lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 333333333333333 33333333333 1111 1 77777777777777777777777777777777777777777777 11 1 111 22222 11 11111 1 1 11 11 1 11 2222 11 22222 111 111 11 111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 1111 222 1111 11 444444444444444444444444444444444444444444444444444444444 1 11 222 555555555555555555555555 222222 1 333 1 11 111 2222222222222222222222222222222222222222222222222222222222222 1 22222 11111 1111 4444444444 111 22222 1 222222 111 111 1 1111 111 11111 11 1 111111
lowQualScore : 0 0 6 77 5 1 77 5 3 5 000000000000000 6 77 1 1 5 77777777777 5 1111 5 0 2 6 44444444444444444444444444444444444444444444 33 0 333 8 8 44444 2 2 99 1 3 33 66666 3 0 6 2 1 8 11 11 4 11 0000 5 8 11 8 8 8 8 00000 8 8 8 8 444 111 0 6 6 6 6 00 111 8 44 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 4444 0 111 6 1 4 99 5555 99 0 4 777777777777777777777777777777777777777777777777777777777 0 4 6 33 5 7 555 1 5 33 5 555 5 6 666666666666666666666666 444444 5 3 5 5 333 1 6 00 1 888 1 5 5 4 1 4 4 2222222222222222222222222222222222222222222222222222222222222 5 4 5 5 5 5 5 5 5 5 88 5 777 00000 5 11111 0 2 5 5 4444 5 4444444444 5 111 5 9 00000 1 8 3 77 0 77 555555 4 5 33 5 66 5 000 5 333 5 1 88888 2222 5 66 5 99 5 5 5 444 5 5 55555 5 5 5 77 5 5 1 5 5 5 66 5 5 33 5 0 5 1 5 5 5 1 5 5 666666 5
lowQualScore : . . . .. . . .. . . . ............... . .. . . . ........... . .... . . . . ............................................ .. . ... . . ..... . . .. . . .. ..... . . . . . . .. .. . .. .... . . .. . . . . ..... . . . . ... ... . . . . . .. ... . .. ............................................................................................... . .... . ... . . . .. .... .. . . ......................................................... . . . .. . . ... . . .. . ... . . ........................ ...... . . . . ... . . .. . ... . . . . . . . ............................................................. . . . . . . . . . . .. . ... ..... . ..... . . . . .... . .......... . ... . . ..... . . . .. . .. ...... . . .. . .. . ... . ... . . ..... .... . .. . .. . . . ... . . ..... . . . .. . . . . . . .. . . .. . . . . . . . . . . ...... .
lowQualScore : 0 0 7 11 7 3 99 7 3 7 000000000000000 7 99 4 4 7 66666666666 7 6666 7 1 5 7 88888888888888888888888888888888888888888888 88 0 888 0 0 22222 5 5 22 4 0 88 88888 2 0 0 8 0 0 00 00 6 00 0000 0 0 00 0 0 0 0 00000 0 0 0 0 000 000 8 7 7 7 7 22 888 0 00 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 2222 7 777 7 7 3 44 4444 33 1 3 000000000000000000000000000000000000000000000000000000000 7 3 7 11 7 1 999 4 7 66 7 000 7 0 999999999999999999999999 555555 7 3 7 7 333 4 0 00 4 333 4 0 0 4 1 4 4 6666666666666666666666666666666666666666666666666666666666666 0 4 0 0 0 0 0 0 0 0 99 0 111 11111 7 44444 7 3 7 9 4444 7 4444444444 7 666 7 6 00000 4 7 0 99 1 99 333333 3 7 11 7 00 7 000 7 777 7 4 99999 1111 7 44 7 22 7 7 7 999 7 7 99999 7 7 7 44 4 7 7 7 7 7 44 7 7 99 7 2 0 7 7 0 7 4 7 7 444444 7
consensus : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TA---------------T-TTT--CGCGGGAATT----------A-GAAGG--AA-ATC-ANAA-T-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGAT--ATACA-TAATTATATA-ATTTAAAAAACTAAAATTGA-G--ATGCT--GATAGTGACA--TATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATG-CCCTTTTCNAA-ATTCTTGAAGAAA--AAAAAACTA-AA-NTCACATACATNA-AACCTAAGTA-AAATNT--GACAACAATAC-AGATC----------TA---------------TTCTTCTC----AAATTCT-TTAA-CTTACCCCAACAGCCGTCC-ATGCCGCTCGTC-GTCATTCCTTG-CCCTAGCT---------CT-TGATCCCTTGTCA-C--G---------C----G---CTCGTCACCCGTTGCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-CGTC-NACAA-AT--AGTGT-CTTCTATT-C---TC-AATTTA-TCAATCAA-TCAT-C-T--GT-TCTCT-TCA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG------------C--------------A--GCG-TT-C----AATCCT-------------TATGGCGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC-GTCNC---TGCAACTATACA-TTNCT--TTGAATTT-GTT--GA----A-AAAATCT-A-TTAT-----GCTTT-GCCTTTTCNAACTT--AAAAT--GTT-NCN--AGAAT-GAATTT-TGGA-AG---TG-GCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACTCGA-AA-GC-TC-T--A-AA-AAGAAAC-CGC-GGTAA-ACAACATT-CC-GGC-TG-TTC-TA-CCC-AGT-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AA------TTG-TATTATTAA
Reference ( gi|4 ) : TACAT-ATGC-TATG-TATTTTCCTT-GA-TAAAA--TG-TAATGAAAATATAG-AG-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGATGAGAA-CCCC--ATCA-CCAGATTGAAATGGCGCAAGAA-TA---------------T-TTT--CACAGGAATT----------A-GAAGG--AA-ATC-AGAA-T-AC--A--TGTGGGGATTAAGGAT--ATAATTTAGGGTAGAT--ATACA-TAATTATATA-ATCTAAAAA-CTGAAATTGA-G--ATGCT--GATAGCGGCA--TATG--TCTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATA-CCCTTTTTAAA-ATTCTTGAAGAAAGAAAAAAACTA-AA-TTCACATACATAA-AACCTAAGTA-AGATAT--GACAACAATAT-AGGCC----------TA---------------TTCTT-TC----AGATTCT-GAAA-CTTACCCTACCAGCCGTCC-GTGCCACTCGTT-GTCATTCCTTG-TTCTAGCT---------CT-TGATCCCTTGTCA-CAAA---------C----A---CTCGTCACCCGTTGCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-CGTC-CACAA-AG--AGTGT-CTCCTATT-C---AC-AATTTA-TCAAGCAG-TCAT-A-T--GT-TCACT-TTA-CTTT-GT-CGACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG------------C--------------A--GCA-TT-C----AATCCC-------------TATGACGGTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--G--AATAC-GTCCC---TGCAACTATACA-TTACT--TCGAATTT-GT---GA----A-AAAATCT-A-TAAT-----GCTTT-GCCTTTTCCAACTT--AAAAT--GTT-TTA--AGAAT-AAATTT-TGGA-AG---TG-ACAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACTCTA-AA-GC-TC-T--A-AA-AAGAAAC-CGC-GGTAA-ACAACATT-CC-GGC-TG-TTC-TA-CCA-AAT-TTGCAT-TCACCCCAATTTAGTTGT-TAAA-AATGAT-AAA-TTTG-AA------TTG-TATTATTAA
gi|1 : TACATTATGCCTATGCTCATTTCCTT-GA-TAAAAATTG-TAATGTAAA-ATAG-AATAAG--TTTTTTTTGTATT-AAGAATATCCAATAACCACAAACACAGATGAGAAACCCC--AT-A-CCAGATTGAAATGGC-CAAGAA--A---------------TATTT--CAC-GGAATT----------AAGAAGG--AACATCCAGAA-T-AC-----TGTGGGGATTAAGGAT--ATAAATTAGGGTAGAT--ATACA-TAATTATATACATCTAAAAAACTGAAATTGATG--ATGCTCTGATAG-GATC--TATGATCCTAAAAAG-AT-AACAAAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AAGC-ATA-CA-AACTAAT---GAGC-CCTTCAACGAT-TACA-CAATA-CCCTTTTTAAA-AT-CTTGAAGAAA--AAGAAACTA-AA-T-CAC-TACATTA-A-CCTAAGTA-A-AT-T--GACAA-AATAC-AGATC----------TAAACCAGCAAAATATATTCTTCTC----AGATTCTTGAAATCTTACCTCACCAGCCGTCCCGTGC-ACTCGTTTGTCATTCCTTG-TTCTAGCT---------CT-TGATCCCTTGGCA-C------------CTTTTG---CTCGTCACCCGTTGCTGGCGCGTCACTTAG-CC-TTG-A-AA-CCT-CAGT-CACAA-ACT-AGTGT-CTTCTATTTC---A--AATCT--TTAATCCA-TCAT-CCT--GT-TCTTT-TTA-CTG--GTACAACG-TTCAACAGATTAC-ACACTTTAA-CTTCAAGTGAACACGAA-ATG------------C--------------A--GCA-TTTC----AATCCT-------------AATGACGGTCA-A-CGACC-GAAATCACT-GCGTTC-ATCT-ACAATCTAAT-G-T--GACG--G--AATACCGTGCCACATGCAACTAT-CA-TTACT--TCGAATTT-GTTACGA----A-AAAATCT-AATAAT-----GCTTTCGCCTTT-CCAAGCT--AAAATTGGTT-TTA--AGAAT-AATTTTGTGGACAG---TG-GCAAAA-A-GTAAAAACATTT-ATCT--C--TTCCTTCTGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACTCTA-AA-GC-TC-T--A-AA-AAGGAAC-CGC-GG-AA-ACAACATT-CC-GGC-TGTTTC-TA-CCAGAAT-TTGCAT-TCACCCCAATTTAGTTGT-TAAAGAATGATAAAA-TTTGAAA------TTG-TATTATTAA
gi|11 : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATT-AA--ATATCCAATAAC-ACAA------ATGAGAA-CCGC--ATCA-CCAGATTCAAATGGCGCAAGAA-TACTTTTGTGTTGATTTT-TTT--CACAG-----------------GAAGG--AA-GTC-ATAA-T-ACTAA--T---AAGATTAAGGAT--ATAATTCAGGGTAGAt
gi|15 : tTACAT-ATGC-TATG-TATTTTCCTT-AAATAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATTAAA--ATATCCAAT-AC-A-----ACAGACGAGAA-CCGC--ATCA-CCAGATTCAAAT
gi|23 : tTACAT-ATAC-TATG-TATTGTCCTT-AA-TAACA--TG-TAATGAATATATAG-
gi|3 : aatATG-TATTTTCCTT-AA-AAACA--GG-TAATGAATATATAG-A--------------------------------ATAGC-A------CAGACGAAAA-CCGC--ATCA-CCAGATATAAATGGCGCAAGAA-TA---------------G-GTT--TGTGGTAATTTTTTTTCACAA-GGAGA--AA-ATC----A-T-A---A--TGTTGGGATTAAGGAT--ATATTTCATAGTAGAT--ATACA-----TATATA-ATTTAAAAA-CTAAAATTGA-G--ATGCT--TATAGTGACA--TATG--TGTAAACGGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ACA-CA-AACTAAT---GA-C-CC-TCA-CG-T-TACA-CAATG-TCCCTTTCTAA-ATTTTTGATG-----AAAAAACTA-GA----AC-TACATAATAGCC--ACTACAAATCT--AAAAGCAA-A-----------------TA---------------TTCTTATC----AAATTCT-TTAA-CTTACCTCAACAACAGTCC-ATG----TCGTTCGTCATTTCTTGACACCACCTGATTGCACGCC-TGAT---TTTTCA-TTAGGGCCTACTTC----C---CTTGTCACT--TTGCT--CG--TCAC-----CCGTT-------CCT-TGTG-CTCAGCAGCTAGTAT-CGTCAATT-C---TC-AA---A--CAAATAATTCATCA-TCTGG-TCTCT-TCA-TTGA-GT-CAACT-TTCAACA-TTTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG------------C--------------A--GTG-CT-CCG--AATTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-ATT--AACG--T--AATGC-GTCAC---TGCATCTTTACATTTACT--T-GAATTT-GG---GAAAT-A-AAAAT-T-A-TTAT-----GCTTT-GCTTTTTCAAATTA--AAAAT--GTTACTA--A-ATT-GAATTT-T-GA-AG---TG-GTAAAA-G-GTCAAT-CATTT-TTTTTCT--TTC----TGAAATATA-AAA-ATCC-AGTACTA--CAT-TC-T-TTACTCGA-AA-GT-TA-T--A-AA-AAGAAAA-CAC-AGAAA-ACACTATT-CT-GAC-TG-GTG-TA-CCC-AGT-CTGTAT-TCACACCAATTCAGTTGT-TAAA-AATGAT-AGC-TTTT-AA------TTG-TATTAga
gi|6 : TG-TATTTTC-TT-AA-TATCA--TGCTAATGAATATATAGCAA-AAG--CTT-----GTATT-AA--AT--CCA-TAA--ACAA-CA-----GAGAA-CCGCGAATCA-CCAGATC-AAATGGGCCAAGAA-TA---------------C-TTT--gcaataaaaaatactctctggaaatgtaaatataagcaatga
