lowQualScore : 3333 111 2222222222222222222 333333333333333 11111111 11111 222222222222222222222 2222222222222222 11111 22222 66666666666666666666666666666666666666666 1 33333
lowQualScore : 7 5555 111 3 555 1111111111111111111 6666 2 2 555555555555555 3 33333333 55555 222222222222222222222 7 4444444444444444 44 6 9999 88 55555 1 44444 8 0 8 77 4 3 9999 8 33 33 33 2 888888 444 3 3 555 11111111111111111111111111111111111111111 2 4 4 22222 4 1
lowQualScore : . .... ... . ... ................... .... . . ............... . ........ ..... ..................... . ................ .. . .... .. ..... . ..... . . . .. . . .... . .. .. .. . ...... ... . . ... ......................................... . . . ..... . .
lowQualScore : 9 6666 777 7 444 5555555555555555555 5555 8 2 555555555555555 1 88888888 44444 111111111111111111111 3 5555555555555555 66 7 4444 55 99999 4 11111 0 7 7 55 7 6 8888 5 44 99 99 9 222222 222 1 1 444 33333333333333333333333333333333333333333 5 0 0 44444 0 4
consensus : TCGTTTATC---GTTTT---TTCT---AT--C------T---------T----CAAGGCACACA-TT--------NTT-CCTT----T---GCAGCATA----NGTT----A----AT-----T----GATTTT-ATN-G-------------GA--TTTAGCGC-CGTA-TTGGCAATAT--TTCAACCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCGGTTTTC-AAGACTTT-TGGAGC--CCCANTGGAATG-AAACAGA--AT--AG-A------TATACAGTACAT-ACCCCAT-TA-GT---A------T--TTTT---GACATT-----TAGT-T--C-G---TTCGTCACCTC-GTT-TCAG-AA-TTTT-CAGTACTTTGATTATT
Reference ( gi|8 ) : TTGTGTATC---GTTTT---TTCT---AT--T------T---------T----CAAGGCACACA-TT--------ATT-CCTT----T---GCAGCATA----AGTT----A----AT-----T----GATTTT-ATT-G-------------GA--TTTAGCGC-CATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAGCTTTT-AAGACCTT-TGGAGC--CACAATGGAATG-AAACAGA--AT--AG-A------TATACAGTACAT-ATCCCAT-TA-GT---A------T--TTGTGGGGGCATT-----TGGT-T--T-G---TTGGTCACCTT-GTT-TCAG-ACCTTTT-CAGTACTTTGATTATT
gi|7 : TTGTGTATC---GTTTT---TTCT---AT--T------T---------T----CAAGGCACACA-TT--------ATT-CCTT----T---GCAGCATA----AGTT----A----AT-----T----GATTTT-ATT-G-------------GA--TTTAGCGC-CATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAGCTTTT-AAGACCTT-TGGAGC--CACAATGGAATG-AAACAGA--AT--AG-A------TATACAGTACATAATCCCAT-TA-GT---A------T--TTGTGGGGGCATT-----TGGT-T--T-G---TTGGTCACCTT-GTT-TCAG-ACCTTTT-CAGTACTTTGATTATT
gi|5 : TTGTTTATT----TCTT---TTTT---AT--C------T---------T----CAAGGCACA-A-TT--------GTTTCCTT----T---GCAACATG----AGTT----A----AT-----TAATAGATTTT-ATA-G-------------GA--TTTAGCTC-CGTA-TTGAAAATATATTTCAACCCTATTTCGGTAGACATTCCATGTACCTGGAATATTAACAGTTTTC-AAGACTTT-TGGATC--CCCACTCGAATG-AAATAGA--AT--AT-A------TATACAGTACAT-ACTCCAT-TA-GT---A------T--ATAT----ATATTTTTAATAGT-TAGT-GTCATTTGTCACCAC-GTT-TCAG-AAGTTTT--AGTACTTTGATT
gi|3 : tttgatcaatttcctgTTGTTTATC-------T---TTCT---AT--C------T---------T----C----------------------TT-CCTT----T---GCAGCATA------------------------------------------------------------TAGCGC-CATA-TTGGCAATAT--TTTAACCCTTTTCCGGTAGAAA----AC-TACATAAAATATTATCAGTTTTC-AATACTTT-TGGAGC--CCCAATGGAATG-AAACAGATGCT--AT-A------TATACAGGGT-T-GTTGTTT-TT-GT---T------T--TTTTTTGGACATT-----TAGTGT--C-G---TTCGT----TT-GAT--CAG-AACTTTC-C-GTACCTTGATTAt
gi|9 : agttcatcagctatatcaacagtggattaaagcttaatactaatccaaactgtaactctgtttcaatgacagtatgtagattttcaaattcaaattttgataaatttctgTCGTTTATCCATGTTTTAAATT-T---ATCCT------T---------T----CAAG--ACAAA-TT--------CTT-CCT-----------AGCGTA----CGTT----A----ATCACATT----GATTTTTATTAG-------------GA--TTTAGTGCGTATG-C--GCAAT----------------TCGGTAGACC----AC-TGCTTAAAAT--TATCGGGTTTTCAAGACTTT-TGGAGCT-CCCATTGGAATA-AAACAGA--TT--AG-A------TATACAGTA-AT-ACCCCAT-TA-AT---ATCC---T--TTTT--AAACATT-----TAGT-GA-C-G---TTCGTCACCTTCGTT-TCAG-AA--TTT-AAGTACTTTGATTTTT
gi|14 : ttgTCGTTTATCCATGTTTTAAATT-T---ATCCT------T---------T----CAAG--ACAAA-TT--------CTT-CCT-----------AGCGTA----CGTT----A----ATCACATT----GATTTTTATTAG-------------GA--TTTAGTGCGTATG-C--GCAAT----------------TCGGTAGACC----AC-TGCTTAAAATAT---CGGTTTTC-AAGACTTT-TGGAGC--CCCATTGGAATA-AAACAGA--AT--AG-A------TATACAGTACAT-ACCCCAT-TA-AT---A------T--
gi|1 : ttgTTGTTTTTC----TTTT---ATC----AT--C------T---------T----CAAGGCAC-CA-----------GTT-CTTT----CCAAACAGCATA----GGTT----cctttttaacatttagt
gi|4 : aatcataatgaattttcacaccaatctataactttctttcaatgacggcatgtagttttcaaacttagattttgatatatttcctcTGGATC----TTAT---TCCT---AT--T------TGGTGCGCCTT----CAAGGC-CACA-TTT-------CTT-CCCT----A---GAAGCATA----GCTT----G----AT-----T----CGTTGT--TT-G-------------GGGGTTTAATAC-CAT---T--CAATAT--TT------------GTTA--------AC-TATATAAA-TATGATCGGTTT-----GA------GGAG----------AAAT--AAACAGA--AT--AGGA------TATATAG----------CTT-CA-GT---A------TCTTTGTGA---CATT-----TTGTAT--C-G---TTTGTCTCCTC-GTT-TC------------AGTACTTTGATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagcataggaatataaacagaattcagaatatgcgttttgcattagtatctttgtggcaatgtgtattgttctacacctcgcttcagtactttcagtactttgatagtacataaagatttaattatgtataaatgaaattagtatcatattaattga
gi|6 : tcctcaattatatgacagtgaagctaattgctaatgcaaactgtgactctacttcaatggcagtatgtgaatttttcaaaatTC---TTTTT---TTTT---AC--C------T---------T----CAAAGCAC-CA-----------AAT-CTTC----T---GCAGCAactaattgctctgactaaaaattgtatttacata
gi|2 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttcttTCTT---TTTT---AT--C------G---------T----CAGGGCCCA-A-TTTC------GTC-CTTT----T---GCAGCATATGGTAATT----A----AT-----T----GATTTT-ATA-G-------------CA--TT-AGCGT-CGTA-TTGGTAATAT--TTTAGCCCTTTTACGATAGACA----GC-TATATAAAATATGATCAA-TTTC-GAGACTTT-TGGAGT--TTCATTGGACTT-GAACAGA--AT--TG-ATACATGTATACAGTATAT-ACCCAAT-TA-TT---ATC----T--TTTT---GACATT-----TTGTAT--C-C---TTCGTAATCTC-GTA-ATAGTAC--TTT-CAGTACTTTGATTgcacatggattaaacaatagctacacagtgcatagtatcatccttcttgtgtcaatactttcagtactttgattaacctttaagtgcatt
gi|13 : agtttatcagctatgtaaccggtgtatatctaaactgtagctctgtttcaatgacagtatgcaatgtatagattttcaatctaaattttgataagttttctgttgttaaTTTT---TTTT---AT--C------T---------TTGAACAGGGCCCAAG-TTT-------CTT-CGTT----T---GTAGCAAA----CGTTTATTA----AT-----T----GATGTT-ATA-G-------------GA---TTAGCGC-TGTA-TTGGC-ATAT--Ttc
gi|11 : gcagttttatttatttataaacggtttaataaatcttaatgttaatccaaactgtaactctgtttcaatgacagtatatagattttcgttttaaaatttgataaatttcctgttgtaatttttttaattattattTTT---TTCT---TT--TTTCACCT---------T----CAAGACAC-CA-TT--------GTT-CCTT----A---GCAACATA----aagatata
gi|23 : aaagagtgtggtgcaatttttacatgcaagggcagttcagttgccagatttactgtgaatttgaaattctgtgcagttgattcacatgcaccggtatacgacagtaaagatacatgtatacacgaatcgagacagtaatgttgttttattgataatacgtggcttaaagtttgatctgcttcctgttg---TTCTGAAAT--T------T---------T----CAA----CACA-TTTCTTTTGAATT-TCTTCGTTT---GTAGCAAA----CGTT----ATTTAAT-----T----GATGTT-ATA-G-------------GA--TT-AGCGC-CGTA-TTGGCAATAT--gaaatatatagcattattatcaga
