lowQualScore : 111111111111111 111111111111111111111111 11111111111111111
lowQualScore : 4 1 8888 1 999999999999999 22 333333 777777777777777777 1111 1111 1 2222 777777777777777777777777 22222222222 111111 1111 333333333 111 111 2222222 22222 1 11 1 555555555555555 1 11 1 11 1111 111 11 111 11 222 1 111 11 111 1 2222 1 11 1 444444444 1 1 1 11 7777777 2 222 1 1 22 2222 1 2222 2222 33 22 11111111111111111 11 1 1 1 1 1 1 11 1 1 1 1 4444 222222 1 1 1 1 33333 1 22 1 44
lowQualScore : 0 5 5555 6 6 6 5 6 222222222222222 11 777777 4 2 2 222222222222222222 9999 7777 3 3333 0 2 1111 000000000000000000000000 9 77 3 66666666666 111111 2 2 8 2 2 0 6 4444 000000000 444 444 8 5 8 5 1 3 0000000 66666 0 33 0 2 3 2 3 1 5 888888888888888 0 6 44 5 6 8 8 44 2 22 2222 1 1 111 6 11 1 1 6 000 55 000 99 1 0 666 7 6 99 6 6 0 2 6 4 66 3 9 222 3 6 3 7 1 7 9999 0 5 22 6 6 7 555555555 5 5 5 66 1 4444444 8 6 6 2 8 2 6 6 333 6 6 1 0 11 4 3 2 7777 99 6 2 6 6 5555 6 2 7777 6 22 33 6 6 77777777777777777 00 6 6 6 7 6 7 6 7 6 6 6 5 7 6 2 0 3 99 6 0 0 7 8 0 5 2222 777777 3 1 3 5 3 8 33333 3 00 3 5 6 6 66 6
lowQualScore : . . .... . . . . . ............... .. ...... . . . .................. .... .... . .... . . .... ........................ . .. . ........... ...... . . . . . . . .... ......... ... ... . . . . . . ....... ..... . .. . . . . . . . ............... . . .. . . . . .. . .. .... . . ... . .. . . . ... .. ... .. . . ... . . .. . . . . . . .. . . ... . . . . . . .... . . .. . . . ......... . . . .. . ....... . . . . . . . . ... . . . . .. . . . .... .. . . . . .... . . .... . .. .. . . ................. .. . . . . . . . . . . . . . . . . . .. . . . . . . . .... ...... . . . . . . ..... . .. . . . . .. .
lowQualScore : 0 0 0000 0 0 0 0 0 000000000000000 00 000000 0 5 5 000000000000000000 0000 7777 2 2222 0 5 2222 333333333333333333333333 0 88 2 22222222222 888888 5 2 8 5 2 2 5 8888 000000000 000 000 0 6 0 6 4 8 7777777 88888 0 88 2 5 2 2 5 2 5 222222222222222 0 5 22 0 0 2 0 44 2 44 2222 8 7 777 7 22 7 0 7 888 88 888 22 3 3 222 2 3 22 0 0 2 5 0 2 00 2 0 444 2 5 3 3 0 3 3333 7 0 00 0 0 0 000000000 0 0 0 00 0 0000000 3 0 0 5 5 5 0 0 000 0 0 5 5 00 0 0 5 0000 00 0 5 0 0 5555 0 5 0000 0 00 00 0 0 55555555555555555 00 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 3 33 0 0 0 0 3 7 0 5555 777777 3 0 3 0 3 3 33333 3 33 7 0 0 0 00 0
consensus : NNACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCNTCTCAGGACAACCACTNGCCCANCTANANNGTCCATAAGA--T-A-GAAGATTGACATAGAGAAAGCTCAGCAAGATGATCCTGAATTAT-CGCC-CTGGATA----CAGTGCANATATGAT-GATACAAG-------CCGAAGAAAAGCAANTTATCT----GG-----ATCTTATGCAGACACCATCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAG--TAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACC-TTCN--AGTTTAGTAANTCATGT-AT--TGAGATNCTTACACAACGACACGGGNCACCCCGGAAGAGA--G--AA--CTATTAGGT-TTANTNNGAGATAGATTCTTTTGGCCTG-GANNGCGCAAAGACGTAGAAAATTGGATTAGAGAATGTAAGAGATGTATTCTTAGG---AAG-ACACCANCACAAGA-CA--AAGCANAACTT---AACA--ACATCATCA-CCTCACAACCNCTTG-AATTGGTCTGCATGGATTTCCTGTNTTTAGAGAGAAGTAAAGGA-GGATATGAAAACGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CGTTTTGTCGTACCCTACAGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAA----A-AGACATAGAATTTGGATAAGATAGGCCGAACGGAANACAAAGATCCCTTACCAANTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACANCTATGATCTCAAGTCCAGAGGAGTTGTACTGGNAGANGGAGATGGAGTGCTNGTCAAAGTAGTAGCCTTNGATGGACGTCACAAGTTAGCGGACAAGTGGGAAGAGGACCCGTATATTGTNATTAGCCAGCCAAATCAAGACATTCCTGTTTGCAAAGTACAGAGGGAAGATGGTGTTGGAAGAGTGGGGATTCTGCACAGAAACTTACTTTTACCGATTGGACATGTTGCAG--AATTCCAACCAANGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGCAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAANACGACATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACTGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCAG-----AAACTGAA-CCAGCAGCTG-ACGCTGAATCAGAGACAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAA
Reference ( gi|1 ) : GAACCAAG-CACTGCGGAGATG-G--TCACTATTTCGTCATACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGCCCATTTCCATCTCGGAACAACCATTTGCTCAGTTACAACATCCACAAGAAATAATGAAGATTGACACAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CGAC-CTGGATA----CAGTGCA-------------CAAG-------CCAAAGAAGAGCAAGTTATCT----GG-----ATCTTTTGTAGACATCATTATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA---TAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACC-TTCC--AGTTTAGTAGATCATGT-AT--TAAGATCCTTACACAACAATATGGGACATCCTGGAATAGA--G--AA--CTATTAGGT-TTACTTCGAGATATATTTTTCTGGTCTG-GACAGTACAAAGATGTTGAGAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-CA--AAGCATAACTT---AACA--ACATAATCA-CTTCACAACCCCTTA-AATTGATCTGCATGGACTTCCTGTGTCTAGAGAGAAGTAAGGGA-AGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAACCTTCTTCAAT---CATTTTGTCGTACACTACGAATTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAATTCATACATAGCTCCCATTGTAAACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCCCCATATCATATTATGTTTGGACGGGAACATAACTTACCAATAGTATAGACATAGAATTTGGATTAGATAGACCAAACGAAAGATTAAGATCTCTTACCAAGTACATAAAAATCCTAAAGGAGTGATTGAGGAAATCCTACCAGTTAGCATCAGAAGCTACACGTAAAGCACAGGAAAGACAAAAAGACAACTATGATCTCAAGTCCAGAGAAGTTGTACTGGAAGAGGGATACCGAGTGCTAATTAAAGTAGTAGCCTTCGATGGACGTCACAAGTTAGCGGAAAAATGGGAATGAAACCCGTACATTGTGATGAAACAGCCAAATCAAAACATTCAAGTTTACAATATACAGAGGGAAGATGGTGTTGGAAGAGTGAGGATTCTGTACAGAAACCTACTTTTACCAATTGGACATGTTGAAGGAAATTTCAACCAAAAATGAATTCCAAACCAGTTCCACCAATGCGGTCAAAACCTAAACCTAGAATGAGACTAAGGATAAGGGAAGACAGTGACATTCGGTCAACTGTAGAAAGCCTAATAGACTCGGATGAGGAGGAAGCAATCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-ATGTTGCCTGAAACCG-GAATCGAGGA-TGCAGATTTTCCATCAGTTGAGGACGCTCATCATGTTGGATAACATCTAGAAGATGATGCAG----AAGAGGAGAAT-G--CGATCA-TGGAACCTGTGCC-ACAAGCATATGA-TCCTG-----AAACTGAA-CCAGCAGCTT-ACGCTGAATCAGAGACCGACGATACGAGTTCACCTGTTACTGCTCCACGCTAGGGCTAGAAGAGAGCCAGAA
gi|3 : ACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCCTCTCAGAACAACCACTTGCTTACTTACATGGTCCATATGGAATAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATATTGAATTAT-TGCC-CTG-ATA----CAGTGCAAATATAATGGATACAAG-------CCGAAGAAAAGCAATCTATCT----GG-----ATCTTTTGCATACACCATATTGTTCAGGAACTGCGACAAACTGAAGCTGATG--A-ACAACATTATACTAGTATAG---AGAGAAGT---GAA-AGTGGATGATCA-GATCTTGAATCAACTTGTTGCACC-TTCT--GGTTTAGTAAGTCATAT-AT--TGAGATCCTTAAATAACAACATGGGACATCCTGGAAGAGA--GGAAA--C-ATTAGGT-TTACTTCGAGATAGATTCTTCTAGCCTG-AACAGTGCAAGGACGTAGAAAATTGGATTTGAGAATGTAGGAGATGTA
gi|5 : atgaatggcgagtcaattggatatgatacgccagcaggaggaagctatacgaccaggctgaagaacaattcatccatgccccagataaggacgctttagcgaagattgttttaggcagtttgaaataggtacatcacatgaggaaatttcgggcaagagcagactactatgttataggatcaacacctgataattgccatcaccaagacaaaccaatccatagggcctacatcgactattcatgccaaattgagccatgcaacagactttaaccagccgaccgcaatcaagagtggattgccaaggccattattcttatcactatgatctacttgattataaagatacaaaccatgggcaggggaagaaacaacgaatgattcagccacgcaagcgacagatgcacggtatcctagacttgattggagagTTTCCA-----GGACAACCATTAGCCCAGCTAGAGT-----TAAGA------GAACTTTG-----GAGAA--TTCAGAGAGATGACCC--ACTTATTCGACTCTGGATAAACGCAGTGAAGG-----------CAAGAACACTTCCAGTGAAACACAAAAT-TCCAAAAGGCAAAAATC--------ACATGATCATGTGTAGGAATTTCAACAATTTGAAATCAATT--AGAGGGTATT-----A---TAC---AGAGAAGT---TAAGAGTCCA-GACAA-CATTATCAATCAACTCGTATTGCCAAAGC--AACTTA-TACCTACTGC-TT--TAACAGGATTACACAACAATATGGGCCACCCAGGAAAAGA----------TTTT--CT-TTGTTAAGAGATAGATTCTTTTGGACAG-GAATGAATTTAGACGTAGAAAATTGGGTCAAAAATTGCGACAGATA----CTTGCG---AAGAAAATCGTCATGTCA-GA--AGGCACCAATTGTGAATATTACATACTCA-T------ATCCCTTAGAACTAGTTTGCATAGATTATTTAACTTTAGAGCCTTGCAAAGGAGGGAT-TGCCAACATTTTAGTTTTGACAGATCATTATACAAGAT--ATGCTCAGGCTATTCCGAC-AAAAGTTC-ACCGCTAAGACAGATAAC---AATCCCCT--AACATACGTTTTGTCga
gi|23 : CCACAAGA--TCA--GAGATTGATATACGAAAAGCTCAACAAGATGATCCTGAACTAT-TTCC-ATGGATA----CAGTa
gi|18 : GCAAGATGATCCTGAATTAT-CGCC-CTGGATA----AAGTGCATATATGATTAATACAAG-------CCAAAGAATAGCAATTTATCT----GG-----ATCTTATGCAGACACCATCAT
gi|6 : CAAGTTATCT----GG-----ATCTTATGCAGACACCATCATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA---TAC---AGAGAAGT---AAA-AGTGGATGACCA-GATCATCAATCAACTTGCTGTACC-TTCA--AGTTTAGTAATTCATGT-AT--TGAGATCCTTACACAACAACACAGAACATCCTGGAAGAGA--G--AAAAC-ATTAGGT-TTAATCTGAGATAGATTCTTTTGGCCTG-GACAGCACAAAGATGTAGAAAATTGGATTAGAGAAGGTAGGAGATGTATTCTTAGG---AAA-ACACCAGCATAAGA-CA--AAGTAGAACTT---AACA--ACATCATCA-CCTCACAACCTCTTC-AATTGGTTTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAAGGA-GGATATGAAAATGTTCTCGTTATAACCGATTACTTTACACGGTAAATGCTATCGCCATACCAACTAGAAACACGAC
gi|9 : TCAG-AACTTCAAGAAACTCAGGAT--TGGCA-ACGACATT---CTAG--TACGTGAGACAAGTAAAGAA-GATGGAGAATTACGA-CACCAGT----TTATAGT-TC-TTAGGGAGTTTC----ACCATGTTATCTTACAATACCTCCATA-TGACATGGGTCACCCCGGACGAGATAA--AA--CTGT--GGCACTAGTAAGAGAGAGATTCTATTGGCCTAAGAT-GCACTCGGATATTTCTAACTGGATTGACCAATGTGAGAGGTGCATC---AAGTTCAAG-ACGCC--CACAAAC-CAGAAAGCAAAGCTC---GTCA--ACATTACTA-CTTC-CAACCATTAG-AAATGGTCTGCATGGATT
gi|25 : ctcca---TAC---AGAGAAGT---GAA-AGTGAATGATCA-GAGCATCAATCAACATGTTGTACC-TTCa
gi|15 : TTCTTCTGGCCTG-GGATGTCCAAAGATGTAGACCAATGGATTACAGGATGTAAGAGCTGTATTCTGAGG---AAG-TCTCCTAC-CAATATTA--GGGCAC--CTTTG-GTCA--ATATCAACA-CATCCGAAGCAC-TA-GATTAGTTTGCCTTGATTTCCTTTCTTTAGA
gi|2 : gatcgtTATTCTTAGG---AAA-ACACCAGCATAAGA-CA----GCAGAACTT---AACA--ACATCACCA--TTCACAACCTCTTG-AATTGGGCCGCATGAATTTCCTGTGTTTAGAGAGAAGTACTGGA-GGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAGC---CATTTTGTTGTACCCTACa
gi|20 : TCTTAGG---AAA-TCACCATCGCAAGA-CA--AAGCAAAACTT---AACA--ACATCATCACCCCCACAGCCTCTTG-AATTGGTCTGCATGGAagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|21 : TAGAGAGAAGTAAGGGT-GGATATGAAAATGTTCTCGTTATTACCGATCATTTTACACGTT--TTGCTATCGCCATACCAA
gi|17 : ATAACCGATCACTTTACACGGT--TTGCTATTGCTATACCAACTAGAAACACAACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTTGTACCCTACAGACTTCCCAAACGT
gi|2 : GGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGTCAATAG-----ACATATAATTTGGATAAGATAGGCTGAACGAAAGAC-AAGATCTCTTACCAAGTATATAGACAACTTAAAGAAGCGAATGAGGAAATCCTACCAGTTATCATCAGAAGTTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATCTCAAGTCCAGAGGAGTTGTACTGGCAGATGGAGATGGAGTGCTCGTCAAAGTAGTAGCCTTCGATGGACGTCACAAGTTAGCGGACAAGTGGGAAGAAGACCCATATATTGTCATTAGCCAGCCAAATCAAGATATTCCTGTTTGCAAAGTACAGAGGGAAGATGGTGTTGGAAAAGTGAGGATTCTGCACAGAAACTTACTTTTAattcattctgatcaaggg
gi|4 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaATTGGAAATCATACAT---------TGTACACGCATACAATTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTAGACGGGAACCTAACTTACCAA----A-AGACATAGAATTTGGATTAGATAGGCCGAACAGAACATAAAGATCCCTTACCAATTATATAGACAACTTAAAGGAGCGACTGAGGAAATCCTACCAGTTAACATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACATCTATGATCTCAAGTCCAGAGAAGTTGTACTGGAAGAGGGAGATAGAGTGCTAGTCAAAGTAGTAGCCTTAGATGGACGTCACAAGTTAGCGGATAAGTGGGAAGAGGATCCGTATATTGTGATTAGCCAGCCAAATCAAGACATTCCTGTTTACAAAGTACAGAGGGAAGATGGTGTTGAAAGAGTGGGGATTCTGCACAGAAACTTACTTTTACCGATTGGACATGTTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAAAACGATATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAGTCGGGGA-TGCAGATTTCCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACTGG--CGATCA-TGGAACCTGTGCC-ACAAGCAGATGA-TCCAG-----AAACTGTA-CCAGCAGCTG-AGGCTGAATCAGAGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|24 : ATCTTATGTTTGGACGGGAACCCAACTTGCCA-----ATAGACATAGAATTTGGATAAGACAGGCag
gi|10 : GCACAGAAACTTACTTTTACCAATTGGA-----------------CAACCAATGATGGATCCCAAACCAGTTCCACCA
gi|2 : GTCAACTGCAGAAACCCTATTAGACTCGGATGAGAAGGAAGCAGTCTTCATTGAGATTCCTAGAGGAACACGACATCATCACTCTCATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAAGA-TGCAGATTTTCCAACTGTTAAGGATGCTCATCATGTTGGAGAACATTTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACTTGCGCC-ACAAACAGATGA-TCCTG-----AAACTGAA-CAAGCAGCTG-ACGCTGAATCAGAGATAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggaatcgaagatgcagattttccaactgttgaggatgctcatcatgttggagaacatctagaagatg
gi|8 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacGATGTCCCTTAGTATTTGTGTTGCCTGAAACTGCGAATCAAGGATTGCAGATTTTCCA
gi|10 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcG-GAATCGAAGA-TGCAGATTTTCCAACTGTTGAGGATGCTCATCATGTTGGAGAACATCTAGAAGATGaagttttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttagagactgaccgatcactggaacctgcgccaacaagcagaagattccagacactaaactgaacccagcagcttgatgctgaa
gi|8 : gcacagaaacttacttttaccaattggacaaccaatgatggatcccaaaccagttccaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntGAGACT-GACCGATCACTGGAACCTGCGCCAACAAGCAGAAGATTCCAGACACTAAACTGAACCCAGCAGCTTGATGCTGAA
