lowQualScore : 1 1 1 77777777 1 1 11 1 44 4444444444444 33333 6666666666666666 1 3 777777777777777777777 44444 11 222222 555555555555 111 2 22 2 1 222 111 22222 11 444 222 22222 2222 22 2222222 1 1 1 1 1 1 111 1 1 1 1111111 1 1111111 555 1111111111111111
lowQualScore : 7 3 6 1 3 55555555 6 99 7 6 5 2 3 2 2 5 33 7 6 5 3 33 2 9999999999999 4 2 6 33333 5555555555555555 0 2 3 2 2 888888888888888888888 6 22222 33 222222 555555555555 777 0 3 55 0 0 888 000 77777 22 6 000 555 6 7 3 99 6 00000 6666 0 00 99 0 8 5 9999999 0 6 0 0 5 9 6 3 6 666 6 3 6 3 99 5 1 8888888 5 3 5 7 99 6 66 5 6666666 5 88 5 5 5 5 888 66 111 6666666666666666
lowQualScore : . . . . . ........ . .. . . . . . . . . .. . . . . .. . ............. . . . ..... ................ . . . . . ..................... . ..... .. ...... ............ ... . . .. . . ... ... ..... .. . ... ... . . . .. . ..... .... . .. .. . . . ....... . . . . . . . . . ... . . . . .. . . ....... . . . . .. . .. . ....... . .. . . . . ... .. ... ................
lowQualScore : 0 3 7 5 0 55555555 0 00 3 7 0 5 0 5 5 0 33 3 0 5 0 00 5 0000000000000 0 5 0 33333 0000000000000000 0 0 8 0 2 888888888888888888888 0 00000 88 222222 888888888888 555 0 2 55 0 0 888 222 22222 00 0 000 222 7 3 7 00 6 00000 4444 8 66 00 8 0 0 2222222 6 0 6 8 4 8 0 3 7 222 7 3 7 3 22 7 4 6666666 7 5 7 0 11 0 99 0 2222222 0 22 0 0 0 5 888 99 999 0000000000000000
consensus : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCAATTTGATTTCATNGGTGTACGTNTTAACCTNAGGNTTATGGATGGCGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTG-GGCGACACATGCTTNAAAGGACTAAAGAATCTTNGTGCTTTNGTAGGANTAGGAGTGCAGGTTCTCTGTTTTTTTCCTACATGGTGATTTGGGGGGNGGGGGGGTAGAATTNAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTCNANCAAGGGTTGAGCAATCTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTGTACAAAGA-AGATTTGACTTTTTTNT--CGTGTCATAAT------TTCCTGG-G-AAAA--AAT--A---AAGTGTGGCAGTTA----GCCAAGGT---AACAAATGAAAGTAAAATGTG-TGGCAGTTAAT-CTTTTTTC--GGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--ATCACGCCCTTTG-TTAAATCGATACAAATT-CAATT-----ACATTCAAATAT-TTGATTCTAATTTTT-TAAAAAATTGA-TTTT----CGAAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCAGTCCATCCGTAGACGCGTGTGTG-TC-TGTTAGCTAAACA--GTTTTC-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TATGTTTTCTTTGTATACAAATTGTTTAATT
Reference ( gi|1 ) : CTGCACATCGAATATGTCGCATGTT-TTTTCTTACGTGGTGACATTCAATTTGATTTCATAGGTGTACGTTTTAACCTT---C---TAAATGAAGATTTGAATGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTTCAAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTATTTATTTTTTTCCTACATGATGATTTGGAGGGTGGGGGA-TAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTAAGCAATTTGATTGTTTCTGAATGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAGGACAGGTTTGATTTTTTTAT--CGTGTCATAATCAA---TTCTTGA-ACAAAA--AAT--A---AAGTGTGGCAGTTA----GTCAAGGT---AACAA-TGAAAGTAAAATGTG-TGGCAGTT-AT-CTTTTTTG--GGATTT-ATGGAAAATACT-CTTTTGAAAGGAGG-AACATATCAAA-CCTTTG-TTAAATCGATACAAATT-CATTT-----ACATTCAAAT-T-TTGATTCTAG-TTTT-TAAAAAATTGA-TGTT----TG-AACCAGAAATTG-ATTTTATATCAATAAATTCTCTCTTTCAGTCTATCCGTAGA-GCGTGTGTG-TC-TGTTAGCTAAACA--TTTTTC-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GTCTTTTTTT-TTCGTC--GT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTCC--GCATATATGTTTTCTTTGNNNNNNNNNNNNNNNNTT
gi|5 : CTGCACATCGAATTTGTCGCATATTATTTTCTTACGTGGTGACATTCAATTTGATTT
gi|14 : ccCTGCACATCGAATTTGTCGCATGTT-TTTTCTTACATGGTGATATTCAATTTGATTTCATGGGTGTACGTTTTAACCTTAGGCTTATAGATGGAAATTTGAATGATAGCATGACTTTACGTTTTGTTCTGTGCGGCGACACATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttttttcctacatggtgattggagggtgggggtagaattgagtgggtatattatttgaagtggtaactttgtatcactcttaactttaagcaagggttgagcaatttgattgtttttgaacggttctcctgttttgtctttgcacatctctt
gi|4 : cCACATTGAATTTGCCGCATGTT-TTTTATTACGTGGTGACATT------GGTTTCATTGGTGTACGTGTTAACCTG---A---TGGATGGCGATTTGAACGATAACATGGCTTTACGTTT--------------------G-TTCAAAGGACTAAAGAATCTTAGTGTTTTGGTAGGAGTAGGAGTGCAGGTTCTCTGTTTTTT-CCTACATGGTGATTTGGGGGGGGGGGGGGTAGAATTTAGTGGGTATATTATTT-------------TGTATTACTCTTAACTTCTATCAAGGGTTGAGCAATCTGATTGTTTCTGAATGGTTCTCCTGAAGATTTCTGT-----------------TCAC-TTATACAAGGAAAGGTTTGATTTTTTTTTTTCGTGTCATA-T------TTCCTGA-A-AAAA--AATTTA---AAGTGTGGCAGTTA----GTCAAGAT---AACAA-TGAAAGTAAAATGTG-TGGCAGTT-AT-CTTTTTTC--GGAT--------------T-CTTTTGAAAGGAGG-AGC--ATCACA-CCTTTG-TTAAATCGATACAGAT
gi|15 : TGATAGCATGGCCTTACGTTTTGTTCTGTGAGGCGACACATGCTTGAAAGGACTAAAGAATCTTCGTGCTTTTGTAGGATTAGGAGTGCAGGTTCTTTG-TTTTTTCCTACATGGTGATT
gi|5 : TTTTTTTCCTACATGGTGATT-GGAGGGTGGGGG--TAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTAAGCAAGGGTTGAGCAATTTGATTGTTTTTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TT
gi|2 : ccctgcacatcgaatttgtcgcatattattttcttacgtggtgacattcaatttgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngTG-----GTTTGTTTTTCAAATACACCCCATCTCCTTATACAAAGA-AAATTTGACTTTTTGTTG-CGTGTCA--ATCAAAAATTCCTGATACAAAATAGAT--AGATAAGTGTGGCAGTTATTAGGTCAAGGTCACAACAA-TGAAAGTAA--TGTGATGGCAGTT-ATTCTTTTTTTCCGGATTTCATGGAAAATACT-CTTTTGAAGGCAGATAGCAT-TCACG-CTTGTGGTTACA--GAT-CAAATAACATTTCAAGTACATTCAAAA-TATTGATTCTAA-TTTTCTAAAAAATTGAATGTTGCCGTA-AACCAGAAATTG-ATTTTATATCAATAAATTC-----TTCATTC-----------GCGTTCCAG-TCACGTAAGCTAAACACGTTTTGCGCG-AAGAT-GGTTGGAGGATGAT-TTGGGCAGAGATCGTCATTTTTTATCAGACTCTTTTCGTTCATCGAGTAA-------TCGTCTTCACAA-TAATGGTACCACACAATCTTCCGAGC-TAT-TGTTTTTCTTG
