgaaattcccagttacatacaatcg
gi|6 : TTAAATCTAT---AAT------TTTCATTT-GATAC-TT-TCCAA-G--C--AGACTGAAATCGGCGGG-ATGAAA---------CGTTC----ATTC-AAGTC--TGAATTAA--TA--GGAAGA-T-AAAAGAAG-CTG-TCT-CATG---T-GGTAT-TTCCAGAATGCTT----AA-T-C-CG-TT-TTT-GGTGAGGA-----GGGAGGTGGG-GG--TGGGT-GGG-TGGG--TTGAACCT----CACTA---TTCTGCcaagtctgaattaataggaagataaaagaagctgtctcatgtggtatttccagaatgcttaatccgtttttggtgaggagggaggtgggggtgggtgggtgggttgaacctcactattctgcacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : tcattgtaacataaaaatacgtactagacttttaaccatttccaggaataagatagatcacactttgccgtatgatgttaaacgctatgataattatcataatggaaatatctagaagagtgaaaatcaaataattatATT--AT---AT-AAT--GAAA-TATTT--AGAAAG-AGTG---AA-AATC-AAATAATCCA-------TAACTT----CAAA-CA---A-TT-CT---TAAATCT--TT-Aacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : CTTAAATCT-T---TATCCATGCTTCCATTT-GATAC-TC-TTCAAAC--TC-AGACTAAAATCAG-AGGTATGAAACCAAATCA-CGTTC----ATTCCAAGTC--TGAATTTACCTAG-CGAAGA-T-AAAA-GAG-CTG-TCTTCA-----TTGGTAT-TT-CAG-ATGCTT---AAATT-C-CG-TT-TTC-GGCGAGGC-----GTG----GAGTGG--TGGCGTGGG-T-GGGCTTGAACCTTTACCATAA---TTTTGCtccatgcttccatttgatactcttcaaactcagactaaaatcagaggtatgaaaccaaatcacgttcattccaagtctgaatttacctagcgaagataaaagagctgtcttcattggtatttcagatgcttaaattccgttttcggcgaggcgtggagtggtggcgtgggtgggcttgaacctttaccataattttgcacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : attatataatgaaatatttagaaagagtgaaaatcaaataatccataacttcaaacaattAAATCT-AAT-ACTATCAAT-A--AA-AA----TGT-TGTAG-GAAAATAATT-TTAATTCATTAAGATAA--CA--T--TCATTGCC--CTTAAATTCTT---TTTAGA--------C-AG-AGTTCCA-TTTGATCA-TTTCA-GAA-TCC-TTGAACAATGGAA-AGAAT-GTCT--TGGAAATTTATTGAACGGAAGTT-TTTGCGATTAA-TATACATGT-ACAT-TATAAATGTTCATC-ATAGCTTGGAGAT-TTAATCCTTAGCTAAATGCATTC-A--T----TTGTGCTGG-CCAGTTCAATTGAACTAATAGTAAGGCG-TAG-ATCAACTGTAGCACAAAAAACC-CGGGTTGAAACGT-AACTTTCACA----AA-GAC---------AGAAAAAAGGGATATACATGTATAAAAAAGAAGA--------AGAATT-AAG--TTGTTTATG-CTTATAAATTGACGTG-TACTCAGTCGGGACC------AAATAAATAGCCCAAGGCTATCCA-TGGTTCTTCA-ATGAATGGCGAGTTCACCAT-AACATCTAG------G---TGT-ACTAAT---AT----ATTAAGCGTCGAATA-A-AATCAAGTTTTGTTAATTTTTATGC-ACT----TT-CAA-A-ATGTTCTGTAT-CCTGGacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : T-TT-CAAAATGTT----------C-TG-TA-TCCTGGTAAGGA-----G------GGG-GG--------------GG--TTGAATCT----CACTA---TTTTtaaggaggggggggttgaatctcactatttt
gi|9 : aaatctaatactatcaataaaaatgttgtaggaaaataattttaattcattaagataacattcattgcccttaaattctttttagacagagttccatttgatcatttcagaatccttgaacaatggaaagaatgtcttggaaatttattgaacggaagtttttgcgattaatatacatgtacattataaatgttcatcatagcttggagatttaatccttagctaaatgcattcatttgtgctggccagttcaattgaactaatagtaaggcgtagatcaactgtagcacaaaaaacccgggttgaaacgtaactttcacaaagacagaaaaaagggatatacatgtataaaaaagaagaagaattaagttgtttatgcttataaattgacgtgtactcagtcgggaccaaataaatagcccaaggctatccatggttcttcaatgaatggcgagttcaccataacatctaggtgtactaatatattaagcgtcgaataaaatcaagttttgttaatttttatgcacTCATTGTGATCAAAGAATATACGC--A---GCACTCG-AAGC-CA-TGTTCCAGGAA-TTA-AT-A-G-TTCTCCCACATTTGCCATTCATCATGA-TGCT-A-CAAGCCTATG-ATAATT--ATC--ATTAATT-GAAAATATTTT-AGAA-GCAGTG---AA-AATC-AAATA------------TGA-TT----CAAAACA---AATT-TT---TATATCT-ATTTAATATCAAT-A--AA-AA----TTT-TCTAG-G-AA-TCATTATTAATTCGACAAGATGATTTA--TGCTC-TTGCT---TTAAATTCTT---CTAAAAAACACGCGC-GG-CTTCCCATTTCGATCATTT-CACGAATTTC-TTTAACCATGAAA-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTATTTAACTGTTCACAAAAATCATTGGTTAGCGGGCCTTGGACAGTTTATACATCAGCAAGAGGATTGTCAATGGTCTTTAAAATACTCTGTCACGCTTATATGACGATTCTCGAGCCAGCAATATATTGGCGAGGCGATTTTTGCTTATGATAACTAGATATGTCAGAGGCTTGTCTAAGATAAGATAATTCTTGGGACATTTTTC
Unaligned ( gi|15 ): AACATCGTATCTGCGAAACCATTACAATGGACCTGCAGTGGCGACAGTATCAAGATATGTCTGCAACTTAGGGCGTTGGAGTTCATTAATGTACTGTTTACTAGAGAATAAAATGATTAGGGGCCTTGAAGTTTTAACACGTCATCAAGTAAGGTTATCAAATGTTTGTTATATT
Unaligned ( gi|21 ): TTGGAGTTCAATATGTAACTGTTCACAGAAATCATTGATTAGAGGCCTTGAACGTCTTAACATCATCAGGTCCTTTCGCGCCTGATATGACGATTTCGTCAAACCAGCAACAAATTTGGCGAGGCC
Unaligned ( gi|24 ): AGTTACATACAATCGTACTGCAACCATTACTTGCAATGGCACAGGGAAATCTCG
Unaligned ( gi|25 ): ACCTCACTATTTTGCACACACTCGGTCTTAAAAT
Unaligned ( gi|26 ): CTTAAGGTGTTTATCAAAGCTGTCTTA
Alignments
lowQualScore : 111 111 111 1 222222222222 11111111 111 111111 11111111 111 666666666666666666666666666666666666666666666666666 666666666666666666666666666 2222222 2222222222 222222 22222 1 44444444444 1111111111111 222222222222 2222222222 1 33333 111 111111 1 11111 222222222 11111 111 11111 111111111111 444444444444444444
lowQualScore : 5 5 66 555 4 4 4 4 4 4 5 4 4 4 55 0 99999 3 3 3 3 33 77 44 3 77 3 111 3 3 111 3 2 3 333333333333 2 6666 2 888 3 6 555 2 3 3 44 77777777 4 0 4 4 2 888 55 55 333 444444 66666666 4 4 4 4 4 4 4 4 4 4 4 0 5 77 6 5 0 77 2 111 6 5 0 0 000000000000000000000000000000000000000000000000000 33 44 3 6 1 6 6 6 888888888888888888888888888 1111111 99 9999999999 1 1 6 99 0 6 8 333333 0 0 1 00000 2 6 9 0 2 0 6 66666666666 6 7777777777777 1 333333333333 0 4444444444 3 3 00000 6 6 6 3 5 000 666666 5 1 5 5 5 33333 4 4 000000000 33333 4 66 66 555 4 4 4 4 4 4 77777 8 4 4 8888 7 3 3 3 3 3 2 777777777777 4 777777777777777777 8888 777
lowQualScore : . . .. ... . . . . . . . . . . .. . ..... . . . . .. .. .. . .. . ... . . ... . . . ............ . .... . ... . . ... . . . .. ........ . . . . . ... .. .. ... ...... ........ . . . . . . . . . . . . . .. . . . .. . ... . . . . ................................................... .. .. . . . . . . ........................... ....... .. .......... . . . .. . . . ...... . . . ..... . . . . . . . ........... . ............. . ............ . .......... . . ..... . . . . . ... ...... . . . . . ..... . . ......... ..... . .. .. ... . . . . . . ..... . . . .... . . . . . . . ............ . .................. .... ...