gi|2 : atgcccctatcATTTTCCTTTGA-TAAA---TG-TAATGAATCTATAG-AA-AAAGCTTTTTTT-GTATA-AA--CTATCCAA---C-ACAG-CA----TGAGAA-CAC---ATCAACCAGATTGAAATGGCGCCAGAAATA---------------T-TTTTACACAGGGAAT----------A-GAAGGGGAA-ATC-ATAA-TTAC--AA-TGTGGGGATTAAGGATTAATAATTCAGGGGCGGTTCATATT-TAATT-------TTTAAAAA-CTAAATTTGA-GGGATGCT--GATACAGGCACATATG--TGTAAAAAGCATTAA--AAAGC--ATGTTTTGCTGCA-TTTTTAC-A-----AA-C-ATAACA-AA-TAAT---GG-GACCTTCA-CG-T-TACA-CAATG-CCTTTT---AA-ATTCTTGAA------AAAAATCTACAACTTCACATA-ATTA-A-CCTAAGTC-AAATATTGGGCAACAATATGAGATCAAAACAAATATA---------------TTCTT-TTTCAGAGATTCT-GAAA-CTTACCCTACCAGCCGTCC-ATGCCG-TCGTC-GTCATTC-TTG-CTCT-GCT---------CTATAATCCATTGTCA-CCTT---------T----G---CTTGTCACCCGTTGCTTAGGC-TCACTTAGGCCATTGGA-AAACCTGCGTC--ACAA-AT--AGTGT-CTTCTATT-T---TC-AATTTAATC---CA--TCAT-C-T--GT--CTCTGTTA-CTGT-GT-CAA-------ACA-GT-AC-AC-CTTTTA-CTTCA-GTGA-CACGAAAGTG------------CC-------------A--GCAGTT-C----AATCC--------------TATGACGCTCA-AACGACC-GAA-TCACT-GCG--C-AT-T-ACAATCTACTTG-T--GACGTAA--AATAC-GTCCC---TG-AACTATGCA-TTTCTCATTGAATTTCGTT--GAC---A-AAAATCTGA-TTATC----GCTTTCGCCTTT-CTAACTT--AA-------T-TTACTAGAAG-AA--TT-TGAA-GA---TGGACAAAA---GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAT-CTCCTAGCACTATCCAT-CCAT-TCACTCGACAA-GCATC-TTAA-AATAAGAAAC-GGCCGGTAATACAACATA-CC-GGC-TC-TTC-TA-CCC-AAT-TTG-ATATCACCCTAATTCAGTTGT-AAAA-AATGATAAAA-TTTG-AA------TTG-TATTATTAtgtgctaatttttttttcatcatttggggattaaggatatatttcagggtagatatacaatacatatataatttaaaagctaaaattgagatgctgatagtggcataagtgtaaaaagcatatagagccaatgtttgctgcattttacaaactgaacatacaaactaatgacccttcacgttacacaatgccccgttctaaattcttgcagaaaaaaataaaatccccaaaaaacctacatatctaaaagcaagtattcttctcaaatcctttaacttacaccaacaactgtccatgccgctcgtcattccttgccctagatcacttgtcatcgtgctcgtcacccgttcctggcgctcacttagccttgaaaacctcgtcaacacataatgtcgtctattttcaaagaattaatccatcat
gi|20 : atagctatcatcg--ATATCCAATAAC-ACAA--ACA----AGAA-CATC--ATCA-CCAGATCAAACTGGCGTAAGAA-TA---------------cataaaaatttactctcttgaaatgtaaca
gi|12 : aaacagaaataccaaattg-AGAAGT-AC--AATTGTTGGGATTAAGGAT--ATcgtatatggcaaccttt
gi|6 : cacaC--A--TTTGGGGATTAAGGAT--ATATTTCAGGGTAGAT--ATACAATACATATATA-ATTTAAAAG-CTAAAATTGA-G--ATGCT--GATAGTGGCA--TAAG--TGTAAAAAGCAT-AT--AGAGCCAATGTTT-GCTGCA-TTTT-AC-AAACTGAA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATG-CCCCGTTCTAA-ATTCTTGCAGAAAAAAA-----TA-AA-ATCCC---CAAAA-AACCTACAT----ATCT--AAAAGCA-----AG-------------TA---------------TTCTTCTC----AAATCCT-TTAA-CTTACACCAACAACTGTCC-ATGCCGCTC----GTCATTCCTTG-CCCTA----------------GATCACTTGTCATC--G---------T----G---CTCGTCACCCGTTCCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-CGTC-AACAC-AT--AATGT-CGTCTATT-T---TC-AAttctaaaaaactaaactttagatgctcatagtgacatgtgtaaaaagaataaagaatcaatgtttgctgcatttttacaaaacaatacataacttatataaaccctttatgtatacaccaatgcccttcggaaatactacataacaaaattgcaga
gi|12 : atgcccctatctgtattttcttaatatcatgctaatgaatatatagcaaaagcttgtattaaatccataaacaacagagaaccgcgaatcaccagatcaaatgggccaagaatacttttgtgctaatttttttttcatTCTAAAAAACTAAACTTTA-G--ATGCT--CATAGTGACA--TGTG--T--AAAAAGAAT-AA--AGAATCAATGTTT-GCTGCATTTTT-ACAA-----AA-CAATA-CATAACTTATATAAA-C-CCTTTA-TG-TATACACCAATG-CCCTTagaattaatccatcat
gi|9 : cacaagaagtacaattgttgggattaaggatattA-CA-T-TACA-CAATGTCCCTTTCTAAAGATT--TGAAGGAA----AAAACGA-AA-ATCATATA-------ACCAAAGTA-A-ATAT--GACAACAGTGC-AGGTC----------TAAAAGCAAACA-----TTCTTCTC----AAATTCT-TTAA-CTTACCCCAACAACCGTCC-ATGTCG---GTC-GTCATTCCTTG-------CC---------CT-GAATCCCTTGT-----AG---------C----ATTGCTTGTCACCCGTTCCTTGCGC--CA----------TG-A-AAACCT-CTTC-AACAA-AT--AGTGT-CTTCCATT-C---TC-AAAGTA-TTAATCCA-TCAT-C-T--GT-TCACT-TCA-CTAG-GT-TAACG-TTCAGC--ATTAC-AC-cggaaatactacataacaaaattgcaga
gi|18 : ----------TA---------------TTCTTCTC----AAATTCT-TTAA-CTTAACCCAACAACCGTCC-ATGTCGCTCGT----CATCCATTG-CCCTAG----------------ATCCCCTGTTA-C------------CTT--G---CTCGTCACCCGTTCCTGaa
gi|17 : TACCAGCCGTCC-ATGCCGCTCGTC-GTCAT-------------------------------CCCTTG--------------------------CTCGTCACCCGTTGCTGGCGC-TCATTTAG-CC-TTG-A-AAACAT-CGTC-AACAA-AT--AGTGT-CTTCTATT-T---CC-AA
gi|5 : ATTTAG-CCCTTA-ACAAACTT-CGTCACACAA-AT--AGCGTTCTTCTATT-TTATACTAATT----CAATCAA-TCAT-C-T--GTATCTCT-TTAACTGT-GTACAACGCTTCAACA--TTACCAC-CTTTAA-CTTCAA-T-A-CACGAA-GTG------------C--------------A--GCA-TC-C----AAATCC-------------TATGACGCTCATA-CGACCCGAA-TCACT-GCGT-CGAT-T-ACAATCTAC--G-T--GACC--GCTAATAC--TTCC---TGCAACTA-GCA-TTTCT--TTGAATTT-GTA--GA----ACAAAATCT-A-TTAT-----GCTTT-GCCTTTATCAACTT--AAAAT--GTT-ACT--AGAAT-GAA-TT-TGAA-AAAGTTG-ACAAAA-AGGTAAAA-CATTTCATCT--T--TTC----T-TAATATA-AGATCTCT-AGCACTA--TATGTC-TCTCACTCGA-AAGGC-TC----G-AA-AAGAAACGCGC--GTAA-ACAA-ATTACCGGGC-T--TTC-TA-CCC-AAT-TTGCAT-TCA-CCCAA-TCATTTGT-T-AA-AATGAT-AAATTTTG-AA------TTGTTATTATCAA
gi|7 : CAG-TCAT-C-T--GG-TCTCT-TCA-TTGA-GT-CAAC--TTCAACT--TTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG------------C--------------A--GTG-CT-CG---AATTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-A-TTAAACG--T--AATGC-GTCAC---TGCATCTTTACA-TTACT--T-GAATTT-G----GAGAATA-AAAAT-T-A-TTAT-----GCTTT-GC-TTTTCAAATTA--AAAAT--GTTACTA--A-ATT-GAATTT-TG-A-AG---TG-GTAAAA-G-GTCAAT-CATTT-TTTT--TCTTTC----TGAAATATA-AAA--TCC-AGTACTA--CAT-TC-T-TTACTC-G-AA-GT-T--T--A-TA-AAAAAAA-CAA-AGAAA-ACACTATT-CT-GAC-TG-GTG-TA-CCC-AGT-CTGTAT-TCACACCAATTCAGTTGT-T-AA-AATGAT-AGC-TTTT-AA------TTG-TATTAttaagaaatctataactgctcttgaaaatgtaaatcataagcatgaattatatttttggatgtgcacttgtgtccataatacggatggggctgttctgacaatttccttcattacggccgctaacgccgcgttattcaaattgtcagaacaatcccgtccgtgttatgaccacaatgcacatccacaaatattaattcagattacttaaatgaatgag
gi|8 : t-TCTCT-TTA-CTGGAGT-CAACG-TTT--CA-A---C-AC-CTTTAAACTTCAAGC------------------------------------------------C-C----AATCCCA------------TATGACG-CCA-A-CGACC-GAA-TCACTTGCGT-C-AT-TTACAATCTACT-G-T--GACGT-G--AATA--GTC--------AAGTATACA-TTTCT--CTGAATTC-GTT--GA----A-AAAAT---A-TAATTATGGGCTTT-GCCTTTTCCAACTTTAAAGAT--GTT-ACT--AGAATTAAATTT-TGGA-AG---TG-ACAAAATA-GTAAAA-CATTGGATCT--T--TTC----TGTAATATATAAA-CTCC-A-CACTA--TAT-TC-T-TCACTCCG-AA-AT-TCTT--ATAA-AAAAAAC-CGC-GGTAA-ACAACATT-TC-GGCTTG-TTTATACCCA-GATGTTGCAT-TCACCCCAATTCAGTTGTCTAAA-AATGAT-AAA-TTTG-AA------TTG-TATTATTAAgcaataaaaaatactctctggaaagt
gi|19 : tc-AC-CTTTAA-CTTCAAATGT-CACGAA-GTG------------TCGTGCTTTCGACATA--GCA-TT-C----AA-----------------TATGGCGTTC------------A-TTACC--CGT-C-GT-C-A-AATCTA---G-T---AC---G--AATAtaaaaatcttacctctctgtatttgtaaatagaaagcat
gi|21 : tttgcctttTTTAA-CTTCAAGTGA-CACGAA-GTT------------CATTTTCCGACAT--A--GCA-TC-C----AA-----------------TATGGCGCTCA-
gi|10 : TAA-CTTTAAGTGA-CACGAA-GTGTCATGGCTTCGAC--------------ACTGCA-TT-CTTGAAAT-----------------ATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--T--AATAC-GTCAC---TGCAACTATACA-TTTCT--TTGAATTT-GT---G-----A-AAAATCT-A-TTAC-----GCTTT-GCCTTTTCAAACTT--AAAAT--CTT-ACT--AGAAT-AAATTT-C-GA-AG---TG-ACAAAA-A-CTAAAA-CGTTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCActctgacatgtcacttgcaaatgtcacacaa
gi|22 : -TC-T-TCACTCGA-AA-GT-TA-T--A-AA-AAGAAAC-CGC-GGTAA-ACAACATT-TC-GGG-TG-TTC-TA-CCC-AGT-TTGCAT-TCACCCCAA
gi|2 : GCAT-CC-CTCAAATTTAGTTTT-TAAA-AAT--T-AAA-TATG-AACCGCCCCTG-AATTATTAA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): AATATATAAAACAAGGCTCAAGAATTAATATTGTTGGATGTGCATTGTGTCAATCATAACACAGACGGGATGTTCTGACAATTTGAATAACGCACGTTAGTGTCAACTAGTGCATTATGAAAAATTGTCAGAACAGCCNNNNNNNNNNNNNNNNNNNNNNNCAATGTATATTCAT
Unaligned ( gi|14 ): TATTTGTGGATGTGCATTGTGTCAATTAACACAGACGGGATGTCTGAAATTTTTTCATAACGGCGCTGACGCGATGATTCAAATTGTCAGAACATCCCGTCTGGTTATGACACAA
Unaligned ( gi|16 ): TTCTCAAATTCTTCAACTTAGCCCTTGAACCATTCGTCATTCCTTGCCACCACCGGATTGCACGCCCGATTTGTCAATACGGTCTAGTTCCTTTGTCATCTTGCTC
Alignments
lowQualScore : 111 3333333 11 1 111111 777777777777 11111 1 11111 111 11111 11 2222222 8888888888888888888888888888888888888 1111111 6666666666666666666666666666666666666666666 1 11 1111111 11 1 111 9999999999999999999999999999999999999999999999999999999999999999999 11 11111 1 222222222222 1 111 1111 111 1 1111 11 1
lowQualScore : 8 8 5 5 5 66 5 5 5 888 1 5 5 66 0 0 5 5555555 2 5 1 66 5 00 0 1 0 333333 999999999999 99 6 6 1 777 99999 0 0 77 0 0 8 0 66 0 88 1 1 6 99 99 99 5 99 2 6 99 6 6 6 6 66666 6 6 6 6 111 777 5 5 5 5 3 3 22222 00 6 777 7 3333333 3 99 7 1 99 1111111111111111111111111111111111111 1 888 2 66 888 4 77 4 4444444 55 8888 777 3333333333333333333333333333333333333333333 2 5 3 5 0 5 5 1 5 5 77 5 5 4 7777777 6 5 5 5 5 00 0 77 0 333 0 4 4 4 4 4 2222222222222222222222222222222222222222222222222222222222222222222 4 4 4 4 4 4 4 4 4 11 4 66 66666 888 0 5 0 1 66 0 5 222222222222 5 5 5 5 5 66 0 2 1 000 66 1 1 77 7777 5 333 5 5 5 0 66 66 0000 5 5 5 77 5 5 5 5 5 5 5 1 66 5 5 2 5 5 3 5 0 5 5 5 5 5 11 5 0 5 5 5 5 1 5 5 5
lowQualScore : . . . . . .. . . . ... . . . .. . . . ....... . . . .. . .. . . . ...... ............ .. . . . ... ..... . . .. . . . . .. . .. . . . .. .. .. . .. . . .. . . . . ..... . . . . ... ... . . . . . . ..... .. . ... . ....... . .. . . .. ..................................... . ... . .. ... . .. . ....... .. .... ... ........................................... . . . . . . . . . . .. . . . ....... . . . . . .. . .. . ... . . . . . . ................................................................... . . . . . . . . . .. . .. ..... ... . . . . .. . . ............ . . . . . .. . . . ... .. . . .. .... . ... . . . . .. .. .... . . . .. . . . . . . . . .. . . . . . . . . . . . . . .. . . . . . . . . . .
