lowQualScore : 1111111111111111111111
lowQualScore : 1 111 999999999999999999999999999999999 222222 111 11111 11111 1111 11111111111 11111 11 2222 1 33333333 111 111111 11 11 11111 0000000000000000000000 1111 111 111 222222 111 22222 1 555555555555555555 1111111 1 1111111111 111 111 1111
lowQualScore : 5 1 000 222222222222222222222222222222222 5 0 6 999999 5 5 5 8 5 5 1 5 5 5 0 1 111 6 99 6 0 77 5 2 44444 77 5 777 5 66 0 22222 0000 66 5 3 99999999999 6 6 77777 6 6 3 99 0 8 2 6 1 77 1 11 66 5 5 0 77 3 0 66 5 66 1 888 8888 3333 5 3 5 5 5 2 11111111 5 000 5 666666 3 888 88 0 0 6 8 3 11 8 6 66666 5 5 5 5555555555555555555555 5 9999 4 333 3 2 333 6 7 5 4 66 333333 9 333 3 3 6 88 3 3 0 99999 1 2 3 3 111111111111111111 5555555 3 55 7777 3 3 66 0 8888888888 44 222 2 2 7 2 5555 2 66666666 2 2 444 2 2 2 4444 9999999 2 1 222 22 3333333 22 0000 1 4444 1 1 1 3 6666666 777777 333 1 1 1 1 44 22 9999 2 2 44
lowQualScore : . . ... ................................. . . . ...... . . . . . . . . . . . . ... . .. . . .. . . ..... .. . ... . .. . ..... .... .. . . ........... . . ..... . . . .. . . . . . .. . .. .. . . . .. . . .. . .. . ... .... .... . . . . . . ........ . ... . ...... . ... .. . . . . . .. . . ..... . . . ...................... . .... . ... . . ... . . . . .. ...... . ... . . . .. . . . ..... . . . . .................. ....... . .. .... . . .. . .......... .. ... . . . . .... . ........ . . ... . . . .... ....... . . ... .. ....... .. .... . .... . . . . ....... ...... ... . . . . .. .. .... . . ..
lowQualScore : 7 9 000 888888888888888888888888888888888 7 3 5 000000 0 0 0 9 7 7 4 7 7 7 1 7 777 7 22 7 7 99 7 7 33333 99 7 666 0 99 8 55555 6666 99 7 0 66666666666 7 7 88888 7 7 3 22 8 0 8 7 7 99 4 99 99 0 7 4 99 6 8 99 0 99 6 444 6666 4444 7 7 7 0 0 2 99999999 7 000 7 222222 5 777 55 6 8 0 0 2 88 0 7 77777 7 7 7 0000000000000000000000 7 2222 1 888 6 2 444 0 4 0 0 11 999999 0 666 6 6 5 66 6 6 4 77777 7 1 6 6 888888888888888888 1111111 6 00 8888 6 6 55 5 8888888888 22 777 9 9 4 9 7777 7 66666666 2 4 111 4 0 0 2222 2222222 0 9 888 00 9999999 55 6666 9 0000 9 9 9 8 2222222 444444 333 9 8 9 9 55 66 4444 1 1 11
consensus : CGGTTTACG-GTGAAACTGGACGATATCCTTT---GT-----------A-----TGTA----T-------TT-TACTAGAATGGTCTCTTAT----T-GGGCAAAA-C-TTGT-CAACGGC-AATGA-CAACA-AAC-TTAGCAAAA-TTATCTATATGTATG---TAC-GCAA--AT-TATCCGACAA--AG-GAAAAATAATCGACCCGTG-----GA--T-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGGNA-T-TTTA-AC-TCTATGTGGATTAAA--ACAACTGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTG-AATG-CGAAAAATATTTT-AC-ATTACTAC----NAC-GGAA-ATT---AC-AAA-A----AATCT-A-TGT-TAAGTTTAGAAC-TACAANTCACCA-CCTTC-CT-----GTT-GAAGT-AGG-CAGAT-GGA---ATAA-A-T--A-TGTAAGA-AATGAACG-C--TTCTGTA---CGTTATGCA-A-CTGTAATCA-AATTG--G---A--GATGAATTTCATTATATTTCTTGAATGTAA-GA-CATTGNG--T-AAATTGCGTA-GAGATTTTTT--GG-TATAGAATATTGTTCTGC-TCCAAA-CACC--CAA--AA--ATTTTT-GTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TG--TCT---TTTTA-T-TNTG-AAA----ATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-AT-T--ATT--AT---TGTATAT-A----TG-TA-AA-T-ACG-------TTT------C---AT-G-TA-C-C-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
Reference ( gi|3 ) : CGGTTTACG-GTGAAACTGTACGATATCCTTT---GT-----------A-----T---------------TT-TACTAGAATGGTCTCTTAT----A-GGGCAAAA-C-TTGT-CAACGGC-AATGA-TAACA-AAC-TTAGCAAAA-TTATCTATATGTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GA--T-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGGCC-T-TTTA-AC-TCTATGTGGGTTAAA--ACAATTGTTAATCAAAG-ACTACGGGATCAG-TTCC--TACAAAAAAT--GG--C-ATGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATTTA--TAGAAT-TTTTAAAACAAGTT-TTG-ACTG-CGAAAAATATTTT-AC-ATTACTAC----GGC-GAAA-ATT---AC-AAA-A----AATCT-A-TGT-AAAGTTTAGAAC-TACAAACCACCA-CCTTC-CT-----GTT-GAAGT-AGG-CAGAT-GGA---ATAAGACTGCA-TGCAAGA-AATGAACG-C--TTCTATA---CATTATACA-A-CTATAACCA-AACTG--G---T--GATGAATTTCATTTTATTTCTTGAATGTAA-GA-CATTGTG--T-AAATTGCGTA-GAGATTTTTT--GG-TAAAGAATATTGTTCTGC-TCCAAA-CACC--CAA--AA--ATTTTTTGTGAAATTA-TGTC-TTCCAA--AGACC--CT-G-TA-GTTTTACGAAA----GT----TG--TCT---TTTTA-T-TATG-AAA----ATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTACTTTGT-A-AT-T--ATT--AT---TGTATAT-A----TG-TA-AA-T-ACG-------TTT------C---AT-G-TA-C-C-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|2 : CGGTTTACG-GTGAAACTGTACGATATCCTTT---GT-----------A-----T---------------TT--ACCAGAA-GGTCTCTTAT----A-GGGCAAAAAC-TTGT-CAACGGC-AATGAATAACA-AAC-TTAGCAAAAATTATCTATATGTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GC--T-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTG-CCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGGCC-T-TTTA-AC-TCTATGTGGGTTAAA--ACAATTGTT-ATCAAAGAACTACGGGATCAG-TT-C--TACAAAAAATG-GG--C-ATGGTGATATAGTGCTAATTCTTCTAAGG--G-AG--
gi|1 : aaGGTTTACG-GTGAAACTGGACAATATCCTTT---GT-----------A-----T---------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagacattgtgtaaattccgtagagattttttggtaagaatattgttctgctccaaacacccaaaattttttgtgaaattattcttccaaagaccctggtagtttaacgaaagttgtctttttattatgaaaatcaacaatattgtctgttctccaactctttgctgttgacccctgtactttgtaattattattgtatatatgtaaatacgtttcatgtaccccatgtaccattctatggtttgagtgtaataaactgaactga
gi|4 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatatGGTTGACC-TTGAAACTGAACGATATCCTTT---GT-----------A-----TGTAACAAT-------TTGTATAAGAATGGTCTCTTAT----T-GGGCAAAT-C-TTGT--AACAGA-AATGA-TAACA-AAC-TTAATAAAA-TTATCTATATGTATGATGTAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAATTGACCCGTG-----GA--T-TT-T-A-TT--TTT-----GAAA----AGTATTT--TTGATAAG-TGTGGTTTC------T----TAAACATTTGAATCGA-GCATGGAAC-ACGGAA-T-TTTA-AC-TCTATGTGGATTACA--ACAACTGTTAATCAAAG-ACTACGAGATCAG-TTCC--CAC-AAAAAT--GG--C-Agtaacaatttttcnnnnnnnnnnnnnnnnnnnnnnnnnctttcctagaatgtccttattggcaaaacttgtcaacggccgatgatcaaaaaattagccaaataatgtatactgcaatcatgtattgatagaaaaaataattgacacatgaaaatttacgattgatatgaaaagatttttgataaactgtggctctcaaattttggattgcatggacacggcgattttactctatgtggattaaaacaattgttaatcaaagactaagatctctctacacaaaattgggcatggtgatattgctaatttctcagggagttatttataaattttaaaaacaggttttgaattgcaaaaaaattttacttactactctgaacgaaagattacaaacaaatctactgttaagtttaaactaaaatcaccactcttctgttgagtaggccagatgggaataacactgtaagatattgaacgctgtacgtcattatacacatctgtaacaaactggtgatgaatttcattttattcttgaatgtaagatcattgtgataatctgcgtagaaatgttttaggtatggaatattgttctgctccaaacaccaaataacatttgtgaaattactgtctttccaaagatcctggtacgttttaagaaagtttgttgtcttgttattatgaaaaatcaaacacatattgtctgtttctctcaaactctttgtctgcttacgaactgtacgtatacatttgtagaatcgttgcatgttaccttcatggttacattacattgttttgagtgtaataaaatgaac
gi|28 : gtaattttagcagagtctgcaaatgatttgcaggtggcgttgaatgaatttagtacctacagtaaagtatggagactgactgtaaatatcattaaaacaaaaattgtagtattttctaaaggtcaccaatccaaatgttctttcacttactatgggttatatattgaaacagccaatgaattcattatttcagatgtttgaagtcattagaaaaataagattatttgatctaccttatgactgtcagttagatttatttgataaagtagtggtacctgttttactatatgtatgtgaaatttggggttatgaaaatattgatattgaagaacgtgtccattcaaattttttaatacatacttaatttaaaaagcagtacaccaagttatatGTTTACG-GTGAAACTGGACGATATCCTTT---GT-----------A-----TGTAACAATT------TT-TACTAGAATTGTCTCTTAT----T-GGGCAAAA-C-TTGT-CAACGGC-AATGA-CAACA-AAC-TTAGCAAAA-TCATCTTTAc
gi|9 : aaacatatatttaattgaaaaagttgtactccaagttatattGTTTACGCGTGAAACTGGACGAT-TCCTTTTATGT-----------AACAATT---------------TT-TACTAGAATG--CTCTTAT----TTGGGCAAAA-C-TTGT-CAAC-GC-AATGA-C-ACAGAACTTTAGCCAAA-TT
gi|37 : aaaccacaaccccacccccaaaaaaaacaaatacaaaaaaacaaaaaaaaccgcctctgtgagcagagcgcagaaaggtatgtttggagtcattagaaaaaataagattatttgatctaccatttgacttcgttacatttattcgattaaagtagtggtgcctgtttgcatatatatgcatgtgaaaattggggtttataaaatattgatattgtaaaccgtgctatttaaaaattctaaaacaatatatttaatgaaacccaagttgtactccaagttaattattGTTTACG-GTGAAACTGGGCGATATCCTTT---TTTTATATAACAAA-----T---------------TT-TACGAGAATGATCTCATATTGCAA-ATGTAAAA-CATTGTGCAA
gi|5 : aaaggtagcacacaaagttttatTTTGTG-GTGAAACTGGACGATATCCTTT---GT-----------A-----TGTATTTTTTTTTGGTTT-TACTAGAATGGTCTCTTAT----T-GGGCAATA-C-TTGT-CAACAGC-AATGA-TAACA-AAC-TTAGCAAAA-TTATCTATATGTATG---TAC-GTAA--AT-TATCCAACAA--AG-GAAAAATAAGTGACCCATG-----GG--T-TT-T-A-TT--TTT-----TAAT----AGCATTC--TTGATCAA-TATGGGCTC------T----CTAACATTTGGATTAA-GCATTGAAC-ACAGAA-T-TTTA-AC-TTTATGTGAACTAAA--ACAACT
gi|1 : aaaaaaaaaaaaacaagagagaaaataacaccgcctttgtaagcaagcacaggaagcttgatatgtttggggtcatttagaagaaaaataaaatcttgtttgatctaaccatttgactatcaatgatatttttctttttctcgatgaaagctgtgtggtacctgttctttgtactatatatataacatgtgataatttcggggttataaataaaatagaagaacgtgtccatttaaaattttgaaaacatactagtacttaattaaaaaagtagtacacaaagttatatgt---------------TT-TCCTAGAATG-TC-CTTAT------TGGCAAAA-C-TTGT-CAACGGCCGATGA-TCAAA-AAA-TTAGCCAAA-T-----A-ATGTAT-----ACTGCAATCATGTAT-TGATA----G-AAAAAATAATTGACACATG-----AAAAT-TTACGA-TTGATAT-----GAAA----AG-ATTT--TTGATAAACTGTGGC-TC------T----CAAAT-TTTGGATTG---CATGGA-C-ACGGCG-A-TTTT-AC-TCTATGTGGATTAAA--ACAATTGTTAATCAAAG-ACTA--AGATC---TCTC--TACACAAAATTGGG--C-ATGGTGATAT--TGCTAAT--TTCTCAGG--G-AG--TTATTTA--TA-AAT-TTTAAAAACAGGTT-TTGAATTG-CAAAAAA-ATTTT-AC--TTACTACTCTGAAC-GAAAGATT---AC-AAACA----AATCT-ACTGT-TAAGTTTA-AAC-TA-AAATCACCA-CTCTT-CT-----GTT-G-AGT-AGGCCAGATGGGA---ATAACAC-----TGTAAGATATTGAACG------CTGTACGTCATTATACACATCTGTAA-CA-AACTG--G---T--GATGAATTTCATTTTA-TTCTTGAATGTAA-GATCATTGTGA-T-AATCTGCGTA-GAAATGTTTTA-GG-TATGGAATATTGTTCTGC-TCCAAA-CACC--AAA--TA--A-CATTTGTGAAATTACTGTCTTTCCAA--AGATC--CTGG-TACGTTTTAAGAAAGTTTGT----TG--TCT---TGTTA-T-TATGAAAA----ATCAAACACA------TAT-TGTCTGTTT---CTCTCAAACTCTTT-GTC-T----GCTTAC-----GA---AC-TGTAC---GT-A-------------------TACAT-T----TG-TAGAA-T--CG-------TTG------C---AT-GTTA-C-CTTCATGGTTA-CATTAC--ATTGTT-TTGAGTG-TAATAAAATGAAC
gi|32 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatatggtttacggtgaaactggacaatatcctttgtatgtaacaatttttcnnnnnnnnnnnnnnnnnnnnnnnnncGATCCCTTAT----T-GGGCGAAG-C-TTAT-CAAC----AATGA-CAACG-AAT-TAAGTACGG-CTATTTACGTGTATG---TAC-GTAA--CT-TGCACGACAA--AG-AAAGAGTAACAAATCCGTA-----AA--T-AG-T-ATTT--TAT-----ACAATTGCAGTATTT--
gi|14 : GTATG---TAC-GCGA--AT-CATCTGACAA--AG-GGAAAATAATCGACCCATG-----GA--T-TT-C-A-TT--TTT-----GAAA----AGTATTC--TTAATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGAAAC-ACGGCA-T-TTTA-AC-TCTATGTGGATTAAA--ACAACTGTTAATCAAAG-ACTACGAGATCAA-TTCC--TACAAAAATC--GG--A-A-ATTGATAT--TGCTAATTCTTCTAAGG--A-AG--TTATCTA--TAGAAT-TTCTAAAACAAATT-TTG-AATG-CGGAAAATATTTT-AC-ATTACTAC----CAC-GGAA-ATT---AC-AAA-A----TATCT-A-T
gi|12 : aATCTGACAAGAAGAGAATAAAAATCAACCCATAAGAGAGA--TATT-C-A-TA--TATAATTTGAAA----AGTATATACTTAATAAA-TGTGGACACAATACATACAACAAATAATTGGATTGAAGCATGAAACCACGGACATATTTAGACATCTA-ATGGATTAAACAACAAT-GATAATCAAGA-ACTACGAGATCAAATTCCCTTACAAAAAAT--GG--CGACGATGATAT--TGCCA-TTCT-CTAAGG--A-AAGATTATCTAAATAGAATATTCTAAAACAAATTATTG-AATGGCGGAAAATATTTT-AC-ATTACTAC----CACGGAAA-ATT---AC-AAA-T----TATCTAA-TGT-
gi|56 : c-A-TA--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGGCTC------T----CAAt
gi|36 : GATCAG-TTTA--TACAAAAGCA--GGATC-ATAGTGATAT--CATCAGTTCGTCTAGAG--G-AC--ATATTAT--TAG-AC-TTTTAAAACCA------G-AATG-TGAAAAATACTTTAAT-ATTA-TAT----GTC-AGAA-GTTTAGAC-AA
gi|16 : TCC--TCTCAAAAGT--TG--C-TCGATAATGT--TTCTGAGTTATCAAAGGTGGTAG--TGACTTT--TAGAAG-TTGTATAACAA-TT-TTG-AATA-TGAGGAATATTTG-AC-ATT-TTAC----AAA-GACA-ATT---AAGAAA-A----AAACT-A-TGTTAAAGGC-AGA-C-TGCAAGACATCG-CTTTCTCTTCCAAGCT-TAAGT-AGG-CAGAT-GGATGGATA----T----TGAAAGA-AATGAAAG-CAATAATAAA---TATTGTAT----TTGGAAGCA-GATTG--GAGAT--CATGAATGTTATTGTATT
gi|43 : AAAAAT--GA--C-AGGAGGATAT--ATCTACGTCTTCAAAAA--G-AG--TAATTCA--CAGCAT-TTTCAAAACAAAAT-TTC-AATG-TGATTAATATTAG-AC-ATTATTAC----c
gi|7 : acTCCTTCAAAGG--G-AG--TGATCTG--CGG------TTAAAAAAA----TTG-AATG-TGAGGAATATTTG-AC-ATTGTTAC----AA--GAAA-TTT---TT-GGA-A----AA-CT-T-TGT-TAAATTTAGATC-TACTATTCAACA-CCTTT-CT-----GTC-GAATT-AGG-CAGGT-GGA---GTAA---TTTA-T-TAAGA-AATGAATG-C--TTTTGTA---GGTTATGTA-A-TTGTAACCA-ATTTG--G---A--AATGAACTCCATTATATT-CTGGAATGTAA-AG-TATTGAG--C-AAATTATGCA-GAAATTTTCT--AAACATAGAAT---GTTAAGA-CCCAAA-TACT---AT--AA--ATATT--GTTAACTTA-TGTC-TTCTAG--AGATT--AT-G-TA-TCTGTAATAAA----GT----TC--TCTACGTTTTA-T-C-TA-AAATTCAATT-AACG-G------TATATTTTTG-TC---GGA-TAGATTTTTT--TC-T----GTTT-------GAC-CCC-TG------------------TT--AT---TGCGTAT-A----TG-TA-AA-T-G------------------C---AT-G-CA-C-C-TCATA--TTCCATT
gi|24 : gctcaatcgcacgtctctaggcTACTTT-GTGATTACTAC----TAC-GGAA-ATT---AC-AAA-AAAAAAATCT-A-TGT-TAAGGTTAGAAC-TACAACTCACCA-CCTTC-CT-----GCT-CAAGT-AGG-CAGAT-GGA---ATA-----GCACTGTAAGA-AATGAACG-C--TTCTGTA---CTTTATGCA-A-TTGTAATCA-AATTGTAG---CTAGAGGATTTTCCTTATA-CTCTTGAATGT---TA-TATTG------ACATTGCGTA-GAGATTTTTT--gaaaaaaacctgaagt
gi|17 : TTTAGAACATATAAATCACCAACCTTC-CT-----TTTTGAAGTTAAG-CAGAT--------TAAGA---------AAGA---T---CGAT--TTCTGTAA--CGTCATGCA---CTGTAATCAGAATTG--G---A--GATGAGTTTCATTATATT-CTTGAATGTAAAGA-TATT-TGGTT-ATAT-GCGTA-GA--TTTTTT-----TAGATAGT------CTGC-TCCAAA-CACC--CAACAAA--ATTT-----GAA--CA----C-TTCCAA--AGATC--CT-G-TG-AGTATACGAAA----GCTTGGTG--TCT---TTTTATT-TCTG-AAA----ATC-AAAA-T------TAT-TGTCT
gi|10 : -CT-----TTT-AAAGT-AGG-CAGGT-GGA---ATAACACTGTA-----AGA-AATGAAC------TATGTA---CGTTATGCA-T-ATGTAACCA-AATTG--T---A--GAATAATTTCAGTTTATTTTTT-AATATAA-GG-CATTTTG--T-GAATTGCGTC-GAGATTTTTTTAAG-TATATAATATTGTTCTGC-TCCAAA-CACC----A--AA--ACATTAGGTGAACTTA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GC----TG--TGTC--TTTTA-T-TATG--AA----ATT-AACA-A------TAT-TGTCTG-TT---TTC-CAAACTCTTT-GTC-T----GTTA-------GAC-CCC-TGTAATTTGT-A-AT-T--AAC--AC---TGTATAT-A----TG-TA-AA-T-ACG-------TTT------C---AT-G-TA-CGT-CTACG--T----TTAC--A-TGGT-TTGAGTG-TAATAAACTGAACTa
gi|13 : T-GAAGT-AGG-CAGAT---------------------TAAGA-AAGGAGCG-A--TTCTGTA---CGTCATGCA-A-CTGTAATCA-AATTG--G---A--GATGAGTGTCATTATA-TTCTTGAATGTAA-GA-TATTGGG--T-ATATTGCGTA-GAATTTTTTT-----TAGA------TACTCTGCTTCCAAA-CACCAACAA--AA------TTTGTGAA--CA----C-TTCCAA--AGATC--TT-G-TA-GTATTACGAAA----GTTG--TG--TCT---TTTTA-T-TTTG-AAA----ATC-AACA-T------TAT-TGTCTA-TT---CTC-CAAATTTCTT-GTC-T----GTTT-------GAA-CCC-TGTGATGTGT-A-AT-T--ATTAAATAAATGTATAT-A----TG-TA-AA-T-ACG-------CTT------C---AT-G-TA-C-C-TCATG--TACC
gi|35 : --TTCTGTA---CGTTATGCA-A-CTGTAATCA-AATGG--G---A--GATGAATTTTA--TTATATCTTGAATGTAA-GA-TATTGGG--TAAAATTGCATACAAGATTTTTTA-GA-TGTAGAATATTGTTCTGC-CCCAAA-CACg
gi|11 : gaTG--G---A--GATGAATTTCATTACATT-CTTGAATGCAA-GA-CATTGGG--T-
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtctTCATTATATT-CTTGAATGCAA-GA-CATTGGG--T-AAACTGCGTA-GAGATcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|2 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggTAA-GA-CATTGTG--T-AAATTCCGTA-GAGATTTTTT--GG-TAA-GAATATTGTTCTGC-TCCAAA-CACC--CAA--AA---TTTTTTGTGAAATTA-T-TC-TTCCAA--AGACC--CT-GGTA-GTTTAACGAAA----GT----TG--TCT---TTTTA-T-TATG-AAA----ATC-AACA-A------TAT-TGTCTG-TT---CTC-CAA-CTCTTT-G-C-T----GTT--------GAC-CCC-TGTACTTTGT-A-AT-T--ATT--AT---TGTATAT-A----TG-TA-AA-T-ACG-------TTT------C---AT-G-TA-C-C-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|19 : aacggtttacggtgaaactgtacgatatcctttgtatttaccagaaggtctcttatagggcaaaaacttgtcaacggcaatgaataacaaacttagcaaaaattatctatatgtatgtacgcaaattatctgacaaaggaaaaataactgacccatggctttcatttatgaaaagtatttttgataaatgtgcctctcaaacatttggattgagcatggaacacggccttttaactctatgtgggttaaaacaattgttatcaaagaactacgggatcagttctacaaaaaatgggcatggtgatatagtgctaattcttctaagggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-GA-CATTGTG--T-AAATTGCGTT-GAAATTTTA---GA-TATAGAATATTGTTCTGC-TCCAAA-CA------------------------------TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TG--TGTAT-TTTTA-T-TACG-AAA----ATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTTTTT-GTC-T----GTTT-------GAC-CCT-TTTATTTTGT-A-AT-T--ATT--AA---TGTGTAT-A----TG-TA-AA-T-ACG-------TTT------C---AT-G-TA-C-C-TCACG--TACCACTCC--A-TGGT-TTGAGTG-TAATAAACTGAAC
gi|20 : TTGCGTA-GAGAATTTTT--AGATATAGAATATTGTTTTGT-CCAAAA-TACC--AAA--AACAATT----GTGAACGCG-TGTC-CTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TGAGTAT---TTTTA-T-TTTG-AAA----ATC-GACA-A------TAC-TGTCT--TT---CTC-CTAACTCTTT-GTC-T----GGTT-------GGC-CTC-TGTAATTCGT-A-AT-T--ATT--AA---TG--TAC-C----GG-TA-TA-T-ACG-------TTT------TAAAAT-G-TA-C-C-TCATA--TACCATTCC-------------------ATAAACTGAACTG
gi|22 : GAATACTGTTCTGC---CAAA-AATT--CAA--AA--AAT----GTGCAATCT-TGTC-TTTTAATTAGATTTTCT-G-TC--TCTTAAGAAA----------------------TTA-GATATG-A-------TT-AA----------TAT-TATCAG-TT---CTC-CAGATGCCCG-CTT-T----ATTT-------GAT-------TA--TTGT-A-TA-T--ACT--ACA--TGTA-GT-A----TG-TA-AA-T-ACACAGTATATTT------T---AT-G-GA-C-A-CCATG--TACCTTTCC--A-TGTT-TCGA
gi|25 : ATTGTTCTGC-TCCAAAATACC--AAC--AA--GTTTTT---GAACTCA-TGTC-TTCCAA--AGAG----T-G-TA-GTTTTAAGAAA----TTG---TG--TCT---TTTTA-T-TTTG-AAA----ATC-AACA-A------TAT-TTTCTG-TT---TGC-CAAACTCTGG-GTC-T----GTTT-------GAC-CCC-TGTAATTTG--A-AT-T--ATT--AA---AATATAT-A----TG-TA-AA-T-ACA-------TTT------C---AT-G-Tttcaaaagtgttgtagaccacagcagtggta
gi|29 : ttttagatgatatgaGAACTCA-TATC-TTCCAA--AGATC--TT-G-TA---TCTG---------------TG--TCT---TTTTA-T-TTTG-AAA----CTC-AACA-A------TAT-TGTCTG-TT---CT----AACTCTTTAATA-T----G--T-------AAC-CCC-TGTA------------------------------AT-A----TG-TA-AA-T-ACG-------TTT------C---AT-A-CA-C-C-TCAGG--TACCATTCC--A-TGGC-TTGAGTG-TGATAAACTG
gi|27 : ----TG--TCT---TTTTA-T-TATG-AAA----ATC-AACA-AATTGAATAT-TGTCTG-TTAATCTC-CAAACTCG---GTC-T----GTTT-------GAT-CCT-TGTAATATGT-A-AT-T--ATT--AT---TATATAT-AATTATG-TA-AAAT-ACG-------TTT------C---AT-G-TG-C-C-TCGTG--TACCATTAC--G-TAGC-GTGAGTG-TAATAAACTGAA
gi|38 : ----TG--TAT---GTTTA-T-TTTG-AAA----ATC-AATA-A------TAT-TGTCTA-TT---ATC-CTGATTTTTC-ATC-T----GTTT-------TAC-CCCATGTA--TTGC-A-TA-T--ACT--AT---
gi|34 : aactgTA-T-TTTG-AAG----ATT-AATA-T------TAT-TGCCTG-TT---C-----ATCTCCTT-TAC-TTTTAATTT-------GCC-CCT-TATGCT-----A-AT---------------GT---T-A----TG-TA-AA-T-ATC-------TCT------T----T-G-TA-A-C-TTATG--TACCATCCC--A-TGAT-TTTGATA-GAATAAACTGAACTGacagttaacgcatatcac
gi|45 : AA----ATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACGCT---GTC-T----GTTT-------GAT-CCC-TGTAATATGT-A-AT-T--ATT--AT---TACATAT-A----TG-TA-AA-T-ACG-------TTT------T---AT-G-TG-C-C-TC
gi|11 : ACC-A------CAT-TGTCTG-TT---CTC-CTAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTAATTTGT-A-AA-T--ATT--AT---GATATATAA----TG-TA-AT-TAATG-------TTT------C---AT-G-TACC-C-CCATT--TA-CATTCC--A-TGGT-TTGAGTG-TAATAAACTGA
gi|33 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggtcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA-A------TAT-TGTCTG-TT---CTC-CAAACCCTTT-GTC-T----GCTT-------GAC-CCC-TGCAATTTGT-A-AT-T--ATT--AT---TGTATAT-A----TG-TA-AA-T-ACG-------TTTCATGTAC---AT-G-TA-C-C-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGA
gi|30 : ------TAT-TGTCTA-TT---CTC-CTAATTCCCT-GTCTT----GTTCTATGAAAGAC-CCT-GGTGATGTGT-A-AA-TAAATG--AT---TATACG--A----TGTTA-AA-TGACG-------CTC------A---ATGG-TA-C-C-TCATG--TACCATTACAAA-TGGTATTGAATGCTACTAAGCTGAACc
gi|31 : atAACTCTTT-GT---------TT-------GAC-CCC-TGTATTTTGC-A-AT-T--GTT--AA---TGTATAT-A----TG-TA-AA-T-ACG-------TTT------C---AT-G-TA-----CCATG---------CT--A-GGGT-TTGAGTG-TAATTAACTGAATTG
gi|44 : tcttttaaaataagaagtatatttgttacatcgaatccttctttCTCTTT-GTC-T----GCTT-------GACGACC-TGTACTT------------------------TATAT-T----TG-TA-AA-T-ACG-------TTT------C---AT-G-TA-C-C-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGAACTG
gi|41 : TT-GTC-T----GTGT-------GAC-CCT-TTTATTTTGA-A-TT-T--ATT--AA---TGTGTAT-A----TG-TA-AA-T-ACG-------TGT------C---AT-G-TA-C-C-TCATG--TGC--TTC---A-TGGT-TTGAGTG-TGATTAATTGAACTG
gi|47 : -TATATTATGT-AGATAT--ATT--AT---TATGTAT-A----TT-TG-TA-T-TCA-------TTTA-----T---AT-G-TT-C-C-TCATG--TACCAGTAT--A-TGGT-TTGAGCG--AATAAATTGAACT
gi|51 : TGTGA-AT-T--ATT--AAA--TGTATAT-A----TG-TA-AA-A-ACG-------TTT------C---AT-G---------------TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTta
gi|55 : -TA-C-C-TCATG--TACCATTGC--A-TGGT-TTGAGTA-----GAACTGAA
gi|54 : aATG--TACCATTAT--A-AGGT-TTGAGCG--AATAAACTGAAa
17 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TGAATGGTGTATCCACCAATGTGGATTTTTTTTCAGCTGTAATGTAGGTGTGCGGCAAGGTGAATATTTGTTCCCATTTTTATTCTCTATGTATATTAATGATCTGGGGCAATATCTGTTAGAGAAAAAATATAATTGGAGGATGAACTTTTTTATGTTCTTTTTATGCCAATGATACTGTCATTCTGGCTGAAACGGCTGACGAATTATACATGTATATGTATCTTTGAGTGAATTTTGTTTATATTGTGAACAATGGATGTTGAACGTTGATATTAGTAAGACAAAAATATTAGGGTGTTTTTCTGAAAGGCCCAATGCTGAAAAGAGAATTAATTTTTTTTCAATAACACTGTTAAAGAAAATGCAAAAGAATTTAAAAACCTGGGATTTTTTCCCCCGCTCAAGTTCATTTGGCAAAGCTAAAAAAGATCTTTGTGAACAGGCAGTGTATGGATCGAGTTAGTAGAAAAAGTTACCTATCGACTGCCTGTCAATATTTAT
Unaligned ( gi|8 ): AATGTATTGTGTTCGTCAAGGATGACAAACCTATCCCTGTTTGTTTTTTATTAATATGATGCAATTGACTATTAAGAGACAAAAATCATTTACTGGGTCTTACAACAATATTGCCGGAGGAGTATGCCAAAAAGAATATTTTTATATGATTTATGCAAGCCGATGGCACGACAGTTAATTTTAAGCAGAATCTGGCAAATTAGTTTGCAGGTTAGCAATGCGTTGAAGTGAAATTAGATACCTACCTGCAAACTGGCTTGCGAATACTTACTGCGAATATTTAGACTAAAACAAAAATTGTAGTATTTTCTATAGGTTGACAACCCAAACTGCTCTTTCACCATAATAATGGATTACTATGTCTTGAAACAGGACAATGTATTTTCAATTATTCAAAAAAAAAAAA
Unaligned ( gi|15 ): GTCCGGGTCCTTTCGTAGATCAAAGAAGTATTTAACTGAATTAATGTACGAGATAATTAAAAAAAAAATCCGGTTGTATGATTTATCAATTGAATGTCAATTAGATTTATTTGATAAGGTTGTTGTACCAGTTTTATTGTATGCATTTGAAACATGGGGCTATGAAACCAATGAGATTATTGAGCTCCTGTACATCTAAGAGTTCTCAAACACATTTTTAAACCTTAAGAGCAGTACACCTAGTTTCATGGTGTACGGCGATACAGGCAGATAACCATTTTA
Unaligned ( gi|18 ): CATTATTTTCTGTAGATCAGGTTCTATTTAGAAAGCAAAGATCACTTGAGTGCCCAATCCGAAATAGCAATGTATATTGTGATAAGAAAAATTAGACAATTTAATTCACCTGTTGGCTGTCAGTTTTATGTGTGCAATGAGTTGGTCGTGCCAGCTTTGTTCTATGGTTGTGAAATTTGGGTTTTGAAAAACTCGATATTATTAATGGAGTACATCTTAATTAAATTTCTAACGGGCATGTTTTTAATTTAAAAAGCAGT
Unaligned ( gi|21 ): GAACAAGCATCAAAAGCTCTTTATGGTGTATTACGTAAGATTCGTTATTTCAATTTGGCTAAAATTGTCAGTTAGACTTGTTTGATAAAGTAAATCACCCAATTTTACTTTACTCTTGTGAAATTTGGGGTTATGAGAAAATGGACATTATTGAAAAAGTACACCTTAAATTTGTTTTAATTTATCTTGAATCTTAAGTCAAGTACCCCGAATTCTATGGTGTATGGGGA
Unaligned ( gi|23 ): GTCCTTTTGTAAGGCAAAGGAAGCATTAGCTGCACAAGCTCAGAAAAGCAATGTACGGATACATTAAAAAAAATCCCGATTTGGTCGATTGGCGTTTATTTTATGCATAAGGTTCGTTGTTTCCAGTTTTACTGTATGCATGTGAAAATATGCGGGCTATGAAAACTATTGATATTATTGAGCGCGTGCATTTGAGATTTCTAAAAACACATTTTTTAAA
Unaligned ( gi|26 ): ACAAAAATATTACTGGTCTTACAACAATATTGCCGAGAGTATGCAAAAAGAATTATTTTTATATATTTTATGCAGATGGCACAGTAATTTTAGCAGAATCTGCAAATTATTTGCAGGTAGCGTTGAGTGAATTTAGTACCTACTGCAAACTGGTTGGAAACTTACTGCGAATATTAGTAAAAC
Unaligned ( gi|39 ): TTAATTGGACGATTGTATATCGGTTTGATTTCTTTGATAAGTTGGTCATACCGTTTATACTCTACTGCTGTGAGAATTTGGATTTTCAAAAAATCGATATCATT
Unaligned ( gi|40 ): AAACCAACACCCCCCCCCCAAAAAAAACAAATACAAAAAAAAAAAACCGCCTCTGTGAGCAAGCGCAGAAAGGTATGTTTGGAGTCATTAGAAAAATAAGATT
Unaligned ( gi|42 ): AAATTGTAATGAATAAAGTATTGTTTAACACTACCATGCTACTTTATGGTTGTGAATTTGGGGTTACGAAAACATAGATATTATTGAACGAGTACATTTAA
Unaligned ( gi|46 ): ATGGAACATTAATTGAAAAAGTACATCTTAAACTTTTTGAAGATTTATTTTGGATTTTAAAAAGTAAGGCGGAATTTATGGTTGTATGGGGA
Unaligned ( gi|48 ): TTGTGTAAATACATGTAGTATGTACACATTCCAAGTACAATTTATGCACACTATGCATTCCTTTCTATTGTAAACCACAGGCGGTA
Unaligned ( gi|49 ): TCATTAGAAAAATAAAATTGTTTGATCTACCATTTGACTATCAGTGAGATTTTTTCGATAAAGCTGTGGTACCTGTTTTACTAT
Unaligned ( gi|50 ): AAATACATTTTTAAAAACCTTTAAAACAGTCCACTAGTTTCATGGTGTACGTCGAAACAGGTAGATATTCACTGT
Unaligned ( gi|52 ): GTCCATTTAAAATTTTTAAAACATATTTAATTTAAGAAGTAGTACACCAAGTTATATGGTTTACGG
Unaligned ( gi|53 ): TTTAACTGCAATAATGGTGTTCACCAAGGAGGAAACGTATCCCTGTTGGTTTTTTTT
Unaligned ( gi|57 ): GCACATACATTAATATACAGTTAACGCATATCACTGAG
Alignments
lowQualScore : 55555555555 22222222222 1 111 11111 11111 11111111111 11 11 11111 111 111111 11111 44444444444444444444 111 2 111111 2222222 1111111111 111 1111
lowQualScore : 5 66 1 55555555555 4 11111111111 4 4 9999 4 4 4 6 5 0 5 5 5 0 000 5 77 5 6 66 5 3 2 22222 66 5 555 4 66 11111 9999 66 5 5 66666666666 5 5 22 5 5 5 77 6 5 0 66 0 00 66 4 2 66 2 66 4 66 0 4 66 2 5 7 55 5 5 4 4 0 00000 5 5 333 222222 666 6 1 1 6 5 5 44444 5 5 44444444444444444444 4 111 4 777 6666 5 4 55 55 777 0 0 3 3 4 3 3 3 33 777777 11 3 3 3 555 55 0000000 8 3 3 44 44 3 3 55 3 5555555555 33 111 2 1 2 5555 2 2 666666 2 2 333 2 1 1 4444 8888888 1 1 4 2 1 5555 22 22 0000 1 3333 1 1 1 3 5555555 777777 333 1 1 1 1 22 2 22 2 2 33
lowQualScore : . .. . ........... . ........... . . .... . . . . . . . . . . ... . .. . . .. . . . ..... .. . ... . .. ..... .... .. . . ........... . . .. . . . .. . . . .. . .. .. . . .. . .. . .. . . .. . . . .. . . . . . ..... . . ... ...... ... . . . . . . ..... . . .................... . ... . ... .... . . .. .. ... . . . . . . . . .. ...... .. . . . ... .. ....... . . . .. .. . . .. . .......... .. ... . . . .... . . ...... . . ... . . . .... ....... . . . . . .... .. .. .... . .... . . . . ....... ...... ... . . . . .. . .. . . ..