gi|7 : a-TTGTACAAAAA-AGATTTGACTTTTTTGT------TCATAAT------TTCCTGG-G---AA--AAT--A---AAGTGTG------------CTAAGGT---AACAAATGAAAGTAAAATGTG--GACAGTTAAT-CTTTTTTC--AGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--ATCAAGCCCTTTG-TTAAATCAATACAATTT-CAATT-----ACATTCAAATAA-TTGATTCTAATTTTT-TAAAAAATTGA-TTTT----CGAAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCAGTCCATCCGTAGACCCGTGTGTGTTC-TGTTAGCTAAACA--GTTTTC-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTTttatggagaattagtgtctatgaaagcactactcattataagaccaaaatatctata
gi|3 : TGTACAAAAA-AGATTTGACTTTTTTGT------TCATAAT------TTCCTGG-G---AA--AAT--A---AAGTGTG------------CTAAGGT---AACAAATGAAAGTAAAATGTG--GACAGTTAAT-CTTTTTTC--AGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--ATCAAGCCCTTTG-TTAAATCAATACAATTT-CAATT-----ACATTCAAATAA-TTGATTCTAATTTTT-TAAAAAATTGA-TTTT----CGAAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCAGTCCATCCGTAGACCCGTGTGTGTTC-TGTTAGCTAAACA--GTTTTC-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTT-ATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-ATT-ATGGTAGCAA---AT-TTCC--GC---TATGTTTTCTTTG
gi|6 : TTTG-TTAAATCGATACAAATT-CAATT-----ACATTCAAAG-T-TTGATTCTGG-TTTT-AAAAAAA--GA-TTTT----CG-AACCAGAAATTA-ATTTCATATCAATAAATTCTCTCTTTCAGTCCATCCGTAGA-GCATGTGTG-TC-TGATACCTTAACA--TATTTC-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTCTAATC-GATGTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TGTGTTTTCTTTaatacaaattggtttaattcatatttagaccaaatatctacctcgaagcgacagtttaactggttaatgtggctacagttaagcgctcacgtgacttcggttggtc
gi|10 : -TTAAATCGAT----------TTA-----ACATTCAAAT-T-TAAA-------------AAAAAATTGA-TGTT----CG-AACCAGAAATTG-ATTTTATATCAATGAATTGTCTCTTTCAGTCTATCCGTAGA-GCGTGTGTG-TC-TGTTAGCTAAACA--GTTTTC-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTctatacaaattgtttaattcatatttagaccaaatatctacctcgaagcgacagttttcccgtaaaaatgtactacagttaacactcacgtgacctcggttgtccac
gi|8 : GTGTGTG-TC-TGTTAACTAAACA--GTTTTC-CG-AAG-T-GTTTG--AGAT-AC-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--AT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTGC--GC---TATATTTTCTTTGTATACAAATTGTTTAATT
gi|9 : tT-AT-TGATGCA-------TCA-TTTTAATC-GACTTTTTTC-TTTATC--GT-A-------TT-TCTT-AA-A-T-ATGTTAGCAC---ATCTTCC--GC---TATGTTTTCCTTGTATATACATTGTTTAATTcatatctagaccaaatacctacctcgaagcggccgtcaaacgtgatacagttacactcacgtgacttcggt
gi|11 : TC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-A-T-ATGGTAGCAA---ATCTTCC--GC---TATGTTTTCTTTGAATACAAATTGTTTAATTcatattttgaccaaatatctacctcgaagcgacagtttaccccgtaaaaatgtgctacggttagcactcacgtgacttcggttgttcacc
gi|13 : TTTTC-TTCATC--GT-ACAGTGTATC-TCTT-AC-A-T-ATGGTTGCAC---ATCTTCC--GC---TATGTTTTCTTcatatttagaccaaatatctacctcgaagcgacagttaactggttaatgtgctacagttagcgctcacgtgacttcggttgtccac
gi|12 : TT-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GCATATATGTTTTCTTTGTATACAAATTGTTTAATTgtatacaaattgtttaattcatatttagaccaaatatctactacttgaagcgacaaattaccacgtaaaataagctacagtagcactcacgtgacttcgg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTCAAATGCTAACAAATACCTATATCTCGAAGCGGCAGTTGTGCTATAGTTAGCACTCACGTGACTTCGATTGCCCA
Unaligned ( gi|17 ): CTTTGTATACAAATTGTTTAATTCATATTTCGACCAAATATCTACTTCAA
Unaligned ( gi|18 ): GCTACAGTTAGCACTCACGTGACTTCGGTTTTCCACC
Alignments
lowQualScore : 1 55555555 3 22222 333333333333 22222 111111111 3333333333333 22222222222 111 11 11 11 11 111 111111 111 111 11 1 1 11 1 1 1 1 1111111 1111111 111
lowQualScore : 0 2 1 1 88888888 0 6 0 3 3 0 5 1 1 1 0 3 3 7 0 77 6 1 6 11 1 0 0 55555 6 222222222222 8 8 8 1 99999 8 666666666 99 0000000000000 99999999999 0 111 0 88 66 11 88 22 5 8 11 8 111 1 666666 3 111 77 55 111 44 7 5 7 1 6 66 1 5 5 5 1 5 1 77 5 0 6666666 5 1 5 4 66 4 4444444 4 66 4 4 4 777 66 555 4 4
lowQualScore : . . . . ........ . . . . . . . . . . . . . . . .. . . . .. . . . ..... . ............ . . . . ..... . ......... .. ............. ........... . ... . .. .. .. .. .. . . .. . ... . ...... . ... .. .. ... .. . . . . . .. . . . . . . . .. . . ....... . . . . .. . ....... . .. . . . ... .. ... . .
lowQualScore : 0 5 0 0 00000000 7 7 7 2 2 0 7 0 0 0 7 2 2 3 7 77 7 0 7 77 0 7 7 00000 5 222222222222 0 0 0 0 66666 0 000000000 44 2222222222222 44444444444 8 888 8 66 88 00 88 44 0 0 00 0 444 4 444444 5 555 33 00 777 00 3 5 3 7 7 00 4 7 7 7 4 7 4 99 0 0 2222222 0 7 0 4 11 4 4444444 4 33 4 4 4 888 11 666 4 4
consensus : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCAATTTGATTTCATNGGTGTACGTTTTAACCT-A----T-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGAG-AAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
Reference ( family-4688 ) : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCAATTTGATTTCATNGGTGTACGTNTTAACCTNAGGNTTATGGATGGCGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTG-GGCGACACATGCTTNAAAGGACTAAAGAATCTTNGTGCTTTNGTAGGANTAGGAGTGCAGGTTCTCTGTTTTTTTCCTACATGGTGATTTGGGGGGNGGGGGGGTAGAATTNAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTCNANCAAGGGTTGAGCAATCTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTGTACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGGG-AAAAAAT--A-------AAGTGTGGCAGTTA----GCCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
gi|1 : CTGCACATCGAATATGTCGCATGTT-TTTTCTTACGTGGTGACATTCAATTTGATTTCATAGGTGTACGTTTTAACCT------TCTAAATGAAGATTTGAATGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTTCAAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTATTTATTTTTTTCCTACATGATGATTTGGAGGGT-GGGGGATAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTAAGCAATTTGATTGTTTCTGAATGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAGGACA-GGTTTGATTTTTTTAT--CGTGTCA-T---AATCAATTCTTGAACAAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAAC-A--ATGAAAGTAAAATGTG-TGGCAGTT-ATCTTTTTT--GGGATTT-ATGGAAAATACT-CTTTTGAAAGGAGG-AACATAT-CA-AACCTTTGTTAAATCGATACAAAT------TCATTTACATTCAAA-T-TTTGATTCTAG-TTTTTAAAAAATTGA---TGTTTG--AACCAGAAATTG-ATTTTATATCAATAAATTCTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-TTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GTCTTTTTTT-TTCGTC--GT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGNNNNNNNNNN-NNNNNNTT