lowQualScore : 0 0 7 0 0 99 0 0 0 444 4 7 7 99 1 1 0 0000000 2 0 4 99 0 88 7 4 7 555555 222222222222 22 7 7 0 111 44444 7 7 99 8 8 0 8 88 8 88 7 7 7 22 22 22 7 22 5 7 22 7 7 7 7 77777 7 7 7 7 777 555 7 7 7 7 3 5 88888 77 7 777 3 0000000 5 88 3 0 22 7777777777777777777777777777777777777 4 888 4 99 888 4 44 4 4444444 22 9999 888 5555555555555555555555555555555555555555555 5 7 4 0 0 0 0 4 0 0 55 0 0 2 1111111 0 7 0 0 0 99 0 55 1 888 1 4 4 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777 0 4 4 4 4 4 4 4 4 77 4 11 88888 888 8 0 9 0 99 9 0 444444444444 6 0 0 0 0 99 0 2 0 555 99 0 0 22 6666 0 888 0 0 0 0 99 99 6666 0 0 0 99 0 0 0 0 0 0 0 4 99 0 0 5 0 0 6 0 2 0 0 0 0 0 99 0 2 0 7 0 7 4 7 7 7
consensus : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTT----A-GAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATAC-ATANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTA-AAAT-CACATACAT-AAACCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCA-C----CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNAT-TAATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTT--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-AG-TAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
Reference ( family-4565 ) : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGGAATT----------A-GAAGG--AA-ATC-ANAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATAC-ATAATTATATA-ATTTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCTTTTCNAAATTCTTGAAGAAA--AAAAAACTA-AANT-CACATACATNAAACCTAAGTA-AAATNT--GACAACAATAC-AGATC----------TA---------------TTCTTCTC---AAATTCTTTAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCA-C-G--C----GCTCGTCACCCGTTGCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCN-ACAAA-TAGTGT-CTTCTATTCTCAATTTAT-CAATCAATCATC-TGT-TCTCT-TCA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGGCGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCNC-TGCAACTATACATTNCT--TTGAATTT-GTT--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTNCNAGAAT-GAATTTTG--GA-AG---TGGCAAAA-AG-TAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
gi|1 : TACATTATGCCTATGCTCATTTCCTT-GA-TAAAAATTG-TAATGTAAA-ATAG-AATAAG--TTTTTTTTGTATT-AAGAATATCCAATAACCACAAACACAGATGAGAAACCCC--AT-A-CCAGATTGAAATGGC-CAAGAAATATTT-CAC---GG-AATT----------AAGAAGG--AACATCCAGAAT-AC-----TGTGGGGATTAAGGAT--ATAAATTAGGGTAGATATAC-ATAATTATATACATCTAAAAAACTGAAATTGATG--ATGCTCTGATA--G-GATCTATGATCCTAAAAAG-AT-AACAAAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AAGC-ATA-CA-AACTAAT---GAGC-CCTTCAACGAT-TACA-CAATACCCTTTTTAAAAT-CTTGAAGAAA--AAGAAACTA-AA-T-CAC-TACATTAA-CCTAAGTA-AA--TT--GACAA-AATAC-AGATC----------TAAACCAGCAAAATATATTCTTCTC---AGATTCTTGAAATCTTACCTC---ACCAGCCGTCCCGTGC-ACTCGTTTGT-------CATT-CC---TTGT---TCTAGCTCT-TGATC----CCT--------TGGCA-C----CTTTTGCTCGTCACCCGTTGCTGGCGCGTCACTTAG-CC-TTG-A-AA-CCT-CAGTC--ACAAACTAGTGT-CTTCTATT-TCAAATCTT-TAATCCATCATCCTGT-TCTTT-TTA-CTG--GTACAACG-TTCAACAGATTAC-ACACTTTAA-CTTCAAGTGAACACGAA-ATG--------------C------------A--GC-ATTTC--AA--------TCCT-------------AATGACGGTCA-A-CGACC-GAAATCACT-GCGTTC-ATCT-ACAATCTAAT-G-T--GACG--G--AATACCGTGCCACATGCAACTAT-CATTACT--TCGAATTT-GTTACGA---A--AAAATCT-A-ATAAT-G--CTTTCGCCTTTCCAAGCT---AAAATTGGTTTTAAGAAT--AATTTTGTGGACAG---TGGCAAAA-AG-TAAAAACATTT-ATCT--C--TTCCTTCTGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGGAACCGC-G-G-AA-ACAACATT-CC-GGC-TGTTTC-TA-CCAGAAT-TTGCAT-TCACCCCAATTTAGTTGT-TAAAGAATGATAAAA-TTTGAAATTG-TATTATTAA
gi|10 : TAA-CTTTAAGTGA-CACGAA-GTGT-------------C------------ATGGC--TT-C--GACACTGCATTCTTGAAA---------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--T--AATAC---GTCAC-TGCAACTATACATTTCT--TTGAATTT-GT----G---A--AAAATCT-A-TTA-C-G--CTTT-GCCTTTTCAAACTT--AAAAT--CTTACTAGAAT-AAATTTC---GA-AG---TGACAAAA-AC-TAAAA-CGTTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCAt
gi|11 : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATT-AA--ATATCCAATAAC-ACAA------ATGAGAA-CCGC--ATCA-CCAGATTCAAATGGCGCAAGAA-TACTTTTGT---GTTGATTTTTTTCACA-G-GAAGG--AA-GTC-ATAAT-ACTAA--T---AAGATTAAGGAT--ATAATTCAGGGTAGA
gi|12 : tAGT-AC--AATTGTTGGGATTAAGGAT--AT
gi|12 : cacaagaTCTAAAAAACTAAACTTTA-G--ATGCT--CATA--GTGACAT--G--TGTAAAAAGAAT-AA--AGAATCAATGTTT-GCTGCATTTTT-ACAA-----AA-CAATA-CATAACTTATATAAA-C-CCTTTA-TG-TATACACCAATGCCCTTttctaaaaaactaaactttagatgctcatagtgacatgtgtaaaaagaataaagaatcaatgtttgctgcatttttacaaaacaatacataacttatataaaccctttatgtatacaccaatgcccttcggaaatactacataacaaaattgcaga
gi|15 : cacaagaagtacaattgttgggattaaggatattTACAT-ATGC-TATG-TATTTTCCTT-AAATAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATTAAA--ATATCCAAT-AC-A-----ACAGACGAGAA-CCGC--ATCA-CCAGATTCAAATcggaaatactacataacaaaattgcaga
gi|16 : tTTCTC---AAATTCTTCAA--CTTAGCCCTTGAA-------CC-AT--------TC-GT-------CATT-CC---TTGC---C
gi|17 : CAGCCGTCC-ATGCCGCTCGTC-GT-------CAT----------------------------C----CCT--------TG---------------CTCGTCACCCGTTGCTGGCGC-TCATTTAG-CC-TTG-A-AAACAT-C-GTCA-ACAAA-TAGTGT-CTTCTATTTCCAAaccaccggattgcacgcccgatttgtcaatacggtctagttcctttgtcatcttgctc
gi|18 : tac----------TA---------------TTCTTCTC---AAATTCTTTAA--CTTAACCC---AACAACCGTCC-ATGTCGCTCGTC-AT-------C----CA---TTGC---CCTA-------GATC----CCC--------TGTTA-C----CTT--GCTCGTCACCCGTTCCTG
gi|19 : -AC-CTTTAA-CTTCAAATGT-CACGAA-GTGTCGTGCTTTCGACAT------------A--GC-ATT-C--AA-------------------------TATGGCGTTC------------A-TTACC--CGT-C-GT-C-A-AATCTA---G-T---AC---G--AATA
gi|2 : tttgcctttATTTTCCTTTGA-TAAA---TG-TAATGAATCTATAG-AA-AAAGCTTTTTTT-GTATA-AA--CTATCCAA---C-ACAG-CAT----GAGAA-C-AC--ATCAACCAGATTGAAATGGCGCCAGAAATATTTTTACACAGGGAAT-----------A-GAAGGGGAA-ATC-ATAATTAC--AA-TGTGGGGATTAAGGATTAATAATTCAGGGGCGGT-T-C-ATATTTA-AT---TTTTAAAAACTAAATTTGA-GGGATGCT--GATACAGGCACATATG--TGTAAAAAGCATTAA--AAAGC--ATGTTTTGCTGCA-TTTTTAC-A-----AA-C-ATAACA-AA-TAAT---GG-GACCTTCA-CG-T-TACA-CAATGCCTTTT---AAATTCTTGAA------AAAAATCTACAACTTCACATA-ATTAA-CCTAAGTC-AAATATTGGGCAACAATATGAGATCAAAACAAATATA---------------TTCTTTTTCAGAGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-ATGCCG-TCGTC-GT-------CATT-C----TTGC---TCT-GCTCTATAATC----CAT--------TGTCA-C----CTTT-GCTTGTCACCCGTTGCTTAGGC-TCACTTAGGCCATTGGA-AAACCTGC-GTC--ACAAA-TAGTGT-CTTCTATTTTCAATTTA----ATCCATCATC-TGT--CTCTGTTA-CTGT-GT-CAA-------ACA-GT-AC-AC-CTTTTA-CTTCA-GTGA-CACGAAAGTG--------------CC-----------A--GCAGTT-C--AA--------TCCT--------------ATGACGCTCA-AACGACC-GAA-TCACT-GCG--C-AT-T-ACAATCTACTTG-T--GACGTAA--AATAC---GTCCC-TG-AACTATGCATTTCTCATTGAATTTCGTT--GAC--A--AAAATCTGA-TTA-TCG--CTTTCGCCTTT-CTAACTT--AA--T---TTACTAGAA--GAATTT----GA-AGA--TGGACAAA-AG-TAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAT-CTCCTAGCACTATCCAT-CCAT-TCACT-CGACAA-GCATCTTAA-AATAAGAAACGGCCG-GTAATACAACATA-CC-GGC-TC-TTC-TACCCAA--T-TTG-ATATCACCCTAATTCAGTTGT-AAAA-AATGATAAAA-TTTG-AATTG-TATTATTA
gi|20 : atagctatcatcg--ATATCCAATAAC-ACAA------ACAAGAA-CATC--ATCA-CCAGATCAAACTGGCGTAAGAA-TAcataaaaatttactctcttgaaatgtaaca
gi|21 : aaacagaaataccaaattgTTTAA-CTTCAAGTGA-CACGAA-GTT--------------CATTTTCCGACATA--GC-ATC-C--AA-------------------------TATGGCGCTCA-cgtatatggcaaccttt
gi|22 : -TC-T-TCACT-CGA-AA-GT-TAT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-TC-GGG-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAActctgacatgtcacttgcaaatgtcacacaa
gi|23 : TACAT-ATAC-TATG-TATTGTCCTT-AA-TAACA--TG-TAATGAATATATAG-GA-