lowQualScore : 0 99 4 88888888888 4 11111111111 7 4 4444 4 4 4 5 0 0 0 0 0 1 000 7 99 7 2 99 0 1 0 55555 99 0 444 4 11 11111 4444 11 0 9 00000000000 7 7 44 7 7 7 99 7 7 2 99 1 66 11 4 7 99 0 11 4 11 2 2 99 0 0 0 11 0 0 4 4 9 44444 0 0 888 666666 111 7 0 0 7 7 7 33333 0 0 66666666666666666666 4 222 0 000 5555 2 0 55 55 000 3 4 6 6 5 6 6 3 66 777777 33 3 3 8 555 00 9999999 8 3 3 66 66 3 3 11 1 8888888888 99 888 7 9 7 3333 5 2 111111 1 2 999 2 9 9 0000 8888888 9 8 0 7 8 7777 55 55 7777 8 9999 8 8 8 6 9999999 000000 222 8 7 8 8 55 1 88 0 0 44
consensus : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGT-----AACAA-TTT-T-----------ACTAGAATGGTCTCTTATT-G----GGCAAAA-C-TTGT-CAACGGC-AATGA-CAACA-AAC-TTAGCAAAA-TTATCTATATGTATG---TAC-GCAA--AT-TATCCGACAA--AG-GAAAAATAACCGACCCATG-----GA--T-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGGC-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---ACAAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAAT-AA----NN-N-TGTAAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATATTTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-AT-T--ATT--AN---TGTATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
Reference ( family-473 ) : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGT-----A-----TTT-T-----------ACTAGAATGGTCTCTTATT-G----GGCAAAA-C-TTGT-CAACGGC-AATGA-CAACA-AAC-TTAGCAAAA-TTATCTATATGTATG---TAC-GCAA--AT-TATCCGACAA--AG-GAAAAATAATCGACCCGTG-----GA--T-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGGN-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----NACGG-AA-ATT---ACAAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAAT-AA----AT-A-TGTAAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAATCA-AATTG--G--AG---ATGAATTTCATTATATTTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-AT-T--ATT--AT---TGTATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|1 : GGTTTACG-GTGAAACTGGACAATATCC--TTTGTATGTAACA-A-----TTT-T-----------
gi|1 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatatTT-T-----------CCTAGAATG-TC-CTTATT-G----G-CAAAA-C-TTGT-CAACGGCCGATGATCAAAA-AA--TTAGCCAAA-T-----A-ATGTAT-----ACTGCAATCATGTATT-GATA----G-AAAAAATAATTGACACATG-----AAAAT-TTACGA-TTGATAT-----GAAA----AG-ATTT--TTGATAAACTGTGG-CTC------T----CAAAT-TTTGGATTG---CATGGA-C-ACGGCGAT-TTTA--C-TCTATGTGGATTAAAACAAT--TGTTAATCAAAG-ACTA--AGATC---TCTC--TACACAAAATTGGG--C-ATGGTGATAT--TGCTAAT--TTCTCAGG--G-AG--TTATTTA--TA-AAT-TTTAAAAACAGGTT-TTGAATTG-CAAAAAA-ATTTT-AC--TTACTACTCTGAACGA-AAGATT---ACAAACA----AATCT-ACTGTTAAGTTTA-AAC-TA-AAATCACC-ACTCTT-C-T-----GTTG-AG-TAGGCCAGATGGGAAT-AA----CA-C-TGTAAGATATTGAACG----CTGT-ACGTCATTATACACATCTGTAA-CA-AACTG--G--TG---ATGAATTTCATTTTA-TTCTTGAATGT-AAGATCATTGTGAT-AATCTGCGTA-GAA-ATGTTT---TA-GGTATGGAATATTGTTCTGC-TCCAAA-CACC--AA--ATAA-CATTTGTGAAATTACTGTCTTTCCAA--AGATC--CTGG-TACGTTTTAAGAAAGTTTGT----T--GTCT---TGTTA-TTATGAAA----AATCAAACACA------TAT-TGTCTGTTT---CTCTCAAACTCTTT-GTC-T----GCTTAC-----GA---AC-TGTAC---GT-A-------------------TACAT-T----TG-TAGAA-T--C-------GTTG------C---AT-GTTA-CCTTCATGGTTA-CATTAC--ATTGTT-TTGAGTG-TAATAAAATGAACtcnnnnnnnnnnnnnnnnnnnnnnnnnctttcctagaatgtccttattggcaaaacttgtcaacggccgatgatcaaaaaattagccaaataatgtatactgcaatcatgtattgatagaaaaaataattgacacatgaaaatttacgattgatatgaaaagatttttgataaactgtggctctcaaattttggattgcatggacacggcgattttactctatgtggattaaaacaattgttaatcaaagactaagatctctctacacaaaattgggcatggtgatattgctaatttctcagggagttatttataaattttaaaaacaggttttgaattgcaaaaaaattttacttactactctgaacgaaagattacaaacaaatctactgttaagtttaaactaaaatcaccactcttctgttgagtaggccagatgggaataacactgtaagatattgaacgctgtacgtcattatacacatctgtaacaaactggtgatgaatttcattttattcttgaatgtaagatcattgtgataatctgcgtagaaatgttttaggtatggaatattgttctgctccaaacaccaaataacatttgtgaaattactgtctttccaaagatcctggtacgttttaagaaagtttgttgtcttgttattatgaaaaatcaaacacatattgtctgtttctctcaaactctttgtctgcttacgaactgtacgtatacatttgtagaatcgttgcatgttaccttcatggttacattacattgttttgagtgtaataaaatgaac
gi|10 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatatggtttacggtgaaactggacaatatcctttgtatgtaacaatttttcnnnnnnnnnnnnnnnnnnnnnnnnnc-C-T-----TTTAAAG-TAGG-CAGGT-GGAAT-AA----CA-C-TGTAAGA-AATGAAC----TATGT-ACG---TTATGCA-T-ATGTAACCA-AATTG--T--AG---AATAATTTCAGTTTATTTTTT-AATAT-AAGG-CATTTTG-T-GAATTGCGTC-GAG-ATTTTT---TTAAGTATATAATATTGTTCTGC-TCCAAA-CACC--AA--AACA-TTAG-GTGAACTTA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GC----T--GTGTC--TTTTA-TTATG--A----AATT-AACA-A------TAT-TGTCTG-TT---TTC-CAAACTCTTT-GTC-T----GTTA-------GAC-CCC-TGTAATTTGT-A-AT-T--AAC--AC---TGTATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CG-TC-----TACGTTTAC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|11 : AGAT-GAGATCAA----GT-G-TCTTGGA-GATGAAT---TTCATT-ACA---TTCTTGA-A--TGCAAG-A-CATTG--G--G-----------TCATTATATT-CTTGAATGC-AAGA-CATTGGG-T-AAACTGCGTA-GAG-AT
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaACC-A------CAT-TGTCTG-TT---CTC-CTAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTAATTTGT-A-AA-T--ATT--AT---GATATATAA----TG-TA-AT-TAAT-------GTTT------C---AT-G-TACCC-CCATT--TA-CATTCC--A-TGGT-TTGAGTG-TAATAAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|12 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggtcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCTGACAAGAAGAGAATAAAAATCAACCCATAAGAGAGA--TATT-C-A-TA--TATAATTTGAAA----AGTATATACTTAATAAA-TGTGGACACAATACATACAACAAATAATTGGATTGAAGCATGAAACCACGGACATATTTAGACATCTA-ATGGATTAAA-CAACAATGATAATCAAGA-ACTACGAGATCAAATTCCCTTACAAAAAAT--GG--CGACGATGATAT--TGCCA-TTCT-CTAAGG--A-AAGATTATCTAAATAGAATATTCTAAAACAAATTATTGAA-TGGCGGAAAATATTTT-AC-ATTACTAC----CACGGAAA-ATT---ACAAA-T----TATCTAA-TGTT
gi|13 : cTGAAG-TAGG-CAGAT--------------------TAAGA-AAGGAGCG-ATTCTGT-ACG---TCATGCA-A-CTGTAATCA-AATTG--G--AG---ATGAGTGTCATTATA-TTCTTGAATGT-AAGA-TATTGGG-T-ATATTGCGTA-GA--ATTTTT---T----T-TAGA----TACTCTGCTTCCAAA-CACCAACA--AAA----TTTGTGAA--CA----C-TTCCAA--AGATC--TT-G-TA-GTATTACGAAA----GTTG--T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-T------TAT-TGTCTA-TT---CTC-CAAATTTCTT-GTC-T----GTTT-------GAA-CCC-TGTGATGTGT-A-AT-T--ATTAAATAAATGTATAT-A----TG-TA-AA-T-AC-------GCTT------C---AT-G-TA-CC-TCATG--TACC
gi|14 : GTATG---TAC-GCGA--AT-CATCTGACAA--AG-GGAAAATAATCGACCCATG-----GA--T-TT-C-A-TT--TTT-----GAAA----AGTATTC--TTAATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGAAAC-ACGGC-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAA-TTCC--TACAAAAATC--GG----AAATTGATAT--TGCTAATTCTTCTAAGG--A-AG--TTATCTA--TAGAAT-TTCTAAAACAAATT-TTGAA-TG-CGGAAAATATTTT-AC-ATTACTAC----CACGG-AA-ATT---ACAAA-A----TATCT-A-Tg
gi|16 : aTCC--TCTCAAAAGT--TG--C-TCGATAATGT--TTCTGAGTTATCAAAGGTGGTAG--TGACTTT--TAGAAG-TTGTATAACAA-TT-TTGAA-TA-TGAGGAATATTTG-AC-ATT-TTAC----AAAGA-CA-ATTA--AGAAA-A----AAACT-A-TGTTAAAGGCAG-AC-TGCAAGACATC-GCTTTCTC-TTCCAAGCTTAAG-TAGG-CAGAT-GG-AT-GG----AT-ATTGAAAGA-AATGAAAG-CAATAAT-AAA---TATTGTA-T-TTGGAAGCA-GATTG--G--AGATCATGAATGTTATTGTATT
gi|17 : TTTAGAACATATAAATCACCAACCTTC-CTT-----TTTGAAGTTAAG-CAGAT--------------------TAAGA-AA-GATCGATTTCTGTAACG---TCATGC--A-CTGTAATCAGAATTG--G--AG---ATGAGTTTCATTATA-TTCTTGAATGTAAAGA-TATTTGG-T-TATATGCGTA-GAT--TTTTT---T--AG-ATAG--------TCTGC-TCCAAA-CACC--CAACAAAA-TT----TGAA--CA----C-TTCCAA--AGATC--CT-G-TG-AGTATACGAAA----GCTTGGT--GTCT---TTTTATTTCTG-AA----AATC-AAAA-T------TAT-TGTCTc
gi|19 : -AAGA-CATTGTG-T-AAATTGCGTT-GAA-ATTTTA------GATATAGAATATTGTTCTGC-TCCAAA-CA----------------------------TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTGTAT-TTTTA-TTACG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTTTTT-GTC-T----GTTT-------GAC-CCT-TTTATTTTGT-A-AT-T--ATT--AA---TGTGTAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCACG--TACCACTCC--A-TGGT-TTGAGTG-TAATAAACTGAACa
gi|2 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT---------------T-T-----------ACCAGAA-GGTCTCTTATA-G----GGCAAAAAC-TTGT-CAACGGC-AATGAATAACA-AAC-TTAGCAAAAATTATCTATATGTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GC--T-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGT-GCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGGC-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTT-ATCAAAGAACTACGGGATCAG-TT-C--TACAAAAAATG-GG--C-ATGGTGATATAGTGCTAATTCTTCTAAGG--G-AG--
gi|2 : aaT-AAGA-CATTGTG-T-AAATTCCGTA-GAG-ATTTTT---T--GGTA-AGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAT-TTTTTGTGAAATTA-T-TC-TTCCAA--AGACC--CT-GGTA-GTTTAACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAA-CTCTTT-G-C-T----GTT--------GAC-CCC-TGTACTTTGT-A-AT-T--ATT--AT---TGTATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagacattgtgtaaattccgtagagattttttggtaagaatattgttctgctccaaacacccaaaattttttgtgaaattattcttccaaagaccctggtagtttaacgaaagttgtctttttattatgaaaatcaacaatattgtctgttctccaactctttgctgttgacccctgtactttgtaattattattgtatatatgtaaatacgtttcatgtaccccatgtaccattctatggtttgagtgtaataaactgaactga
gi|20 : aacggtttacggtgaaactgtacgatatcctttgtatttaccagaaggtctcttatagggcaaaaacttgtcaacggcaatgaataacaaacttagcaaaaattatctatatgtatgtacgcaaattatctgacaaaggaaaaataactgacccatggctttcatttatgaaaagtatttttgataaatgtgcctctcaaacatttggattgagcatggaacacggccttttaactctatgtgggttaaaacaattgttatcaaagaactacgggatcagttctacaaaaaatgggcatggtgatatagtgctaattcttctaagggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGCGTA-GAGAATTTTT---A--GATATAGAATATTGTTTTGT-CCAAAA-TA-C--CA--AAAA-CAATTGTGAACGCG-TGTC-CTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TGAGTAT---TTTTA-TTTTG-AA----AATC-GACA-A------TAC-TGTCT--TT---CTC-CTAACTCTTT-GTC-T----GGTT-------GGC-CTC-TGTAATTCGT-A-AT-T--ATT--AA---TG--TAC-C----GG-TA-TA-T-AC-------GTTT------TAAAAT-G-TA-CC-TCATA--TACCATTCC-------------------ATAAACTGAACTG
gi|22 : GAATACTGTTCTGC---CAAA-AATT--CA--AAAA-AT---GTGCAATCT-TGTC-TTTTAATTAGATTTTCT-G-TC--TCTTAAGAAA----------------------TTA-------GA----TATG-ATTA-A------TAT-TATCAG-TT---CTC-CAGATGCCCG-CTT-T----ATTT-------GAT-------TATTGTAT-A----T--ACT--ACA--TGTA-GT-A----TG-TA-AA-T-ACACAGTATATTT------T---AT-G-GA-CA-CCATG--TACCTTTCC--A-TGTT-TCGA
gi|24 : TACTTT-GTGATTACTAC----TACGG-AA-ATT---ACAAA-AAAAAAATCT-A-TGTTAAGGTTAGAAC-TACAACTCACC-ACCTTC-C-T-----GCTCAAG-TAGG-CAGAT-GGAAT-AG----CA-C-TGTAAGA-AATGAACG-CTTCTGT-ACT---TTATGCA-A-TTGTAATCA-AATTGTAGCTAG---AGGATTTTCCTTATA-CTCTTGAATGT---TA-TATTG-----ACATTGCGTA-GAG-ATTTTT---T--ttcaaaagtgttgtagaccacagcagtggta
gi|25 : TTTTAGAT--GATAT-GAAT--TGTTCTGC-TCCAAAATACC--AA--CAAG-TTTTTG--AACTCA-TGTC-TTCCAA--AGAG----T-G-TA-GTTTTAAGAAA----TTG---T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-A------TAT-TTTCTG-TT---TGC-CAAACTCTGG-GTC-T----GTTT-------GAC-CCC-TGTAATTTG--A-AT-T--ATT--AA---AATATAT-A----TG-TA-AA-T-AC-------ATTT------C---AT-G-T
gi|27 : ----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-AATTGAATAT-TGTCTG-TTAATCTC-CAAACTCG---GTC-T----GTTT-------GAT-CCT-TGTAATATGT-A-AT-T--ATT--AT---TATATAT-AATTATG-TA-AAAT-AC-------GTTT------C---AT-G-TG-CC-TCGTG--TACCATTAC--G-TAGC-GTGAGTG-TAATAAACTGAA
gi|28 : GTTTACG-GTGAAACTGGACGATATCC--TTTGTATGT-----AACAATTTT-T-----------ACTAGAATTGTCTCTTATT-G----GGCAAAA-C-TTGT-CAACGGC-AATGA-CAACA-AAC-TTAGCAAAA-TCATCTTTA
gi|29 : aaacatatatttaattgaaaaagttgtactccaagttatattGAACTCA-TATC-TTCCAA--AGATC--TT-G-TA---TCTG---------------T--GTCT---TTTTA-TTTTG-AA----ACTC-AACA-A------TAT-TGTCTG-TT---CT----AACTCTTTAATA-T----G--T-------AAC-CCC-TGTA------------------------------AT-A----TG-TA-AA-T-AC-------GTTT------C---AT-A-CA-CC-TCAGG--TACCATTCC--A-TGGC-TTGAGTG-TGATAAACTG
gi|3 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTA--------------TTT-T-----------ACTAGAATGGTCTCTTATA-G----GGCAAAA-C-TTGT-CAACGGC-AATGA-TAACA-AAC-TTAGCAAAA-TTATCTATATGTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GA--T-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGGC-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTTAATCAAAG-ACTACGGGATCAG-TTCC--TACAAAAAAT--GG--C-ATGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATTTA--TAGAAT-TTTTAAAACAAGTT-TTGAC-TG-CGAAAAATATTTT-AC-ATTACTAC----GGCGA-AA-ATT---ACAAA-A----AATCT-A-TGTAAAGTTTAGAAC-TACAAACCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAAT-AAGACTGC-A-TGCAAGA-AATGAACG-CTTCTAT-ACA---TTATACA-A-CTATAACCA-AACTG--G--TG---ATGAATTTCATTTTATTTCTTGAATGT-AAGA-CATTGTG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTAAAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAATTTTTTGTGAAATTA-TGTC-TTCCAA--AGACC--CT-G-TA-GTTTTACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTACTTTGT-A-AT-T--ATT--AT---TGTATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|30 : ------TAT-TGTCTA-TT---CTC-CTAATTCCCT-GTCTT----GTTCTATGAAAGAC-CCT-GGTGATGTGT-A-AA-TAAATG--AT---TATACG--A----TGTTA-AA-TGAC-------GCTC------A---ATGG-TA-CC-TCATG--TACCATTACAAA-TGGTATTGAATGCTACTAAGCTGAAC
gi|31 : atAACTCTTT-GT---------TT-------GAC-CCC-TGTATTTTGC-A-AT-T--GTT--AA---TGTATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-C---CATG---------CT--A-GGGT-TTGAGTG-TAATTAACTGAATTG
gi|32 : tcttttaaaataagaagtatatttgttacatcgaatccttctttGATCCCTTATT-G----GGCGAAG-C-TTAT-CAAC----AATGA-CAACG-AAT-TAAGTACGG-CTATTTACGTGTATG---TAC-GTAA--CT-TGCACGACAA--AG-AAAGAGTAACAAATCCGTA-----AA--T-AG-T-ATTT--TAT-----ACAATTGCAGTATTT--
gi|33 : CA-A------TAT-TGTCTG-TT---CTC-CAAACCCTTT-GTC-T----GCTT-------GAC-CCC-TGCAATTTGT-A-AT-T--ATT--AT---TGTATAT-A----TG-TA-AA-T-AC-------GTTTCATGTAC---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGA
gi|34 : TA-TTTTG-AA----GATT-AATA-T------TAT-TGCCTG-TT---C-----ATCTCCTT-TAC-TTTTAATTT-------G-C-CCC-T--------T-A----T--GCT--AA---TGT---T-A----TG-TA-AA-T-AT-------CTCT------T----T-G-TA-AC-TTATG--TACCATCCC--A-TGAT-TTTGATA-GAATAAACTGAACTGc
gi|35 : TTCTGT-ACG---TTATGCA-A-CTGTAATCA-AATGG--G--AG---ATGAATTTTATTATA--TCTTGAATGT-AAGA-TATTGGG-TAAAATTGCATACAAG-ATTTTT---TA-GATGTAGAATATTGTTCTGC-CCCAAA-CAC
gi|36 : gaGATCAG-TTTA--TACAAAAGCA--GGATC-ATAGTGATAT--CATCAGTTCGTCTAGAG--G-AC--ATAT-TA--TTAGAC-TTTTAAAACCA------GAA-TG-TGAAAAATACTTTAAT-ATTA-TAT----GTCAG-AA-GTTTAGACAA
gi|37 : GTTTACG-GTGAAACTGGGCGATATCCTTTTTTTATATAACAAA-----TTT-T-----------ACGAGAATGATCTCATATT-GCAAATGTAAAA-CATTGTGCAA
gi|38 : aaaggtagcacacaaagttttat----T--GTAT---GTTTA-TTTTG-AA----AATC-AATA-A------TAT-TGTCTA-TT---ATC-CTGATTTTTC-ATC-T----GTTT-------TAC-CCCATGTATT
gi|4 : aactgGGTTGACC-TTGAAACTGAACGATATCC--TTTGTATGT-----AACAA-TTTGT-----------ATAAGAATGGTCTCTTATT-G----GGCAAAT-C-TTGT--AACAGA-AATGA-TAACA-AAC-TTAATAAAA-TTATCTATATGTATGATGTAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAATTGACCCGTG-----GA--T-TT-T-A-TT--TTT-----GAAA----AGTATTT--TTGATAAG-TGTGGTTTC------T----TAAACATTTGAATCGA-GCATGGAAC-ACGGA-AT-TTTA-AC-TCTATGTGGATTACAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--CAC-AAAAAT--GG--C-ACgcatatactatacagttaacgcatatcac
gi|41 : gtaattttagcagagtctgcaaatgatttgcaggtggcgttgaatgaatttagtacctacagtaaagtatggagactgactgtaaatatcattaaaacaaaaattgtagtattttctaaaggtcaccaatccaaatgttctttcacttactatgggttatatattgaaacagccaatgaattcattatttcagatgtttgaagtcattagaaaaataagattatttgatctaccttatgactgtcagttagatttatttgataaagtagtggtacctgttttactatatgtatgtgaaatttggggttatgaaaatattgatattgaagaacgtgtccattcaaattttttaatacatacttaatttaaaaagcagtacaccaagttatatTT-GTC-T----GTGT-------GAC-CCT-TTTATTTTGA-A-TT-T--ATT--AA---TGTGTAT-A----TG-TA-AA-T-AC-------GTGT------C---AT-G-TA-CC-TCATG--TGC---TTC--A-TGGT-TTGAGTG-TGATTAATTGAACTG
gi|43 : AAAAAT--GA--C-AGGAGGATAT--ATCTACGTCTTCAAAAA--G-AG--TAATTCA--CAGCAT-TTTCAAAACAAAAT-TTCAA-TG-TGATTAATATTAG-AC-ATTATTAC----
gi|44 : acCTCTTT-GTC-T----GCTT-------GACGACC-TGTACTT------------------------TATAT-T----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGAACTG
gi|45 : A----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACGCT---GTC-T----GTTT-------GAT-CCC-TGTAATATGT-A-AT-T--ATT--AT---TACATAT-A----TG-TA-AA-T-AC-------GTTT------T---AT-G-TG-CC-TC
gi|47 : -TATATTATGT-AGATAT--ATT--AT---TATGTAT-A----TT-TG-TA-T-TC-------ATTTA-----T---AT-G-TT-CC-TCATG--TACCAGTAT--A-TGGT-TTGAGCG--AATAAATTGAACT
gi|5 : TTTGTG-GTGAAACTGGACGATATCC--TTTGTATGT-----A-----TTT-TTTTTTGGTTTTACTAGAATGGTCTCTTATT-G----GGCAATA-C-TTGT-CAACAGC-AATGA-TAACA-AAC-TTAGCAAAA-TTATCTATATGTATG---TAC-GTAA--AT-TATCCAACAA--AG-GAAAAATAAGTGACCCATG-----GG--T-TT-T-A-TT--TTT-----TAAT----AGCATTC--TTGATCAA-TATGGGCTC------T----CTAACATTTGGATTAA-GCATTGAAC-ACAGA-AT-TTTA-AC-TTTATGTGAACTAAAACAAC--Tta
gi|51 : aaaaaaaaaaaaacaagagagaaaataacaccgcctttgtaagcaagcacaggaagcttgatatgtttggggtcatttagaagaaaaataaaatcttgtttgatctaaccatttgactatcaatgatatttttctttttctcgatgaaagctgtgtggtacctgttctttgtactatatatataacatgtgataatttcggggttataaataaaatagaagaacgtgtccatttaaaattttgaaaacatactagtacttaattaaaaaagtagtacacaaagttatatgtTGTGA-AT-T--ATT--AAA--TGTATAT-A----TG-TA-AA-A-AC-------GTTT------C---AT-------------G--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|54 : ATG--TACCATTAT--A-AGGT-TTGAGCG--AATAAACTGAA
gi|55 : -TA-CC-TCATG--TACCATTGC--A-TGGT-TTGAGTA-----GAACTGAAtaaatt
gi|56 : a-A-TA--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGGCTC------T----CAAa
gi|7 : TCCTTCAAAGG--G-AG--TGATCTG--CGG------TTAAAA-AAATT---GAA-TG-TGAGGAATATTTG-AC-ATTGTTAC----AA--G-AA-ATT---TTTGG-A----AAACT-T-TGTTAAATTTAGATC-TACTATTCAAC-ACCTTT-C-T-----GTCGAAT-TAGG-CAGGT-GGAGT-AA----TTTA-T-TAAGA-AATGAATG-CTTTTGT-AGG---TTATGTA-A-TTGTAACCA-ATTTG--G--AA---ATGAACTCCATTATA-TTCTGGAATGT-AAAG-TATTGAG-C-AAATTATGCA-GAA-ATTTTC---TA-AACATAGAA---TGTTAAGA-CCCAAA-TA-C--TA--TAAA--TATTGTTAACTTA-TGTC-TTCTAG--AGATT--AT-G-TA-TCTGTAATAAA----GT----T--CTCTACGTTTTA--TCTA-AAATTCAATT-AACG-G------TATATTTTTG-TC---GGA-TAGATTTTTT--TC-T----GTTT-------GAC-CCC-TG------------------TT--AT---TGCGTAT-A----TG-TA-AA-T-G------------------C---AT-G-CA-CC-TCATA--TTCCATT
gi|9 : gctcaatcgcacgtctctaggcGTTTACGCGTGAAACTGGACGAT-TCC--TTT-TATGT-----AACAATTTT-T-----------ACTAGAATG--CTCTTATTTG----GGCAAAA-C-TTGT-CAAC-GC-AATGA-C-ACAGAACTTTAGCCAAA-TTgaaaaaaacctgaagt
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAATGGTGTATCCACCAATGTGGATTTTTTTTCAGCTGTAATGTAGGTGTGCGGCAAGGTGAATATTTGTTCCCATTTTTATTCTCTATGTATATTAATGATCTGGGGCAATATCTGTTAGAGAAAAAATATAATTGGAGGATGAACTTTTTTATGTTCTTTTTATGCCAATGATACTGTCATTCTGGCTGAAACGGCTGACGAATTATACATGTATATGTATCTTTGAGTGAATTTTGTTTATATTGTGAACAATGGATGTTGAACGTTGATATTAGTAAGACAAAAATATTAGGGTGTTTTTCTGAAAGGCCCAATGCTGAAAAGAGAATTAATTTTTTTTCAATAACACTGTTAAAGAAAATGCAAAAGAATTTAAAAACCTGGGATTTTTTCCCCCGCTCAAGTTCATTTGGCAAAGCTAAAAAAGATCTTTGTGAACAGGCAGTGTATGGATCGAGTTAGTAGAAAAAGTTACCTATCGACTGCCTGTCAATATTTAT