gi|10 : TTAAATCG------AT------TTA---ACATTCAA---ATTTAA----A-------AAAAAATTGA---TGTTCG--AACCAGAAATTG-ATTTTATATCAATGAATTGTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTT
gi|11 : TC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-A-T-ATGGTAGCAA---ATCTTCC--GC---TA-TGTTTTCTTTGAATACAAATT-GTTTAATT
gi|12 : TT-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGTATACAAATT-GTTTAATTcatatttagaccaaatatctacctcgaagcgacagttaactggttaatgtgctacagttagcgctcacgtgacttcggttgtccac
gi|13 : TTTTC-TTCATC--GT-ACAGTGTATC-TCTT-AC-A-T-ATGGTTGCAC---ATCTTCC--GC---TA-TGTTTTC-TTGTATACAAATT-GTTTAATTcatatttagaccaaatatctaccttgaagcgacagtttaccccgtaaaaatgtgctacagttagcactcacgtgacttcggttgtccacc
gi|14 : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACATGGTGATATTCAATTTGATTTCATGGGTGTACGTTTTAACCTTAGGCTTATAGATGGAAATTTGAATGATAGCATGACTTTACGTTTTGTTCTGTGCGGCGACACATGcatatttagaccaaatatctactacttgaagcgacaaattaccacgtaaaataagctacagtagcactcacgtgacttcgg
gi|15 : cGATAGCATGGCCTTACGTTTTGTTCTGTGAGGCGACACATGCTTGAAAGGACTAAAGAATCTTCGTGCTTTTGTAGGATTAGGAGTGCAGGTTCTTTG-TTTTTTCCTACATGGTGATT
gi|17 : tCTTTGTATACAAATT-GTTTAATT
gi|2 : TG-----GTTTGTTTTTCAAATACACCCCATCTCCTTATACAAAGA-A-AATTTGACTTTTTGTTG-CGTGTCAATCAAAAA---TTCCTGAT-ACAAAAT--AGATAGATAAGTGTGGCAGTTATTAGGTCAAGGTCACAACAATGAAAGTAA--TGTGATGGCAGTTATTCTTTTTTTCCGGATTTCATGGAAAATACTC-TTTTGAAGGCAGATAGC--ATTCACGCTTGTGGTTACA--GAT-CAAATAACATTTCAAGTACATTCAAAATATT-GATTCTAATTTTCTAAAAAATTGAATGTTGCCGTAAACCAGAAATTG-ATTTTATATCAATAAATTCT-TCATTCGCGT---TCC--AGTCACGTA-----------AGCTAAACACGTTTTGCGCG-AAGAT-GGTTGGAGGATGAT-TTGGGCAGAGATCGTCATTTTTTATCAGACTCTTTTCGTTCATCGAGTAA-------TCGTCTTCACAA-TAATGGTACCACACAATCTTCCGAGC---TATTGTTTTTCTTGTcatatttcgaccaaatatctacttcaa
gi|3 : aTGTACAAAAA-A-GATTTGACTTTTTTGT------TCA-T---AAT---TTCCTGGG-AAAA--T--A-------AAGTGTG------------CTAAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTT-ATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-ATT-ATGGTAGCAA---AT-TTCC--GC---TA-TGTTTTCTTTGAATACAAATTGGTTTAATTtatggagaattagtgtctatgaaagcactactcattataagaccaaaatatctata
gi|4 : CACATTGAATTTGCCGCATGTT-TTTTATTACGTGGTGACATT------GGTTTCATTGGTGTACGTGTTAACCTGA------TGGATGGCGATTTGAACGATAACATGGCTTTACGTTT-GTTC--------------------AAAGGACTAAAGAATCTTAGTGTTTTGGTAGGAGTAGGAGTGCAGGTTCTCTGTTTTTT-CCTACATGGTGATTTGGGGGGGGGGGGGGTAGAATTTAGTGGGTATATTATTT-------------TGTATTACTCTTAACTTCTATCAAGGGTTGAGCAATCTGATTGTTTCTGAATGGTTCTCCTGAAGATTTCTGT-----------------TCAC-TTATACAAGGA-AAGGTTTGATTTTTTTTTTTCGTGTCA-T---A-T---TTCCTGAA-AAAAAATTTA-------AAGTGTGGCAGTTA----GTCAAGATAACAA---TGAAAGTAAAATGTG-TGGCAGTTA-TCTTTTTT--CGGATT---------------CTTTTGAAAGGAGG-AGC--AT-CACA-CCTTTGTTAAATCGATACAGAT------catatttagaccaaatatctacctcgaagcgacagtttaactggttaatgtggctacagttaagcgctcacgtgacttcggttggtc
gi|5 : CTGCACATCGAATTTGTCGCATATTATTTTCTTACGTGGTGACATTCAATTTGATTT
gi|5 : ccGTTTTTTTCCTACATGGTGATT-GGAGGGTGGGG--GTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTAAGCAAGGGTTGAGCAATTTGATTGTTTTTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttttttcctacatggtgattggagggtgggggtagaattgagtgggtatattatttgaagtggtaactttgtatcactcttaactttaagcaagggttgagcaatttgattgtttttgaacggttctcctgttttgtctttgcacatctctt
gi|6 : ccctgcacatcgaatttgtcgcatattattttcttacgtggtgacattcaatttgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA--GTTTGATTCTGGTTTTA-AAAAAA--GA---TTTTCG-AA-CCAGAAATT-AATTTCATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGA-GCATGTGTG-TCTGATACCTTAACA-TATTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTCTAATC-GATGTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TG-TGTTTTCTTTCTATACAAATT-GTTTAATT
gi|7 : -TTGTACAAAAA-A-GATTTGACTTTTTTGT------TCA-T---AAT---TTCCTGGG-AAAA--T--A-------AAGTGTG------------CTAAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTTcatatttagaccaaatatctacctcgaagcgacagttttcccgtaaaaatgtactacagttaacactcacgtgacctcggttgtccac
gi|8 : GTGTGTG-TCTGTTAACTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AC-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--AT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTGC--GC---TA-TATTTTCTTTGTATACAAATT-GTTTAATT
gi|9 : tT-AT-TGATGCA-------TCA-TTTTAATC-GACTTTTTTC-TTTATC--GT-A-------TT-TCTT-AA-A-T-ATGTTAGCAC---ATCTTCC--GC---TA-TGTTTTCCTTGTATATACATT-GTTTAATTcatatctagaccaaatacctacctcgaagcggccgtcaaacgtgatacagttacactcacgtgacttcggt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCAAATGCTAACAAATACCTATATCTCGAAGCGGCAGTTGTGCTATAGTTAGCACTCACGTGACTTCGATTGCCCA
Unaligned ( gi|18 ): GCTACAGTTAGCACTCACGTGACTTCGGTTTTCCACC
Alignments
lowQualScore : 1 666666666 2 111 22222 333333333333 22222 111111111 3333333333333 22222222222 111 11 11 11 111 111111 111 111 11 1 1 11 1 1 1 1 1111111 1111111 111
lowQualScore : 0 2 1 999999999 0 3 3 2 6 3 3 7 777 6 0 55555 6 222222222222 8 8 8 1 99999 8 666666666 99 0000000000000 99999999999 0 111 0 88 66 11 88 77 5 8 11 8 111 1 666666 3 111 77 55 111 44 7 5 7 1 6 66 1 5 5 5 1 5 1 77 5 0 6666666 5 1 5 4 66 4 4444444 4 66 4 4 4 777 66 555 4 4
lowQualScore : . . . ......... . . . . . . . . ... . . ..... . ............ . . . . ..... . ......... .. ............. ........... . ... . .. .. .. .. .. . . .. . ... . ...... . ... .. .. ... .. . . . . . .. . . . . . . . .. . . ....... . . . . .. . ....... . .. . . . ... .. ... . .