gi|10 : ---AT--C------T---------T----CAAAGCAC-CAGTT--------CTT-CCTT----A---GCAGCATA----GGTT----G----AC-----T----G-TTTT-ATT-GATTAATTGTCTAAGG--TTTAGCGT-TATATTTTGCAATAC--TTCAG-TCATTT
gi|17 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatg----GATTTT-ATA-G-------------GA--CTTAGCGC-CGTA-TTGGCAATAT--TTCAACCCTTTTCTGGTAAACA----GC-TACATAAAATAATATAAGTTTTT-AAGACTCT-TGAAGC--CACAATGGAATG-AAACAGA--AT--AG-A------TATACAGTACAT-ATCCCAT-TA-TTATCA------T--TTTT---GGCATT-----Taaagcattaacatctttatgacattttgtaccgttcgtcactccgttacattgatttattttga
gi|15 : A--TTTGGCGC-CGTA-TAAGAAATATAGTTCAATCATTTTTCGGTAGACATTCCACCTACATAAAATATTACCAATTTTC-ATGACTTT-TGGAGC--CCCATTGGAATG-AAACAAA--TT--GA-A------TATACAGTACAT-ACCCCAT-TA-GT---A------T--CTTTTTTGATATT-----TAGTGT--C-G---TTGATCACCTC-GTT-CAAG-AACTTTCACAGAACTTTGATTca
gi|21 : TA-TTTGCTATAT--TTAAATCCTTTTCCATTAGACA----AC-TAAATAAAATATTATTAGTTTAA-AAGACGTT-TGGAGC--TACAACGGAATG-AAACAGA--AT--AG-G------TACACAGTACAT-tt
gi|6 : gAAATCTTCTGCAGCAGCACA-TGGA-TT-AAACA----AT--AG-C------TACACAGTGCAT----------A-GT---A------T-----------CATC-----C-------------TT------CTT-GTG-TCAATAC--TTT-CAGTACTTTGATTA
gi|19 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttctttctttttttttaccttcaaagcaccGC--CCCATTGGAATG-AAACAGA--AT--AG-A------TATATAGTACAT-ATCCCAT-TG-AT---A------T--CTacctttaagtgcatt
gi|20 : CAATTGA-TG-AAACAGA--AT--AA-A-------ATA-AGTACAT-ACCCTATACATGT---ATTTTTTT--TTTTTTTTACATT-----TAGT-T--TCGTT-TTCGTCACTTC-GTTATCAG-AAACTTT-CAGTACTTT-ATTTTTtcttctttttttttttacatcaagtttatagtgtcgttcgtcaccattctcttgcacagagttgtcg
gi|1 : cGGAATATAAACAGA--ATTCAG-A-------ATA---TGCGT-TTTGCAT-TA-GT---A------T--CTTTGTGGCAATG-----TGTA-T--T-G---TTCTACACCTC-GCT-TCAGTAC--TTT-CAGTACTTTGATatt
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TACAAAGAGAAGTTCAGGTGCTTTAATCACCGTGGATTAGAAATTCTGTATTTAATCCTCATGAACGCGACAGTGAAACTAAATGCTAATCCACACTGTAATGCTGTCTCAACAACAGATTGCATAATTTTCAAACTTGGATTTTTATCTTATTCTTGTTGCCCCCCTTTTTCAATGCATTTGTATCGTTCGTCACATCGTTTCATTACTTTGTTGTTTTAGTAATAATTATTGCGATATC
Unaligned ( gi|16 ): GAAGTTAAAATGCTGATTCATCCTGTAATGCTGTTTTATTAACAGTGTCCATGTGCGGATTTTCAGACTTCAGATTTTGATCTCATTCCTGTTAGTTTTCATCATTACCTTTATGCCTAAGGCAGTAACCCTTTCCTTGCCGCATAAGTATTAAACAGAACAGACATACAGTATATAG
Unaligned ( gi|18 ): GACAGTTCACAGCTATATAATCAATAGATTAAAGCTTAATACTAATCCAAACTGTAATTCTAGATTTGTTTCAATGACAGTATGTAGATTTTCAAATTTAAAATTTGACCAATATCCTGCTGTTGATCTTTTTTAATTT
Unaligned ( gi|22 ): AAGGGCAGTTCATTAGCTATATCAACAGGTGATTAAAGCTTAATAGTAATACAAATTGTAACTCCATATCAATGAGAGTAAAATATATGTATATTTTCATATTTAA
Unaligned ( gi|24 ): AGGAGTTTGTGCAATTTGTACATACTGTTCAAGAGCTATTTAGTTGCTATGCTTACCGTGGATTTGAAATTTTATACA
Unaligned ( gi|25 ): AATTCGTCAGCTATTAAACAGTGGAATTATTCTTTATACTAAGTCCAAATAAATGACAGTATGTAGA
Unaligned ( gi|26 ): GTGATGACATTTTGTGTCGTTCTTCACCTCATTTCAGTACTTTGATTTTTA
Unaligned ( gi|27 ): TCATACCATTCTCTTACACAGAGTTGTCGGTC
Unaligned ( gi|28 ): GCACATTCTCTTACACAGAGTTGTCGGTCC
Alignments
lowQualScore : 3333 111 1111 111 111111111 1111111111 1111111111111111 1111 33333333333333333333333333333333333 222 11111
lowQualScore : 2 4444 444 55 99 7777 1 1 2222 222 3 33 4 7777 000000000 7777777777 6 7777777777777777 2 2 0 2 1 77 2 22 0 0 4444 6 1 3 2 2 44 2 2 33 2 777777 2 77777 2 9999999999 444 55555555555555555555555555555555555 8888888 3 555 33 66 777777 44444 44 2
lowQualScore : . .... ... .. .. .... . . .... ... . .. . .... ......... .......... . ................ . . . . . .. . .. . . .... . . . . . .. . . .. . ...... . ..... . .......... ... ................................... ....... . ... .. .. ...... ..... .. .
lowQualScore : 4 0000 000 66 22 1111 8 1 3333 555 1 22 2 1111 999999999 0000000000 2 9999999999999999 9 2 2 7 8 33 9 22 5 4 2222 7 6 3 7 6 44 5 5 44 5 222222 5 11111 7 9999999999 777 11111111111111111111111111111111111 1111111 3 222 99 88 666666 33333 22 1
consensus : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TTC--TT-CCTTTGCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T--TTT--T---G---------ACATT-------TNGTGT-CGTT--CGTCACC--TCGTT--T---CAGA-A-CTTT--CAGTACTTTGATTNTT
Reference ( family-457 ) : TCGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TTN--TT-CCTTTGCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAACCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCGG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T--TTT--T---G---------ACATT-------TAGT-T-CGTT--CGTCACC--TCGTT--T---CAGA-A-TTTT--CAGTACTTTGATTATT
gi|1 : TTGTTTTTC----TTTT---ATC-ATC--TT----CAAGGCAC-CAGTTC--TT-TCCAAACAGCATAGG----TT----G----NN-----N----NNNNNN-NNN-N-------------NN-NNNNNNNNNNNN-NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNN----NN-NNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN-NNNNN-CAGCATAGGAATATAA--ACAG-A-------ATTCAGAATAT-GCGTTTTGCAT-TA-G--------T---A-------------T--CTTTGT---G---------GCAAT-------GTGTAT-TGTT--CTACACC--TCGCT--T---CAGT-A-CTTT--CAGTACTTTGAT
gi|10 : aatcataatgaattttcacaccaatctataactttctttcaatgacggcatgtagttttcaaacttagattttgatatatttcctcATC--TT----CAAAGCAC-CAGTTC--TT-CCTTAGCAGCATAGG----TT----G----AC-----T----G-TTTT-ATT-GATTAATTGTCTAAGG-TTTAGCGTTATATTTTGCAATAC--TTCAGTCATTTagtacataaagatttaattatgtataaatgaaattagtatcatattaattga
gi|10 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgCAT-TA-A--------C---A-------------T--CTT--TAT-G---------ACATT-------TTGTAC-CGTT--CGTCACT--CCGTT--A---CAaaagcattaacatctttatgacattttgtaccgttcgtcactccgttacattgatttattttga
gi|11 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgatcttcaaagcaccagttcttccttagcagcataggttgactgttttattgattaattgtctaaggtttagcgttatattttgcaatacttcagtcatttaaagTTGTTTTTC----TTTT---TTC-ACC--TT----CAAGACAC-CA-TTG--TT-CCTTAGCAACATAttgatttattttga
gi|13 : aaagagtgtggtgcaatttttacatgcaagggcagttcagttgccagatttactgtgaatttgaaattctgtgcagttgattcacatgcaccggtatacgacagtaaagatacatgtatacacgaatcgagacagtaatgttgttttattgataatacgtggcttaaagtttgatctgcttcctgTTATT----TTTT---TTTTATC--TTTGAACAGGGCCCAAG-TTTC-TT-CGTTTGTAGCAAACG----TTTATTA----AT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCTGTA-TTGGC-ATAT--Tgaaatatatagcattattatcaga
gi|14 : gcagttttatttatttataaacggtttaataaatcttaatgttaatccaaactgtaactctgtttcaatgacagtatatagattttcgttttaaaatttgataaatttcctgttgtaatttttttaattaTCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TTC--TT-CCT----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAATAT---CGG-TTTTCAAGACTTTTGGAGC-CCCAT-TGGAAT-AAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-A--------T---ATCC----------T--TTT--T---A---------ACATT-------TAGT-aagatata