gi|3 : aatATG-TATTTTCCTT-AA-AAACA--GG-TAATGAATATATAG---------------------------------AATAGC-ACA------GACGAAAA-CCGC--ATCA-CCAGATATAAATGGCGCAAGAA-TAGGTTTGT---GGTAATTTTTTTTCACAA-GGAGA--AA-ATC-ATA-------A--TGTTGGGATTAAGGAT--ATATTTCATAGTAGATATAC-A----TATATA-ATTT-AAAAACTAAAATTGA-G--ATGCT--TATA--GTGACATATG--TGTAAACGGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ACA-CA-AACTAAT---GA-C-CC-TCA-CG-T-TACA-CAATGTCCCTTTCTAAATTTTTGATG-----AAAAAACTA-GAAC-TACATA-AT--AGCC--ACTACAAATCT--AAAAGCAA-A-----------------TA---------------TTCTTATC---AAATTCTTTAA--CTTACCTC---AACAACAGTCC-ATGTCGTTCGTC-ATTTCTTGACACCACCTGATTGCACGCCTGATTTT-TCATTAGGGCCTACTTCCCTTGTCA-CTT--T----GCTCGTCACCCGTTCCTTGTGC-TC----AG-C---------AGC----------------TAGTAT-CGTCAATTCTCAAACAAA-TAATTCATCATC-TGG-TCTCT-TCA-TTGA-GT-CAACT-TTCAACA-TTTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CCGAA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-ATT--AACG--T--AATGC---GTCAC-TGCATCTTTACATTTAC--TTGAATTT-G-G--GAAATA--AAAAT-T-A-TTA-T-G--CTTT-GCTTTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTT---GA-AG---TGGTAAAA-GG-TCAAT-CATTT-TTTTTCT--TTC----TGAAATATA-AAA-ATCC-AGTACTA--CAT-TC-T-TTACT-CGA-AA-GT-TAT--A-AA-AAGAAAACAC-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-TAAA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|4 : TACAT-ATGC-TATG-TATTTTCCTT-GA-TAAAA--TG-TAATGAAAATATAG-AG-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGATGAGAA-CCCC--ATCA-CCAGATTGAAATGGCGCAAGAA-TATTTTCAC---AGGAATT----------A-GAAGG--AA-ATC-AGAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTTAGGGTAGATATAC-ATAATTATATA-ATCTAAAAA-CTGAAATTGA-G--ATGCT--GATA--GCGGCATATG--TCTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATACCCTTTTTAAAATTCTTGAAGAAAGAAAAAAACTA-AATT-CACATACATAAAACCTAAGTA-AGATAT--GACAACAATAT-AGGCC----------TA---------------TTCTT-TC---AGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-GTGCCACTCGTT-GT-------CATT-CC---TTGT---TCTAGCTCT-TGATC----CCT--------TGTCA-C-AAAC----ACTCGTCACCCGTTGCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCC-ACAAA-GAGTGT-CTCCTATTCACAATTTAT-CAAGCAGTCATA-TGT-TCACT-TTA-CTTT-GT-CGACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-ATT-C--AA--------TCCC-------------TATGACGGTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--G--AATAC---GTCCC-TGCAACTATACATTACT--TCGAATTT-G-T--GA---A--AAAATCT-A-TAA-T-G--CTTT-GCCTTTTCCAACTT--AAAAT--GTTTTAAGAAT-AAATTTTG--GA-AG---TGACAAAA-AG-TAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCAAA--T-TTGCAT-TCACCCCAATTTAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaatgtaaatataagcaatga
gi|5 : ATTTAG-CCCTTA-ACAAACTT-C-GTCACACAAA-TAGCGTTCTTCTATTTTATACTAATTCAATCAATCATC-TGTATCTCT-TTAACTGT-GTACAACGCTTCAACA--TTACCAC-CTTTAA-CTTCAA-T-A-CACGAA-GTG--------------C------------A--GC-ATC-C--AA--------ATCC-------------TATGACGCTCATA-CGACCCGAA-TCACT-GCGT-CGAT-T-ACAATCTAC--G-T--GACC--GCTAATAC---TTC-C-TGCAACTA-GCATTTCT--TTGAATTT-GTA--GA---AC-AAAATCT-A-TTA-T-G--CTTT-GCCTTTATCAACTT--AAAAT--GTTACTAGAAT-GAATTT-G--AA-AAAGTTGACAAAA-AGGTAAAA-CATTTCATCT--T--TTC----T-TAATATA-AGATCTCT-AGCACTA--TATGTC-TCTCACT-CGA-AAGGC-TC---G-AA-AAGAAA-CGC-GCGTAA-ACAA-ATTACCGGGC-T--TTC-TACCCAA--T-TTGCAT-TCA-CCCAA-TCATTTGT-T-AA-AATGAT-AAATTTTG-AATTGTTATTATCAA
gi|6 : TG-TATTTTC-TT-AA-TATCA--TGCTAATGAATATATAGCAA-AAG--CTT-----GTATT-AA--AT--CCA-TAA--ACAA-CA-----GAGAA-CCGCGAATCA-CCAGATC-AAATGGGCCAAGAA-TACTTTTGT---GCTAATTTTTTTT-----------------TC-AT-----C--A--TTTGGGGATTAAGGAT--ATATTTCAGGGTAGATATACAATACATATATA-ATTT-AAAAGCTAAAATTGA-G--ATGCT--GATA--GTGGCATAAG--TGTAAAAAGCAT-AT--AGAGCCAATGTTT-GCTGCA-TTTT-AC-AAACTGAA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCGTTCTAAATTCTTGCAGAAA--AAAA---TA-AAAT-CCC---CAAAAAACCTACAT----ATCT--AAAAGCA-----AG-------------TA---------------TTCTTCTC---AAATCCTTTAA--CTTACACC---AACAACTGTCC-ATGCCGC---TC-GT-------CATT-CC---TTGC---CCTA-------GATC----ACT--------TGTCATC-G--T----GCTCGTCACCCGTTCCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACACA-TAATGT-CGTCTATTTTCAAAGAAT-TAATCCATCATttaagaaatctataactgctcttgaaaatgtaaatcataagcatgaattatatttttggatgtgcacttgtgtccataatacggatggggctgttctgacaatttccttcattacggccgctaacgccgcgttattcaaattgtcagaacaatcccgtccgtgttatgaccacaatgcacatccacaaatattaattcagattacttaaatgaatgag
gi|7 : atgcccctatcTCAGTCATC-TGG-TCTCT-TCA-TTGA-GT-CAAC--TTCAACT--TTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CG-AA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-A-TTAAACG--T--AATGC---GTCAC-TGCATCTTTACATTACT--T-GAATTT-GGA--GA---ATAAAAAT-T-A-TTA-T-G--CTTT-GC-TTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTTG---A-AG---TGGTAAAA-GG-TCAAT-CATTT-TTTT--TCTTTC----TGAAATATA-AAA--TCC-AGTACTA--CAT-TC-T-TTACT-CGA-AG-TT-TAT--A-AA-AAAAA--CAA-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-T-AA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|8 : -TCTCT-TTA-CTGGAGT-CAACG-TTT--CA-A---C-AC-CTTTAAACTTCAAGC------------------------------------------------C-C--AA--------TCCCA------------TATGACGC-CA-A-CGACC-GAA-TCACTTGCGT-C-AT-TTACAATCTACT-G-T--GACGT-G--AATA----GTC------AAGTATACATTTCT--CTGAATTC-GTT--GA---A--AAAATAT-AATTA-T-GGGCTTT-GCCTTTTCCAACTTTAAAGAT--GTTACTAGAATTAAATTTTG--GA-AG---TGACAAAATAG-TAAAA-CATTGGATCT--T--TTC----TGTAATATATAAA-CTCC-A-CACTA--TAT-TC-T-TCACTCCGA-AA-TT-CTT--ATAA-AAAAAACCGC-G-GTAA-ACAACATT-TC-GGCTTG-TTTATACCCAGA-TGTTGCAT-TCACCCCAATTCAGTTGTCTAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaagt
gi|9 : tcA-CA-T-TACA-CAATGTCCCTTTCTAAAGATTTGAAGGAA--AAAA--CGA-AAAT-CATATA------ACCAAAGTA-AA-TAT--GACAACAGTGC-AGGTC----------TAAAAGCAAACA-----TTCTTCTC---AAATTCTTTAA--CTTACCCC---AACAACCGTCC-ATGTCG---GTC-GT-------CATT-CC---TTGC---CCTGA-------ATC----CCT--------TGTAG-C-A--TT---GCTTGTCACCCGTTCCTTGCGC--CA----------TG-A-AAACCT-C-TTCA-ACAAA-TAGTGT-CTTCCATTCTCAAAGTAT-TAATCCATCATC-TGT-TCACT-TCA-CTAG-GT-TAACG-TTCAGC--ATTAC-AC-taaaaatcttacctctctgtatttgtaaatagaaagcat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATATATAAAACAAGGCTCAAGAATTAATATTGTTGGATGTGCATTGTGTCAATCATAACACAGACGGGATGTTCTGACAATTTGAATAACGCACGTTAGTGTCAACTAGTGCATTATGAAAAATTGTCAGAACAGCCNNNNNNNNNNNNNNNNNNNNNNNCAATGTATATTCAT
Unaligned ( gi|14 ): TATTTGTGGATGTGCATTGTGTCAATTAACACAGACGGGATGTCTGAAATTTTTTCATAACGGCGCTGACGCGATGATTCAAATTGTCAGAACATCCCGTCTGGTTATGACACAA
Alignments
lowQualScore : 111 3333333 11 1 111 55555555555555 11111 22222 111 11111 11 111 2222 1111 888888888888888888888888888888888888 1111111 444444444 1111 11111111 11111111 1 11 111 11 1 111 9999999999999999999999999999999999999999999999999999999999999999999 111 11111 222222222222 1 111 111 111 1 1111 11 1
lowQualScore : 8 8 5 5 5 66 5 5 5 888 1 5 5 66 0 0 5 5555555 2 5 1 66 5 00 0 1 0 111 7 44444444444444 99 6 6 777 99999 0 0 77 0 0 99999 0 88 3 7 6 99 99 99 5 99 2 6 99 6 6 6 6 6 33333 6 6 111 777 5 5 5 5 0 3 22222 00 222 7 9999 6 3 4444 1 99 777777777777777777777777777777777777 1 888 1 66 888 4 5 1 4 4444444 4 8888 777 111111111 0000 88888888 99999999 1 5 3 5 0 5 5 1 5 5 11 5 5 4 111 5 5 5 5 5 00 0 77 0 333 0 4 4 4 4 4 2222222222222222222222222222222222222222222222222222222222222222222 4 4 4 4 4 4 4 4 4 000 4 66 66666 888 3 5 0 0 66 6 5 222222222222 5 5 5 5 5 66 0 2 1 000 66 77 222 5 333 5 5 5 0 66 66 0000 5 5 5 77 5 5 5 5 5 5 5 1 66 5 5 2 5 5 3 5 0 5 5 5 5 5 11 5 0 5 5 5 5 1 5 5 5
lowQualScore : . . . . . .. . . . ... . . . .. . . . ....... . . . .. . .. . . . ... . .............. .. . . ... ..... . . .. . . ..... . .. . . . .. .. .. . .. . . .. . . . . . ..... . . ... ... . . . . . . ..... .. ... . .... . . .... . .. .................................... . ... . .. ... . . . . ....... . .... ... ......... .... ........ ........ . . . . . . . . . . .. . . . ... . . . . . .. . .. . ... . . . . . . ................................................................... . . . . . . . . . ... . .. ..... ... . . . . .. . . ............ . . . . . .. . . . ... .. .. ... . ... . . . . .. .. .... . . . .. . . . . . . . . .. . . . . . . . . . . . . . .. . . . . . . . . . .