lowQualScore : 0 5 0 000000000 7 2 2 5 7 2 2 3 000 7 7 00000 5 222222222222 0 0 0 0 66666 0 000000000 44 2222222222222 44444444444 8 888 8 66 88 00 88 66 0 0 00 0 444 4 444444 5 555 33 00 777 00 3 5 3 7 7 00 4 7 7 7 4 7 4 99 0 0 2222222 0 7 0 4 11 4 4444444 4 33 4 4 4 888 11 666 4 4
consensus : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCAATTTGATTTCATNGGTGTACGTTTTAACCT-N-------TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGAG-AAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
Reference ( family-4688 ) : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCAATTTGATTTCATNGGTGTACGTTTTAACCTAT-------TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGAG-AAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
gi|1 : CTGCACATCGAATATGTCGCATGTT-TTTTCTTACGTGGTGACATTCAATTTGATTTCATAGGTGTACGTTTTAACCTTC-------TAAATGAAGATTTGAATGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTTCAAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTATTTATTTTTTTCCTACATGATGATTTGGAGGGTGGGGGA-TAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTAAGCAATTTGATTGTTTCTGAATGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAGGACA-GGTTTGATTTTTTTAT--CGTGTCA-T---AATCAATTCTTGAACAAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAAC-A--ATGAAAGTAAAATGTG-TGGCAGTT-ATCTTTTTT--GGGATTT-ATGGAAAATACT-CTTTTGAAAGGAGG-AACATAT-CA-AACCTTTGTTAAATCGATACAAAT------TCATTTACATTCAAA-T-TTTGATTCTAG-TTTTTAAAAAATTGA---TGTTTG--AACCAGAAATTG-ATTTTATATCAATAAATTCTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-TTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GTCTTTTTTT-TTCGTC--GT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGNNNNNNNNNN-NNNNNNTT
gi|10 : TTAAATCG------AT------TTA---ACATTCAA---ATTTAA----A-------AAAAAATTGA---TGTTCG--AACCAGAAATTG-ATTTTATATCAATGAATTGTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTT
gi|11 : TC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-A-T-ATGGTAGCAA---ATCTTCC--GC---TA-TGTTTTCTTTGAATACAAATT-GTTTAATT
gi|12 : TT-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGTATACAAATT-GTTTAATTcatatttagaccaaatatctacctcgaagcgacagttaactggttaatgtgctacagttagcgctcacgtgacttcggttgtccac
gi|13 : TTTTC-TTCATC--GT-ACAGTGTATC-TCTT-AC-A-T-ATGGTTGCAC---ATCTTCC--GC---TA-TGTTTTC-TTGTATACAAATT-GTTTAATTcatatttagaccaaatatctaccttgaagcgacagtttaccccgtaaaaatgtgctacagttagcactcacgtgacttcggttgtccacc
gi|14 : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACATGGTGATATTCAATTTGATTTCATGGGTGTACGTTTTAACCT-TAGGCTTATAGATGGAAATTTGAATGATAGCATGACTTTACGTTTTGTTCTGTGCGGCGACACATGcatatttagaccaaatatctactacttgaagcgacaaattaccacgtaaaataagctacagtagcactcacgtgacttcgg
gi|15 : cGATAGCATGGCCTTACGTTTTGTTCTGTGAGGCGACACATGCTTGAAAGGACTAAAGAATCTTCGTGCTTTTGTAGGATTAGGAGTGCAGGTTCTTTG-TTTTTTCCTACATGGTGATT
gi|17 : tCTTTGTATACAAATT-GTTTAATT
gi|2 : TG-----GTTTGTTTTTCAAATACACCCCATCTCCTTATACAAAGA-A-AATTTGACTTTTTGTTG-CGTGTCAATCAAAAA---TTCCTGAT-ACAAAAT--AGATAGATAAGTGTGGCAGTTATTAGGTCAAGGTCACAACAATGAAAGTAA--TGTGATGGCAGTTATTCTTTTTTTCCGGATTTCATGGAAAATACTC-TTTTGAAGGCAGATAGC--ATTCACGCTTGTGGTTACA--GAT-CAAATAACATTTCAAGTACATTCAAAATATT-GATTCTAATTTTCTAAAAAATTGAATGTTGCCGTAAACCAGAAATTG-ATTTTATATCAATAAATTCT-TCATTCGCGT---TCC--AGTCACGTA-----------AGCTAAACACGTTTTGCGCG-AAGAT-GGTTGGAGGATGAT-TTGGGCAGAGATCGTCATTTTTTATCAGACTCTTTTCGTTCATCGAGTAA-------TCGTCTTCACAA-TAATGGTACCACACAATCTTCCGAGC---TATTGTTTTTCTTGTcatatttcgaccaaatatctacttcaa
gi|3 : aTGTACAAAAA-A-GATTTGACTTTTTTGT------TCA-T---AAT---TTCCTGGG-AAAA--T--A-------AAGTGTG------------CTAAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTT-ATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-ATT-ATGGTAGCAA---AT-TTCC--GC---TA-TGTTTTCTTTGAATACAAATTGGTTTAATTtatggagaattagtgtctatgaaagcactactcattataagaccaaaatatctata
gi|4 : CACATTGAATTTGCCGCATGTT-TTTTATTACGTGGTGACATT------GGTTTCATTGGTGTACGTGTTAACCTGA-------TGGATGGCGATTTGAACGATAACATGGCTTTACGTTT-GTTC--------------------AAAGGACTAAAGAATCTTAGTGTTTTGGTAGGAGTAGGAGTGCAGGTTCTCTGTTTTTT-CCTACATGGTGATTTGGGGGGGGGGGGGGTAGAATTTAGTGGGTATATTATTT-------------TGTATTACTCTTAACTTCTATCAAGGGTTGAGCAATCTGATTGTTTCTGAATGGTTCTCCTGAAGATTTCTGT-----------------TCAC-TTATACAAGGA-AAGGTTTGATTTTTTTTTTTCGTGTCA-T---A-T---TTCCTGAA-AAAAAATTTA-------AAGTGTGGCAGTTA----GTCAAGATAACAA---TGAAAGTAAAATGTG-TGGCAGTTA-TCTTTTTT--CGGATT---------------CTTTTGAAAGGAGG-AGC--AT-CACA-CCTTTGTTAAATCGATACAGAT------catatttagaccaaatatctacctcgaagcgacagtttaactggttaatgtggctacagttaagcgctcacgtgacttcggttggtc
gi|5 : CTGCACATCGAATTTGTCGCATATTATTTTCTTACGTGGTGACATTCAATTTGATTT
gi|5 : ccGTTTTTTTCCTACATGGTGATT-GGAGGGTGGGG--GTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTAAGCAAGGGTTGAGCAATTTGATTGTTTTTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttttttcctacatggtgattggagggtgggggtagaattgagtgggtatattatttgaagtggtaactttgtatcactcttaactttaagcaagggttgagcaatttgattgtttttgaacggttctcctgttttgtctttgcacatctctt
gi|6 : ccctgcacatcgaatttgtcgcatattattttcttacgtggtgacattcaatttgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA--GTTTGATTCTGGTTTTA-AAAAAA--GA---TTTTCG-AA-CCAGAAATT-AATTTCATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGA-GCATGTGTG-TCTGATACCTTAACA-TATTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTCTAATC-GATGTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TG-TGTTTTCTTTCTATACAAATT-GTTTAATT
gi|7 : -TTGTACAAAAA-A-GATTTGACTTTTTTGT------TCA-T---AAT---TTCCTGGG-AAAA--T--A-------AAGTGTG------------CTAAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTTcatatttagaccaaatatctacctcgaagcgacagttttcccgtaaaaatgtactacagttaacactcacgtgacctcggttgtccac
gi|8 : GTGTGTG-TCTGTTAACTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AC-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--AT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTGC--GC---TA-TATTTTCTTTGTATACAAATT-GTTTAATT
gi|9 : tT-AT-TGATGCA-------TCA-TTTTAATC-GACTTTTTTC-TTTATC--GT-A-------TT-TCTT-AA-A-T-ATGTTAGCAC---ATCTTCC--GC---TA-TGTTTTCCTTGTATATACATT-GTTTAATTcatatctagaccaaatacctacctcgaagcggccgtcaaacgtgatacagttacactcacgtgacttcggt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCAAATGCTAACAAATACCTATATCTCGAAGCGGCAGTTGTGCTATAGTTAGCACTCACGTGACTTCGATTGCCCA
Unaligned ( gi|18 ): GCTACAGTTAGCACTCACGTGACTTCGGTTTTCCACC
Alignments
lowQualScore : 1 22222 4444444444 2 111 22222 333333333333 22222 111111111 3333333333333 22222222222 1111 11 1 11 11 111 111111 111 111 11 1 1 11 1 1 1 1 1111111 1111111 111
lowQualScore : 0 2 55555 1 7777777777 0 2 2 2 0 3 3 7 777 6 0 55555 6 222222222222 8 8 8 1 99999 8 666666666 99 0000000000000 99999999999 2222 0 88 0 11 88 77 5 8 11 8 111 1 666666 3 111 77 55 111 44 7 5 7 1 6 66 1 5 5 5 1 5 1 77 5 0 6666666 5 1 5 4 66 4 4444444 4 66 4 4 4 777 66 555 4 4
lowQualScore : . . ..... . .......... . . . . . . . . ... . . ..... . ............ . . . . ..... . ......... .. ............. ........... .... . .. . .. .. .. . . .. . ... . ...... . ... .. .. ... .. . . . . . .. . . . . . . . .. . . ....... . . . . .. . ....... . .. . . . ... .. ... . .