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ACAACAAGAGGCTTTCGATACTCTTCGATAACATTTGATATCACCACCTATACTTGGATACCCGAACATGACGATTCCATACCGATGTTAGTACCAGAGGACTTGGAGCCATTCTTTACCAAGACCAGGATGGGATGAAGCGAGTCATTGGAAACACTAGCAGAGGACTTACACCAGCTGAAAGAAATTATCCTGCCCATAAGCTAGAGTTTGTAGCTTTGAAATGGTCCATCACTGAGAAAGTCAAAGATTACTTATATGGATAAAAGTTTACTGCCATTAGAGACAACAACCCGTTGACCTACATTCTATCCAATGCAAAATTAGACTCAACAGGCCATAGATGGGTTGCAGCATTATCTGCCTATGATTTCGACATCAAATACAGACCAGGCAAGAACAATGCAGCAGCAGATGCACTATCTAGATT
Unaligned ( gi|11 ): AGTGCTTGCTCCAACGTAGTAGCCTGATTTGTGTATCGAGGACCGTCATCACGAGTCTTGCAGACTAAGTGAGGAACATAGTTTATGAGTGATCCATCGATTGTTTTAATCCATGGACCATTTCCTGTTTACAAATGTACAAAGGAAGAAGAATTAGGTTAGTGTTTATTAATAACGAAAATGTGTAGCAGATATCTTGCACCACACAACCATTCTTCTACGTTGTATAAATTTTACCGATATGGACATGTTTGCAGTAT
Unaligned ( gi|12 ): CCTTTACCAGGAACAAAGTGGTACAAAAAGAGTCATACGCGTATTGTCAGTAGAGGTCTTTGACCAGTGAAAAGCAACCTATCCTGCGCACAAACTTGAATTCTTGGCACTCAAGTGGGCTGTGTGGACAAATCTACTATGTATCTCTACGCGAAATCAGTTTCACGTCTGTAACAAGATAATAATCCTTTGACGTATGTCATATCCAAGCCAAGTTGGATGCTACAAGCCAGCAGATGGGTGGCGGCATTA
Unaligned ( gi|13 ): GACAGAAGACCAACTATGACCATGAAGGCTATCAGAGCATTGCCTTTACTTGCAGTGTTTGGTGAATAGGGGTTTGGTTATAAGTCGTCGCTTAATGATGAAAACATAAGATCGCTGACAAGTGGGAAGACATCCTAACTTGTAAGTCAACAACCAAATAAGAACATACAGTTTCACAAGTTCGGAGAGAGGATGGTAGGGAGCGACTGATAGGTATTGCATCGTAATTATTACTGTCCGATCGG
Unaligned ( gi|14 ): TAGCGCTGAAATGGACTATCACCGAGAAATTCTCAGATAATCTTCAAGGGGAAAATCACAGTTTACACCGACAACAATCCTCTGACCTATGTGTTGAGCACTGCTAAATTGGATTCAACAGGACATCGTTGGATTTCCCATTTAGCGAATTATAACTCCAAGGTCATTTACAGATCTGGGAAGCTCAACATAGATGCAGACGGATTATCTAG
Unaligned ( gi|16 ): GAATCCACCTGTAGTACTATCAAGCTTTGCTAGATTTGTATTGAGATTAGTGTACAGCAATTTAGGATGTCCAGGAAGAGAGAGCACATTGGGCTTTATAAAAGGTCGTTGGCCAGCACAATACAGGGATGTGGAAAATTAGATT
Unaligned ( gi|19 ): CCCATAAGCTAGAGTTTTTAGCTTTGAAATGTTCCATCACTGAGAAATTCAAGGATCAAAGTTTACTGTCATTACAGACAACAACCCGTTAACCTACA
Unaligned ( gi|22 ): GGGTTGATGAGTGTGAGAGATGCATGAAGTTCAAGACTTCTAATCACCAGAAAGTATGATCGGTTGATATTACCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 2 8888888888 11 555555555 1111 4444444444 22222 11 1111111 222 111 111 11111 3333333333 11 111 111 1111 1 111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333 1 111 2222 1111 1111 11 33333333333333 1111 33333333333333 11 11 22222 11 1 111 1 1 1 1 1 4444 1 11 1 1 1 22222 1 1 2
lowQualScore : 5 2 3333 2 0 7777777777 3 1 0 0 1 0 11 1 99 2 222222222 33 0 3 3 0 8 8 7777 5555555555 0 3 2 1 1 0 0 1 00000 3 11 8 8888888 000 111 6 3 6 3 2 0 000 6 2 1 99 6 99 66666 1 1 3 3 1 0 6 1111111111 5 6 1 22 1 22 22 000 1 0 0 2 0 000 5 66 0 5 888 22 77 2 6 1111 1 1 2 1 2 8 0 2 99 0 3 0 3 0 777 2 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 999 0 0 555555 4 0 1 0 7 0 1 1 1 1 0 777 4 2 1111 1 8888 5555 1 11 8 88888888888888 0 7777 0 8 1 8 8 88888888888888 6 4 11 11 0 5 8 0 8 1 9 8 8 11 3 55555 3 11 8 3 0 2 777 3 1 4 4 4 0 1 0 0 0 0 0 0 4 4444 0 33 0 0 0 4 55555 0 0 0 0
lowQualScore : . . .... . . .......... . . . . . . .. . .. . ......... .. . . . . . . .... .......... . . . . . . . . ..... . .. . ....... ... ... . . . . . . ... . . . .. . .. ..... . . . . . . . .......... . . . .. . .. .. ... . . . . . ... . .. . . ... .. .. . . .... . . . . . . . . .. . . . . . ... . ...................................................................................................................................................... ... . . ...... . . . . . . . . . . . ... . . .... . .... .... . .. . .............. . .... . . . . . .............. . . .. .. . . . . . . . . . .. . ..... . .. . . . . ... . . . . . . . . . . . . . . .... . .. . . . . ..... . . . .
lowQualScore : 0 5 0000 5 0 5555555555 0 0 7 7 0 7 77 0 77 5 222222222 55 8 2 0 8 0 0 0000 8888888888 8 2 0 2 0 8 8 4 00000 2 00 0 8888888 888 777 7 2 7 2 1 1 222 7 5 0 22 7 22 77777 0 7 3 3 0 7 3 7777777777 7 7 0 00 7 00 66 000 4 6 3 2 1 000 7 99 1 7 000 44 99 1 0 3333 4 0 1 0 2 0 8 8 22 8 2 0 2 2 555 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 7 7 222222 0 7 0 7 3 7 0 0 0 0 0 555 2 5 2222 0 5555 0000 0 00 0 00000000000000 8 0000 8 0 0 0 0 44444444444444 4 0 88 44 8 0 0 8 0 4 6 0 0 00 2 00000 2 00 0 2 0 5 222 7 0 0 0 0 7 0 7 0 0 0 0 0 0 3333 0 88 0 0 0 0 00000 0 0 2 0
consensus : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--GTCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTA-TCG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG-----AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAA---GGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-CA--AAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAA----N-AGACATAGAATTTGGATNAGATAGGCCGAACGAAAGATAAAGATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT----------TC--GATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAGNCAGCCAAATCAAGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCC-AACNGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
Reference ( family-4644 ) : NNACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCNTCTCAGGACAACCACTNGCCCANCTANANNGTCCATAAG--A--TA--GAAGATTGACATAGAGAAAGCTCAGCAAGATGATCCTGAATTA-TCG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCGAAGAAAAGCAANTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG-----AGATNCTTACACAACGACACGGGNCACCCCGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTTTGGCCTGGANNGCGCAA---AGACGTAGAAAATTGGATTAGAGAATGTAAGAGATGTATTCTTAGG---AAG-ACACCANCACAAGA-CA--AAGCANAACTT--AACAACATCATCA-C-CTCACAACCNCTTGAATTGGTCTGCATGGATTTCCTGTNTTTAGAGAGAAGTAAAGGA-GGATATGAAAACGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CGTTTTGTCGTACCCTACAGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAA----A-AGACATAGAATTTGGATAAGATAGGCCGAACGGAANACAAAGATCCCTTACCAANTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACANCTATGATC-TCAAGTC---CAGAGGAGTTG----TACTGGNAGAN---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT----------TN--GATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GACCCGTATATTGTNATTAGCCAGCCAAATCAAGAC-ATT-CCTGTTTGCA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAANGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGCAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAANACGACATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCC-AACTGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCAG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAA
gi|1 : ACCAAG-CACTGCGGAGATG-G--TCACTATTTCGTCATACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGCCCATTTCCATCTCGGAACAACCATTTGCTCAGTTACAACATCCACAAG--AAATAATGAAGATTGACACAGAGAAAGCGCAGCAAGATGATCCTGAATTA-TCG-ACCTGGATA----CAGTGCA-------------CAAGCCAAAGAAGAGCAAGTTATCTGGATCTTTTGTAG-----ACATCATTATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACCTTCC--AG-TTTAGTAGATCATG--T-AT--TA-----AGATCCTTACACAACAATATGGGACATCCTGGAATAGA--G--AAC-TATTAGGT-TTACTTCGAGATATATTTTTCTGGTCTGGACAGTACAA---AGATGTTGAGAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-CA--AAGCATAACTT--AACAACATAATCA-C-TTCACAACCCCTTAAATTGATCTGCATGGACTTCCTGTGTCTAGAGAGAAGTAAGGGA-AGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAACCTTCTTCAAT---CATTTTGTCGTACACTACGAATTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAATTCATACATAGCTCCCATTGTAAACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCCCCATATCATATTATGTTTGGACGGGAACATAACTTACCAATAGTATAGACATAGAATTTGGATTAGATAGACCAAACGAAAGATTAAGATCTCTTACCAAGTACATAAAAATCCTAAAGGAGTGATTGAGGAAATCCTACCAGTTAGCATCAGAAGCTACACGTAAAGCACAGGAAAGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGATA-C-CGAGTGCTAAT--TA-AAGTAGTAGCCT----------TC--GATGGAC----GTCACAAGT-TAGCGGAA-AAATG-GGAA----------TGA-AACCCGTACATTGTGATGAAACAGCCAAATCAAAAC-ATT-CAAGTTTACA-AT-ATACAGAGG--GAAGATGGTGTTGGAAGAG-----TGAGGATTCTGTACAGAAAC--CTACTTTTACCAAT-TGGACATG-TTGAAGGAAATTTCAACCAAAAATGAATTCCAAACCAGTTCCACCAATGCGGTCAAAACCTAAACCTAGAATGAGACTAAGGATAAGGGAAGACAGTGACATTCGGTCAACTGTAGAAAGCCTAATAGACTCGGATGAGGAGGAAGCAATCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-ATGTTGCCTGAAACCG-GAATCGAGGA-TGCAGATTTTCC-ATCAGTTGAGGACGCTCATCATGTTGGATAACATCTAGAAGATGATGCAG----AAGAGGAGAAT-G--CGATCA-TGGAACCTGTGCC-ACAAGCATATGA-TCCTG-----AAACTGAA-CCAGCAGC-TTACGCTGAATCAGAGACCGACGATACGAGTTCACCTGTTACTGCTCCACGCTAGGGCTAGAAGAGAGCCAGAA
gi|10 : gaGCACAGAAAC--TTACTTTTACCAAT-TGGACA------------------ACCAATGATGGATCCCAAACCAGTTCCACCA
gi|11 : AGTGCTTGCTCCA-ACGTAGTAGCCTGATTTGTGTATC--GA-GGACCGTCATCACGAGTCTTGCAGACTAAGTGAGGAACATAGTTTATGAGTGATCCATCGATTGTT-TTA---ATCCA--T--GGACCATTTCCTGTTTACA-AATGTACAAAGGAAGAAGAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggaatcgaagatgcagattttccaactgttgaggatgctcatcatgttggagaacatctagaagatg
gi|11 : TTTTACCGATATGGACATGTTTGCAG--TATattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaattttaccgatatggacatgtttgcagtat
gi|13 : agtgcttgctccaacgtagtagcctgatttgtgtatcgaggaccgtcatcacgagtcttgcagactaagtgaggaacatagtttatgagtgatccatcgattgttttaatccatggaccatttcctgtttacaaatgtacaaaggaagaagaattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaaGACAGAAGACCAACTATGACCATGAAGGCTATCAGAGCA-TTGCCTTTACTTGCAGTGTTTGGTGAATAGGGGT-TTGGT--TATAAGTCGTCGC-T----------TAATGATGAAA----A-CATAAGA-TCGCTGAC-AAGTG-GGAA----------GA--CATCC-TAACTTGTAAGTCAACAACCAAATAAGAAC-A-T-ACAGTTT-CACAA-GTTCGGAGA--GAGGATGGTA--GGGAGCGACTGATAGGTAT--TGCATCGTAATTATTACTGT--CCGAT-CGG
gi|15 : GATCGTTTCTTCTGGCCTGGGATGTCCAA---AGATGTAGACCAATGGATTACAGGATGTAAGAGCTGTATTCTGAGG---AAG-TCTCCTAC-CAATATTA--GGGCAC--CTTTGGTCAATATCAACA-C-ATCCGAAGCACTAG-ATTAGTTTGCCTTGATTTCCTTTCTTTAGA
gi|16 : AATCCACCTGTAGTACTATCA--AGCTTTGCTAGATT-TG--T-AT--TG-----AGATTAGTGTACAGCAATTTAGGATGTCCAGGAAGAGA--G--AGCACATTGGGC-TTTATAAAAGGTCG------TTGGCCAGCACAATACAG---GGATGTGGAAAATTAGATTa
gi|17 : gATAACCGATCACTTTACACGGT--TTGCTATTGCTATACCAACTAGAAACACAACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTTGTACCCTACAGACTTCCCAAACGT
gi|18 : GCAAGATGATCCTGAATTA-TCG-CCCTGGATA----AAGTGCATATATGATTAATACAAGCCAAAGAATAGCAATTTATCTGGATCTTATGCAG-----ACACCATCATattcattctgatcaaggg
gi|2 : TATTCTTAGG---AAA-ACACCAGCATAAGA-CA----GCAGAACTT--AACAACATCACCA-T--TCACAACCTCTTGAATTGGGCCGCATGAATTTCCTGTGTTTAGAGAGAAGTACTGGA-GGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAGC---CATTTTGTTGTACCCTACAGACT
gi|2 : GGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGTCAA----T-AGACATATAATTTGGATAAGATAGGCTGAACGAAAGACAA-GATCTCTTACCAAGTATATAGACAACTTAAAGAAGCGAATGAGGAAATCCTACCAGTTATCATCAGAAGTTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGGAGTTG----TACTGGCAGAT---GGAGA-T-GGAGTGCTCGT--CA-AAGTAGTAGCCT----------TC--GATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAA-GACCCATATATTGTCATTAGCCAGCCAAATCAAGAT-ATT-CCTGTTTGCA-AA-GTACAGAGG--GAAGATGGTGTTGGAAAAG-----TGAGGATTCTGCACAGAAAC--TTACTTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|2 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaGTCAACTGCAGAAACCCTATTAGACTCGGATGAGAAGGAAGCAGTCTTCATTGAGATTCCTAGAGGAACACGACATCATCACTCTCATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAAGA-TGCAGATTTTCC-AACTGTTAAGGATGCTCATCATGTTGGAGAACATTTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACTTGCGCC-ACAAACAGATGA-TCCTG-----AAACTGAA-CAAGCAGC-TGACGCTGAATCAGAGATAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|20 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacTCTTAGG---AAA-TCACCATCGCAAGA-CA--AAGCAAAACTT--AACAACATCATCACC-CCCACAGCCTCTTGAATTGGTCTGCATGGA
gi|21 : TAGAGAGAAGTAAGGGT-GGATATGAAAATGTTCTCGTTATTACCGATCATTTTACACGTT--TTGCTATCGCCATACCAA
gi|23 : CCACAAG--A--TC--AGAGATTGATATACGAAAAGCTCAACAAGATGATCCTGAACTA-TTT-CCATGGATA----CAGT
gi|24 : ATCTTATGTTTGGACGGGAACCCAACTTGCCAA----T-AGACATAGAATTTGGATAAGACAGGC
gi|25 : TAC---AGAGAAGT---GAA-AGTGAATGATCA-GAGCATCAATCAACATGTTGTACCTTC
gi|3 : ACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCCTCTCAGAACAACCACTTGCTTACTTACATGGTCCATATGGAA--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATATTGAATTA-TTG-CCCT-GATA----CAGTGCAAATATAATGGATACAAGCCGAAGAAAAGCAATCTATCTGGATCTTTTGCAT-----ACACCATATTGTTCAGGAACTGCGACAAACTGAAGCTGATG--A-ACAACATTATACTAGTATAG-AGAGAAGT---GAA-AGTGGATGATCA-GATCTTGAATCAACTTGTTGCACCTTCT--GG-TTTAGTAAGTCATA--T-AT--TG-----AGATCCTTAAATAACAACATGGGACATCCTGGAAGAGA--GGAAAC--ATTAGGT-TTACTTCGAGATAGATTCTTCTAGCCTGAACAGTGCAA---GGACGTAGAAAATTGGATTTGAGAATGTAGGAGATGTA