gi|15 : ttgA-TTTGGCGCCGTA-TAAGAAATATAGTTCAATCATTTTTCGGTAGACATTCCACCTACATAAAATATTACCAA-TTTTCATGACTTTTGGAGC-CCCAT-TGGAAT-GAAACA-AA--TTGA-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---ATCT----------T--TTT--T---G---------ATATT-------TAGTGT-CGTT--GATCACC--TCGTT--C---AAGA-A-CTTTCACAGAACTTTGATT
gi|16 : GC-CGCAT-AAGTAT-TAAACA-GA--ACAG-A------CATACAGTATAT-Att
gi|17 : gaagttaaaatgctgattcatcctgtaatgctgttttattaacagtgtccatgtgcggattttcagacttcagattttgatctcattcctgttagttttcatcattacctttatgcctaaggcagtaaccctttcctt----GATTTT-ATA-G-------------GA-CTTAGCGCCGTA-TTGGCAATAT--TTCAACCCTTTTCTGGTAAACA----GC-TACATAAAATAATATAAG-TTTTTAAGACTCTTGAAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-T--------TATCA-------------T--TTT--T---G---------GCATT-------Tg
gi|19 : GC-CCCAT-TGGAAT-GAAACA-GA--ATAG-A------TATATAGTACAT-AT----CCCAT-TG-A--------T---ATCTTCTTCTTTTTT--TTT--T---T---------ACATCAAGTTTATAGTGT-CGTT--CGTCACCATTCTCT--TGCACAGA-G-TTGT--Cca
gi|2 : TTGTTAATC------TT---TTTTATC--GT----CAGGGCCCA-A-TTTCGTC-CTTTTGCAGCATATGGTAATT----A----AT-----T----GATTTT-ATA-G-------------CA-TT-AGCGTCGTA-TTGGTAATAT--TTTAGCCCTTTTACGATAGACA----GC-TATATAAAATATGATCAA--TTTCGAGACTTTTGGAGT-TTCAT-TGGACT-TGAACA-GA--ATTG-ATACATGTATACAGTATAT-AC----CCAAT-TA-T--------T---ATC-----------T--TTT--T---G---------ACATT-------TTGTAT-CCTT--CGTAATC--TCGTA--A---TAGT-A-CTTT--CAGTACTTTGATTg
gi|20 : agtttatcagctatgtaaccggtgtatatctaaactgtagctctgtttcaatgacagtatgcaatgtatagattttcaatctaaattttgataagttttctgCCAA-TTGA-T-GAAACA-GA--ATAA-A-------ATA-AGTACAT-AC----CCTATACATG--------T---A-------------T--TTT--T---TTTTTTTTTTACATT-------TAGT-TTCGTTTTCGTCACT--TCGTTA-T---CAGA-AACTTT--CAGTACTTT-ATTTTTtc
gi|21 : GTA-TTTGCTATAT--TTAAATCCTTTTCCATTAGACA----AC-TAAATAAAATATTATTAG-TTTAAAAGACGTTTGGAGC-TACAA-CGGAAT-GAAACA-GA--ATAG-G------TACACAGTACAT-att
gi|23 : -TTC--TT-CGTTTGTAGCAAACG----TT----ATTTAAT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCCGTA-TTGGCAATAT--
gi|26 : ttctgaaattttcaacacatttcttttgaat--T---G---------ACATT-------TTGTGT-CGTT--CTTCACC--TCATT--T---C-------------AGTACTTTGATTTTT
gi|3 : gtgaTTGTTTATC-------T---TTCTATC--TT----C----------------TT-CCTTTGCAGCATA-----------------------------------------------------------TAGCGCCATA-TTGGCAATAT--TTTAACCCTTTTCCGGTAGAAA----AC-TACATAAAATATTATCAG-TTTTCAATACTTTTGGAGC-CCCAA-TGGAAT-GAAACA-GATGCTAT-A------TATACAGGGT-T-GT----TGTTT-TT-G--------T---T-------------T--TTT--TTTGG---------ACATT-------TAGTGT-CGTT--CGT---------TTGAT---CAGA-A-CTTT--CCGTACCTTGATTAa
gi|4 : agttcatcagctatatcaacagtggattaaagcttaatactaatccaaactgtaactctgtttcaatgacagtatgtagattttcaaattcaaattttgataaatttctgC--TT----CAAGGC-CACA-TTTC-TT-CCCTAGAAGCATAGC----TT----G----AT-----T----CGTTGT-TTG-G-------------GGGTTTAATACC--A-TT--CAATAT--TT-------------GT---TA----AC-TATATAAA-TATGATCGG-TTT----GA-----GGAG----------AAAT--AAACA-GA--ATAGGA------TATATAG--------------CTT-CA-G--------T---A-------------T--CTT--T---GTG-------ACATT-------TTGTAT-CGTT--TGTCTCC--TCGTT--T---CAGT-A-CTTT--GA-TACT
gi|5 : tcctcaattatatgacagtgaagctaattgctaatgcaaactgtgactctacttcaatggcagtatgtgaatttttcaaaattggatcttattcctatttggtgcgcTTGTTTATT----TCTT---TTTTATC--TT----CAAGGCACA-A-TTG--TTTCCTTTGCAACATGAG----TT----A----AT-----TAATAGATTTT-ATA-G-------------GA-TTTAGCTCCGTA-TTGAAAATATATTTCAACCCTATTTCGGTAGACATTCCATGTACCTGGAATATTAACAG-TTTTCAAGACTTTTGGATC-CCCAC-TCGAAT-GAAATA-GA--ATAT-A------TATACAGTACAT-AC----TCCAT-TA-GTATATATAT---A-------------T--TTT--T---A---------ATAGT-------TAGTGT-CATT--TGTCACC--ACGTT--T---CAGA-A-GTTT--TAGTACTTTGATTaattgctctgactaaaaattgtatttacata
gi|6 : tttgatcaatttcctgCAAATCTTCTGCAGC-AGCACATGGA-T-TAAACA-----ATAG-C------TACACAGTGCAT-A--------------G--------T---A-------------T----------------------CAT---------------CCTT--C--------TTGTG--T---CAAT-A-CTTT--CAGTACTTTGATTAt
gi|7 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttctttctttttttttaccttcaaagcacTTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TTA--TT-CCTTTGCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACATAAT----CCCAT-TA-G--------T---A-------------T--TTG--TGGGG---------GCATT-------TGGT-T-TGTT--GGTCACC--TTGTT--T---CAGACC-TTTT--CAGTACTTTGATTATTacctttaagtgcatt
gi|8 : TTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TTA--TT-CCTTTGCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-G--------T---A-------------T--TTG--TGGGG---------GCATT-------TGGT-T-TGTT--GGTCACC--TTGTT--T---CAGACC-TTTT--CAGTACTTTGATTATT
gi|9 : TCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TTC--TT-CCT----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAAT--TATCGGGTTTTCAAGACTTTTGGAGCTCCCAT-TGGAAT-AAAACA-GA--TTAG-A------TATACAGTA-AT-AC----CCCAT-TA-A--------T---A-------------TCCTTT--TTA-A---------ACATT-------TAGT-GACGTT--CGTCACCT-TCGTT--T---CAGA-A--TTT--AAGTACTTTGATTTTT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TACAAAGAGAAGTTCAGGTGCTTTAATCACCGTGGATTAGAAATTCTGTATTTAATCCTCATGAACGCGACAGTGAAACTAAATGCTAATCCACACTGTAATGCTGTCTCAACAACAGATTGCATAATTTTCAAACTTGGATTTTTATCTTATTCTTGTTGCCCCCCTTTTTCAATGCATTTGTATCGTTCGTCACATCGTTTCATTACTTTGTTGTTTTAGTAATAATTATTGCGATATC
Unaligned ( gi|18 ): GACAGTTCACAGCTATATAATCAATAGATTAAAGCTTAATACTAATCCAAACTGTAATTCTAGATTTGTTTCAATGACAGTATGTAGATTTTCAAATTTAAAATTTGACCAATATCCTGCTGTTGATCTTTTTTAATTT
Unaligned ( gi|22 ): AAGGGCAGTTCATTAGCTATATCAACAGGTGATTAAAGCTTAATAGTAATACAAATTGTAACTCCATATCAATGAGAGTAAAATATATGTATATTTTCATATTTAA
Unaligned ( gi|24 ): AGGAGTTTGTGCAATTTGTACATACTGTTCAAGAGCTATTTAGTTGCTATGCTTACCGTGGATTTGAAATTTTATACA
Unaligned ( gi|25 ): AATTCGTCAGCTATTAAACAGTGGAATTATTCTTTATACTAAGTCCAAATAAATGACAGTATGTAGA
Unaligned ( gi|27 ): TCATACCATTCTCTTACACAGAGTTGTCGGTC
Unaligned ( gi|28 ): GCACATTCTCTTACACAGAGTTGTCGGTCC
Alignments
lowQualScore : 3333 111 1111 111111111 1111111111 1111111111111111 1111 333333333333333333333333333333333333333
lowQualScore : 2222 222 4 88 6666 0 0 3333 8 666 4 7777 000000000 7777777777 6 7777777777777777 2 2 0 2 1 77 3333 0 0 4444 6 3 2 2 44 2 2 33 2 777777 2 77777 2 9999999999 444 111111111111111111111111111111111111111 7777777 4 5 33 2 66 66666 44 1
lowQualScore : .... ... . .. .... . . .... . ... . .... ......... .......... . ................ . . . . . .. .... . . .... . . . . .. . . .. . ...... . ..... . .......... ... ....................................... ....... . . .. . .. ..... .. .