lowQualScore : 0 5 00000 0 0000000000 8 8 8 2 0 2 2 3 000 7 7 00000 5 222222222222 0 0 0 0 66666 0 000000000 44 2222222222222 44444444444 6666 8 66 6 00 88 66 0 0 00 0 444 4 444444 5 555 33 00 777 00 3 5 3 7 7 00 4 7 7 7 4 7 4 99 0 0 2222222 0 7 0 4 11 4 4444444 4 33 4 4 4 888 11 666 4 4
consensus : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATNGGTGTACGTTTTAACC-------TN-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGAG-AAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
Reference ( family-4688 ) : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATNGGTGTACGTTTTAACC-------TN-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGAG-AAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
gi|1 : CTGCACATCGAATATGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATAGGTGTACGTTTTAACC-------TTCTAAATGAAGATTTGAATGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTTCAAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTATTTATTTTTTTCCTACATGATGATTTGGAGGGTGGGGGA-TAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTAAGCAATTTGATTGTTTCTGAATGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAGGACA-GGTTTGATTTTTTTAT--CGTGTCA-T---AATCAATTCTTGAACAAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAAC-A--ATGAAAGTAAAATGTG-TGGCAGTT-ATCTTTTTT--GGGATTT-ATGGAAAATACT-CTTTTGAAAGGAGG-AACATAT-CA-AACCTTTGTTAAATCGATACAAAT------TCATTTACATTCAAA-T-TTTGATTCTAG-TTTTTAAAAAATTGA---TGTTTG--AACCAGAAATTG-ATTTTATATCAATAAATTCTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-TTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GTCTTTTTTT-TTCGTC--GT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGNNNNNNNNNN-NNNNNNTT
gi|10 : TTAAATCG------AT------TTA---ACATTCAA---ATTTAA----A-------AAAAAATTGA---TGTTCG--AACCAGAAATTG-ATTTTATATCAATGAATTGTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTT
gi|11 : TC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-A-T-ATGGTAGCAA---ATCTTCC--GC---TA-TGTTTTCTTTGAATACAAATT-GTTTAATT
gi|12 : TT-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGTATACAAATT-GTTTAATTcatatttagaccaaatatctacctcgaagcgacagttaactggttaatgtgctacagttagcgctcacgtgacttcggttgtccac
gi|13 : TTTTC-TTCATC--GT-ACAGTGTATC-TCTT-AC-A-T-ATGGTTGCAC---ATCTTCC--GC---TA-TGTTTTC-TTGTATACAAATT-GTTTAATTcatatttagaccaaatatctaccttgaagcgacagtttaccccgtaaaaatgtgctacagttagcactcacgtgacttcggttgtccacc
gi|14 : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACATGGTGATATTCA-----ATTTGATTTCATGGGTGTACGTTTTAACCTTAGGCTTA-TAGATGGAAATTTGAATGATAGCATGACTTTACGTTTTGTTCTGTGCGGCGACACATGcatatttagaccaaatatctactacttgaagcgacaaattaccacgtaaaataagctacagtagcactcacgtgacttcgg
gi|15 : cGATAGCATGGCCTTACGTTTTGTTCTGTGAGGCGACACATGCTTGAAAGGACTAAAGAATCTTCGTGCTTTTGTAGGATTAGGAGTGCAGGTTCTTTG-TTTTTTCCTACATGGTGATT
gi|17 : tCTTTGTATACAAATT-GTTTAATT
gi|2 : TG-----GTTTGTTTTTCAAATACACCCCATCTCCTTATACAAAGA-A-AATTTGACTTTTTGTTG-CGTGTCAATCAAAAA---TTCCTGAT-ACAAAAT--AGATAGATAAGTGTGGCAGTTATTAGGTCAAGGTCACAACAATGAAAGTAA--TGTGATGGCAGTTATTCTTTTTTTCCGGATTTCATGGAAAATACTC-TTTTGAAGGCAGATAGC--ATTCACGCTTGTGGTTACA--GAT-CAAATAACATTTCAAGTACATTCAAAATATT-GATTCTAATTTTCTAAAAAATTGAATGTTGCCGTAAACCAGAAATTG-ATTTTATATCAATAAATTCT-TCATTCGCGT---TCC--AGTCACGTA-----------AGCTAAACACGTTTTGCGCG-AAGAT-GGTTGGAGGATGAT-TTGGGCAGAGATCGTCATTTTTTATCAGACTCTTTTCGTTCATCGAGTAA-------TCGTCTTCACAA-TAATGGTACCACACAATCTTCCGAGC---TATTGTTTTTCTTGTcatatttcgaccaaatatctacttcaa
gi|3 : aTGTACAAAAA-A-GATTTGACTTTTTTGT------TCA-T---AAT---TTCCTGGG-AAAA--T--A-------AAGTGTG------------CTAAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTT-ATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-ATT-ATGGTAGCAA---AT-TTCC--GC---TA-TGTTTTCTTTGAATACAAATTGGTTTAATTtatggagaattagtgtctatgaaagcactactcattataagaccaaaatatctata
gi|4 : CACATTGAATTTGCCGCATGTT-TTTTATTACGTGGTGACATT-----------GGTTTCATTGGTGTACGTGTTAACC-------TGATGGATGGCGATTTGAACGATAACATGGCTTTACGTTT-GTTC--------------------AAAGGACTAAAGAATCTTAGTGTTTTGGTAGGAGTAGGAGTGCAGGTTCTCTGTTTTTT-CCTACATGGTGATTTGGGGGGGGGGGGGGTAGAATTTAGTGGGTATATTATTT-------------TGTATTACTCTTAACTTCTATCAAGGGTTGAGCAATCTGATTGTTTCTGAATGGTTCTCCTGAAGATTTCTGT-----------------TCAC-TTATACAAGGA-AAGGTTTGATTTTTTTTTTTCGTGTCA-T---A-T---TTCCTGAA-AAAAAATTTA-------AAGTGTGGCAGTTA----GTCAAGATAAC-A--ATGAAAGTAAAATGTG-TGGCAGTT-ATCTTTTTT--CGGATT---------------CTTTTGAAAGGAGG-AGC--AT-CACA-CCTTTGTTAAATCGATACAGAT------catatttagaccaaatatctacctcgaagcgacagtttaactggttaatgtggctacagttaagcgctcacgtgacttcggttggtc
gi|5 : CTGCACATCGAATTTGTCGCATATTATTTTCTTACGTGGTGACATTCAATTTGATTTNNNNNNNNNNNNNNNNNNNNNNNNN-------NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTCCTACATGGTGATT-GGAGGGTGGGG--GTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTAAGCAAGGGTTGAGCAATTTGATTGTTTTTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TT
gi|6 : ccTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA--GTTTGATTCTGGTTTTA-AAAAAA--GA---TTTTCG-AA-CCAGAAATT-AATTTCATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGA-GCATGTGTG-TCTGATACCTTAACA-TATTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTCTAATC-GATGTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TG-TGTTTTCTTTCTATACAAATT-GTTTAATT
gi|7 : -TTGTACAAAAA-A-GATTTGACTTTTTTGT------TCA-T---AAT---TTCCTGGG-AAAA--T--A-------AAGTGTG------------CTAAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTTcatatttagaccaaatatctacctcgaagcgacagttttcccgtaaaaatgtactacagttaacactcacgtgacctcggttgtccac
gi|8 : GTGTGTG-TCTGTTAACTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AC-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--AT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTGC--GC---TA-TATTTTCTTTGTATACAAATT-GTTTAATT
gi|9 : tT-AT-TGATGCA-------TCA-TTTTAATC-GACTTTTTTC-TTTATC--GT-A-------TT-TCTT-AA-A-T-ATGTTAGCAC---ATCTTCC--GC---TA-TGTTTTCCTTGTATATACATT-GTTTAATTcatatctagaccaaatacctacctcgaagcggccgtcaaacgtgatacagttacactcacgtgacttcggt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCAAATGCTAACAAATACCTATATCTCGAAGCGGCAGTTGTGCTATAGTTAGCACTCACGTGACTTCGATTGCCCA
Unaligned ( gi|18 ): GCTACAGTTAGCACTCACGTGACTTCGGTTTTCCACC
Alignments
lowQualScore : 1 22222 4444444444 2 111 22222 333333333333 22222 111111111 3333333333333 22222222222 1111 11 1 11 11 111 111111 111 111 11 1 1 11 1 1 1 1 1111111 1111111 111
lowQualScore : 0 2 55555 1 7777777777 0 2 2 2 0 3 3 7 777 6 0 55555 6 222222222222 8 8 8 1 99999 8 666666666 99 0000000000000 99999999999 2222 0 88 0 11 88 77 5 8 11 8 111 1 666666 3 111 77 55 111 44 7 5 7 1 6 66 1 5 5 5 1 5 1 77 5 0 6666666 5 1 5 4 66 4 4444444 4 66 4 4 4 777 66 555 4 4
lowQualScore : . . ..... . .......... . . . . . . . . ... . . ..... . ............ . . . . ..... . ......... .. ............. ........... .... . .. . .. .. .. . . .. . ... . ...... . ... .. .. ... .. . . . . . .. . . . . . . . .. . . ....... . . . . .. . ....... . .. . . . ... .. ... . .