Unaligned ( gi|8 ): AATGTATTGTGTTCGTCAAGGATGACAAACCTATCCCTGTTTGTTTTTTATTAATATGATGCAATTGACTATTAAGAGACAAAAATCATTTACTGGGTCTTACAACAATATTGCCGGAGGAGTATGCCAAAAAGAATATTTTTATATGATTTATGCAAGCCGATGGCACGACAGTTAATTTTAAGCAGAATCTGGCAAATTAGTTTGCAGGTTAGCAATGCGTTGAAGTGAAATTAGATACCTACCTGCAAACTGGCTTGCGAATACTTACTGCGAATATTTAGACTAAAACAAAAATTGTAGTATTTTCTATAGGTTGACAACCCAAACTGCTCTTTCACCATAATAATGGATTACTATGTCTTGAAACAGGACAATGTATTTTCAATTATTCAAAAAAAAAAAA
Unaligned ( gi|15 ): GTCCGGGTCCTTTCGTAGATCAAAGAAGTATTTAACTGAATTAATGTACGAGATAATTAAAAAAAAAATCCGGTTGTATGATTTATCAATTGAATGTCAATTAGATTTATTTGATAAGGTTGTTGTACCAGTTTTATTGTATGCATTTGAAACATGGGGCTATGAAACCAATGAGATTATTGAGCTCCTGTACATCTAAGAGTTCTCAAACACATTTTTAAACCTTAAGAGCAGTACACCTAGTTTCATGGTGTACGGCGATACAGGCAGATAACCATTTTA
Unaligned ( gi|18 ): CATTATTTTCTGTAGATCAGGTTCTATTTAGAAAGCAAAGATCACTTGAGTGCCCAATCCGAAATAGCAATGTATATTGTGATAAGAAAAATTAGACAATTTAATTCACCTGTTGGCTGTCAGTTTTATGTGTGCAATGAGTTGGTCGTGCCAGCTTTGTTCTATGGTTGTGAAATTTGGGTTTTGAAAAACTCGATATTATTAATGGAGTACATCTTAATTAAATTTCTAACGGGCATGTTTTTAATTTAAAAAGCAGT
Unaligned ( gi|21 ): GAACAAGCATCAAAAGCTCTTTATGGTGTATTACGTAAGATTCGTTATTTCAATTTGGCTAAAATTGTCAGTTAGACTTGTTTGATAAAGTAAATCACCCAATTTTACTTTACTCTTGTGAAATTTGGGGTTATGAGAAAATGGACATTATTGAAAAAGTACACCTTAAATTTGTTTTAATTTATCTTGAATCTTAAGTCAAGTACCCCGAATTCTATGGTGTATGGGGA
Unaligned ( gi|23 ): GTCCTTTTGTAAGGCAAAGGAAGCATTAGCTGCACAAGCTCAGAAAAGCAATGTACGGATACATTAAAAAAAATCCCGATTTGGTCGATTGGCGTTTATTTTATGCATAAGGTTCGTTGTTTCCAGTTTTACTGTATGCATGTGAAAATATGCGGGCTATGAAAACTATTGATATTATTGAGCGCGTGCATTTGAGATTTCTAAAAACACATTTTTTAAA
Unaligned ( gi|26 ): ACAAAAATATTACTGGTCTTACAACAATATTGCCGAGAGTATGCAAAAAGAATTATTTTTATATATTTTATGCAGATGGCACAGTAATTTTAGCAGAATCTGCAAATTATTTGCAGGTAGCGTTGAGTGAATTTAGTACCTACTGCAAACTGGTTGGAAACTTACTGCGAATATTAGTAAAAC
Unaligned ( gi|39 ): TTAATTGGACGATTGTATATCGGTTTGATTTCTTTGATAAGTTGGTCATACCGTTTATACTCTACTGCTGTGAGAATTTGGATTTTCAAAAAATCGATATCATT
Unaligned ( gi|40 ): AAACCAACACCCCCCCCCCAAAAAAAACAAATACAAAAAAAAAAAACCGCCTCTGTGAGCAAGCGCAGAAAGGTATGTTTGGAGTCATTAGAAAAATAAGATT
Unaligned ( gi|42 ): AAATTGTAATGAATAAAGTATTGTTTAACACTACCATGCTACTTTATGGTTGTGAATTTGGGGTTACGAAAACATAGATATTATTGAACGAGTACATTTAA
Unaligned ( gi|46 ): ATGGAACATTAATTGAAAAAGTACATCTTAAACTTTTTGAAGATTTATTTTGGATTTTAAAAAGTAAGGCGGAATTTATGGTTGTATGGGGA
Unaligned ( gi|48 ): TTGTGTAAATACATGTAGTATGTACACATTCCAAGTACAATTTATGCACACTATGCATTCCTTTCTATTGTAAACCACAGGCGGTA
Unaligned ( gi|49 ): TCATTAGAAAAATAAAATTGTTTGATCTACCATTTGACTATCAGTGAGATTTTTTCGATAAAGCTGTGGTACCTGTTTTACTAT
Unaligned ( gi|50 ): AAATACATTTTTAAAAACCTTTAAAACAGTCCACTAGTTTCATGGTGTACGTCGAAACAGGTAGATATTCACTGT
Unaligned ( gi|52 ): GTCCATTTAAAATTTTTAAAACATATTTAATTTAAGAAGTAGTACACCAAGTTATATGGTTTACGG
Unaligned ( gi|53 ): TTTAACTGCAATAATGGTGTTCACCAAGGAGGAAACGTATCCCTGTTGGTTTTTTTT
Unaligned ( gi|57 ): GCACATACATTAATATACAGTTAACGCATATCACTGAG
Alignments
lowQualScore : 2222222222 111111111 1111 11 111 11111 11111 11111111111 11 11111 111111 11111 222222222222222222 111 11111 2 111111 2222222 1111111111 111
lowQualScore : 5 66 4 0 4444444444 5 5 0 0 4 9999 4 4 777777777 4 777 6 0000 5 5 11 66 5 5 000 5 77 5 2 66 5 44 99999 5 555 4 66 11111 9999 66 5 5 66666666666 5 5 888 5 5 5 77 6 5 0 66 0 00 66 4 2 66 2 66 4 66 0 4 66 2 5 7 55 5 5 4 4 0 44444 5 5 888 5 222222 666 3 6 1 1 6 5 5 44444 5 5 333333333333333333 4 111 4 777 00000 6666 3 4 55 55 777 0 0 3 3 4 3 3 3 33 777777 11 3 3 3 555 55 0000000 8 3 3 44 44 3 3 55 3 5555555555 33 111 2 1 2 5555 2 2 666666 2 2 333 2 1 1 4444 8888888 1 1 4 3 1 8888888 44444 44444 888 22 3 3333 1 1 1 3 5555555 777777 333 1 1 1 1 22 2 22 2 2 33
lowQualScore : . .. . . .......... . . . . . .... . . ......... . ... . .... . . .. .. . . ... . .. . . .. . .. ..... . ... . .. ..... .... .. . . ........... . . ... . . . .. . . . .. . .. .. . . .. . .. . .. . . .. . . . .. . . . . . ..... . . ... . ...... ... . . . . . . . ..... . . .................. . ... . ... ..... .... . . .. .. ... . . . . . . . . .. ...... .. . . . ... .. ....... . . . .. .. . . .. . .......... .. ... . . . .... . . ...... . . ... . . . .... ....... . . . . . ....... ..... ..... ... .. . .... . . . . ....... ...... ... . . . . .. . .. . . ..
lowQualScore : 0 99 5 2 0000000000 0 0 4 3 4 4444 4 4 888888888 4 888 5 6666 0 0 99 99 0 7 000 7 99 7 0 99 0 22 44444 0 444 4 11 11111 4444 11 0 9 00000000000 7 7 666 7 7 7 99 7 7 2 99 1 66 11 4 7 99 0 11 4 11 2 2 99 0 0 0 11 0 0 4 4 9 88888 0 0 888 0 666666 111 5 7 0 0 7 7 7 33333 0 0 333333333333333333 4 222 0 000 00000 5555 9 0 55 55 000 3 4 6 6 5 6 6 3 66 777777 33 3 3 8 555 00 9999999 8 3 3 66 66 3 3 11 1 8888888888 99 888 7 9 7 3333 5 2 111111 1 2 999 2 9 9 0000 8888888 9 8 0 3 7 9999999 33333 33333 000 44 5 9999 8 8 8 6 9999999 000000 222 8 7 8 8 55 1 88 0 0 44
consensus : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAAT-AA----CACTGTAAGA-AATGAACG-CTTCTGT-ACG---TT-----ATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATATTTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GACC-CC-TGTANTTTGT-A-----ATTA-----TT-----A-A-TG--TATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
Reference ( family-473 ) : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCCGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAAT-AA----NNNTGTAAGA-AATGAACG-CTTCTGT-ACG---TT-----ATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATATTTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GACC-CC-TGTANTTTGT-A-----ATTA-----TT-----A-N-TG--TATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|1 : GGTTTACG-GTGAAACTGGACAATATCC--TTTGTATGTAAC-------AA-TTT-T-TCNNNNNNNNNNNNNNN-NNN----NNNNNNN-C-TTTCCTAGAATGT-CCTTATTGGCAAAACTTGT-CAACG-GCCGATGATCAAAAAA-TTAGCCAAATAATGTA---TACTGCAATCATGTAT-TGAT----AG-AAAAAATAATTGACACATGAA---AAT-TTACGA-TTGATAT-----GAAA----AG-ATTT--TTGATAAACTGTGG-CTC------T----CAAAT-TTTGGATT---GCATGG-AC-ACGG-CGAT-TTT--AC-TCTATGTGGATTAAAACAAT--TGTTAATCAAAG-ACTA--AGATC---TCTC--TACACAAAATTGGG--C-ATGGTGATAT--TGCTAAT--TTCTCAGG--G-AG--TTATTTA--TA-AAT-TTTAAAAACAGGTT-TTGAATTG-CAAAAAA-ATTTT-AC--TTACTACTCTGAACGA-AAGATT---AC-AAACA----AATCT-ACTGTTAAGTTTA-AAC-TA-AAATCACC-ACTCTT-C-T-----GTTG-AG-TAGGCCAGATGGGAAT-AA----CACTGTAAGATATTGAACG----CTGT-ACGTCATT-----ATACACATCTGTAA-CA-AACTG--G--TG---ATGAATTTCATTTTA-TTCTTGAATGT-AAGATCATTGTGAT-AATCTGCGTA-GAA-ATGTTT---TA-GGTATGGAATATTGTTCTGC-TCCAAA-CACC--AA--ATAA-CATTTGTGAAATTACTGTCTTTCCAA--AGATC--CTGG-TACGTTTTAAGAAAGTTTGT----T--GTCT---TGTTA-TTATGAAA----AATCAAACACA------TAT-TGTCTGTTT---CTCTCAAACTCTTT-GTC-T----GCTTAC-----GA---AC-TGTAC---GT-A-----------------------------TACAT-T----TG-TAGAA-T--C-------GTTG------C---AT-GTTA-CCTTCATGGTTA-CATTAC--ATTGTT-TTGAGTG-TAATAAAATGAAC
gi|10 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatat-C-T-----TTTAAAG-TAGG-CAGGT-GGAAT-AA----CACTGTAAGA-AATGAAC----TATGT-ACG---TT-----ATGCA-T-ATGTAACCA-AATTG--T--AG---AATAATTTCAGTTTATTTTTT-AATAT-AAGG-CATTTTG-T-GAATTGCGTC-GAG-ATTTTT---TTAAGTATATAATATTGTTCTGC-TCCAAA-CACC--AA--AACA-TTAG-GTGAACTTA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GC----T--GTGTC--TTTTA-TTATG--A----AATT-AACA-A------TAT-TGTCTG-TT---TTC-CAAACTCTTT-GTC-T----GTTA-------GACC-CC-TGTAATTTGT-A-----ATTA-----AC-----A-C-TG--TATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CG-TC-----TACGTTTAC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|11 : AGAT-GAGATCAA----GTGTCTTGGA-GATGAAT---TTCATT-ACA---TTCTTGAATGCA-A-----GAC----ATTG--G--G-----------TCATTATATT-CTTGAATGC-AAGA-CATTGGG-T-AAACTGCGTA-GAG-AT
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaACC-A------CAT-TGTCTG-TT---CTC-CTAACTCTTT-GTC-T----GTTT-------GACC-CC-TGTAATTTGT-A-----AATA-----TT-----A-T-GA--TATATAA----TG-TA-AT-TAAT-------GTTT------C---AT-G-TACCC-CCATT--TA-CATTCC--A-TGGT-TTGAGTG-TAATAAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|12 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggtcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCTGACAAGAAGAGAATAAAAATCAACCCATAAGAGAGATATT-C-A-TA--TATAATTTGAAA----AGTATATACTTAATAAA-TGTGGACACAATACATACAACAAATAATTGGATTGAAGCATGAAACCACGGAC-ATATTTAGACATCTA-ATGGATTAAA-CAACAATGATAATCAAGA-ACTACGAGATCAAATTCCCTTACAAAAAAT--GG--CGACGATGATAT--TGCCA-TTCT-CTAAGG--A-AAGATTATCTAAATAGAATATTCTAAAACAAATTATTGAA-TGGCGGAAAATATTTT-AC-ATTACTAC----CACGGAAA-ATT---AC-AAA-T----TATCTAA-TGTT
gi|13 : cTGAAG-TAGG-CAGAT------------------TAAGA-AAGGAGCG-ATTCTGT-ACG---TC-----ATGCA-A-CTGTAATCA-AATTG--G--AG---ATGAGTGTCATTATA-TTCTTGAATGT-AAGA-TATTGGG-T-ATATTGCGTA-GA--ATTTTT---T----T-TAGA----TACTCTGCTTCCAAA-CACCAACA--AAA----TTTGTGAA--CA----C-TTCCAA--AGATC--TT-G-TA-GTATTACGAAA----GTTG--T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-T------TAT-TGTCTA-TT---CTC-CAAATTTCTT-GTC-T----GTTT-------GAAC-CC-TGTGATGTGT-A-----ATTA-----TTAAATAA-A-TG--TATAT-A----TG-TA-AA-T-AC-------GCTT------C---AT-G-TA-CC-TCATG--TACC
gi|14 : -GTATG---TAC-GCGA--AT-CATCTGACAA--AG-GGAAAATAATCGACCCATG-----GAT-TT-C-A-TT--TTT-----GAAA----AGTATTC--TTAATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGAAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAA-TTCC--TACAAAAATC--GG----AAATTGATAT--TGCTAATTCTTCTAAGG--A-AG--TTATCTA--TAGAAT-TTCTAAAACAAATT-TTGAA-TG-CGGAAAATATTTT-AC-ATTACTAC----CACGG-AA-ATT---AC-AAA-A----TATCT-A-Tg
gi|16 : aTCC--TCTCAAAAGT--TG--C-TCGATAATGT--TTCTGAGTTATCAAAGGTGGTAG--TGACTTT--TAGAAG-TTGTATAACAA-TT-TTGAA-TA-TGAGGAATATTTG-AC-ATT-TTAC----AAAGA-CA-ATT---AAGAAA-A----AAACT-A-TGTTAAAGGCAGA-C-TGCAAGACATC-GCTTTCTC-TTCCAAGCTTAAG-TAGG-CAGAT-GGATG-GA----TATTGAAAGA-AATGAAAG-CAATAAT-AAA---TA-----TTGTA-T-TTGGAAGCA-GATTG--G--AGATCATGAATGTTATTGTATT
gi|17 : TTTAGAACATATAAATCACCAACCTTC-CTT-----TTTGAAGTTAAG-CAGAT------------------TAAGA-AA-GATCGATTTCTGTAACG---TC-----ATGC--A-CTGTAATCAGAATTG--G--AG---ATGAGTTTCATTATA-TTCTTGAATGTAAAGA-TATTTGG-T-TATATGCGTA-GAT--TTTTT---T--AG-ATAG--------TCTGC-TCCAAA-CACC--CAACAAAA-TT----TGAA--CA----C-TTCCAA--AGATC--CT-G-TG-AGTATACGAAA----GCTTGGT--GTCT---TTTTATTTCTG-AA----AATC-AAAA-T------TAT-TGTCTc
gi|19 : -AAGA-CATTGTG-T-AAATTGCGTT-GAA-ATTTTA------GATATAGAATATTGTTCTGC-TCCAAA-CA----------------------------TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTGTAT-TTTTA-TTACG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTTTTT-GTC-T----GTTT-------GACC-CT-TTTATTTTGT-A-----ATTA-----TT-----A-A-TG--TGTAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCACG--TACCACTCC--A-TGGT-TTGAGTG-TAATAAACTGAACa
gi|2 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT-----------------T-T-ACCAGAA-GGTCTCTTA-TAG----GGCAAAAAC-T---------TGT-C---AACGGCAA----TGAATAACA-AAC--TTAGC--AAAAATTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GCT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGT-GCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTT-ATCAAAGAACTACGGGATCAG-TT-C--TACAAAAAATG-GG--C-ATGGTGATATAGTGCTAATTCTTCTAAGG--G-AG--
gi|2 : aaT-AAGA-CATTGTG-T-AAATTCCGTA-GAG-ATTTTT---T--GGTA-AGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAT-TTTTTGTGAAATTA-T-TC-TTCCAA--AGACC--CT-GGTA-GTTTAACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAA-CTCTTT-G-C-T----GTT--------GACC-CC-TGTACTTTGT-A-----ATTA-----TT-----A-T-TG--TATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagacattgtgtaaattccgtagagattttttggtaagaatattgttctgctccaaacacccaaaattttttgtgaaattattcttccaaagaccctggtagtttaacgaaagttgtctttttattatgaaaatcaacaatattgtctgttctccaactctttgctgttgacccctgtactttgtaattattattgtatatatgtaaatacgtttcatgtaccccatgtaccattctatggtttgagtgtaataaactgaactga
gi|20 : aacggtttacggtgaaactgtacgatatcctttgtatttaccagaaggtctcttatagggcaaaaacttgtcaacggcaatgaataacaaacttagcaaaaattatctatatgtatgtacgcaaattatctgacaaaggaaaaataactgacccatggctttcatttatgaaaagtatttttgataaatgtgcctctcaaacatttggattgagcatggaacacggccttttaactctatgtgggttaaaacaattgttatcaaagaactacgggatcagttctacaaaaaatgggcatggtgatatagtgctaattcttctaagggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGCGTA-GAGAATTTTT---A--GATATAGAATATTGTTTTGT-CCAAAA-TA-C--CA--AAAA-CAATTGTGAACGCG-TGTC-CTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TGAGTAT---TTTTA-TTTTG-AA----AATC-GACA-A------TAC-TGTCT--TT---CTC-CTAACTCTTT-GTC-T----GGTT-------GGCC-TC-TGTAATTCGT-A-----ATTA-----TT-----A-A-TG----TAC-C----GG-TA-TA-T-AC-------GTTT------TAAAAT-G-TA-CC-TCATA--TACCATTCC-------------------ATAAACTGAACTG
gi|22 : GAATACTGTTCTGC---CAAA-AATT--CA--AAAA-AT---GTGCAATCT-TGTC-TTTTAATTAGATTTTCT-G-TC--TCTTAAGAAA----------------------TTA-------GA----TATG-ATTA-A------TAT-TATCAG-TT---CTC-CAGATGCCCG-CTT-T----ATTT-------GAT-------TATTGTAT-A-------TA-----CT-----ACA-TG--TA-GT-A----TG-TA-AA-T-ACACAGTATATTT------T---AT-G-GA-CA-CCATG--TACCTTTCC--A-TGTT-TCGA
gi|24 : TACTTT-GTGATTACTAC----TACGG-AA-ATT---AC-AAA-AAAAAAATCT-A-TGTTAAGGTTAGAAC-TACAACTCACC-ACCTTC-C-T-----GCTCAAG-TAGG-CAGAT-GGAAT-AG----CACTGTAAGA-AATGAACG-CTTCTGT-ACT---TT-----ATGCA-A-TTGTAATCA-AATTGTAGCTAG---AGGATTTTCCTTATA-CTCTTGAATGT---TA-TATTG-----ACATTGCGTA-GAG-ATTTTT---T--ttcaaaagtgttgtagaccacagcagtggta
gi|25 : TTTTAGAT--GATAT-GAAT--TGTTCTGC-TCCAAAATACC--AA--CAAG-TTTTTG--AACTCA-TGTC-TTCCAA--AGAG----T-G-TA-GTTTTAAGAAA----TTG---T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-A------TAT-TTTCTG-TT---TGC-CAAACTCTGG-GTC-T----GTTT-------GACC-CC-TGTAATTTG--A-----ATTA-----TT-----A-A-AA--TATAT-A----TG-TA-AA-T-AC-------ATTT------C---AT-G-T
gi|27 : ----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-AATTGAATAT-TGTCTG-TTAATCTC-CAAACTCG---GTC-T----GTTT-------GATC-CT-TGTAATATGT-A-----ATTA-----TT-----A-T-TA--TATAT-AATTATG-TA-AAAT-AC-------GTTT------C---AT-G-TG-CC-TCGTG--TACCATTAC--G-TAGC-GTGAGTG-TAATAAACTGAA
gi|28 : GTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-TTACTAGAATTGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TCATCTTTA
gi|29 : aaacatatatttaattgaaaaagttgtactccaagttatattGAACTCA-TATC-TTCCAA--AGATC--TT-G-TA---TCTG---------------T--GTCT---TTTTA-TTTTG-AA----ACTC-AACA-A------TAT-TGTCTG-TT---CT----AACTCTTTAATA-T----G--T-------AACC-CC-TGTA----------------------------------------AT-A----TG-TA-AA-T-AC-------GTTT------C---AT-A-CA-CC-TCAGG--TACCATTCC--A-TGGC-TTGAGTG-TGATAAACTG
gi|3 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT----------------TT-T-ACTAGAATGGTCTCTTA-TAG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTTAATCAAAG-ACTACGGGATCAG-TTCC--TACAAAAAAT--GG--C-ATGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATTTA--TAGAAT-TTTTAAAACAAGTT-TTGAC-TG-CGAAAAATATTTT-AC-ATTACTAC----GGCGA-AA-ATT---AC-AAA-A----AATCT-A-TGTAAAGTTTAGAAC-TACAAACCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAAT-AAGACTGCATGCAAGA-AATGAACG-CTTCTAT-ACA---TT-----ATACA-A-CTATAACCA-AACTG--G--TG---ATGAATTTCATTTTATTTCTTGAATGT-AAGA-CATTGTG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTAAAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAATTTTTTGTGAAATTA-TGTC-TTCCAA--AGACC--CT-G-TA-GTTTTACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GACC-CC-TGTACTTTGT-A-----ATTA-----TT-----A-T-TG--TATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|30 : ------TAT-TGTCTA-TT---CTC-CTAATTCCCT-GTCTT----GTTCTATGAAAGACC-CT-GGTGATGTGT-A-----A--A-----TA-----A-A-TGATTATACGA----TGTTA-AA-TGAC-------GCTC------A---ATGG-TA-CC-TCATG--TACCATTACAAA-TGGTATTGAATGCTACTAAGCTGAAC
gi|31 : atAACTCTTT-GT---------TT-------GACC-CC-TGTATTTTGC-A-----ATTG-----TT-----A-A-TG--TATAT-A----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-C---CATG---------CT--A-GGGT-TTGAGTG-TAATTAACTGAATTG
gi|32 : tcttttaaaataagaagtatatttgttacatcgaatccttctttGATCCCTTA-TTG----GGCGAAG-C-T---------TAT-C---AAC---AA----TGA-CAACG-AAT--TAAGT--ACGG-CTATTTACGT-GTATG---TAC-GTAA--CT-TGCACGACAA--AG-AAAGAGTAACAAATCCGTA-----AAT-AG-T-ATTT--TAT-----ACAATTGCAGTATTT--
gi|33 : CA-A------TAT-TGTCTG-TT---CTC-CAAACCCTTT-GTC-T----GCTT-------GACC-CC-TGCAATTTGT-A-----ATTA-----TT-----A-T-TG--TATAT-A----TG-TA-AA-T-AC-------GTTTCATGTAC---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGA
gi|34 : TA-TTTTG-AA----GATT-AATA-T------TAT-TGCCTG-TT---C-----ATCTCCTT-TAC-TTTTAATTT-------G-CC-CC-T--------T-A-------TG-----CT-----A-A-TG--T---T-A----TG-TA-AA-T-AT-------CTCT------T----T-G-TA-AC-TTATG--TACCATCCC--A-TGAT-TTTGATA-GAATAAACTGAACTGc
gi|35 : TTCTGT-ACG---TT-----ATGCA-A-CTGTAATCA-AATGG--G--AG---ATGAATTTTATTATA--TCTTGAATGT-AAGA-TATTGGG-TAAAATTGCATACAAG-ATTTTT---TA-GATGTAGAATATTGTTCTGC-CCCAAA-CAC
gi|36 : gaGATCAG-TTTA--TACAAAAGCA--GGATC-ATAGTGATAT--CATCAGTTCGTCTAGAG--G-AC--ATAT-TA--TTAGAC-TTTTAAAACCA------GAA-TG-TGAAAAATACTTTAAT-ATTA-TAT----GTCAG-AA-GTTTAGAC-AA
gi|37 : GTTTACG-GTGAAACTGGGCGATATCCTTTTTTTATATAACA------AA-TTT-T-ACGAGAATGATCTCATA-TTGCAAATGTAAAA-CAT---------TGTGC---AA
gi|38 : aaaggtagcacacaaagttttat----T--GTAT---GTTTA-TTTTG-AA----AATC-AATA-A------TAT-TGTCTA-TT---ATC-CTGATTTTTC-ATC-T----GTTT-------TACC-CCATGTATTGCAT-AT----ACTATACAGTT-----A-A-CG--CATAT-
gi|4 : aactgGGTTGACC-TTGAAACTGAACGATATCC--TTTGTATGTAAC-------AA-TTTGT-ATAAGAATGGTCTCTTA-TTG----GGCAAAT-C-T---------TGT-----AACAGAAA----TGA-TAACA-AAC--TTAAT--AAAA-TTATCTATAT-GTATGATGTAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAATTGACCCGTG-----GAT-TT-T-A-TT--TTT-----GAAA----AGTATTT--TTGATAAG-TGTGGTTTC------T----TAAACATTTGAATCGA-GCATGGAAC-ACGG-A-AT-TTTA-AC-TCTATGTGGATTACAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--CAC-AAAAAT--GG--C-ACcac
gi|41 : gtaattttagcagagtctgcaaatgatttgcaggtggcgttgaatgaatttagtacctacagtaaagtatggagactgactgtaaatatcattaaaacaaaaattgtagtattttctaaaggtcaccaatccaaatgttctttcacttactatgggttatatattgaaacagccaatgaattcattatttcagatgtttgaagtcattagaaaaataagattatttgatctaccttatgactgtcagttagatttatttgataaagtagtggtacctgttttactatatgtatgtgaaatttggggttatgaaaatattgatattgaagaacgtgtccattcaaattttttaatacatacttaatttaaaaagcagtacaccaagttatatTT-GTC-T----GTGT-------GACC-CT-TTTATTTTGA-A-----TTTA-----TT-----A-A-TG--TGTAT-A----TG-TA-AA-T-AC-------GTGT------C---AT-G-TA-CC-TCATG--TGC---TTC--A-TGGT-TTGAGTG-TGATTAATTGAACTG
gi|43 : AAAAAT--GA--C-AGGAGGATAT--ATCTACGTCTTCAAAAA--G-AG--TAATTCA--CAGCAT-TTTCAAAACAAAAT-TTCAA-TG-TGATTAATATTAG-AC-ATTATTAC----
gi|44 : acCTCTTT-GTC-T----GCTT-------GACGACC-TGTACTTT----------------------------------ATAT-T----TG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGAACTG
gi|45 : A----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACGCT---GTC-T----GTTT-------GATC-CC-TGTAATATGT-A-----ATTA-----TT-----A-T-TA--CATAT-A----TG-TA-AA-T-AC-------GTTT------T---AT-G-TG-CC-TC