lowQualScore : 3333 777 9 55 5555 8 3 1111 6 333 2 1111 999999999 0000000000 2 9999999999999999 9 2 2 7 8 33 3333 5 4 2222 7 3 7 6 44 5 5 44 5 222222 5 11111 7 9999999999 777 111111111111111111111111111111111111111 6666666 3 3 77 7 88 33333 22 0
consensus : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T--TTT--T---G---------A---CATT-------TNGTGTCG--TTCGTCACC-TCGTT--TCAG-AAC-TTT--CAGTACTTTGATTTTT
Reference ( family-457 ) : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T--TTT--T---G---------A---CATT-------TNGTGTCG--TTCGTCACC-TCGTT--TCAG-AAC-TTT--CAGTACTTTGATTNTT
gi|1 : TTGTTTTTC----TTTT---ATC-ATC--TT----CAAGGCAC-CAGTT-CTTTCCAA-ACAGCATAGG----TT----G----NN-----N----NNNNNN-NNN-N-------------NN-NNNNNNNNNNNN-NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNN----NN-NNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN-NNNNN-CAGCATAGGAATATAA--ACAG-A-------ATTCAGAATAT-GCGTTTTGCAT-TA-G--------T---A-------------T--CTTTGT---G---------G---CAAT-------GTGTATTG--TTCTACACC-TCGCT--TCAG-TAC-TTT--CAGTACTTTGAT
gi|10 : aatcataatgaattttcacaccaatctataactttctttcaatgacggcatgtagttttcaaacttagattttgatatatttcctcATC--TT----CAAAGCAC-CAGTT-CTTCCTTA-GCAGCATAGG----TT----G----AC-----T----G-TTTT-ATT-GATTAATTGTCTAAGG-TTTAGCGTTATATTTTGCAATAC--TTCAGTCATTTagtacataaagatttaattatgtataaatgaaattagtatcatattaattga
gi|10 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgCAT-TA-A--------C---A-------------T--CTT--TAT-G---------A---CATT-------TTGTACCG--TTCGTCACT-CCGTT--ACAaaagcattaacatctttatgacattttgtaccgttcgtcactccgttacattgatttattttga
gi|11 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgatcttcaaagcaccagttcttccttagcagcataggttgactgttttattgattaattgtctaaggtttagcgttatattttgcaatacttcagtcatttaaagTTGTTTTTC----TTTT---TTC-ACC--TT----CAAGACAC-CA-TT-GTTCCTTA-GCAACATAttgatttattttga
gi|12 : aaagagtgtggtgcaatttttacatgcaagggcagttcagttgccagatttactgtgaatttgaaattctgtgcagttgattcacatgcaccggtatacgacagtaaagatacatgtatacacgaatcgagacagtaatgttgttttattgataatacgtggcttaaagtttgatctgcttcctg-------------T--TTT--T---C---------AATGCATT-------T-GTATCG--TTCGTCACA-TCGTT--TCAT-TAC-TTT--gaaatatatagcattattatcaga
gi|13 : tacaaagagaagttcaggtgctttaatcaccgtggattagaaattctgtatttaatcctcatgaacgcgacagtgaaactaaatgctaatccacactgtaatgctgtctcaacaacagattgcataattttcaaacttggatttttatcttattcttgttgccccccTTATT----TTTT---TTTTATC--TTTGAACAGGGCCCAAG-TTTCTTCGTTT-GTAGCAAACG----TTTATTA----AT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCTGTA-TTGGC-ATAT--Tgttgttttagtaataattattgcgatatc
gi|14 : gcagttttatttatttataaacggtttaataaatcttaatgttaatccaaactgtaactctgtttcaatgacagtatatagattttcgttttaaaatttgataaatttcctgttgtaatttttttaattaTCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TT-CTTCCT-----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAATAT---CGG-TTTTCAAGACTTTTGGAGC-CCCAT-TGGAAT-AAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-A--------T---ATCC----------T--TTT--T---A---------A---CATT-------TAGTaagatata
gi|15 : ttgA-TTTGGCGCCGTA-TAAGAAATATAGTTCAATCATTTTTCGGTAGACATTCCACCTACATAAAATATTACCAA-TTTTCATGACTTTTGGAGC-CCCAT-TGGAAT-GAAACA-AA--TTGA-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---ATCT----------T--TTT--T---G---------A---TATT-------TAGTGTCG--TTGATCACC-TCGTT--CAAG-AAC-TTTCACAGAACTTTGATTT
gi|16 : GC-CGCAT-AAGTAT-TAAACA-GA--ACAG-A------CATACAGTATAT-A
gi|17 : gaagttaaaatgctgattcatcctgtaatgctgttttattaacagtgtccatgtgcggattttcagacttcagattttgatctcattcctgttagttttcatcattacctttatgcctaaggcagtaaccctttcctt----GATTTT-ATA-G-------------GA-CTTAGCGCCGTA-TTGGCAATAT--TTCAACCCTTTTCTGGTAAACA----GC-TACATAAAATAATATAAG-TTTTTAAGACTCTTGAAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-T--------TATCA-------------T--TTT--T---G---------G---CATT-------Tg
gi|19 : GC-CCCAT-TGGAAT-GAAACA-GA--ATAG-A------TATATAGTACAT-AT----CCCAT-TG-A--------T---ATCTTCTTCTTTTTT--TTT--T---T---------A---CATCAAGTTTATAGTGTCG--TTCGTCACC-ca
gi|2 : TTGTTAATC------TT---TTTTATC--GT----CAGGGCCCAAT-TT-CGTCCTTTTGCAGCATATGGTAATT----A----AT-----T----GATTTT-ATA-G-------------CA-TT-AGCGTCGTA-TTGGTAATAT--TTTAGCCCTTTTACGATAGACA----GC-TATATAAAATATGATCAA--TTTCGAGACTTTTGGAGT-TTCAT-TGGACT-TGAACA-GA--ATTG-ATACATGTATACAGTATAT-AC----CCAAT-TA-T--------T---ATC-----------T--TTT--T---G---------A---CATT-------TTGTATCC--TTCGTAATC-TCGTA--ATAG-TAC-TTT--CAGTACTTTGATTattctcttgcacagagttgtcg
gi|20 : agtttatcagctatgtaaccggtgtatatctaaactgtagctctgtttcaatgacagtatgcaatgtatagattttcaatctaaattttgataagttttctgCCAA-TTGA-T-GAAACA-GA--ATAA-A-------ATA-AGTACAT-AC----CCTATACATG--------T---A-------------T--TTT--T---TTTTTTTTTTA---CATT-------TAGTTTCGTTTTCGTCACT-TCGTTA-TCAGAAAC-TTT--CAGTACTTT-ATTTTTtc
gi|21 : GTA-TTTGCTATAT--TTAAATCCTTTTCCATTAGACA----AC-TAAATAAAATATTATTAG-TTTAAAAGACGTTTGGAGC-TACAA-CGGAAT-GAAACA-GA--ATAG-G------TACACAGTACAT-att
gi|23 : -TT-CTTCGTTT-GTAGCAAACG----TT----ATTTAAT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCCGTA-TTGGCAATAT--
gi|26 : ttctgaaattttcaacacatttcttttgaat--T---G---------A---CATT-------TTGTGTCG--TTCTTCACC-TCA-------------TTT--CAGTACTTTGATTTTT
gi|3 : gtgaTTGTTTATC-------T---TTCTATC--TT----C---------------TTCCTTT-GCAGCATA-----------------------------------------------------------TAGCGCCATA-TTGGCAATAT--TTTAACCCTTTTCCGGTAGAAA----AC-TACATAAAATATTATCAG-TTTTCAATACTTTTGGAGC-CCCAA-TGGAAT-GAAACA-GATGCTAT-A------TATACAGGGT-T-GT----TGTTT-TT-G--------T---T-------------T--TTT--TTTGG---------A---CATT-------TAGTGTCG--TTCGT--------TTGATCAG-AAC-TTT--CCGTACCTTGATTa
gi|4 : agttcatcagctatatcaacagtggattaaagcttaatactaatccaaactgtaactctgtttcaatgacagtatgtagattttcaaattcaaattttgataaatttctgC--TT----CAAGGC-CACA-TTTCTTCCCTA-GAAGCATAGC----TT----G----AT-----T----CGTTGT-TTG-G-------------GGGTTTAATACC--A-TT--CAATAT--TT-------------GT---TA----AC-TATATAAA-TATGATCGG-TTT----GA-----GGAG----------AAAT--AAACA-GA--ATAGGA------TATATAG--------------CTT-CA-G--------T---A-------------T--CTT--T---GTG-------A---CATT-------TTGTATCG--TTTGTCTCC-TCGTT--TCAG-TAC-TTT--GA-TACTa
gi|5 : tcctcaattatatgacagtgaagctaattgctaatgcaaactgtgactctacttcaatggcagtatgtgaatttttcaaaattggatcttattcctatttggtgcgcTTGTTTATT----TCTT---TTTTATC--TT----CAAGGCACA-A-TTGTTTCCTTT-GCAACATGAG----TT----A----AT-----TAATAGATTTT-ATA-G-------------GA-TTTAGCTCCGTA-TTGAAAATATATTTCAACCCTATTTCGGTAGACATTCCATGTACCTGGAATATTAACAG-TTTTCAAGACTTTTGGATC-CCCAC-TCGAAT-GAAATA-GA--ATAT-A------TATACAGTACAT-AC----TCCAT-TA-GTATATATAT---A-------------T--TTT--T---A---------A---TAGT-------TAGTGTCA--TTTGTCACC-ACGTT--TCAG-AAG-TTT--TAGTACTTTGATTaattgctctgactaaaaattgtatttacata
gi|6 : tttgatcaatttcctgTC---TTTTT---TTTTACC--TT----CAAAGCACCAA-AT-CTTC---T-GCAGCAt
gi|6 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttcttCAAATCTTCTGCAGC-AGCACATGGA-T-TAAACA-----ATAG-C------TACACAGTGCAT-A--------------G--------T---A-------------T-------------------------CAT--------------CC--TTC-------TTGTG--TCAA-TAC-TTT--CAGTACTTTGATTgcacatggattaaacaatagctacacagtgcatagtatcatccttcttgtgtcaatactttcagtactttgattaacctttaagtgcatt
gi|7 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttctttctttttttttaccttcaaagcacTTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TT-ATTCCTTT-GCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACATAAT----CCCAT-TA-G--------T---A-------------T--TTG--TGGGG---------G---CATT-------TGGT-TTG--TTGGTCACC-TTGTT--TCAG-ACCTTTT--CAGTACTTTGATTATTaacctttaagtgcatt
gi|8 : TTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TT-ATTCCTTT-GCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-G--------T---A-------------T--TTG--TGGGG---------G---CATT-------TGGT-TTG--TTGGTCACC-TTGTT--TCAG-ACCTTTT--CAGTACTTTGATTATT
gi|9 : TCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TT-CTTCCT-----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAAT--TATCGGGTTTTCAAGACTTTTGGAGCTCCCAT-TGGAAT-AAAACA-GA--TTAG-A------TATACAGTA-AT-AC----CCCAT-TA-A--------T---A-------------TCCTTT--TTA-A---------A---CATT-------TAGTGACG--TTCGTCACCTTCGTT--TCAG-AA--TTT--AAGTACTTTGATTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GACAGTTCACAGCTATATAATCAATAGATTAAAGCTTAATACTAATCCAAACTGTAATTCTAGATTTGTTTCAATGACAGTATGTAGATTTTCAAATTTAAAATTTGACCAATATCCTGCTGTTGATCTTTTTTAATTT
Unaligned ( gi|22 ): AAGGGCAGTTCATTAGCTATATCAACAGGTGATTAAAGCTTAATAGTAATACAAATTGTAACTCCATATCAATGAGAGTAAAATATATGTATATTTTCATATTTAA
Unaligned ( gi|24 ): AGGAGTTTGTGCAATTTGTACATACTGTTCAAGAGCTATTTAGTTGCTATGCTTACCGTGGATTTGAAATTTTATACA
Unaligned ( gi|25 ): AATTCGTCAGCTATTAAACAGTGGAATTATTCTTTATACTAAGTCCAAATAAATGACAGTATGTAGA
Unaligned ( gi|27 ): TCATACCATTCTCTTACACAGAGTTGTCGGTC
Unaligned ( gi|28 ): GCACATTCTCTTACACAGAGTTGTCGGTCC
Alignments
lowQualScore : 3333 111 1111 111111111 1111111111 1111111111111111 1111 3333333333333333333333333333333333333333
lowQualScore : 2222 222 4 88 6666 0 0 3333 8 666 4 7777 000000000 7777777777 6 7777777777777777 2 2 0 2 1 77 3333 0 0 4444 6 3 2 2 44 2 2 33 2 777777 2 77777 2 9999999999 444 1111111111111111111111111111111111111111 7777777 4 5 33 2 66 2 666 44
lowQualScore : .... ... . .. .... . . .... . ... . .... ......... .......... . ................ . . . . . .. .... . . .... . . . . .. . . .. . ...... . ..... . .......... ... ........................................ ....... . . .. . .. . ... ..