lowQualScore : 0 5 00000 0 0000000000 8 8 8 2 0 2 2 3 000 7 7 00000 5 222222222222 0 0 0 0 66666 0 000000000 44 2222222222222 44444444444 6666 8 66 6 00 88 66 0 0 00 0 444 4 444444 5 555 33 00 777 00 3 5 3 7 7 00 4 7 7 7 4 7 4 99 0 0 2222222 0 7 0 4 11 4 4444444 4 33 4 4 4 888 11 666 4 4
consensus : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATNGGTGTACGTTTTAACC-------TN-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGAG-AAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
Reference ( family-4688 ) : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATNGGTGTACGTTTTAACC-------TN-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGAG-AAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
gi|1 : CTGCACATCGAATATGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATAGGTGTACGTTTTAACC-------TTCTAAATGAAGATTTGAATGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTTCAAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTATTTATTTTTTTCCTACATGATGATTTGGAGGGTGGGGGA-TAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTAAGCAATTTGATTGTTTCTGAATGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAGGACA-GGTTTGATTTTTTTAT--CGTGTCA-T---AATCAATTCTTGAACAAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAAC-A--ATGAAAGTAAAATGTG-TGGCAGTT-ATCTTTTTT--GGGATTT-ATGGAAAATACT-CTTTTGAAAGGAGG-AACATAT-CA-AACCTTTGTTAAATCGATACAAAT------TCATTTACATTCAAA-T-TTTGATTCTAG-TTTTTAAAAAATTGA---TGTTTG--AACCAGAAATTG-ATTTTATATCAATAAATTCTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-TTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GTCTTTTTTT-TTCGTC--GT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGNNNNNNNNNN-NNNNNNTT
gi|10 : TTAAATCG------AT------TTA---ACATTCAA---ATTTAA----A-------AAAAAATTGA---TGTTCG--AACCAGAAATTG-ATTTTATATCAATGAATTGTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTT
gi|11 : TC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-A-T-ATGGTAGCAA---ATCTTCC--GC---TA-TGTTTTCTTTGAATACAAATT-GTTTAATT
gi|12 : TT-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGTATACAAATT-GTTTAATTcatatttagaccaaatatctacctcgaagcgacagttaactggttaatgtgctacagttagcgctcacgtgacttcggttgtccac
gi|13 : TTTTC-TTCATC--GT-ACAGTGTATC-TCTT-AC-A-T-ATGGTTGCAC---ATCTTCC--GC---TA-TGTTTTC-TTGTATACAAATT-GTTTAATTcatatttagaccaaatatctaccttgaagcgacagtttaccccgtaaaaatgtgctacagttagcactcacgtgacttcggttgtccacc
gi|14 : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACATGGTGATATTCA-----ATTTGATTTCATGGGTGTACGTTTTAACCTTAGGCTTA-TAGATGGAAATTTGAATGATAGCATGACTTTACGTTTTGTTCTGTGCGGCGACACATGcatatttagaccaaatatctactacttgaagcgacaaattaccacgtaaaataagctacagtagcactcacgtgacttcgg
gi|15 : cGATAGCATGGCCTTACGTTTTGTTCTGTGAGGCGACACATGCTTGAAAGGACTAAAGAATCTTCGTGCTTTTGTAGGATTAGGAGTGCAGGTTCTTTG-TTTTTTCCTACATGGTGATT
gi|17 : tCTTTGTATACAAATT-GTTTAATT
gi|2 : TG-----GTTTGTTTTTCAAATACACCCCATCTCCTTATACAAAGA-A-AATTTGACTTTTTGTTG-CGTGTCAATCAAAAA---TTCCTGAT-ACAAAAT--AGATAGATAAGTGTGGCAGTTATTAGGTCAAGGTCACAACAATGAAAGTAA--TGTGATGGCAGTTATTCTTTTTTTCCGGATTTCATGGAAAATACTC-TTTTGAAGGCAGATAGC--ATTCACGCTTGTGGTTACA--GAT-CAAATAACATTTCAAGTACATTCAAAATATT-GATTCTAATTTTCTAAAAAATTGAATGTTGCCGTAAACCAGAAATTG-ATTTTATATCAATAAATTCT-TCATTCGCGT---TCC--AGTCACGTA-----------AGCTAAACACGTTTTGCGCG-AAGAT-GGTTGGAGGATGAT-TTGGGCAGAGATCGTCATTTTTTATCAGACTCTTTTCGTTCATCGAGTAA-------TCGTCTTCACAA-TAATGGTACCACACAATCTTCCGAGC---TATTGTTTTTCTTGTcatatttcgaccaaatatctacttcaa
gi|3 : aTGTACAAAAA-A-GATTTGACTTTTTTGT------TCA-T---AAT---TTCCTGGG-AAAA--T--A-------AAGTGTG------------CTAAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTT-ATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-ATT-ATGGTAGCAA---AT-TTCC--GC---TA-TGTTTTCTTTGAATACAAATTGGTTTAATTtatggagaattagtgtctatgaaagcactactcattataagaccaaaatatctata
gi|4 : CACATTGAATTTGCCGCATGTT-TTTTATTACGTGGTGACATT-----------GGTTTCATTGGTGTACGTGTTAACC-------TGATGGATGGCGATTTGAACGATAACATGGCTTTACGTTT-GTTC--------------------AAAGGACTAAAGAATCTTAGTGTTTTGGTAGGAGTAGGAGTGCAGGTTCTCTGTTTTTT-CCTACATGGTGATTTGGGGGGGGGGGGGGTAGAATTTAGTGGGTATATTATTT-------------TGTATTACTCTTAACTTCTATCAAGGGTTGAGCAATCTGATTGTTTCTGAATGGTTCTCCTGAAGATTTCTGT-----------------TCAC-TTATACAAGGA-AAGGTTTGATTTTTTTTTTTCGTGTCA-T---A-T---TTCCTGAA-AAAAAATTTA-------AAGTGTGGCAGTTA----GTCAAGATAAC-A--ATGAAAGTAAAATGTG-TGGCAGTT-ATCTTTTTT--CGGATT---------------CTTTTGAAAGGAGG-AGC--AT-CACA-CCTTTGTTAAATCGATACAGAT------catatttagaccaaatatctacctcgaagcgacagtttaactggttaatgtggctacagttaagcgctcacgtgacttcggttggtc
gi|5 : CTGCACATCGAATTTGTCGCATATTATTTTCTTACGTGGTGACATTCAATTTGATTTNNNNNNNNNNNNNNNNNNNNNNNNN-------NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTCCTACATGGTGATT-GGAGGGTGGGG--GTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTAAGCAAGGGTTGAGCAATTTGATTGTTTTTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TT
gi|6 : ccTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA--GTTTGATTCTGGTTTTA-AAAAAA--GA---TTTTCG-AA-CCAGAAATT-AATTTCATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGA-GCATGTGTG-TCTGATACCTTAACA-TATTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTCTAATC-GATGTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TG-TGTTTTCTTTCTATACAAATT-GTTTAATT
gi|7 : -TTGTACAAAAA-A-GATTTGACTTTTTTGT------TCA-T---AAT---TTCCTGGG-AAAA--T--A-------AAGTGTG------------CTAAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTTcatatttagaccaaatatctacctcgaagcgacagttttcccgtaaaaatgtactacagttaacactcacgtgacctcggttgtccac
gi|8 : GTGTGTG-TCTGTTAACTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AC-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--AT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTGC--GC---TA-TATTTTCTTTGTATACAAATT-GTTTAATT
gi|9 : tT-AT-TGATGCA-------TCA-TTTTAATC-GACTTTTTTC-TTTATC--GT-A-------TT-TCTT-AA-A-T-ATGTTAGCAC---ATCTTCC--GC---TA-TGTTTTCCTTGTATATACATT-GTTTAATTcatatctagaccaaatacctacctcgaagcggccgtcaaacgtgatacagttacactcacgtgacttcggt
blockSeqs : A C ATTTG G TTAGGCTTA T T C G T T T GGG G AAGAT T CAAATACACCCC C . A T TTCGT A CAAAAA T AATAGATAGAT GCAGTTATTAG AACA AT A TC TC TA C T . T CGC A AACATT A ATA AT CT ATG TA A A A T C CA T C G G A A G GA G G GAGATCG T A A G GA A CAGTGTA G CA A T A ACA GA ATA T G
blockSeqs : . C . T TGA T T A . T T . G . . C GCAC . . . G GCGT . AAT G AATTTA GCAGTTA AA T A . T AT C . . . AGC A . A TA AT TT . A A A A A . CC T . . . A . G . . G . . T . . . . . . A . . . . . . . .