lowQualScore : 0 0 99 666 4 0 0 0 0 0 7 0 0 0 55 3 11111 6 6 6 6 88 99 66 3 99 5 222 3 3 555 1 3 1 555555555555 9 1111 9 555 1 2 444 9 1 1 22 99999999 0 7 0 0 2 222 55 55 666 666666 11111111 4 4 4 4 4 4 4 4 4 4 4 4 7 99 6 7 1 11 4 666 6 0 1 2 777777777777777777777777777777777777777777777777777 11 44 0 7 0 7 7 7 555555555555555555555555555 7777777 22 3333333333 0 0 7 22 7 7 0 000000 8 8 4 66666 5 7 3 7 5 8 7 77777777777 7 2222222222222 0 333333333333 3 5555555555 7 3 00000 7 7 7 0 7 000 444444 7 4 7 0 0 55555 4 4 777777777 33333 4 11 11 000 4 4 4 4 4 4 22222 9 0 0 5555 3 6 6 6 6 6 1 333333333333 0 666666666666666666 5555 888
consensus : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TTC----AAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACACAC-AA-GAC---------AG------GGGAAA-------ATAAAAA--AA--------GAAGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GT----ATNAAG-GT---AC-A-AGTTCAAACT-T-----ATTGTTCATGC-AC-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
Reference ( family-4731 ) : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TTC----AAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACACAC-AA-GAC---------AG------GGGAAA-------ATAAAAA--AA--------GAAGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GT----ATNAAG-GT---AC-A-AGTTCAAACT-T-----ATTGTTCATGC-AC-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
gi|1 : TCATTGTGG-CATAGAA-ATACGC--A---G-ACTTC-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGC-GT-----ATGA-TG-T-A-CACGC-AATA-TTTATTTTATC--AT-AAT--GAAATTTTTA--AGAA-G-AGTG---AA-AATC-AAATACTGGTACATGTATAA-TTC----AAA-CA---A-TT-TTGTTTTAATCT-GCT-AATATCCATTC--AAAA----TT--TCTAG-GAAA-TCATT-TTAATTCGACGAGATGA--TA--T--TCATTGCT--CTTAAATTCCA---TTTCAA--------C-AG-GGTTTTA-TTCAAC-CA-AT-TA-GAA-TTC-TTGAA----------------TCT--TGATCATTTGTTG--TAAAAATG-TT---AATCA---ACGCTTTT-A-AGATTTAA----TCCTA-AAC----GAA-------------------ATGCATGC-A--T----TTGTTTTGG-CCAATTCAACTTAACTAATAGTAGGGCG-TAGCATTAAATGTTGCAT-AAAAACCTCGGGCCAAAACCCCAACTTTCACACAC--A-GAC------------------------------ATAAAAA--AAGGGGGGGGGGAGGGTT--AG--TCGTCTGTG-ATTATAAATTGACGTG-TACTCAGTCGGGACTTAGTCTAAATAAATAGCCCAAGGCTACCCA-T-A------A-ATAAA-GGT-------------ACA---------------TGT-AC-AGA---GC----CCCAA--AT---ACTA-TGTTCAA--T-T-----GTTGTTCATGC-ACT----TTCAA-A-ATTTTCAGTAT-TCTGACT------T-T---GAT------TTTCATTT-GA-AA-TA-TTTAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------C-CATTG----CTTC-AAGTC--TGAATTAA--TA--TGAAGA-T-AAAA-CAA-CTG-TCT-CATCATGT-GGTAT-TT-CAGAATGCTT---TAA-T-C-CG-TT-TTC-GGTCAGAA-----GTG----GTG-GT--TG----GG---------TAAATCT----CACTA---TTTTGC
gi|10 : cacatgtatgtgaaaattttgagatcgtcagtttatagtttatcaaagctgtcttaggagtatcttaagTTCACATGAACGGTGAGTTCACCAT-AAAATCTAA-AGTATAAAGTAT-AG-GCTCCCGA----ATAAAA-G-----C-A-AGTTCG--CT-T-----ATTGTTTAATC-ACATTTTTTTAA-A-ATTATCTGTATACTTGGCTTTTATCT-TCGTAAT------TTTAATTT-GA-AAACT-TTCAA-C--T--AGACTAAA-------GG----------------CGT------CTTC-AAGTC--TGAATTAA--TA--TGAAGATT-AAAA-CTG-TTG-TTT-CA-----TGGGTAT-TT-CAGAATGCAT---AAATT-C-CG-TTGCTC-AGCAAGGA-----G-G----GGG-GT--TA----GGA--------TGAATCT----CACTacacactcggtctttaaatgttatgcacatcaccaagaactgccccgaaactcccagttacatacaattgaaccattacctgcagggacgttggagttcattatgtaactgttcacagaaataattgattaggggtcttgaaaatatctaacatcatcaaggtaatcaagaggattagcaatggtc
gi|11 : ctT-AAAC-CAAT-TTGCAGAAAATCAGATTA-G-ATGTT--ATTTTTGCCAT------TGG-TACC-AACACGT-TACT-ATAATTT-ATC--AT-CAT--GAAA-TATTT--AGA-----GTG---AACA-TC-ACA---------------AA-TTTTGCTAAA-CAT--C-TT-TT---TTAATTT-ATC-AATATCAA-----AAAA----T----------------------AATTCCACAAAA------A--T---CATTA-------AAATTC--------AAA--------C-AG-A-TAATA-CT-GATTCA-TT-CA-GAA-TTC-catgtatttttgcacacactcggtcttggaaatattatgcacatcaccaagaactgcccgaaactcccagtgtgtacatacaatcgactgcacatactgcagtggca
gi|12 : gttcataagaaatttccagtaagacatatcttaggacaatttttgagatcatcttaagattatcttcaggtgttttatcaaaggttatctgaaagaacactaaacttaaaaacctcttaaaacgtattttgacaaacaagtgTATCAAT-AGAAAAA----AAA-TGTAG-GAAA-TCATT-TCAATTCGACAAGATGA--TA--T--TTGTTGTT--CTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTGAT-CA-AT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTGAATGAACTTG-TTTGCGAT-----------------TGTATAAATGCTCATC-AACGCTTGGAGAT-T--------------c
gi|14 : ATGCCC---AAA-T-C-CG-TT-TTC-GGCAAGGA-----GTG----GGA-AG---G----GGG-T-----TTGAATCT----CACTA---TTTTGCtaatcctaaatgnnnnnnnnnnnnnnnnnnnnnnnnnccgtgccactgcagtatgtgcagtcgattgtatgtac
gi|16 : gTTGATC-AACGCTTGTAGATAT--------------AATC-TTC-ATTT------GTTATGG-A--GTTCGAT------------AGGGCG-CAGCATCAATTGTAGTAC-AAAATCT-CCGGCCAAAA-CTTAACTTTCACACAC-AAGGACTGAAAAAAAAG------GGGAAA-------ATAAAAA--AA---------AGAAATT-AAG--TTGTCTATG-ATTATAAATTacacattaatgcacattaccaagaactgccccgaaactcccagttatatanacattaccaagaactgccccgaaactcccagatacatatacaatcgtactgcaaccattaccccagcacata
gi|17 : ttca---AA-A-TCCAAATA------------TGA-TTC----AAA-CACTTA-TT-TT---TATATCT-ATT-AATATCAAT-A--AAAA----TTTCTCTAGCGAAA-TCATT-T-AATTCGACAAGATGA--TA--T--GCTTTGCTTCTTTAAATTC------CTAAA--------C-AGTGGTTCCA-TTCGAT-CA-TT-CA-GAT-TTCTTTTAACCA-GAAA-
gi|18 : ga---G-GCTTT-GAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTATC--AAATTTGCCGT-----AAGT-TGCT-A-CACGG-TATG-ATAATT--ATC--AT-TAT--GAAAACCTTT--TGAG-G-AGTGA--AA-A-TC-AAATA------------TAA-TTT----AAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AAA
gi|19 : A-TTT----AAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AAAA----
gi|19 : ATAAAA-AGGGC-GTTT--TGGAGGTTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-CT-TATAAATCTTCATC-AACGCTTCAA----------------------CA--------------GTT-----------CAATTGAATTAATAGTAGGGCgggcgttttggaggtttgttgaatggaaatgtttgcgattaatatacatatacttataaatcttcatcaacgcttcaacagttcaattgaattaatagtagggctt
gi|2 : atttaaacaatttttaaatctattaatgtcaTCATTGTGA--ATAGAA-ATACACCAA---G-ACTTT-AAACATA-T-TTCCAG-AA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGAATGCT-A-CACGC-TATG-ATAATT--GCC--AT-AATTTAAAATTATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TTC----AAA-CA---A-TTCTT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--A-TGCATTCTTGGGTTAAAA--------TAAG-AGGTCCA-GTTGTT-CC-TT-CA-GAA-TTC-TTGAACCCTGAAACAGGGCGGCCTTGTGGACAAGTGGGAAAT-GAAATG-TTTGC-ACTAACTATACATAT-A-ATGTATAAATGTTCATC-AACGCCTGGAGA--T--------------ATGCATTCAATTTGCA-TTGTTTTGA------TCAATCAA---AATA-TA-GGCGTTAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAA-CCTAAC-TTCACTTAT------T---------AG------GGGAAA-------ATGAAAA--AA--------AGATATTT-AAAGTTCGTCTACGACTCATAAATTGACGTATTACTCAGTCGGAA------CC-AATAAATAGCCCAAGACTACCCA-T-TTTCTT-A-A-GAAAGGTGA-TTCA-CATAAACATCTAGCA-TACAT--TGTAAC-ATT---GT----ATAAAG-GT---AC-ACAGCCCAAACT-A-----TTTATTCATGCAAC-----TTCAA-ACATTTTCTGTAT-CCTGGC-TGAATCT-T---AAT------TTTCATTTGGG-AA-TTCTTCAA-C--TTGCGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC------TC-AAGTTTGTGAATTAT--TA--TGAGAA-T-AAAA-CAGCCTGTTCT-CA-----T-GGTACATG-TATATTGCTT---AAA-T-C-CGATT-TTC-GGCAAGGA------TA----GGG-GGTCTG----GGGTT-GGTTTTGAATAT----CACTA---TTTTGCtt
gi|20 : TCATTGTGA-CAAAGAA-CTACGC--A---G-AGTCT-AAGC-CA-T-TTTCAGGAG-TCAGAT-A-G-TTGTC--ATTTTTATC-C-----ATGA-TGCG-A-CACTT-TATG-----------------AAT--GAAAATATTT----AA-G-AGTGA--AA-A-TC-AAAT---------------A-TTT----AAA-CA---A-TC-TT---TCAATTT-ATcacaaccactctgtcttttgaaatatattgtacatcaccaagaactgccccgaaactcccagttacattacaatcgtactgcaaccattttacctgcagtgac
gi|22 : gGA-CATAGAA-ATATGC--A---G-ACTTT-AAAC-TA-T-TTCCAGAAA-T-----------------ACCTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AC-AAT--GAAAATATTT-----------------A-A-TC-TAATA------------TAA-TTC----AAA-c
gi|23 : AAAATCAG-GGA-ATTAAA-------A-CGTTC----CCTC-CA-TC--TGAATC--------------------A-CAT-CCA-TCT-TT-----T-GGCAT-TT-CAGAATGCTT---CAA-TCC-CG-TT-TTC-
gi|3 : ATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTTTAAAC-CA-T-TACCAGGAA-TAAGAT-ACGTTTCAC--ACATTTGCCGT-----ATGA-TGTTAA-AACGC-TATGAATAATT--ATCAAAT-AAT--GTAAATATTTAAAAAA-G-AGTGAGAAA-A-TC-AA--A------------TAA-TT-------A-TA---A--T-TT---CAAACCTCAAC-AACATTAAT-A--AAAtaa