lowQualScore : 3333 777 9 55 5555 8 3 1111 6 333 2 1111 999999999 0000000000 2 9999999999999999 9 2 2 7 8 33 3333 5 4 2222 7 3 7 6 44 5 5 44 5 222222 5 11111 7 9999999999 777 2222222222222222222222222222222222222222 6666666 3 3 77 9 88 8 999 22
consensus : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T---TTT--T---G---------A---CATT-------TNGTGTCGTT--CGTCACCT-CGTT--TCAGAA-C-TTT--CAGTACTTTGATTTTT
Reference ( family-457 ) : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T---TTT--T---G---------A---CATT-------TNGTGTCGTT--CGTCACCT-CGTT--TCAGAA-C-TTT--CAGTACTTTGATTTTT
gi|1 : TTGTTTTTC----TTTT---ATC-ATC--TT----CAAGGCAC-CAGTT-CTTTCCAA-ACAGCATAGG----TT----G----NN-----N----NNNNNN-NNN-N-------------NN-NNNNNNNNNNNN-NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNN----NN-NNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN-NNNNN-CAGCATAGGAATATAA--ACAG-A-------ATTCAGAATAT-GCGTTTTGCAT-TA-G--------T---A-------------T---CTTTGT---G---------G---CAAT-------GTGTATTGTT--CTACACCT-CGCT--TCAGTA-C-TTT--CAGTACTTTGAT
gi|10 : aatcataatgaattttcacaccaatctataactttctttcaatgacggcatgtagttttcaaacttagattttgatatatttcctcATC--TT----CAAAGCAC-CAGTT-CTTCCTTA-GCAGCATAGG----TT----G----AC-----T----G-TTTT-ATT-GATTAATTGTCTAAGG-TTTAGCGTTATATTTTGCAATAC--TTCAGTCATTTagtacataaagatttaattatgtataaatgaaattagtatcatattaattga
gi|10 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgCAT-TA-A--------C---A-------------T---CTT--TAT-G---------A---CATT-------TTGTACCGTT--CGTCACTC-CGTT--ACAaaagcattaacatctttatgacattttgtaccgttcgtcactccgttacattgatttattttga
gi|11 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgatcttcaaagcaccagttcttccttagcagcataggttgactgttttattgattaattgtctaaggtttagcgttatattttgcaatacttcagtcatttaaagTTGTTTTTC----TTTT---TTC-ACC--TT----CAAGACAC-CA-TT-GTTCCTTA-GCAACATAttgatttattttga
gi|12 : aaagagtgtggtgcaatttttacatgcaagggcagttcagttgccagatttactgtgaatttgaaattctgtgcagttgattcacatgcaccggtatacgacagtaaagatacatgtatacacgaatcgagacagtaatgttgttttattgataatacgtggcttaaagtttgatctgcttcctg-------------T---TTT--T---C---------AATGCATT-------T-GTATCGTT--CGTCACAT-CGTT--TCATTA-C-TTT--gaaatatatagcattattatcaga
gi|13 : tacaaagagaagttcaggtgctttaatcaccgtggattagaaattctgtatttaatcctcatgaacgcgacagtgaaactaaatgctaatccacactgtaatgctgtctcaacaacagattgcataattttcaaacttggatttttatcttattcttgttgccccccTTATT----TTTT---TTTTATC--TTTGAACAGGGCCCAAG-TTTCTTCGTTT-GTAGCAAACG----TTTATTA----AT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCTGTA-TTGGC-ATAT--Tgttgttttagtaataattattgcgatatc
gi|14 : gcagttttatttatttataaacggtttaataaatcttaatgttaatccaaactgtaactctgtttcaatgacagtatatagattttcgttttaaaatttgataaatttcctgttgtaatttttttaattaTCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TT-CTTCCT-----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAATAT---CGG-TTTTCAAGACTTTTGGAGC-CCCAT-TGGAAT-AAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-A--------T---ATCC----------T---TTT--T---A---------A---CATT-------TAGTaagatata
gi|15 : ttgA-TTTGGCGCCGTA-TAAGAAATATAGTTCAATCATTTTTCGGTAGACATTCCACCTACATAAAATATTACCAA-TTTTCATGACTTTTGGAGC-CCCAT-TGGAAT-GAAACA-AA--TTGA-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---ATCT----------T---TTT--T---G---------A---TATT-------TAGTGTCGTT--GATCACCT-CGTT--CAAGAA-C-TTTCACAGAACTTTGATTTT
gi|16 : GC-CGCAT-AAGTAT-TAAACA-GA--ACAG-A------CATACAGTATAT-A
gi|17 : gaagttaaaatgctgattcatcctgtaatgctgttttattaacagtgtccatgtgcggattttcagacttcagattttgatctcattcctgttagttttcatcattacctttatgcctaaggcagtaaccctttcctt----GATTTT-ATA-G-------------GA-CTTAGCGCCGTA-TTGGCAATAT--TTCAACCCTTTTCTGGTAAACA----GC-TACATAAAATAATATAAG-TTTTTAAGACTCTTGAAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-T--------TATCA-------------T---TTT--T---G---------G---CATT-------Tg
gi|19 : GC-CCCAT-TGGAAT-GAAACA-GA--ATAG-A------TATATAGTACAT-AT----CCCAT-TG-A--------T---ATCTTCTTCTTTTTT---TTT--T---T---------A---CATCAAGTTTATAGTGTCGTT--CGTCACCca
gi|2 : TTGTTAATC------TT---TTTTATC--GT----CAGGGCCCAAT-TT-CGTCCTTTTGCAGCATATGGTAATT----A----AT-----T----GATTTT-ATA-G-------------CA-TT-AGCGTCGTA-TTGGTAATAT--TTTAGCCCTTTTACGATAGACA----GC-TATATAAAATATGATCAA--TTTCGAGACTTTTGGAGT-TTCAT-TGGACT-TGAACA-GA--ATTG-ATACATGTATACAGTATAT-AC----CCAAT-TA-T--------T---ATC-----------T---TTT--T---G---------A---CATT-------TTGTATCCTT--CGTAATCT-CGTA--ATAGTA-C-TTT--CAGTACTTTGATTTattctcttgcacagagttgtcg
gi|20 : agtttatcagctatgtaaccggtgtatatctaaactgtagctctgtttcaatgacagtatgcaatgtatagattttcaatctaaattttgataagttttctgCCAA-TTGA-T-GAAACA-GA--ATAA-A-------ATA-AGTACAT-AC----CCTATACATG--------T---A-------------T---TTT--T---TTTTTTTTTTA---CATT-------TAGTTTCGTTTTCGTCACTT-CGTTA-TCAGAAAC-TTT--CAGTACTTT-ATTTTTc
gi|21 : GTA-TTTGCTATAT--TTAAATCCTTTTCCATTAGACA----AC-TAAATAAAATATTATTAG-TTTAAAAGACGTTTGGAGC-TACAA-CGGAAT-GAAACA-GA--ATAG-G------TACACAGTACAT-att
gi|23 : -TT-CTTCGTTT-GTAGCAAACG----TT----ATTTAAT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCCGTA-TTGGCAATAT--
gi|26 : ttctgaaattttcaacacatttcttttgaat--T---G---------A---CATT-------TTGTGTCGTT--CTTCACCT-CATT--TC-------------AGTACTTTGATTTTT
gi|3 : gtgaTTGTTTATC-------T---TTCTATC--TT----C---------------TTCCTTT-GCAGCATA-----------------------------------------------------------TAGCGCCATA-TTGGCAATAT--TTTAACCCTTTTCCGGTAGAAA----AC-TACATAAAATATTATCAG-TTTTCAATACTTTTGGAGC-CCCAA-TGGAAT-GAAACA-GATGCTAT-A------TATACAGGGT-T-GT----TGTTT-TT-G--------T---T-------------T---TTT--TTTGG---------A---CATT-------TAGTGTCGTT--CGT--------TTGATCAGAA-C-TTT--CCGTACCTTGATTa
gi|4 : agttcatcagctatatcaacagtggattaaagcttaatactaatccaaactgtaactctgtttcaatgacagtatgtagattttcaaattcaaattttgataaatttctgC--TT----CAAGGC-CACA-TTTCTTCCCTA-GAAGCATAGC----TT----G----AT-----T----CGTTGT-TTG-G-------------GGGTTTAATACC--A-TT--CAATAT--TT-------------GT---TA----AC-TATATAAA-TATGATCGG-TTT----GA-----GGAG----------AAAT--AAACA-GA--ATAGGA------TATATAG--------------CTT-CA-G--------T---A-------------T---CTT--T---GTG-------A---CATT-------TTGTATCGTT--TGTCTCCT-CGTT--TCAGTA-C-TTT--GA-TACTa
gi|5 : tcctcaattatatgacagtgaagctaattgctaatgcaaactgtgactctacttcaatggcagtatgtgaatttttcaaaattggatcttattcctatttggtgcgcTTGTTTATT----TCTT---TTTTATC--TT----CAAGGCACA-A-TTGTTTCCTTT-GCAACATGAG----TT----A----AT-----TAATAGATTTT-ATA-G-------------GA-TTTAGCTCCGTA-TTGAAAATATATTTCAACCCTATTTCGGTAGACATTCCATGTACCTGGAATATTAACAG-TTTTCAAGACTTTTGGATC-CCCAC-TCGAAT-GAAATA-GA--ATAT-A------TATACAGTACAT-AC----TCCAT-TA-GTATATATAT---A-------------T---TTT--T---A---------A---TAGT-------TAGTGTCATT--TGTCACCA-CGTT--TCAGAA-G-TTT--TAGTACTTTGATTTaattgctctgactaaaaattgtatttacata
gi|6 : tttgatcaatttcctgTC---TTTTT---TTTTACC--TT----CAAAGCACCAA-AT-CTTC---T-GCAGCA
gi|6 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttcttCAAATCTTCTGCAGC-AGCACATGGA-T-TAAACA-----ATAG-C------TACACAGTGCAT-A--------------G--------T---A-------------T--------------------------CAT--------------CCTT--C------T-TGTG--TCAATA-C-TTT--CAGTACTTTGATTgcacatggattaaacaatagctacacagtgcatagtatcatccttcttgtgtcaatactttcagtactttgattaacctttaagtgcatt
gi|7 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttctttctttttttttaccttcaaagcacTTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TT-ATTCCTTT-GCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACATAAT----CCCAT-TA-G--------T---A-------------T---TTG--TGGGG---------G---CATT-------TGGT-TTGTT--GGTCACCT-TGTT--TCAGAC-CTTTT--CAGTACTTTGATTATTaacctttaagtgcatt
gi|8 : TTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TT-ATTCCTTT-GCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-G--------T---A-------------T---TTG--TGGGG---------G---CATT-------TGGT-TTGTT--GGTCACCT-TGTT--TCAGAC-CTTTT--CAGTACTTTGATTATT
gi|9 : TCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TT-CTTCCT-----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAAT--TATCGGGTTTTCAAGACTTTTGGAGCTCCCAT-TGGAAT-AAAACA-GA--TTAG-A------TATACAGTA-AT-AC----CCCAT-TA-A--------T---A-------------TCCTTTT--T---A---------AA--CATT-------TAGTGACGTT--CGTCACCTTCGTT--TCAGAA---TTT--AAGTACTTTGATTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GACAGTTCACAGCTATATAATCAATAGATTAAAGCTTAATACTAATCCAAACTGTAATTCTAGATTTGTTTCAATGACAGTATGTAGATTTTCAAATTTAAAATTTGACCAATATCCTGCTGTTGATCTTTTTTAATTT
Unaligned ( gi|22 ): AAGGGCAGTTCATTAGCTATATCAACAGGTGATTAAAGCTTAATAGTAATACAAATTGTAACTCCATATCAATGAGAGTAAAATATATGTATATTTTCATATTTAA
Unaligned ( gi|24 ): AGGAGTTTGTGCAATTTGTACATACTGTTCAAGAGCTATTTAGTTGCTATGCTTACCGTGGATTTGAAATTTTATACA
Unaligned ( gi|25 ): AATTCGTCAGCTATTAAACAGTGGAATTATTCTTTATACTAAGTCCAAATAAATGACAGTATGTAGA
Unaligned ( gi|27 ): TCATACCATTCTCTTACACAGAGTTGTCGGTC
Unaligned ( gi|28 ): GCACATTCTCTTACACAGAGTTGTCGGTCC
Alignments
lowQualScore : 3333 111 1111 111111111 1111111111 1111111111111111 1111 3333333333333333333333333333333333333333
lowQualScore : 2222 222 4 88 6666 0 0 3333 8 666 4 7777 000000000 7777777777 6 7777777777777777 2 2 0 2 1 77 3333 0 0 4444 6 3 2 2 44 2 2 33 2 777777 2 77777 2 9999999999 444 1111111111111111111111111111111111111111 7777777 4 5 33 2 66 2 666 44
lowQualScore : .... ... . .. .... . . .... . ... . .... ......... .......... . ................ . . . . . .. .... . . .... . . . . .. . . .. . ...... . ..... . .......... ... ........................................ ....... . . .. . .. . ... ..