blockSeqs : . . . N NN N N N . . . . . . . . . T . . AAT A TA . AA . A . T AT C . . . AGC A . A TA GT TT . A A A A T . CC . . . . . . . . . . . . A . . . . . . A . . . . . . . .
blockSeqs : . . . . . . G . . AT G TA . A . . . . . . . . . CA A . A A AT A . A . . . . . G . . . . . . . . . . . . A . . . . . . A . . . . . . . .
blockSeqs : . . . G . . . . . . . . . G . . . . . . . . . . . . A . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : C**** AAT****** G* AATTA******** *********** AA** ** ** AGC TA* AT A* CC ***
originalCons : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATNGGTGTACGTTTTAACC-------TN-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNT--CGTGTCA-T---AAT---TTCCTGAG-AAAAAAT--A-------AAGTGTGGCAGTTA----GTCAAGGTAACAA--ATGAAAGTAAAATGTG-TGGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CACGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACGCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
finalCons : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATNGGTGTACGTTTTAACC-------TN-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTTTNTC----GTCA-TAAT------TTCCTGAG-AAAAAATTA--------AAGTGTG-----------GTCAAGGTAACAA--ATGAAAGTAAAATGTG--GGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CAAGCCCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAATA-TTTGATTCTAATTTTTTAAAAAATTGA---TTTTCGA-AACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACCCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCAAATGCTAACAAATACCTATATCTCGAAGCGGCAGTTGTGCTATAGTTAGCACTCACGTGACTTCGATTGCCCA
Unaligned ( gi|18 ): GCTACAGTTAGCACTCACGTGACTTCGGTTTTCCACC
Alignments
lowQualScore : 1 22222 4444444444 2 111 22222 333333333333 5555555555555555 111 333333333333 999999999999999999999 111 22 11 11 1111 111111 111 111 11 1 1 11 1 1 1 1 1111111 1111111 111
lowQualScore : 0 2 55555 1 7777777777 0 2 2 2 0 3 3 7 777 6 0 55555 6 222222222222 8 8 8 8888888888888888 0 444 1 555555555555 111111111111111111111 0 111 0 77 66 11 88 77 5 8 11 8 1111 1 666666 3 111 77 55 111 44 7 5 7 1 6 33 1 5 5 5 1 5 1 77 5 0 6666666 5 1 5 4 66 4 4444444 4 66 4 4 4 777 66 555 4 4
lowQualScore : . . ..... . .......... . . . . . . . . ... . . ..... . ............ . . . ................ . ... . ............ ..................... . ... . .. .. .. .. .. . . .. . .... . ...... . ... .. .. ... .. . . . . . .. . . . . . . . .. . . ....... . . . . .. . ....... . .. . . . ... .. ... . .
lowQualScore : 0 5 00000 0 0000000000 8 8 8 2 0 2 2 3 000 7 7 00000 5 222222222222 0 0 0 4444444444444444 8 000 4 000000000000 000000000000000000000 8 888 8 00 88 00 88 66 0 0 00 0 8888 4 444444 5 555 33 00 777 00 3 5 3 7 7 33 4 7 7 7 4 7 4 99 0 0 2222222 0 7 0 4 11 4 4444444 4 33 4 4 4 888 11 666 4 4
consensus : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATNGGTGTACGTTTTAACC-------TN-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTT------TGTC----G-TCATAAT---TTCCTGAGAAAAAAT---T-A---AAGTGTG-------GCAGTTA-----TCAAGGTAACAA--ATGAAAGTAAAATGTGT-GGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CAAGC-CCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACNCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
Reference ( family-4688 ) : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATNGGTGTACGTTTTAACC-------TN-TAGATGGAGATTTGAACGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTT-AAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTCTTTGTTTTTTTCCTACATGGTGATTTGGAGGGTGGGGGGGTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTGAGCAATTTGATTGTTTCTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAAGA-A-GATTTGACTTTTT------TNTC----G-TCATAAT---TTCCTGAGAAAAAAT---T-A---AAGTGTG-------G-----------TCAAGGTAACAA--ATGAAAGTAAAATGTG--GGCAGTTAATCTTTTTT--CGGATTT-ATGGAAAANNCTCCTTTTGAAAGGAGA-AGC--AT-CAAGC-CCTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA-TATTTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAGAAATTGAATTTTATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGACCCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TA-TGTTTTCTTTGTATACAAATT-GTTTAATT
gi|1 : CTGCACATCGAATATGTCGCATGTT-TTTTCTTACGTGGTGACATTCA-----ATTTGATTTCATAGGTGTACGTTTTAACC-------TTCTAAATGAAGATTTGAATGATAGCATGGCTTTACGTTTTGTTCTGTGCGGCGACACATGCTTCAAAGGACTAAAGAATCTTAGTGCTTTGGTAGGAGTAGGAGTGCAGGTTATTTATTTTTTTCCTACATGATGATTTGGAGGGTGGGGGA-TAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTTAGCAAGGGTTAAGCAATTTGATTGTTTCTGAATGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TTATACAAGGACA-GGTTTGATTTTTT------TATCGT--G-TCATAATCAATTCTTGAACAAAAAA---T-A---AAGTGTGGCAGTTAG-----------TCAAGGTAAC-A--ATGAAAGTAAAATGTGT-GGCAGTT-ATCTTTTTT--GGGATTT-ATGGAAAATACT-CTTTTGAAAGGAGG-AACATAT-CAAA--CCTTTGTTAAATCGATACAAAT------TCATTTACATTCAAA-T-TTTGATTCTAG-TTTTTAAAAAATTGA---TGTTTG--AACCAGAAATTG-ATTTTATATCAATAAATTCTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-TTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GTCTTTTTTT-TTCGTC--GT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGNNNNNNNNNN-NNNNNNTT