gi|3 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaT-TTCAA-CGCT--AGACTAGAATCAG-GGA-CTGAAA-------AACGTTCAATTCTCA-AAGTC--TGAAT-AA--TAGCCGAAGA-TTAAAA-GAG-CTG-TCT-CA-----T-CGTAT-TT-CAGAATACTT---AAA-T-CATG-TT-TC---GCGAGGACGGAGGTG----TGG-GG--TG----GGT-G-GG--TTGAACCT----CACTAATCCTTTGCccctcctaaggctaagaaattgtcatgttatgatacaatttcaacgctagactagaatcagggactgaaaaacgttcaattctcaaagtctgaataatagccgaagattaaaagagctgtctcatcgtatttcagaatacttaaatcatgtttcgcgaggacggaggtgtggggtgggtgggttgaacctcactaatcctttgcacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|4 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaattgtaacataaaaatacgtactagacttttaaaccattaccaggaataagatacgtttcacacatttgccgtatgatgttaaaacgctatgaataattatcaaataatgtaaatatttaaaaaagagtgagaaaatcaaataattataatttcaaacctcaacaacattaataaaaccctcctaaggctaagaaattgtcatgttatgatacaaTCATTGTGA-CATAGAA-ATACAC--A---G-ACTTT-AAAC-TA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--GCC--AT-AAT--TAAAATATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TTC----AAA-CA---A-TT-CT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--ATGCAATTCTT---GTTAAA--------T-AG-AGTTCCA-TTTGTT-CC-TT-CA-GAA-TTC-TTGAACCCTGAAA-AGGGC-GCCT--TGGACAATTGTTGAATGGAAATG-TTTGCGACTAA-TATACATATAA-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTTGCAATTGTTTTGA------TCAATTCAAGTAATAGTAGGGCG-TAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAA-CCTAACTTTCACTT-------AT---------AG------GGGAAA-------ATAAAAA--AA--------G-ATATTTAAAG--TCGTCTACG-CTCATAAATTGACGTA-TACTCAGTCGGAA------CCAAATAAATAGCCCAAGACTACCCATT-GTTCTTCA-ATGAAAGGTGAGTTCA-CAT-AACATCTAG-A-TACA---TGT-AC-ATT---GT----ATAAAG-GT---AC-ACAGCCCAAACTAT-----ATTATTCATGC-AC-----TTCAACA-ATTTTCTGTAT-CCTGGCTTGAATCT-T---AAT------TTTCATTT-GG-AA-TT-TTCAA-C--T--GGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTT--TGAATTAT--TA--TGAGAA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAC-AT-GTATATGCTT---AAA-T-C-CG-TT-TTC-GGCAAGGA-----GTA----GGG-GGT-TG----GGGTT-GG--TTGAATAT----CACTA---TTTTGCacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|5 : CGT-----ATGA-TGTT-A-CACGC-TATG-TTAATT--ATC--AT-TAT--TAAAATATTT--CGAA-G-AGTG---AA-AATC-AAATA------------TAA-TTC----AAA-C---------CT---TAAATCT-ATT-AATATTAAG-A--AAAAAAAATT---CTAG-GAAA-TCATT-TTAATTCCACAAGATGA--TA--T--TCATTGCT--TTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTTAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTAAAT-GAAATATTTTGCGATTAA-TATACATGT-ACATGTATAAATGTTCATCTAACCCT---AAAC-TAA------------ATACACTC-A--T----TTGTTTTGGACA-GTTCAATTGAACTAATGATAGGATG-TAGCATCAACTGTAGTAC-AAAAATT-CTGGCCAAAA-CCTAATTTTCACACACAAA-GACAA-------AG------GGGAAA-------ATAAAAA--AA--------GAAGAATT-AAG--TTGTCTATG-CTTATAAATTGACGTG-TATTCAATCGGGA------CCAAA--------------------------TCTTCA-TTGGACGGCGAGTTTGCCAT-AACATTTAT-G-TATAAG-GGT-AC-AGA---GTCTCAATTAAA-AT----C-A-AGTTCAA--T-T-----ATTGTTCATGCAAT-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTTAATCT-T---AAT------TTTCATTT-GA-AA-CT-TTCAA-C--C--AGACCAAAATCAG-GGG-ATGAAA-------A-CGTTT----ATTC-AAGTC--TAAATTAA--TA--TGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTTTTAAAA-T-C-CG-TT-TTC-TGCAAGGA-----G-G----GAG-GG--AG----G----------TGAATCT----CATTA---TTTTGC
gi|6 : TCATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTT-TAAC-CA-T-TTCCAGGAA-TAAGAT-A-G-ATCAC--ACTTT-GCCGT-----ATGA-TGTT-A-AACGC-TATG-ATAATT--ATC--AT-AAT--GGAAATATCT--AGAA-G-AGTG---AA-A----A---------------------TC----AAA-TA---A-TTATT---TAAATCT-ATA-ATTTTCATT-T--GATA----CTT-TCCAA-GCAG-AC----TGAAATCGGCGGGATGA--AACGT--TCATTacatactgggtcttgaaatattatgcacatcactaggaactgccccgaaattcccagttacatacaatcg
gi|6 : TTAAATCTAT---AAT------TTTCATTT-GATAC-TT-TCCAA-G--C--AGACTGAAATCGGCGGG-ATGAAA---------CGTTC----ATTC-AAGTC--TGAATTAA--TA--GGAAGA-T-AAAAGAAG-CTG-TCT-CATG---T-GGTAT-TTCCAGAATGCTT----AA-T-C-CG-TT-TTT-GGTGAGGA-----GGGAGGTGGG-GG--TGGGT-GGG-TGGG--TTGAACCT----CACTA---TTCTGCcaagtctgaattaataggaagataaaagaagctgtctcatgtggtatttccagaatgcttaatccgtttttggtgaggagggaggtgggggtgggtgggtgggttgaacctcactattctgcacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : tcattgtaacataaaaatacgtactagacttttaaccatttccaggaataagatagatcacactttgccgtatgatgttaaacgctatgataattatcataatggaaatatctagaagagtgaaaatcaaataattatATT--AT---AT-AAT--GAAA-TATTT--AGAAAG-AGTG---AA-AATC-AAATAATCCA-------TAACTTC----AAA-CA---A-TT-CT---TAAATCT--TT-Aacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : CTTAAATCT-T---TATCCATGCTTCCATTT-GATAC-TC-TTCAAAC--TC-AGACTAAAATCAG-AGGTATGAAACCAAATCA-CGTTC----ATTCCAAGTC--TGAATTTACCTAG-CGAAGA-T-AAAA-GAG-CTG-TCTTCA-----TTGGTAT-TT-CAG-ATGCTT---AAATT-C-CG-TT-TTC-GGCGAGGC-----GTG----GAGTGG--TGGCGTGGG-T-GGGCTTGAACCTTTACCATAA---TTTTGCtccatgcttccatttgatactcttcaaactcagactaaaatcagaggtatgaaaccaaatcacgttcattccaagtctgaatttacctagcgaagataaaagagctgtcttcattggtatttcagatgcttaaattccgttttcggcgaggcgtggagtggtggcgtgggtgggcttgaacctttaccataattttgcacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : attatataatgaaatatttagaaagagtgaaaatcaaataatccataacttcaaacaattAAATCT-AAT-ACTATCAAT-A--AAAA----TGT-TGTAG-GAAAATAATT-TTAATTCATTAAGATAA--CA--T--TCATTGCC--CTTAAATTCTT---TTTAGA--------C-AG-AGTTCCA-TTTGAT-CA-TTTCA-GAA-TCC-TTGAACAATGGAA-AGAAT-GTCT--TGGAAATTTATTGAACGGAAGTT-TTTGCGATTAA-TATACATGT-ACAT-TATAAATGTTCATC-ATAGCTTGGAGAT-TTAATCCTTAGCTAAATGCATTC-A--T----TTGTGCTGG-CCAGTTCAATTGAACTAATAGTAAGGCG-TAG-ATCAACTGTAGCACAAAAAACC-CGGGTTGAAA-CGTAACTTTCACA----AA-GAC---------AGAAAAAAGGGATATACATGTATAAAAAAGAA--------GAAGAATT-AAG--TTGTTTATG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTATCCA-TGGTTCTTCA-ATGAATGGCGAGTTCACCAT-AACATCTAG------G---TGT-ACTAAT---AT----ATTAAGCGTCGAAT-A-AAATCAAGTT-TTGTTAATT-TTTATGC-ACT----TTCAA-A-ATGTTCTGTAT-CCTGGacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : T-TT-CAAAATGTT----------C-TG-TA-TCCTGGTAAGGA-----G------GGG-GG--------------GG--TTGAATCT----CACTA---TTTTtaaggaggggggggttgaatctcactatttt
gi|9 : aaatctaatactatcaataaaaatgttgtaggaaaataattttaattcattaagataacattcattgcccttaaattctttttagacagagttccatttgatcatttcagaatccttgaacaatggaaagaatgtcttggaaatttattgaacggaagtttttgcgattaatatacatgtacattataaatgttcatcatagcttggagatttaatccttagctaaatgcattcatttgtgctggccagttcaattgaactaatagtaaggcgtagatcaactgtagcacaaaaaacccgggttgaaacgtaactttcacaaagacagaaaaaagggatatacatgtataaaaaagaagaagaattaagttgtttatgcttataaattgacgtgtactcagtcgggaccaaataaatagcccaaggctatccatggttcttcaatgaatggcgagttcaccataacatctaggtgtactaatatattaagcgtcgaataaaatcaagttttgttaatttttatgcacTCATTGTGATCAAAGAATATACGC--A---GCACTCG-AAGC-CA-TGTTCCAGGAA-TTA-AT-A-G-TTCTCCCACATTTGCCATTCATCATGA-TGCT-A-CAAGCCTATG-ATAATT--ATC--ATTAATT-GAAAATATTTT-AGAA-GCAGTG---AA-AATC-AAATA------------TGA-TTC----AAAACA---AATT-TT---TATATCT-ATTTAATATCAAT-A--AAAA----TTT-TCTAG-G-AA-TCATTATTAATTCGACAAGATGATTTA--TGCTC-TTGCT---TTAAATTCTT---CTAAAAAACACGCGC-GG-CTTCCCATTTCGAT-CATTT-CACGAATTTC-TTTAACCATGAAA-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTATTTAACTGTTCACAAAAATCATTGGTTAGCGGGCCTTGGACAGTTTATACATCAGCAAGAGGATTGTCAATGGTCTTTAAAATACTCTGTCACGCTTATATGACGATTCTCGAGCCAGCAATATATTGGCGAGGCGATTTTTGCTTATGATAACTAGATATGTCAGAGGCTTGTCTAAGATAAGATAATTCTTGGGACATTTTTC
Unaligned ( gi|15 ): AACATCGTATCTGCGAAACCATTACAATGGACCTGCAGTGGCGACAGTATCAAGATATGTCTGCAACTTAGGGCGTTGGAGTTCATTAATGTACTGTTTACTAGAGAATAAAATGATTAGGGGCCTTGAAGTTTTAACACGTCATCAAGTAAGGTTATCAAATGTTTGTTATATT
Unaligned ( gi|21 ): TTGGAGTTCAATATGTAACTGTTCACAGAAATCATTGATTAGAGGCCTTGAACGTCTTAACATCATCAGGTCCTTTCGCGCCTGATATGACGATTTCGTCAAACCAGCAACAAATTTGGCGAGGCC
Unaligned ( gi|24 ): AGTTACATACAATCGTACTGCAACCATTACTTGCAATGGCACAGGGAAATCTCG
Unaligned ( gi|25 ): ACCTCACTATTTTGCACACACTCGGTCTTAAAAT
Unaligned ( gi|26 ): CTTAAGGTGTTTATCAAAGCTGTCTTA
Alignments
lowQualScore : 111 111 111 1 222222222222 11111111 111 111111 11111111 111 666666666666666666666666666666666666666666666666666 666666666666666666666666666 2222222 2222222222 222222 22222 1 44444444444 1111111111111 222222222222 2222222222 1 33333 111 111111 1 11111 222222222 11111 111 11111 111111111111 444444444444444444
lowQualScore : 5 5 66 555 4 4 4 4 4 4 5 4 4 4 55 0 99999 3 3 3 3 33 77 44 3 77 3 111 3 3 111 3 2 3 333333333333 2 6666 2 888 3 6 555 2 3 3 44 77777777 4 0 4 4 2 888 55 55 333 444444 66666666 4 4 4 4 4 4 4 4 4 4 4 0 5 77 6 5 0 77 2 111 6 5 0 0 000000000000000000000000000000000000000000000000000 33 44 3 6 1 6 6 6 888888888888888888888888888 1111111 99 9999999999 1 1 6 99 0 6 8 333333 0 0 1 00000 2 6 9 0 2 0 6 66666666666 6 7777777777777 1 333333333333 0 4444444444 3 3 00000 6 6 6 3 5 000 666666 5 1 5 5 5 33333 4 4 000000000 33333 4 66 66 555 4 4 4 4 4 4 77777 8 4 4 8888 7 3 3 3 3 3 2 777777777777 4 777777777777777777 8888 777
lowQualScore : . . .. ... . . . . . . . . . . .. . ..... . . . . .. .. .. . .. . ... . . ... . . . ............ . .... . ... . . ... . . . .. ........ . . . . . ... .. .. ... ...... ........ . . . . . . . . . . . . . .. . . . .. . ... . . . . ................................................... .. .. . . . . . . ........................... ....... .. .......... . . . .. . . . ...... . . . ..... . . . . . . . ........... . ............. . ............ . .......... . . ..... . . . . . ... ...... . . . . . ..... . . ......... ..... . .. .. ... . . . . . . ..... . . . .... . . . . . . . ............ . .................. .... ...