lowQualScore : 3333 777 9 55 5555 8 3 1111 6 333 2 1111 999999999 0000000000 2 9999999999999999 9 2 2 7 8 33 3333 5 4 2222 7 3 7 6 44 5 5 44 5 222222 5 11111 7 9999999999 777 2222222222222222222222222222222222222222 6666666 3 3 77 9 88 8 999 22
consensus : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T---TTT--T---G---------A---CATT-------TNGTGTCGTT--CGTCACCT-CGTT--TCAGAA-C-TTT--CAGTACTTTGATTTTT
Reference ( family-457 ) : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T---TTT--T---G---------A---CATT-------TNGTGTCGTT--CGTCACCT-CGTT--TCAGAA-C-TTT--CAGTACTTTGATTTTT
gi|1 : TTGTTTTTC----TTTT---ATC-ATC--TT----CAAGGCAC-CAGTT-CTTTCCAA-ACAGCATAGG----TT----G----NN-----N----NNNNNN-NNN-N-------------NN-NNNNNNNNNNNN-NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNN----NN-NNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN-NNNNN-CAGCATAGGAATATAA--ACAG-A-------ATTCAGAATAT-GCGTTTTGCAT-TA-G--------T---A-------------T---CTTTGT---G---------G---CAAT-------GTGTATTGTT--CTACACCT-CGCT--TCAGTA-C-TTT--CAGTACTTTGAT
gi|10 : aatcataatgaattttcacaccaatctataactttctttcaatgacggcatgtagttttcaaacttagattttgatatatttcctcATC--TT----CAAAGCAC-CAGTT-CTTCCTTA-GCAGCATAGG----TT----G----AC-----T----G-TTTT-ATT-GATTAATTGTCTAAGG-TTTAGCGTTATATTTTGCAATAC--TTCAGTCATTTagtacataaagatttaattatgtataaatgaaattagtatcatattaattga
gi|10 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgCAT-TA-A--------C---A-------------T---CTT--TAT-G---------A---CATT-------TTGTACCGTT--CGTCACTC-CGTT--ACAaaagcattaacatctttatgacattttgtaccgttcgtcactccgttacattgatttattttga
gi|11 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgatcttcaaagcaccagttcttccttagcagcataggttgactgttttattgattaattgtctaaggtttagcgttatattttgcaatacttcagtcatttaaagTTGTTTTTC----TTTT---TTC-ACC--TT----CAAGACAC-CA-TT-GTTCCTTA-GCAACATAttgatttattttga
gi|12 : aaagagtgtggtgcaatttttacatgcaagggcagttcagttgccagatttactgtgaatttgaaattctgtgcagttgattcacatgcaccggtatacgacagtaaagatacatgtatacacgaatcgagacagtaatgttgttttattgataatacgtggcttaaagtttgatctgcttcctg-------------T---TTT--T---C---------AATGCATT-------T-GTATCGTT--CGTCACAT-CGTT--TCATTA-C-TTT--gaaatatatagcattattatcaga
gi|13 : tacaaagagaagttcaggtgctttaatcaccgtggattagaaattctgtatttaatcctcatgaacgcgacagtgaaactaaatgctaatccacactgtaatgctgtctcaacaacagattgcataattttcaaacttggatttttatcttattcttgttgccccccTTATT----TTTT---TTTTATC--TTTGAACAGGGCCCAAG-TTTCTTCGTTT-GTAGCAAACG----TTTATTA----AT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCTGTA-TTGGC-ATAT--Tgttgttttagtaataattattgcgatatc
gi|14 : gcagttttatttatttataaacggtttaataaatcttaatgttaatccaaactgtaactctgtttcaatgacagtatatagattttcgttttaaaatttgataaatttcctgttgtaatttttttaattaTCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TT-CTTCCT-----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAATAT---CGG-TTTTCAAGACTTTTGGAGC-CCCAT-TGGAAT-AAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-A--------T---ATCC----------T---TTT--T---A---------A---CATT-------TAGTaagatata
gi|15 : ttgA-TTTGGCGCCGTA-TAAGAAATATAGTTCAATCATTTTTCGGTAGACATTCCACCTACATAAAATATTACCAA-TTTTCATGACTTTTGGAGC-CCCAT-TGGAAT-GAAACA-AA--TTGA-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---ATCT----------T---TTT--T---G---------A---TATT-------TAGTGTCGTT--GATCACCT-CGTT--CAAGAA-C-TTTCACAGAACTTTGATTTT
gi|16 : GC-CGCAT-AAGTAT-TAAACA-GA--ACAG-A------CATACAGTATAT-A
gi|17 : gaagttaaaatgctgattcatcctgtaatgctgttttattaacagtgtccatgtgcggattttcagacttcagattttgatctcattcctgttagttttcatcattacctttatgcctaaggcagtaaccctttcctt----GATTTT-ATA-G-------------GA-CTTAGCGCCGTA-TTGGCAATAT--TTCAACCCTTTTCTGGTAAACA----GC-TACATAAAATAATATAAG-TTTTTAAGACTCTTGAAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-T--------TATCA-------------T---TTT--T---G---------G---CATT-------Tg
gi|19 : GC-CCCAT-TGGAAT-GAAACA-GA--ATAG-A------TATATAGTACAT-AT----CCCAT-TG-A--------T---ATCTTCTTCTTTTTT---TTT--T---T---------A---CATCAAGTTTATAGTGTCGTT--CGTCACCca
gi|2 : TTGTTAATC------TT---TTTTATC--GT----CAGGGCCCAAT-TT-CGTCCTTTTGCAGCATATGGTAATT----A----AT-----T----GATTTT-ATA-G-------------CA-TT-AGCGTCGTA-TTGGTAATAT--TTTAGCCCTTTTACGATAGACA----GC-TATATAAAATATGATCAA--TTTCGAGACTTTTGGAGT-TTCAT-TGGACT-TGAACA-GA--ATTG-ATACATGTATACAGTATAT-AC----CCAAT-TA-T--------T---ATC-----------T---TTT--T---G---------A---CATT-------TTGTATCCTT--CGTAATCT-CGTA--ATAGTA-C-TTT--CAGTACTTTGATTTattctcttgcacagagttgtcg
gi|20 : agtttatcagctatgtaaccggtgtatatctaaactgtagctctgtttcaatgacagtatgcaatgtatagattttcaatctaaattttgataagttttctgCCAA-TTGA-T-GAAACA-GA--ATAA-A-------ATA-AGTACAT-AC----CCTATACATG--------T---A-------------T---TTT--T---TTTTTTTTTTA---CATT-------TAGTTTCGTTTTCGTCACTT-CGTTA-TCAGAAAC-TTT--CAGTACTTT-ATTTTTc
gi|21 : GTA-TTTGCTATAT--TTAAATCCTTTTCCATTAGACA----AC-TAAATAAAATATTATTAG-TTTAAAAGACGTTTGGAGC-TACAA-CGGAAT-GAAACA-GA--ATAG-G------TACACAGTACAT-att
gi|23 : -TT-CTTCGTTT-GTAGCAAACG----TT----ATTTAAT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCCGTA-TTGGCAATAT--
gi|26 : ttctgaaattttcaacacatttcttttgaat--T---G---------A---CATT-------TTGTGTCGTT--CTTCACCT-CATT--TC-------------AGTACTTTGATTTTT
gi|3 : gtgaTTGTTTATC-------T---TTCTATC--TT----C---------------TTCCTTT-GCAGCATA-----------------------------------------------------------TAGCGCCATA-TTGGCAATAT--TTTAACCCTTTTCCGGTAGAAA----AC-TACATAAAATATTATCAG-TTTTCAATACTTTTGGAGC-CCCAA-TGGAAT-GAAACA-GATGCTAT-A------TATACAGGGT-T-GT----TGTTT-TT-G--------T---T-------------T---TTT--TTTGG---------A---CATT-------TAGTGTCGTT--CGT--------TTGATCAGAA-C-TTT--CCGTACCTTGATTa
gi|4 : agttcatcagctatatcaacagtggattaaagcttaatactaatccaaactgtaactctgtttcaatgacagtatgtagattttcaaattcaaattttgataaatttctgC--TT----CAAGGC-CACA-TTTCTTCCCTA-GAAGCATAGC----TT----G----AT-----T----CGTTGT-TTG-G-------------GGGTTTAATACC--A-TT--CAATAT--TT-------------GT---TA----AC-TATATAAA-TATGATCGG-TTT----GA-----GGAG----------AAAT--AAACA-GA--ATAGGA------TATATAG--------------CTT-CA-G--------T---A-------------T---CTT--T---GTG-------A---CATT-------TTGTATCGTT--TGTCTCCT-CGTT--TCAGTA-C-TTT--GA-TACTa
gi|5 : tcctcaattatatgacagtgaagctaattgctaatgcaaactgtgactctacttcaatggcagtatgtgaatttttcaaaattggatcttattcctatttggtgcgcTTGTTTATT----TCTT---TTTTATC--TT----CAAGGCACA-A-TTGTTTCCTTT-GCAACATGAG----TT----A----AT-----TAATAGATTTT-ATA-G-------------GA-TTTAGCTCCGTA-TTGAAAATATATTTCAACCCTATTTCGGTAGACATTCCATGTACCTGGAATATTAACAG-TTTTCAAGACTTTTGGATC-CCCAC-TCGAAT-GAAATA-GA--ATAT-A------TATACAGTACAT-AC----TCCAT-TA-GTATATATAT---A-------------T---TTT--T---A---------A---TAGT-------TAGTGTCATT--TGTCACCA-CGTT--TCAGAA-G-TTT--TAGTACTTTGATTTaattgctctgactaaaaattgtatttacata
gi|6 : tttgatcaatttcctgTC---TTTTT---TTTTACC--TT----CAAAGCACCAA-AT-CTTC---T-GCAGCA
gi|6 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttcttCAAATCTTCTGCAGC-AGCACATGGA-T-TAAACA-----ATAG-C------TACACAGTGCAT-A--------------G--------T---A-------------T--------------------------CAT--------------CCTT--C------T-TGTG--TCAATA-C-TTT--CAGTACTTTGATTgcacatggattaaacaatagctacacagtgcatagtatcatccttcttgtgtcaatactttcagtactttgattaacctttaagtgcatt
gi|7 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttctttctttttttttaccttcaaagcacTTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TT-ATTCCTTT-GCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACATAAT----CCCAT-TA-G--------T---A-------------T---TTG--TGGGG---------G---CATT-------TGGT-TTGTT--GGTCACCT-TGTT--TCAGAC-CTTTT--CAGTACTTTGATTATTaacctttaagtgcatt
gi|8 : TTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TT-ATTCCTTT-GCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-G--------T---A-------------T---TTG--TGGGG---------G---CATT-------TGGT-TTGTT--GGTCACCT-TGTT--TCAGAC-CTTTT--CAGTACTTTGATTATT
gi|9 : TCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TT-CTTCCT-----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAAT--TATCGGGTTTTCAAGACTTTTGGAGCTCCCAT-TGGAAT-AAAACA-GA--TTAG-A------TATACAGTA-AT-AC----CCCAT-TA-A--------T---A-------------TCCTTTT--T---A---------AA--CATT-------TAGTGACGTT--CGTCACCTTCGTT--TCAGAA---TTT--AAGTACTTTGATTTTT
blockSeqs : CATG AAA C CT TGAA CAG T TTT G GTAA TATTA CACATT T TGATTAATTGTCTAA G T T T AG CAGT TTCC C G T C CA . . TG G TACATG A C A GTATATATA ATC TCTTCTTCTTTTTTTTTTTA AAGTTTA T A TT T GA T AC CA
blockSeqs : CATG AAA T CT . AAG T TA C . ATTTA CACATT T TAG . T . G AT CAAT TTCC G . . C T . . . . . . C . TG . TTTTTTTTTTTTTTTA . A A . . A A CT .