gi|47 : -TATATTATGT-AGATATATTA-----TT-----A---TG--TATAT-T----TG-TA----T-TC-------ATTTA-----T---AT-G-TT-CC-TCATG--TACCAGTAT--A-TGGT-TTGAGCG--AATAAATTGAACT
gi|5 : TTTGTG-GTGAAACTGGACGATATCC--TTTGTATGTATTTTTTTTTGG-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAATA-C-T---------TGT-C---AACAGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GTAA--AT-TATCCAACAA--AG-GAAAAATAAGTGACCCATG-----GGT-TT-T-A-TT--TTT-----TAAT----AGCATTC--TTGATCAA-TATGGGCTC------T----CTAACATTTGGATTAA-GCATTGAAC-ACAG-A-AT-TTTA-AC-TTTATGTGAACTAAAACAAC--Tta
gi|51 : aaaaaaaaaaaaacaagagagaaaataacaccgcctttgtaagcaagcacaggaagcttgatatgtttggggtcatttagaagaaaaataaaatcttgtttgatctaaccatttgactatcaatgatatttttctttttctcgatgaaagctgtgtggtacctgttctttgtactatatatataacatgtgataatttcggggttataaataaaatagaagaacgtgtccatttaaaattttgaaaacatactagtacttaattaaaaaagtagtacacaaagttatatgtTGTGA-----ATTA-----TT-----A-AATG--TATAT-A----TG-TA-AA-A-AC-------GTTT------C---AT-------------G--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|54 : ATG--TACCATTAT--A-AGGT-TTGAGCG--AATAAACTGAA
gi|55 : -TA-CC-TCATG--TACCATTGC--A-TGGT-TTGAGTA-----GAACTGAAtaaatt
gi|56 : a-A-TA--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGGCTC------T----CAAa
gi|7 : TCCTTCAAAGG--G-AG--TGATCTG--CGG------TTAAAA-AAATT---GAA-TG-TGAGGAATATTTG-AC-ATTGTTAC----AA--G-AA-ATT---TT-TGG-A----AAACT-T-TGTTAAATTTAGATC-TACTATTCAAC-ACCTTT-C-T-----GTCGAAT-TAGG-CAGGT-GGAGT-AA----TTTATTAAGA-AATGAATG-CTTTTGT-AGG---TT-----ATGTA-A-TTGTAACCA-ATTTG--G--AA---ATGAACTCCATTATA-TTCTGGAATGT-AAAG-TATTGAG-C-AAATTATGCA-GAA-ATTTTC---TA-AACATAGAA---TGTTAAGA-CCCAAA-TA-C--TA--TAAA--TATTGTTAACTTA-TGTC-TTCTAG--AGATT--AT-G-TA-TCTGTAATAAA----GT----T--CTCTACGTTTTA--TCTA-AAATTCAATT-AACG-G------TATATTTTTG-TC---GGA-TAGATTTTTT--TC-T----GTTT-------GACC-CC-TG------------------------TT-----A-T-TG--CGTAT-A----TG-TA-AA-T-G------------------C---AT-G-CA-CC-TCATA--TTCCATT
gi|9 : gctcaatcgcacgtctctaggcGTTTACGCGTGAAACTGGACGAT-TCC--TTT-TATGTAAC-------AATTTT-T-ACTAGAATG--CTCTTATTTG----GGCAAAA-C-T---------TGT-C---AAC-GCAA----TGA-C-ACAGAACT-TTAGC--CAAA-TTgaaaaaaacctgaagt
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAATGGTGTATCCACCAATGTGGATTTTTTTTCAGCTGTAATGTAGGTGTGCGGCAAGGTGAATATTTGTTCCCATTTTTATTCTCTATGTATATTAATGATCTGGGGCAATATCTGTTAGAGAAAAAATATAATTGGAGGATGAACTTTTTTATGTTCTTTTTATGCCAATGATACTGTCATTCTGGCTGAAACGGCTGACGAATTATACATGTATATGTATCTTTGAGTGAATTTTGTTTATATTGTGAACAATGGATGTTGAACGTTGATATTAGTAAGACAAAAATATTAGGGTGTTTTTCTGAAAGGCCCAATGCTGAAAAGAGAATTAATTTTTTTTCAATAACACTGTTAAAGAAAATGCAAAAGAATTTAAAAACCTGGGATTTTTTCCCCCGCTCAAGTTCATTTGGCAAAGCTAAAAAAGATCTTTGTGAACAGGCAGTGTATGGATCGAGTTAGTAGAAAAAGTTACCTATCGACTGCCTGTCAATATTTAT
Unaligned ( gi|8 ): AATGTATTGTGTTCGTCAAGGATGACAAACCTATCCCTGTTTGTTTTTTATTAATATGATGCAATTGACTATTAAGAGACAAAAATCATTTACTGGGTCTTACAACAATATTGCCGGAGGAGTATGCCAAAAAGAATATTTTTATATGATTTATGCAAGCCGATGGCACGACAGTTAATTTTAAGCAGAATCTGGCAAATTAGTTTGCAGGTTAGCAATGCGTTGAAGTGAAATTAGATACCTACCTGCAAACTGGCTTGCGAATACTTACTGCGAATATTTAGACTAAAACAAAAATTGTAGTATTTTCTATAGGTTGACAACCCAAACTGCTCTTTCACCATAATAATGGATTACTATGTCTTGAAACAGGACAATGTATTTTCAATTATTCAAAAAAAAAAAA
Unaligned ( gi|15 ): GTCCGGGTCCTTTCGTAGATCAAAGAAGTATTTAACTGAATTAATGTACGAGATAATTAAAAAAAAAATCCGGTTGTATGATTTATCAATTGAATGTCAATTAGATTTATTTGATAAGGTTGTTGTACCAGTTTTATTGTATGCATTTGAAACATGGGGCTATGAAACCAATGAGATTATTGAGCTCCTGTACATCTAAGAGTTCTCAAACACATTTTTAAACCTTAAGAGCAGTACACCTAGTTTCATGGTGTACGGCGATACAGGCAGATAACCATTTTA
Unaligned ( gi|18 ): CATTATTTTCTGTAGATCAGGTTCTATTTAGAAAGCAAAGATCACTTGAGTGCCCAATCCGAAATAGCAATGTATATTGTGATAAGAAAAATTAGACAATTTAATTCACCTGTTGGCTGTCAGTTTTATGTGTGCAATGAGTTGGTCGTGCCAGCTTTGTTCTATGGTTGTGAAATTTGGGTTTTGAAAAACTCGATATTATTAATGGAGTACATCTTAATTAAATTTCTAACGGGCATGTTTTTAATTTAAAAAGCAGT
Unaligned ( gi|21 ): GAACAAGCATCAAAAGCTCTTTATGGTGTATTACGTAAGATTCGTTATTTCAATTTGGCTAAAATTGTCAGTTAGACTTGTTTGATAAAGTAAATCACCCAATTTTACTTTACTCTTGTGAAATTTGGGGTTATGAGAAAATGGACATTATTGAAAAAGTACACCTTAAATTTGTTTTAATTTATCTTGAATCTTAAGTCAAGTACCCCGAATTCTATGGTGTATGGGGA
Unaligned ( gi|23 ): GTCCTTTTGTAAGGCAAAGGAAGCATTAGCTGCACAAGCTCAGAAAAGCAATGTACGGATACATTAAAAAAAATCCCGATTTGGTCGATTGGCGTTTATTTTATGCATAAGGTTCGTTGTTTCCAGTTTTACTGTATGCATGTGAAAATATGCGGGCTATGAAAACTATTGATATTATTGAGCGCGTGCATTTGAGATTTCTAAAAACACATTTTTTAAA
Unaligned ( gi|26 ): ACAAAAATATTACTGGTCTTACAACAATATTGCCGAGAGTATGCAAAAAGAATTATTTTTATATATTTTATGCAGATGGCACAGTAATTTTAGCAGAATCTGCAAATTATTTGCAGGTAGCGTTGAGTGAATTTAGTACCTACTGCAAACTGGTTGGAAACTTACTGCGAATATTAGTAAAAC
Unaligned ( gi|39 ): TTAATTGGACGATTGTATATCGGTTTGATTTCTTTGATAAGTTGGTCATACCGTTTATACTCTACTGCTGTGAGAATTTGGATTTTCAAAAAATCGATATCATT
Unaligned ( gi|40 ): AAACCAACACCCCCCCCCCAAAAAAAACAAATACAAAAAAAAAAAACCGCCTCTGTGAGCAAGCGCAGAAAGGTATGTTTGGAGTCATTAGAAAAATAAGATT
Unaligned ( gi|42 ): AAATTGTAATGAATAAAGTATTGTTTAACACTACCATGCTACTTTATGGTTGTGAATTTGGGGTTACGAAAACATAGATATTATTGAACGAGTACATTTAA
Unaligned ( gi|46 ): ATGGAACATTAATTGAAAAAGTACATCTTAAACTTTTTGAAGATTTATTTTGGATTTTAAAAAGTAAGGCGGAATTTATGGTTGTATGGGGA
Unaligned ( gi|48 ): TTGTGTAAATACATGTAGTATGTACACATTCCAAGTACAATTTATGCACACTATGCATTCCTTTCTATTGTAAACCACAGGCGGTA
Unaligned ( gi|49 ): TCATTAGAAAAATAAAATTGTTTGATCTACCATTTGACTATCAGTGAGATTTTTTCGATAAAGCTGTGGTACCTGTTTTACTAT
Unaligned ( gi|50 ): AAATACATTTTTAAAAACCTTTAAAACAGTCCACTAGTTTCATGGTGTACGTCGAAACAGGTAGATATTCACTGT
Unaligned ( gi|52 ): GTCCATTTAAAATTTTTAAAACATATTTAATTTAAGAAGTAGTACACCAAGTTATATGGTTTACGG
Unaligned ( gi|53 ): TTTAACTGCAATAATGGTGTTCACCAAGGAGGAAACGTATCCCTGTTGGTTTTTTTT
Unaligned ( gi|57 ): GCACATACATTAATATACAGTTAACGCATATCACTGAG
Alignments
lowQualScore : 2222222222 111111111 1111 11 111 11111 11111 11111111111 11 11111 111111 11111 111111111111111 2 111111 2222222 1111111111 111 1111
lowQualScore : 5 66 4 0 4444444444 5 5 0 0 4 9999 4 4 777777777 4 777 6 0000 5 5 11 66 5 5 000 5 77 5 66 5 44 99999 5 555 4 66 11111 9999 66 5 5 66666666666 5 5 888 5 5 5 77 6 5 0 66 0 00 66 4 2 66 2 66 4 66 0 4 66 2 5 7 55 5 5 4 4 0 44444 5 5 888 5 222222 666 3 6 1 1 6 5 5 44444 5 5 888888888888888 5 5 0 99 4 777 555 5 4 55 55 777 2 3 3 4 3 3 3 33 777777 11 3 3 3 555 55 0000000 8 3 3 44 44 3 3 55 3 5555555555 33 111 2 1 2 5555 2 2 666666 2 2 333 2 1 1 4444 8888888 1 1 4 3 1 7777777 44444 44444 1111 22 22 1 1 1 1 3 5555555 777777 333 1 1 1 1 22 2 22 2 2 33
lowQualScore : . .. . . .......... . . . . . .... . . ......... . ... . .... . . .. .. . . ... . .. . .. . .. ..... . ... . .. ..... .... .. . . ........... . . ... . . . .. . . . .. . .. .. . . .. . .. . .. . . .. . . . .. . . . . . ..... . . ... . ...... ... . . . . . . . ..... . . ............... . . . .. . ... ... . . .. .. ... . . . . . . . .. ...... .. . . . ... .. ....... . . . .. .. . . .. . .......... .. ... . . . .... . . ...... . . ... . . . .... ....... . . . . . ....... ..... ..... .... .. .. . . . . . ....... ...... ... . . . . .. . .. . . ..
lowQualScore : 0 99 5 2 0000000000 0 0 4 3 4 4444 4 4 888888888 4 888 5 6666 0 0 99 99 0 7 000 7 99 7 99 0 22 44444 0 444 4 11 11111 4444 11 0 9 00000000000 7 7 666 7 7 7 99 7 7 2 99 1 66 11 4 7 99 0 11 4 11 2 2 99 0 0 0 11 0 0 4 4 9 88888 0 0 888 0 666666 111 5 7 0 0 7 7 7 33333 0 0 000000000000000 0 0 1 55 4 888 777 4 4 55 55 000 2 3 3 2 3 3 3 66 777777 33 3 3 8 555 00 9999999 8 3 3 66 66 3 3 11 1 8888888888 99 888 7 9 7 3333 5 2 111111 1 2 999 2 9 9 0000 8888888 9 8 0 3 7 9999999 33333 33333 1111 44 44 7 8 8 8 6 9999999 000000 222 8 7 8 8 55 1 88 0 0 44
consensus : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAACAC----TGT-AAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
Reference ( family-473 ) : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAACAC----TGT-AAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATATTTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|1 : GGTTTACG-GTGAAACTGGACAATATCC--TTTGTATGTAAC-------AA-TTT-T-TCNNNNNNNNNNNNNNN-NNN----NNNNNNN-C-TTTCCTAGAATGT-CCTTATTGGCAAAACTTGT-CAACG-GCCGATGATCAAAAAA-TTAGCCAAATAATGTA---TACTGCAATCATGTAT-TGAT----AG-AAAAAATAATTGACACATGAA---AAT-TTACGA-TTGATAT-----GAAA----AG-ATTT--TTGATAAACTGTGG-CTC------T----CAAAT-TTTGGATT---GCATGG-AC-ACGG-CGAT-TTT--AC-TCTATGTGGATTAAAACAAT--TGTTAATCAAAG-ACTA--AGATC---TCTC--TACACAAAATTGGG--C-ATGGTGATAT--TGCTAAT--TTCTCAGG--G-AG--TTATTTA--TA-AAT-TTTAAAAACAGGTT-TTGAATTG-CAAAAAA-ATTTT-AC--TTACTACTCTGAACGA-AAGATT---AC-AAACA----AATCT-ACTGTTAAGTTTA-AAC-TA-AAATCACC-ACTCTT-C-T-----GTTG-AG-TAGGCCAGATGGGAATAACAC----TGT-AAGATATTGAACG----CTGT-ACGTCATTATACACATCTGTAA-CA-AACTG--G--TG---ATGAATTTCATTTTA-TTCTTGAATGT-AAGATCATTGTGAT-AATCTGCGTA-GAA-ATGTTT---TA-GGTATGGAATATTGTTCTGC-TCCAAA-CACC--AA--ATAA-CATTTGTGAAATTACTGTCTTTCCAA--AGATC--CTGG-TACGTTTTAAGAAAGTTTGT----T--GTCT---TGTTA-TTATGAAA----AATCAAACACA------TAT-TGTCTGTTT---CTCTCAAACTCTTT-GTC-T----GCTTAC-----GA---AC-TGTAC---GT-A------------------------------TACA--T-TTG-TAGAA-T--C-------GTTG------C---AT-GTTA-CCTTCATGGTTA-CATTAC--ATTGTT-TTGAGTG-TAATAAAATGAAC
gi|10 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatat-C-T-----TTTAAAG-TAGG-CAGGT-GGAATAACAC----TGT-AAGA-AATGAAC----TATGT-ACG---TTATGCA-T-ATGTAACCA-AATTG--T--AG---AATAATTTCAGTTTATTTTTT-AATAT-AAGG-CATTTTG-T-GAATTGCGTC-GAG-ATTTTT---TTAAGTATATAATATTGTTCTGC-TCCAAA-CACC--AA--AACA-TTAG-GTGAACTTA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GC----T--GTGTC--TTTTA-TTATG--A----AATT-AACA-A------TAT-TGTCTG-TT---TTC-CAAACTCTTT-GTC-T----GTTA-------GAC-CCC-TGTAATTTGT-A-----ATTA-----AC-----A--C-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CG-TC-----TACGTTTAC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|11 : TTG--G--AG---ATGAATTTCATTACA-TTCTTGAATGC-AAGA-CATTGGG-T-
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcTCATTATATT-CTTGAATGC-AAGA-CATTGGG-T-AAACTGCGTA-GAG-ATcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggACC-A------CAT-TGTCTG-TT---CTC-CTAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTAATTTGT-A-----AATA-----TT-----ATGA-TA--TATA----ATG-TA-AT-TAAT-------GTTT------C---AT-G-TACCC-CCATT--TA-CATTCC--A-TGGT-TTGAGTG-TAATAAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|12 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggtcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCTGACAAGAAGAGAATAAAAATCAACCCATAAGAGAGATATT-C-A-TA--TATAATTTGAAA----AGTATATACTTAATAAA-TGTGGACACAATACATACAACAAATAATTGGATTGAAGCATGAAACCACGGAC-ATATTTAGACATCTA-ATGGATTAAA-CAACAATGATAATCAAGA-ACTACGAGATCAAATTCCCTTACAAAAAAT--GG--CGACGATGATAT--TGCCA-TTCT-CTAAGG--A-AAGATTATCTAAATAGAATATTCTAAAACAAATTATTGAA-TGGCGGAAAATATTTT-AC-ATTACTAC----CACGGAAA-ATT---AC-AAA-T----TATCTAA-TGTT
gi|13 : cTGAAG-TAGG-CAGAT-----------------T-AAGA-AAGGAGCG-ATTCTGT-ACG---TCATGCA-A-CTGTAATCA-AATTG--G--AG---ATGAGTGTCATTATA-TTCTTGAATGT-AAGA-TATTGGG-T-ATATTGCGTA-GA--ATTTTT---T----T-TAGA----TACTCTGCTTCCAAA-CACCAACA--AAA----TTTGTGAA--CA----C-TTCCAA--AGATC--TT-G-TA-GTATTACGAAA----GTTG--T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-T------TAT-TGTCTA-TT---CTC-CAAATTTCTT-GTC-T----GTTT-------GAA-CCC-TGTGATGTGT-A-----ATTA-----TTAAATAA--A-TG--TATA--T-ATG-TA-AA-T-AC-------GCTT------C---AT-G-TA-CC-TCATG--TACC
gi|14 : -GTATG---TAC-GCGA--AT-CATCTGACAA--AG-GGAAAATAATCGACCCATG-----GAT-TT-C-A-TT--TTT-----GAAA----AGTATTC--TTAATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGAAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAA-TTCC--TACAAAAATC--GG----AAATTGATAT--TGCTAATTCTTCTAAGG--A-AG--TTATCTA--TAGAAT-TTCTAAAACAAATT-TTGAA-TG-CGGAAAATATTTT-AC-ATTACTAC----CACGG-AA-ATT---AC-AAA-A----TATCT-A-Tg
gi|16 : aTCC--TCTCAAAAGT--TG--C-TCGATAATGT--TTCTGAGTTATCAAAGGTGGTAG--TGACTTT--TAGAAG-TTGTATAACAA-TT-TTGAA-TA-TGAGGAATATTTG-AC-ATT-TTAC----AAAGA-CA-ATT---AAGAAA-A----AAACT-A-TGTTAAAGGCAGA-C-TGCAAGACATC-GCTTTCTC-TTCCAAGCTTAAG-TAGG-CAGAT-GGATGGATAT----TGA-AAGA-AATGAAAG-CAATAAT-AAA---TATTGTA-T-TTGGAAGCA-GATTG--G--AGATCATGAATGTTATTGTATT
gi|17 : TTTAGAACATATAAATCACCAACCTTC-CTT-----TTTGAAGTTAAG-CAGAT-----------------T-AAGA-AA-GATCGATTTCTGTAACG---TCATGC--A-CTGTAATCAGAATTG--G--AG---ATGAGTTTCATTATA-TTCTTGAATGTAAAGA-TATTTGG-T-TATATGCGTA-GAT--TTTTT---T--AG-ATAG--------TCTGC-TCCAAA-CACC--CAACAAAA-TT----TGAA--CA----C-TTCCAA--AGATC--CT-G-TG-AGTATACGAAA----GCTTGGT--GTCT---TTTTATTTCTG-AA----AATC-AAAA-T------TAT-TGTCTc
gi|19 : -AAGA-CATTGTG-T-AAATTGCGTT-GAA-ATTTTA------GATATAGAATATTGTTCTGC-TCCAAA-CA----------------------------TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTGTAT-TTTTA-TTACG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTTTTT-GTC-T----GTTT-------GAC-CCT-TTTATTTTGT-A-----ATTA-----TT-----A--A-TG--TGTA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCACG--TACCACTCC--A-TGGT-TTGAGTG-TAATAAACTGAACa
gi|2 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT-----------------T-T-ACCAGAA-GGTCTCTTA-TAG----GGCAAAAAC-T---------TGT-C---AACGGCAA----TGAATAACA-AAC--TTAGC--AAAAATTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GCT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGT-GCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTT-ATCAAAGAACTACGGGATCAG-TT-C--TACAAAAAATG-GG--C-ATGGTGATATAGTGCTAATTCTTCTAAGG--G-AG--
gi|2 : aaT-AAGA-CATTGTG-T-AAATTCCGTA-GAG-ATTTTT---T--GGTA-AGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAT-TTTTTGTGAAATTA-T-TC-TTCCAA--AGACC--CT-GGTA-GTTTAACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAA-CTCTTT-G-C-T----GTT--------GAC-CCC-TGTACTTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagacattgtgtaaattccgtagagattttttggtaagaatattgttctgctccaaacacccaaaattttttgtgaaattattcttccaaagaccctggtagtttaacgaaagttgtctttttattatgaaaatcaacaatattgtctgttctccaactctttgctgttgacccctgtactttgtaattattattgtatatatgtaaatacgtttcatgtaccccatgtaccattctatggtttgagtgtaataaactgaactga
gi|20 : aacggtttacggtgaaactgtacgatatcctttgtatttaccagaaggtctcttatagggcaaaaacttgtcaacggcaatgaataacaaacttagcaaaaattatctatatgtatgtacgcaaattatctgacaaaggaaaaataactgacccatggctttcatttatgaaaagtatttttgataaatgtgcctctcaaacatttggattgagcatggaacacggccttttaactctatgtgggttaaaacaattgttatcaaagaactacgggatcagttctacaaaaaatgggcatggtgatatagtgctaattcttctaagggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGCGTA-GAGAATTTTT---A--GATATAGAATATTGTTTTGT-CCAAAA-TA-C--CA--AAAA-CAATTGTGAACGCG-TGTC-CTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TGAGTAT---TTTTA-TTTTG-AA----AATC-GACA-A------TAC-TGTCT--TT---CTC-CTAACTCTTT-GTC-T----GGTT-------GGC-CTC-TGTAATTCGT-A-----ATTA-----TT-----A--A-TG----TA--C-CGG-TA-TA-T-AC-------GTTT------TAAAAT-G-TA-CC-TCATA--TACCATTCC-------------------ATAAACTGAACTG
gi|22 : GAATACTGTTCTGC---CAAA-AATT--CA--AAAA-AT---GTGCAATCT-TGTC-TTTTAATTAGATTTTCT-G-TC--TCTTAAGAAA----------------------TTA-------GA----TATG-ATTA-A------TAT-TATCAG-TT---CTC-CAGATGCCCG-CTT-T----ATTT-------GAT-------TATTGTAT-A-------TA-----CT-----AC-A-TG--TA-G--T-ATG-TA-AA-T-ACACAGTATATTT------T---AT-G-GA-CA-CCATG--TACCTTTCC--A-TGTT-TCGA
gi|24 : TACTTT-GTGATTACTAC----TACGG-AA-ATT---AC-AAA-AAAAAAATCT-A-TGTTAAGGTTAGAAC-TACAACTCACC-ACCTTC-C-T-----GCTCAAG-TAGG-CAGAT-GGAATAGCAC----TGT-AAGA-AATGAACG-CTTCTGT-ACT---TTATGCA-A-TTGTAATCA-AATTGTAGCTAG---AGGATTTTCCTTATA-CTCTTGAATGT---TA-TATTG-----ACATTGCGTA-GAG-ATTTTT---T--ttcaaaagtgttgtagaccacagcagtggta
gi|25 : TTTTAGAT--GATAT-GAAT--TGTTCTGC-TCCAAAATACC--AA--CAAG-TTTTTG--AACTCA-TGTC-TTCCAA--AGAG----T-G-TA-GTTTTAAGAAA----TTG---T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-A------TAT-TTTCTG-TT---TGC-CAAACTCTGG-GTC-T----GTTT-------GAC-CCC-TGTAATTTG--A-----ATTA-----TT-----A--A-AA--TATA--T-ATG-TA-AA-T-AC-------ATTT------C---AT-G-T
gi|27 : ----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-AATTGAATAT-TGTCTG-TTAATCTC-CAAACTCG---GTC-T----GTTT-------GAT-CCT-TGTAATATGT-A-----ATTA-----TT-----ATTA-TA--TATAATT-ATG-TA-AAAT-AC-------GTTT------C---AT-G-TG-CC-TCGTG--TACCATTAC--G-TAGC-GTGAGTG-TAATAAACTGAA
gi|28 : GTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-TTACTAGAATTGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TCATCTTTA
gi|29 : aaacatatatttaattgaaaaagttgtactccaagttatattGAACTCA-TATC-TTCCAA--AGATC--TT-G-TA---TCTG---------------T--GTCT---TTTTA-TTTTG-AA----ACTC-AACA-A------TAT-TGTCTG-TT---CT----AACTCTTTAATA-T----G--T-------AAC-CCC-TGTA-----------------------------------------A--T-ATG-TA-AA-T-AC-------GTTT------C---AT-A-CA-CC-TCAGG--TACCATTCC--A-TGGC-TTGAGTG-TGATAAACTG
gi|3 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT----------------TT-T-ACTAGAATGGTCTCTTA-TAG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTTAATCAAAG-ACTACGGGATCAG-TTCC--TACAAAAAAT--GG--C-ATGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATTTA--TAGAAT-TTTTAAAACAAGTT-TTGAC-TG-CGAAAAATATTTT-AC-ATTACTAC----GGCGA-AA-ATT---AC-AAA-A----AATCT-A-TGTAAAGTTTAGAAC-TACAAACCACC-ACCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAAGACTGCATGC-AAGA-AATGAACG-CTTCTAT-ACA---TTATACA-A-CTATAACCA-AACTG--G--TG---ATGAATTTCATTTTATTTCTTGAATGT-AAGA-CATTGTG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTAAAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAATTTTTTGTGAAATTA-TGTC-TTCCAA--AGACC--CT-G-TA-GTTTTACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTACTTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|30 : ------TAT-TGTCTA-TT---CTC-CTAATTCCCT-GTCTT----GTTCTATGAAAGAC-CCT-GGTGATGTGT-A-----A--A-----TA-----A--A-TGATTATA--CGATGTTA-AA-TGAC-------GCTC------A---ATGG-TA-CC-TCATG--TACCATTACAAA-TGGTATTGAATGCTACTAAGCTGAAC
gi|31 : atAACTCTTT-GT---------TT-------GAC-CCC-TGTATTTTGC-A-----ATTG-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-C---CATG---------CT--A-GGGT-TTGAGTG-TAATTAACTGAATTG
gi|32 : tcttttaaaataagaagtatatttgttacatcgaatccttctttGATCCCTTA-TTG----GGCGAAG-C-T---------TAT-C---AAC---AA----TGA-CAACG-AAT--TAAGT--ACGG-CTATTTACGT-GTATG---TAC-GTAA--CT-TGCACGACAA--AG-AAAGAGTAACAAATCCGTA-----AAT-AG-T-ATTT--TAT-----ACAATTGCAGTATTT--
gi|33 : CA-A------TAT-TGTCTG-TT---CTC-CAAACCCTTT-GTC-T----GCTT-------GAC-CCC-TGCAATTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTTCATGTAC---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGA
gi|34 : TA-TTTTG-AA----GATT-AATA-T------TAT-TGCCTG-TT---C-----ATCTCCTT-TAC-TTTTAATTT-------G-C-CCC-T--------T-A-------TG-----CT-----A--A-TG--T-----T-ATG-TA-AA-T-AT-------CTCT------T----T-G-TA-AC-TTATG--TACCATCCC--A-TGAT-TTTGATA-GAATAAACTGAACTGc
gi|35 : TTCTGT-ACG---TTATGCA-A-CTGTAATCA-AATGG--G--AG---ATGAATTTTATTATA--TCTTGAATGT-AAGA-TATTGGG-TAAAATTGCATACAAG-ATTTTT---TA-GATGTAGAATATTGTTCTGC-CCCAAA-CAC