gi|10 : TTAAATCG------AT------TTA---ACATTCAA---ATTTAA----A-------AAAAAATTGA---TGTTCG--AACCAGAAATTG-ATTTTATATCAATGAATTGTCTCTTTCA-GTCTATCCGTAGA-GCGTGTGTG-TCTGTTAGCTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTTTAATC-GACTTTTTT
gi|11 : TC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-A-T-ATGGTAGCAA---ATCTTCC--GC---TA-TGTTTTCTTTGAATACAAATT-GTTTAATT
gi|12 : TT-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GCATATA-TGTTTTCTTTGTATACAAATT-GTTTAATTcatatttagaccaaatatctacctcgaagcgacagttaactggttaatgtgctacagttagcgctcacgtgacttcggttgtccac
gi|13 : TTTTC-TTCATC--GT-ACAGTGTATC-TCTT-AC-A-T-ATGGTTGCAC---ATCTTCC--GC---TA-TGTTTTC-TTGTATACAAATT-GTTTAATTcatatttagaccaaatatctaccttgaagcgacagtttaccccgtaaaaatgtgctacagttagcactcacgtgacttcggttgtccacc
gi|14 : CTGCACATCGAATTTGTCGCATGTT-TTTTCTTACATGGTGATATTCA-----ATTTGATTTCATGGGTGTACGTTTTAACCTTAGGCTTA-TAGATGGAAATTTGAATGATAGCATGACTTTACGTTTTGTTCTGTGCGGCGACACATGcatatttagaccaaatatctactacttgaagcgacaaattaccacgtaaaataagctacagtagcactcacgtgacttcgg
gi|15 : cGATAGCATGGCCTTACGTTTTGTTCTGTGAGGCGACACATGCTTGAAAGGACTAAAGAATCTTCGTGCTTTTGTAGGATTAGGAGTGCAGGTTCTTTG-TTTTTTCCTACATGGTGATT
gi|17 : tCTTTGTATACAAATT-GTTTAATT
gi|2 : TG-----GTTTGTTTTTCAAATACACCCCATCTCCTTATACAAAGA-A-AATTTGACTTTTTGTTGCGTGTC----AATCAAAAA---TTCCTGATACAAAATAGAT-AGATAAGTGTG-------GCAGTTATTAGGTCAAGGTCACAACAATGAAAGTAA--TGTGATGGCAGTTATTCTTTTTTTCCGGATTTCATGGAAAATACTC-TTTTGAAGGCAGATAGC--ATTCACGC-TTGTGGTTACA--GAT-CAAATAACATTTCAAGTACATTCAAAATATT-GATTCTAATTTTCTAAAAAATTGAATGTTGCCGTAAACCAGAAATTG-ATTTTATATCAATAAATTCT-TCATTCGCGT---TCC--AGTCACGTA-----------AGCTAAACACGTTTTGCGCG-AAGAT-GGTTGGAGGATGAT-TTGGGCAGAGATCGTCATTTTTTATCAGACTCTTTTCGTTCATCGAGTAA-------TCGTCTTCACAA-TAATGGTACCACACAATCTTCCGAGC---TATTGTTTTTCTTGTcatatttcgaccaaatatctacttcaa
gi|3 : aTGTACAAAAA-A-GATTTGACTTTTT------TGT-------TCATAAT---TTCCTGGGAAAA------T-A---AAGTGTG-------C-----------T-AAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGC-CCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTT-ATC-GACTTTTTTC-TTCATC--GT-A-------TC-TCTT--C-ATT-ATGGTAGCAA---AT-TTCC--GC---TA-TGTTTTCTTTGAATACAAATTGGTTTAATTtatggagaattagtgtctatgaaagcactactcattataagaccaaaatatctata
gi|4 : CACATTGAATTTGCCGCATGTT-TTTTATTACGTGGTGACATT-----------GGTTTCATTGGTGTACGTGTTAACC-------TGATGGATGGCGATTTGAACGATAACATGGCTTTACGTTT-GTTC--------------------AAAGGACTAAAGAATCTTAGTGTTTTGGTAGGAGTAGGAGTGCAGGTTCTCTGTTTTTT-CCTACATGGTGATTTGGGGGGGGGGGGGGTAGAATTTAGTGGGTATATTATTT-------------TGTATTACTCTTAACTTCTATCAAGGGTTGAGCAATCTGATTGTTTCTGAATGGTTCTCCTGAAGATTTCTGT-----------------TCAC-TTATACAAGGA-AAGGTTTGATTTTTT------TTTTTCGTG-TCATA-T---TTCCTGAAAAAAAAT---TTA---AAGTGTG-------GCAGTTAG----TCAAGATAACAA---TGAAAGTAAAATGTGT-GGCAGTTA-TCTTTTTT--CGGATT---------------CTTTTGAAAGGAGG-AGC--AT-CA--CACCTTTGTTAAATCGATACAGAT------catatttagaccaaatatctacctcgaagcgacagtttaactggttaatgtggctacagttaagcgctcacgtgacttcggttggtc
gi|5 : CTGCACATCGAATTTGTCGCATATTATTTTCTTACGTGGTGACATTCAATTTGATTTNNNNNNNNNNNNNNNNNNNNNNNNN-------NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTCCTACATGGTGATT-GGAGGGTGGGG--GTAGAATTGAGTGGGTATATTATTTGAAGTGGTAACTTTGTATCACTCTTAACTTTAAGCAAGGGTTGAGCAATTTGATTGTTTTTGAACGGTTCTCCTG-----TTTTGTCTTT-----GCAC---ATCTC-TT
gi|6 : ccTTTGTTAAATCGATACAAAT------TCAATTACATTCAAA--GTTTGATTCTGGTTTTA-AAAAAA--GA---TTTTCG-AA-CCAGAAATT-AATTTCATATCAATAAATTCTCTCTTTCA-GTCCATCCGTAGAGC-ATGTGTG-TCTGATACCTTAACA-TATTT-C-CG-AAG-T-GTTTG--AGAT-AT-TGGGGCA-------TCA-TTCTAATC-GATGTTTTTC-TTCATC--GT-A-------TC-TCTT-AC-A-T-ATGGTAGCAC---ATCTTCC--GC---TG-TGTTTTCTTTCTATACAAATT-GTTTAATT
gi|7 : -TTGTACAAAAA-A-GATTTGACTTTTT------TGT-------TCATAAT---TTCCTGGGAAAA------T-A---AAGTGTG-------C-----------T-AAGGTAACAA--ATGAAAGTAAAATGTG--GACAGTTAATCTTTTTT--CAGATTT-ATGGAAAAATCTCCTTTTGAAAGGAGA-AGC--AT-CAAGC-CCTTTGTTAAATCAATACAATT------TCAATTACATTCAAA-TAATTGATTCTAATTTTTTAAAAAATTGA---TTTTCG-AAACCAG-GATTGAATTTTAT-TCAATAAATTCTCTC-TTCA-GTCCATCCGTAGACCCGTGTGTGTTCTGTTAGCTAAACA-GTTTT-C-CGAAAG-TGGTTTG--AGAT-ATGTGGGACA-------TCA-TTTTcatatttagaccaaatatctacctcgaagcgacagttttcccgtaaaaatgtactacagttaacactcacgtgacctcggttgtccac
gi|8 : GTGTGTG-TCTGTTAACTAAACA-GTTTT-C-CG-AAG-T-GTTTG--AGAT-AC-TGGGGCA-------TCA-TTTTAATC-GACTTTTTTC-TTCATC--AT-A-------TC-TCTT-AC-A-T-ATGATAGCAC---ATCTTGC--GC---TA-TATTTTCTTTGTATACAAATT-GTTTAATT
gi|9 : tT-AT-TGATGCA-------TCA-TTTTAATC-GACTTTTTTC-TTTATC--GT-A-------TT-TCTT-AA-A-T-ATGTTAGCAC---ATCTTCC--GC---TA-TGTTTTCCTTGTATATACATT-GTTTAATTcatatctagaccaaatacctacctcgaagcggccgtcaaacgtgatacagttacactcacgtgacttcggt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTCAAATGCTAACAAATACCTATATCTCGAAGCGGCAGTTGTGCTATAGTTAGCACTCACGTGACTTCGATTGCCCA
Unaligned ( gi|18 ): GCTACAGTTAGCACTCACGTGACTTCGGTTTTCCACC