lowQualScore : 0 0 99 666 4 0 0 0 0 0 7 0 0 0 55 3 11111 6 6 6 6 88 99 66 3 99 5 222 3 3 555 1 3 1 555555555555 9 1111 9 555 1 2 444 9 1 1 22 99999999 0 7 0 0 2 222 55 55 666 666666 11111111 4 4 4 4 4 4 4 4 4 4 4 4 7 99 6 7 1 11 4 666 6 0 1 2 777777777777777777777777777777777777777777777777777 11 44 0 7 0 7 7 7 555555555555555555555555555 7777777 22 3333333333 0 0 7 22 7 7 0 000000 8 8 4 66666 5 7 3 7 5 8 7 77777777777 7 2222222222222 0 333333333333 3 5555555555 7 3 00000 7 7 7 0 7 000 444444 7 4 7 0 0 55555 4 4 777777777 33333 4 11 11 000 4 4 4 4 4 4 22222 9 0 0 5555 3 6 6 6 6 6 1 333333333333 0 666666666666666666 5555 888
consensus : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TTC----AAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACACAC-AA-GAC---------AG------GGGAAA-------ATAAAAA--AA--------GAAGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GT----ATNAAG-GT---AC-A-AGTTCAAACT-T-----ATTGTTCATGC-AC-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
Reference ( family-4731 ) : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TTC----AAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACACAC-AA-GAC---------AG------GGGAAA-------ATAAAAA--AA--------GAAGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GT----ATNAAG-GT---AC-A-AGTTCAAACT-T-----ATTGTTCATGC-AC-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
gi|1 : TCATTGTGG-CATAGAA-ATACGC--A---G-ACTTC-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGC-GT-----ATGA-TG-T-A-CACGC-AATA-TTTATTTTATC--AT-AAT--GAAATTTTTA--AGAA-G-AGTG---AA-AATC-AAATACTGGTACATGTATAA-TTC----AAA-CA---A-TT-TTGTTTTAATCT-GCT-AATATCCATTC--AAAA----TT--TCTAG-GAAA-TCATT-TTAATTCGACGAGATGA--TA--T--TCATTGCT--CTTAAATTCCA---TTTCAA--------C-AG-GGTTTTA-TTCAAC-CA-AT-TA-GAA-TTC-TTGAA----------------TCT--TGATCATTTGTTG--TAAAAATG-TT---AATCA---ACGCTTTT-A-AGATTTAA----TCCTA-AAC----GAA-------------------ATGCATGC-A--T----TTGTTTTGG-CCAATTCAACTTAACTAATAGTAGGGCG-TAGCATTAAATGTTGCAT-AAAAACCTCGGGCCAAAACCCCAACTTTCACACAC--A-GAC------------------------------ATAAAAA--AAGGGGGGGGGGAGGGTT--AG--TCGTCTGTG-ATTATAAATTGACGTG-TACTCAGTCGGGACTTAGTCTAAATAAATAGCCCAAGGCTACCCA-T-A------A-ATAAA-GGT-------------ACA---------------TGT-AC-AGA---GC----CCCAA--AT---ACTA-TGTTCAA--T-T-----GTTGTTCATGC-ACT----TTCAA-A-ATTTTCAGTAT-TCTGACT------T-T---GAT------TTTCATTT-GA-AA-TA-TTTAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------C-CATTG----CTTC-AAGTC--TGAATTAA--TA--TGAAGA-T-AAAA-CAA-CTG-TCT-CATCATGT-GGTAT-TT-CAGAATGCTT---TAA-T-C-CG-TT-TTC-GGTCAGAA-----GTG----GTG-GT--TG----GG---------TAAATCT----CACTA---TTTTGC
gi|10 : cacatgtatgtgaaaattttgagatcgtcagtttatagtttatcaaagctgtcttaggagtatcttaagTTCACATGAACGGTGAGTTCACCAT-AAAATCTAA-AGTATAAAGTAT-AG-GCTCCCGA----ATAAAA-G-----C-A-AGTTCG--CT-T-----ATTGTTTAATC-ACATTTTTTTAA-A-ATTATCTGTATACTTGGCTTTTATCT-TCGTAAT------TTTAATTT-GA-AAACT-TTCAA-C--T--AGACTAAA-------GG----------------CGT------CTTC-AAGTC--TGAATTAA--TA--TGAAGATT-AAAA-CTG-TTG-TTT-CA-----TGGGTAT-TT-CAGAATGCAT---AAATT-C-CG-TTGCTC-AGCAAGGA-----G-G----GGG-GT--TA----GGA--------TGAATCT----CACTacacactcggtctttaaatgttatgcacatcaccaagaactgccccgaaactcccagttacatacaattgaaccattacctgcagggacgttggagttcattatgtaactgttcacagaaataattgattaggggtcttgaaaatatctaacatcatcaaggtaatcaagaggattagcaatggtc
gi|11 : ctT-AAAC-CAAT-TTGCAGAAAATCAGATTA-G-ATGTT--ATTTTTGCCAT------TGG-TACC-AACACGT-TACT-ATAATTT-ATC--AT-CAT--GAAA-TATTT--AGA-----GTG---AACA-TC-ACA---------------AA-TTTTGCTAAA-CAT--C-TT-TT---TTAATTT-ATC-AATATCAA-----AAAA----T----------------------AATTCCACAAAA------A--T---CATTA-------AAATTC--------AAA--------C-AG-A-TAATA-CT-GATTCA-TT-CA-GAA-TTC-catgtatttttgcacacactcggtcttggaaatattatgcacatcaccaagaactgcccgaaactcccagtgtgtacatacaatcgactgcacatactgcagtggca
gi|12 : gttcataagaaatttccagtaagacatatcttaggacaatttttgagatcatcttaagattatcttcaggtgttttatcaaaggttatctgaaagaacactaaacttaaaaacctcttaaaacgtattttgacaaacaagtgTATCAAT-AGAAAAA----AAA-TGTAG-GAAA-TCATT-TCAATTCGACAAGATGA--TA--T--TTGTTGTT--CTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTGAT-CA-AT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTGAATGAACTTG-TTTGCGAT-----------------TGTATAAATGCTCATC-AACGCTTGGAGAT-T--------------c
gi|14 : ATGCCC---AAA-T-C-CG-TT-TTC-GGCAAGGA-----GTG----GGA-AG---G----GGG-T-----TTGAATCT----CACTA---TTTTGCtaatcctaaatgnnnnnnnnnnnnnnnnnnnnnnnnnccgtgccactgcagtatgtgcagtcgattgtatgtac
gi|16 : gTTGATC-AACGCTTGTAGATAT--------------AATC-TTC-ATTT------GTTATGG-A--GTTCGAT------------AGGGCG-CAGCATCAATTGTAGTAC-AAAATCT-CCGGCCAAAA-CTTAACTTTCACACAC-AAGGACTGAAAAAAAAG------GGGAAA-------ATAAAAA--AA---------AGAAATT-AAG--TTGTCTATG-ATTATAAATTacacattaatgcacattaccaagaactgccccgaaactcccagttatatanacattaccaagaactgccccgaaactcccagatacatatacaatcgtactgcaaccattaccccagcacata
gi|17 : ttca---AA-A-TCCAAATA------------TGA-TTC----AAA-CACTTA-TT-TT---TATATCT-ATT-AATATCAAT-A--AAAA----TTTCTCTAGCGAAA-TCATT-T-AATTCGACAAGATGA--TA--T--GCTTTGCTTCTTTAAATTC------CTAAA--------C-AGTGGTTCCA-TTCGAT-CA-TT-CA-GAT-TTCTTTTAACCA-GAAA-
gi|18 : ga---G-GCTTT-GAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTATC--AAATTTGCCGT-----AAGT-TGCT-A-CACGG-TATG-ATAATT--ATC--AT-TAT--GAAAACCTTT--TGAG-G-AGTGA--AA-A-TC-AAATA------------TAA-TTT----AAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AAA
gi|19 : A-TTT----AAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AAAA----
gi|19 : ATAAAA-AGGGC-GTTT--TGGAGGTTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-CT-TATAAATCTTCATC-AACGCTTCAA----------------------CA--------------GTT-----------CAATTGAATTAATAGTAGGGCgggcgttttggaggtttgttgaatggaaatgtttgcgattaatatacatatacttataaatcttcatcaacgcttcaacagttcaattgaattaatagtagggctt
gi|2 : atttaaacaatttttaaatctattaatgtcaTCATTGTGA--ATAGAA-ATACACCAA---G-ACTTT-AAACATA-T-TTCCAG-AA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGAATGCT-A-CACGC-TATG-ATAATT--GCC--AT-AATTTAAAATTATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TTC----AAA-CA---A-TTCTT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--A-TGCATTCTTGGGTTAAAA--------TAAG-AGGTCCA-GTTGTT-CC-TT-CA-GAA-TTC-TTGAACCCTGAAACAGGGCGGCCTTGTGGACAAGTGGGAAAT-GAAATG-TTTGC-ACTAACTATACATAT-A-ATGTATAAATGTTCATC-AACGCCTGGAGA--T--------------ATGCATTCAATTTGCA-TTGTTTTGA------TCAATCAA---AATA-TA-GGCGTTAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAA-CCTAAC-TTCACTTAT------T---------AG------GGGAAA-------ATGAAAA--AA--------AGATATTT-AAAGTTCGTCTACGACTCATAAATTGACGTATTACTCAGTCGGAA------CC-AATAAATAGCCCAAGACTACCCA-T-TTTCTT-A-A-GAAAGGTGA-TTCA-CATAAACATCTAGCA-TACAT--TGTAAC-ATT---GT----ATAAAG-GT---AC-ACAGCCCAAACT-A-----TTTATTCATGCAAC-----TTCAA-ACATTTTCTGTAT-CCTGGC-TGAATCT-T---AAT------TTTCATTTGGG-AA-TTCTTCAA-C--TTGCGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC------TC-AAGTTTGTGAATTAT--TA--TGAGAA-T-AAAA-CAGCCTGTTCT-CA-----T-GGTACATG-TATATTGCTT---AAA-T-C-CGATT-TTC-GGCAAGGA------TA----GGG-GGTCTG----GGGTT-GGTTTTGAATAT----CACTA---TTTTGCtt
gi|20 : TCATTGTGA-CAAAGAA-CTACGC--A---G-AGTCT-AAGC-CA-T-TTTCAGGAG-TCAGAT-A-G-TTGTC--ATTTTTATC-C-----ATGA-TGCG-A-CACTT-TATG-----------------AAT--GAAAATATTT----AA-G-AGTGA--AA-A-TC-AAAT---------------A-TTT----AAA-CA---A-TC-TT---TCAATTT-ATcacaaccactctgtcttttgaaatatattgtacatcaccaagaactgccccgaaactcccagttacattacaatcgtactgcaaccattttacctgcagtgac
gi|22 : gGA-CATAGAA-ATATGC--A---G-ACTTT-AAAC-TA-T-TTCCAGAAA-T-----------------ACCTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AC-AAT--GAAAATATTT-----------------A-A-TC-TAATA------------TAA-TTC----AAA-c
gi|23 : AAAATCAG-GGA-ATTAAA-------A-CGTTC----CCTC-CA-TC--TGAATC--------------------A-CAT-CCA-TCT-TT-----T-GGCAT-TT-CAGAATGCTT---CAA-TCC-CG-TT-TTC-
gi|3 : ATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTTTAAAC-CA-T-TACCAGGAA-TAAGAT-ACGTTTCAC--ACATTTGCCGT-----ATGA-TGTTAA-AACGC-TATGAATAATT--ATCAAAT-AAT--GTAAATATTTAAAAAA-G-AGTGAGAAA-A-TC-AA--A------------TAA-TT-------A-TA---A--T-TT---CAAACCTCAAC-AACATTAAT-A--AAAtaa