gi|4 : atgaatggcgagtcaattggatatgatacgccagcaggaggaagctatacgaccaggctgaagaacaattcatccatgccccagataaggacgctttagcgaagattgttttaggcagtttgaaataggtacatcacatgaggaaatttcgggcaagagcagactactatgttataggatcaacacctgataattgccatcaccaagacaaaccaatccatagggcctacatcgactattcatgccaaattgagccatgcaacagactttaaccagccgaccgcaatcaagagtggattgccaaggccattattcttatcactatgatctacttgattataaagatacaaaccatgggcaggggaagaaacaacgaatgattcagccacgcaagcgacagatgcacggtatcctagacttgattggagagATTGGAAATCATACAT---------TGTACACGCATACAATTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTAGACGGGAACCTAACTTACCAA----A-AGACATAGAATTTGGATTAGATAGGCCGAACAGAACATAAAGATCCCTTACCAATTATATAGACAACTTAAAGGAGCGACTGAGGAAATCCTACCAGTTAACATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACATCTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGAGA-T-AGAGTGCTAGT--CA-AAGTAGTAGCCT----------TA--GATGGAC----GTCACAAGT-TAGCGGAT-AAGTG-GGAA----------GAG-GATCCGTATATTGTGATTAGCCAGCCAAATCAAGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGAAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAAAACGATATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAGTCGGGGA-TGCAGATTTCCC-AACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACTGG--CGATCA-TGGAACCTGTGCC-ACAAGCAGATGA-TCCAG-----AAACTGTA-CCAGCAGC-TGAGGCTGAATCAGAGACAGga
gi|5 : CAGGACAACCATTAGCCCAGCTAGA--GT---TAAG------A--GAACTTTG-----GAGAA--TTCAGAGAGATGACCC--ACTTATTCGACTCTGGATAAACGCAGTGAAGGCAAGA---ACAC-TTCCAGTGAAACACAAAAT-TCCAAA----AGGCAAAAATCACATGATCATGTGTAGGAATTTCAACAATTTGAAATCAATT--AGAGGGTATT------ATAC---AGAGAAGT---TAAGAGTCCA-GACAA-CATTATCAATCAACTCGTATTGC---CA--A-----AGCAACTTATACCT-AC--TGCTTTAACAGGATTACACAACAATATGGGCCACCCAGGAAAAGA---------TTTT--CT-TTGTTAAGAGATAGATTCTTTTGGACAGGAATG---AATTTAGACGTAGAAAATTGGGTCAAAAATTGCGACAGATA----CTTGCG---AAGAAAATCGTCATGTCA-GA--AGGCACCAATT--GTGAATATTA-CA-TACTCATATCCCTTAGAACTAGTTTGCATAGATTATTTAACTTTAGAGCCTTGCAAAGGAGGGAT-TGCCAACATTTTAGTTTTGACAGATCATTATACAAGAT--ATGCTCAGGCTATTCCGAC-AAAAGTTC-ACCGCTAAGACAGATAACAA-----TCCCCTAACATACGTTTTGTC
gi|6 : tttcCAAGTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---AAA-AGTGGATGACCA-GATCATCAATCAACTTGCTGTACCTTCA--AG-TTTAGTAATTCATG--T-AT--TG-----AGATCCTTACACAACAACACAGAACATCCTGGAAGAGA--GAAAAC--ATTAGGT-TTAATCTGAGATAGATTCTTTTGGCCTGGACAGCACAA---AGATGTAGAAAATTGGATTAGAGAAGGTAGGAGATGTATTCTTAGG---AAA-ACACCAGCATAAGA-CA--AAGTAGAACTT--AACAACATCATCA-C-CTCACAACCTCTTCAATTGGTTTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAAGGA-GGATATGAAAATGTTCTCGTTATAACCGATTACTTTACACGGTAAATGCTATCGCCATACCAACTAGAAACACGACa
gi|8 : GATGTCCCTTAGTATTTGTGTTGCCTGAAACTGCGAATCAAGGATTGCAGATTTTCCAAAGTTTTGAG
gi|8 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcGAGACT-GACCGATCACTGGAACCTGCGCCAACAAGCAGAAGATTCCAGACACTAAACTGAACCCAGCAGCTTGATGCTGAAagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttagagactgaccgatcactggaacctgcgccaacaagcagaagattccagacactaaactgaacccagcagcttgatgctgaa
gi|9 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcgatgtcccttagtatttgtgttgcctgaaactgcgaatcaaggattgcagattttccaaagttttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttaTCAG-AACTTCAAGAAACTCAGGAT--TGGCA-ACGACATT---CTAGTACGTGAGACAAGTAAAGAA-GATGGAGAATTACGA-CACCAGT----TTATAGT-TCTTAGGGAG-TTTC----ACCATG--TTATCTTA-----CAATACCTCCATA-TGACATGGGTCACCCCGGACGAGATAA--AAC-TGT--GGCACTAGTAAGAGAGAGATTCTATTGGCCTAAGATGCACTC---GGATATTTCTAACTGGATTGACCAATGTGAGAGGTGCATC---AAGTTCAAG-ACGCC--CACAAAC-CAGAAAGCAAAGCTC--GTCAACATTACTA-C-TTC-CAACCATTAGAAATGGTCTGCATGGATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAACAAGAGGCTTTCGATACTCTTCGATAACATTTGATATCACCACCTATACTTGGATACCCGAACATGACGATTCCATACCGATGTTAGTACCAGAGGACTTGGAGCCATTCTTTACCAAGACCAGGATGGGATGAAGCGAGTCATTGGAAACACTAGCAGAGGACTTACACCAGCTGAAAGAAATTATCCTGCCCATAAGCTAGAGTTTGTAGCTTTGAAATGGTCCATCACTGAGAAAGTCAAAGATTACTTATATGGATAAAAGTTTACTGCCATTAGAGACAACAACCCGTTGACCTACATTCTATCCAATGCAAAATTAGACTCAACAGGCCATAGATGGGTTGCAGCATTATCTGCCTATGATTTCGACATCAAATACAGACCAGGCAAGAACAATGCAGCAGCAGATGCACTATCTAGATT
Unaligned ( gi|12 ): CCTTTACCAGGAACAAAGTGGTACAAAAAGAGTCATACGCGTATTGTCAGTAGAGGTCTTTGACCAGTGAAAAGCAACCTATCCTGCGCACAAACTTGAATTCTTGGCACTCAAGTGGGCTGTGTGGACAAATCTACTATGTATCTCTACGCGAAATCAGTTTCACGTCTGTAACAAGATAATAATCCTTTGACGTATGTCATATCCAAGCCAAGTTGGATGCTACAAGCCAGCAGATGGGTGGCGGCATTA
Unaligned ( gi|14 ): TAGCGCTGAAATGGACTATCACCGAGAAATTCTCAGATAATCTTCAAGGGGAAAATCACAGTTTACACCGACAACAATCCTCTGACCTATGTGTTGAGCACTGCTAAATTGGATTCAACAGGACATCGTTGGATTTCCCATTTAGCGAATTATAACTCCAAGGTCATTTACAGATCTGGGAAGCTCAACATAGATGCAGACGGATTATCTAG
Unaligned ( gi|19 ): CCCATAAGCTAGAGTTTTTAGCTTTGAAATGTTCCATCACTGAGAAATTCAAGGATCAAAGTTTACTGTCATTACAGACAACAACCCGTTAACCTACA
Unaligned ( gi|22 ): GGGTTGATGAGTGTGAGAGATGCATGAAGTTCAAGACTTCTAATCACCAGAAAGTATGATCGGTTGATATTACCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 1 4444444444 33333 333333333 1111 4444444444 22222 11 1111111 222 111 111 22222222 3333333333 111 11111 1111 1 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222 1 111 2222 111 1111 11 4444444444 1111 33333333333333 11 22222 11 1 111 1 1 1 1 2222 1 11 1 1 1 22222 1 1 1
lowQualScore : 5 1 3333 1 5 0000000000 1 1 0 22222 2 0 111111111 33 0 3 2 0 8 8 7777 5555555555 0 3 1 1 0 0 1 00000 3 11 8 8888888 000 111 6 3 6 3 1 0 1 000 6 2 1 99 6 99 44444444 5 1 1 1 1111111111 1 6 1 22 1 11 0 0 0 0 3 000 5 66 0 4 11111 0 22 8888 6 1111 1 1 1 1 8 0 99 0 3 0 3 0 777 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999 1 55555 1 7 1 1 0 777 0 2 1111 1 777 5555 1 11 8 6666666666 5 0 7777 0 8 1 8 8 88888888888888 6 1 11 1 0 8 8 88 1 3 8 8 11 3 55555 3 11 8 3 0 2 777 3 1 1 1 0 0 0 0 33 8888 0 33 0 0 0 1 55555 0 0 0 5
lowQualScore : . . .... . . .......... . . . ..... . . ......... .. . . . . . . .... .......... . . . . . . . ..... . .. . ....... ... ... . . . . . . . ... . . . .. . .. ........ . . . . .......... . . . .. . .. . . . . . ... . .. . . ..... . .. .... . .... . . . . . . .. . . . . . ... . ..................................................................................................................................................... ... . ..... . . . . . ... . . .... . ... .... . .. . .......... . . .... . . . . . .............. . . .. . . . . .. . . . . .. . ..... . .. . . . . ... . . . . . . . . .. .... . .. . . . . ..... . . . .
lowQualScore : 0 0 0000 0 5 5555555555 0 0 7 00000 5 2 000000000 55 8 2 5 8 0 0 0000 8888888888 8 2 2 0 8 8 4 00000 2 00 0 8888888 888 777 7 2 7 2 0 1 7 222 7 5 0 22 7 22 22222222 2 5 7 0 7777777777 5 7 0 00 7 77 3 6 3 1 2 000 7 99 1 3 66666 1 44 0000 0 3333 4 0 0 4 0 8 22 8 2 0 2 2 555 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333 0 00000 0 3 0 0 0 555 8 5 2222 0 555 0000 0 00 0 0000000000 0 8 0000 8 0 0 0 0 44444444444444 4 0 88 0 8 0 0 88 4 8 0 0 00 2 00000 2 00 0 2 0 5 222 7 0 0 0 0 0 0 0 55 3333 0 88 0 0 0 0 00000 0 0 2 0
consensus : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGATAAAGATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT-A--------TCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
Reference ( family-4644 ) : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAANAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGATAAAGATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT----------TCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAGNCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACNGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
gi|1 : ACCAAG-CACTGCGGAGATG-G--TCACTATTTCGTCATACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGCCCATTTCCATCTCGGAACAACCATTTGCTCAGTTACA--ACATCCACAAG--AAATAATGAAGATTGACACAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-ACCTGGATA----CAGTGCA-------------CAAGCCAAAGAAGAGCAAGTTATCTGGATCTTTTGTAGACATCA-----TTATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACCTTCC--AG-TTTAGTAGATCATG--T-AT--TA--------AGATCCTTACACAACAATATGGGACATCCTGGAATAGA--G--AAC-TATTAGGT-TTACTTCGAGATATATTTTTCTGGTCTGGACAGTACAAAGATGTTGAGAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCATAACTT--AACAACATAATCA-C-TTCACAACCCCTTAAATTGATCTGCATGGACTTCCTGTGTCTAGAGAGAAGTAAGGGA-AGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAACCTTCTTCAAT---CATTTTGTCGTACACTACGAATTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAATTCATACATAGCTCCCATTGTAAACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCCCCATATCATATTATGTTTGGACGGGAACATAACTTACCAATAGTATAGACATAGAATTTGGATTAGATAGACCAAACGAAAGATTAAGATCTCTTACCAAGTACATAAAAATCCTAAAGGAGTGATTGAGGAAATCCTACCAGTTAGCATCAGAAGCTACACGTAAAGCACAGGAAAGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGATA-C-CGAGTGCTAAT--TA-AAGTAGTAGCCT----------TCGATGGA----CGTCACAAGT-TAGCGGAA-AAATG-GGAA----------TGA-AACCCGTACATTGTGATGAAACAGCCAAATCA-AAA-CA-TTCAAGTTTACA-AT-ATACAGAGG--GAAGATGGTGTTGGAAGAG-----TGAGGATTCTGTACAGAAAC--CTACTTTTACCAAT-TGGACATG-TTGAAGGAAATTTCAACCAAAAATGAATTCCAAACCAGTTCCACCAATGCGGTCAAAACCTAAACCTAGAATGAGACTAAGGATAAGGGAAGACAGTGACATTCGGTCAACTGTAGAAAGCCTAATAGACTCGGATGAGGAGGAAGCAATCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-ATGTTGCCTGAAACCG-GAATCGAGGA-TGCAGATTTTCCATCAGTTGAGGACGCTCATCATGTTGGATAACATCTAGAAGATGATGCAG----AAGAGGAGAAT-G--CGATCA-TGGAACCTGTGCC-ACAAGCATATGA-TCCTG-----AAACTGAA-CCAGCAGC-TTACGCTGAATCAGAGACCGACGATACGAGTTCACCTGTTACTGCTCCACGCTAGGGCTAGAAGAGAGCCAGAA
gi|10 : gaGCACAGAAAC--TTACTTTTACCAAT-TGGACA------------------ACCAATGATGGATCCCAAACCAGTTCCACCA
gi|11 : AGTGCTTGCTCCA-ACGTAGTAGCCTGATTTGTGTATCGA-GGACCGTCATCACGAGTCTTGCAGACTAAGTGAGGAACATAGTTTATGAGTGATCCATCGATTGTT-TTAATC--------CATGGACCATTTCCTGTTTACA-AATGTACAAAGGAAGAAGAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggaatcgaagatgcagattttccaactgttgaggatgctcatcatgttggagaacatctagaagatg
gi|11 : TTTTACCGATATGGACATGTTTGCAG--TATattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaattttaccgatatggacatgtttgcagtat
gi|13 : agtgcttgctccaacgtagtagcctgatttgtgtatcgaggaccgtcatcacgagtcttgcagactaagtgaggaacatagtttatgagtgatccatcgattgttttaatccatggaccatttcctgtttacaaatgtacaaaggaagaagaattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaaGACAGAAGACCAACTATGACCATGAAGGCTATCAGAGCA-TTGCCTTTACTTGCAGTGTTTGGTGAATAGGGGT-TTGGT--TATAAGTCGTCGCTTAA--------T-GATGAA----AA-CATAAGA-TCGCTGAC-AAGTG-GGAA----------GA--CATCC-TAACTTGTAAGTCAACAACCAAATAA-GAA-CA--TACAGTTT-CACAA-GTTCGGAGA--GAGGATGGTA--GGGAGCGACTGATAGGTAT--TGCATCGTAATTATTACTGT--CCGAT-CGG
gi|15 : GATCGTTTCTTCTGGCCTGGGATGTCCAAAGATGTAGACCAATGGATTACAGGATGTAAGAGCTGTATTCTGAGG---AAGTCT-CCTAC-CAATATT---AGGGCAC--CTTTGGTCAATATCAACA-C-ATCCGAAGCACTAG-ATTAGTTTGCCTTGATTTCCTTTCTTTAGA
gi|16 : AATCCACCTGTAGTACTATCA--AGCTTTGCTAGATT-TG--T-AT--TG--------AGATTAGTGTACAGCAATTTAGGATGTCCAGGAAGAGA--G--AGCACATTGGGC-TTTATAAAAGGTCG------TTGGCCAGCACAATACAGGGATGTGGAAAATTAGATTa
gi|17 : gATAACCGATCACTTTACACGGT--TTGCTATTGCTATACCAACTAGAAACACAACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTTGTACCCTACAGACTTCCCAAACGT
gi|18 : GCAAGATGATCCTGAATTAT-CG-CCCTGGATA----AAGTGCATATATGATTAATACAAGCCAAAGAATAGCAATTTATCTGGATCTTATGCAGACACCA-----TCATattcattctgatcaaggg
gi|2 : TATTCTTAGG---AAAACA-CCAGCATAAGA-C---A--GCAGAACTT--AACAACATCACCA-T--TCACAACCTCTTGAATTGGGCCGCATGAATTTCCTGTGTTTAGAGAGAAGTACTGGA-GGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAGC---CATTTTGTTGTACCCTACAGACT
gi|2 : GGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGTCAATAG-----ACATATAATTTGGATAAGATAGGCTGAACGAAAGACAA-GATCTCTTACCAAGTATATAGACAACTTAAAGAAGCGAATGAGGAAATCCTACCAGTTATCATCAGAAGTTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGGAGTTG----TACTGGCAGAT---GGAGA-T-GGAGTGCTCGT--CA-AAGTAGTAGCCT----------TCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAA-GACCCATATATTGTCATTAGCCAGCCAAATCA-AGA-TA-TTCCTGTTTGCA-AA-GTACAGAGG--GAAGATGGTGTTGGAAAAG-----TGAGGATTCTGCACAGAAAC--TTACTTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|2 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaGTCAACTGCAGAAACCCTATTAGACTCGGATGAGAAGGAAGCAGTCTTCATTGAGATTCCTAGAGGAACACGACATCATCACTCTCATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAAGA-TGCAGATTTTCCAACTGTTAAGGATGCTCATCATGTTGGAGAACATTTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACTTGCGCC-ACAAACAGATGA-TCCTG-----AAACTGAA-CAAGCAGC-TGACGCTGAATCAGAGATAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|20 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacTCTTAGG---AAATCA-CCATCGCAAGA-C---AAAGCAAAACTT--AACAACATCATCACC-CCCACAGCCTCTTGAATTGGTCTGCATGGA
gi|21 : TAGAGAGAAGTAAGGGT-GGATATGAAAATGTTCTCGTTATTACCGATCATTTTACACGTT--TTGCTATCGCCATACCAA
gi|23 : CCACAAG--A--TCA--GAGATTGATATACGAAAAGCTCAACAAGATGATCCTGAACTAT-TT-CCATGGATA----CAGT
gi|24 : ATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATAAGACAGGC
gi|25 : TAC---AGAGAAGT---GAA-AGTGAATGATCA-GAGCATCAATCAACATGTTGTACCTTC
gi|3 : ACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCCTCTCAGAACAACCACTTGCTTACTTACATGG--TCCATATGGAA--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATATTGAATTAT-TG-CCCT-GATA----CAGTGCAAATATAATGGATACAAGCCGAAGAAAAGCAATCTATCTGGATCTTTTGCATACACCA-----TATTGTTCAGGAACTGCGACAAACTGAAGCTGATG--A-ACAACATTATACTAGTATAG-AGAGAAGT---GAA-AGTGGATGATCA-GATCTTGAATCAACTTGTTGCACCTTCT--GG-TTTAGTAAGTCATA--T-AT--TG--------AGATCCTTAAATAACAACATGGGACATCCTGGAAGAGA--GGAAAC--ATTAGGT-TTACTTCGAGATAGATTCTTCTAGCCTGAACAGTGCAAGGACGTAGAAAATTGGATTTGAGAATGTAGGAGATGTA