gi|36 : gaGATCAG-TTTA--TACAAAAGCA--GGATC-ATAGTGATAT--CATCAGTTCGTCTAGAG--G-AC--ATAT-TA--TTAGAC-TTTTAAAACCA------GAA-TG-TGAAAAATACTTTAAT-ATTA-TAT----GTCAG-AA-GTTTAGAC-AA
gi|37 : GTTTACG-GTGAAACTGGGCGATATCCTTTTTTTATATAACA------AA-TTT-T-ACGAGAATGATCTCATA-TTGCAAATGTAAAA-CAT---------TGTGC---AA
gi|38 : aaaggtagcacacaaagttttat----T--GTAT---GTTTA-TTTTG-AA----AATC-AATA-A------TAT-TGTCTA-TT---ATC-CTGATTTTTC-ATC-T----GTTT-------TAC-CCCATGTATTGCAT-AT----ACTATACAGTT-----A--A-CG--CATA--T-
gi|4 : aactgGGTTGACC-TTGAAACTGAACGATATCC--TTTGTATGTAAC-------AA-TTTGT-ATAAGAATGGTCTCTTA-TTG----GGCAAAT-C-T---------TGT-----AACAGAAA----TGA-TAACA-AAC--TTAAT--AAAA-TTATCTATAT-GTATGATGTAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAATTGACCCGTG-----GAT-TT-T-A-TT--TTT-----GAAA----AGTATTT--TTGATAAG-TGTGGTTTC------T----TAAACATTTGAATCGA-GCATGGAAC-ACGG-A-AT-TTTA-AC-TCTATGTGGATTACAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--CAC-AAAAAT--GG--C-ACcac
gi|41 : gtaattttagcagagtctgcaaatgatttgcaggtggcgttgaatgaatttagtacctacagtaaagtatggagactgactgtaaatatcattaaaacaaaaattgtagtattttctaaaggtcaccaatccaaatgttctttcacttactatgggttatatattgaaacagccaatgaattcattatttcagatgtttgaagtcattagaaaaataagattatttgatctaccttatgactgtcagttagatttatttgataaagtagtggtacctgttttactatatgtatgtgaaatttggggttatgaaaatattgatattgaagaacgtgtccattcaaattttttaatacatacttaatttaaaaagcagtacaccaagttatatTT-GTC-T----GTGT-------GAC-CCT-TTTATTTTGA-A-----TTTA-----TT-----A--A-TG--TGTA--T-ATG-TA-AA-T-AC-------GTGT------C---AT-G-TA-CC-TCATG--TGC---TTC--A-TGGT-TTGAGTG-TGATTAATTGAACTG
gi|43 : AAAAAT--GA--C-AGGAGGATAT--ATCTACGTCTTCAAAAA--G-AG--TAATTCA--CAGCAT-TTTCAAAACAAAAT-TTCAA-TG-TGATTAATATTAG-AC-ATTATTAC----
gi|44 : acCTCTTT-GTC-T----GCTT-------GACGACC-TGTACTT-----------------------------------TATA--T-TTG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGAACTG
gi|45 : A----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACGCT---GTC-T----GTTT-------GAT-CCC-TGTAATATGT-A-----ATTA-----TT-----A--T-TA--CATA--T-ATG-TA-AA-T-AC-------GTTT------T---AT-G-TG-CC-TC
gi|47 : -TATATTATGT-AGATATATTA-----TT-----A----TG--TATA--T-TTG-TA----T-TC-------ATTTA-----T---AT-G-TT-CC-TCATG--TACCAGTAT--A-TGGT-TTGAGCG--AATAAATTGAACT
gi|5 : TTTGTG-GTGAAACTGGACGATATCC--TTTGTATGTATTTTTTTTTGG-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAATA-C-T---------TGT-C---AACAGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GTAA--AT-TATCCAACAA--AG-GAAAAATAAGTGACCCATG-----GGT-TT-T-A-TT--TTT-----TAAT----AGCATTC--TTGATCAA-TATGGGCTC------T----CTAACATTTGGATTAA-GCATTGAAC-ACAG-A-AT-TTTA-AC-TTTATGTGAACTAAAACAAC--Tta
gi|51 : aaaaaaaaaaaaacaagagagaaaataacaccgcctttgtaagcaagcacaggaagcttgatatgtttggggtcatttagaagaaaaataaaatcttgtttgatctaaccatttgactatcaatgatatttttctttttctcgatgaaagctgtgtggtacctgttctttgtactatatatataacatgtgataatttcggggttataaataaaatagaagaacgtgtccatttaaaattttgaaaacatactagtacttaattaaaaaagtagtacacaaagttatatgtTGTGA-----ATTA-----TT-----A--AATG--TATA--T-ATG-TA-AA-A-AC-------GTTT------C---AT-------------G--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|54 : ATG--TACCATTAT--A-AGGT-TTGAGCG--AATAAACTGAA
gi|55 : -TA-CC-TCATG--TACCATTGC--A-TGGT-TTGAGTA-----GAACTGAAtaaatt
gi|56 : a-A-TA--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGGCTC------T----CAAa
gi|7 : TCCTTCAAAGG--G-AG--TGATCTG--CGG------TTAAAA-AAATT---GAA-TG-TGAGGAATATTTG-AC-ATTGTTAC----AA--G-AA-ATT---TT-TGG-A----AAACT-T-TGTTAAATTTAGATC-TACTATTCAAC-ACCTTT-C-T-----GTCGAAT-TAGG-CAGGT-GGAGTAAT-T----TATTAAGA-AATGAATG-CTTTTGT-AGG---TTATGTA-A-TTGTAACCA-ATTTG--G--AA---ATGAACTCCATTATA-TTCTGGAATGT-AAAG-TATTGAG-C-AAATTATGCA-GAA-ATTTTC---TA-AACATAGAA---TGTTAAGA-CCCAAA-TA-C--TA--TAAA--TATTGTTAACTTA-TGTC-TTCTAG--AGATT--AT-G-TA-TCTGTAATAAA----GT----T--CTCTACGTTTTA--TCTA-AAATTCAATT-AACG-G------TATATTTTTG-TC---GGA-TAGATTTTTT--TC-T----GTTT-------GAC-CCC-TG----------------TTA-----T-----------TG--CGTA--T-ATG-TA-AA-T-G------------------C---AT-G-CA-CC-TCATA--TTCCATT
gi|9 : gctcaatcgcacgtctctaggcGTTTACGCGTGAAACTGGACGAT-TCC--TTT-TATGTAAC-------AATTTT-T-ACTAGAATG--CTCTTATTTG----GGCAAAA-C-T---------TGT-C---AAC-GCAA----TGA-C-ACAGAACT-TTAGC--CAAA-TTgaaaaaaacctgaagt
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAATGGTGTATCCACCAATGTGGATTTTTTTTCAGCTGTAATGTAGGTGTGCGGCAAGGTGAATATTTGTTCCCATTTTTATTCTCTATGTATATTAATGATCTGGGGCAATATCTGTTAGAGAAAAAATATAATTGGAGGATGAACTTTTTTATGTTCTTTTTATGCCAATGATACTGTCATTCTGGCTGAAACGGCTGACGAATTATACATGTATATGTATCTTTGAGTGAATTTTGTTTATATTGTGAACAATGGATGTTGAACGTTGATATTAGTAAGACAAAAATATTAGGGTGTTTTTCTGAAAGGCCCAATGCTGAAAAGAGAATTAATTTTTTTTCAATAACACTGTTAAAGAAAATGCAAAAGAATTTAAAAACCTGGGATTTTTTCCCCCGCTCAAGTTCATTTGGCAAAGCTAAAAAAGATCTTTGTGAACAGGCAGTGTATGGATCGAGTTAGTAGAAAAAGTTACCTATCGACTGCCTGTCAATATTTAT
Unaligned ( gi|8 ): AATGTATTGTGTTCGTCAAGGATGACAAACCTATCCCTGTTTGTTTTTTATTAATATGATGCAATTGACTATTAAGAGACAAAAATCATTTACTGGGTCTTACAACAATATTGCCGGAGGAGTATGCCAAAAAGAATATTTTTATATGATTTATGCAAGCCGATGGCACGACAGTTAATTTTAAGCAGAATCTGGCAAATTAGTTTGCAGGTTAGCAATGCGTTGAAGTGAAATTAGATACCTACCTGCAAACTGGCTTGCGAATACTTACTGCGAATATTTAGACTAAAACAAAAATTGTAGTATTTTCTATAGGTTGACAACCCAAACTGCTCTTTCACCATAATAATGGATTACTATGTCTTGAAACAGGACAATGTATTTTCAATTATTCAAAAAAAAAAAA
Unaligned ( gi|15 ): GTCCGGGTCCTTTCGTAGATCAAAGAAGTATTTAACTGAATTAATGTACGAGATAATTAAAAAAAAAATCCGGTTGTATGATTTATCAATTGAATGTCAATTAGATTTATTTGATAAGGTTGTTGTACCAGTTTTATTGTATGCATTTGAAACATGGGGCTATGAAACCAATGAGATTATTGAGCTCCTGTACATCTAAGAGTTCTCAAACACATTTTTAAACCTTAAGAGCAGTACACCTAGTTTCATGGTGTACGGCGATACAGGCAGATAACCATTTTA
Unaligned ( gi|18 ): CATTATTTTCTGTAGATCAGGTTCTATTTAGAAAGCAAAGATCACTTGAGTGCCCAATCCGAAATAGCAATGTATATTGTGATAAGAAAAATTAGACAATTTAATTCACCTGTTGGCTGTCAGTTTTATGTGTGCAATGAGTTGGTCGTGCCAGCTTTGTTCTATGGTTGTGAAATTTGGGTTTTGAAAAACTCGATATTATTAATGGAGTACATCTTAATTAAATTTCTAACGGGCATGTTTTTAATTTAAAAAGCAGT
Unaligned ( gi|21 ): GAACAAGCATCAAAAGCTCTTTATGGTGTATTACGTAAGATTCGTTATTTCAATTTGGCTAAAATTGTCAGTTAGACTTGTTTGATAAAGTAAATCACCCAATTTTACTTTACTCTTGTGAAATTTGGGGTTATGAGAAAATGGACATTATTGAAAAAGTACACCTTAAATTTGTTTTAATTTATCTTGAATCTTAAGTCAAGTACCCCGAATTCTATGGTGTATGGGGA
Unaligned ( gi|23 ): GTCCTTTTGTAAGGCAAAGGAAGCATTAGCTGCACAAGCTCAGAAAAGCAATGTACGGATACATTAAAAAAAATCCCGATTTGGTCGATTGGCGTTTATTTTATGCATAAGGTTCGTTGTTTCCAGTTTTACTGTATGCATGTGAAAATATGCGGGCTATGAAAACTATTGATATTATTGAGCGCGTGCATTTGAGATTTCTAAAAACACATTTTTTAAA
Unaligned ( gi|26 ): ACAAAAATATTACTGGTCTTACAACAATATTGCCGAGAGTATGCAAAAAGAATTATTTTTATATATTTTATGCAGATGGCACAGTAATTTTAGCAGAATCTGCAAATTATTTGCAGGTAGCGTTGAGTGAATTTAGTACCTACTGCAAACTGGTTGGAAACTTACTGCGAATATTAGTAAAAC
Unaligned ( gi|39 ): TTAATTGGACGATTGTATATCGGTTTGATTTCTTTGATAAGTTGGTCATACCGTTTATACTCTACTGCTGTGAGAATTTGGATTTTCAAAAAATCGATATCATT
Unaligned ( gi|40 ): AAACCAACACCCCCCCCCCAAAAAAAACAAATACAAAAAAAAAAAACCGCCTCTGTGAGCAAGCGCAGAAAGGTATGTTTGGAGTCATTAGAAAAATAAGATT
Unaligned ( gi|42 ): AAATTGTAATGAATAAAGTATTGTTTAACACTACCATGCTACTTTATGGTTGTGAATTTGGGGTTACGAAAACATAGATATTATTGAACGAGTACATTTAA
Unaligned ( gi|46 ): ATGGAACATTAATTGAAAAAGTACATCTTAAACTTTTTGAAGATTTATTTTGGATTTTAAAAAGTAAGGCGGAATTTATGGTTGTATGGGGA
Unaligned ( gi|48 ): TTGTGTAAATACATGTAGTATGTACACATTCCAAGTACAATTTATGCACACTATGCATTCCTTTCTATTGTAAACCACAGGCGGTA
Unaligned ( gi|49 ): TCATTAGAAAAATAAAATTGTTTGATCTACCATTTGACTATCAGTGAGATTTTTTCGATAAAGCTGTGGTACCTGTTTTACTAT
Unaligned ( gi|50 ): AAATACATTTTTAAAAACCTTTAAAACAGTCCACTAGTTTCATGGTGTACGTCGAAACAGGTAGATATTCACTGT
Unaligned ( gi|52 ): GTCCATTTAAAATTTTTAAAACATATTTAATTTAAGAAGTAGTACACCAAGTTATATGGTTTACGG
Unaligned ( gi|53 ): TTTAACTGCAATAATGGTGTTCACCAAGGAGGAAACGTATCCCTGTTGGTTTTTTTT
Unaligned ( gi|57 ): GCACATACATTAATATACAGTTAACGCATATCACTGAG
Alignments
lowQualScore : 2222222222 111111111 1111 11 111 11111 11111 11111111111 11 11111 111111 11111 111111111111111 111111 2222222 1111111111 111 1111
lowQualScore : 5 66 4 0 4444444444 5 5 0 0 4 9999 4 4 777777777 4 777 6 0000 5 5 11 66 5 5 000 5 77 5 66 5 44 99999 5 555 4 66 11111 9999 66 5 5 66666666666 5 5 888 5 5 5 77 6 5 0 66 0 00 66 4 2 66 2 66 4 66 0 4 66 2 5 7 55 5 5 4 4 0 44444 5 5 888 5 222222 666 3 6 1 1 6 5 5 44444 5 5 888888888888888 5 5 0 99 4 777 555 5 4 55 55 777 3 3 3 4 3 3 3 33 777777 11 3 3 3 555 55 0000000 8 3 3 44 44 3 3 55 3 5555555555 33 111 2 1 2 5555 2 2 666666 2 2 333 2 1 1 4444 8888888 1 1 4 3 1 7777777 44444 44444 1111 22 22 1 1 1 1 3 5555555 777777 333 1 1 1 1 22 2 22 2 2 33
lowQualScore : . .. . . .......... . . . . . .... . . ......... . ... . .... . . .. .. . . ... . .. . .. . .. ..... . ... . .. ..... .... .. . . ........... . . ... . . . .. . . . .. . .. .. . . .. . .. . .. . . .. . . . .. . . . . . ..... . . ... . ...... ... . . . . . . . ..... . . ............... . . . .. . ... ... . . .. .. ... . . . . . . . .. ...... .. . . . ... .. ....... . . . .. .. . . .. . .......... .. ... . . . .... . . ...... . . ... . . . .... ....... . . . . . ....... ..... ..... .... .. .. . . . . . ....... ...... ... . . . . .. . .. . . ..
lowQualScore : 0 99 5 2 0000000000 0 0 4 3 4 4444 4 4 888888888 4 888 5 6666 0 0 99 99 0 7 000 7 99 7 99 0 22 44444 0 444 4 11 11111 4444 11 0 9 00000000000 7 7 666 7 7 7 99 7 7 2 99 1 66 11 4 7 99 0 11 4 11 2 2 99 0 0 0 11 0 0 4 4 9 88888 0 0 888 0 666666 111 5 7 0 0 7 7 7 33333 0 0 000000000000000 0 0 1 55 4 888 777 4 4 55 55 000 6 3 3 2 3 3 3 66 777777 33 3 3 8 555 00 9999999 8 3 3 66 66 3 3 11 1 8888888888 99 888 7 9 7 3333 5 2 111111 1 2 999 2 9 9 0000 8888888 9 8 0 3 7 9999999 33333 33333 1111 44 44 7 8 8 8 6 9999999 000000 222 8 7 8 8 55 1 88 0 0 44
consensus : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACCA-CCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAACAC----TGT-AAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
Reference ( family-473 ) : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACCA-CCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAACAC----TGT-AAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|1 : GGTTTACG-GTGAAACTGGACAATATCC--TTTGTATGTAAC-------AA-TTT-T-TCNNNNNNNNNNNNNNN-NNN----NNNNNNN-C-TTTCCTAGAATGT-CCTTATTGGCAAAACTTGT-CAACG-GCCGATGATCAAAAAA-TTAGCCAAATAATGTA---TACTGCAATCATGTAT-TGAT----AG-AAAAAATAATTGACACATGAA---AAT-TTACGA-TTGATAT-----GAAA----AG-ATTT--TTGATAAACTGTGG-CTC------T----CAAAT-TTTGGATT---GCATGG-AC-ACGG-CGAT-TTT--AC-TCTATGTGGATTAAAACAAT--TGTTAATCAAAG-ACTA--AGATC---TCTC--TACACAAAATTGGG--C-ATGGTGATAT--TGCTAAT--TTCTCAGG--G-AG--TTATTTA--TA-AAT-TTTAAAAACAGGTT-TTGAATTG-CAAAAAA-ATTTT-AC--TTACTACTCTGAACGA-AAGATT---AC-AAACA----AATCT-ACTGTTAAGTTTA-AAC-TA-AAATCACCA-CTCTT-C-T-----GTTG-AG-TAGGCCAGATGGGAATAACAC----TGT-AAGATATTGAACG----CTGT-ACGTCATTATACACATCTGTAA-CA-AACTG--G--TG---ATGAATTTCATTTTA-TTCTTGAATGT-AAGATCATTGTGAT-AATCTGCGTA-GAA-ATGTTT---TA-GGTATGGAATATTGTTCTGC-TCCAAA-CACC--AA--ATAA-CATTTGTGAAATTACTGTCTTTCCAA--AGATC--CTGG-TACGTTTTAAGAAAGTTTGT----T--GTCT---TGTTA-TTATGAAA----AATCAAACACA------TAT-TGTCTGTTT---CTCTCAAACTCTTT-GTC-T----GCTTAC-----GA---AC-TGTAC---GT-A------------------------------TACA--T-TTG-TAGAA-T--C-------GTTG------C---AT-GTTA-CCTTCATGGTTA-CATTAC--ATTGTT-TTGAGTG-TAATAAAATGAAC
gi|10 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatat-C-T-----TTTAAAG-TAGG-CAGGT-GGAATAACAC----TGT-AAGA-AATGAAC----TATGT-ACG---TTATGCA-T-ATGTAACCA-AATTG--T--AG---AATAATTTCAGTTTA-TTTTTTAATAT-AAGG-CATTTTG-T-GAATTGCGTC-GAG-ATTTTT---TTAAGTATATAATATTGTTCTGC-TCCAAA-CACC--AA--AACA-TTAG-GTGAACTTA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GC----T--GTGTC--TTTTA-TTATG--A----AATT-AACA-A------TAT-TGTCTG-TT---TTC-CAAACTCTTT-GTC-T----GTTA-------GAC-CCC-TGTAATTTGT-A-----ATTA-----AC-----A--C-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CG-TC-----TACGTTTAC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|11 : TTG--G--AG---ATGAATTTCATTACA-TTCTTGAATGC-AAGA-CATTGGG-T-
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcTCATTATA-TTCTTGAATGC-AAGA-CATTGGG-T-AAACTGCGTA-GAG-ATcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggACC-A------CAT-TGTCTG-TT---CTC-CTAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTAATTTGT-A-----AATA-----TT-----ATGA-TA--TATA----ATG-TA-AT-TAAT-------GTTT------C---AT-G-TACCC-CCATT--TA-CATTCC--A-TGGT-TTGAGTG-TAATAAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|12 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggtcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCTGACAAGAAGAGAATAAAAATCAACCCATAAGAGAGATATT-C-A-TA--TATAATTTGAAA----AGTATATACTTAATAAA-TGTGGACACAATACATACAACAAATAATTGGATTGAAGCATGAAACCACGGAC-ATATTTAGACATCTA-ATGGATTAAA-CAACAATGATAATCAAGA-ACTACGAGATCAAATTCCCTTACAAAAAAT--GG--CGACGATGATAT--TGCCA-TTCT-CTAAGG--A-AAGATTATCTAAATAGAATATTCTAAAACAAATTATTGAA-TGGCGGAAAATATTTT-AC-ATTACTAC----CACGGAAA-ATT---AC-AAA-T----TATCTAA-TGTT
gi|13 : cTGAAG-TAGG-CAGAT-----------------T-AAGA-AAGGAGCG-ATTCTGT-ACG---TCATGCA-A-CTGTAATCA-AATTG--G--AG---ATGAGTGTCATTATA-TTCTTGAATGT-AAGA-TATTGGG-T-ATATTGCGTA-GA--ATTTTT---T----T-TAGA----TACTCTGCTTCCAAA-CACCAACA--AAA----TTTGTGAA--CA----C-TTCCAA--AGATC--TT-G-TA-GTATTACGAAA----GTTG--T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-T------TAT-TGTCTA-TT---CTC-CAAATTTCTT-GTC-T----GTTT-------GAA-CCC-TGTGATGTGT-A-----ATTA-----TTAAATAA--A-TG--TATA--T-ATG-TA-AA-T-AC-------GCTT------C---AT-G-TA-CC-TCATG--TACC
gi|14 : -GTATG---TAC-GCGA--AT-CATCTGACAA--AG-GGAAAATAATCGACCCATG-----GAT-TT-C-A-TT--TTT-----GAAA----AGTATTC--TTAATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGAAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAA-TTCC--TACAAAAATC--GG----AAATTGATAT--TGCTAATTCTTCTAAGG--A-AG--TTATCTA--TAGAAT-TTCTAAAACAAATT-TTGAA-TG-CGGAAAATATTTT-AC-ATTACTAC----CACGG-AA-ATT---AC-AAA-A----TATCT-A-Tg
gi|16 : aTCC--TCTCAAAAGT--TG--C-TCGATAATGT--TTCTGAGTTATCAAAGGTGGTAG--TGACTTT--TAGAAG-TTGTATAACAA-TT-TTGAA-TA-TGAGGAATATTTG-AC-ATT-TTAC----AAAGA-CA-ATT---AAGAAA-A----AAACT-A-TGTTAAAGGCAGA-C-TGCAAGACATCG-CTTTCTC-TTCCAAGCTTAAG-TAGG-CAGAT-GGATGGATAT----TGA-AAGA-AATGAAAG-CAATAAT-AAA---TATTGTA-T-TTGGAAGCA-GATTG--G--AGATCATGAATGTTATTGTA-TTC
gi|17 : TTTAGAACATATAAATCACCAACCTTC-CTT-----TTTGAAGTTAAG-CAGAT-----------------T-AAGA-AA-GATCGATTTCTGTAACG---TCATGC--A-CTGTAATCAGAATTG--G--AG---ATGAGTTTCATTATA-TTCTTGAATGTAAAGA-TATTTGG-T-TATATGCGTA-GAT--TTTTT---T--AG-ATAG--------TCTGC-TCCAAA-CACC--CAACAAAA-TT----TGAA--CA----C-TTCCAA--AGATC--CT-G-TG-AGTATACGAAA----GCTTGGT--GTCT---TTTTATTTCTG-AA----AATC-AAAA-T------TAT-TGTCT
gi|19 : -AAGA-CATTGTG-T-AAATTGCGTT-GAA-ATTTTA------GATATAGAATATTGTTCTGC-TCCAAA-CA----------------------------TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTGTAT-TTTTA-TTACG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTTTTT-GTC-T----GTTT-------GAC-CCT-TTTATTTTGT-A-----ATTA-----TT-----A--A-TG--TGTA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCACG--TACCACTCC--A-TGGT-TTGAGTG-TAATAAACTGAACa
gi|2 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT-----------------T-T-ACCAGAA-GGTCTCTTA-TAG----GGCAAAAAC-T---------TGT-C---AACGGCAA----TGAATAACA-AAC--TTAGC--AAAAATTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GCT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGT-GCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTT-ATCAAAGAACTACGGGATCAG-TT-C--TACAAAAAATG-GG--C-ATGGTGATATAGTGCTAATTCTTCTAAGG--G-AG--
gi|2 : aaT-AAGA-CATTGTG-T-AAATTCCGTA-GAG-ATTTTT---T--GGTA-AGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAT-TTTTTGTGAAATTA-T-TC-TTCCAA--AGACC--CT-GGTA-GTTTAACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAA-CTCTTT-G-C-T----GTT--------GAC-CCC-TGTACTTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagacattgtgtaaattccgtagagattttttggtaagaatattgttctgctccaaacacccaaaattttttgtgaaattattcttccaaagaccctggtagtttaacgaaagttgtctttttattatgaaaatcaacaatattgtctgttctccaactctttgctgttgacccctgtactttgtaattattattgtatatatgtaaatacgtttcatgtaccccatgtaccattctatggtttgagtgtaataaactgaactga
gi|20 : aacggtttacggtgaaactgtacgatatcctttgtatttaccagaaggtctcttatagggcaaaaacttgtcaacggcaatgaataacaaacttagcaaaaattatctatatgtatgtacgcaaattatctgacaaaggaaaaataactgacccatggctttcatttatgaaaagtatttttgataaatgtgcctctcaaacatttggattgagcatggaacacggccttttaactctatgtgggttaaaacaattgttatcaaagaactacgggatcagttctacaaaaaatgggcatggtgatatagtgctaattcttctaagggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGCGTA-GAGAATTTTT---A--GATATAGAATATTGTTTTGT-CCAAAA-TA-C--CA--AAAA-CAATTGTGAACGCG-TGTC-CTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TGAGTAT---TTTTA-TTTTG-AA----AATC-GACA-A------TAC-TGTCT--TT---CTC-CTAACTCTTT-GTC-T----GGTT-------GGC-CTC-TGTAATTCGT-A-----ATTA-----TT-----A--A-TG----TA--C-CGG-TA-TA-T-AC-------GTTT------TAAAAT-G-TA-CC-TCATA--TACCATTCC-------------------ATAAACTGAACTG
gi|22 : GAATACTGTTCTGC---CAAA-AATT--CA--AAAA-AT---GTGCAATCT-TGTC-TTTTAATTAGATTTTCT-G-TC--TCTTAAGAAA----------------------TTA-------GA----TATG-ATTA-A------TAT-TATCAG-TT---CTC-CAGATGCCCG-CTT-T----ATTT-------GAT-------TATTGTAT-A-------TA-----CT-----AC-A-TG--TA-G--T-ATG-TA-AA-T-ACACAGTATATTT------T---AT-G-GA-CA-CCATG--TACCTTTCC--A-TGTT-TCGA
gi|24 : TACTTT-GTGATTACTAC----TACGG-AA-ATT---AC-AAA-AAAAAAATCT-A-TGTTAAGGTTAGAAC-TACAACTCACCA-CCTTC-C-T-----GCTCAAG-TAGG-CAGAT-GGAATAGCAC----TGT-AAGA-AATGAACG-CTTCTGT-ACT---TTATGCA-A-TTGTAATCA-AATTGTAGCTAG---AGGATTTTCCTTATA-CTCTTGAATGT---TA-TATTG-----ACATTGCGTA-GAG-ATTTTT---T--ttcaaaagtgttgtagaccacagcagtggta
gi|25 : TTTTAGAT--GATAT-GAAT--TGTTCTGC-TCCAAAATACC--AA--CAAG-TTTTTG--AACTCA-TGTC-TTCCAA--AGAG----T-G-TA-GTTTTAAGAAA----TTG---T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-A------TAT-TTTCTG-TT---TGC-CAAACTCTGG-GTC-T----GTTT-------GAC-CCC-TGTAATTTG--A-----ATTA-----TT-----A--A-AA--TATA--T-ATG-TA-AA-T-AC-------ATTT------C---AT-G-T
gi|27 : ----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-AATTGAATAT-TGTCTG-TTAATCTC-CAAACTCG---GTC-T----GTTT-------GAT-CCT-TGTAATATGT-A-----ATTA-----TT-----ATTA-TA--TATAATT-ATG-TA-AAAT-AC-------GTTT------C---AT-G-TG-CC-TCGTG--TACCATTAC--G-TAGC-GTGAGTG-TAATAAACTGAA
gi|28 : GTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-TTACTAGAATTGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TCATCTTTA
gi|29 : aaacatatatttaattgaaaaagttgtactccaagttatattGAACTCA-TATC-TTCCAA--AGATC--TT-G-TA---TCTG---------------T--GTCT---TTTTA-TTTTG-AA----ACTC-AACA-A------TAT-TGTCTG-TT---CT----AACTCTTTAATA-T----G--T-------AAC-CCC-TGTA-----------------------------------------A--T-ATG-TA-AA-T-AC-------GTTT------C---AT-A-CA-CC-TCAGG--TACCATTCC--A-TGGC-TTGAGTG-TGATAAACTG