blockSeqs : T . T . . AAA G TA C . G TAATA . TAG . T . C . CAAC . . . . G T . . . . . . T . A . TCCTTTTTAAA . A G . . . T CT .
blockSeqs : G . C . . AAT . TT T . A T . AG . T . A . TAGC . . . . A T . . . . . . T . A . TTTTTCAATG . A G . . . A C .
blockSeqs : G . T . . ACA . TT C . A T . AG . T . G . AAAT . . . . C A . . . . . . C . G . TCCTTTTTAA . T A . . . A C .
blockSeqs : . . T . . CAA . TT G . G T . AG . T . G . TAAC . . . . T T . . . . . . C . T . TCTTTTTTGA . A T . . . T C .
blockSeqs : . . C . . ACA . TA A . A T . AG . T . T . CAAC . . . . C T . . . . . . T . A . TTTTTTTGGA . T G . . . A C .
blockSeqs : . . C . . ACA . TT A . A T . GG . T . G . CAGC . . . . A A . . . . . . C . T . TTTGTGGGGG . A G . . . T C .
blockSeqs : . . . . . AAA . TT A . A T . AG . T . G . CAGC . . . . C A . . . . . . T . G . TTTGTGGGGG . T A . . . A G .
blockSeqs : . . . . . CA . TT C . A T . TG . T . G . . . . . . C A . . . . . . T . G . TCTTTATGA . A G . . . A C .
blockSeqs : . . AA . T . . . . . TG . . . G . . . . . . G C . . . . . . C . G . TCTTTTTGA . G G . . . A . .
blockSeqs : . . . . . . . . . . G . . . A A . . . . . . . . G . TCTTTGTGA . G . . . . . . .
blockSeqs : . . . . . C . . A A . . . . . . . . G . TTTTTGG . A . . . .
blockSeqs : . . . . C T . . . . . . . A . TTTTTAA . . . .
blockSeqs : . . . . . . . . T . .
blockSeqs : .
blockSeqCons : C**** TCTTTTTTGA******************************
originalCons : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---A-------------T---TTT--T---G---------A---CATT-------TNGTGTCGTT--CGTCACCT-CGTT--TCAGAA-C-TTT--CAGTACTTTGATTTTT
finalCons : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-G--------T---ATCTTTTTTGA------------------------------CATT-------TNGTGTCGTT--CGTCACCT-CGTT--TCAGAA-C-TTT--CAGTACTTTGATTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GACAGTTCACAGCTATATAATCAATAGATTAAAGCTTAATACTAATCCAAACTGTAATTCTAGATTTGTTTCAATGACAGTATGTAGATTTTCAAATTTAAAATTTGACCAATATCCTGCTGTTGATCTTTTTTAATTT
Unaligned ( gi|22 ): AAGGGCAGTTCATTAGCTATATCAACAGGTGATTAAAGCTTAATAGTAATACAAATTGTAACTCCATATCAATGAGAGTAAAATATATGTATATTTTCATATTTAA
Unaligned ( gi|24 ): AGGAGTTTGTGCAATTTGTACATACTGTTCAAGAGCTATTTAGTTGCTATGCTTACCGTGGATTTGAAATTTTATACA
Unaligned ( gi|25 ): AATTCGTCAGCTATTAAACAGTGGAATTATTCTTTATACTAAGTCCAAATAAATGACAGTATGTAGA
Unaligned ( gi|27 ): TCATACCATTCTCTTACACAGAGTTGTCGGTC
Unaligned ( gi|28 ): GCACATTCTCTTACACAGAGTTGTCGGTCC
Alignments
lowQualScore : 3333 111 1111 111111111 1111111111 1111111111111111 1111 1111111111111111
lowQualScore : 2222 222 4 88 6666 0 0 3333 8 666 4 7777 000000000 7777777777 6 7777777777777777 2 2 0 2 1 77 3333 0 0 4444 6 3 2 2 44 2 2 33 2 777777 2 77777 2 2 9999999999999999 777777 1 55 7777777 4 5 33 2 66 66666 44
lowQualScore : .... ... . .. .... . . .... . ... . .... ......... .......... . ................ . . . . . .. .... . . .... . . . . .. . . .. . ...... . ..... . . ................ ...... . .. ....... . . .. . .. ..... ..
lowQualScore : 3333 777 9 55 5555 8 3 1111 6 333 2 1111 999999999 0000000000 2 9999999999999999 9 2 2 7 8 33 3333 5 4 2222 7 3 7 6 44 5 5 44 5 222222 5 11111 7 7 4444444444444444 222222 9 66 6666666 3 3 77 9 88 33333 22
consensus : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-GTATC----------T-----TTT------TTGA--CATT-------TNGTGTCG--TTCGTCACCT-CGTT--TCAG-AAC-TTT--CAGTACTTTGATTTTT
Reference ( family-457 ) : TTGTTTATC---GTTTT---TTCTATC--TT----CAAGGCACACA-TT-CTTCCTTT-GCAGCATANG----TT----A----AT-----T----GATTTT-ATN-G-------------GA-TTTAGCGCCGTA-TTGGCAATAT--TTCAGCCCTTTTCCGGTAGACA----AC-TACATAAAATATTATCAG-TTTTCAAGACTTTTGGAGC-CCCAN-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-GTATC----------T-----TTT------TTGA--CATT-------TNGTGTCG--TTCGTCACCT-CGTT--TCAG-AAC-TTT--CAGTACTTTGATTTTT
gi|1 : TTGTTTTTC----TTTT---ATC-ATC--TT----CAAGGCAC-CAGTT-CTTTCCAA-ACAGCATAGG----TT----G----NN-----N----NNNNNN-NNN-N-------------NN-NNNNNNNNNNNN-NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNN----NN-NNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNN-NNNNN-CAGCATAGGAATATAA--ACAG-A-------ATTCAGAATAT-GCGTTTTGCAT-TA-GTATC----------------TTT------GTGG--CAAT-------GTGTATTG--TTCTACACCT-CGCT--TCAG-TAC-TTT--CAGTACTTTGAT
gi|10 : aatcataatgaattttcacaccaatctataactttctttcaatgacggcatgtagttttcaaacttagattttgatatatttcctcATC--TT----CAAAGCAC-CAGTT-CTTCCTTA-GCAGCATAGG----TT----G----AC-----T----G-TTTT-ATT-GATTAATTGTCTAAGG-TTTAGCGTTATATTTTGCAATAC--TTCAGTCATTTagtacataaagatttaattatgtataaatgaaattagtatcatattaattga
gi|10 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgCAT-TA-ACATC----------T-----TTA------T-GA--CATT-------TTGTACCG--TTCGTCACTC-CGTT--ACAaaagcattaacatctttatgacattttgtaccgttcgtcactccgttacattgatttattttga
gi|11 : gacagtaaatcttaatgctactccaaactctaaccctgtttcaatgacagtatgcagatattttttatttagatctatttcctgttcatttatgatcttcaaagcaccagttcttccttagcagcataggttgactgttttattgattaattgtctaaggtttagcgttatattttgcaatacttcagtcatttaaagTTGTTTTTC----TTTT---TTC-ACC--TT----CAAGACAC-CA-TT-GTTCCTTA-GCAACATAttgatttattttga
gi|12 : aaagagtgtggtgcaatttttacatgcaagggcagttcagttgccagatttactgtgaatttgaaattctgtgcagttgattcacatgcaccggtatacgacagtaaagatacatgtatacacgaatcgagacagtaatgttgttttattgataatacgtggcttaaagtttgatctgcttcctgC----------T-----TTT------TCAATGCATT-------T-GTATCG--TTCGTCACAT-CGTT--TCAT-TAC-TTT--gaaatatatagcattattatcaga
gi|13 : tacaaagagaagttcaggtgctttaatcaccgtggattagaaattctgtatttaatcctcatgaacgcgacagtgaaactaaatgctaatccacactgtaatgctgtctcaacaacagattgcataattttcaaacttggatttttatcttattcttgttgcccccTTATT----TTTT---TTTTATC--TTTGAACAGGGCCCAAG-TTTCTTCGTTT-GTAGCAAACG----TTTATTA----AT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCTGTA-TTGGC-ATAT--Tgttgttttagtaataattattgcgatatc