gi|4 : atgaatggcgagtcaattggatatgatacgccagcaggaggaagctatacgaccaggctgaagaacaattcatccatgccccagataaggacgctttagcgaagattgttttaggcagtttgaaataggtacatcacatgaggaaatttcgggcaagagcagactactatgttataggatcaacacctgataattgccatcaccaagacaaaccaatccatagggcctacatcgactattcatgccaaattgagccatgcaacagactttaaccagccgaccgcaatcaagagtggattgccaaggccattattcttatcactatgatctacttgattataaagatacaaaccatgggcaggggaagaaacaacgaatgattcagccacgcaagcgacagatgcacggtatcctagacttgattggagagATTGGAAATCATACAT---------TGTACACGCATACAATTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTAGACGGGAACCTAACTTACCAAAAG-----ACATAGAATTTGGATTAGATAGGCCGAACAGAACATAAAGATCCCTTACCAATTATATAGACAACTTAAAGGAGCGACTGAGGAAATCCTACCAGTTAACATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACATCTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGAGA-T-AGAGTGCTAGT--CA-AAGTAGTAGCCT----------TAGATGGA----CGTCACAAGT-TAGCGGAT-AAGTG-GGAA----------GAG-GATCCGTATATTGTGATTAGCCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGAAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAAAACGATATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAGTCGGGGA-TGCAGATTTCCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACTGG--CGATCA-TGGAACCTGTGCC-ACAAGCAGATGA-TCCAG-----AAACTGTA-CCAGCAGC-TGAGGCTGAATCAGAGACAGga
gi|5 : CAGGACAACCATTAGCCCAGCTAGA--G--TT---AAG--A------GAACTTTG-----GAGAA--TTCAGAGAGATGACCC--ACTTATTCGACTCTGGATAAACGCAGTGAAGGCAAGA---ACACT-TCCAGTGAAACACAAAAT-TCCAAA----AGGCAAAAATCACATGATCATGTGTAGGAATTTCAACAATTTGAAATCAATT--AGAGGGTATT------ATAC---AGAGAAGT---TAAGAGTCCA-GACAA-CATTATCAATCAACTCGTATTGCC---A--A-----AGCAACTTATACCT-AC--TGCTTTAACAGGAT---TACACAACAATATGGGCCACCCAGGAAAAGA---------TTTTC--T-TTGTTAAGAGATAGATTCTTTTGGACAGGAATGAATTTAGACGTAGAAAATTGGGTCAAAAATTGCGACAGATA----CTTGCG---AAGAAAATCGTCATGTCA-G---AAGGCACCAATT--GTGAATATTA-CA-TACTCATATCCCTTAGAACTAGTTTGCATAGATTATTTAACTTTAGAGCCTTGCAAAGGAGGGAT-TGCCAACATTTTAGTTTTGACAGATCATTATACAAGAT--ATGCTCAGGCTATTCCGAC-AAAAGTTC-ACCGCTAAGACAGATAACAA-----TCCCCTAACATACGTTTTGTC
gi|6 : tttcCAAGTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---AAA-AGTGGATGACCA-GATCATCAATCAACTTGCTGTACCTTCA--AG-TTTAGTAATTCATG--T-AT--TG--------AGATCCTTACACAACAACACAGAACATCCTGGAAGAGA--GAAAAC--ATTAGGT-TTAATCTGAGATAGATTCTTTTGGCCTGGACAGCACAAAGATGTAGAAAATTGGATTAGAGAAGGTAGGAGATGTATTCTTAGG---AAAACA-CCAGCATAAGA-C---AAAGTAGAACTT--AACAACATCATCA-C-CTCACAACCTCTTCAATTGGTTTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAAGGA-GGATATGAAAATGTTCTCGTTATAACCGATTACTTTACACGGTAAATGCTATCGCCATACCAACTAGAAACACGACa
gi|8 : GATGTCCCTTAGTATTTGTGTTGCCTGAAACTGCGAATCAAGGATTGCAGATTTTCCAA-AGTT
gi|8 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcGAGACT-GACCGATCACTGGAACCTGCGCCAACAAGCAGAAGATTCCAGACACTAAACTGAACCCAGCAGCTTGATGCTGAAttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttagagactgaccgatcactggaacctgcgccaacaagcagaagattccagacactaaactgaacccagcagcttgatgctgaa
gi|9 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcgatgtcccttagtatttgtgttgcctgaaactgcgaatcaaggattgcagattttccaaagttttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttaTCAG-AACTTCAAGAAACTCAGGAT--TGGCA-ACGACATT---CTAGTACGTGAGACAAGTAAAGAA-GATGGAGAATTACGA-CACCAGT----TTATAGT-TCTTAGGGAG-TTTC----ACCATG--TTATCTTA--------CAATACCTCCATA-TGACATGGGTCACCCCGGACGAGATAA--AAC-TGT--GGCACTAGTAAGAGAGAGATTCTATTGGCCTAAGATGCACTCGGATATTTCTAACTGGATTGACCAATGTGAGAGGTGCA---TCAAGTTCAAGACG-CC--CACAA-A-CCAGAAAGCAAAGCTC--GTCAACATTACTA-C-TTC-CAACCATTAGAAATGGTCTGCATGGATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAACAAGAGGCTTTCGATACTCTTCGATAACATTTGATATCACCACCTATACTTGGATACCCGAACATGACGATTCCATACCGATGTTAGTACCAGAGGACTTGGAGCCATTCTTTACCAAGACCAGGATGGGATGAAGCGAGTCATTGGAAACACTAGCAGAGGACTTACACCAGCTGAAAGAAATTATCCTGCCCATAAGCTAGAGTTTGTAGCTTTGAAATGGTCCATCACTGAGAAAGTCAAAGATTACTTATATGGATAAAAGTTTACTGCCATTAGAGACAACAACCCGTTGACCTACATTCTATCCAATGCAAAATTAGACTCAACAGGCCATAGATGGGTTGCAGCATTATCTGCCTATGATTTCGACATCAAATACAGACCAGGCAAGAACAATGCAGCAGCAGATGCACTATCTAGATT
Unaligned ( gi|12 ): CCTTTACCAGGAACAAAGTGGTACAAAAAGAGTCATACGCGTATTGTCAGTAGAGGTCTTTGACCAGTGAAAAGCAACCTATCCTGCGCACAAACTTGAATTCTTGGCACTCAAGTGGGCTGTGTGGACAAATCTACTATGTATCTCTACGCGAAATCAGTTTCACGTCTGTAACAAGATAATAATCCTTTGACGTATGTCATATCCAAGCCAAGTTGGATGCTACAAGCCAGCAGATGGGTGGCGGCATTA
Unaligned ( gi|14 ): TAGCGCTGAAATGGACTATCACCGAGAAATTCTCAGATAATCTTCAAGGGGAAAATCACAGTTTACACCGACAACAATCCTCTGACCTATGTGTTGAGCACTGCTAAATTGGATTCAACAGGACATCGTTGGATTTCCCATTTAGCGAATTATAACTCCAAGGTCATTTACAGATCTGGGAAGCTCAACATAGATGCAGACGGATTATCTAG
Unaligned ( gi|19 ): CCCATAAGCTAGAGTTTTTAGCTTTGAAATGTTCCATCACTGAGAAATTCAAGGATCAAAGTTTACTGTCATTACAGACAACAACCCGTTAACCTACA
Unaligned ( gi|22 ): GGGTTGATGAGTGTGAGAGATGCATGAAGTTCAAGACTTCTAATCACCAGAAAGTATGATCGGTTGATATTACCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 1 4444444444 33333 333333333 1111 4444444444 22222 11 1111111 222 111 111 22222222 3333333333 111 11111 1111 1 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222 1 1 111 2222 111 1111 11 44444444444 1111 33333333333333 11 22222 11 1 111 1 1 1 1 2222 1 11 1 1 1 22222 1 1 1
lowQualScore : 5 1 3333 1 5 0000000000 1 1 0 22222 2 111111111 33 0 3 2 0 8 8 7777 5555555555 0 3 1 1 0 0 1 00000 3 11 8 8888888 000 111 6 3 6 3 1 0 000 6 2 1 99 6 99 44444444 1 1 1 1111111111 5 6 1 22 1 11 0 0 0 0 3 000 5 66 0 4 11111 0 22 8888 6 1111 1 1 1 1 8 0 99 0 3 0 3 0 777 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999 55555 1 6 1 1 0 777 0 2 1111 1 777 5555 1 11 8 33333333333 0 7777 0 8 1 8 8 88888888888888 6 1 11 1 0 8 8 88 1 3 8 8 11 3 55555 3 11 8 3 0 2 777 3 1 1 1 0 0 0 0 2 8888 0 33 0 0 0 1 55555 0 0 0 5
lowQualScore : . . .... . . .......... . . . ..... . ......... .. . . . . . . .... .......... . . . . . . . ..... . .. . ....... ... ... . . . . . . ... . . . .. . .. ........ . . . .......... . . . .. . .. . . . . . ... . .. . . ..... . .. .... . .... . . . . . . .. . . . . . ... . ..................................................................................................................................................... ... ..... . . . . . ... . . .... . ... .... . .. . ........... . .... . . . . . .............. . . .. . . . . .. . . . . .. . ..... . .. . . . . ... . . . . . . . . . .... . .. . . . . ..... . . . .
lowQualScore : 0 0 0000 0 5 5555555555 0 0 7 00000 5 000000000 55 8 2 5 8 0 0 0000 8888888888 8 2 2 0 8 8 4 00000 2 00 0 8888888 888 777 7 2 7 2 0 1 222 7 5 0 22 7 22 22222222 0 7 0 7777777777 7 7 0 00 7 77 3 6 3 1 2 000 7 99 1 3 66666 1 44 0000 0 3333 4 0 0 4 0 8 22 8 2 0 2 2 555 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333 00000 0 0 0 0 0 555 8 5 2222 0 555 0000 0 00 0 44444444444 8 0000 8 0 0 0 0 44444444444444 4 0 88 0 8 0 0 88 4 8 0 0 00 2 00000 2 00 0 2 0 5 222 7 0 0 0 0 0 0 0 5 3333 0 88 0 0 0 0 00000 0 0 2 0
consensus : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTA-TCG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AAGATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCC---------TATCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
Reference ( family-4644 ) : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTA-TCG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGATAAAGATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCC---------TATCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
gi|1 : ACCAAG-CACTGCGGAGATG-G--TCACTATTTCGTCATACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGCCCATTTCCATCTCGGAACAACCATTTGCTCAGTTACA--ACATCCACAAG--AAATAATGAAGATTGACACAGAGAAAGCGCAGCAAGATGATCCTGAATTA-TCG-ACCTGGATA----CAGTGCA-------------CAAGCCAAAGAAGAGCAAGTTATCTGGATCTTTTGTAG-----ACATCATTATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACCTTCC--AG-TTTAGTAGATCATG--T-AT--TA--------AGATCCTTACACAACAATATGGGACATCCTGGAATAGA--G--AAC-TATTAGGT-TTACTTCGAGATATATTTTTCTGGTCTGGACAGTACAAAGATGTTGAGAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-C---AAAGCATAACTT--AACAACATAATCA-C-TTCACAACCCCTTAAATTGATCTGCATGGACTTCCTGTGTCTAGAGAGAAGTAAGGGA-AGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAACCTTCTTCAAT---CATTTTGTCGTACACTACGAATTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAATTCATACATAGCTCCCATTGTAAACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCCCCATATCATATTATGTTTGGACGGGAACATAACTTACCAATAGTATAGACATAGAATTTGGATTAGATAGACCAAACGAAAGATTAAGATCTCTTACCAAGTACATAAAAATCCTAAAGGAGTGATTGAGGAAATCCTACCAGTTAGCATCAGAAGCTACACGTAAAGCACAGGAAAGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGATA-C-CGAGTGCTAAT--TA-AAGTAGTAGCC---------T-TCGATGGA----CGTCACAAGT-TAGCGGAA-AAATG-GGAA----------TGA-AACCCGTACATTGTGATGAAACAGCCAAATCA-AAA-CA-TTCAAGTTTACA-AT-ATACAGAGG--GAAGATGGTGTTGGAAGAG-----TGAGGATTCTGTACAGAAAC--CTACTTTTACCAAT-TGGACATG-TTGAAGGAAATTTCAACCAAAAATGAATTCCAAACCAGTTCCACCAATGCGGTCAAAACCTAAACCTAGAATGAGACTAAGGATAAGGGAAGACAGTGACATTCGGTCAACTGTAGAAAGCCTAATAGACTCGGATGAGGAGGAAGCAATCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-ATGTTGCCTGAAACCG-GAATCGAGGA-TGCAGATTTTCCATCAGTTGAGGACGCTCATCATGTTGGATAACATCTAGAAGATGATGCAG----AAGAGGAGAAT-G--CGATCA-TGGAACCTGTGCC-ACAAGCATATGA-TCCTG-----AAACTGAA-CCAGCAGC-TTACGCTGAATCAGAGACCGACGATACGAGTTCACCTGTTACTGCTCCACGCTAGGGCTAGAAGAGAGCCAGAA
gi|10 : gaGCACAGAAAC--TTACTTTTACCAAT-TGGACA------------------ACCAATGATGGATCCCAAACCAGTTCCACCA
gi|11 : AGTGCTTGCTCCA-ACGTAGTAGCCTGATTTGTGTATCGA-GGACCGTCATCACGAGTCTTGCAGACTAAGTGAGGAACATAGTTTATGAGTGATCCATCGATTGTT-TTAATC--------CATGGACCATTTCCTGTTTACA-AATGTACAAAGGAAGAAGAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggaatcgaagatgcagattttccaactgttgaggatgctcatcatgttggagaacatctagaagatg
gi|11 : TTTTACCGATATGGACATGTTTGCAG--TATattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaattttaccgatatggacatgtttgcagtat
gi|13 : agtgcttgctccaacgtagtagcctgatttgtgtatcgaggaccgtcatcacgagtcttgcagactaagtgaggaacatagtttatgagtgatccatcgattgttttaatccatggaccatttcctgtttacaaatgtacaaaggaagaagaattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaaGACAGAAGACCAACTATGACCATGAAGGCTATCAGAGCA-TTGCCTTTACTTGCAGTGTTTGGTGAATAGGGGT-TTGGT--TATAAGTCGTCGCT---------TAATGATGAA----AA-CATAAGA-TCGCTGAC-AAGTG-GGAA----------GA--CATCC-TAACTTGTAAGTCAACAACCAAATAA-GAA-CA--TACAGTTT-CACAA-GTTCGGAGA--GAGGATGGTA--GGGAGCGACTGATAGGTAT--TGCATCGTAATTATTACTGT--CCGAT-CGG
gi|15 : GATCGTTTCTTCTGGCCTGGGATGTCCAAAGATGTAGACCAATGGATTACAGGATGTAAGAGCTGTATTCTGAGG---AAG-TCTCCTAC-CAATATT---AGGGCAC--CTTTGGTCAATATCAACA-C-ATCCGAAGCACTAG-ATTAGTTTGCCTTGATTTCCTTTCTTTAGA
gi|16 : AATCCACCTGTAGTACTATCA--AGCTTTGCTAGATT-TG--T-AT--TG--------AGATTAGTGTACAGCAATTTAGGATGTCCAGGAAGAGA--G--AGCACATTGGGC-TTTATAAAAGGTCG------TTGGCCAGCACAATACAGGGATGTGGAAAATTAGATTa
gi|17 : gATAACCGATCACTTTACACGGT--TTGCTATTGCTATACCAACTAGAAACACAACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTTGTACCCTACAGACTTCCCAAACGT
gi|18 : GCAAGATGATCCTGAATTA-TCG-CCCTGGATA----AAGTGCATATATGATTAATACAAGCCAAAGAATAGCAATTTATCTGGATCTTATGCAG-----ACACCATCATattcattctgatcaaggg
gi|2 : TATTCTTAGG---AAA-ACACCAGCATAAGA-C---A--GCAGAACTT--AACAACATCACCA-T--TCACAACCTCTTGAATTGGGCCGCATGAATTTCCTGTGTTTAGAGAGAAGTACTGGA-GGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAGC---CATTTTGTTGTACCCTACAGACT
gi|2 : GGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGTCAATAG-----ACATATAATTTGGATAAGATAGGCTGAACGAAAGAC-AAGATCTCTTACCAAGTATATAGACAACTTAAAGAAGCGAATGAGGAAATCCTACCAGTTATCATCAGAAGTTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGGAGTTG----TACTGGCAGAT---GGAGA-T-GGAGTGCTCGT--CA-AAGTAGTAGCC---------T-TCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAA-GACCCATATATTGTCATTAGCCAGCCAAATCA-AGA-TA-TTCCTGTTTGCA-AA-GTACAGAGG--GAAGATGGTGTTGGAAAAG-----TGAGGATTCTGCACAGAAAC--TTACTTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|2 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaGTCAACTGCAGAAACCCTATTAGACTCGGATGAGAAGGAAGCAGTCTTCATTGAGATTCCTAGAGGAACACGACATCATCACTCTCATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAAGA-TGCAGATTTTCCAACTGTTAAGGATGCTCATCATGTTGGAGAACATTTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACTTGCGCC-ACAAACAGATGA-TCCTG-----AAACTGAA-CAAGCAGC-TGACGCTGAATCAGAGATAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|20 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacTCTTAGG---AAA-TCACCATCGCAAGA-C---AAAGCAAAACTT--AACAACATCATCACC-CCCACAGCCTCTTGAATTGGTCTGCATGGA
gi|21 : TAGAGAGAAGTAAGGGT-GGATATGAAAATGTTCTCGTTATTACCGATCATTTTACACGTT--TTGCTATCGCCATACCAA