gi|3 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT----------------TT-T-ACTAGAATGGTCTCTTA-TAG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTTAATCAAAG-ACTACGGGATCAG-TTCC--TACAAAAAAT--GG--C-ATGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATTTA--TAGAAT-TTTTAAAACAAGTT-TTGAC-TG-CGAAAAATATTTT-AC-ATTACTAC----GGCGA-AA-ATT---AC-AAA-A----AATCT-A-TGTAAAGTTTAGAAC-TACAAACCACCA-CCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAAGACTGCATGC-AAGA-AATGAACG-CTTCTAT-ACA---TTATACA-A-CTATAACCA-AACTG--G--TG---ATGAATTTCATTTTATTTCTTGAATGT-AAGA-CATTGTG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTAAAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAATTTTTTGTGAAATTA-TGTC-TTCCAA--AGACC--CT-G-TA-GTTTTACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTACTTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|30 : ------TAT-TGTCTA-TT---CTC-CTAATTCCCT-GTCTT----GTTCTATGAAAGAC-CCT-GGTGATGTGT-A-----A--A-----TA-----A--A-TGATTATA--CGATGTTA-AA-TGAC-------GCTC------A---ATGG-TA-CC-TCATG--TACCATTACAAA-TGGTATTGAATGCTACTAAGCTGAAC
gi|31 : atAACTCTTT-GT---------TT-------GAC-CCC-TGTATTTTGC-A-----ATTG-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-C---CATG---------CT--A-GGGT-TTGAGTG-TAATTAACTGAATTG
gi|32 : tcttttaaaataagaagtatatttgttacatcgaatccttctttGATCCCTTA-TTG----GGCGAAG-C-T---------TAT-C---AAC---AA----TGA-CAACG-AAT--TAAGT--ACGG-CTATTTACGT-GTATG---TAC-GTAA--CT-TGCACGACAA--AG-AAAGAGTAACAAATCCGTA-----AAT-AG-T-ATTT--TAT-----ACAATTGCAGTATTT--
gi|33 : CA-A------TAT-TGTCTG-TT---CTC-CAAACCCTTT-GTC-T----GCTT-------GAC-CCC-TGCAATTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTTCATGTAC---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGA
gi|34 : TA-TTTTG-AA----GATT-AATA-T------TAT-TGCCTG-TT---C-----ATCTCCTT-TAC-TTTTAATTT-------G-C-CCC-T--------T-A-------TG-----CT-----A--A-TG--T-----T-ATG-TA-AA-T-AT-------CTCT------T----T-G-TA-AC-TTATG--TACCATCCC--A-TGAT-TTTGATA-GAATAAACTGAACTGc
gi|35 : TTCTGT-ACG---TTATGCA-A-CTGTAATCA-AATGG--G--AG---ATGAATTTTATTATA--TCTTGAATGT-AAGA-TATTGGG-TAAAATTGCATACAAG-ATTTTT---TA-GATGTAGAATATTGTTCTGC-CCCAAA-CAC
gi|36 : gaGATCAG-TTTA--TACAAAAGCA--GGATC-ATAGTGATAT--CATCAGTTCGTCTAGAG--G-AC--ATAT-TA--TTAGAC-TTTTAAAACCA------GAA-TG-TGAAAAATACTTTAAT-ATTA-TAT----GTCAG-AA-GTTTAGAC-AA
gi|37 : GTTTACG-GTGAAACTGGGCGATATCCTTTTTTTATATAACA------AA-TTT-T-ACGAGAATGATCTCATA-TTGCAAATGTAAAA-CAT---------TGTGC---AA
gi|38 : aaaggtagcacacaaagttttat----T--GTAT---GTTTA-TTTTG-AA----AATC-AATA-A------TAT-TGTCTA-TT---ATC-CTGATTTTTC-ATC-T----GTTT-------TAC-CCCATGTATTGCAT-AT----ACTATACAGTT-----A--A-CG--CATA--T-
gi|4 : aactgGGTTGACC-TTGAAACTGAACGATATCC--TTTGTATGTAAC-------AA-TTTGT-ATAAGAATGGTCTCTTA-TTG----GGCAAAT-C-T---------TGT-----AACAGAAA----TGA-TAACA-AAC--TTAAT--AAAA-TTATCTATAT-GTATGATGTAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAATTGACCCGTG-----GAT-TT-T-A-TT--TTT-----GAAA----AGTATTT--TTGATAAG-TGTGGTTTC------T----TAAACATTTGAATCGA-GCATGGAAC-ACGG-A-AT-TTTA-AC-TCTATGTGGATTACAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--CAC-AAAAAT--GG--C-ACcac
gi|41 : gtaattttagcagagtctgcaaatgatttgcaggtggcgttgaatgaatttagtacctacagtaaagtatggagactgactgtaaatatcattaaaacaaaaattgtagtattttctaaaggtcaccaatccaaatgttctttcacttactatgggttatatattgaaacagccaatgaattcattatttcagatgtttgaagtcattagaaaaataagattatttgatctaccttatgactgtcagttagatttatttgataaagtagtggtacctgttttactatatgtatgtgaaatttggggttatgaaaatattgatattgaagaacgtgtccattcaaattttttaatacatacttaatttaaaaagcagtacaccaagttatatTT-GTC-T----GTGT-------GAC-CCT-TTTATTTTGA-A-----TTTA-----TT-----A--A-TG--TGTA--T-ATG-TA-AA-T-AC-------GTGT------C---AT-G-TA-CC-TCATG--TGC---TTC--A-TGGT-TTGAGTG-TGATTAATTGAACTG
gi|43 : AAAAAT--GA--C-AGGAGGATAT--ATCTACGTCTTCAAAAA--G-AG--TAATTCA--CAGCAT-TTTCAAAACAAAAT-TTCAA-TG-TGATTAATATTAG-AC-ATTATTAC----
gi|44 : acCTCTTT-GTC-T----GCTT-------GACGACC-TGTACTT-----------------------------------TATA--T-TTG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGAACTG
gi|45 : A----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACGCT---GTC-T----GTTT-------GAT-CCC-TGTAATATGT-A-----ATTA-----TT-----A--T-TA--CATA--T-ATG-TA-AA-T-AC-------GTTT------T---AT-G-TG-CC-TC
gi|47 : -TATATTATGT-AGATATATTA-----TT-----A----TG--TATA--T-TTG-TA----T-TC-------ATTTA-----T---AT-G-TT-CC-TCATG--TACCAGTAT--A-TGGT-TTGAGCG--AATAAATTGAACT
gi|5 : TTTGTG-GTGAAACTGGACGATATCC--TTTGTATGTATTTTTTTTTGG-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAATA-C-T---------TGT-C---AACAGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GTAA--AT-TATCCAACAA--AG-GAAAAATAAGTGACCCATG-----GGT-TT-T-A-TT--TTT-----TAAT----AGCATTC--TTGATCAA-TATGGGCTC------T----CTAACATTTGGATTAA-GCATTGAAC-ACAG-A-AT-TTTA-AC-TTTATGTGAACTAAAACAAC--Tta
gi|51 : aaaaaaaaaaaaacaagagagaaaataacaccgcctttgtaagcaagcacaggaagcttgatatgtttggggtcatttagaagaaaaataaaatcttgtttgatctaaccatttgactatcaatgatatttttctttttctcgatgaaagctgtgtggtacctgttctttgtactatatatataacatgtgataatttcggggttataaataaaatagaagaacgtgtccatttaaaattttgaaaacatactagtacttaattaaaaaagtagtacacaaagttatatgtTGTGA-----ATTA-----TT-----A--AATG--TATA--T-ATG-TA-AA-A-AC-------GTTT------C---AT-------------G--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|54 : ATG--TACCATTAT--A-AGGT-TTGAGCG--AATAAACTGAA
gi|55 : -TA-CC-TCATG--TACCATTGC--A-TGGT-TTGAGTA-----GAACTGAAtaaatt
gi|56 : a-A-TA--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGGCTC------T----CAAa
gi|7 : TCCTTCAAAGG--G-AG--TGATCTG--CGG------TTAAAA-AAATT---GAA-TG-TGAGGAATATTTG-AC-ATTGTTAC----AA--G-AA-ATT---TT-TGG-A----AAACT-T-TGTTAAATTTAGATC-TACTATTCAACA-CCTTT-C-T-----GTCGAAT-TAGG-CAGGT-GGAGTAAT-T----TATTAAGA-AATGAATG-CTTTTGT-AGG---TTATGTA-A-TTGTAACCA-ATTTG--G--AA---ATGAACTCCATTATA-TTCTGGAATGT-AAAG-TATTGAG-C-AAATTATGCA-GAA-ATTTTC---TA-AACATAGAA---TGTTAAGA-CCCAAA-TA-C--TA--TAAA--TATTGTTAACTTA-TGTC-TTCTAG--AGATT--AT-G-TA-TCTGTAATAAA----GT----T--CTCTACGTTTTA--TCTA-AAATTCAATT-AACG-G------TATATTTTTG-TC---GGA-TAGATTTTTT--TC-T----GTTT-------GAC-CCC-TG----------------TTA-----T-----------TG--CGTA--T-ATG-TA-AA-T-G------------------C---AT-G-CA-CC-TCATA--TTCCATT
gi|9 : gctcaatcgcacgtctctaggcGTTTACGCGTGAAACTGGACGAT-TCC--TTT-TATGTAAC-------AATTTT-T-ACTAGAATG--CTCTTATTTG----GGCAAAA-C-T---------TGT-C---AAC-GCAA----TGA-C-ACAGAACT-TTAGC--CAAA-TTgaaaaaaacctgaagt
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAATGGTGTATCCACCAATGTGGATTTTTTTTCAGCTGTAATGTAGGTGTGCGGCAAGGTGAATATTTGTTCCCATTTTTATTCTCTATGTATATTAATGATCTGGGGCAATATCTGTTAGAGAAAAAATATAATTGGAGGATGAACTTTTTTATGTTCTTTTTATGCCAATGATACTGTCATTCTGGCTGAAACGGCTGACGAATTATACATGTATATGTATCTTTGAGTGAATTTTGTTTATATTGTGAACAATGGATGTTGAACGTTGATATTAGTAAGACAAAAATATTAGGGTGTTTTTCTGAAAGGCCCAATGCTGAAAAGAGAATTAATTTTTTTTCAATAACACTGTTAAAGAAAATGCAAAAGAATTTAAAAACCTGGGATTTTTTCCCCCGCTCAAGTTCATTTGGCAAAGCTAAAAAAGATCTTTGTGAACAGGCAGTGTATGGATCGAGTTAGTAGAAAAAGTTACCTATCGACTGCCTGTCAATATTTAT
Unaligned ( gi|8 ): AATGTATTGTGTTCGTCAAGGATGACAAACCTATCCCTGTTTGTTTTTTATTAATATGATGCAATTGACTATTAAGAGACAAAAATCATTTACTGGGTCTTACAACAATATTGCCGGAGGAGTATGCCAAAAAGAATATTTTTATATGATTTATGCAAGCCGATGGCACGACAGTTAATTTTAAGCAGAATCTGGCAAATTAGTTTGCAGGTTAGCAATGCGTTGAAGTGAAATTAGATACCTACCTGCAAACTGGCTTGCGAATACTTACTGCGAATATTTAGACTAAAACAAAAATTGTAGTATTTTCTATAGGTTGACAACCCAAACTGCTCTTTCACCATAATAATGGATTACTATGTCTTGAAACAGGACAATGTATTTTCAATTATTCAAAAAAAAAAAA
Unaligned ( gi|15 ): GTCCGGGTCCTTTCGTAGATCAAAGAAGTATTTAACTGAATTAATGTACGAGATAATTAAAAAAAAAATCCGGTTGTATGATTTATCAATTGAATGTCAATTAGATTTATTTGATAAGGTTGTTGTACCAGTTTTATTGTATGCATTTGAAACATGGGGCTATGAAACCAATGAGATTATTGAGCTCCTGTACATCTAAGAGTTCTCAAACACATTTTTAAACCTTAAGAGCAGTACACCTAGTTTCATGGTGTACGGCGATACAGGCAGATAACCATTTTA
Unaligned ( gi|18 ): CATTATTTTCTGTAGATCAGGTTCTATTTAGAAAGCAAAGATCACTTGAGTGCCCAATCCGAAATAGCAATGTATATTGTGATAAGAAAAATTAGACAATTTAATTCACCTGTTGGCTGTCAGTTTTATGTGTGCAATGAGTTGGTCGTGCCAGCTTTGTTCTATGGTTGTGAAATTTGGGTTTTGAAAAACTCGATATTATTAATGGAGTACATCTTAATTAAATTTCTAACGGGCATGTTTTTAATTTAAAAAGCAGT
Unaligned ( gi|21 ): GAACAAGCATCAAAAGCTCTTTATGGTGTATTACGTAAGATTCGTTATTTCAATTTGGCTAAAATTGTCAGTTAGACTTGTTTGATAAAGTAAATCACCCAATTTTACTTTACTCTTGTGAAATTTGGGGTTATGAGAAAATGGACATTATTGAAAAAGTACACCTTAAATTTGTTTTAATTTATCTTGAATCTTAAGTCAAGTACCCCGAATTCTATGGTGTATGGGGA
Unaligned ( gi|23 ): GTCCTTTTGTAAGGCAAAGGAAGCATTAGCTGCACAAGCTCAGAAAAGCAATGTACGGATACATTAAAAAAAATCCCGATTTGGTCGATTGGCGTTTATTTTATGCATAAGGTTCGTTGTTTCCAGTTTTACTGTATGCATGTGAAAATATGCGGGCTATGAAAACTATTGATATTATTGAGCGCGTGCATTTGAGATTTCTAAAAACACATTTTTTAAA
Unaligned ( gi|26 ): ACAAAAATATTACTGGTCTTACAACAATATTGCCGAGAGTATGCAAAAAGAATTATTTTTATATATTTTATGCAGATGGCACAGTAATTTTAGCAGAATCTGCAAATTATTTGCAGGTAGCGTTGAGTGAATTTAGTACCTACTGCAAACTGGTTGGAAACTTACTGCGAATATTAGTAAAAC
Unaligned ( gi|39 ): TTAATTGGACGATTGTATATCGGTTTGATTTCTTTGATAAGTTGGTCATACCGTTTATACTCTACTGCTGTGAGAATTTGGATTTTCAAAAAATCGATATCATT
Unaligned ( gi|40 ): AAACCAACACCCCCCCCCCAAAAAAAACAAATACAAAAAAAAAAAACCGCCTCTGTGAGCAAGCGCAGAAAGGTATGTTTGGAGTCATTAGAAAAATAAGATT
Unaligned ( gi|42 ): AAATTGTAATGAATAAAGTATTGTTTAACACTACCATGCTACTTTATGGTTGTGAATTTGGGGTTACGAAAACATAGATATTATTGAACGAGTACATTTAA
Unaligned ( gi|46 ): ATGGAACATTAATTGAAAAAGTACATCTTAAACTTTTTGAAGATTTATTTTGGATTTTAAAAAGTAAGGCGGAATTTATGGTTGTATGGGGA
Unaligned ( gi|48 ): TTGTGTAAATACATGTAGTATGTACACATTCCAAGTACAATTTATGCACACTATGCATTCCTTTCTATTGTAAACCACAGGCGGTA
Unaligned ( gi|49 ): TCATTAGAAAAATAAAATTGTTTGATCTACCATTTGACTATCAGTGAGATTTTTTCGATAAAGCTGTGGTACCTGTTTTACTAT
Unaligned ( gi|50 ): AAATACATTTTTAAAAACCTTTAAAACAGTCCACTAGTTTCATGGTGTACGTCGAAACAGGTAGATATTCACTGT
Unaligned ( gi|52 ): GTCCATTTAAAATTTTTAAAACATATTTAATTTAAGAAGTAGTACACCAAGTTATATGGTTTACGG
Unaligned ( gi|53 ): TTTAACTGCAATAATGGTGTTCACCAAGGAGGAAACGTATCCCTGTTGGTTTTTTTT
Unaligned ( gi|57 ): GCACATACATTAATATACAGTTAACGCATATCACTGAG
Alignments
lowQualScore : 2222222222 111111111 1111 11 111 11111 11111 11111111111 11 11111 111111 11111 111111111111111 111111 2222222 1111111111 111 1111
lowQualScore : 5 66 4 0 4444444444 5 5 0 0 4 9999 4 4 777777777 4 777 6 0000 5 5 11 66 5 5 000 5 77 5 66 5 44 99999 5 555 4 66 11111 9999 66 5 5 66666666666 5 5 888 5 5 5 77 6 5 0 66 0 00 66 4 2 66 2 66 4 66 0 4 66 2 5 7 55 5 5 4 4 0 44444 5 5 888 5 222222 666 3 6 1 1 6 5 5 44444 5 5 888888888888888 5 5 0 99 4 777 555 5 4 55 55 777 3 3 3 4 3 3 3 33 777777 11 3 3 3 555 55 0000000 8 3 3 44 44 3 3 55 3 5555555555 33 111 2 1 2 5555 2 2 666666 2 2 333 2 1 1 4444 8888888 1 1 4 3 1 7777777 44444 44444 1111 22 22 1 1 1 1 3 5555555 777777 333 1 1 1 1 22 2 22 2 2 33
lowQualScore : . .. . . .......... . . . . . .... . . ......... . ... . .... . . .. .. . . ... . .. . .. . .. ..... . ... . .. ..... .... .. . . ........... . . ... . . . .. . . . .. . .. .. . . .. . .. . .. . . .. . . . .. . . . . . ..... . . ... . ...... ... . . . . . . . ..... . . ............... . . . .. . ... ... . . .. .. ... . . . . . . . .. ...... .. . . . ... .. ....... . . . .. .. . . .. . .......... .. ... . . . .... . . ...... . . ... . . . .... ....... . . . . . ....... ..... ..... .... .. .. . . . . . ....... ...... ... . . . . .. . .. . . ..
lowQualScore : 0 99 5 2 0000000000 0 0 4 3 4 4444 4 4 888888888 4 888 5 6666 0 0 99 99 0 7 000 7 99 7 99 0 22 44444 0 444 4 11 11111 4444 11 0 9 00000000000 7 7 666 7 7 7 99 7 7 2 99 1 66 11 4 7 99 0 11 4 11 2 2 99 0 0 0 11 0 0 4 4 9 88888 0 0 888 0 666666 111 5 7 0 0 7 7 7 33333 0 0 000000000000000 0 0 1 55 4 888 777 4 4 55 55 000 6 3 3 2 3 3 3 66 777777 33 3 3 8 555 00 9999999 8 3 3 66 66 3 3 11 1 8888888888 99 888 7 9 7 3333 5 2 111111 1 2 999 2 9 9 0000 8888888 9 8 0 3 7 9999999 33333 33333 1111 44 44 7 8 8 8 6 9999999 000000 222 8 7 8 8 55 1 88 0 0 44
consensus : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACCA-CCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAACAC----TGT-AAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
Reference ( family-473 ) : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACCA-CCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAACAC----TGT-AAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|1 : GGTTTACG-GTGAAACTGGACAATATCC--TTTGTATGTAAC-------AA-TTT-T-TCNNNNNNNNNNNNNNN-NNN----NNNNNNN-C-TTTCCTAGAATGT-CCTTATTGGCAAAACTTGT-CAACG-GCCGATGATCAAAAAA-TTAGCCAAATAATGTA---TACTGCAATCATGTAT-TGAT----AG-AAAAAATAATTGACACATGAA---AAT-TTACGA-TTGATAT-----GAAA----AG-ATTT--TTGATAAACTGTGG-CTC------T----CAAAT-TTTGGATT---GCATGG-AC-ACGG-CGAT-TTT--AC-TCTATGTGGATTAAAACAAT--TGTTAATCAAAG-ACTA--AGATC---TCTC--TACACAAAATTGGG--C-ATGGTGATAT--TGCTAAT--TTCTCAGG--G-AG--TTATTTA--TA-AAT-TTTAAAAACAGGTT-TTGAATTG-CAAAAAA-ATTTT-AC--TTACTACTCTGAACGA-AAGATT---AC-AAACA----AATCT-ACTGTTAAGTTTA-AAC-TA-AAATCACCA-CTCTT-C-T-----GTTG-AG-TAGGCCAGATGGGAATAACAC----TGT-AAGATATTGAACG----CTGT-ACGTCATTATACACATCTGTAA-CA-AACTG--G--TG---ATGAATTTCATTTTA-TTCTTGAATGT-AAGATCATTGTGAT-AATCTGCGTA-GAA-ATGTTT---TA-GGTATGGAATATTGTTCTGC-TCCAAA-CACC--AA--ATAA-CATTTGTGAAATTACTGTCTTTCCAA--AGATC--CTGG-TACGTTTTAAGAAAGTTTGT----T--GTCT---TGTTA-TTATGAAA----AATCAAACACA------TAT-TGTCTGTTT---CTCTCAAACTCTTT-GTC-T----GCTTAC-----GA---AC-TGTAC---GT-A------------------------------TACA--T-TTG-TAGAA-T--C-------GTTG------C---AT-GTTA-CCTTCATGGTTA-CATTAC--ATTGTT-TTGAGTG-TAATAAAATGAAC
gi|10 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatat-C-T-----TTTAAAG-TAGG-CAGGT-GGAATAACAC----TGT-AAGA-AATGAAC----TATGT-ACG---TTATGCA-T-ATGTAACCA-AATTG--T--AG---AATAATTTCAGTTTA-TTTTTTAATAT-AAGG-CATTTTG-T-GAATTGCGTC-GAG-ATTTTT---TTAAGTATATAATATTGTTCTGC-TCCAAA-CACC--AA--AACA-TTAG-GTGAACTTA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GC----T--GTGTC--TTTTA-TTATG--A----AATT-AACA-A------TAT-TGTCTG-TT---TTC-CAAACTCTTT-GTC-T----GTTA-------GAC-CCC-TGTAATTTGT-A-----ATTA-----AC-----A--C-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CG-TC-----TACGTTTAC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|11 : TTG--G--AG---ATGAATTTCATTACA-TTCTTGAATGC-AAGA-CATTGGG-T-
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcTCATTATA-TTCTTGAATGC-AAGA-CATTGGG-T-AAACTGCGTA-GAG-ATcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggACC-A------CAT-TGTCTG-TT---CTC-CTAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTAATTTGT-A-----AATA-----TT-----ATGA-TA--TATA----ATG-TA-AT-TAAT-------GTTT------C---AT-G-TACCC-CCATT--TA-CATTCC--A-TGGT-TTGAGTG-TAATAAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|12 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggtcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCTGACAAGAAGAGAATAAAAATCAACCCATAAGAGAGATATT-C-A-TA--TATAATTTGAAA----AGTATATACTTAATAAA-TGTGGACACAATACATACAACAAATAATTGGATTGAAGCATGAAACCACGGAC-ATATTTAGACATCTA-ATGGATTAAA-CAACAATGATAATCAAGA-ACTACGAGATCAAATTCCCTTACAAAAAAT--GG--CGACGATGATAT--TGCCA-TTCT-CTAAGG--A-AAGATTATCTAAATAGAATATTCTAAAACAAATTATTGAA-TGGCGGAAAATATTTT-AC-ATTACTAC----CACGGAAA-ATT---AC-AAA-T----TATCTAA-TGTT
gi|13 : cTGAAG-TAGG-CAGAT-----------------T-AAGA-AAGGAGCG-ATTCTGT-ACG---TCATGCA-A-CTGTAATCA-AATTG--G--AG---ATGAGTGTCATTATA-TTCTTGAATGT-AAGA-TATTGGG-T-ATATTGCGTA-GA--ATTTTT---T----T-TAGA----TACTCTGCTTCCAAA-CACCAACA--AAA----TTTGTGAA--CA----C-TTCCAA--AGATC--TT-G-TA-GTATTACGAAA----GTTG--T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-T------TAT-TGTCTA-TT---CTC-CAAATTTCTT-GTC-T----GTTT-------GAA-CCC-TGTGATGTGT-A-----ATTA-----TTAAATAA--A-TG--TATA--T-ATG-TA-AA-T-AC-------GCTT------C---AT-G-TA-CC-TCATG--TACC
gi|14 : -GTATG---TAC-GCGA--AT-CATCTGACAA--AG-GGAAAATAATCGACCCATG-----GAT-TT-C-A-TT--TTT-----GAAA----AGTATTC--TTAATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGAAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAA-TTCC--TACAAAAATC--GG----AAATTGATAT--TGCTAATTCTTCTAAGG--A-AG--TTATCTA--TAGAAT-TTCTAAAACAAATT-TTGAA-TG-CGGAAAATATTTT-AC-ATTACTAC----CACGG-AA-ATT---AC-AAA-A----TATCT-A-Tg
gi|16 : aTCC--TCTCAAAAGT--TG--C-TCGATAATGT--TTCTGAGTTATCAAAGGTGGTAG--TGACTTT--TAGAAG-TTGTATAACAA-TT-TTGAA-TA-TGAGGAATATTTG-AC-ATT-TTAC----AAAGA-CA-ATT---AAGAAA-A----AAACT-A-TGTTAAAGGCAGA-C-TGCAAGACATCG-CTTTCTC-TTCCAAGCTTAAG-TAGG-CAGAT-GGATGGATAT----TGA-AAGA-AATGAAAG-CAATAAT-AAA---TATTGTA-T-TTGGAAGCA-GATTG--G--AGATCATGAATGTTATTGTA-TTC
gi|17 : TTTAGAACATATAAATCACCAACCTTC-CTT-----TTTGAAGTTAAG-CAGAT-----------------T-AAGA-AA-GATCGATTTCTGTAACG---TCATGC--A-CTGTAATCAGAATTG--G--AG---ATGAGTTTCATTATA-TTCTTGAATGTAAAGA-TATTTGG-T-TATATGCGTA-GAT--TTTTT---T--AG-ATAG--------TCTGC-TCCAAA-CACC--CAACAAAA-TT----TGAA--CA----C-TTCCAA--AGATC--CT-G-TG-AGTATACGAAA----GCTTGGT--GTCT---TTTTATTTCTG-AA----AATC-AAAA-T------TAT-TGTCT
gi|19 : -AAGA-CATTGTG-T-AAATTGCGTT-GAA-ATTTTA------GATATAGAATATTGTTCTGC-TCCAAA-CA----------------------------TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTGTAT-TTTTA-TTACG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTTTTT-GTC-T----GTTT-------GAC-CCT-TTTATTTTGT-A-----ATTA-----TT-----A--A-TG--TGTA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCACG--TACCACTCC--A-TGGT-TTGAGTG-TAATAAACTGAACa
gi|2 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT-----------------T-T-ACCAGAA-GGTCTCTTA-TAG----GGCAAAAAC-T---------TGT-C---AACGGCAA----TGAATAACA-AAC--TTAGC--AAAAATTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GCT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGT-GCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTT-ATCAAAGAACTACGGGATCAG-TT-C--TACAAAAAATG-GG--C-ATGGTGATATAGTGCTAATTCTTCTAAGG--G-AG--
gi|2 : aaT-AAGA-CATTGTG-T-AAATTCCGTA-GAG-ATTTTT---T--GGTA-AGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAT-TTTTTGTGAAATTA-T-TC-TTCCAA--AGACC--CT-GGTA-GTTTAACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAA-CTCTTT-G-C-T----GTT--------GAC-CCC-TGTACTTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagacattgtgtaaattccgtagagattttttggtaagaatattgttctgctccaaacacccaaaattttttgtgaaattattcttccaaagaccctggtagtttaacgaaagttgtctttttattatgaaaatcaacaatattgtctgttctccaactctttgctgttgacccctgtactttgtaattattattgtatatatgtaaatacgtttcatgtaccccatgtaccattctatggtttgagtgtaataaactgaactga
gi|20 : aacggtttacggtgaaactgtacgatatcctttgtatttaccagaaggtctcttatagggcaaaaacttgtcaacggcaatgaataacaaacttagcaaaaattatctatatgtatgtacgcaaattatctgacaaaggaaaaataactgacccatggctttcatttatgaaaagtatttttgataaatgtgcctctcaaacatttggattgagcatggaacacggccttttaactctatgtgggttaaaacaattgttatcaaagaactacgggatcagttctacaaaaaatgggcatggtgatatagtgctaattcttctaagggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGCGTA-GAGAATTTTT---A--GATATAGAATATTGTTTTGT-CCAAAA-TA-C--CA--AAAA-CAATTGTGAACGCG-TGTC-CTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TGAGTAT---TTTTA-TTTTG-AA----AATC-GACA-A------TAC-TGTCT--TT---CTC-CTAACTCTTT-GTC-T----GGTT-------GGC-CTC-TGTAATTCGT-A-----ATTA-----TT-----A--A-TG----TA--C-CGG-TA-TA-T-AC-------GTTT------TAAAAT-G-TA-CC-TCATA--TACCATTCC-------------------ATAAACTGAACTG