lowQualScore : 0 0 7 0 0 99 0 0 0 444 4 7 7 99 1 1 0 0000000 2 0 4 99 0 88 7 4 7 777 2 22222222222222 22 7 7 111 44444 7 7 99 8 8 44444 8 88 5 3 7 22 22 22 7 22 5 7 22 7 7 7 7 7 33333 7 7 777 555 7 7 7 7 4 7 88888 77 777 3 2222 7 5 7777 0 22 333333333333333333333333333333333333 4 888 0 99 888 4 7 1 4 4444444 4 9999 888 000000000 6666 11111111 00000000 0 7 4 0 0 0 0 4 0 0 22 0 0 2 777 7 7 0 0 0 99 0 55 1 888 1 4 4 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777 0 4 4 4 4 4 4 4 4 000 4 11 88888 888 1 0 9 8 99 2 0 444444444444 6 0 0 0 0 99 0 2 0 555 99 22 555 0 888 0 0 0 0 99 99 6666 0 0 0 99 0 0 0 0 0 0 0 4 99 0 0 5 0 0 6 0 2 0 0 0 0 0 99 0 2 0 7 0 7 4 7 7 7
consensus : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTT----A---GAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATACA-TANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-C-----ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCACATA-AT-AA-CCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTN--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
Reference ( family-4565 ) : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTT----A---GAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATACA-TANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-C-----ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCACATACATAAA-CCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTT--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
gi|1 : TACATTATGCCTATGCTCATTTCCTT-GA-TAAAAATTG-TAATGTAAA-ATAG-AATAAG--TTTTTTTTGTATT-AAGAATATCCAATAACCACAAACACAGATGAGAAACCCC--AT-A-CCAGATTGAAATGGC-CAAGAAATATTT-CAC---GG-AATTA---------A---GAAGG--AACATCCAGAAT-AC-----TGTGGGGATTAAGGAT--ATAAATTAGGGTAGATATACA-TAATTATATACATCTAAAAAACTGAAATTGATG--ATGCTCTGATA--G-GATCTATGATCCTAAAAAG-AT-AACAAAAGCCAATGTTT-GCTGCA-TTTT-AC-AAAGC-----ATA-CA-AACTAAT---GAGC-CCTTCAACGAT-TACA-CAATACCCTTTT-TAAAATCTTGAAGAAA--AAGAAACTAAA---TCAC-TACATTAA-CCTAAGTA-AA--TT--GACAA-AATAC-AGATC----------TAAACCAGCAAAATATATTCTTCTC---AGATTCTTGAAATCTTACCTC---ACCAGCCGTCCCGTGC-ACTCGTTTGT-------CATT-CC---TTGT---TCTAGCTCT-TGATC----CCT--------TGGCAC---CTTTTGCTCGTCACCCGTTGCTGGCGCGTCACTTAG-CC-TTG-A-AA-CCT-CAGTCA--CAAACTAGTGT-CTTCTATT-TCAAATCTTT-AATCCATCATCCTGT-TCTTT-TTA-CTG--GTACAACG-TTCAACAGATTAC-ACACTTTAA-CTTCAAGTGAACACGAA-ATG--------------C------------A--GC-ATTTC--AA--------TCCT-------------AATGACGGTCA-A-CGACC-GAAATCACT-GCGTTC-ATCT-ACAATCTAAT-G-T--GACG--G--AATACCGTGCCACATGCAACTAT-CATTACT--TCGAATTT-GTTACGA---A--AAAATCT-A-ATAAT-G--CTTTCGCCTTTCCAAGCT---AAAATTGGTTTTAAGAAT--AATTTTGTGGACAG---TGGCAAAA-A-GTAAAAACATTT-ATCT--C--TTCCTTCTGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGGAACCGC-G-G-AA-ACAACATT-CC-GGC-TGTTTC-TA-CCAGAAT-TTGCAT-TCACCCCAATTTAGTTGT-TAAAGAATGATAAAA-TTTGAAATTG-TATTATTAA
gi|10 : TAA-CTTTAAGTGA-CACGAA-GTGT-------------C------------ATGGC--TT-C--GACACTGCATTCTTGAAA---------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--T--AATAC---GTCAC-TGCAACTATACATTTCT--TTGAATTT-GT----G---A--AAAATCT-A-TTA-C-G--CTTT-GCCTTTTCAAACTT--AAAAT--CTTACTAGAAT-AAATTTC---GA-AG---TGACAAAA-A-CTAAAA-CGTTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCAt
gi|11 : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATT-AA--ATATCCAATAAC-ACAA------ATGAGAA-CCGC--ATCA-CCAGATTCAAATGGCGCAAGAA-TACTTTTGT---GTTGATTTTTTTC----ACAGGAAGG--AA-GTC-ATAAT-ACTAA--T---AAGATTAAGGAT--ATAATTCAGGGTAGA
gi|12 : tAGT-AC--AATTGTTGGGATTAAGGAT--AT
gi|12 : cacaagaTCTAAAAAACTAAACTTTA-G--ATGCT--CATA--GTGACAT--G--TGTAAAAAGAAT-AA--AGAATCAATGTTT-GCTGCATTTTT-ACAAAA-CA----ATA-CATAACTTATATAAA-C-CCTTTA-TG-TATACACCAATGCCCTTttctaaaaaactaaactttagatgctcatagtgacatgtgtaaaaagaataaagaatcaatgtttgctgcatttttacaaaacaatacataacttatataaaccctttatgtatacaccaatgcccttcggaaatactacataacaaaattgcaga
gi|15 : cacaagaagtacaattgttgggattaaggatattTACAT-ATGC-TATG-TATTTTCCTT-AAATAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATTAAA--ATATCCAAT-AC-A-----ACAGACGAGAA-CCGC--ATCA-CCAGATTCAAATcggaaatactacataacaaaattgcaga
gi|16 : tTTCTC---AAATTCTTCAA--CTTAGCCCTTGAA-------CC-AT--------TC-GT-------CATT-CC---TTGC---C
gi|17 : CAGCCGTCC-ATGCCGCT---C-GT-------CGTC-------------------------ATC----CCT--------T-------------GCTCGTCACCCGTTGCTGGCGC-TCATTTAG-CC-TTG-A-AAACAT-C-GTCA-ACAAA-TAGTGT-CTTCTATTTCCAAaccaccggattgcacgcccgatttgtcaatacggtctagttcctttgtcatcttgctc
gi|18 : tac----------TA---------------TTCTTCTC---AAATTCTTTAA--CTTAACCC---AACAACCGTCC-ATGTCGCTCGTC-AT-------C----CA---TTGC---CCTA-------GATC----CCC--------TGTTAC---CTT--GCTCGTCACCCGTTCCTG
gi|19 : -AC-CTTTAA-CTTCAAATGT-CACGAA-GTGTCGTGCTTTCGACAT------------A--GC-ATT-C--AA-------------------------TATGGCGTTC------------A-TTACC--CGT-C-GT-C-A-AATCTA---G-T---AC---G--AATA
gi|2 : tttgcctttATTTTCCTTTGA-TAAA---TG-TAATGAATCTATAG-AA-AAAGCTTTTTTT-GTATA-AA--CTATCCAA---C-ACAG-CAT----GAGAA-C-AC--ATCAACCAGATTGAAATGGCGCCAGAAATATTTTTACACAGGGAAT-----------A---GAAGGGGAA-ATC-ATAATTAC--AA-TGTGGGGATTAAGGATTAATAATTCAGGGGCGGT-T-CA-TATTTA-AT---TTTTAAAAACTAAATTTGA-GGGATGCT--GATACAGGCACATATG--TGTAAAAAGCATTAA--AAAGC--ATGTTTTGCTGCA-TTTTTAC-AAA-C-----ATAACA-AA-TAAT---GG-GACCTTCA-CG-T-TACA-CAATGCC---TTTTAAATTCTTGAA------AAAAATCTACAACTTCACATA-ATTAA-CCTAAGTC-AAATATTGGGCAACAATATGAGATCAAAACAAATATA---------------TTCTTTTTCAGAGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-ATGCCG-TCGTC-GT-------CATT-C----TTGC---TCT-GCTCTATAATC----CAT--------TGTCAC---CTTT-GCTTGTCACCCGTTGCTTAGGC-TCACTTAGGCCATTGGA-AAACCTGC-GTCA--CAAA-TAGTGT-CTTCTATTTTCAA-T--TT-AATCCATCATC-TGT--CTCTGTTA-CTGT-GT-CAA-------ACA-GT-AC-AC-CTTTTA-CTTCA-GTGA-CACGAAAGTG--------------CC-----------A--GCAGTT-C--AA--------TCCT--------------ATGACGCTCA-AACGACC-GAA-TCACT-GCG--C-AT-T-ACAATCTACTTG-T--GACGTAA--AATAC---GTCCC-TG-AACTATGCATTTCTCATTGAATTTCGTT--GAC--A--AAAATCTGA-TTA-TCG--CTTTCGCCTTT-CTAACTT--AA--T---TTACTAGAA--GAATTT----GA-AGA--TGGACAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAT-CTCCTAGCACTATCCAT-CCAT-TCACT-CGACAA-GCATCTTAA-AATAAGAAACGGCCG-GTAATACAACATA-CC-GGC-TC-TTC-TACCCAA--T-TTG-ATATCACCCTAATTCAGTTGT-AAAA-AATGATAAAA-TTTG-AATTG-TATTATTA
gi|20 : atagctatcatcg--ATATCCAATAAC-ACAA------ACAAGAA-CATC--ATCA-CCAGATCAAACTGGCGTAAGAA-TAcataaaaatttactctcttgaaatgtaaca
gi|21 : aaacagaaataccaaattgTTTAA-CTTCAAGTGA-CACGAA-GTT--------------CATTTTCCGACATA--GC-ATC-C--AA-------------------------TATGGCGCTCA-cgtatatggcaaccttt
gi|22 : -TC-T-TCACT-CGA-AA-GT-TAT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-TC-GGG-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAActctgacatgtcacttgcaaatgtcacacaa
gi|23 : TACAT-ATAC-TATG-TATTGTCCTT-AA-TAACA--TG-TAATGAATATATAG-GA-
gi|3 : aatATG-TATTTTCCTT-AA-AAACA--GG-TAATGAATATATAG---------------------------------AATAGC-ACA------GACGAAAA-CCGC--ATCA-CCAGATATAAATGGCGCAAGAA-TAGGTTTGT---GGTAATTTTTTTTCACAA---GGAGA--AA-ATC-ATA-------A--TGTTGGGATTAAGGAT--ATATTTCATAGTAGATATACA-----TATATA-ATTT-AAAAACTAAAATTGA-G--ATGCT--TATA--GTGACATATG--TGTAAACGGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-C-----ACA-CA-AACTAAT---GA-C-CC-TCA-CG-T-TACA-CAATGTCCCTTTCTAAATTTTTGATG-----AAAAAACTAGAA--CTACATA-AT-AG-CC--ACTACAAATCT--AAAAGCAA-A-----------------TA---------------TTCTTATC---AAATTCTTTAA--CTTACCTC---AACAACAGTCC-ATGTCGTTCGTC-ATTTCTTGACACCACCTGATTGCACGCCTGATTTT-TCATTAGGGCCTACTTCCCTTGTCAC---TTT--GCTCGTCACCCGTTCCTTGTGC-TC----AG-C---------AGC----------------TAGTAT-CGTCAATTCTCAAACAAAT-AATTCATCATC-TGG-TCTCT-TCA-TTGA-GT-CAACT-TTCAACA-TTTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CCGAA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-ATT--AACG--T--AATGC---GTCAC-TGCATCTTTACATTTAC--TTGAATTT-G-G--GAAATA--AAAAT-T-A-TTA-T-G--CTTT-GCTTTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTT---GA-AG---TGGTAAAA-G-GTCAAT-CATTT-TTTTTCT--TTC----TGAAATATA-AAA-ATCC-AGTACTA--CAT-TC-T-TTACT-CGA-AA-GT-TAT--A-AA-AAGAAAACAC-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-TAAA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|4 : TACAT-ATGC-TATG-TATTTTCCTT-GA-TAAAA--TG-TAATGAAAATATAG-AG-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGATGAGAA-CCCC--ATCA-CCAGATTGAAATGGCGCAAGAA-TATTTTCAC---AGGAATT----------A---GAAGG--AA-ATC-AGAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTTAGGGTAGATATACA-TAATTATATA-ATCTAAAAA-CTGAAATTGA-G--ATGCT--GATA--GCGGCATATG--TCTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-C-----ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATACCCTTTTTAAAATTCTTGAAGAAAGAAAAAAACTAAAT--TCACATACATAAAACCTAAGTA-AGATAT--GACAACAATAT-AGGCC----------TA---------------TTCTT-TC---AGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-GTGCCACTCGTT-GT-------CATT-CC---TTGT---TCTAGCTCT-TGATC----CCT--------TGTCACAAAC----ACTCGTCACCCGTTGCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCC-ACAAA-GAGTGT-CTCCTATTCACAATTTATC-AAGCAGTCATA-TGT-TCACT-TTA-CTTT-GT-CGACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-ATT-C--AA--------TCCC-------------TATGACGGTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--G--AATAC---GTCCC-TGCAACTATACATTACT--TCGAATTT-GT---GA---A--AAAATCT-A-TAA-T-G--CTTT-GCCTTTTCCAACTT--AAAAT--GTTTTAAGAAT-AAATTTTG--GA-AG---TGACAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCAAA--T-TTGCAT-TCACCCCAATTTAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaatgtaaatataagcaatga
gi|5 : ATTTAG-CCCTTA-ACAAACTT-C-GTCACACAAA-TAGCGTTCTTCTATTTTATACTAATTCAATCAATCATC-TGTATCTCT-TTAACTGT-GTACAACGCTTCAACA--TTACCAC-CTTTAA-CTTCAA-T-A-CACGAA-GTG--------------C------------A--GC-ATC-C--AA--------ATCC-------------TATGACGCTCATA-CGACCCGAA-TCACT-GCGT-CGAT-T-ACAATCTA-C-G-T--GACC--GCTAATAC---TTC-C-TGCAACTA-GCATTTCT--TTGAATTT-GTA--GA---AC-AAAATCT-A-TTA-T-G--CTTT-GCCTTTATCAACTT--AAAAT--GTTACTAGAAT-GAA-TTTG--AA-AAAGTTGACAAAA-AGGTAAAA-CATTTCATCT--T--TTC----T-TAATATA-AGATCTCT-AGCACTA--TATGTC-TCTCACT-CGA-AAGGC-TC---G-AA-AAGAAA-CGC-GCGTAA-ACAA-ATTACCGGGC-T--TTC-TACCCAA--T-TTGCAT-TCA-CCCAA-TCATTTGT-T-AA-AATGAT-AAATTTTG-AATTGTTATTATCAA