gi|23 : CCACAAG--A--TCA--GAGATTGATATACGAAAAGCTCAACAAGATGATCCTGAACTA-TTT-CCATGGATA----CAGT
gi|24 : ATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATAAGACAGGC
gi|25 : TAC---AGAGAAGT---GAA-AGTGAATGATCA-GAGCATCAATCAACATGTTGTACCTTC
gi|3 : ACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCCTCTCAGAACAACCACTTGCTTACTTACATGG--TCCATATGGAA--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATATTGAATTA-TTG-CCCT-GATA----CAGTGCAAATATAATGGATACAAGCCGAAGAAAAGCAATCTATCTGGATCTTTTGCAT-----ACACCATATTGTTCAGGAACTGCGACAAACTGAAGCTGATG--A-ACAACATTATACTAGTATAG-AGAGAAGT---GAA-AGTGGATGATCA-GATCTTGAATCAACTTGTTGCACCTTCT--GG-TTTAGTAAGTCATA--T-AT--TG--------AGATCCTTAAATAACAACATGGGACATCCTGGAAGAGA--GGAAAC--ATTAGGT-TTACTTCGAGATAGATTCTTCTAGCCTGAACAGTGCAAGGACGTAGAAAATTGGATTTGAGAATGTAGGAGATGTA
gi|4 : atgaatggcgagtcaattggatatgatacgccagcaggaggaagctatacgaccaggctgaagaacaattcatccatgccccagataaggacgctttagcgaagattgttttaggcagtttgaaataggtacatcacatgaggaaatttcgggcaagagcagactactatgttataggatcaacacctgataattgccatcaccaagacaaaccaatccatagggcctacatcgactattcatgccaaattgagccatgcaacagactttaaccagccgaccgcaatcaagagtggattgccaaggccattattcttatcactatgatctacttgattataaagatacaaaccatgggcaggggaagaaacaacgaatgattcagccacgcaagcgacagatgcacggtatcctagacttgattggagagATTGGAAATCATACAT---------TGTACACGCATACAATTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTAGACGGGAACCTAACTTACCAAAAG-----ACATAGAATTTGGATTAGATAGGCCGAACAGAACATAAAGATCCCTTACCAATTATATAGACAACTTAAAGGAGCGACTGAGGAAATCCTACCAGTTAACATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACATCTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGAGA-T-AGAGTGCTAGT--CA-AAGTAGTAGCC---------T-TAGATGGA----CGTCACAAGT-TAGCGGAT-AAGTG-GGAA----------GAG-GATCCGTATATTGTGATTAGCCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGAAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAAAACGATATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAGTCGGGGA-TGCAGATTTCCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACTGG--CGATCA-TGGAACCTGTGCC-ACAAGCAGATGA-TCCAG-----AAACTGTA-CCAGCAGC-TGAGGCTGAATCAGAGACAGga
gi|5 : CAGGACAACCATTAGCCCAGCTAGA--G--T---TAAG--A------GAACTTTG-----GAGAA--TTCAGAGAGATGACCC--ACTTATTCGACTCTGGATAAACGCAGTGAAGGCAAGA---ACAC-TTCCAGTGAAACACAAAAT-TCCAAA----AGGCAAAAATCACATGATCATGTGTAGGAATTTCAACAATTTGAAATCAATT--AGAGGGTATT------ATAC---AGAGAAGT---TAAGAGTCCA-GACAA-CATTATCAATCAACTCGTATTGC---CA--A-----AGCAACTTATACCT-AC--TGCTTTAACAGGA---TTACACAACAATATGGGCCACCCAGGAAAAGA---------TTTT--CT-TTGTTAAGAGATAGATTCTTTTGGACAGGAATGAATTTAGACGTAGAAAATTGGGTCAAAAATTGCGACAGATA----CTTGCG---AAGAAAATCGTCATGTCA-G---AAGGCACCAATT--GTGAATATTA-CA-TACTCATATCCCTTAGAACTAGTTTGCATAGATTATTTAACTTTAGAGCCTTGCAAAGGAGGGAT-TGCCAACATTTTAGTTTTGACAGATCATTATACAAGAT--ATGCTCAGGCTATTCCGAC-AAAAGTTC-ACCGCTAAGACAGATAACAA-----TCCCCTAACATACGTTTTGTC
gi|6 : tttcCAAGTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---AAA-AGTGGATGACCA-GATCATCAATCAACTTGCTGTACCTTCA--AG-TTTAGTAATTCATG--T-AT--TG--------AGATCCTTACACAACAACACAGAACATCCTGGAAGAGA--GAAAAC--ATTAGGT-TTAATCTGAGATAGATTCTTTTGGCCTGGACAGCACAAAGATGTAGAAAATTGGATTAGAGAAGGTAGGAGATGTATTCTTAGG---AAA-ACACCAGCATAAGA-C---AAAGTAGAACTT--AACAACATCATCA-C-CTCACAACCTCTTCAATTGGTTTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAAGGA-GGATATGAAAATGTTCTCGTTATAACCGATTACTTTACACGGTAAATGCTATCGCCATACCAACTAGAAACACGACa
gi|8 : GATGTCCCTTAGTATTTGTGTTGCCTGAAACTGCGAATCAAGGATTGCAGATTTTCCAA-AGTT
gi|8 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcGAGACT-GACCGATCACTGGAACCTGCGCCAACAAGCAGAAGATTCCAGACACTAAACTGAACCCAGCAGCTTGATGCTGAAttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttagagactgaccgatcactggaacctgcgccaacaagcagaagattccagacactaaactgaacccagcagcttgatgctgaa
gi|9 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcgatgtcccttagtatttgtgttgcctgaaactgcgaatcaaggattgcagattttccaaagttttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttaTCAG-AACTTCAAGAAACTCAGGAT--TGGCA-ACGACATT---CTAGTACGTGAGACAAGTAAAGAA-GATGGAGAATTACGA-CACCAGT----TTATAGT-TCTTAGGGAG-TTTC----ACCATG--TTATCTTA--------CAATACCTCCATA-TGACATGGGTCACCCCGGACGAGATAA--AAC-TGT--GGCACTAGTAAGAGAGAGATTCTATTGGCCTAAGATGCACTCGGATATTTCTAACTGGATTGACCAATGTGAGAGGTGCA---TCAAGTTCAAG-ACGCC--CACAA-A-CCAGAAAGCAAAGCTC--GTCAACATTACTA-C-TTC-CAACCATTAGAAATGGTCTGCATGGATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAACAAGAGGCTTTCGATACTCTTCGATAACATTTGATATCACCACCTATACTTGGATACCCGAACATGACGATTCCATACCGATGTTAGTACCAGAGGACTTGGAGCCATTCTTTACCAAGACCAGGATGGGATGAAGCGAGTCATTGGAAACACTAGCAGAGGACTTACACCAGCTGAAAGAAATTATCCTGCCCATAAGCTAGAGTTTGTAGCTTTGAAATGGTCCATCACTGAGAAAGTCAAAGATTACTTATATGGATAAAAGTTTACTGCCATTAGAGACAACAACCCGTTGACCTACATTCTATCCAATGCAAAATTAGACTCAACAGGCCATAGATGGGTTGCAGCATTATCTGCCTATGATTTCGACATCAAATACAGACCAGGCAAGAACAATGCAGCAGCAGATGCACTATCTAGATT
Unaligned ( gi|12 ): CCTTTACCAGGAACAAAGTGGTACAAAAAGAGTCATACGCGTATTGTCAGTAGAGGTCTTTGACCAGTGAAAAGCAACCTATCCTGCGCACAAACTTGAATTCTTGGCACTCAAGTGGGCTGTGTGGACAAATCTACTATGTATCTCTACGCGAAATCAGTTTCACGTCTGTAACAAGATAATAATCCTTTGACGTATGTCATATCCAAGCCAAGTTGGATGCTACAAGCCAGCAGATGGGTGGCGGCATTA
Unaligned ( gi|14 ): TAGCGCTGAAATGGACTATCACCGAGAAATTCTCAGATAATCTTCAAGGGGAAAATCACAGTTTACACCGACAACAATCCTCTGACCTATGTGTTGAGCACTGCTAAATTGGATTCAACAGGACATCGTTGGATTTCCCATTTAGCGAATTATAACTCCAAGGTCATTTACAGATCTGGGAAGCTCAACATAGATGCAGACGGATTATCTAG
Unaligned ( gi|19 ): CCCATAAGCTAGAGTTTTTAGCTTTGAAATGTTCCATCACTGAGAAATTCAAGGATCAAAGTTTACTGTCATTACAGACAACAACCCGTTAACCTACA
Unaligned ( gi|22 ): GGGTTGATGAGTGTGAGAGATGCATGAAGTTCAAGACTTCTAATCACCAGAAAGTATGATCGGTTGATATTACCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 1 4444444444 33333 333333333 1111 4444444444 22222 11 1111111 222 111 111 22222222 3333333333 111 11111 1111 1 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222 1 1 1 111 2222 111 1111 11 5555555555 1111 33333333333333 11 22222 11 1 111 1 1 1 1 2222 1 11 1 1 1 22222 1 1 1
lowQualScore : 5 1 3333 1 5 0000000000 1 1 0 22222 2 0 111111111 33 0 3 2 0 8 8 7777 5555555555 0 3 1 1 0 0 1 00000 3 11 8 8888888 000 111 6 3 6 3 1 0 1 000 6 2 1 99 6 99 44444444 5 1 1 1 1111111111 1 6 1 22 1 11 0 0 0 0 3 000 5 66 0 4 11111 0 22 8888 6 1111 1 1 1 1 8 0 99 0 3 0 3 0 777 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999 55555 1 3 3 1 1 0 777 0 2 1111 1 777 5555 1 11 8 2222222222 0 7777 0 8 1 8 8 88888888888888 6 1 11 1 0 8 8 0 8 1 3 8 8 11 3 55555 3 11 8 3 0 2 777 3 1 1 1 0 0 0 0 2 8888 0 33 0 0 0 1 55555 0 0 0 5
lowQualScore : . . .... . . .......... . . . ..... . . ......... .. . . . . . . .... .......... . . . . . . . ..... . .. . ....... ... ... . . . . . . . ... . . . .. . .. ........ . . . . .......... . . . .. . .. . . . . . ... . .. . . ..... . .. .... . .... . . . . . . .. . . . . . ... . ..................................................................................................................................................... ... ..... . . . . . . ... . . .... . ... .... . .. . .......... . .... . . . . . .............. . . .. . . . . . . . . . . .. . ..... . .. . . . . ... . . . . . . . . . .... . .. . . . . ..... . . . .
lowQualScore : 0 0 0000 0 5 5555555555 0 0 7 00000 5 2 000000000 55 8 2 5 8 0 0 0000 8888888888 8 2 2 0 8 8 4 00000 2 00 0 8888888 888 777 7 2 7 2 0 1 7 222 7 5 0 22 7 22 22222222 2 5 7 0 7777777777 5 7 0 00 7 77 3 6 3 1 2 000 7 99 1 3 66666 1 44 0000 0 3333 4 0 0 4 0 8 22 8 2 0 2 2 555 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333 00000 0 3 3 0 0 0 555 8 5 2222 0 555 0000 0 00 0 4444444444 8 0000 8 0 0 0 0 44444444444444 4 0 88 0 8 0 0 8 0 4 8 0 0 00 2 00000 2 00 0 2 0 5 222 7 0 0 0 0 0 0 0 5 3333 0 88 0 0 0 0 00000 0 0 2 0
consensus : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT---------ATCGATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
Reference ( family-4644 ) : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT---------ATCGATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
gi|1 : ACCAAG-CACTGCGGAGATG-G--TCACTATTTCGTCATACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGCCCATTTCCATCTCGGAACAACCATTTGCTCAGTTACA--ACATCCACAAG--AAATAATGAAGATTGACACAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-ACCTGGATA----CAGTGCA-------------CAAGCCAAAGAAGAGCAAGTTATCTGGATCTTTTGTAGACATCA-----TTATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACCTTCC--AG-TTTAGTAGATCATG--T-AT--TA--------AGATCCTTACACAACAATATGGGACATCCTGGAATAGA--G--AAC-TATTAGGT-TTACTTCGAGATATATTTTTCTGGTCTGGACAGTACAAAGATGTTGAGAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCATAACTT--AACAACATAATCA-C-TTCACAACCCCTTAAATTGATCTGCATGGACTTCCTGTGTCTAGAGAGAAGTAAGGGA-AGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAACCTTCTTCAAT---CATTTTGTCGTACACTACGAATTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAATTCATACATAGCTCCCATTGTAAACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCCCCATATCATATTATGTTTGGACGGGAACATAACTTACCAATAGTATAGACATAGAATTTGGATTAGATAGACCAAACGAAAGATTAA-GATCTCTTACCAAGTACATAAAAATCCTAAAGGAGTGATTGAGGAAATCCTACCAGTTAGCATCAGAAGCTACACGTAAAGCACAGGAAAGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGATA-C-CGAGTGCTAAT--TA-AAGTAGTAGCCT----------TCGATGGAC----GTCACAAGT-TAGCGGAA-AAATG-GGAA----------TGA-AACCCGTACATTGTGATGAAACAGCCAAATCA-AAAC-ATT-CAAGTTTACA-AT-ATACAGAGG--GAAGATGGTGTTGGAAGAG-----TGAGGATTCTGTACAGAAAC--CTACTTTTACCAAT-TGGACATG-TTGAAGGAAATTTCAACCAAAAATGAATTCCAAACCAGTTCCACCAATGCGGTCAAAACCTAAACCTAGAATGAGACTAAGGATAAGGGAAGACAGTGACATTCGGTCAACTGTAGAAAGCCTAATAGACTCGGATGAGGAGGAAGCAATCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-ATGTTGCCTGAAACCG-GAATCGAGGA-TGCAGATTTTCCATCAGTTGAGGACGCTCATCATGTTGGATAACATCTAGAAGATGATGCAG----AAGAGGAGAAT-G--CGATCA-TGGAACCTGTGCC-ACAAGCATATGA-TCCTG-----AAACTGAA-CCAGCAGC-TTACGCTGAATCAGAGACCGACGATACGAGTTCACCTGTTACTGCTCCACGCTAGGGCTAGAAGAGAGCCAGAA
gi|10 : gaGCACAGAAAC--TTACTTTTACCAAT-TGGACA------------------ACCAATGATGGATCCCAAACCAGTTCCACCA
gi|11 : AGTGCTTGCTCCA-ACGTAGTAGCCTGATTTGTGTATCGA-GGACCGTCATCACGAGTCTTGCAGACTAAGTGAGGAACATAGTTTATGAGTGATCCATCGATTGTT-TTAATC--------CATGGACCATTTCCTGTTTACA-AATGTACAAAGGAAGAAGAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggaatcgaagatgcagattttccaactgttgaggatgctcatcatgttggagaacatctagaagatg
gi|11 : TTTTACCGATATGGACATGTTTGCAG--TATattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaattttaccgatatggacatgtttgcagtat
gi|13 : agtgcttgctccaacgtagtagcctgatttgtgtatcgaggaccgtcatcacgagtcttgcagactaagtgaggaacatagtttatgagtgatccatcgattgttttaatccatggaccatttcctgtttacaaatgtacaaaggaagaagaattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaaGACAGAAGACCAACTATGACCATGAAGGCTATCAGAGCA-TTGCCTTTACTTGCAGTGTTTGGTGAATAGGGGT-TTGGT--TATAAGTCGTCGCTT---------AATGATGAAA----A-CATAAGA-TCGCTGAC-AAGTG-GGAA----------GA--CATCC-TAACTTGTAAGTCAACAACCAAATAA-GAAC-A-T-ACAGTTT-CACAA-GTTCGGAGA--GAGGATGGTA--GGGAGCGACTGATAGGTAT--TGCATCGTAATTATTACTGT--CCGAT-CGG
gi|15 : GATCGTTTCTTCTGGCCTGGGATGTCCAAAGATGTAGACCAATGGATTACAGGATGTAAGAGCTGTATTCTGAGG---AAGTCT-CCTAC-CAATATT---AGGGCAC--CTTTGGTCAATATCAACA-C-ATCCGAAGCACTAG-ATTAGTTTGCCTTGATTTCCTTTCTTTAGA
gi|16 : AATCCACCTGTAGTACTATCA--AGCTTTGCTAGATT-TG--T-AT--TG--------AGATTAGTGTACAGCAATTTAGGATGTCCAGGAAGAGA--G--AGCACATTGGGC-TTTATAAAAGGTCG------TTGGCCAGCACAATACAGGGATGTGGAAAATTAGATTa
gi|17 : gATAACCGATCACTTTACACGGT--TTGCTATTGCTATACCAACTAGAAACACAACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTTGTACCCTACAGACTTCCCAAACGT
gi|18 : GCAAGATGATCCTGAATTAT-CG-CCCTGGATA----AAGTGCATATATGATTAATACAAGCCAAAGAATAGCAATTTATCTGGATCTTATGCAGACACCA-----TCATattcattctgatcaaggg
gi|2 : TATTCTTAGG---AAAACA-CCAGCATAAGA-C---A--GCAGAACTT--AACAACATCACCA-T--TCACAACCTCTTGAATTGGGCCGCATGAATTTCCTGTGTTTAGAGAGAAGTACTGGA-GGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAGC---CATTTTGTTGTACCCTACAGACT
gi|2 : GGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGTCAATAG-----ACATATAATTTGGATAAGATAGGCTGAACGAAAGAC-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGAAGCGAATGAGGAAATCCTACCAGTTATCATCAGAAGTTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGGAGTTG----TACTGGCAGAT---GGAGA-T-GGAGTGCTCGT--CA-AAGTAGTAGCCT----------TCGATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAA-GACCCATATATTGTCATTAGCCAGCCAAATCA-AGAT-ATT-CCTGTTTGCA-AA-GTACAGAGG--GAAGATGGTGTTGGAAAAG-----TGAGGATTCTGCACAGAAAC--TTACTTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|2 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaGTCAACTGCAGAAACCCTATTAGACTCGGATGAGAAGGAAGCAGTCTTCATTGAGATTCCTAGAGGAACACGACATCATCACTCTCATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAAGA-TGCAGATTTTCCAACTGTTAAGGATGCTCATCATGTTGGAGAACATTTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACTTGCGCC-ACAAACAGATGA-TCCTG-----AAACTGAA-CAAGCAGC-TGACGCTGAATCAGAGATAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|20 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacTCTTAGG---AAATCA-CCATCGCAAGA-C---AAAGCAAAACTT--AACAACATCATCACC-CCCACAGCCTCTTGAATTGGTCTGCATGGA