gi|22 : GAATACTGTTCTGC---CAAA-AATT--CA--AAAA-AT---GTGCAATCT-TGTC-TTTTAATTAGATTTTCT-G-TC--TCTTAAGAAA----------------------TTA-------GA----TATG-ATTA-A------TAT-TATCAG-TT---CTC-CAGATGCCCG-CTT-T----ATTT-------GAT-------TATTGTAT-A-------TA-----CT-----AC-A-TG--TA-G--T-ATG-TA-AA-T-ACACAGTATATTT------T---AT-G-GA-CA-CCATG--TACCTTTCC--A-TGTT-TCGA
gi|24 : TACTTT-GTGATTACTAC----TACGG-AA-ATT---AC-AAA-AAAAAAATCT-A-TGTTAAGGTTAGAAC-TACAACTCACCA-CCTTC-C-T-----GCTCAAG-TAGG-CAGAT-GGAATAGCAC----TGT-AAGA-AATGAACG-CTTCTGT-ACT---TTATGCA-A-TTGTAATCA-AATTGTAGCTAG---AGGATTTTCCTTATA-CTCTTGAATGT---TA-TATTG-----ACATTGCGTA-GAG-ATTTTT---T--ttcaaaagtgttgtagaccacagcagtggta
gi|25 : TTTTAGAT--GATAT-GAAT--TGTTCTGC-TCCAAAATACC--AA--CAAG-TTTTTG--AACTCA-TGTC-TTCCAA--AGAG----T-G-TA-GTTTTAAGAAA----TTG---T--GTCT---TTTTA-TTTTG-AA----AATC-AACA-A------TAT-TTTCTG-TT---TGC-CAAACTCTGG-GTC-T----GTTT-------GAC-CCC-TGTAATTTG--A-----ATTA-----TT-----A--A-AA--TATA--T-ATG-TA-AA-T-AC-------ATTT------C---AT-G-T
gi|27 : ----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-AATTGAATAT-TGTCTG-TTAATCTC-CAAACTCG---GTC-T----GTTT-------GAT-CCT-TGTAATATGT-A-----ATTA-----TT-----ATTA-TA--TATAATT-ATG-TA-AAAT-AC-------GTTT------C---AT-G-TG-CC-TCGTG--TACCATTAC--G-TAGC-GTGAGTG-TAATAAACTGAA
gi|28 : GTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-TTACTAGAATTGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TCATCTTTA
gi|29 : aaacatatatttaattgaaaaagttgtactccaagttatattGAACTCA-TATC-TTCCAA--AGATC--TT-G-TA---TCTG---------------T--GTCT---TTTTA-TTTTG-AA----ACTC-AACA-A------TAT-TGTCTG-TT---CT----AACTCTTTAATA-T----G--T-------AAC-CCC-TGTA-----------------------------------------A--T-ATG-TA-AA-T-AC-------GTTT------C---AT-A-CA-CC-TCAGG--TACCATTCC--A-TGGC-TTGAGTG-TGATAAACTG
gi|3 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT----------------TT-T-ACTAGAATGGTCTCTTA-TAG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTTAATCAAAG-ACTACGGGATCAG-TTCC--TACAAAAAAT--GG--C-ATGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATTTA--TAGAAT-TTTTAAAACAAGTT-TTGAC-TG-CGAAAAATATTTT-AC-ATTACTAC----GGCGA-AA-ATT---AC-AAA-A----AATCT-A-TGTAAAGTTTAGAAC-TACAAACCACCA-CCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAAGACTGCATGC-AAGA-AATGAACG-CTTCTAT-ACA---TTATACA-A-CTATAACCA-AACTG--G--TG---ATGAATTTCATTTTATTTCTTGAATGT-AAGA-CATTGTG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTAAAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAATTTTTTGTGAAATTA-TGTC-TTCCAA--AGACC--CT-G-TA-GTTTTACGAAA----GT----T--GTCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTACTTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|30 : ------TAT-TGTCTA-TT---CTC-CTAATTCCCT-GTCTT----GTTCTATGAAAGAC-CCT-GGTGATGTGT-A-----A--A-----TA-----A--A-TGATTATA--CGATGTTA-AA-TGAC-------GCTC------A---ATGG-TA-CC-TCATG--TACCATTACAAA-TGGTATTGAATGCTACTAAGCTGAAC
gi|31 : atAACTCTTT-GT---------TT-------GAC-CCC-TGTATTTTGC-A-----ATTG-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-C---CATG---------CT--A-GGGT-TTGAGTG-TAATTAACTGAATTG
gi|32 : tcttttaaaataagaagtatatttgttacatcgaatccttctttGATCCCTTA-TTG----GGCGAAG-C-T---------TAT-C---AAC---AA----TGA-CAACG-AAT--TAAGT--ACGG-CTATTTACGT-GTATG---TAC-GTAA--CT-TGCACGACAA--AG-AAAGAGTAACAAATCCGTA-----AAT-AG-T-ATTT--TAT-----ACAATTGCAGTATTT--
gi|33 : CA-A------TAT-TGTCTG-TT---CTC-CAAACCCTTT-GTC-T----GCTT-------GAC-CCC-TGCAATTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTTCATGTAC---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGA
gi|34 : TA-TTTTG-AA----GATT-AATA-T------TAT-TGCCTG-TT---C-----ATCTCCTT-TAC-TTTTAATTT-------G-C-CCC-T--------T-A-------TG-----CT-----A--A-TG--T-----T-ATG-TA-AA-T-AT-------CTCT------T----T-G-TA-AC-TTATG--TACCATCCC--A-TGAT-TTTGATA-GAATAAACTGAACTGc
gi|35 : TTCTGT-ACG---TTATGCA-A-CTGTAATCA-AATGG--G--AG---ATGAATTTTATTATA--TCTTGAATGT-AAGA-TATTGGG-TAAAATTGCATACAAG-ATTTTT---TA-GATGTAGAATATTGTTCTGC-CCCAAA-CAC
gi|36 : gaGATCAG-TTTA--TACAAAAGCA--GGATC-ATAGTGATAT--CATCAGTTCGTCTAGAG--G-AC--ATAT-TA--TTAGAC-TTTTAAAACCA------GAA-TG-TGAAAAATACTTTAAT-ATTA-TAT----GTCAG-AA-GTTTAGAC-AA
gi|37 : GTTTACG-GTGAAACTGGGCGATATCCTTTTTTTATATAACA------AA-TTT-T-ACGAGAATGATCTCATA-TTGCAAATGTAAAA-CAT---------TGTGC---AA
gi|38 : aaaggtagcacacaaagttttat----T--GTAT---GTTTA-TTTTG-AA----AATC-AATA-A------TAT-TGTCTA-TT---ATC-CTGATTTTTC-ATC-T----GTTT-------TAC-CCCATGTATTGCAT-AT----ACTATACAGTT-----A--A-CG--CATA--T-
gi|4 : aactgGGTTGACC-TTGAAACTGAACGATATCC--TTTGTATGTAAC-------AA-TTTGT-ATAAGAATGGTCTCTTA-TTG----GGCAAAT-C-T---------TGT-----AACAGAAA----TGA-TAACA-AAC--TTAAT--AAAA-TTATCTATAT-GTATGATGTAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAATTGACCCGTG-----GAT-TT-T-A-TT--TTT-----GAAA----AGTATTT--TTGATAAG-TGTGGTTTC------T----TAAACATTTGAATCGA-GCATGGAAC-ACGG-A-AT-TTTA-AC-TCTATGTGGATTACAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--CAC-AAAAAT--GG--C-ACcac
gi|41 : gtaattttagcagagtctgcaaatgatttgcaggtggcgttgaatgaatttagtacctacagtaaagtatggagactgactgtaaatatcattaaaacaaaaattgtagtattttctaaaggtcaccaatccaaatgttctttcacttactatgggttatatattgaaacagccaatgaattcattatttcagatgtttgaagtcattagaaaaataagattatttgatctaccttatgactgtcagttagatttatttgataaagtagtggtacctgttttactatatgtatgtgaaatttggggttatgaaaatattgatattgaagaacgtgtccattcaaattttttaatacatacttaatttaaaaagcagtacaccaagttatatTT-GTC-T----GTGT-------GAC-CCT-TTTATTTTGA-A-----TTTA-----TT-----A--A-TG--TGTA--T-ATG-TA-AA-T-AC-------GTGT------C---AT-G-TA-CC-TCATG--TGC---TTC--A-TGGT-TTGAGTG-TGATTAATTGAACTG
gi|43 : AAAAAT--GA--C-AGGAGGATAT--ATCTACGTCTTCAAAAA--G-AG--TAATTCA--CAGCAT-TTTCAAAACAAAAT-TTCAA-TG-TGATTAATATTAG-AC-ATTATTAC----
gi|44 : acCTCTTT-GTC-T----GCTT-------GACGACC-TGTACTT-----------------------------------TATA--T-TTG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGAACTG
gi|45 : A----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACGCT---GTC-T----GTTT-------GAT-CCC-TGTAATATGT-A-----ATTA-----TT-----A--T-TA--CATA--T-ATG-TA-AA-T-AC-------GTTT------T---AT-G-TG-CC-TC
gi|47 : -TATATTATGT-AGATATATTA-----TT-----A----TG--TATA--T-TTG-TA----T-TC-------ATTTA-----T---AT-G-TT-CC-TCATG--TACCAGTAT--A-TGGT-TTGAGCG--AATAAATTGAACT
gi|5 : TTTGTG-GTGAAACTGGACGATATCC--TTTGTATGTATTTTTTTTTGG-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAATA-C-T---------TGT-C---AACAGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GTAA--AT-TATCCAACAA--AG-GAAAAATAAGTGACCCATG-----GGT-TT-T-A-TT--TTT-----TAAT----AGCATTC--TTGATCAA-TATGGGCTC------T----CTAACATTTGGATTAA-GCATTGAAC-ACAG-A-AT-TTTA-AC-TTTATGTGAACTAAAACAAC--Tta
gi|51 : aaaaaaaaaaaaacaagagagaaaataacaccgcctttgtaagcaagcacaggaagcttgatatgtttggggtcatttagaagaaaaataaaatcttgtttgatctaaccatttgactatcaatgatatttttctttttctcgatgaaagctgtgtggtacctgttctttgtactatatatataacatgtgataatttcggggttataaataaaatagaagaacgtgtccatttaaaattttgaaaacatactagtacttaattaaaaaagtagtacacaaagttatatgtTGTGA-----ATTA-----TT-----A--AATG--TATA--T-ATG-TA-AA-A-AC-------GTTT------C---AT-------------G--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|54 : ATG--TACCATTAT--A-AGGT-TTGAGCG--AATAAACTGAA
gi|55 : -TA-CC-TCATG--TACCATTGC--A-TGGT-TTGAGTA-----GAACTGAAtaaatt
gi|56 : a-A-TA--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGGCTC------T----CAAa
gi|7 : TCCTTCAAAGG--G-AG--TGATCTG--CGG------TTAAAA-AAATT---GAA-TG-TGAGGAATATTTG-AC-ATTGTTAC----AA--G-AA-ATT---TT-TGG-A----AAACT-T-TGTTAAATTTAGATC-TACTATTCAACA-CCTTT-C-T-----GTCGAAT-TAGG-CAGGT-GGAGTAAT-T----TATTAAGA-AATGAATG-CTTTTGT-AGG---TTATGTA-A-TTGTAACCA-ATTTG--G--AA---ATGAACTCCATTATA-TTCTGGAATGT-AAAG-TATTGAG-C-AAATTATGCA-GAA-ATTTTC---TA-AACATAGAA---TGTTAAGA-CCCAAA-TA-C--TA--TAAA--TATTGTTAACTTA-TGTC-TTCTAG--AGATT--AT-G-TA-TCTGTAATAAA----GT----T--CTCTACGTTTTA--TCTA-AAATTCAATT-AACG-G------TATATTTTTG-TC---GGA-TAGATTTTTT--TC-T----GTTT-------GAC-CCC-TG----------------TTA-----T-----------TG--CGTA--T-ATG-TA-AA-T-G------------------C---AT-G-CA-CC-TCATA--TTCCATT
gi|9 : gctcaatcgcacgtctctaggcGTTTACGCGTGAAACTGGACGAT-TCC--TTT-TATGTAAC-------AATTTT-T-ACTAGAATG--CTCTTATTTG----GGCAAAA-C-T---------TGT-C---AAC-GCAA----TGA-C-ACAGAACT-TTAGC--CAAA-TTgaaaaaaacctgaagt
blockSeqs : C TT G TTTTTTTGG G T T CAAA A A . G . G . A G T . A . ATG . . . GA A TC AGAGA A C T . AATTT TTGC AC . A AATACATACAA A C AC A G A AA A A CT G AT G C AG A TG T GA C AA A A A AT . G A G C A . TAG G AAAAA AA A A C G A T T TCCAA T . GGAATAAGACTGCA T . AT A . T C G TA CT ATC T A . T . A C GA AGAT AT T A C AAC AC ATTTTTT C . . TT TT . G G A GCTTGG GA ACG T A . ATTC . . ATTGAA A . AAT . A T TTTA TATGAAA G A A T G GATATAT TACAG AAATA TGA AT AT G T . A A ACAGTAT CATGTA AAA G . C . . A AA . A CT
blockSeqs : . . A AAA . . . . . . . . . G . . . . . . . . . . . . . TC . . C . . . . . . C T . . C . . . . . . . . . . A . A . . . C . A . A T . . . . C . . . . T A A . T A . . . . . . GGAATAACAC . . A . . A T . . . . . . . G . . . G TTA AT . . C A . TTTTTT A . . . . . . G C GTTG . AT . T . . . . . . . . . . . . . . . A T . TAC . . TTA . . . . . . G . A . . . . . . C . . . T
blockSeqs : . . G AAT . . . . . . . . . G . . . . . . . . . . . . . CT . . C . . . . . . C T . . C . . . . . . . . . . C . A . . . T . A . G T . . . . A . . . . A A A . C C . . . . . . GGATGGATAT . . C . . T G . . . . . . . G . . . G TA AT . . C C . ACAATT C . . . . . . A C TTG . C . C . . . . . . . . . . . . . . . A G . AT . . CA . . . . . . . . . . . . . . . C . . . T
blockSeqs : . . G AA . . . . . . . . . A . . . . . . . . . . . . . CT . . C . . . . . . C T . . C . . . . . . . . . . T . A . . . T . A . A T . . . . T . . . . A A T . C A . . . . . . GGAATAGCAC . . C . . A T . . . . . . . G . . . T TA AT . . C C . GTTTTT A . . . . . . G A GC . . . A . . . . . . . . . . . . . . . T T . AA . . AA . . . . . . . . . . . . . . . C . . . T
blockSeqs : . . G AA . . . . . . . . . A . . . . . . . . . . . . . CA . . T . . . . . . T T . . A . . . . . . . . . . T . G . . . T . G . A T . . . . G . . . . A A . . C T . . . . . . GGAGTAATT . . C . . A T . . . . . . . G . . . A T AC . . T C . ATTAG C . . . . . . G C GT . . . A . . . . . . . . . . . . . . . C T . AT . . C . . . . . . . . . . . . . . . C . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . TT . . T . . . . . . G T . . A . . . . . . . . . T . C . . . C . C . . . . . . . G . . . . A T . . . . . . . . C . . A C . . . . . . . T . . . G T AT . . C C . ATATT C . . . . . . G A GT . . . T . . . . . . . . . . . . . . . A T . AT . . A . . . . . . . . . . . . . . . C . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . GT . . T . . . . . . G T . . . . C . . . . . . . . . . . . . . . A . . . . . . . . . . . . A T . . . . . . . T . . . G T AT . . C A . TTT A . . . . . . G A GT . . . T . . . . . . . . . . . . . . . T G . AT . . A . . . . . . . . . . . . . . . A . . . T
blockSeqs : . . . . . . . . . . . . . . . G . . . . . . . A C . . . . . . . T . . . G A . . . C C . ATT C . . . . . . G A GT . . . A . . . . . . . . . . . . . . . A T . AT . . T . . . . . . . . . . . . . . . C . . . T
blockSeqs : . . . . . . G . . . G T . . . . T . AAT . . . . . . . T C GT . . . T . . . . . . . . . . . . . . . A A . AT . . A . . . . . . . . . . . . . . . C . . . T
blockSeqs : . . . A . . . A T . . . . . . . . . . . . . . . A . . . . A . . . . . . . . . . . . . . . C T . AT . . A . . . . . . . . . . . . . . . A . . . T
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . A G . AT . . T . . . . . . . . . . . . . . . C . . . G
blockSeqs : . . . T . . . . . . . . . . . . . . . T T . AT . . A . . . . . . . . . . . . . . . A . . . T
blockSeqs : . . . C . . . . . . . . . . . . . . . A T . AT . . A . . . . . . . . . . . . . . . C . . . T
blockSeqs : . . . . . . . . . . . . . . . . . T G . TT . . T . . . . . . . . . . . . . . . T . . . T
blockSeqs : . . . . . . . . . . . . . . T T . AT . . A . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . C T . AT . . A . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . A A . A . . A . . . . . . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . T A . T . . T . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : AA******** ********* *** **** ** ** ** ***** C** ** C** ** N**** A***** A** GGATAATAC****** C* *** A** T***** ATTT*** G* GT******** ******* AT***** A*** **
originalCons : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---AC-AAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACCA-CCTTC-C-T-----GTTGAAG-TAGG-CAGAT-GGAATAACAC----TGT-AAGA-AATGAACG-CTTCTGT-ACG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTT---T--GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAA-TTTTTGTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
finalCons : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAACAA--------TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TTC--A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGGC--AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTACN----ACGG-AA-ATT---AC-AAAA-----AATCTA--TGTTAAGTTTAGAAC-TACAANTCACCA-CCTTC-C-T-----GTTGAAG-TAGG-CAGATGGATAATAC------TGT-AAGA-AATGAACGC-TTCTGT-ACG---TTATGCAA--CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAG-ATTTTTT-----GGTATAGAATATTGTTCTGC-TCCAAA-CACC--CA--AAAATTT---GTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TAG-TTTTAAGAAAGT--------T--GTCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GAC-CCC-TGTANTTTGT-AAT-----TA-----TT-----AA---TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAATGGTGTATCCACCAATGTGGATTTTTTTTCAGCTGTAATGTAGGTGTGCGGCAAGGTGAATATTTGTTCCCATTTTTATTCTCTATGTATATTAATGATCTGGGGCAATATCTGTTAGAGAAAAAATATAATTGGAGGATGAACTTTTTTATGTTCTTTTTATGCCAATGATACTGTCATTCTGGCTGAAACGGCTGACGAATTATACATGTATATGTATCTTTGAGTGAATTTTGTTTATATTGTGAACAATGGATGTTGAACGTTGATATTAGTAAGACAAAAATATTAGGGTGTTTTTCTGAAAGGCCCAATGCTGAAAAGAGAATTAATTTTTTTTCAATAACACTGTTAAAGAAAATGCAAAAGAATTTAAAAACCTGGGATTTTTTCCCCCGCTCAAGTTCATTTGGCAAAGCTAAAAAAGATCTTTGTGAACAGGCAGTGTATGGATCGAGTTAGTAGAAAAAGTTACCTATCGACTGCCTGTCAATATTTAT
Unaligned ( gi|8 ): AATGTATTGTGTTCGTCAAGGATGACAAACCTATCCCTGTTTGTTTTTTATTAATATGATGCAATTGACTATTAAGAGACAAAAATCATTTACTGGGTCTTACAACAATATTGCCGGAGGAGTATGCCAAAAAGAATATTTTTATATGATTTATGCAAGCCGATGGCACGACAGTTAATTTTAAGCAGAATCTGGCAAATTAGTTTGCAGGTTAGCAATGCGTTGAAGTGAAATTAGATACCTACCTGCAAACTGGCTTGCGAATACTTACTGCGAATATTTAGACTAAAACAAAAATTGTAGTATTTTCTATAGGTTGACAACCCAAACTGCTCTTTCACCATAATAATGGATTACTATGTCTTGAAACAGGACAATGTATTTTCAATTATTCAAAAAAAAAAAA
Unaligned ( gi|15 ): GTCCGGGTCCTTTCGTAGATCAAAGAAGTATTTAACTGAATTAATGTACGAGATAATTAAAAAAAAAATCCGGTTGTATGATTTATCAATTGAATGTCAATTAGATTTATTTGATAAGGTTGTTGTACCAGTTTTATTGTATGCATTTGAAACATGGGGCTATGAAACCAATGAGATTATTGAGCTCCTGTACATCTAAGAGTTCTCAAACACATTTTTAAACCTTAAGAGCAGTACACCTAGTTTCATGGTGTACGGCGATACAGGCAGATAACCATTTTA
Unaligned ( gi|18 ): CATTATTTTCTGTAGATCAGGTTCTATTTAGAAAGCAAAGATCACTTGAGTGCCCAATCCGAAATAGCAATGTATATTGTGATAAGAAAAATTAGACAATTTAATTCACCTGTTGGCTGTCAGTTTTATGTGTGCAATGAGTTGGTCGTGCCAGCTTTGTTCTATGGTTGTGAAATTTGGGTTTTGAAAAACTCGATATTATTAATGGAGTACATCTTAATTAAATTTCTAACGGGCATGTTTTTAATTTAAAAAGCAGT
Unaligned ( gi|21 ): GAACAAGCATCAAAAGCTCTTTATGGTGTATTACGTAAGATTCGTTATTTCAATTTGGCTAAAATTGTCAGTTAGACTTGTTTGATAAAGTAAATCACCCAATTTTACTTTACTCTTGTGAAATTTGGGGTTATGAGAAAATGGACATTATTGAAAAAGTACACCTTAAATTTGTTTTAATTTATCTTGAATCTTAAGTCAAGTACCCCGAATTCTATGGTGTATGGGGA
Unaligned ( gi|23 ): GTCCTTTTGTAAGGCAAAGGAAGCATTAGCTGCACAAGCTCAGAAAAGCAATGTACGGATACATTAAAAAAAATCCCGATTTGGTCGATTGGCGTTTATTTTATGCATAAGGTTCGTTGTTTCCAGTTTTACTGTATGCATGTGAAAATATGCGGGCTATGAAAACTATTGATATTATTGAGCGCGTGCATTTGAGATTTCTAAAAACACATTTTTTAAA
Unaligned ( gi|26 ): ACAAAAATATTACTGGTCTTACAACAATATTGCCGAGAGTATGCAAAAAGAATTATTTTTATATATTTTATGCAGATGGCACAGTAATTTTAGCAGAATCTGCAAATTATTTGCAGGTAGCGTTGAGTGAATTTAGTACCTACTGCAAACTGGTTGGAAACTTACTGCGAATATTAGTAAAAC
Unaligned ( gi|39 ): TTAATTGGACGATTGTATATCGGTTTGATTTCTTTGATAAGTTGGTCATACCGTTTATACTCTACTGCTGTGAGAATTTGGATTTTCAAAAAATCGATATCATT
Unaligned ( gi|40 ): AAACCAACACCCCCCCCCCAAAAAAAACAAATACAAAAAAAAAAAACCGCCTCTGTGAGCAAGCGCAGAAAGGTATGTTTGGAGTCATTAGAAAAATAAGATT
Unaligned ( gi|42 ): AAATTGTAATGAATAAAGTATTGTTTAACACTACCATGCTACTTTATGGTTGTGAATTTGGGGTTACGAAAACATAGATATTATTGAACGAGTACATTTAA
Unaligned ( gi|46 ): ATGGAACATTAATTGAAAAAGTACATCTTAAACTTTTTGAAGATTTATTTTGGATTTTAAAAAGTAAGGCGGAATTTATGGTTGTATGGGGA
Unaligned ( gi|48 ): TTGTGTAAATACATGTAGTATGTACACATTCCAAGTACAATTTATGCACACTATGCATTCCTTTCTATTGTAAACCACAGGCGGTA
Unaligned ( gi|49 ): TCATTAGAAAAATAAAATTGTTTGATCTACCATTTGACTATCAGTGAGATTTTTTCGATAAAGCTGTGGTACCTGTTTTACTAT
Unaligned ( gi|50 ): AAATACATTTTTAAAAACCTTTAAAACAGTCCACTAGTTTCATGGTGTACGTCGAAACAGGTAGATATTCACTGT
Unaligned ( gi|52 ): GTCCATTTAAAATTTTTAAAACATATTTAATTTAAGAAGTAGTACACCAAGTTATATGGTTTACGG
Unaligned ( gi|53 ): TTTAACTGCAATAATGGTGTTCACCAAGGAGGAAACGTATCCCTGTTGGTTTTTTTT
Unaligned ( gi|57 ): GCACATACATTAATATACAGTTAACGCATATCACTGAG
Alignments
lowQualScore : 2222222222 111111111 1111 11 111 11111 11111 11111111111 11 11111 111 111111 11111 444444444444444 111 111111111 1111 111111111111 1111111111 111 1111
lowQualScore : 5 66 4 0 4444444444 5 5 0 0 4 9999 4 4 777777777 4 777 6 0000 5 5 11 66 5 5 000 5 77 5 66 5 44 99999 5 555 4 66 11111 9999 66 5 5 66666666666 5 5 888 5 5 5 77 6 5 0 66 0 00 66 4 2 66 2 66 4 66 0 4 66 2 5 7 55 5 5 4 4 0 00000 5 5 333 222222 666 6 1 1 6 5 44444 5 5 5 2 333333333333333 5 5 0 99 4 777 111 5 4 55 55 777 3 3 3 4 3 3 3 0 777777777 11 3 3 5 0000 888888888888 8 3 3 44 44 3 3 55 3 5555555555 33 111 2 1 2 5555 2 2 666666 2 2 333 2 1 1 4444 8888888 1 1 4 3 1 7777777 44444 44444 1111 22 22 1 1 1 1 3 5555555 777777 333 1 1 1 1 22 2 22 2 2 33
lowQualScore : . .. . . .......... . . . . . .... . . ......... . ... . .... . . .. .. . . ... . .. . .. . .. ..... . ... . .. ..... .... .. . . ........... . . ... . . . .. . . . .. . .. .. . . .. . .. . .. . . .. . . . .. . . . . . ..... . . ... ...... ... . . . . . ..... . . . . ............... . . . .. . ... ... . . .. .. ... . . . . . . . . ......... .. . . . .... ............ . . . .. .. . . .. . .......... .. ... . . . .... . . ...... . . ... . . . .... ....... . . . . . ....... ..... ..... .... .. .. . . . . . ....... ...... ... . . . . .. . .. . . ..