gi|6 : TG-TATTTTC-TT-AA-TATCA--TGCTAATGAATATATAGCAA-AAG--CTT-----GTATT-AA--AT--CCA-TAA--ACAA-CA-----GAGAA-CCGCGAATCA-CCAGATC-AAATGGGCCAAGAA-TACTTTTGT---GCTAATTTTTTTT-------------------TC-AT-----C--A--TTTGGGGATTAAGGAT--ATATTTCAGGGTAGATATACAATACATATATA-ATTTAAAAG-CTAAAATTGA-G--ATGCT--GATA--GTGGCATAAG--TGTAAAAAGCAT-AT--AGAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-CTGAACATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCGTTCTAAATTCTTGCAGAAA--AAAA---TAAAA--TCCC-CAAA-AAA-CCTACATA----TCT--AAAAGCAA------GT------------A---------------TTCTTCTC---AAATCCTTTAA--CTTACACC---AACAACTGTCC-ATGCCGCTCGTC-----------ATT-CC---TTGC---CCTAG-------ATC----ACT--------TGTCAT---CGT--GCTCGTCACCCGTTCCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACACA-TAATGT-CGTCTATTTTCAAAGAATT-AATCCATCATttaagaaatctataactgctcttgaaaatgtaaatcataagcatgaattatatttttggatgtgcacttgtgtccataatacggatggggctgttctgacaatttccttcattacggccgctaacgccgcgttattcaaattgtcagaacaatcccgtccgtgttatgaccacaatgcacatccacaaatattaattcagattacttaaatgaatgag
gi|7 : atgcccctatcTCATC-TGG-TCTCT-TCA-TTGA-GT-CAAC--TTCAACT--TTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CG-AA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-A-TTAAACG--T--AATGC---GTCAC-TGCATCTTTACATTACT--T-GAATTT-GGA--GA---ATAAAAAT-T-A-TTA-T-G--CTTT-GC-TTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTTG---A-AG---TGGTAAAA-G-GTCAAT-CATTT-TTTT--TCTTTC----TGAAATATA-AAA--TCC-AGTACTA--CAT-TC-T-TTACT-CGA-AG-TT-TAT--A-AA-AAAAA--CAA-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-T-AA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|8 : tcag-TCTCT-TTA-CTGGAGT-CAACG-TTT--CA-A---C-AC-CTTTAAACTTCAAGC------------------------------------------------C-C--AA--------TCCCA------------TATGACGC-CA-A-CGACC-GAA-TCACTTGCGT-C-AT-TTACAATCTACT-G-T--GACGT-G--AATA----GTCA------AGTATACATTTCT--CTGAATTC-GTT--GA---A--AAAATAT-AATTA-T-GGGCTTT-GCCTTTTCCAACTTTAAAGAT--GTTACTAGAATTAAATTTTG--GA-AG---TGACAAAATA-GTAAAA-CATTGGATCT--T--TTC----TGTAATATATAAA-CTCC-A-CACTA--TAT-TC-T-TCACTCCGA-AA-TT-CTT--ATAA-AAAAAACCGC-G-GTAA-ACAACATT-TC-GGCTTG-TTTATACCCAGA-TGTTGCAT-TCACCCCAATTCAGTTGTCTAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaagt
gi|9 : tcA-CA-T-TACA-CAATGTCCCTTTCTAAAGATTTGAAGGAA--AAAA--CGAAAA--TCATATA-----A-CCAAAGTA-AA-TAT--GACAACAGTGC-AGGTC----------TAAAAGCAAACA-----TTCTTCTC---AAATTCTTTAA--CTTACCCC---AACAACCGTCC-ATGTCG---GTC-GT-------CATT-CC---TTGC---CCTGA-------ATC----CCT--------TGTAGC---ATT--GCTTGTCACCCGTTCCTTGCGC--CA----------TG-A-AAACCT-C-TTCA-ACAAA-TAGTGT-CTTCCATTCTCAAAGTATT-AATCCATCATC-TGT-TCACT-TCA-CTAG-GT-TAACG-TTCAGC--ATTAC-AC-taaaaatcttacctctctgtatttgtaaatagaaagcat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATATATAAAACAAGGCTCAAGAATTAATATTGTTGGATGTGCATTGTGTCAATCATAACACAGACGGGATGTTCTGACAATTTGAATAACGCACGTTAGTGTCAACTAGTGCATTATGAAAAATTGTCAGAACAGCCNNNNNNNNNNNNNNNNNNNNNNNCAATGTATATTCAT
Unaligned ( gi|14 ): TATTTGTGGATGTGCATTGTGTCAATTAACACAGACGGGATGTCTGAAATTTTTTCATAACGGCGCTGACGCGATGATTCAAATTGTCAGAACATCCCGTCTGGTTATGACACAA
Alignments
lowQualScore : 111 3333333 11 1 111 55555555555555 11111 1 11111 111 11111 11 111 11111111 8888888888888888888888888888888888888 111 1111111 444444444 1111 11111111 11111111 1 11 111 11 1 111 9999999999999999999999999999999999999999999999999999999999999999999 111 11111 111111111111 1 111 111 111 1 1111 11 1
lowQualScore : 8 8 5 5 5 66 5 5 5 888 1 5 5 66 0 0 5 5555555 2 5 1 66 5 00 0 1 0 111 7 44444444444444 99 6 6 777 99999 0 0 77 0 0 8 0 44 0 88 1 1 6 99 99 99 5 99 2 6 99 6 6 6 6 66666 6 6 6 6 111 777 5 5 5 5 0 3 22222 00 222 6 33333333 3 99 7 1 99 1111111111111111111111111111111111111 1 888 1 66 888 4 111 4 4444444 4 8888 777 111111111 0000 88888888 99999999 1 5 3 5 0 5 5 1 5 5 11 5 5 4 111 5 5 5 5 5 00 0 77 0 333 0 4 4 4 4 4 2222222222222222222222222222222222222222222222222222222222222222222 4 4 4 4 4 4 4 4 4 000 4 66 66666 888 3 5 0 0 66 6 5 999999999999 5 5 5 5 5 66 0 2 1 000 66 77 222 5 333 5 5 5 0 66 66 0000 5 5 5 77 5 5 5 5 5 5 5 1 66 5 5 2 5 5 3 5 0 5 5 5 5 5 11 5 0 5 5 5 5 1 5 5 5
lowQualScore : . . . . . .. . . . ... . . . .. . . . ....... . . . .. . .. . . . ... . .............. .. . . ... ..... . . .. . . . . .. . .. . . . .. .. .. . .. . . .. . . . . ..... . . . . ... ... . . . . . . ..... .. ... . ........ . .. . . .. ..................................... . ... . .. ... . ... . ....... . .... ... ......... .... ........ ........ . . . . . . . . . . .. . . . ... . . . . . .. . .. . ... . . . . . . ................................................................... . . . . . . . . . ... . .. ..... ... . . . . .. . . ............ . . . . . .. . . . ... .. .. ... . ... . . . . .. .. .... . . . .. . . . . . . . . .. . . . . . . . . . . . . . .. . . . . . . . . . .
lowQualScore : 0 0 7 0 0 99 0 0 0 444 4 7 7 99 1 1 0 0000000 2 0 4 99 0 88 7 4 7 777 2 22222222222222 22 7 7 111 44444 7 7 99 8 8 0 8 88 8 88 7 7 7 22 22 22 7 22 5 7 22 7 7 7 7 77777 7 7 7 7 777 555 7 7 7 7 4 7 88888 77 777 7 88888888 5 88 3 0 22 4444444444444444444444444444444444444 4 888 0 99 888 4 333 4 4444444 4 9999 888 000000000 6666 11111111 00000000 0 7 4 0 0 0 0 4 0 0 22 0 0 2 777 7 7 0 0 0 99 0 55 1 888 1 4 4 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777 0 4 4 4 4 4 4 4 4 000 4 11 88888 888 1 0 9 8 99 2 0 888888888888 6 0 0 0 0 99 0 2 0 555 99 22 555 0 888 0 0 0 0 99 99 6666 0 0 0 99 0 0 0 0 0 0 0 4 99 0 0 5 0 0 6 0 2 0 0 0 0 0 99 0 2 0 7 0 7 4 7 7 7
consensus : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTT----A---GAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATAC-ATANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCAC-ATA-AT-AA--CCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTN--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
Reference ( family-4565 ) : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTT----A---GAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATAC-ATANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCAC-ATA-AT-AA--CCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTN--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
gi|1 : TACATTATGCCTATGCTCATTTCCTT-GA-TAAAAATTG-TAATGTAAA-ATAG-AATAAG--TTTTTTTTGTATT-AAGAATATCCAATAACCACAAACACAGATGAGAAACCCC--AT-A-CCAGATTGAAATGGC-CAAGAAATATTT-CAC---GG-AATTA---------A---GAAGG--AACATCCAGAAT-AC-----TGTGGGGATTAAGGAT--ATAAATTAGGGTAGATATAC-ATAATTATATACATCTAAAAAACTGAAATTGATG--ATGCTCTGATA--G-GATCTATGATCCTAAAAAG-AT-AACAAAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AAGC-ATA-CA-AACTAAT---GAGC-CCTTCAACGAT-TACA-CAATACCCTTTT-TAAAATCTTGAAGAAA--AAGAAACTAAA---TCACTACA-TT-AA--CCTAAGTA-AA--TT--GACAA-AATAC-AGATC----------TAAACCAGCAAAATATATTCTTCTC---AGATTCTTGAAATCTTACCTC---ACCAGCCGTCCCGTGC-ACTCGTTTGT-------CATT-CC---TTGT---TCTAGCTCT-TGATC----CCT--------TGGCAC---CTTTTGCTCGTCACCCGTTGCTGGCGCGTCACTTAG-CC-TTG-A-AA-CCT-CAGTCA--CAAACTAGTGT-CTTCTATT-TCAAATCTTT-AATCCATCATCCTGT-TCTTT-TTA-CTG--GTACAACG-TTCAACAGATTAC-ACACTTTAA-CTTCAAGTGAACACGAA-ATG--------------C------------A--GC-ATTTC--AA--------TCCT-------------AATGACGGTCA-A-CGACC-GAAATCACT-GCGTTC-ATCT-ACAATCTAAT-G-T--GACG--G--AATACCGTGCCACATGCAACTAT-CATTACT--TCGAATTT-GTTACGA---A--AAAATCT-A-ATAAT-G--CTTTCGCCTTTCCAAGCT---AAAATTGGTTTTAAGAAT--AATTTTGTGGACAG---TGGCAAAA-A-GTAAAAACATTT-ATCT--C--TTCCTTCTGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGGAACCGC-G-G-AA-ACAACATT-CC-GGC-TGTTTC-TA-CCAGAAT-TTGCAT-TCACCCCAATTTAGTTGT-TAAAGAATGATAAAA-TTTGAAATTG-TATTATTAA
gi|10 : TAA-CTTTAAGTGA-CACGAA-GTGT-------------C------------ATGGC--TT-C--GACACTGCATTCTTGAAA---------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--T--AATAC---GTCAC-TGCAACTATACATTTCT--TTGAATTT-GTG-------A--AAAATCT-A-TTA-C-G--CTTT-GCCTTTTCAAACTT--AAAAT--CTTACTAGAAT-AAATTTC---GA-AG---TGACAAAA-A-CTAAAA-CGTTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCAt
gi|11 : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATT-AA--ATATCCAATAAC-ACAA------ATGAGAA-CCGC--ATCA-CCAGATTCAAATGGCGCAAGAA-TACTTTTGT---GTTGATTTTTTTC----ACAGGAAGG--AA-GTC-ATAAT-ACTAA--T---AAGATTAAGGAT--ATAATTCAGGGTAGA
gi|12 : tAGT-AC--AATTGTTGGGATTAAGGAT--AT
gi|12 : cacaagaTCTAAAAAACTAAACTTTA-G--ATGCT--CATA--GTGACAT--G--TGTAAAAAGAAT-AA--AGAATCAATGTTT-GCTGCATTTTT-ACAA-----AA-CAATA-CATAACTTATATAAA-C-CCTTTA-TG-TATACACCAATGCCCTTttctaaaaaactaaactttagatgctcatagtgacatgtgtaaaaagaataaagaatcaatgtttgctgcatttttacaaaacaatacataacttatataaaccctttatgtatacaccaatgcccttcggaaatactacataacaaaattgcaga
gi|15 : cacaagaagtacaattgttgggattaaggatattTACAT-ATGC-TATG-TATTTTCCTT-AAATAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATTAAA--ATATCCAAT-AC-A-----ACAGACGAGAA-CCGC--ATCA-CCAGATTCAAATcggaaatactacataacaaaattgcaga
gi|16 : tTTCTC---AAATTCTTCAA--CTTAGCCCTTGAA-------CC-AT--------TC-GT-------CATT-CC---TTGC---C
gi|17 : CAGCCGTCC-ATGCCGCT---C-GT-------CGTC-------------------------ATC----CCT--------T-------------GCTCGTCACCCGTTGCTGGCGC-TCATTTAG-CC-TTG-A-AAACAT-C-GTCA-ACAAA-TAGTGT-CTTCTATTTCCAAaccaccggattgcacgcccgatttgtcaatacggtctagttcctttgtcatcttgctc
gi|18 : tac----------TA---------------TTCTTCTC---AAATTCTTTAA--CTTAACCC---AACAACCGTCC-ATGTCGCTCGTC-AT-------C----CA---TTGC---CCTA-------GATC----CCC--------TGTTAC---CTT--GCTCGTCACCCGTTCCTG
gi|19 : -AC-CTTTAA-CTTCAAATGT-CACGAA-GTGTCGTGCTTTCGACAT------------A--GC-ATT-C--AA-------------------------TATGGCGTTC------------A-TTACC--CGT-C-GT-C-A-AATCTA---G-T---AC---G--AATA