gi|3 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaT-TTCAA-CGCT--AGACTAGAATCAG-GGA-CTGAAA-------AACGTTCAATTCTCA-AAGTC--TGAAT-AA--TAGCCGAAGA-TTAAAA-GAG-CTG-TCT-CA-----T-CGTAT-TT-CAGAATACTT---AAA-T-CATG-TT-TC---GCGAGGACGGAGGTG----TGG-GG--TG----GGT-G-GG--TTGAACCT----CACTAATCCTTTGCccctcctaaggctaagaaattgtcatgttatgatacaatttcaacgctagactagaatcagggactgaaaaacgttcaattctcaaagtctgaataatagccgaagattaaaagagctgtctcatcgtatttcagaatacttaaatcatgtttcgcgaggacggaggtgtggggtgggtgggttgaacctcactaatcctttgcacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|4 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaattgtaacataaaaatacgtactagacttttaaaccattaccaggaataagatacgtttcacacatttgccgtatgatgttaaaacgctatgaataattatcaaataatgtaaatatttaaaaaagagtgagaaaatcaaataattataatttcaaacctcaacaacattaataaaaccctcctaaggctaagaaattgtcatgttatgatacaaTCATTGTGA-CATAGAA-ATACAC--A---G-ACTTT-AAAC-TA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--GCC--AT-AAT--TAAAATATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TTC----AAA-CA---A-TT-CT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--ATGCAATTCTT---GTTAAA--------T-AG-AGTTCCA-TTTGTT-CC-TT-CA-GAA-TTC-TTGAACCCTGAAA-AGGGC-GCCT--TGGACAATTGTTGAATGGAAATG-TTTGCGACTAA-TATACATATAA-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTTGCAATTGTTTTGA------TCAATTCAAGTAATAGTAGGGCG-TAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAA-CCTAACTTTCACTT-------AT---------AG------GGGAAA-------ATAAAAA--AA--------G-ATATTTAAAG--TCGTCTACG-CTCATAAATTGACGTA-TACTCAGTCGGAA------CCAAATAAATAGCCCAAGACTACCCATT-GTTCTTCA-ATGAAAGGTGAGTTCA-CAT-AACATCTAG-A-TACA---TGT-AC-ATT---GT----ATAAAG-GT---AC-ACAGCCCAAACTAT-----ATTATTCATGC-AC-----TTCAACA-ATTTTCTGTAT-CCTGGCTTGAATCT-T---AAT------TTTCATTT-GG-AA-TT-TTCAA-C--T--GGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTT--TGAATTAT--TA--TGAGAA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAC-AT-GTATATGCTT---AAA-T-C-CG-TT-TTC-GGCAAGGA-----GTA----GGG-GGT-TG----GGGTT-GG--TTGAATAT----CACTA---TTTTGCacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|5 : CGT-----ATGA-TGTT-A-CACGC-TATG-TTAATT--ATC--AT-TAT--TAAAATATTT--CGAA-G-AGTG---AA-AATC-AAATA------------TAA-TTC----AAA-C---------CT---TAAATCT-ATT-AATATTAAG-A--AAAAAAAATT---CTAG-GAAA-TCATT-TTAATTCCACAAGATGA--TA--T--TCATTGCT--TTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTTAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTAAAT-GAAATATTTTGCGATTAA-TATACATGT-ACATGTATAAATGTTCATCTAACCCT---AAAC-TAA------------ATACACTC-A--T----TTGTTTTGGACA-GTTCAATTGAACTAATGATAGGATG-TAGCATCAACTGTAGTAC-AAAAATT-CTGGCCAAAA-CCTAATTTTCACACACAAA-GACAA-------AG------GGGAAA-------ATAAAAA--AA--------GAAGAATT-AAG--TTGTCTATG-CTTATAAATTGACGTG-TATTCAATCGGGA------CCAAA--------------------------TCTTCA-TTGGACGGCGAGTTTGCCAT-AACATTTAT-G-TATAAG-GGT-AC-AGA---GTCTCAATTAAA-AT----C-A-AGTTCAA--T-T-----ATTGTTCATGCAAT-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTTAATCT-T---AAT------TTTCATTT-GA-AA-CT-TTCAA-C--C--AGACCAAAATCAG-GGG-ATGAAA-------A-CGTTT----ATTC-AAGTC--TAAATTAA--TA--TGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTTTTAAAA-T-C-CG-TT-TTC-TGCAAGGA-----G-G----GAG-GG--AG----G----------TGAATCT----CATTA---TTTTGC
gi|6 : TCATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTT-TAAC-CA-T-TTCCAGGAA-TAAGAT-A-G-ATCAC--ACTTT-GCCGT-----ATGA-TGTT-A-AACGC-TATG-ATAATT--ATC--AT-AAT--GGAAATATCT--AGAA-G-AGTG---AA-A----A---------------------TC----AAA-TA---A-TTATT---TAAATCT-ATA-ATTTTCATT-T--GATA----CTT-TCCAA-GCAG-AC----TGAAATCGGCGGGATGA--AACGT--TCATTacatactgggtcttgaaatattatgcacatcactaggaactgccccgaaattcccagttacatacaatcg
gi|6 : TTAAATCTAT---AAT------TTTCATTT-GATAC-TT-TCCAA-G--C--AGACTGAAATCGGCGGG-ATGAAA---------CGTTC----ATTC-AAGTC--TGAATTAA--TA--GGAAGA-T-AAAAGAAG-CTG-TCT-CATG---T-GGTAT-TTCCAGAATGCTT----AA-T-C-CG-TT-TTT-GGTGAGGA-----GGGAGGTGGG-GG--TGGGT-GGG-TGGG--TTGAACCT----CACTA---TTCTGCcaagtctgaattaataggaagataaaagaagctgtctcatgtggtatttccagaatgcttaatccgtttttggtgaggagggaggtgggggtgggtgggtgggttgaacctcactattctgcacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : tcattgtaacataaaaatacgtactagacttttaaccatttccaggaataagatagatcacactttgccgtatgatgttaaacgctatgataattatcataatggaaatatctagaagagtgaaaatcaaataattatATT--AT---AT-AAT--GAAA-TATTT--AGAAAG-AGTG---AA-AATC-AAATAATCCA-------TAACTTC----AAA-CA---A-TT-CT---TAAATCT--TT-Aacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : CTTAAATCT-T---TATCCATGCTTCCATTT-GATAC-TC-TTCAAAC--TC-AGACTAAAATCAG-AGGTATGAAACCAAATCA-CGTTC----ATTCCAAGTC--TGAATTTACCTAG-CGAAGA-T-AAAA-GAG-CTG-TCTTCA-----TTGGTAT-TT-CAG-ATGCTT---AAATT-C-CG-TT-TTC-GGCGAGGC-----GTG----GAGTGG--TGGCGTGGG-T-GGGCTTGAACCTTTACCATAA---TTTTGCtccatgcttccatttgatactcttcaaactcagactaaaatcagaggtatgaaaccaaatcacgttcattccaagtctgaatttacctagcgaagataaaagagctgtcttcattggtatttcagatgcttaaattccgttttcggcgaggcgtggagtggtggcgtgggtgggcttgaacctttaccataattttgcacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : attatataatgaaatatttagaaagagtgaaaatcaaataatccataacttcaaacaattAAATCT-AAT-ACTATCAAT-A--AAAA----TGT-TGTAG-GAAAATAATT-TTAATTCATTAAGATAA--CA--T--TCATTGCC--CTTAAATTCTT---TTTAGA--------C-AG-AGTTCCA-TTTGAT-CA-TTTCA-GAA-TCC-TTGAACAATGGAA-AGAAT-GTCT--TGGAAATTTATTGAACGGAAGTT-TTTGCGATTAA-TATACATGT-ACAT-TATAAATGTTCATC-ATAGCTTGGAGAT-TTAATCCTTAGCTAAATGCATTC-A--T----TTGTGCTGG-CCAGTTCAATTGAACTAATAGTAAGGCG-TAG-ATCAACTGTAGCACAAAAAACC-CGGGTTGAAA-CGTAACTTTCACA----AA-GAC---------AGAAAAAAGGGATATACATGTATAAAAAAGAA--------GAAGAATT-AAG--TTGTTTATG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTATCCA-TGGTTCTTCA-ATGAATGGCGAGTTCACCAT-AACATCTAG------G---TGT-ACTAAT---AT----ATTAAGCGTCGAAT-A-AAATCAAGTT-TTGTTAATT-TTTATGC-ACT----TTCAA-A-ATGTTCTGTAT-CCTGGacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : T-TT-CAAAATGTT----------C-TG-TA-TCCTGGTAAGGA-----G------GGG-GG--------------GG--TTGAATCT----CACTA---TTTTtaaggaggggggggttgaatctcactatttt
gi|9 : aaatctaatactatcaataaaaatgttgtaggaaaataattttaattcattaagataacattcattgcccttaaattctttttagacagagttccatttgatcatttcagaatccttgaacaatggaaagaatgtcttggaaatttattgaacggaagtttttgcgattaatatacatgtacattataaatgttcatcatagcttggagatttaatccttagctaaatgcattcatttgtgctggccagttcaattgaactaatagtaaggcgtagatcaactgtagcacaaaaaacccgggttgaaacgtaactttcacaaagacagaaaaaagggatatacatgtataaaaaagaagaagaattaagttgtttatgcttataaattgacgtgtactcagtcgggaccaaataaatagcccaaggctatccatggttcttcaatgaatggcgagttcaccataacatctaggtgtactaatatattaagcgtcgaataaaatcaagttttgttaatttttatgcacTCATTGTGATCAAAGAATATACGC--A---GCACTCG-AAGC-CA-TGTTCCAGGAA-TTA-AT-A-G-TTCTCCCACATTTGCCATTCATCATGA-TGCT-A-CAAGCCTATG-ATAATT--ATC--ATTAATT-GAAAATATTTT-AGAA-GCAGTG---AA-AATC-AAATA------------TGA-TTC----AAAACA---AATT-TT---TATATCT-ATTTAATATCAAT-A--AAAA----TTT-TCTAG-G-AA-TCATTATTAATTCGACAAGATGATTTA--TGCTC-TTGCT---TTAAATTCTT---CTAAAAAACACGCGC-GG-CTTCCCATTTCGAT-CATTT-CACGAATTTC-TTTAACCATGAAA-
blockSeqs : T T CA CTA C T A A G A C T C T CC TCATC A A A C AA T AA T TT A AAA A C AGA C A C ATCCA C TGCT A CTT A C . C T . GA AAAATT C A A C TTT CG GC TCT TTGGGT AACACGCG A T T T T T T C T T C G TG G T AC A AA G T GATTTAATCCTTAGCTAAATGCATTCATTTGTGCTGGCCAGT TG AT G T T A . . CACAAGGACTGAAAAAAAAG TACATGT AG AG A A A GT A T . A TTGT C C C G C A AAGTATAAAG A AGAGTCTCA A GCGTCGAATA GTTTTGTTA G A ATTTT C C A T A CGT CCATGC G T A C A TTG C T CCAAATCA AATTC C TG CC GCC T T G C T T TG G A C TTAA T C A A G T A CGGAGGTG T TGGCGTGGGTGGGC TTAC ATC
blockSeqs : . . . CTA . . . . . . G . . . . . . . . . A . . . T T TA . . A . A . . . . . T . A . . . . . TTTC . . . T T . . C TCT . . . . C . . . . . . . . . G . A A AC G . AACTAAATACACTCATTTGTTTTGGACAGT CA AG G . A . . . CACAAAGACAAAG . . GA T T . . . . . A TGGT C . A G C . GCATACAT . GCTCCCGA A GGTACAC ACTAT A A T . . . G . . . . T . . . GCT . . AA C . . . GC . . . . . . . T . . A T . . . . . A GGGAGGT . TCTGGGGTTGGTT . .
blockSeqs : . . . . . . . . . . G . . . . . . . . . A . . . . A A . . A . A . . . . . . . . . . . . . AAA . . . T T . . A TTG . . . . T . . . . . . . . . G . A A AC G . GATTATGCATTCATTTGCAATTGTTTTGA TC AC A . A . . . AAGACAGAAAAAA . . GA T T . . . . . G TTT C . A G C . TGTATAAG . TAATAT A GGTACAC ACTA A . . . . . G . . . . . . . . TC . . A C . . . T . . . . . . . . . . A . . . . . . A GTG . TGGGTGGGTGGG . .