lowQualScore : 0 99 5 2 0000000000 0 0 4 3 4 4444 4 4 888888888 4 888 5 6666 0 0 99 99 0 7 000 7 99 7 99 0 22 44444 0 444 4 11 11111 4444 11 0 9 00000000000 7 7 666 7 7 7 99 7 7 2 99 1 66 11 4 7 99 0 11 4 11 2 2 99 0 0 0 11 0 0 4 4 9 44444 0 0 888 666666 111 7 0 0 7 7 33333 0 0 0 5 222222222222222 0 0 1 55 4 888 111 4 4 55 55 000 6 3 3 2 3 3 3 2 666666666 33 3 3 1 0000 222222222222 8 3 3 66 66 3 3 11 1 8888888888 99 888 7 9 7 3333 5 2 111111 1 2 999 2 9 9 0000 8888888 9 8 0 3 7 9999999 33333 33333 1111 44 44 7 8 8 8 6 9999999 000000 222 8 7 8 8 55 1 88 0 0 44
consensus : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----GACGG-AA-ATT---ACAAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACCA-CCTTC-CT-----GTT-GAAGT-AGG-CAGATGG--A-T-AACAC----TGT-AAGA-AATGAACG-CTTCTGTA-CG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAGATTTTT---T--GG-TATAGAATATTGTTCTGC-TCC-AAACACCNA--A-AA-A---T-T-T--GTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TG--TCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GACC-CC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
Reference ( family-473 ) : CGGTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACCGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGNCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--TACAAAAAAT--GG--C-ACGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATCTA--TAGAAT-TTTTAAAACAAATT-TTGAA-TG-CGAAAAATATTTT-AC-ATTACTAC----NACGG-AA-ATT---ACAAA-A----AATCT-A-TGTTAAGTTTAGAAC-TACAANTCACCA-CCTTC-CT-----GTT-GAAGT-AGG-CAGATGG--A-T-AATAC----TGT-AAGA-AATGAACG-CTTCTGTA-CG---TTATGCA-A-CTGTAACCA-AATTG--G--AG---ATGAATTTCATTATA-TTCTTGAATGT-AAGA-CATTGNG-T-AAATTGCGTA-GAGATTTTT---T--GG-TATAGAATATTGTTCTGC-TCC-AAACACCCA--A-AA-A---T-T-T--GTGAACTCA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TG--TCT---TTTTA-TTNTG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GACC-CC-TGTANTTTGT-A-----ATTA-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|1 : GGTTTACG-GTGAAACTGGACAATATCC--TTTGTATGTAAC-------AA-TTT-T-TCNNNNNNNNNNNNNNN-NNN----NNNNNNN-C-TTTCCTAGAATGT-CCTTATTGGCAAAACTTGT-CAACG-GCCGATGATCAAAAAA-TTAGCCAAATAATGTA---TACTGCAATCATGTAT-TGAT----AG-AAAAAATAATTGACACATGAA---AAT-TTACGA-TTGATAT-----GAAA----AG-ATTT--TTGATAAACTGTGG-CTC------T----CAAAT-TTTGGATT---GCATGG-AC-ACGG-CGAT-TTT--AC-TCTATGTGGATTAAAACAAT--TGTTAATCAAAG-ACTA--AGATC---TCTC--TACACAAAATTGGG--C-ATGGTGATAT--TGCTAAT--TTCTCAGG--G-AG--TTATTTA--TA-AAT-TTTAAAAACAGGTT-TTGAATTG-CAAAAAA-ATTTT-AC--TTACTACTCTGAACGA-AAGATT---ACAAACA----AATCT-ACTGTTAAGTTTA-AAC-TA-AAATCACCA-CTCTT-CT-----GTT-G-AGT-AGGCCAGATGGGAA-T-AACAC----TGT-AAGATATTGAACG----CTGTA-CGTCATTATACACATCTGTAA-CA-AACTG--G--TG---ATGAATTTCATTTTA-TTCTTGAATGT-AAGATCATTGTGAT-AATCTGCGTA-GAAATGTTT---TA-GG-TATGGAATATTGTTCTGC-TCC-AAACACCAA--ATAACA---T-T-T--GTGAAATTACTGTCTTTCCAA--AGATC--CTGG-TACGTTTTAAGAAAGTTTGT----TG--TCT---TGTTA-TTATGAAA----AATCAAACACA------TAT-TGTCTGTTT---CTCTCAAACTCTTT-GTC-T----GCTTAC-----GA---AC-TGTAC---GT-A------------------------------TACA--T-TTG-TAGAA-T--C-------GTTG------C---AT-GTTA-CCTTCATGGTTA-CATTAC--ATTGTT-TTGAGTG-TAATAAAATGAAC
gi|10 : atacgttggtttcgtcaaggagaaaatttgtcccgttttttttattttatttatattaatgatttagagatatttgaaagacagattacgaatattattgagagtatgcaagaagaatcatttttataattatatgaagttgtttatctagatctcatttcatgcagatgacacagtaattttagcagagtctgcaaattatttgcaggtagagttggaagagtaaattatgcaatcttactgtggatattagtaaaacaaaaattgtagtattttctaaaggtcgacaactcaaatgttcttttacttacaatgggttatacatgtatgttgaaacagtcaatgaattcaatattttcaagatctggttcattttgtaaagaaaaaaaaaccgcctctgtgagcaagcacaaattgctatgtttggagtcattagaaaaataagattatttgatctactttttgactgtcagttagatttattcgataaagtagtggtgcctgttttactacatgcatgtggaatttggggttatgaaaatattgatattgtagaacgtgcccatttaatatttttaaaacatatacttattttagaaagtagtacaccaagttatat-CT-----TTT-AAAGT-AGG-CAGGTGG--AAT-AACAC----TGT-AAGA-AATGAAC----TATGTA-CG---TTATGCA-T-ATGTAACCA-AATTG--T--AG---AATAATTTCAGTTTA-TTTTTTAATAT-AAGG-CATTTTG-T-GAATTGCGTC-GAGATTTTT---TTAAG-TATATAATATTGTTCTGC-TCC-AAACACCAA--A-AC-A---T-TAG--GTGAACTTA-TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GC----TG--TGTC--TTTTA-TTATG--A----AATT-AACA-A------TAT-TGTCTG-TT---TTC-CAAACTCTTT-GTC-T----GTTA-------GACC-CC-TGTAATTTGT-A-----ATTA-----AC-----A--C-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CG-TC-----TACGTTTAC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|11 : TTG--G--AG---ATGAATTTCATTACA-TTCTTGAATGC-AAGA-CATTGGG-T-
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcTCATTATA-TTCTTGAATGC-AAGA-CATTGGG-T-AAACTGCGTA-GAGATcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|11 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggACC-A------CAT-TGTCTG-TT---CTC-CTAACTCTTT-GTC-T----GTTT-------GACC-CC-TGTAATTTGT-A-----AATA-----TT-----ATGA-TA--TATA----ATG-TA-AT-TAAT-------GTTT------C---AT-G-TACCC-CCATT--TA-CATTCC--A-TGGT-TTGAGTG-TAATAAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccacattgtctgttctcctaactctttgtctgtttgacccctgtaatttgtaaatattatgatatataatgtaattaatgtttcatgtacccccatttacattccatggtttgagtgtaataaactga
gi|12 : aataagatttatgtaaaataagcacatacccctccaaacaataaagatgagatcaagtgtcttggagatgaatttcattacattcttgaatgcaagacattgggtcattatattcttgaatgcaagacattgggtaaactgcgtagagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCTGACAAGAAGAGAATAAAAATCAACCCATAAGAGAGATATT-C-A-TA--TATAATTTGAAA----AGTATATACTTAATAAA-TGTGGACACAATACATACAACAAATAATTGGATTGAAGCATGAAACCACGGAC-ATATTTAGACATCTA-ATGGATTAAA-CAACAATGATAATCAAGA-ACTACGAGATCAAATTCCCTTACAAAAAAT--GG--CGACGATGATAT--TGCCA-TTCT-CTAAGG--A-AAGATTATCTAAATAGAATATTCTAAAACAAATTATTGAA-TGGCGGAAAATATTTT-AC-ATTACTAC----CACGGAAA-ATT---ACAAA-T----TATCTAA-TGTT
gi|13 : cT-GAAGT-AGG-CAGAT-------------------T-AAGA-AAGGAGCG-ATTCTGTA-CG---TCATGCA-A-CTGTAATCA-AATTG--G--AG---ATGAGTGTCATTATA-TTCTTGAATGT-AAGA-TATTGGG-T-ATATTGCGTA-GA-ATTTTT---T-----T-TAGA----TACTCTGCTTCC-AAACACCAAC-A-AA-A---T-T-T--GTGAA--CA----C-TTCCAA--AGATC--TT-G-TA-GTATTACGAAA----GTTG--TG--TCT---TTTTA-TTTTG-AA----AATC-AACA-T------TAT-TGTCTA-TT---CTC-CAAATTTCTT-GTC-T----GTTT-------GAAC-CC-TGTGATGTGT-A-----ATTA-----TTAAATAA--A-TG--TATA--T-ATG-TA-AA-T-AC-------GCTT------C---AT-G-TA-CC-TCATG--TACC
gi|14 : -GTATG---TAC-GCGA--AT-CATCTGACAA--AG-GGAAAATAATCGACCCATG-----GAT-TT-C-A-TT--TTT-----GAAA----AGTATTC--TTAATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGAAAC-ACGG-C-AT-TTTA-AC-TCTATGTGGATTAAAACAAC--TGTTAATCAAAG-ACTACGAGATCAA-TTCC--TACAAAAATC--GG----AAATTGATAT--TGCTAATTCTTCTAAGG--A-AG--TTATCTA--TAGAAT-TTCTAAAACAAATT-TTGAA-TG-CGGAAAATATTTT-AC-ATTACTAC----CACGG-AA-ATT---ACAAA-A----TATCT-A-Tg
gi|16 : aTCC--TCTCAAAAGT--TG--C-TCGATAATGT--TTCTGAGTTATCAAAGGTGGTAG--TGACTTT--TAGAAG-TTGTATAACAA-TT-TTGAA-TA-TGAGGAATATTTG-AC-ATT-TTAC----AAAGA-CA-ATTA--AGAAA-A----AAACT-A-TGTTAAAGGCAG-AC-TGCAAGACATCG-CTTTCTCTTCCAAGCT-TAAGT-AGG-CAGATGG--A-TGGATAT----TGA-AAGA-AATGAAAG-CAATAATA-AA---TATTGTA-T-TTGGAAGCA-GATTG--G--AGATCATGAATGTTATTGTA-TTC
gi|17 : TTTAGAACATATAAATCACCAACCTTC-CT-----TTTTGAAGTTAAG-CAGAT-------------------T-AAGA-AA-GATCGATTTCTGTAACG---TCATGCA---CTGTAATCAGAATTG--G--AG---ATGAGTTTCATTATA-TTCTTGAATGTAAAGA-TATTTGG-T-TATATGCGTA-GAT-TTTTT---T--AG--ATAG--------TCTGC-TCC-AAACACCCAACA-AA-A---T-T-----TGAA--CA----C-TTCCAA--AGATC--CT-G-TG-AGTATACGAAA----GCTTGGTG--TCT---TTTTATTTCTG-AA----AATC-AAAA-T------TAT-TGTCT
gi|19 : -AAGA-CATTGTG-T-AAATTGCGTT-GAAATTTTA------GA-TATAGAATATTGTTCTGC-TCC-AAACA--------------------------------TGTC-TTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TG--TGTAT-TTTTA-TTACG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTTTTT-GTC-T----GTTT-------GACC-CT-TTTATTTTGT-A-----ATTA-----TT-----A--A-TG--TGTA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCACG--TACCACTCC--A-TGGT-TTGAGTG-TAATAAACTGAACa
gi|2 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT-----------------T-T-ACCAGAA-GGTCTCTTA-TAG----GGCAAAAAC-T---------TGT-C---AACGGCAA----TGAATAACA-AAC--TTAGC--AAAAATTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GCT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGT-GCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTT-ATCAAAGAACTACGGGATCAG-TT-C--TACAAAAAATG-GG--C-ATGGTGATATAGTGCTAATTCTTCTAAGG--G-AG--
gi|2 : aaT-AAGA-CATTGTG-T-AAATTCCGTA-GAGATTTTT---T--GG-TA-AGAATATTGTTCTGC-TCC-AAACACCCA--A-AA-T---T-T-TTTGTGAAATTA-T-TC-TTCCAA--AGACC--CT-GGTA-GTTTAACGAAA----GT----TG--TCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAA-CTCTTT-G-C-T----GTT--------GACC-CC-TGTACTTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaagacattgtgtaaattccgtagagattttttggtaagaatattgttctgctccaaacacccaaaattttttgtgaaattattcttccaaagaccctggtagtttaacgaaagttgtctttttattatgaaaatcaacaatattgtctgttctccaactctttgctgttgacccctgtactttgtaattattattgtatatatgtaaatacgtttcatgtaccccatgtaccattctatggtttgagtgtaataaactgaactga
gi|20 : aacggtttacggtgaaactgtacgatatcctttgtatttaccagaaggtctcttatagggcaaaaacttgtcaacggcaatgaataacaaacttagcaaaaattatctatatgtatgtacgcaaattatctgacaaaggaaaaataactgacccatggctttcatttatgaaaagtatttttgataaatgtgcctctcaaacatttggattgagcatggaacacggccttttaactctatgtgggttaaaacaattgttatcaaagaactacgggatcagttctacaaaaaatgggcatggtgatatagtgctaattcttctaagggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGCGTA-GAGAATTTT---T--AGATATAGAATATTGTTTTGT-CCA-AAATACCAA--A-AACA---A-T-T--GTGAACGCG-TGTC-CTCCAA--AGATC--CT-G-TA-GTTTTAAGAAA----GT----TGAGTAT---TTTTA-TTTTG-AA----AATC-GACA-A------TAC-TGTCT--TT---CTC-CTAACTCTTT-GTC-T----GGTT-------GGCC-TC-TGTAATTCGT-A-----ATTA-----TT-----A--A-TG----TA--C-CGG-TA-TA-T-AC-------GTTT------TAAAAT-G-TA-CC-TCATA--TACCATTCC-------------------ATAAACTGAACTG
gi|22 : GAATACTGTTCTGC---C-AAAAATTCA--A-AA-A---A-T----GTGCAATCT-TGTC-TTTTAATTAGATTTTCT-G-TC--TCTTAAGAAA----------------------TTA-------GA----TATG-ATTA-A------TAT-TATCAG-TT---CTC-CAGATGCCCG-CTT-T----ATTT-------GAT-------TATTGTAT-A-------TA-----CT-----AC-A-TG--TA-G--T-ATG-TA-AA-T-ACACAGTATATTT------T---AT-G-GA-CA-CCATG--TACCTTTCC--A-TGTT-TCGA
gi|24 : TACTTT-GTGATTACTAC----TACGG-AA-ATT---ACAAA-AAAAAAATCT-A-TGTTAAGGTTAGAAC-TACAACTCACCA-CCTTC-CT-----GCT-CAAGT-AGG-CAGATGGA-A-T-AGCAC----TGT-AAGA-AATGAACG-CTTCTGTA-CT---TTATGCA-A-TTGTAATCA-AATTGTAGCTAG---AGGATTTTCCTTATA-CTCTTGAATGT---TA-TATTG-----ACATTGCGTA-GAGATTTTT---T--ttcaaaagtgttgtagaccacagcagtggta
gi|25 : TTTTAGAT--GA-TAT-GAAT--TGTTCTGC-TCCAAAATACCAA--C-AA-G---T-T-T--TTGAACTCA-TGTC-TTCCAA--AGA----GT-G-TA-GTTTTAAGAAA----TTG---TG--TCT---TTTTA-TTTTG-AA----AATC-AACA-A------TAT-TTTCTG-TT---TGC-CAAACTCTGG-GTC-T----GTTT-------GACC-CC-TGTAATTTG--A-----ATTA-----TT-----A--A-AA--TATA--T-ATG-TA-AA-T-AC-------ATTT------C---AT-G-T
gi|27 : ----TG--TCT---TTTTA-TTATG-AA----AATC-AACA-AATTGAATAT-TGTCTG-TTAATCTC-CAAACTCG---GTC-T----GTTT-------GATC-CT-TGTAATATGT-A-----ATTA-----TT-----ATTA-TA--TATAATT-ATG-TA-AAAT-AC-------GTTT------C---AT-G-TG-CC-TCGTG--TACCATTAC--G-TAGC-GTGAGTG-TAATAAACTGAA
gi|28 : GTTTACG-GTGAAACTGGACGATATCC--TTTGTATGTAAC-------AA-TTT-TTACTAGAATTGTCTCTTA-TTG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-CAACA-AAC--TTAGC--AAAA-TCATCTTTA
gi|29 : aaacatatatttaattgaaaaagttgtactccaagttatattGAACTCA-TATC-TTCCAA--AGATC--TT-G-TA---TCTG---------------TG--TCT---TTTTA-TTTTG-AA----ACTC-AACA-A------TAT-TGTCTG-TT---CT----AACTCTTTAATA-T----G--T-------AACC-CC-TGTA-----------------------------------------A--T-ATG-TA-AA-T-AC-------GTTT------C---AT-A-CA-CC-TCAGG--TACCATTCC--A-TGGC-TTGAGTG-TGATAAACTG
gi|3 : CGGTTTACG-GTGAAACTGTACGATATCC--TTTGTAT----------------TT-T-ACTAGAATGGTCTCTTA-TAG----GGCAAAA-C-T---------TGT-C---AACGGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAACTGACCCATG-----GAT-TT-C-A-TT--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGCCTC------T----CAAACATTTGGATTGA-GCATGGAAC-ACGG-C-CT-TTTA-AC-TCTATGTGGGTTAAAACAAT--TGTTAATCAAAG-ACTACGGGATCAG-TTCC--TACAAAAAAT--GG--C-ATGGTGATAT--TGCTAATTCTTCTAAGG--G-AG--TTATTTA--TAGAAT-TTTTAAAACAAGTT-TTGAC-TG-CGAAAAATATTTT-AC-ATTACTAC----GGCGA-AA-ATT---ACAAA-A----AATCT-A-TGTAAAGTTTAGAAC-TACAAACCACCA-CCTTC-CT-----GTT-GAAGT-AGG-CAGATGGA-A-T-AAGACTGCATGC-AAGA-AATGAACG-CTTCTATA-CA---TTATACA-A-CTATAACCA-AACTG--G--TG---ATGAATTTCATTTTATTTCTTGAATGT-AAGA-CATTGTG-T-AAATTGCGTA-GAGATTTTT---T--GG-TAAAGAATATTGTTCTGC-TCC-AAACACCCA--A-AA-ATTTT-T-T--GTGAAATTA-TGTC-TTCCAA--AGACC--CT-G-TA-GTTTTACGAAA----GT----TG--TCT---TTTTA-TTATG-AA----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACTCTTT-GTC-T----GTTT-------GACC-CC-TGTACTTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-CCATG--TACCATTCT--A-TGGT-TTGAGTG-TAATAAACTGAACTGA
gi|30 : ------TAT-TGTCTA-TT---CTC-CTAATTCCCT-GTCTT----GTTCTATGAAAGACC-CT-GGTGATGTGT-A-----A--A-----TA-----A--A-TGATTATA--CGATGTTA-AA-TGAC-------GCTC------A---ATGG-TA-CC-TCATG--TACCATTACAAA-TGGTATTGAATGCTACTAAGCTGAAC
gi|31 : atAACTCTTT-GT---------TT-------GACC-CC-TGTATTTTGC-A-----ATTG-----TT-----A--A-TG--TATA--T-ATG-TA-AA-T-AC-------GTTT------C---AT-G-TA-C---CATG---------CT--A-GGGT-TTGAGTG-TAATTAACTGAATTG
gi|32 : tcttttaaaataagaagtatatttgttacatcgaatccttctttGATCCCTTA-TTG----GGCGAAG-C-T---------TAT-C---AAC---AA----TGA-CAACG-AAT--TAAGT--ACGG-CTATTTACGT-GTATG---TAC-GTAA--CT-TGCACGACAA--AG-AAAGAGTAACAAATCCGTA-----AAT-AG-T-ATTT--TAT-----ACAATTGCAGTATTT--
gi|33 : CA-A------TAT-TGTCTG-TT---CTC-CAAACCCTTT-GTC-T----GCTT-------GACC-CC-TGCAATTTGT-A-----ATTA-----TT-----A--T-TG--TATA--T-ATG-TA-AA-T-AC-------GTTTCATGTAC---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGA
gi|34 : TA-TTTTG-AA----GATT-AATA-T------TAT-TGCCTG-TT---C-----ATCTCCTT-TAC-TTTTAATTT-------G-CC-CC-T--------T-A-------TG-----CT-----A--A-TG--T-----T-ATG-TA-AA-T-AT-------CTCT------T----T-G-TA-AC-TTATG--TACCATCCC--A-TGAT-TTTGATA-GAATAAACTGAACTGc
gi|35 : TTCTGTA-CG---TTATGCA-A-CTGTAATCA-AATGG--G--AG---ATGAATTTTATTATA--TCTTGAATGT-AAGA-TATTGGG-TAAAATTGCATACAAGATTTTT---TA-GA-TGTAGAATATTGTTCTGC-CCC-AAACAC
gi|36 : gaGATCAG-TTTA--TACAAAAGCA--GGATC-ATAGTGATAT--CATCAGTTCGTCTAGAG--G-AC--ATAT-TA--TTAGAC-TTTTAAAACCA------GAA-TG-TGAAAAATACTTTAAT-ATTA-TAT----GTCAG-AA-GTTTAGACAA
gi|37 : GTTTACG-GTGAAACTGGGCGATATCCTTTTTTTATATAACA------AA-TTT-T-ACGAGAATGATCTCATA-TTGCAAATGTAAAA-CAT---------TGTGC---AA
gi|38 : aaaggtagcacacaaagttttat----TG--TAT---GTTTA-TTTTG-AA----AATC-AATA-A------TAT-TGTCTA-TT---ATC-CTGATTTTTC-ATC-T----GTTT-------TACC-CCATGTATTGCAT-AT----ACTATACAGTT-----A--A-CG--CATA--T-
gi|4 : aactgGGTTGACC-TTGAAACTGAACGATATCC--TTTGTATGTAAC-------AA-TTTGT-ATAAGAATGGTCTCTTA-TTG----GGCAAAT-C-T---------TGT-----AACAGAAA----TGA-TAACA-AAC--TTAAT--AAAA-TTATCTATAT-GTATGATGTAC-GCAA--AT-TATCTGACAA--AG-GAAAAATAATTGACCCGTG-----GAT-TT-T-A-TT--TTT-----GAAA----AGTATTT--TTGATAAG-TGTGGTTTC------T----TAAACATTTGAATCGA-GCATGGAAC-ACGG-A-AT-TTTA-AC-TCTATGTGGATTACAACAAC--TGTTAATCAAAG-ACTACGAGATCAG-TTCC--CAC-AAAAAT--GG--C-ACcac
gi|41 : gtaattttagcagagtctgcaaatgatttgcaggtggcgttgaatgaatttagtacctacagtaaagtatggagactgactgtaaatatcattaaaacaaaaattgtagtattttctaaaggtcaccaatccaaatgttctttcacttactatgggttatatattgaaacagccaatgaattcattatttcagatgtttgaagtcattagaaaaataagattatttgatctaccttatgactgtcagttagatttatttgataaagtagtggtacctgttttactatatgtatgtgaaatttggggttatgaaaatattgatattgaagaacgtgtccattcaaattttttaatacatacttaatttaaaaagcagtacaccaagttatatTT-GTC-T----GTGT-------GACC-CT-TTTATTTTGA-A-----TTTA-----TT-----A--A-TG--TGTA--T-ATG-TA-AA-T-AC-------GTGT------C---AT-G-TA-CC-TCATG--TGC---TTC--A-TGGT-TTGAGTG-TGATTAATTGAACTG
gi|43 : AAAAAT--GA--C-AGGAGGATAT--ATCTACGTCTTCAAAAA--G-AG--TAATTCA--CAGCAT-TTTCAAAACAAAAT-TTCAA-TG-TGATTAATATTAG-AC-ATTATTAC----
gi|44 : acCTCTTT-GTC-T----GCTT-------GACGACC-TGTACTTT-----------------------------------ATA--T-TTG-TA-AA-T-AC-------GTTT------C---AT-G-TA-CC-TCATG--TACCATTAC--A-TGGT-TTGAGTG-TAATAAACTGAACTG
gi|45 : A----AATC-AACA-A------TAT-TGTCTG-TT---CTC-CAAACGCT---GTC-T----GTTT-------GATC-CC-TGTAATATGT-A-----ATTA-----TT-----A--T-TA--CATA--T-ATG-TA-AA-T-AC-------GTTT------T---AT-G-TG-CC-TC
gi|47 : -TATATTATGT-AGATATATTA-----TT-----A----TG--TATA--T-TTG-TA----T-TC-------ATTTA-----T---AT-G-TT-CC-TCATG--TACCAGTAT--A-TGGT-TTGAGCG--AATAAATTGAACT
gi|5 : TTTGTG-GTGAAACTGGACGATATCC--TTTGTATGTATTTTTTTTTGG-TTT-T-ACTAGAATGGTCTCTTA-TTG----GGCAATA-C-T---------TGT-C---AACAGCAA----TGA-TAACA-AAC--TTAGC--AAAA-TTATCTATAT-GTATG---TAC-GTAA--AT-TATCCAACAA--AG-GAAAAATAAGTGACCCATG-----GGT-TT-T-A-TT--TTT-----TAAT----AGCATTC--TTGATCAA-TATGGGCTC------T----CTAACATTTGGATTAA-GCATTGAAC-ACAG-A-AT-TTTA-AC-TTTATGTGAACTAAAACAAC--Tta
gi|51 : aaaaaaaaaaaaacaagagagaaaataacaccgcctttgtaagcaagcacaggaagcttgatatgtttggggtcatttagaagaaaaataaaatcttgtttgatctaaccatttgactatcaatgatatttttctttttctcgatgaaagctgtgtggtacctgttctttgtactatatatataacatgtgataatttcggggttataaataaaatagaagaacgtgtccatttaaaattttgaaaacatactagtacttaattaaaaaagtagtacacaaagttatatgtTGTGA-----ATTA-----TT-----A--AATG--TATA--T-ATG-TA-AA-A-AC-------GTTT------C---AT-------------G--TACCATTCC--A-TGGT-TTGAGTG-TAATAAACTGAACT
gi|54 : ATG--TACCATTAT--A-AGGT-TTGAGCG--AATAAACTGAA
gi|55 : -TA-CC-TCATG--TACCATTGC--A-TGGT-TTGAGTA-----GAACTGAAtaaatt
gi|56 : a-A-TA--TAT-----GAAA----AGTATTT--TTGATAAA-TGTGGGCTC------T----CAAa
gi|7 : TCCTTCAAAGG--G-AG--TGATCTG--CGG------TTAAAA-AAATT---GAA-TG-TGAGGAATATTTG-AC-ATTGTTAC----AA--G-AA-ATT---TTTGG-A----AAACT-T-TGTTAAATTTAGATC-TACTATTCAACA-CCTTT-CT-----GTC-GAATT-AGG-CAGGTGG--AGT-AAT-T----TATTAAGA-AATGAATG-CTTTTGTA-GG---TTATGTA-A-TTGTAACCA-ATTTG--G--AA---ATGAACTCCATTATA-TTCTGGAATGT-AAAG-TATTGAG-C-AAATTATGCA-GAAATTTTC---TA-AA-CATAGAA---TGTTAAGA-CCC-AAATA-CTA--T-AA-A---TAT-T--GTTAACTTA-TGTC-TTCTAG--AGATT--AT-G-TA-TCTGTAATAAA----GT----TC--TCTACGTTTTA--TCTA-AAATTCAATT-AACG-G------TATATTTTTG-TC---GGA-TAGATTTTTT--TC-T----GTTT-------GACC-CC-TG----------------TTA-----T-----------TG--CGTA--T-ATG-TA-AA-T-G------------------C---AT-G-CA-CC-TCATA--TTCCATT
gi|9 : gctcaatcgcacgtctctaggcGTTTACGCGTGAAACTGGACGAT-TCC--TTT-TATGTAAC-------AATTTT-T-ACTAGAATG--CTCTTATTTG----GGCAAAA-C-T---------TGT-C---AAC-GCAA----TGA-C-ACAGAACT-TTAGC--CAAA-TTgaaaaaaacctgaagt
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAATGGTGTATCCACCAATGTGGATTTTTTTTCAGCTGTAATGTAGGTGTGCGGCAAGGTGAATATTTGTTCCCATTTTTATTCTCTATGTATATTAATGATCTGGGGCAATATCTGTTAGAGAAAAAATATAATTGGAGGATGAACTTTTTTATGTTCTTTTTATGCCAATGATACTGTCATTCTGGCTGAAACGGCTGACGAATTATACATGTATATGTATCTTTGAGTGAATTTTGTTTATATTGTGAACAATGGATGTTGAACGTTGATATTAGTAAGACAAAAATATTAGGGTGTTTTTCTGAAAGGCCCAATGCTGAAAAGAGAATTAATTTTTTTTCAATAACACTGTTAAAGAAAATGCAAAAGAATTTAAAAACCTGGGATTTTTTCCCCCGCTCAAGTTCATTTGGCAAAGCTAAAAAAGATCTTTGTGAACAGGCAGTGTATGGATCGAGTTAGTAGAAAAAGTTACCTATCGACTGCCTGTCAATATTTAT
Unaligned ( gi|8 ): AATGTATTGTGTTCGTCAAGGATGACAAACCTATCCCTGTTTGTTTTTTATTAATATGATGCAATTGACTATTAAGAGACAAAAATCATTTACTGGGTCTTACAACAATATTGCCGGAGGAGTATGCCAAAAAGAATATTTTTATATGATTTATGCAAGCCGATGGCACGACAGTTAATTTTAAGCAGAATCTGGCAAATTAGTTTGCAGGTTAGCAATGCGTTGAAGTGAAATTAGATACCTACCTGCAAACTGGCTTGCGAATACTTACTGCGAATATTTAGACTAAAACAAAAATTGTAGTATTTTCTATAGGTTGACAACCCAAACTGCTCTTTCACCATAATAATGGATTACTATGTCTTGAAACAGGACAATGTATTTTCAATTATTCAAAAAAAAAAAA
Unaligned ( gi|15 ): GTCCGGGTCCTTTCGTAGATCAAAGAAGTATTTAACTGAATTAATGTACGAGATAATTAAAAAAAAAATCCGGTTGTATGATTTATCAATTGAATGTCAATTAGATTTATTTGATAAGGTTGTTGTACCAGTTTTATTGTATGCATTTGAAACATGGGGCTATGAAACCAATGAGATTATTGAGCTCCTGTACATCTAAGAGTTCTCAAACACATTTTTAAACCTTAAGAGCAGTACACCTAGTTTCATGGTGTACGGCGATACAGGCAGATAACCATTTTA
Unaligned ( gi|18 ): CATTATTTTCTGTAGATCAGGTTCTATTTAGAAAGCAAAGATCACTTGAGTGCCCAATCCGAAATAGCAATGTATATTGTGATAAGAAAAATTAGACAATTTAATTCACCTGTTGGCTGTCAGTTTTATGTGTGCAATGAGTTGGTCGTGCCAGCTTTGTTCTATGGTTGTGAAATTTGGGTTTTGAAAAACTCGATATTATTAATGGAGTACATCTTAATTAAATTTCTAACGGGCATGTTTTTAATTTAAAAAGCAGT
Unaligned ( gi|21 ): GAACAAGCATCAAAAGCTCTTTATGGTGTATTACGTAAGATTCGTTATTTCAATTTGGCTAAAATTGTCAGTTAGACTTGTTTGATAAAGTAAATCACCCAATTTTACTTTACTCTTGTGAAATTTGGGGTTATGAGAAAATGGACATTATTGAAAAAGTACACCTTAAATTTGTTTTAATTTATCTTGAATCTTAAGTCAAGTACCCCGAATTCTATGGTGTATGGGGA
Unaligned ( gi|23 ): GTCCTTTTGTAAGGCAAAGGAAGCATTAGCTGCACAAGCTCAGAAAAGCAATGTACGGATACATTAAAAAAAATCCCGATTTGGTCGATTGGCGTTTATTTTATGCATAAGGTTCGTTGTTTCCAGTTTTACTGTATGCATGTGAAAATATGCGGGCTATGAAAACTATTGATATTATTGAGCGCGTGCATTTGAGATTTCTAAAAACACATTTTTTAAA
Unaligned ( gi|26 ): ACAAAAATATTACTGGTCTTACAACAATATTGCCGAGAGTATGCAAAAAGAATTATTTTTATATATTTTATGCAGATGGCACAGTAATTTTAGCAGAATCTGCAAATTATTTGCAGGTAGCGTTGAGTGAATTTAGTACCTACTGCAAACTGGTTGGAAACTTACTGCGAATATTAGTAAAAC
Unaligned ( gi|39 ): TTAATTGGACGATTGTATATCGGTTTGATTTCTTTGATAAGTTGGTCATACCGTTTATACTCTACTGCTGTGAGAATTTGGATTTTCAAAAAATCGATATCATT
Unaligned ( gi|40 ): AAACCAACACCCCCCCCCCAAAAAAAACAAATACAAAAAAAAAAAACCGCCTCTGTGAGCAAGCGCAGAAAGGTATGTTTGGAGTCATTAGAAAAATAAGATT
Unaligned ( gi|42 ): AAATTGTAATGAATAAAGTATTGTTTAACACTACCATGCTACTTTATGGTTGTGAATTTGGGGTTACGAAAACATAGATATTATTGAACGAGTACATTTAA
Unaligned ( gi|46 ): ATGGAACATTAATTGAAAAAGTACATCTTAAACTTTTTGAAGATTTATTTTGGATTTTAAAAAGTAAGGCGGAATTTATGGTTGTATGGGGA
Unaligned ( gi|48 ): TTGTGTAAATACATGTAGTATGTACACATTCCAAGTACAATTTATGCACACTATGCATTCCTTTCTATTGTAAACCACAGGCGGTA
Unaligned ( gi|49 ): TCATTAGAAAAATAAAATTGTTTGATCTACCATTTGACTATCAGTGAGATTTTTTCGATAAAGCTGTGGTACCTGTTTTACTAT
Unaligned ( gi|50 ): AAATACATTTTTAAAAACCTTTAAAACAGTCCACTAGTTTCATGGTGTACGTCGAAACAGGTAGATATTCACTGT
Unaligned ( gi|52 ): GTCCATTTAAAATTTTTAAAACATATTTAATTTAAGAAGTAGTACACCAAGTTATATGGTTTACGG
Unaligned ( gi|53 ): TTTAACTGCAATAATGGTGTTCACCAAGGAGGAAACGTATCCCTGTTGGTTTTTTTT
Unaligned ( gi|57 ): GCACATACATTAATATACAGTTAACGCATATCACTGAG