gi|21 : TAGAGAGAAGTAAGGGT-GGATATGAAAATGTTCTCGTTATTACCGATCATTTTACACGTT--TTGCTATCGCCATACCAA
gi|23 : CCACAAG--A--TCA--GAGATTGATATACGAAAAGCTCAACAAGATGATCCTGAACTAT-TT-CCATGGATA----CAGT
gi|24 : ATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATAAGACAGGC
gi|25 : TAC---AGAGAAGT---GAA-AGTGAATGATCA-GAGCATCAATCAACATGTTGTACCTTC
gi|3 : ACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCCTCTCAGAACAACCACTTGCTTACTTACATGG--TCCATATGGAA--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATATTGAATTAT-TG-CCCT-GATA----CAGTGCAAATATAATGGATACAAGCCGAAGAAAAGCAATCTATCTGGATCTTTTGCATACACCA-----TATTGTTCAGGAACTGCGACAAACTGAAGCTGATG--A-ACAACATTATACTAGTATAG-AGAGAAGT---GAA-AGTGGATGATCA-GATCTTGAATCAACTTGTTGCACCTTCT--GG-TTTAGTAAGTCATA--T-AT--TG--------AGATCCTTAAATAACAACATGGGACATCCTGGAAGAGA--GGAAAC--ATTAGGT-TTACTTCGAGATAGATTCTTCTAGCCTGAACAGTGCAAGGACGTAGAAAATTGGATTTGAGAATGTAGGAGATGTA
gi|4 : atgaatggcgagtcaattggatatgatacgccagcaggaggaagctatacgaccaggctgaagaacaattcatccatgccccagataaggacgctttagcgaagattgttttaggcagtttgaaataggtacatcacatgaggaaatttcgggcaagagcagactactatgttataggatcaacacctgataattgccatcaccaagacaaaccaatccatagggcctacatcgactattcatgccaaattgagccatgcaacagactttaaccagccgaccgcaatcaagagtggattgccaaggccattattcttatcactatgatctacttgattataaagatacaaaccatgggcaggggaagaaacaacgaatgattcagccacgcaagcgacagatgcacggtatcctagacttgattggagagATTGGAAATCATACAT---------TGTACACGCATACAATTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTAGACGGGAACCTAACTTACCAAAAG-----ACATAGAATTTGGATTAGATAGGCCGAACAGAACAT-AAAGATCCCTTACCAATTATATAGACAACTTAAAGGAGCGACTGAGGAAATCCTACCAGTTAACATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACATCTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGAGA-T-AGAGTGCTAGT--CA-AAGTAGTAGCCT----------TAGATGGAC----GTCACAAGT-TAGCGGAT-AAGTG-GGAA----------GAG-GATCCGTATATTGTGATTAGCCAGCCAAATCA-AGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGAAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAAAACGATATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAGTCGGGGA-TGCAGATTTCCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACTGG--CGATCA-TGGAACCTGTGCC-ACAAGCAGATGA-TCCAG-----AAACTGTA-CCAGCAGC-TGAGGCTGAATCAGAGACAGga
gi|5 : CAGGACAACCATTAGCCCAGCTAGA--G--TT---AAG--A------GAACTTTG-----GAGAA--TTCAGAGAGATGACCC--ACTTATTCGACTCTGGATAAACGCAGTGAAGGCAAGA---ACACT-TCCAGTGAAACACAAAAT-TCCAAA----AGGCAAAAATCACATGATCATGTGTAGGAATTTCAACAATTTGAAATCAATT--AGAGGGTATT------ATAC---AGAGAAGT---TAAGAGTCCA-GACAA-CATTATCAATCAACTCGTATTGCC---A--A-----AGCAACTTATACCT-AC--TGCTTTAACAGGAT---TACACAACAATATGGGCCACCCAGGAAAAGA---------TTTTC--T-TTGTTAAGAGATAGATTCTTTTGGACAGGAATGAATTTAGACGTAGAAAATTGGGTCAAAAATTGCGACAGATA----CTTGCG---AAGAAAATCGTCATGTCA-G---AAGGCACCAATT--GTGAATATTA-CA-TACTCATATCCCTTAGAACTAGTTTGCATAGATTATTTAACTTTAGAGCCTTGCAAAGGAGGGAT-TGCCAACATTTTAGTTTTGACAGATCATTATACAAGAT--ATGCTCAGGCTATTCCGAC-AAAAGTTC-ACCGCTAAGACAGATAACAA-----TCCCCTAACATACGTTTTGTC
gi|6 : tttcCAAGTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---AAA-AGTGGATGACCA-GATCATCAATCAACTTGCTGTACCTTCA--AG-TTTAGTAATTCATG--T-AT--TG--------AGATCCTTACACAACAACACAGAACATCCTGGAAGAGA--GAAAAC--ATTAGGT-TTAATCTGAGATAGATTCTTTTGGCCTGGACAGCACAAAGATGTAGAAAATTGGATTAGAGAAGGTAGGAGATGTATTCTTAGG---AAAACA-CCAGCATAAGA-C---AAAGTAGAACTT--AACAACATCATCA-C-CTCACAACCTCTTCAATTGGTTTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAAGGA-GGATATGAAAATGTTCTCGTTATAACCGATTACTTTACACGGTAAATGCTATCGCCATACCAACTAGAAACACGACa
gi|8 : GATGTCCCTTAGTATTTGTGTTGCCTGAAACTGCGAATCAAGGATTGCAGATTTTCCAA-AGTT
gi|8 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcGAGACT-GACCGATCACTGGAACCTGCGCCAACAAGCAGAAGATTCCAGACACTAAACTGAACCCAGCAGCTTGATGCTGAAttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttagagactgaccgatcactggaacctgcgccaacaagcagaagattccagacactaaactgaacccagcagcttgatgctgaa
gi|9 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcgatgtcccttagtatttgtgttgcctgaaactgcgaatcaaggattgcagattttccaaagttttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttaTCAG-AACTTCAAGAAACTCAGGAT--TGGCA-ACGACATT---CTAGTACGTGAGACAAGTAAAGAA-GATGGAGAATTACGA-CACCAGT----TTATAGT-TCTTAGGGAG-TTTC----ACCATG--TTATCTTA--------CAATACCTCCATA-TGACATGGGTCACCCCGGACGAGATAA--AAC-TGT--GGCACTAGTAAGAGAGAGATTCTATTGGCCTAAGATGCACTCGGATATTTCTAACTGGATTGACCAATGTGAGAGGTGCA---TCAAGTTCAAGACG-CC--CACAA-A-CCAGAAAGCAAAGCTC--GTCAACATTACTA-C-TTC-CAACCATTAGAAATGGTCTGCATGGATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAACAAGAGGCTTTCGATACTCTTCGATAACATTTGATATCACCACCTATACTTGGATACCCGAACATGACGATTCCATACCGATGTTAGTACCAGAGGACTTGGAGCCATTCTTTACCAAGACCAGGATGGGATGAAGCGAGTCATTGGAAACACTAGCAGAGGACTTACACCAGCTGAAAGAAATTATCCTGCCCATAAGCTAGAGTTTGTAGCTTTGAAATGGTCCATCACTGAGAAAGTCAAAGATTACTTATATGGATAAAAGTTTACTGCCATTAGAGACAACAACCCGTTGACCTACATTCTATCCAATGCAAAATTAGACTCAACAGGCCATAGATGGGTTGCAGCATTATCTGCCTATGATTTCGACATCAAATACAGACCAGGCAAGAACAATGCAGCAGCAGATGCACTATCTAGATT
Unaligned ( gi|12 ): CCTTTACCAGGAACAAAGTGGTACAAAAAGAGTCATACGCGTATTGTCAGTAGAGGTCTTTGACCAGTGAAAAGCAACCTATCCTGCGCACAAACTTGAATTCTTGGCACTCAAGTGGGCTGTGTGGACAAATCTACTATGTATCTCTACGCGAAATCAGTTTCACGTCTGTAACAAGATAATAATCCTTTGACGTATGTCATATCCAAGCCAAGTTGGATGCTACAAGCCAGCAGATGGGTGGCGGCATTA
Unaligned ( gi|14 ): TAGCGCTGAAATGGACTATCACCGAGAAATTCTCAGATAATCTTCAAGGGGAAAATCACAGTTTACACCGACAACAATCCTCTGACCTATGTGTTGAGCACTGCTAAATTGGATTCAACAGGACATCGTTGGATTTCCCATTTAGCGAATTATAACTCCAAGGTCATTTACAGATCTGGGAAGCTCAACATAGATGCAGACGGATTATCTAG
Unaligned ( gi|19 ): CCCATAAGCTAGAGTTTTTAGCTTTGAAATGTTCCATCACTGAGAAATTCAAGGATCAAAGTTTACTGTCATTACAGACAACAACCCGTTAACCTACA
Unaligned ( gi|22 ): GGGTTGATGAGTGTGAGAGATGCATGAAGTTCAAGACTTCTAATCACCAGAAAGTATGATCGGTTGATATTACCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 1 4444444444 33333 333333333 1111 4444444444 22222 11 1111111 222 111 111 22222222 3333333333 111 11111 1111 1 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222 1 1 1 111 2222 111 1111 11 5555555555 1111 33333333333333 11 22222 11 1 111 1 1 1 1 2222 1 11 1 1 1 22222 1 1 1
lowQualScore : 5 1 3333 1 5 0000000000 1 1 0 22222 2 0 111111111 33 0 3 2 0 8 8 7777 5555555555 0 3 1 1 0 0 1 00000 3 11 8 8888888 000 111 6 3 6 3 1 0 1 000 6 2 1 99 6 99 44444444 5 1 1 1 1111111111 1 6 1 22 1 11 0 0 0 0 3 000 5 66 0 4 11111 0 22 8888 6 1111 1 1 1 1 8 0 99 0 3 0 3 0 777 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999 55555 1 3 3 1 1 0 777 0 2 1111 1 777 5555 1 11 8 2222222222 0 7777 0 8 1 8 8 88888888888888 6 1 11 1 0 8 8 0 8 1 3 8 8 11 3 55555 3 11 8 3 0 2 777 3 1 1 1 0 0 0 0 2 8888 0 33 0 0 0 1 55555 0 0 0 5
lowQualScore : . . .... . . .......... . . . ..... . . ......... .. . . . . . . .... .......... . . . . . . . ..... . .. . ....... ... ... . . . . . . . ... . . . .. . .. ........ . . . . .......... . . . .. . .. . . . . . ... . .. . . ..... . .. .... . .... . . . . . . .. . . . . . ... . ..................................................................................................................................................... ... ..... . . . . . . ... . . .... . ... .... . .. . .......... . .... . . . . . .............. . . .. . . . . . . . . . . .. . ..... . .. . . . . ... . . . . . . . . . .... . .. . . . . ..... . . . .
lowQualScore : 0 0 0000 0 5 5555555555 0 0 7 00000 5 2 000000000 55 8 2 5 8 0 0 0000 8888888888 8 2 2 0 8 8 4 00000 2 00 0 8888888 888 777 7 2 7 2 0 1 7 222 7 5 0 22 7 22 22222222 2 5 7 0 7777777777 5 7 0 00 7 77 3 6 3 1 2 000 7 99 1 3 66666 1 44 0000 0 3333 4 0 0 4 0 8 22 8 2 0 2 2 555 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333 00000 0 3 3 0 0 0 555 8 5 2222 0 555 0000 0 00 0 4444444444 8 0000 8 0 0 0 0 44444444444444 4 0 88 0 8 0 0 8 0 4 8 0 0 00 2 00000 2 00 0 2 0 5 222 7 0 0 0 0 0 0 0 5 3333 0 88 0 0 0 0 00000 0 0 2 0
consensus : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT---------ATCGATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
Reference ( family-4644 ) : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT---------ATCGATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
gi|1 : ACCAAG-CACTGCGGAGATG-G--TCACTATTTCGTCATACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGCCCATTTCCATCTCGGAACAACCATTTGCTCAGTTACA--ACATCCACAAG--AAATAATGAAGATTGACACAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-ACCTGGATA----CAGTGCA-------------CAAGCCAAAGAAGAGCAAGTTATCTGGATCTTTTGTAGACATCA-----TTATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACCTTCC--AG-TTTAGTAGATCATG--T-AT--TA--------AGATCCTTACACAACAATATGGGACATCCTGGAATAGA--G--AAC-TATTAGGT-TTACTTCGAGATATATTTTTCTGGTCTGGACAGTACAAAGATGTTGAGAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCATAACTT--AACAACATAATCA-C-TTCACAACCCCTTAAATTGATCTGCATGGACTTCCTGTGTCTAGAGAGAAGTAAGGGA-AGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAACCTTCTTCAAT---CATTTTGTCGTACACTACGAATTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAATTCATACATAGCTCCCATTGTAAACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCCCCATATCATATTATGTTTGGACGGGAACATAACTTACCAATAGTATAGACATAGAATTTGGATTAGATAGACCAAACGAAAGATTAA-GATCTCTTACCAAGTACATAAAAATCCTAAAGGAGTGATTGAGGAAATCCTACCAGTTAGCATCAGAAGCTACACGTAAAGCACAGGAAAGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGATA-C-CGAGTGCTAAT--TA-AAGTAGTAGCCT----------TCGATGGAC----GTCACAAGT-TAGCGGAA-AAATG-GGAA----------TGA-AACCCGTACATTGTGATGAAACAGCCAAATCA-AAAC-ATT-CAAGTTTACA-AT-ATACAGAGG--GAAGATGGTGTTGGAAGAG-----TGAGGATTCTGTACAGAAAC--CTACTTTTACCAAT-TGGACATG-TTGAAGGAAATTTCAACCAAAAATGAATTCCAAACCAGTTCCACCAATGCGGTCAAAACCTAAACCTAGAATGAGACTAAGGATAAGGGAAGACAGTGACATTCGGTCAACTGTAGAAAGCCTAATAGACTCGGATGAGGAGGAAGCAATCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-ATGTTGCCTGAAACCG-GAATCGAGGA-TGCAGATTTTCCATCAGTTGAGGACGCTCATCATGTTGGATAACATCTAGAAGATGATGCAG----AAGAGGAGAAT-G--CGATCA-TGGAACCTGTGCC-ACAAGCATATGA-TCCTG-----AAACTGAA-CCAGCAGC-TTACGCTGAATCAGAGACCGACGATACGAGTTCACCTGTTACTGCTCCACGCTAGGGCTAGAAGAGAGCCAGAA
gi|10 : gaGCACAGAAAC--TTACTTTTACCAAT-TGGACA------------------ACCAATGATGGATCCCAAACCAGTTCCACCA
gi|11 : AGTGCTTGCTCCA-ACGTAGTAGCCTGATTTGTGTATCGA-GGACCGTCATCACGAGTCTTGCAGACTAAGTGAGGAACATAGTTTATGAGTGATCCATCGATTGTT-TTAATC--------CATGGACCATTTCCTGTTTACA-AATGTACAAAGGAAGAAGAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggaatcgaagatgcagattttccaactgttgaggatgctcatcatgttggagaacatctagaagatg
gi|11 : TTTTACCGATATGGACATGTTTGCAG--TATattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaattttaccgatatggacatgtttgcagtat
gi|13 : agtgcttgctccaacgtagtagcctgatttgtgtatcgaggaccgtcatcacgagtcttgcagactaagtgaggaacatagtttatgagtgatccatcgattgttttaatccatggaccatttcctgtttacaaatgtacaaaggaagaagaattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaaGACAGAAGACCAACTATGACCATGAAGGCTATCAGAGCA-TTGCCTTTACTTGCAGTGTTTGGTGAATAGGGGT-TTGGT--TATAAGTCGTCGCTT---------AATGATGAAA----A-CATAAGA-TCGCTGAC-AAGTG-GGAA----------GA--CATCC-TAACTTGTAAGTCAACAACCAAATAA-GAAC-A-T-ACAGTTT-CACAA-GTTCGGAGA--GAGGATGGTA--GGGAGCGACTGATAGGTAT--TGCATCGTAATTATTACTGT--CCGAT-CGG
gi|15 : GATCGTTTCTTCTGGCCTGGGATGTCCAAAGATGTAGACCAATGGATTACAGGATGTAAGAGCTGTATTCTGAGG---AAGTCT-CCTAC-CAATATT---AGGGCAC--CTTTGGTCAATATCAACA-C-ATCCGAAGCACTAG-ATTAGTTTGCCTTGATTTCCTTTCTTTAGA
gi|16 : AATCCACCTGTAGTACTATCA--AGCTTTGCTAGATT-TG--T-AT--TG--------AGATTAGTGTACAGCAATTTAGGATGTCCAGGAAGAGA--G--AGCACATTGGGC-TTTATAAAAGGTCG------TTGGCCAGCACAATACAGGGATGTGGAAAATTAGATTa
gi|17 : gATAACCGATCACTTTACACGGT--TTGCTATTGCTATACCAACTAGAAACACAACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTTGTACCCTACAGACTTCCCAAACGT
gi|18 : GCAAGATGATCCTGAATTAT-CG-CCCTGGATA----AAGTGCATATATGATTAATACAAGCCAAAGAATAGCAATTTATCTGGATCTTATGCAGACACCA-----TCATattcattctgatcaaggg
gi|2 : TATTCTTAGG---AAAACA-CCAGCATAAGA-C---A--GCAGAACTT--AACAACATCACCA-T--TCACAACCTCTTGAATTGGGCCGCATGAATTTCCTGTGTTTAGAGAGAAGTACTGGA-GGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAGC---CATTTTGTTGTACCCTACAGACT