blockSeqs : . . . . . . . . . . C . . . . . . . . . A . . . . A T . . . . . . . . . . . . . . . . . . TTA . . . T A . . A TCT . . . . T . . . . . . . . . G . A G A G . GATATGCATTCAATTTGCATTGTTTTGA TG AC G . C . . . TATTAG . . A G A . . . . . . . C . C G . . GATACA . ATTGT T AATCA CTT G . . . . . T . . . . . . . . T . . A C . . . T . . . . . . . . . . A . . . . . . G GTA . TTGGGGTTGG . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . A . . . . A A . . . . . . . . . . . . . . . . . . TTA . . . G A . . T TTT . . . . T . . . . . . . . . . . A G A . . GATATAATCTTCATTTGTTATGGAGT TG . . . C . . . TATAG . . G G A . . . . . T . . . GG . ATTGT T AGCA TT . . . . . . A . . . . . . . . T . . A A . . . T . . . . . . . . . . C . . . . . . A GTG . TGGGTGGG . .
blockSeqs : . . . . . . . . . . G . . . . . . . . . A . . . . A A . . . . . . . . . . . . . . . . . . CTT . . . T T . . C TTC . . . . T . . . . . . . . . . . . . . . . CAGTT . . . A . . . . . . . . C . . A A . . . T . . . . . . . . . . A . . . . . . A GG . TAGGA . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . T . . . . A C . . . . . . . . . . . . . . . . . . TGT . . . T A . . . . . . . . C . . . . . . . . . . C . . . A . . . G . . . . . . . . . . A . . . . . . G TA . GGGGT . .
blockSeqs : . . . . . . . T . . . . . . . . . A . . . . A A . . . . . . . . . . . . . . . . . . TTT . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . G GG . AGG . .
blockSeqs : . . . . . . . . . . . . . . . A . . . . A A . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . A G . GG .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ** ************ *** TTN***** A* A** TATAAGGAAAAG*************** GA******** ****** TT*** GTATAAG**** GGTACA****** GCTN****** ***** ***** GTG********* TGGGTGG***********
originalCons : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TTC----AAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AAAA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACACAC-AA-GAC---------AG------GGGAAA-------ATAAAAA--AA--------GAAGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCA-T-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAG-A-TACA---TGT-AC-ANT---GT----ATNAAG-GT---AC-A-AGTTCAAACT-T-----ATTGTTCATGC-AC-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGAGGA-----GTG----GGG-GG--TG----GGG-T-GG--TTGAATCT----CACTA---TTTTGC
finalCons : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TTC----AAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AAAATTN-----TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGAT-CA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATATA--ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAA-CCTAACTTTCACATATAAGGAAAAG---------------GGGAAA-------ATAAAAA--AAGA--------AGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGA------CCAAATAAATAGCCCAAGGCTACCCATT---TCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTAGTATAAG----TGT-AC-ANT---GT----ATNAAGGTACA------AGTTCAAGCTN------ATTGTTCATGC-AC-----TTCAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGAGGAGTG---------GGG-GGTGGGTGG-----------TTGAATCT----CACTA---TTTTGC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTATTTAACTGTTCACAAAAATCATTGGTTAGCGGGCCTTGGACAGTTTATACATCAGCAAGAGGATTGTCAATGGTCTTTAAAATACTCTGTCACGCTTATATGACGATTCTCGAGCCAGCAATATATTGGCGAGGCGATTTTTGCTTATGATAACTAGATATGTCAGAGGCTTGTCTAAGATAAGATAATTCTTGGGACATTTTTC
Unaligned ( gi|15 ): AACATCGTATCTGCGAAACCATTACAATGGACCTGCAGTGGCGACAGTATCAAGATATGTCTGCAACTTAGGGCGTTGGAGTTCATTAATGTACTGTTTACTAGAGAATAAAATGATTAGGGGCCTTGAAGTTTTAACACGTCATCAAGTAAGGTTATCAAATGTTTGTTATATT
Unaligned ( gi|21 ): TTGGAGTTCAATATGTAACTGTTCACAGAAATCATTGATTAGAGGCCTTGAACGTCTTAACATCATCAGGTCCTTTCGCGCCTGATATGACGATTTCGTCAAACCAGCAACAAATTTGGCGAGGCC
Unaligned ( gi|24 ): AGTTACATACAATCGTACTGCAACCATTACTTGCAATGGCACAGGGAAATCTCG
Unaligned ( gi|25 ): ACCTCACTATTTTGCACACACTCGGTCTTAAAAT
Unaligned ( gi|26 ): CTTAAGGTGTTTATCAAAGCTGTCTTA
Alignments
lowQualScore : 111 111 111 1 222222222222 11 111 11111111 111 6666666666666666666666666666666666666666666666666 66666666666666666666 2222222 111 11 22222 2222 111 1111111111111 333333333333333333333333333333 1 22222 111 111111 1 11111 222222222 11111 111 11111 11111 2222222 33333333333333
lowQualScore : 5 5 66 555 4 4 4 4 4 4 5 4 4 4 55 0 99999 3 3 3 3 33 77 44 3 77 3 555 3 3 111 3 2 3 333333333333 2 6666 2 888 3 6 555 2 3 3 44 3 7777 22 4 4 4 2 555 55 55 333 9999 88888888 5 5 5 5 5 5 5 5 4 0 5 77 6 5 0 5 1 2 111 6 5 0 1 0 2222222222222222222222222222222222222222222222222 33 44 3 6 1 6 6 6 2 99999999999999999999 1111111 99 55 1 1 6 99 0 6 8 6 111 5 11 3 88888 999 5 6 88 6 2 3333 222 6 6666666666666 1 777777777777777777777777777777 77 3 3 33333 6 6 6 6 6 5 000 666666 5 1 5 5 5 33333 4 4 000000000 33333 4 66 66 555 4 4 4 4 4 4 77777 8 4 4 8888 7 3 3 3 3 3 2 00000 3333333 4 777 55555555555555 8888 777
lowQualScore : . . .. ... . . . . . . . . . . .. . ..... . . . . .. .. .. . .. . ... . . ... . . . ............ . .... . ... . . ... . . . .. . .... .. . . . . ... .. .. ... .... ........ . . . . . . . . . . . .. . . . . . . ... . . . . . ................................................. .. .. . . . . . . . .................... ....... .. .. . . . .. . . . . ... . .. . ..... ... . . .. . . .... ... . ............. . .............................. .. . . ..... . . . . . . ... ...... . . . . . ..... . . ......... ..... . .. .. ... . . . . . . ..... . . . .... . . . . . . . ..... ....... . ... .............. .... ...
lowQualScore : 0 0 99 666 4 0 0 0 0 0 7 0 0 0 55 3 11111 6 6 6 6 88 99 66 3 99 5 333 3 3 555 1 3 1 555555555555 9 1111 9 555 1 2 444 9 1 1 22 1 7777 88 0 0 0 4 888 55 55 444 8888 11111111 0 0 0 0 0 0 0 0 4 4 7 99 6 7 1 7 4 4 666 6 0 1 4 2 4444444444444444444444444444444444444444444444444 11 44 0 7 0 7 7 7 8 33333333333333333333 7777777 22 22 0 0 7 22 7 7 0 0 888 0 44 2 88888 333 2 7 33 7 5 8888 333 7 8888888888888 0 000000000000000000000000000000 77 7 3 33333 7 7 7 7 6 7 000 444444 7 4 7 0 0 55555 4 4 777777777 33333 4 11 11 000 4 4 4 4 4 4 22222 9 0 0 5555 3 6 6 6 6 6 1 00000 2222222 0 000 11111111111111 5555 888
consensus : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TT----CAAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAACCT-AACTTTCACACACA-----AGG--------A-AAAGGGGAAA-------ATAAAAA--AAGAAGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGACCAAAT--AAATAGCCCAAGACTACCCAT-GTTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTA--GTATA-A-GTGT-AC-ANT---GT----ATAAAG------GT---ACA-A-GTTCAA-----GCT-TATTGTTCATGC-AC-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGA-----GGA-----GTGG-G---GGG--TGGG--T-GG--TTGAATCT----CACTA---TTTTGC
Reference ( family-4731 ) : TCATTGTGA-CATAGAA-ATACGC--A---G-ACTTT-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AT-AAT--GAAAATATTT--AGAA-G-AGTG---AA-A-TC-AAATA------------TAA-TT----CAAA-CA---A-TT-TT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTN-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--TA--T--TCATTGCT--CTTAAATTCTT---TTTAAA--------C-AG-AGTTCCA-TTCGATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGGGC-GTCT--TGGACATTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTT----TTGTTTTGG-C--GTTCAATTGAACTAATAGTAGGGCG-TAGCATCAANTGTAGCAC-AAAAACC-CGGGCCAAAACCT-AACTTTCACATATA-----AGG--------A-AAAGGGGAAA-------ATAAAAA--AAGAAGANTT-AAG--TCGTCTACG-CTTATAAATTGACGTG-TACTCAGTCGGGACCAAAT--AAATAGCCCAAGGCTACCCAT--TTCTTCA-ATGAACGGCGAGTTCACCAT-AACATCTA--GTATA-A-GTGT-AC-ANT---GT----ATNAAG------GT---ACA-A-GTTCAA-----GCT-NATTGTTCATGC-AC-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTNAATCT-T---AAT------TTTCATTT-GA-AA-TT-TTCAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTC--TGAATTAA--TA--CGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTT---AAA-T-C-CG-TT-TTC-GGCGA-----GGA-----GTGG-G---GGG--TGGG--T-GG--TTGAATCT----CACTA---TTTTGC