gi|2 : tttgcctttATTTTCCTTTGA-TAAA---TG-TAATGAATCTATAG-AA-AAAGCTTTTTTT-GTATA-AA--CTATCCAA---C-ACAG-CAT----GAGAA-C-AC--ATCAACCAGATTGAAATGGCGCCAGAAATATTTTTACACAGGGAAT-----------A---GAAGGGGAA-ATC-ATAATTAC--AA-TGTGGGGATTAAGGATTAATAATTCAGGGGCGGT-T-C-ATATTTA-AT---TTTTAAAAACTAAATTTGA-GGGATGCT--GATACAGGCACATATG--TGTAAAAAGCATTAA--AAAGC--ATGTTTTGCTGCA-TTTTTAC-A-----AA-C-ATAACA-AA-TAAT---GG-GACCTTCA-CG-T-TACA-CAATGCC---TTTTAAATTCTTGAA------AAAAATCTACAACTTCAC-ATA-ATTAA--CCTAAGTC-AAATATTGGGCAACAATATGAGATCAAAACAAATATA---------------TTCTTTTTCAGAGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-ATGCCG-TCGTC-GT-------CATT-C----TTGC---TCT-GCTCTATAATC----CAT--------TGTCAC---CTTT-GCTTGTCACCCGTTGCTTAGGC-TCACTTAGGCCATTGGA-AAACCTGC-GTCA--CAAA-TAGTGT-CTTCTATTTTCAA-T--TT-AATCCATCATC-TGT--CTCTGTTA-CTGT-GT-CAA-------ACA-GT-AC-AC-CTTTTA-CTTCA-GTGA-CACGAAAGTG--------------CC-----------A--GCAGTT-C--AA--------TCCT--------------ATGACGCTCA-AACGACC-GAA-TCACT-GCG--C-AT-T-ACAATCTACTTG-T--GACGTAA--AATAC---GTCCC-TG-AACTATGCATTTCTCATTGAATTTCGTT--GAC--A--AAAATCTGA-TTA-TCG--CTTTCGCCTTT-CTAACTT--AA--T---TTACTAGAA--GAATTT----GA-AGA--TGGACAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAT-CTCCTAGCACTATCCAT-CCAT-TCACT-CGACAA-GCATCTTAA-AATAAGAAACGGCCG-GTAATACAACATA-CC-GGC-TC-TTC-TACCCAA--T-TTG-ATATCACCCTAATTCAGTTGT-AAAA-AATGATAAAA-TTTG-AATTG-TATTATTA
gi|20 : atagctatcatcg--ATATCCAATAAC-ACAA------ACAAGAA-CATC--ATCA-CCAGATCAAACTGGCGTAAGAA-TAcataaaaatttactctcttgaaatgtaaca
gi|21 : aaacagaaataccaaattgTTTAA-CTTCAAGTGA-CACGAA-GTT--------------CATTTTCCGACATA--GC-ATC-C--AA-------------------------TATGGCGCTCA-cgtatatggcaaccttt
gi|22 : -TC-T-TCACT-CGA-AA-GT-TAT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-TC-GGG-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAActctgacatgtcacttgcaaatgtcacacaa
gi|23 : TACAT-ATAC-TATG-TATTGTCCTT-AA-TAACA--TG-TAATGAATATATAG-GA-
gi|3 : aatATG-TATTTTCCTT-AA-AAACA--GG-TAATGAATATATAG---------------------------------AATAGC-ACA------GACGAAAA-CCGC--ATCA-CCAGATATAAATGGCGCAAGAA-TAGGTTTGT---GGTAATTTTTTTTCACAA---GGAGA--AA-ATC-ATA-------A--TGTTGGGATTAAGGAT--ATATTTCATAGTAGATATAC-A----TATATA-ATTT-AAAAACTAAAATTGA-G--ATGCT--TATA--GTGACATATG--TGTAAACGGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ACA-CA-AACTAAT---GA-C-CC-TCA-CG-T-TACA-CAATGTCCCTTTCTAAATTTTTGATG-----AAAAAACTAGAA--CTAC-ATA-AT-AG--CC--ACTACAAATCT--AAAAGCAA-A-----------------TA---------------TTCTTATC---AAATTCTTTAA--CTTACCTC---AACAACAGTCC-ATGTCGTTCGTC-ATTTCTTGACACCACCTGATTGCACGCCTGATTTT-TCATTAGGGCCTACTTCCCTTGTCAC---TTT--GCTCGTCACCCGTTCCTTGTGC-TC----AG-C---------AGC----------------TAGTAT-CGTCAATTCTCAAACAAAT-AATTCATCATC-TGG-TCTCT-TCA-TTGA-GT-CAACT-TTCAACA-TTTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CCGAA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-ATT--AACG--T--AATGC---GTCAC-TGCATCTTTACATTTAC--TTGAATTT-G-G--GAAATA--AAAAT-T-A-TTA-T-G--CTTT-GCTTTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTT---GA-AG---TGGTAAAA-G-GTCAAT-CATTT-TTTTTCT--TTC----TGAAATATA-AAA-ATCC-AGTACTA--CAT-TC-T-TTACT-CGA-AA-GT-TAT--A-AA-AAGAAAACAC-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-TAAA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|4 : TACAT-ATGC-TATG-TATTTTCCTT-GA-TAAAA--TG-TAATGAAAATATAG-AG-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGATGAGAA-CCCC--ATCA-CCAGATTGAAATGGCGCAAGAA-TATTTTCAC---AGGAATT----------A---GAAGG--AA-ATC-AGAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTTAGGGTAGATATAC-ATAATTATATA-ATCTAAAAA-CTGAAATTGA-G--ATGCT--GATA--GCGGCATATG--TCTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATACCCTTTTTAAAATTCTTGAAGAAAGAAAAAAACTAAAT--TCAC-ATACAT-AAAACCTAAGTA-AGATAT--GACAACAATAT-AGGCC----------TA---------------TTCTT-TC---AGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-GTGCCACTCGTT-GT-------CATT-CC---TTGT---TCTAGCTCT-TGATC----CCT--------TGTCACAAAC----ACTCGTCACCCGTTGCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCC-ACAAA-GAGTGT-CTCCTATTCACAATTTATC-AAGCAGTCATA-TGT-TCACT-TTA-CTTT-GT-CGACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-ATT-C--AA--------TCCC-------------TATGACGGTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--G--AATAC---GTCCC-TGCAACTATACATTACT--TCGAATTT-GT---GA---A--AAAATCT-A-TAA-T-G--CTTT-GCCTTTTCCAACTT--AAAAT--GTTTTAAGAAT-AAATTTTG--GA-AG---TGACAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCAAA--T-TTGCAT-TCACCCCAATTTAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaatgtaaatataagcaatga
gi|5 : ATTTAG-CCCTTA-ACAAACTT-C-GTCACACAAA-TAGCGTTCTTCTATTTTATACTAATTCAATCAATCATC-TGTATCTCT-TTAACTGT-GTACAACGCTTCAACA--TTACCAC-CTTTAA-CTTCAA-T-A-CACGAA-GTG--------------C------------A--GC-ATC-C--AA--------ATCC-------------TATGACGCTCATA-CGACCCGAA-TCACT-GCGT-CGAT-T-ACAATCTA-C-G-T--GACC--GCTAATAC---TTC-C-TGCAACTA-GCATTTCT--TTGAATTT-GTA--GA---AC-AAAATCT-A-TTA-T-G--CTTT-GCCTTTATCAACTT--AAAAT--GTTACTAGAAT-GAA-TTTG--AA-AAAGTTGACAAAA-AGGTAAAA-CATTTCATCT--T--TTC----T-TAATATA-AGATCTCT-AGCACTA--TATGTC-TCTCACT-CGA-AAGGC-TC---G-AA-AAGAAA-CGC-GCGTAA-ACAA-ATTACCGGGC-T--TTC-TACCCAA--T-TTGCAT-TCA-CCCAA-TCATTTGT-T-AA-AATGAT-AAATTTTG-AATTGTTATTATCAA
gi|6 : TG-TATTTTC-TT-AA-TATCA--TGCTAATGAATATATAGCAA-AAG--CTT-----GTATT-AA--AT--CCA-TAA--ACAA-CA-----GAGAA-CCGCGAATCA-CCAGATC-AAATGGGCCAAGAA-TACTTTTGT---GCTAATTTTTTTT-------------------TC-AT-----C--A--TTTGGGGATTAAGGAT--ATATTTCAGGGTAGATATACAATACATATATA-ATTT-AAAAGCTAAAATTGA-G--ATGCT--GATA--GTGGCATAAG--TGTAAAAAGCAT-AT--AGAGCCAATGTTT-GCTGCA-TTTT-AC-AAACTGAA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCGTTCTAAATTCTTGCAGAAA--AAAA---TAAAA--TCCC-CAA-AA-AA--CCTACAT----ATCT--AAAAGCA-----AG-------------TA---------------TTCTTCTC---AAATCCTTTAA--CTTACACC---AACAACTGTCC-ATGCCGC---TC-GT-------CATT-CC---TTGC---CCTA-------GATC----ACT--------TGTCAT---CGT--GCTCGTCACCCGTTCCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACACA-TAATGT-CGTCTATTTTCAAAGAATT-AATCCATCATttaagaaatctataactgctcttgaaaatgtaaatcataagcatgaattatatttttggatgtgcacttgtgtccataatacggatggggctgttctgacaatttccttcattacggccgctaacgccgcgttattcaaattgtcagaacaatcccgtccgtgttatgaccacaatgcacatccacaaatattaattcagattacttaaatgaatgag
gi|7 : atgcccctatcTCATC-TGG-TCTCT-TCA-TTGA-GT-CAAC--TTCAACT--TTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CG-AA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-A-TTAAACG--T--AATGC---GTCAC-TGCATCTTTACATTACT--T-GAATTT-GGA--GA---ATAAAAAT-T-A-TTA-T-G--CTTT-GC-TTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTTG---A-AG---TGGTAAAA-G-GTCAAT-CATTT-TTTT--TCTTTC----TGAAATATA-AAA--TCC-AGTACTA--CAT-TC-T-TTACT-CGA-AG-TT-TAT--A-AA-AAAAA--CAA-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-T-AA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|8 : tcag-TCTCT-TTA-CTGGAGT-CAACG-TTT--CA-A---C-AC-CTTTAAACTTCAAGC------------------------------------------------C-C--AA--------TCCCA------------TATGACGC-CA-A-CGACC-GAA-TCACTTGCGT-C-AT-TTACAATCTACT-G-T--GACGT-G--AATA----GTCA------AGTATACATTTCT--CTGAATTC-GTT--GA---A--AAAATAT-AATTA-T-GGGCTTT-GCCTTTTCCAACTTTAAAGAT--GTTACTAGAATTAAATTTTG--GA-AG---TGACAAAATA-GTAAAA-CATTGGATCT--T--TTC----TGTAATATATAAA-CTCC-A-CACTA--TAT-TC-T-TCACTCCGA-AA-TT-CTT--ATAA-AAAAAACCGC-G-GTAA-ACAACATT-TC-GGCTTG-TTTATACCCAGA-TGTTGCAT-TCACCCCAATTCAGTTGTCTAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaagt
gi|9 : tcA-CA-T-TACA-CAATGTCCCTTTCTAAAGATTTGAAGGAA--AAAA--CGAAAA--TCAT-ATA-A------CCAAAGTA-AA-TAT--GACAACAGTGC-AGGTC----------TAAAAGCAAACA-----TTCTTCTC---AAATTCTTTAA--CTTACCCC---AACAACCGTCC-ATGTCG---GTC-GT-------CATT-CC---TTGC---CCTGA-------ATC----CCT--------TGTAGC---ATT--GCTTGTCACCCGTTCCTTGCGC--CA----------TG-A-AAACCT-C-TTCA-ACAAA-TAGTGT-CTTCCATTCTCAAAGTATT-AATCCATCATC-TGT-TCACT-TCA-CTAG-GT-TAACG-TTCAGC--ATTAC-AC-taaaaatcttacctctctgtatttgtaaatagaaagcat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATATATAAAACAAGGCTCAAGAATTAATATTGTTGGATGTGCATTGTGTCAATCATAACACAGACGGGATGTTCTGACAATTTGAATAACGCACGTTAGTGTCAACTAGTGCATTATGAAAAATTGTCAGAACAGCCNNNNNNNNNNNNNNNNNNNNNNNCAATGTATATTCAT
Unaligned ( gi|14 ): TATTTGTGGATGTGCATTGTGTCAATTAACACAGACGGGATGTCTGAAATTTTTTCATAACGGCGCTGACGCGATGATTCAAATTGTCAGAACATCCCGTCTGGTTATGACACAA
Alignments
lowQualScore : 111 3333333 11 1 111 55555555555555 11111 1 11111 111 11111 11 111 11111111 8888888888888888888888888888888888888 111 1111111 444444444 1111 11111111 11111111 1 11 111 11 1 111 9999999999999999999999999999999999999999999999999999999999999999999 111 11111 111111111111 1 111 111 111 1 1111 11 1
lowQualScore : 8 8 5 5 5 66 5 5 5 888 1 5 5 66 0 0 5 5555555 2 5 1 66 5 00 0 1 0 111 7 44444444444444 99 6 6 777 99999 0 0 77 0 0 8 0 44 0 88 1 1 6 99 99 99 5 99 2 6 99 6 6 6 6 66666 6 6 6 6 111 777 5 5 5 5 0 3 22222 00 222 6 33333333 3 99 7 1 99 1111111111111111111111111111111111111 1 888 1 66 888 4 111 4 4444444 4 8888 777 111111111 0000 88888888 99999999 1 5 3 5 0 5 5 1 5 5 11 5 5 4 111 5 5 5 5 5 00 0 77 0 333 0 4 4 4 4 4 2222222222222222222222222222222222222222222222222222222222222222222 4 4 4 4 4 4 4 4 4 000 4 66 66666 888 3 5 0 0 66 6 5 999999999999 5 5 5 5 5 66 0 2 1 000 66 77 222 5 333 5 5 5 0 66 66 0000 5 5 5 77 5 5 5 5 5 5 5 1 66 5 5 2 5 5 3 5 0 5 5 5 5 5 11 5 0 5 5 5 5 1 5 5 5
lowQualScore : . . . . . .. . . . ... . . . .. . . . ....... . . . .. . .. . . . ... . .............. .. . . ... ..... . . .. . . . . .. . .. . . . .. .. .. . .. . . .. . . . . ..... . . . . ... ... . . . . . . ..... .. ... . ........ . .. . . .. ..................................... . ... . .. ... . ... . ....... . .... ... ......... .... ........ ........ . . . . . . . . . . .. . . . ... . . . . . .. . .. . ... . . . . . . ................................................................... . . . . . . . . . ... . .. ..... ... . . . . .. . . ............ . . . . . .. . . . ... .. .. ... . ... . . . . .. .. .... . . . .. . . . . . . . . .. . . . . . . . . . . . . . .. . . . . . . . . . .