gi|2 : GGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGTCAATAG-----ACATATAATTTGGATAAGATAGGCTGAACGAAAGAC-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGAAGCGAATGAGGAAATCCTACCAGTTATCATCAGAAGTTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGGAGTTG----TACTGGCAGAT---GGAGA-T-GGAGTGCTCGT--CA-AAGTAGTAGCCT----------TCGATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAA-GACCCATATATTGTCATTAGCCAGCCAAATCA-AGAT-ATT-CCTGTTTGCA-AA-GTACAGAGG--GAAGATGGTGTTGGAAAAG-----TGAGGATTCTGCACAGAAAC--TTACTTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|2 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaGTCAACTGCAGAAACCCTATTAGACTCGGATGAGAAGGAAGCAGTCTTCATTGAGATTCCTAGAGGAACACGACATCATCACTCTCATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAAGA-TGCAGATTTTCCAACTGTTAAGGATGCTCATCATGTTGGAGAACATTTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACTTGCGCC-ACAAACAGATGA-TCCTG-----AAACTGAA-CAAGCAGC-TGACGCTGAATCAGAGATAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|20 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacTCTTAGG---AAATCA-CCATCGCAAGA-C---AAAGCAAAACTT--AACAACATCATCACC-CCCACAGCCTCTTGAATTGGTCTGCATGGA
gi|21 : TAGAGAGAAGTAAGGGT-GGATATGAAAATGTTCTCGTTATTACCGATCATTTTACACGTT--TTGCTATCGCCATACCAA
gi|23 : CCACAAG--A--TCA--GAGATTGATATACGAAAAGCTCAACAAGATGATCCTGAACTAT-TT-CCATGGATA----CAGT
gi|24 : ATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATAAGACAGGC
gi|25 : TAC---AGAGAAGT---GAA-AGTGAATGATCA-GAGCATCAATCAACATGTTGTACCTTC
gi|3 : ACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCCTCTCAGAACAACCACTTGCTTACTTACATGG--TCCATATGGAA--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATATTGAATTAT-TG-CCCT-GATA----CAGTGCAAATATAATGGATACAAGCCGAAGAAAAGCAATCTATCTGGATCTTTTGCATACACCA-----TATTGTTCAGGAACTGCGACAAACTGAAGCTGATG--A-ACAACATTATACTAGTATAG-AGAGAAGT---GAA-AGTGGATGATCA-GATCTTGAATCAACTTGTTGCACCTTCT--GG-TTTAGTAAGTCATA--T-AT--TG--------AGATCCTTAAATAACAACATGGGACATCCTGGAAGAGA--GGAAAC--ATTAGGT-TTACTTCGAGATAGATTCTTCTAGCCTGAACAGTGCAAGGACGTAGAAAATTGGATTTGAGAATGTAGGAGATGTA
gi|4 : atgaatggcgagtcaattggatatgatacgccagcaggaggaagctatacgaccaggctgaagaacaattcatccatgccccagataaggacgctttagcgaagattgttttaggcagtttgaaataggtacatcacatgaggaaatttcgggcaagagcagactactatgttataggatcaacacctgataattgccatcaccaagacaaaccaatccatagggcctacatcgactattcatgccaaattgagccatgcaacagactttaaccagccgaccgcaatcaagagtggattgccaaggccattattcttatcactatgatctacttgattataaagatacaaaccatgggcaggggaagaaacaacgaatgattcagccacgcaagcgacagatgcacggtatcctagacttgattggagagATTGGAAATCATACAT---------TGTACACGCATACAATTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTAGACGGGAACCTAACTTACCAAAAG-----ACATAGAATTTGGATTAGATAGGCCGAACAGAACAT-AAAGATCCCTTACCAATTATATAGACAACTTAAAGGAGCGACTGAGGAAATCCTACCAGTTAACATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACATCTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGAGA-T-AGAGTGCTAGT--CA-AAGTAGTAGCCT----------TAGATGGAC----GTCACAAGT-TAGCGGAT-AAGTG-GGAA----------GAG-GATCCGTATATTGTGATTAGCCAGCCAAATCA-AGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGAAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAAAACGATATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAGTCGGGGA-TGCAGATTTCCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACTGG--CGATCA-TGGAACCTGTGCC-ACAAGCAGATGA-TCCAG-----AAACTGTA-CCAGCAGC-TGAGGCTGAATCAGAGACAGga
gi|5 : CAGGACAACCATTAGCCCAGCTAGA--G--TT---AAG--A------GAACTTTG-----GAGAA--TTCAGAGAGATGACCC--ACTTATTCGACTCTGGATAAACGCAGTGAAGGCAAGA---ACACT-TCCAGTGAAACACAAAAT-TCCAAA----AGGCAAAAATCACATGATCATGTGTAGGAATTTCAACAATTTGAAATCAATT--AGAGGGTATT------ATAC---AGAGAAGT---TAAGAGTCCA-GACAA-CATTATCAATCAACTCGTATTGCC---A--A-----AGCAACTTATACCT-AC--TGCTTTAACAGGAT---TACACAACAATATGGGCCACCCAGGAAAAGA---------TTTTC--T-TTGTTAAGAGATAGATTCTTTTGGACAGGAATGAATTTAGACGTAGAAAATTGGGTCAAAAATTGCGACAGATA----CTTGCG---AAGAAAATCGTCATGTCA-G---AAGGCACCAATT--GTGAATATTA-CA-TACTCATATCCCTTAGAACTAGTTTGCATAGATTATTTAACTTTAGAGCCTTGCAAAGGAGGGAT-TGCCAACATTTTAGTTTTGACAGATCATTATACAAGAT--ATGCTCAGGCTATTCCGAC-AAAAGTTC-ACCGCTAAGACAGATAACAA-----TCCCCTAACATACGTTTTGTC
gi|6 : tttcCAAGTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAGAAGT---AAA-AGTGGATGACCA-GATCATCAATCAACTTGCTGTACCTTCA--AG-TTTAGTAATTCATG--T-AT--TG--------AGATCCTTACACAACAACACAGAACATCCTGGAAGAGA--GAAAAC--ATTAGGT-TTAATCTGAGATAGATTCTTTTGGCCTGGACAGCACAAAGATGTAGAAAATTGGATTAGAGAAGGTAGGAGATGTATTCTTAGG---AAAACA-CCAGCATAAGA-C---AAAGTAGAACTT--AACAACATCATCA-C-CTCACAACCTCTTCAATTGGTTTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAAGGA-GGATATGAAAATGTTCTCGTTATAACCGATTACTTTACACGGTAAATGCTATCGCCATACCAACTAGAAACACGACa
gi|8 : GATGTCCCTTAGTATTTGTGTTGCCTGAAACTGCGAATCAAGGATTGCAGATTTTCCAA-AGTT
gi|8 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcGAGACT-GACCGATCACTGGAACCTGCGCCAACAAGCAGAAGATTCCAGACACTAAACTGAACCCAGCAGCTTGATGCTGAAttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttagagactgaccgatcactggaacctgcgccaacaagcagaagattccagacactaaactgaacccagcagcttgatgctgaa
gi|9 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcgatgtcccttagtatttgtgttgcctgaaactgcgaatcaaggattgcagattttccaaagttttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttaTCAG-AACTTCAAGAAACTCAGGAT--TGGCA-ACGACATT---CTAGTACGTGAGACAAGTAAAGAA-GATGGAGAATTACGA-CACCAGT----TTATAGT-TCTTAGGGAG-TTTC----ACCATG--TTATCTTA--------CAATACCTCCATA-TGACATGGGTCACCCCGGACGAGATAA--AAC-TGT--GGCACTAGTAAGAGAGAGATTCTATTGGCCTAAGATGCACTCGGATATTTCTAACTGGATTGACCAATGTGAGAGGTGCA---TCAAGTTCAAGACG-CC--CACAA-A-CCAGAAAGCAAAGCTC--GTCAACATTACTA-C-TTC-CAACCATTAGAAATGGTCTGCATGGATT
blockSeqs : G G CGAC G . . A C TGG C GAATAAT AT A T T A AACG TATATGATTA A T T A CATGA G GC G ATACTAG GTG AAA G T C G A A GGG C C A CC T CT CTTTAACA T G G A TAAAACT G A A AA T AT T TTC A TA T CCAG GA TGGT A CCC C A A T G AA A G A ATA AGT . A . A A T A TAT G CCTT C TTT ATAG T TC T GATTTGTGTA CGTC C T T A CATAGTTTATGAGT A G AA T T C T T A C T AA T ACTGA T TA A T T C T C A A A T T C T C TTCT G AC C A T T ACACT C T .
blockSeqs : G C ATCA AC A G . . . AATATAATGG A A T T . A . . CTAG AG . . T . T T T A . G G . . . . C T A T GAGCAC A . C TC A CA T . . AG G TT AA AA C TAC A T T G . . G . A . . . A . . C A . . G . C . TG G . . A . . C . . GAA A A CA A . . . A G . . . T . T . . T . C A . . . . . C . . . . . . A . . .
blockSeqs : . A . . T . . . GGCAAGA . A A A . G . . CTA . . . T . T T T T . G C . . . . C T A A GGAAAC C . T AA A CA T . . AT G C CC AA T CA A T T A . . G . . . . T . . . . A . TA C . . . . . A . . GAG G T GA C . . . T A . . . . . . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . G A . . . . A . . . G . T A T A . G T . . . . A C A T GAAAAC A . A CT A AT . . . GT C C GA GT T CC A C A A . . . A . . . . . A . . GA . T T C . . . T . . . . . .
blockSeqs : . . . . . . T T A . . A . . . . . . . C T . . G AA A CA . . . AG G G AA AA C CT A T T .
blockSeqs : A . . AT . . . . C C GT . T . A A
blockSeqCons : CTAG*** GAAAAC****
originalCons : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGA--G--AAC-TATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT---------ATCGATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
finalCons : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTAT-CG-CCCTGGATA----CAGTGCANATATGAT-GATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAGACACCA-----TCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATTCTAG---TAC---AGAGAAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGAGAAAAC----ATTAGGT-TTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAGACA-CCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCCT---------ATCGATGGAC----GTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGAC-ATT-CCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAACAAGAGGCTTTCGATACTCTTCGATAACATTTGATATCACCACCTATACTTGGATACCCGAACATGACGATTCCATACCGATGTTAGTACCAGAGGACTTGGAGCCATTCTTTACCAAGACCAGGATGGGATGAAGCGAGTCATTGGAAACACTAGCAGAGGACTTACACCAGCTGAAAGAAATTATCCTGCCCATAAGCTAGAGTTTGTAGCTTTGAAATGGTCCATCACTGAGAAAGTCAAAGATTACTTATATGGATAAAAGTTTACTGCCATTAGAGACAACAACCCGTTGACCTACATTCTATCCAATGCAAAATTAGACTCAACAGGCCATAGATGGGTTGCAGCATTATCTGCCTATGATTTCGACATCAAATACAGACCAGGCAAGAACAATGCAGCAGCAGATGCACTATCTAGATT
Unaligned ( gi|12 ): CCTTTACCAGGAACAAAGTGGTACAAAAAGAGTCATACGCGTATTGTCAGTAGAGGTCTTTGACCAGTGAAAAGCAACCTATCCTGCGCACAAACTTGAATTCTTGGCACTCAAGTGGGCTGTGTGGACAAATCTACTATGTATCTCTACGCGAAATCAGTTTCACGTCTGTAACAAGATAATAATCCTTTGACGTATGTCATATCCAAGCCAAGTTGGATGCTACAAGCCAGCAGATGGGTGGCGGCATTA
Unaligned ( gi|14 ): TAGCGCTGAAATGGACTATCACCGAGAAATTCTCAGATAATCTTCAAGGGGAAAATCACAGTTTACACCGACAACAATCCTCTGACCTATGTGTTGAGCACTGCTAAATTGGATTCAACAGGACATCGTTGGATTTCCCATTTAGCGAATTATAACTCCAAGGTCATTTACAGATCTGGGAAGCTCAACATAGATGCAGACGGATTATCTAG
Unaligned ( gi|19 ): CCCATAAGCTAGAGTTTTTAGCTTTGAAATGTTCCATCACTGAGAAATTCAAGGATCAAAGTTTACTGTCATTACAGACAACAACCCGTTAACCTACA
Unaligned ( gi|22 ): GGGTTGATGAGTGTGAGAGATGCATGAAGTTCAAGACTTCTAATCACCAGAAAGTATGATCGGTTGATATTACCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222 1 4444444444 33333 333333333 1111 44444444444 22222 11 1111111 111 111 111 22222222 111 11111 1111 1 111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222 1 1 1 111 2222 111 1111 11 44444444444 1111 33333333333333 11 22222 11 1 111 1 1 1 1 2222 1 11 1 1 1 22222 1 1 1
lowQualScore : 5 1 3333 1 5 0000000000 1 1 0 22222 2 111111111 33 0 3 2 0 8 8 7777 55555555555 0 3 1 1 0 0 1 00000 3 11 8 8888888 111 99 111 6 3 6 3 1 0 000 6 2 1 99 6 99 44444444 1 1 1 7 6 0 1 22 1 11 0 0 0 0 3 000 5 66 0 4 11111 0 22 8888 6 1111 1 1 1 1 8 0 99 0 3 0 3 0 777 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 999 55555 1 3 3 1 1 0 777 0 2 1111 1 777 5555 1 11 8 33333333333 0 7777 0 8 1 8 8 88888888888888 6 1 11 1 0 8 8 88 1 3 8 8 11 3 55555 3 11 8 3 0 2 777 3 1 1 1 0 0 0 0 2 8888 0 33 0 0 0 1 55555 0 0 0 5
lowQualScore : . . .... . . .......... . . . ..... . ......... .. . . . . . . .... ........... . . . . . . . ..... . .. . ....... ... .. ... . . . . . . ... . . . .. . .. ........ . . . . . . . .. . .. . . . . . ... . .. . . ..... . .. .... . .... . . . . . . .. . . . . . ... . ..................................................................................................................................................... ... ..... . . . . . . ... . . .... . ... .... . .. . ........... . .... . . . . . .............. . . .. . . . . .. . . . . .. . ..... . .. . . . . ... . . . . . . . . . .... . .. . . . . ..... . . . .
lowQualScore : 0 0 0000 0 5 5555555555 0 0 7 00000 5 000000000 55 8 2 5 8 0 0 0000 88888888888 8 2 2 0 8 8 4 00000 2 00 0 8888888 777 22 777 7 2 7 2 0 1 222 7 5 0 22 7 22 22222222 0 7 0 2 7 3 0 00 7 77 3 6 3 1 2 000 7 99 1 3 66666 1 44 0000 0 3333 4 0 0 4 0 8 22 8 2 0 2 2 555 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333 00000 0 3 3 0 0 0 555 8 5 2222 0 555 0000 0 00 0 44444444444 8 0000 8 0 0 0 0 44444444444444 4 0 88 0 8 0 0 88 4 8 0 0 00 2 00000 2 00 0 2 0 5 222 7 0 0 0 0 0 0 0 5 3333 0 88 0 0 0 0 00000 0 0 2 0
consensus : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTA-TCG-CCCTGGATA----CAGTGCANATATGAT-G-ATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAG--AAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGAGAAAAC-ATTAGGTTTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCC---------TATCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
Reference ( family-4644 ) : NNACCAAGGCANTGCGGAGATGCGACTCACTATCTCGTCANACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGNCCATTTCCNTCTCGGAACAACCATTTGCTCAGTTACA--G--TCCACAAG--A--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATCCTGAATTA-TCG-CCCTGGATA----CAGTGCANATATGAT-G-ATACAAGCCAAAGAAAAGCAANTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTCGACAAACTGAAGCTGATG--A-ACGACATT---CTAGTAC---AGAG--AAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTNGTACCTTCN--AG-TTTAGTAANTCATG--T-AT--TG--------AGATCCTTACACAACAACATGGGACATCCNGGAAGAGAGAAAAC-ATTAGGTTTANTNNGAGATAGATTCTTCTGGCCTGGACNGTACAAGGATGTAGAAAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-C---AAAGCANAACTT--GNCAACATCATCA-C-CTCACAACCNCTNGAATTGGTCTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAGGGA-GGATATGAAAATGTTCTCGTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTCGTACCCTACGGACTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAAATCATACATAGCTCCCATTGTACACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATNAGATAGGCCGAACGAAAGAT-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGGAGCGANTGAGGAAATCCTACCAGTTANCATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGNAGAG---GGAGA-T-GGAGTGCTNGT--CA-AAGTAGTAGCC---------TATCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAG-GATCCGTANATTGTNATTAANCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGGAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCNAAACCCAGAANGGGACTAAGGANAAGGGAAGGCAGTGACACTCGGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAGGA-TGCAGATTTTCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACCTGCGCC-ACAAGCAGATGA-TCCNG-----AAACTGAA-CCAGCAGC-TGACGCTGAATCAGAGACAGACGATACGAGTTCACCTGTTACTGCTCCACGCCAGGGCTAGAAGAGAGCCAGAA