gi|1 : TCATTGTGG-CATAGAA-ATACGC--A---G-ACTTC-AAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGC-GT-----ATGA-TG-T-A-CACGC-AATA-TTTATTTTATC--AT-AAT--GAAATTTTTA--AGAA-G-AGTG---AA-AATC-AAATACTGGTACATGTATAA-TT----CAAA-CA---A-TT-TTGTTTTAATCT-GCT-AATATCCATTC--AA-AA----TT--TCTAG-GAAA-TCATT-TTAATTCGACGAGATGA--TA--T--TCATTGCT--CTTAAATTCCA---TTTCAA--------C-AG-GGTTTTA-TTCAACCA-AT-TA-GAA-TTC-TTGAA----------------TCT--TGATCATTTGTTG--TAAAAATG-TT---AATCAA-CG--CTTTT-A-AGATTTAA----TCCTA-AACG------AA-----------------ATGCATGC-ATTT------GTTTTGG-CCAATTCAACTTAACTAATAGTAGGGCG-TAGCATTAAATGTTGCAT-AAAAACCTCGGGCCAAAACCCCAACTTTCACACACAGACATAAA--------A-AAAGGGGGGG-------G----------GGAGGGTT-A-G--TCGTCTGTG-ATTATAAATTGACGTG-TACTCAGTCGGGACTTAGTCTAAATA----AA---TAGCC---------CA-A-----GGCTA---C-CCAT-AA----------ATA-A-AGGT-AC-A-T---GT----ACAGAGCCCCAAAT---ACT-ATGTTCAA-------T-TGTTGTTCATGC-AC-----TTTCAA-A-ATTTTCAGTAT-TCTGACTT-------T---GAT------TTTCATTT-GA-AA-TA-TTTAA-C--T--AGACTAAAATCAG-GGG-ATGAAA-------C-CATTG----CTTC-AAGTC--TGAATTAA--TA--TGAAGA-T-AAAA-CAA-CTG-TCT-CATCATGT-GGTAT-TT-CAGAATGCTT---TAA-T-C-CG-TT-TTC-GGTCA-----GAA-----GTGG-T---GGT--TGGG---------TAAATCT----CACTA---TTTTGC
gi|10 : cacatgtatgtgaaaattttgagatcgtcagtttatagtttatcaaagctgtcttaggagtatcttaagTTCACATGAACGGTGAGTTCACCAT-AAAATCTAAAGTATA-AAGTAT-AG-GCTCCCGA----ATAAAA------G-----CA-A-GTTC-------GCT-TATTGTTTAATC-ACATTTTTT-TAA-A-ATTATCTGTATACTTGGCTTTTATCT-TCGTAAT------TTTAATTT-GA-AAACT-TTCAA-C--T--AGACTAAA-------GG----------------CGT------CTTC-AAGTC--TGAATTAA--TA--TGAAGATT-AAAA-CTG-TTG-TTT-CA-----TGGGTAT-TT-CAGAATGCAT---AAATT-C-CG-TTGCTC-AGCAA-----GGA-------GG-G---GGG--T-----TAGG--ATGAATCT----CACTacacactcggtctttaaatgttatgcacatcaccaagaactgccccgaaactcccagttacatacaattgaaccattacctgcagggacgttggagttcattatgtaactgttcacagaaataattgattaggggtcttgaaaatatctaacatcatcaaggtaatcaagaggattagcaatggtc
gi|11 : ctT-AAAC-CAAT-TTGCAGAAAATCAGATTA-G-ATGTT--ATTTTTGCCAT------TGG-TACC-AACACGT-TACT-ATAATTT-ATC--AT-CAT--GAAA-TATTT-----A-G-AGTG---AACA-TC-ACA---------------AA-TTTTGCTAAA-CAT--C-TT-TT---TTAATTT-ATC-AATATCAAA-A--AATAA----TTC-CACA--AAAA-TCATT-AAAATTCAAACAGATAA--TA--C--TGATTcatgtatttttgcacacactcggtcttggaaatattatgcacatcaccaagaactgcccgaaactcccagtgtgtacatacaatcgactgcacatactgcagtggca
gi|12 : gttcataagaaatttccagtaagacatatcttaggacaatttttgagatcatcttaagattatcttcaggtgttttatcaaaggttatctgaaagaacactaaacttaaaaacctcttaaaacgtattttgacaaacaagtgTATCAAT-AGAAA-AA----AAA-TGTAG-GAAA-TCATT-TCAATTCGACAAGATGA--TA--T--TTGTTGTT--CTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTGATCA-AT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTGAATGAACTTG-TTTGCGAT-----------------TGTATAAATGCTCATC-AACGCTTGGAGAT-T--------------cattcagaattcc
gi|14 : ATGCCC---AAA-T-C-CG-TT-TTC-GGCAA-----GGA-----GTGG-G---AAG--GGGG--T-----TTGAATCT----CACTA---TTTTGCtaatcctaaatgnnnnnnnnnnnnnnnnnnnnnnnnnccgtgccactgcagtatgtgcagtcgattgtatgtac
gi|16 : gTTGATC-AACGCTTGTAGATAT--------------AATC-TTC-ATTT------GTTATGG-A--GTTCGAT------------AGGGCG-CAGCATCAATTGTAGTAC-AAAATCT-CCGGCCAAAACTT-AACTTTCACACACA-----AGGACTGAAAAA-AAAGGGGAAA-------ATAAAAA--AA-AGAAATT-AAG--TTGTCTATG-ATTATAAATTacacattaatgcacattaccaagaactgccccgaaactcccagttatatanacattaccaagaactgccccgaaactcccagatacatatacaatcgtactgcaaccattaccccagcacata
gi|17 : ttca---AA-A-TCCAAATA------------TGA-TT----CAAA-CACTTA-TT-TT---TATATCT-ATT-AATATCAAT-A--AA-AA----TTTCTCTAGCGAAA-TCATT-T-AATTCGACAAGATGA--TA--T--GCTTTGCTTCTTTAAATTC------CTAAA--------C-AGTGGTTCCA-TTCGATCA-TT-CA-GAT-TTCTTTTAACCA-GAAA-
gi|18 : ga---G-GCTTT-GAAC-CA-T-TTCCAGGAA-TGAGAT-A-G-TTATC--AAATTTGCCGT-----AAGT-TGCT-A-CACGG-TATG-ATAATT--ATC--AT-TAT--GAAAACCTTT--TGAG-G-AGTGA--AA-A-TC-AAATA------------TAA-TT----TAAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AA-A
gi|19 : A-TT----TAAA-CA---A-TT-TT---TAAATCT-ATT-AATGTCAAT-A--AA-AA----
gi|19 : ATAAAA-AGGGC-GTTT--TGGAGGTTTGTTGAATGGAAATG-TTTGCGATTAA-TATACATAT-A-CT-TATAAATCTTCATC-AACGCTTCAA----------------------CA--------------GTT-----------CAATTGAATTAATAGTAGGGCgggcgttttggaggtttgttgaatggaaatgtttgcgattaatatacatatacttataaatcttcatcaacgcttcaacagttcaattgaattaatagtagggctt
gi|2 : atttaaacaatttttaaatctattaatgtcaTCATTGTGA--ATAGAA-ATACACCAA---G-ACTTT-AAACATA-T-TTCCAG-AA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGAATGCT-A-CACGC-TATG-ATAATT--GCC--AT-AATTTAAAATTATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TT----CAAA-CA---A-TTCTT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--A-TGCATTCTTGGGTTAAAA--------TAAG-AGGTCCA-GTTGTTCC-TT-CA-GAA-TTC-TTGAACCCTGAAACAGGGCGGCCTTGTGGACAAGTGGGAAAT-GAAATG-TTTGC-ACTAACTATACATAT-A-ATGTATAAATGTTCATC-AACGCCTGGAGA--T--------------ATGCATTCAATTTGCA-TTGTTTTGA------TCAATCAA---AATA-TA-GGCGTTAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAACCT-AAC-TTCACTTAT--------------------TAGGGGAAA-------ATGAAAA--AAAGATATTT-AAAGTTCGTCTACGACTCATAAATTGACGTATTACTCAGTCGGAACC-AAT--AAATAGCCCAAGACTACCCAT--TTTCTTA-A-GAAAGGTGA-TTCA-CATAAACATCTA--GCATACA-TTGTAAC-ATT---GT----ATAAAG------GT---ACACA-GCCCAA-----ACT-ATTTATTCATGCAAC-----TT-CAA-ACATTTTCTGTAT-CCTGGC-TGAATCT-T---AAT------TTTCATTTGGG-AA-TTCTTCAA-C--TTGCGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC------TC-AAGTTTGTGAATTAT--TA--TGAGAA-T-AAAA-CAGCCTGTTCT-CA-----T-GGTACATG-TATATTGCTT---AAA-T-C-CGATT-TTC-GGCAA-----GGA------TAG-G---GGGTCTGGGGTT-GGTTTTGAATAT----CACTA---TTTTGCtt
gi|20 : TCATTGTGA-CAAAGAA-CTACGC--A---G-AGTCT-AAGC-CA-T-TTTCAGGAG-TCAGAT-A-G-TTGTC--ATTTTTATC-C-----ATGA-TGCG-A-CACTT-TATG-----------------AAT--GAAAATATTT----AA-G-AGTGA--AA-A-TC-AAAT---------------A-TT----TAAA-CA---A-TC-TT---TCAATTT-ATcacaaccactctgtcttttgaaatatattgtacatcaccaagaactgccccgaaactcccagttacattacaatcgtactgcaaccattttacctgcagtgac
gi|22 : gGA-CATAGAA-ATATGC--A---G-ACTTT-AAAC-TA-T-TTCCAGAAA-T-----------------ACCTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--ATC--AC-AAT--GAAAATATTT-----------------A-A-TC-TAATA------------TAA-TT----CAAA-c
gi|23 : AAAATCAG-GGA-ATTAAA-------A-CGTTC----CCTC-CA-TC--TGAATC--------------------A-CAT-CCA-TCT-TT-----T-GGCAT-TT-CAGAATGCTT---CAA-TCC-CG-TT-TTC-
gi|3 : ATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTTTAAAC-CA-T-TACCAGGAA-TAAGAT-ACGTTTCAC--ACATTTGCCGT-----ATGA-TGTTAA-AACGC-TATGAATAATT--ATCAAAT-AAT--GTAAATATTTAAAAAA-G-AGTGAGAAA-A-TC-AA--A------------TAA-TT-------A-TA---A--T-TT---CAAACCTCAAC-AACATTAAT-A--AA-Ataa