gi|14 : gcagttttatttatttataaacggtttaataaatcttaatgttaatccaaactgtaactctgtttcaatgacagtatatagattttcgttttaaaatttgataaatttcctgttgtaatttttttaattaTCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TT-CTTCCT-----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAATAT---CGG-TTTTCAAGACTTTTGGAGC-CCCAT-TGGAAT-AAAACA-GA--ATAG-A------TATACAGTACAT-AC----CCCAT-TA-ATATC----------C-----TTT------TTAA--CATT-------TAGTaagatata
gi|15 : ttgA-TTTGGCGCCGTA-TAAGAAATATAGTTCAATCATTTTTCGGTAGACATTCCACCTACATAAAATATTACCAA-TTTTCATGACTTTTGGAGC-CCCAT-TGGAAT-GAAACA-AA--TTGA-A------TATACAGTACAT-AC----CCCAT-TA-GTATC----------T-----TTT------TTGA--TATT-------TAGTGTCG--TTGATCACCT-CGTT--CAAG-AAC-TTTCACAGAACTTTGATTTT
gi|16 : GC-CGCAT-AAGTAT-TAAACA-GA--ACAG-A------CATACAGTATAT-A
gi|17 : gaagttaaaatgctgattcatcctgtaatgctgttttattaacagtgtccatgtgcggattttcagacttcagattttgatctcattcctgttagttttcatcattacctttatgcctaaggcagtaaccctttcctt----GATTTT-ATA-G-------------GA-CTTAGCGCCGTA-TTGGCAATAT--TTCAACCCTTTTCTGGTAAACA----GC-TACATAAAATAATATAAG-TTTTTAAGACTCTTGAAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-TTATC----------A-----TTT------TTGG--CATT-------Tg
gi|19 : GC-CCCAT-TGGAAT-GAAACA-GA--ATAG-A------TATATAGTACAT-AT----CCCAT-TG-ATATCTTCTTCTTTTT-----TTT------TTTA--CATCAAGTTTATAGTGTCG--TTCGTCACCca
gi|2 : TTGTTAATC------TT---TTTTATC--GT----CAGGGCCCAAT-TT-CGTCCTTTTGCAGCATATGGTAATT----A----AT-----T----GATTTT-ATA-G-------------CA-TT-AGCGTCGTA-TTGGTAATAT--TTTAGCCCTTTTACGATAGACA----GC-TATATAAAATATGATCAA--TTTCGAGACTTTTGGAGT-TTCAT-TGGACT-TGAACA-GA--ATTG-ATACATGTATACAGTATAT-AC----CCAAT-TA-TTATC----------------TTT------TTGA--CATT-------TTGTATCC--TTCGTAATCT-CGTA--ATAG-TAC-TTT--CAGTACTTTGATTTattctcttgcacagagttgtcg
gi|20 : agtttatcagctatgtaaccggtgtatatctaaactgtagctctgtttcaatgacagtatgcaatgtatagattttcaatctaaattttgataagttttctgCCAA-TTGA-T-GAAACA-GA--ATAA-A-------ATA-AGTACAT-AC----CCTATACATGTATT----------T-----TTTTTTTTTTTTA--CATT-------TAGTTTCGTTTTCGTCACTT-CGTTA-TCAGAAAC-TTT--CAGTACTTT-ATTTTTc
gi|21 : GTA-TTTGCTATAT--TTAAATCCTTTTCCATTAGACA----AC-TAAATAAAATATTATTAG-TTTAAAAGACGTTTGGAGC-TACAA-CGGAAT-GAAACA-GA--ATAG-G------TACACAGTACAT-att
gi|23 : -TT-CTTCGTTT-GTAGCAAACG----TT----ATTTAAT-----T----GATGTT-ATA-G-------------GA-TT-AGCGCCGTA-TTGGCAATAT--
gi|26 : ttctgaaattttcaacacatttcttttgaatTGA--CATT-------TTGTGTCG--TTCTTCACCT-CATT--TC-------------AGTACTTTGATTTTT
gi|3 : gtgaTTGTTTATC-------T---TTCTATC--TT----C---------------TTCCTTT-GCAGCATA-----------------------------------------------------------TAGCGCCATA-TTGGCAATAT--TTTAACCCTTTTCCGGTAGAAA----AC-TACATAAAATATTATCAG-TTTTCAATACTTTTGGAGC-CCCAA-TGGAAT-GAAACA-GATGCTAT-A------TATACAGGGT-T-GT----TGTTT-TT-GTTTT----------T-----TTT------TGGA--CATT-------TAGTGTCG--TTCGT--------TTGATCAG-AAC-TTT--CCGTACCTTGATTa
gi|4 : agttcatcagctatatcaacagtggattaaagcttaatactaatccaaactgtaactctgtttcaatgacagtatgtagattttcaaattcaaattttgataaatttctgC--TT----CAAGGC-CACA-TTTCTTCCCTA-GAAGCATAGC----TT----G----AT-----T----CGTTGT-TTG-G-------------GGGTTTAATACC--A-TT--CAATAT--TT-------------GT---TA----AC-TATATAAA-TATGATCGG-TTT----GA-----GGAG----------AAAT--AAACA-GA--ATAGGA------TATATAG--------------CTT-CA-GTATC----------T-----TTG------T-GA--CATT-------TTGTATCG--TTTGTCTCCT-CGTT--TCAG-TAC-TTT--GA-TACTa
gi|5 : tcctcaattatatgacagtgaagctaattgctaatgcaaactgtgactctacttcaatggcagtatgtgaatttttcaaaattggatcttattcctatttggtgcgcTTGTTTATT----TCTT---TTTTATC--TT----CAAGGCACA-A-TTGTTTCCTTT-GCAACATGAG----TT----A----AT-----TAATAGATTTT-ATA-G-------------GA-TTTAGCTCCGTA-TTGAAAATATATTTCAACCCTATTTCGGTAGACATTCCATGTACCTGGAATATTAACAG-TTTTCAAGACTTTTGGATC-CCCAC-TCGAAT-GAAATA-GA--ATAT-A------TATACAGTACAT-AC----TCCAT-TA-GTATA----------TATATATTT------TTAA--TAGT-------TAGTGTCA--TTTGTCACCA-CGTT--TCAG-AAG-TTT--TAGTACTTTGATTTaattgctctgactaaaaattgtatttacata
gi|6 : tttgatcaatttcctgTC---TTTTT---TTTTACC--TT----CAAAGCACCAA-AT-CTTC---T-GCAGCA
gi|6 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttcttCAAATCTTCTGCAGC-AGCACATGGA-T-TAAACA-----ATAG-C------TACACAGTGCAT-A--------------GTATC----------A-----TCC------TT---------------------------------CT-TGTG--TCAA-TAC-TTT--CAGTACTTTGATTgcacatggattaaacaatagctacacagtgcatagtatcatccttcttgtgtcaatactttcagtactttgattaacctttaagtgcatt
gi|7 : tttctagttcattgtggattggaaattctttgtaatactgctattgtcttcatgcatgcaacattgaagttaaatgctaattcagactgcaatgctgttttattgacagtatgtagattttcttaacctgcttctttttctttctttttttttaccttcaaagcacTTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TT-ATTCCTTT-GCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACATAAT----CCCAT-TA-GTATT----------T-----GTG------GGGG--CATT-------TGGT-TTG--TTGGTCACCT-TGTT--TCAG-ACCTTTT--CAGTACTTTGATTATTaacctttaagtgcatt
gi|8 : TTGTGTATC---GTTTT---TTCTATT--TT----CAAGGCACACA-TT-ATTCCTTT-GCAGCATAAG----TT----A----AT-----T----GATTTT-ATT-G-------------GA-TTTAGCGCCATA-CTGGCAATAT--TTCAGCTCTTTTCCGGTAGACG----AC-TACATAAAATATTATCAG-CTTTTAAGACCTTTGGAGC-CACAA-TGGAAT-GAAACA-GA--ATAG-A------TATACAGTACAT-AT----CCCAT-TA-GTATT----------T-----GTG------GGGG--CATT-------TGGT-TTG--TTGGTCACCT-TGTT--TCAG-ACCTTTT--CAGTACTTTGATTATT
gi|9 : TCGTTTATCCATGTTTTAAATT-TATCCTTT----CAAG--ACAAA-TT-CTTCCT-----AGCGTACG----TT----A----ATCACATT----GATTTTTATTAG-------------GA-TTTAGTGC-GTA-TGCGCAAT----------------TCGGTAGACC----AC-TGCTTAAAAT--TATCGGGTTTTCAAGACTTTTGGAGCTCCCAT-TGGAAT-AAAACA-GA--TTAG-A------TATACAGTA-AT-AC----CCCAT-TA-ATATC----------C-----TTT------TTAAA-CATT-------TAGTGACG--TTCGTCACCTTCGTT--TCAG-AA--TTT--AAGTACTTTGATTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GACAGTTCACAGCTATATAATCAATAGATTAAAGCTTAATACTAATCCAAACTGTAATTCTAGATTTGTTTCAATGACAGTATGTAGATTTTCAAATTTAAAATTTGACCAATATCCTGCTGTTGATCTTTTTTAATTT
Unaligned ( gi|22 ): AAGGGCAGTTCATTAGCTATATCAACAGGTGATTAAAGCTTAATAGTAATACAAATTGTAACTCCATATCAATGAGAGTAAAATATATGTATATTTTCATATTTAA
Unaligned ( gi|24 ): AGGAGTTTGTGCAATTTGTACATACTGTTCAAGAGCTATTTAGTTGCTATGCTTACCGTGGATTTGAAATTTTATACA
Unaligned ( gi|25 ): AATTCGTCAGCTATTAAACAGTGGAATTATTCTTTATACTAAGTCCAAATAAATGACAGTATGTAGA
Unaligned ( gi|27 ): TCATACCATTCTCTTACACAGAGTTGTCGGTC
Unaligned ( gi|28 ): GCACATTCTCTTACACAGAGTTGTCGGTCC