gi|1 : ACCAAG-CACTGCGGAGATG-G--TCACTATTTCGTCATACTCAATTAGCACCATCAACAAGTCTCAAGAAACACCCTGTATAGAGCCCATTTCCATCTCGGAACAACCATTTGCTCAGTTACA--ACATCCACAAG--AAATAATGAAGATTGACACAGAGAAAGCGCAGCAAGATGATCCTGAATTA-TCG-ACCTGGATA----CAGTGCA--------------CAAGCCAAAGAAGAGCAAGTTATCTGGATCTTTTGTAG-----ACATCATTATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAG--AAGT---GAA-AGTGGATGATCA-GATCATCAATCAACTTGTTGTACCTTCC--AG-TTTAGTAGATCATG--T-AT--TA--------AGATCCTTACACAACAATATGGGACATCCTGGAATAGAGAA--CTATTAGGTTTACTTCGAGATATATTTTTCTGGTCTGGACAGTACAAAGATGTTGAGAATTGGATTAAAGAATGTAGGAGATGTATTCTTAGG---AAG-ACACCAGCACAAGA-C---AAAGCATAACTT--AACAACATAATCA-C-TTCACAACCCCTTAAATTGATCTGCATGGACTTCCTGTGTCTAGAGAGAAGTAAGGGA-AGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCCATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAACCTTCTTCAAT---CATTTTGTCGTACACTACGAATTTCCCAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATCTATGGAACAATCTAGAAAATCAGACTGGAATTCATACATAGCTCCCATTGTAAACGCATACAATTGCATGAAGCAAGAGACTACCAAATTTTCCCCATATCATATTATGTTTGGACGGGAACATAACTTACCAATAGTATAGACATAGAATTTGGATTAGATAGACCAAACGAAAGATTAA-GATCTCTTACCAAGTACATAAAAATCCTAAAGGAGTGATTGAGGAAATCCTACCAGTTAGCATCAGAAGCTACACGTAAAGCACAGGAAAGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGATA-C-CGAGTGCTAAT--TA-AAGTAGTAGCC---------T-TCGATGGA----CGTCACAAGT-TAGCGGAA-AAATG-GGAA----------TGA-AACCCGTACATTGTGATGAAACAGCCAAATCA-AAA-CA-TTCAAGTTTACA-AT-ATACAGAGG--GAAGATGGTGTTGGAAGAG-----TGAGGATTCTGTACAGAAAC--CTACTTTTACCAAT-TGGACATG-TTGAAGGAAATTTCAACCAAAAATGAATTCCAAACCAGTTCCACCAATGCGGTCAAAACCTAAACCTAGAATGAGACTAAGGATAAGGGAAGACAGTGACATTCGGTCAACTGTAGAAAGCCTAATAGACTCGGATGAGGAGGAAGCAATCTTCATTGAGATTCCCAGAGGAACACGACATCATCACTCTGATGTCCCT-AGTATT-ATGTTGCCTGAAACCG-GAATCGAGGA-TGCAGATTTTCCATCAGTTGAGGACGCTCATCATGTTGGATAACATCTAGAAGATGATGCAG----AAGAGGAGAAT-G--CGATCA-TGGAACCTGTGCC-ACAAGCATATGA-TCCTG-----AAACTGAA-CCAGCAGC-TTACGCTGAATCAGAGACCGACGATACGAGTTCACCTGTTACTGCTCCACGCTAGGGCTAGAAGAGAGCCAGAA
gi|10 : gaGCACAGAAAC--TTACTTTTACCAAT-TGGACA------------------ACCAATGATGGATCCCAAACCAGTTCCACCA
gi|11 : AGTGCTTGCTCCA-ACGTAGTAGCCTGATTTGTGTATCGA-GGACCGTCATCACGAGTCTTGCAGACTAAGTGAGGAACATAGTTTATGAGTGATCCATCGATTGTT-TTAATC--------CATGGACCATTTCCTGTTTACA-AATGTACAAAGGAAGAAGAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggaatcgaagatgcagattttccaactgttgaggatgctcatcatgttggagaacatctagaagatg
gi|11 : TTTTACCGATATGGACATGTTTGCAG--TATattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaattttaccgatatggacatgtttgcagtat
gi|13 : agtgcttgctccaacgtagtagcctgatttgtgtatcgaggaccgtcatcacgagtcttgcagactaagtgaggaacatagtttatgagtgatccatcgattgttttaatccatggaccatttcctgtttacaaatgtacaaaggaagaagaattaggttagtgtttattaataacgaaaatgtgtagcagatatcttgcaccacacaaccattcttctacgttgtataaaGACAGAAGACCAACTATGACCATGAAGGCTATCAGAGCA-TTGCCTTTACTTGCAGTGTTTGGTGAATAGGGGT-TTGGT--TATAAGTCGTCGCT---------TAATGATGAA----AA-CATAAGA-TCGCTGAC-AAGTG-GGAA----------GA--CATCC-TAACTTGTAAGTCAACAACCAAATAA-GAA-CA--TACAGTTT-CACAA-GTTCGGAGA--GAGGATGGTA--GGGAGCGACTGATAGGTAT--TGCATCGTAATTATTACTGT--CCGAT-CGG
gi|15 : GATCGTTTCTTCTGGCCTGGGATGTCCAAAGATGTAGACCAATGGATTACAGGATGTAAGAGCTGTATTCTGAGG---AAG-TCTCCTAC-CAATATT---AGGGCAC--CTTTGGTCAATATCAACA-C-ATCCGAAGCACTAG-ATTAGTTTGCCTTGATTTCCTTTCTTTAGA
gi|16 : AATCCACCTGTAGTACTATCA--AGCTTTGCTAGATT-TG--T-AT--TG--------AGATTAGTGTACAGCAATTTAGGATGTCCAGGAAGAGAGAGCAC-ATTGGGCTTTATAAAAGGTCG------TTGGCCAGCACAATACAGGGATGTGGAAAATTAGATTa
gi|17 : gATAACCGATCACTTTACACGGT--TTGCTATTGCTATACCAACTAGAAACACAACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAAC---CATTTTGTTGTACCCTACAGACTTCCCAAACGT
gi|18 : GCAAGATGATCCTGAATTA-TCG-CCCTGGATA----AAGTGCATATATGATTA-ATACAAGCCAAAGAATAGCAATTTATCTGGATCTTATGCAG-----ACACCATCATattcattctgatcaaggg
gi|2 : TATTCTTAGG---AAA-ACACCAGCATAAGA-C---A--GCAGAACTT--AACAACATCACCA-T--TCACAACCTCTTGAATTGGGCCGCATGAATTTCCTGTGTTTAGAGAGAAGTACTGGA-GGATATGAAAATGTTCTCTTTATAACCGATCACTTTACACGGT--TTGCTATCGCTATACCAACTAGAAACACGACAGCTAGAACA-ACAGCAGAAGCCTTCTTCAGC---CATTTTGTTGTACCCTACAGACT
gi|2 : GGATCTATGGAACAATCTAAAAAATCAGACTGGAAATCATACATAGTTCCCATTGTACACGCATACAACTGCATGAAGCAAGAGACTACCAAATTTTCACCATATCATCTTATGTTTGGACGGGAACCCAACTTGTCAATAG-----ACATATAATTTGGATAAGATAGGCTGAACGAAAGAC-AA-GATCTCTTACCAAGTATATAGACAACTTAAAGAAGCGAATGAGGAAATCCTACCAGTTATCATCAGAAGTTACACGTAAAGCACAGGAGCGACAAAAAGACAACTATGATC-TCAAGTC---CAGAGGAGTTG----TACTGGCAGAT---GGAGA-T-GGAGTGCTCGT--CA-AAGTAGTAGCC---------T-TCGATGGA----CGTCACAAGT-TAGCGGAC-AAGTG-GGAA----------GAA-GACCCATATATTGTCATTAGCCAGCCAAATCA-AGA-TA-TTCCTGTTTGCA-AA-GTACAGAGG--GAAGATGGTGTTGGAAAAG-----TGAGGATTCTGCACAGAAAC--TTACTTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|2 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaGTCAACTGCAGAAACCCTATTAGACTCGGATGAGAAGGAAGCAGTCTTCATTGAGATTCCTAGAGGAACACGACATCATCACTCTCATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAATCGAAGA-TGCAGATTTTCCAACTGTTAAGGATGCTCATCATGTTGGAGAACATTTAGAAGATGATGCAG----AAGAGGAGACT-G--CGATCA-TGGAACTTGCGCC-ACAAACAGATGA-TCCTG-----AAACTGAA-CAAGCAGC-TGACGCTGAATCAGAGATAGATGATACGAGTTCACCTGTTACTGCTTCA-ACCAGGGCTAGAAGAGAGCCAGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacgtcaactgcagaaaccctattagactcggatgagaaggaagcagtcttcattgagattcctagaggaacacgacatcatcactctcatgttcctagtattgtgttgcctgaaactggaatcgaagatgcagattttccaactgttaaggatgctcatcatgttggagaacatttagaagatgatgcagaagaggagactgcgatcatggaacttgcgccacaaacagatgatcctgaaactgaacaagcagctgacgctgaatcagagatagatgatacgagttcacctgttactgcttcaaccagggctagaagagagccagaa
gi|20 : tattcttaggaaaacaccagcataagacagcagaacttaacaacatcaccattcacaacctcttgaattgggccgcatgaatttcctgtgtttagagagaagtactggaggatatgaaaatgttctctttataaccgatcactttacacggtttgctatcgctataccaactagaaacacgacagctagaacaacagcagaagccttcttcagccattttgttgtaccctacagactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgataaacatggaggatctatggaacaatctaaaaaatcagactggaaatcatacatagttcccattgtacacgcatacaactgcatgaagcaagagactaccaaattttcaccatatcatcttatgtttggacgggaacccaacttgtcaatagacatataatttggataagataggctgaacgaaagacaagatctcttaccaagtatatagacaacttaaagaagcgaatgaggaaatcctaccagttatcatcagaagttacacgtaaagcacaggagcgacaaaaagacaactatgatctcaagtccagaggagttgtactggcagatggagatggagtgctcgtcaaagtagtagccttcgatggacgtcacaagttagcggacaagtgggaagaagacccatatattgtcattagccagccaaatcaagatattcctgtttgcaaagtacagagggaagatggtgttggaaaagtgaggattctgcacagaaacttacttttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccacTCTTAGG---AAA-TCACCATCGCAAGA-C---AAAGCAAAACTT--AACAACATCATCACC-CCCACAGCCTCTTGAATTGGTCTGCATGGA
gi|21 : TAGAGAGAAGTAAGGGT-GGATATGAAAATGTTCTCGTTATTACCGATCATTTTACACGTT--TTGCTATCGCCATACCAA
gi|23 : CCACAAG--A--TCA--GAGATTGATATACGAAAAGCTCAACAAGATGATCCTGAACTA-TTT-CCATGGATA----CAGT
gi|24 : ATCTTATGTTTGGACGGGAACCCAACTTGCCAATAG-----ACATAGAATTTGGATAAGACAGGC
gi|25 : TAC---AGAG--AAGT---GAA-AGTGAATGATCA-GAGCATCAATCAACATGTTGTACCTTC
gi|3 : ACCAAGGCAGTGCGGAGATGCGACTTACTATCTCATCAGATTCAATTAGCACCATCAACAAA-CTC----------CTGTATAGAAACCATTTCCCTCTCAGAACAACCACTTGCTTACTTACATGG--TCCATATGGAA--TAATGAAGATTGACATAGAGAAAGCGCAGCAAGATGATATTGAATTA-TTG-CCCTG-ATA----CAGTGCAAATATAAT-GGATACAAGCCGAAGAAAAGCAATCTATCTGGATCTTTTGCAT-----ACACCATATTGTTCAGGAACTGCGACAAACTGAAGCTGATG--A-ACAACATTATACTAGTAT---AGAGAGAAGT---GAA-AGTGGATGATCA-GATCTTGAATCAACTTGTTGCACCTTCT--GG-TTTAGTAAGTCATA--T-AT--TG--------AGATCCTTAAATAACAACATGGGACATCCTGGAAGAGAGGAAAC-ATTAGGTTTACTTCGAGATAGATTCTTCTAGCCTGAACAGTGCAAGGACGTAGAAAATTGGATTTGAGAATGTAGGAGATGTA
gi|4 : atgaatggcgagtcaattggatatgatacgccagcaggaggaagctatacgaccaggctgaagaacaattcatccatgccccagataaggacgctttagcgaagattgttttaggcagtttgaaataggtacatcacatgaggaaatttcgggcaagagcagactactatgttataggatcaacacctgataattgccatcaccaagacaaaccaatccatagggcctacatcgactattcatgccaaattgagccatgcaacagactttaaccagccgaccgcaatcaagagtggattgccaaggccattattcttatcactatgatctacttgattataaagatacaaaccatgggcaggggaagaaacaacgaatgattcagccacgcaagcgacagatgcacggtatcctagacttgattggagagATTGGAAATCATACAT---------TGTACACGCATACAATTGCATGAAGCAAGGGACTACCAAATTTTCACCATATCATCTTATGTTTAGACGGGAACCTAACTTACCAAAAG-----ACATAGAATTTGGATTAGATAGGCCGAACAGAACAT-AAAGATCCCTTACCAATTATATAGACAACTTAAAGGAGCGACTGAGGAAATCCTACCAGTTAACATCAGAAGCTACACGTAAAGCACAGGAGCGACAAAAAGACATCTATGATC-TCAAGTC---CAGAGAAGTTG----TACTGGAAGAG---GGAGA-T-AGAGTGCTAGT--CA-AAGTAGTAGCC---------T-TAGATGGA----CGTCACAAGT-TAGCGGAT-AAGTG-GGAA----------GAG-GATCCGTATATTGTGATTAGCCAGCCAAATCA-AGA-CA-TTCCTGTTTACA-AA-GTACAGAGG--GAAGATGGTGTTGAAAGAG-----TGGGGATTCTGCACAGAAAC--TTACTTTTACCGAT-TGGACATG-TTGCAG--AATTCCAACCAAAGATGGATCCCAAACCAGTTCCACCAATGCGGCCAAAACCAAAACCCAGAAAGGGACTAAGGAAAAGGGAAGGCAGTGACACTCAGTCAACTGTAGAAACCCTATTAGACTCGGATGAGGAGGAAGCAGTCTTCATTGAGATTCCCAGAGGAAAACGATATCATCACCCTGATGTTCCT-AGTATT-GTGTTGCCTGAAACTG-GAGTCGGGGA-TGCAGATTTCCCAACAGTTGAGGACGCTCATCATGTTGGAGAACATCTAGAAGATGATGCAGTTCTAAGAGGAGACTGG--CGATCA-TGGAACCTGTGCC-ACAAGCAGATGA-TCCAG-----AAACTGTA-CCAGCAGC-TGAGGCTGAATCAGAGACAGga
gi|5 : CAGGACAACCATTAGCCCAGCTAGA--G--T---TAAG--A------GAACTTTG-----GAGAA--TTCAGAGAGATGACCC--ACTTATTCGACTCTGGATAAACGCAGTGAAGGCAAGA----ACAC-TTCCAGTGAAACACAAAAT-TCCAAA----AGGCAAAAATCACATGATCATGTGTAGGAATTTCAACAATTTGAAATCAATT--AGAGGGTATT------ATAC---AGAG--AAGT---TAAGAGTCCA-GACAA-CATTATCAATCAACTCGTATTGC---CA--A-----AGCAACTTATACCT-AC--TGCTTTAACAGGA---TTACACAACAATATGGGCCACCCAGGAAAAG--------ATTTTCTTTGTTAAGAGATAGATTCTTTTGGACAGGAATGAATTTAGACGTAGAAAATTGGGTCAAAAATTGCGACAGATA----CTTGCG---AAGAAAATCGTCATGTCA-G---AAGGCACCAATT--GTGAATATTA-CA-TACTCATATCCCTTAGAACTAGTTTGCATAGATTATTTAACTTTAGAGCCTTGCAAAGGAGGGAT-TGCCAACATTTTAGTTTTGACAGATCATTATACAAGAT--ATGCTCAGGCTATTCCGAC-AAAAGTTC-ACCGCTAAGACAGATAACAA-----TCCCCTAACATACGTTTTGTC
gi|6 : tttcCAAGTTATCTGGATCTTATGCAG-----ACACCATCATGTTCAGGAACTTTGACAAACTGAAGCTGATG--A-ACAACATT---CTA-TAC---AGAG--AAGT---AAA-AGTGGATGACCA-GATCATCAATCAACTTGCTGTACCTTCA--AG-TTTAGTAATTCATG--T-AT--TG--------AGATCCTTACACAACAACACAGAACATCCTGGAAGAGAGAAAAC-ATTAGGTTTAATCTGAGATAGATTCTTTTGGCCTGGACAGCACAAAGATGTAGAAAATTGGATTAGAGAAGGTAGGAGATGTATTCTTAGG---AAA-ACACCAGCATAAGA-C---AAAGTAGAACTT--AACAACATCATCA-C-CTCACAACCTCTTCAATTGGTTTGCATGGATTTCCTGTGTTTAGAGAGAAGTAAAGGA-GGATATGAAAATGTTCTCGTTATAACCGATTACTTTACACGGTAAATGCTATCGCCATACCAACTAGAAACACGACa
gi|8 : GATGTCCCTTAGTATTTGTGTTGCCTGAAACTGCGAATCAAGGATTGCAGATTTTCCAA-AGTT
gi|8 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcGAGACT-GACCGATCACTGGAACCTGCGCCAACAAGCAGAAGATTCCAGACACTAAACTGAACCCAGCAGCTTGATGCTGAAttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttagagactgaccgatcactggaacctgcgccaacaagcagaagattccagacactaaactgaacccagcagcttgatgctgaa
gi|9 : atgctcagtaaaatatacactcataatttacgattccagatgaaggagaagacagaataattttgtatgaagaattcccaagatagtcgatgtcccttagtatttgtgttgcctgaaactgcgaatcaaggattgcagattttccaaagttttgagagaataaagcaatgccatctgatacaggtggtgagaaatacatttacattataagaaaatgaatttgaaattgtcgagtatgggagtttttttttaTCAG-AACTTCAAGAAACTCAGGAT--TGGCA-ACGACATT---CTAGTACGTGAGAC--AAGTAAAGAA-GATGGAGAATTACGA-CACCAGT----TTATAGT-TCTTAGGGAG-TTTC----ACCATG--TTATCTTA--------CAATACCTCCATA-TGACATGGGTCACCCCGGACGAGATAAAAC-TGTGGCACTAGTAAGAGAGAGATTCTATTGGCCTAAGATGCACTCGGATATTTCTAACTGGATTGACCAATGTGAGAGGTGCA---TCAAGTTCAAG-ACGCC--CACAA-A-CCAGAAAGCAAAGCTC--GTCAACATTACTA-C-TTC-CAACCATTAGAAATGGTCTGCATGGATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACAACAAGAGGCTTTCGATACTCTTCGATAACATTTGATATCACCACCTATACTTGGATACCCGAACATGACGATTCCATACCGATGTTAGTACCAGAGGACTTGGAGCCATTCTTTACCAAGACCAGGATGGGATGAAGCGAGTCATTGGAAACACTAGCAGAGGACTTACACCAGCTGAAAGAAATTATCCTGCCCATAAGCTAGAGTTTGTAGCTTTGAAATGGTCCATCACTGAGAAAGTCAAAGATTACTTATATGGATAAAAGTTTACTGCCATTAGAGACAACAACCCGTTGACCTACATTCTATCCAATGCAAAATTAGACTCAACAGGCCATAGATGGGTTGCAGCATTATCTGCCTATGATTTCGACATCAAATACAGACCAGGCAAGAACAATGCAGCAGCAGATGCACTATCTAGATT
Unaligned ( gi|12 ): CCTTTACCAGGAACAAAGTGGTACAAAAAGAGTCATACGCGTATTGTCAGTAGAGGTCTTTGACCAGTGAAAAGCAACCTATCCTGCGCACAAACTTGAATTCTTGGCACTCAAGTGGGCTGTGTGGACAAATCTACTATGTATCTCTACGCGAAATCAGTTTCACGTCTGTAACAAGATAATAATCCTTTGACGTATGTCATATCCAAGCCAAGTTGGATGCTACAAGCCAGCAGATGGGTGGCGGCATTA
Unaligned ( gi|14 ): TAGCGCTGAAATGGACTATCACCGAGAAATTCTCAGATAATCTTCAAGGGGAAAATCACAGTTTACACCGACAACAATCCTCTGACCTATGTGTTGAGCACTGCTAAATTGGATTCAACAGGACATCGTTGGATTTCCCATTTAGCGAATTATAACTCCAAGGTCATTTACAGATCTGGGAAGCTCAACATAGATGCAGACGGATTATCTAG
Unaligned ( gi|19 ): CCCATAAGCTAGAGTTTTTAGCTTTGAAATGTTCCATCACTGAGAAATTCAAGGATCAAAGTTTACTGTCATTACAGACAACAACCCGTTAACCTACA
Unaligned ( gi|22 ): GGGTTGATGAGTGTGAGAGATGCATGAAGTTCAAGACTTCTAATCACCAGAAAGTATGATCGGTTGATATTACCA