gi|3 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaT-TTCAA-CGCT--AGACTAGAATCAG-GGA-CTGAAA-------AACGTTCAATTCTCA-AAGTC--TGAAT-AA--TAGCCGAAGA-TTAAAA-GAG-CTG-TCT-CA-----T-CGTAT-TT-CAGAATACTT---AAA-T-CATG-TT-TC---GCGA-----GGACGGAGGTGT-G---GGG--TGGG--TGGG--TTGAACCT----CACTAATCCTTTGCccctcctaaggctaagaaattgtcatgttatgatacaatttcaacgctagactagaatcagggactgaaaaacgttcaattctcaaagtctgaataatagccgaagattaaaagagctgtctcatcgtatttcagaatacttaaatcatgtttcgcgaggacggaggtgtggggtgggtgggttgaacctcactaatcctttgcacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|4 : gccatgtttaacgaaaaaacttctaagattgtccttccccgtctttaagagaatgtttcttaaggatgaacatatcggtacgaggaaaatttaagatcatacctgtaacaagatttacttaaggtgtttatcaaagctgtcttagcagatatcctaacaactaaagacagtttttttaagccaaattgtaacataaaaatacgtactagacttttaaaccattaccaggaataagatacgtttcacacatttgccgtatgatgttaaaacgctatgaataattatcaaataatgtaaatatttaaaaaagagtgagaaaatcaaataattataatttcaaacctcaacaacattaataaaaccctcctaaggctaagaaattgtcatgttatgatacaaTCATTGTGA-CATAGAA-ATACAC--A---G-ACTTT-AAAC-TA-T-TTCCAGGAA-TGAGAT-A-G-TTCTC--ACTTTTGCCGT-----ATGA-TGCT-A-CACGC-TATG-ATAATT--GCC--AT-AAT--TAAAATATTT--AGAA-G-AGTG---AA-A-TT-AAATA------------TAA-TT----CAAA-CA---A-TT-CT---TAAATCT-ATT-AATATCAAT-A--AA-AA----TTA-TCTAG-GAAA-TCATT-TTAATTCGACAAGATGA--AA--T--TTATTCCT--ATGCAATTCTT---GTTAAA--------T-AG-AGTTCCA-TTTGTTCC-TT-CA-GAA-TTC-TTGAACCCTGAAA-AGGGC-GCCT--TGGACAATTGTTGAATGGAAATG-TTTGCGACTAA-TATACATATAA-ATGTATAAATGTTCATC-AACGCTTGGAGAT-T--------------ATGCATTC-ATTTGCAATTGTTTTGA------TCAATTCAAGTAATAGTAGGGCG-TAGCATCAAATGTAGCAC-AAAAACC-CGGACCAAAACCT-AACTTTCACTTAT---------------------AGGGGAAA-------ATAAAAA--AAG-ATATTTAAAG--TCGTCTACG-CTCATAAATTGACGTA-TACTCAGTCGGAACCAAAT--AAATAGCCCAAGACTACCCATTGTTCTTCA-ATGAAAGGTGAGTTCA-CAT-AACATCTA--G-ATA-C-ATGT-AC-ATT---GT----ATAAAG------GT---ACACA-GCCCAA-----ACTATATTATTCATGC-AC-----TT-CAACA-ATTTTCTGTAT-CCTGGCTTGAATCT-T---AAT------TTTCATTT-GG-AA-TT-TTCAA-C--T--GGACTAAAATCAG-GGG-ATGAAA-------A-CGTTC----CTTC-AAGTT--TGAATTAT--TA--TGAGAA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAC-AT-GTATATGCTT---AAA-T-C-CG-TT-TTC-GGCAA-----GGA-----GTAG-G---GGGT-TGGGGTT-GG--TTGAATAT----CACTA---TTTTGCacacactcggtcttaaaatagtaatgcatcatcactaagaacctgccacgacactcccaagttacatacaatacgtactgcaccattaccgtgcagtggcaccagcgataaatcttcgagatctcatagtaggattacaacgttcggagttcattatgtaactgttcacagaaatcattgtaaaagggaattgaaagactataacatcattaagaggattaatcaaaaggttcctaaaatattcagattatgcctgatatgcgatttcgtggacaagcaacaaatttggcgaggtcatt
gi|5 : CGT-----ATGA-TGTT-A-CACGC-TATG-TTAATT--ATC--AT-TAT--TAAAATATTT--CGAA-G-AGTG---AA-AATC-AAATA------------TAA-TT----CAAA-C---------CT---TAAATCT-ATT-AATATTAAG-A--AA-AAAAAATT---CTAG-GAAA-TCATT-TTAATTCCACAAGATGA--TA--T--TCATTGCT--TTTAAATTCTC---TTTAAA--------C-AG-AGTTCCA-TTTTATCA-TT-CA-GAA-TTC-TTGAACCATGAAA-AGAGC-GTCT--TGGACATTTATTAAAT-GAAATATTTTGCGATTAA-TATACATGT-ACATGTATAAATGTTCATCTAACCCT---AAAC-TAA------------ATACACTC-A--T----TTGTTTTGGACA-GTTCAATTGAACTAATGATAGGATG-TAGCATCAACTGTAGTAC-AAAAATT-CTGGCCAAAACCT-AATTTTCACACACA-----AAG--------ACAAAGGGGAAA-------ATAAAAA--AAGAAGAATT-AAG--TTGTCTATG-CTTATAAATTGACGTG-TATTCAATCGGGACCAAA---------------------------TCTTCA-TTGGACGGCGAGTTTGCCAT-AACATTTAT-GTATA-A-GGGT-AC-AGA---GTCTCAATTAAA------AT----CA-A-GTTCAA-------T-TATTGTTCATGCAAT-----TT-CAA-A-ATTTTCTGTAT-CCTGGCTTTAATCT-T---AAT------TTTCATTT-GA-AA-CT-TTCAA-C--C--AGACCAAAATCAG-GGG-ATGAAA-------A-CGTTT----ATTC-AAGTC--TAAATTAA--TA--TGAAGA-T-AAAA-CAG-CTG-TCT-CA-----T-GGTAT-TT-CAGAATGCTTTTAAAA-T-C-CG-TT-TTC-TGCAA-----GGA-----G-GG-A---GGG--AGG----------TGAATCT----CATTA---TTTTGC
gi|6 : TCATTGTAA-CATAAAA-ATACGT--ACTAG-ACTTT-TAAC-CA-T-TTCCAGGAA-TAAGAT-A-G-ATCAC--ACTTT-GCCGT-----ATGA-TGTT-A-AACGC-TATG-ATAATT--ATC--AT-AAT--GGAAATATCT--AGAA-G-AGTG---AA-A----A---------------------T----CAAA-TA---A-TTATT---TAAATCT-ATA-ATTTTCATT-T--GA-TA----CTT-TCCAA-GCAG-AC----TGAAATCGGCGGGATGA--AACGT--TCATTacatactgggtcttgaaatattatgcacatcactaggaactgccccgaaattcccagttacatacaatcg
gi|6 : TTAAATCTAT---AAT------TTTCATTT-GATAC-TT-TCCAA-G--C--AGACTGAAATCGGCGGG-ATGAAA---------CGTTC----ATTC-AAGTC--TGAATTAA--TA--GGAAGA-T-AAAAGAAG-CTG-TCT-CATG---T-GGTAT-TTCCAGAATGCTT----AA-T-C-CG-TT-TTT-GGTGA-----GGAGGGAGGTGG-GGGTGGG--TGGG--TGGG--TTGAACCT----CACTA---TTCTGCcaagtctgaattaataggaagataaaagaagctgtctcatgtggtatttccagaatgcttaatccgtttttggtgaggagggaggtgggggtgggtgggtgggttgaacctcactattctgcacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : tcattgtaacataaaaatacgtactagacttttaaccatttccaggaataagatagatcacactttgccgtatgatgttaaacgctatgataattatcataatggaaatatctagaagagtgaaaatcaaataattatATT--AT---AT-AAT--GAAA-TATTT--AGAAAG-AGTG---AA-AATC-AAATAATCCA-------TAACTT----CAAA-CA---A-TT-CT---TAAATCT--TT-Aacacactcggtcgttgaatatttatgcacatcactaagaactgccccgacaactcccagtttgcatacaatcgtacctgtaaccattacctgcagtggcacaggtaaatcacgaagatcttatagtagggcgttggagttcattatgtaaactgttcacagaaatcattgataaaggaattgaagactacaacatcattaagaggattatcaagggtctttaaatattcagtatgcctgatatgacgatttcgtggagccagcaacaaatttggcgaggtcattttttgccta
gi|7 : CTTAAATCT-T---TATCCATGCTTCCATTT-GATAC-TC-TTCAAAC--TC-AGACTAAAATCAG-AGGTATGAAACCAAATCA-CGTTC----ATTCCAAGTC--TGAATTTACCTAG-CGAAGA-T-AAAA-GAG-CTG-TCTTCA-----TTGGTAT-TT-CAG-ATGCTT---AAATT-C-CG-TT-TTC-GGCGAGGCGTGGA-----GTGGTG---GCG--TGGG--T-GGGCTTGAACCTTTACCATAA---TTTTGCtccatgcttccatttgatactcttcaaactcagactaaaatcagaggtatgaaaccaaatcacgttcattccaagtctgaatttacctagcgaagataaaagagctgtcttcattggtatttcagatgcttaaattccgttttcggcgaggcgtggagtggtggcgtgggtgggcttgaacctttaccataattttgcacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : attatataatgaaatatttagaaagagtgaaaatcaaataatccataacttcaaacaattAAATCT-AAT-ACTATCAAT-A--AA-AA----TGT-TGTAG-GAAAATAATT-TTAATTCATTAAGATAA--CA--T--TCATTGCC--CTTAAATTCTT---TTTAGA--------C-AG-AGTTCCA-TTTGATCA-TTTCA-GAA-TCC-TTGAACAATGGAA-AGAAT-GTCT--TGGAAATTTATTGAACGGAAGTT-TTTGCGATTAA-TATACATGT-ACAT-TATAAATGTTCATC-ATAGCTTGGAGAT-TTAATCCTTAGCTAAATGCATTC-A--T----TTGTGCTGG-CCAGTTCAATTGAACTAATAGTAAGGCG-TAG-ATCAACTGTAGCACAAAAAACC-CGGGTTGAAACGT-AACTTTCACAAAGAC----AGA--------A-AAAAGGGATATACATGTATAAAAAAGAAGAAGAATT-AAG--TTGTTTATG-CTTATAAATTGACGTG-TACTCAGTCGGGACCAAAT--AAATAGCCCAAGGCTATCCATGGTTCTTCA-ATGAATGGCGAGTTCACCAT-AACATCTA--G-------GTGT-ACTAAT---AT----ATTAAGC-----GTCGAATA-A-AATCAAGTTTTGTT-AATT-TTTATGC-ACT----TT-CAA-A-ATGTTCTGTAT-CCTGGacccacactcatattgaaaattatttatcgcacgatcacataagaactgccccaacaaaactacccagttacatacaatcgatacgcaaccgattacctgcagtggcacagcacaaactcacgaggcatctcaattacctagcggcgttggattattatgtaactgttcacacgcaaatctttgataaatgaaattgacacagactacaaatcattaaagattatccaaggttcttaaatattccgtcatcctgatatctttgacgatttccattcacgaccgcgccaacaaactttgcggaggtcatttttgcctaaataacttagatatgtcaaaggct
gi|8 : T-TT-CAAAATGTT----------C-TG-TA-TCCTGGTAA-----GGA-----G--G-G---GGG----------GG--TTGAATCT----CACTA---TTTTtaaggaggggggggttgaatctcactatttt
gi|9 : aaatctaatactatcaataaaaatgttgtaggaaaataattttaattcattaagataacattcattgcccttaaattctttttagacagagttccatttgatcatttcagaatccttgaacaatggaaagaatgtcttggaaatttattgaacggaagtttttgcgattaatatacatgtacattataaatgttcatcatagcttggagatttaatccttagctaaatgcattcatttgtgctggccagttcaattgaactaatagtaaggcgtagatcaactgtagcacaaaaaacccgggttgaaacgtaactttcacaaagacagaaaaaagggatatacatgtataaaaaagaagaagaattaagttgtttatgcttataaattgacgtgtactcagtcgggaccaaataaatagcccaaggctatccatggttcttcaatgaatggcgagttcaccataacatctaggtgtactaatatattaagcgtcgaataaaatcaagttttgttaatttttatgcacTCATTGTGATCAAAGAATATACGC--A---GCACTCG-AAGC-CA-TGTTCCAGGAA-TTA-AT-A-G-TTCTCCCACATTTGCCATTCATCATGA-TGCT-A-CAAGCCTATG-ATAATT--ATC--ATTAATT-GAAAATATTTT-AGAA-GCAGTG---AA-AATC-AAATA------------TGA-TT----CAAAACA---AATT-TT---TATATCT-ATTTAATATCAAT-A--AA-AA----TTT-TCTAG-G-AA-TCATTATTAATTCGACAAGATGATTTA--TGCTC-TTGCT---TTAAATTCTT---CTAAAAAACACGCGC-GG-CTTCCCATTTCGATCATTT-CACGAATTTC-TTTAACCATGAAA-
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCATTATTTAACTGTTCACAAAAATCATTGGTTAGCGGGCCTTGGACAGTTTATACATCAGCAAGAGGATTGTCAATGGTCTTTAAAATACTCTGTCACGCTTATATGACGATTCTCGAGCCAGCAATATATTGGCGAGGCGATTTTTGCTTATGATAACTAGATATGTCAGAGGCTTGTCTAAGATAAGATAATTCTTGGGACATTTTTC
Unaligned ( gi|15 ): AACATCGTATCTGCGAAACCATTACAATGGACCTGCAGTGGCGACAGTATCAAGATATGTCTGCAACTTAGGGCGTTGGAGTTCATTAATGTACTGTTTACTAGAGAATAAAATGATTAGGGGCCTTGAAGTTTTAACACGTCATCAAGTAAGGTTATCAAATGTTTGTTATATT
Unaligned ( gi|21 ): TTGGAGTTCAATATGTAACTGTTCACAGAAATCATTGATTAGAGGCCTTGAACGTCTTAACATCATCAGGTCCTTTCGCGCCTGATATGACGATTTCGTCAAACCAGCAACAAATTTGGCGAGGCC
Unaligned ( gi|24 ): AGTTACATACAATCGTACTGCAACCATTACTTGCAATGGCACAGGGAAATCTCG
Unaligned ( gi|25 ): ACCTCACTATTTTGCACACACTCGGTCTTAAAAT
Unaligned ( gi|26 ): CTTAAGGTGTTTATCAAAGCTGTCTTA