lowQualScore : 0 0 7 0 0 99 0 0 0 444 4 7 7 99 1 1 0 0000000 2 0 4 99 0 88 7 4 7 777 2 22222222222222 22 7 7 111 44444 7 7 99 8 8 0 8 88 8 88 7 7 7 22 22 22 7 22 5 7 22 7 7 7 7 77777 7 7 7 7 777 555 7 7 7 7 4 7 88888 77 777 7 88888888 5 88 3 0 22 4444444444444444444444444444444444444 4 888 0 99 888 4 333 4 4444444 4 9999 888 000000000 6666 11111111 00000000 0 7 4 0 0 0 0 4 0 0 22 0 0 2 777 7 7 0 0 0 99 0 55 1 888 1 4 4 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777 0 4 4 4 4 4 4 4 4 000 4 11 88888 888 1 0 9 8 99 2 0 888888888888 6 0 0 0 0 99 0 2 0 555 99 22 555 0 888 0 0 0 0 99 99 6666 0 0 0 99 0 0 0 0 0 0 0 4 99 0 0 5 0 0 6 0 2 0 0 0 0 0 99 0 2 0 7 0 7 4 7 7 7
consensus : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTT----A---GAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATAC-ATANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCAC-ATA-AT-AA--CCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTN--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
Reference ( family-4565 ) : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTT----A---GAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATAC-ATANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCAC-ATA-AT-AA--CCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTN--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
gi|1 : TACATTATGCCTATGCTCATTTCCTT-GA-TAAAAATTG-TAATGTAAA-ATAG-AATAAG--TTTTTTTTGTATT-AAGAATATCCAATAACCACAAACACAGATGAGAAACCCC--AT-A-CCAGATTGAAATGGC-CAAGAAATATTT-CAC---GG-AATTA---------A---GAAGG--AACATCCAGAAT-AC-----TGTGGGGATTAAGGAT--ATAAATTAGGGTAGATATAC-ATAATTATATACATCTAAAAAACTGAAATTGATG--ATGCTCTGATA--G-GATCTATGATCCTAAAAAG-AT-AACAAAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AAGC-ATA-CA-AACTAAT---GAGC-CCTTCAACGAT-TACA-CAATACCCTTTT-TAAAATCTTGAAGAAA--AAGAAACTAAA---TCACTACA-TT-AA--CCTAAGTA-AA--TT--GACAA-AATAC-AGATC----------TAAACCAGCAAAATATATTCTTCTC---AGATTCTTGAAATCTTACCTC---ACCAGCCGTCCCGTGC-ACTCGTTTGT-------CATT-CC---TTGT---TCTAGCTCT-TGATC----CCT--------TGGCAC---CTTTTGCTCGTCACCCGTTGCTGGCGCGTCACTTAG-CC-TTG-A-AA-CCT-CAGTCA--CAAACTAGTGT-CTTCTATT-TCAAATCTTT-AATCCATCATCCTGT-TCTTT-TTA-CTG--GTACAACG-TTCAACAGATTAC-ACACTTTAA-CTTCAAGTGAACACGAA-ATG--------------C------------A--GC-ATTTC--AA--------TCCT-------------AATGACGGTCA-A-CGACC-GAAATCACT-GCGTTC-ATCT-ACAATCTAAT-G-T--GACG--G--AATACCGTGCCACATGCAACTAT-CATTACT--TCGAATTT-GTTACGA---A--AAAATCT-A-ATAAT-G--CTTTCGCCTTTCCAAGCT---AAAATTGGTTTTAAGAAT--AATTTTGTGGACAG---TGGCAAAA-A-GTAAAAACATTT-ATCT--C--TTCCTTCTGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGGAACCGC-G-G-AA-ACAACATT-CC-GGC-TGTTTC-TA-CCAGAAT-TTGCAT-TCACCCCAATTTAGTTGT-TAAAGAATGATAAAA-TTTGAAATTG-TATTATTAA
gi|10 : TAA-CTTTAAGTGA-CACGAA-GTGT-------------C------------ATGGC--TT-C--GACACTGCATTCTTGAAA---------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--T--AATAC---GTCAC-TGCAACTATACATTTCT--TTGAATTT-GTG-------A--AAAATCT-A-TTA-C-G--CTTT-GCCTTTTCAAACTT--AAAAT--CTTACTAGAAT-AAATTTC---GA-AG---TGACAAAA-A-CTAAAA-CGTTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCAt
gi|11 : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATT-AA--ATATCCAATAAC-ACAA------ATGAGAA-CCGC--ATCA-CCAGATTCAAATGGCGCAAGAA-TACTTTTGT---GTTGATTTTTTTC----ACAGGAAGG--AA-GTC-ATAAT-ACTAA--T---AAGATTAAGGAT--ATAATTCAGGGTAGA
gi|12 : tAGT-AC--AATTGTTGGGATTAAGGAT--AT
gi|12 : cacaagaTCTAAAAAACTAAACTTTA-G--ATGCT--CATA--GTGACAT--G--TGTAAAAAGAAT-AA--AGAATCAATGTTT-GCTGCATTTTT-ACAA-----AA-CAATA-CATAACTTATATAAA-C-CCTTTA-TG-TATACACCAATGCCCTTttctaaaaaactaaactttagatgctcatagtgacatgtgtaaaaagaataaagaatcaatgtttgctgcatttttacaaaacaatacataacttatataaaccctttatgtatacaccaatgcccttcggaaatactacataacaaaattgcaga
gi|15 : cacaagaagtacaattgttgggattaaggatattTACAT-ATGC-TATG-TATTTTCCTT-AAATAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT-GTATTAAA--ATATCCAAT-AC-A-----ACAGACGAGAA-CCGC--ATCA-CCAGATTCAAATcggaaatactacataacaaaattgcaga
gi|16 : tTTCTC---AAATTCTTCAA--CTTAGCCCTTGAA-------CC-AT--------TC-GT-------CATT-CC---TTGC---C
gi|17 : CAGCCGTCC-ATGCCGCT---C-GT-------CGTC-------------------------ATC----CCT--------T-------------GCTCGTCACCCGTTGCTGGCGC-TCATTTAG-CC-TTG-A-AAACAT-C-GTCA-ACAAA-TAGTGT-CTTCTATTTCCAAaccaccggattgcacgcccgatttgtcaatacggtctagttcctttgtcatcttgctc
gi|18 : tac----------TA---------------TTCTTCTC---AAATTCTTTAA--CTTAACCC---AACAACCGTCC-ATGTCGCTCGTC-AT-------C----CA---TTGC---CCTA-------GATC----CCC--------TGTTAC---CTT--GCTCGTCACCCGTTCCTG
gi|19 : -AC-CTTTAA-CTTCAAATGT-CACGAA-GTGTCGTGCTTTCGACAT------------A--GC-ATT-C--AA-------------------------TATGGCGTTC------------A-TTACC--CGT-C-GT-C-A-AATCTA---G-T---AC---G--AATA
gi|2 : tttgcctttATTTTCCTTTGA-TAAA---TG-TAATGAATCTATAG-AA-AAAGCTTTTTTT-GTATA-AA--CTATCCAA---C-ACAG-CAT----GAGAA-C-AC--ATCAACCAGATTGAAATGGCGCCAGAAATATTTTTACACAGGGAAT-----------A---GAAGGGGAA-ATC-ATAATTAC--AA-TGTGGGGATTAAGGATTAATAATTCAGGGGCGGT-T-C-ATATTTA-AT---TTTTAAAAACTAAATTTGA-GGGATGCT--GATACAGGCACATATG--TGTAAAAAGCATTAA--AAAGC--ATGTTTTGCTGCA-TTTTTAC-A-----AA-C-ATAACA-AA-TAAT---GG-GACCTTCA-CG-T-TACA-CAATGCC---TTTTAAATTCTTGAA------AAAAATCTACAACTTCAC-ATA-ATTAA--CCTAAGTC-AAATATTGGGCAACAATATGAGATCAAAACAAATATA---------------TTCTTTTTCAGAGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-ATGCCG-TCGTC-GT-------CATT-C----TTGC---TCT-GCTCTATAATC----CAT--------TGTCAC---CTTT-GCTTGTCACCCGTTGCTTAGGC-TCACTTAGGCCATTGGA-AAACCTGC-GTCA--CAAA-TAGTGT-CTTCTATTTTCAA-T--TT-AATCCATCATC-TGT--CTCTGTTA-CTGT-GT-CAA-------ACA-GT-AC-AC-CTTTTA-CTTCA-GTGA-CACGAAAGTG--------------CC-----------A--GCAGTT-C--AA--------TCCT--------------ATGACGCTCA-AACGACC-GAA-TCACT-GCG--C-AT-T-ACAATCTACTTG-T--GACGTAA--AATAC---GTCCC-TG-AACTATGCATTTCTCATTGAATTTCGTT--GAC--A--AAAATCTGA-TTA-TCG--CTTTCGCCTTT-CTAACTT--AA--T---TTACTAGAA--GAATTT----GA-AGA--TGGACAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAT-CTCCTAGCACTATCCAT-CCAT-TCACT-CGACAA-GCATCTTAA-AATAAGAAACGGCCG-GTAATACAACATA-CC-GGC-TC-TTC-TACCCAA--T-TTG-ATATCACCCTAATTCAGTTGT-AAAA-AATGATAAAA-TTTG-AATTG-TATTATTA
gi|20 : atagctatcatcg--ATATCCAATAAC-ACAA------ACAAGAA-CATC--ATCA-CCAGATCAAACTGGCGTAAGAA-TAcataaaaatttactctcttgaaatgtaaca
gi|21 : aaacagaaataccaaattgTTTAA-CTTCAAGTGA-CACGAA-GTT--------------CATTTTCCGACATA--GC-ATC-C--AA-------------------------TATGGCGCTCA-cgtatatggcaaccttt
gi|22 : -TC-T-TCACT-CGA-AA-GT-TAT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-TC-GGG-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAActctgacatgtcacttgcaaatgtcacacaa
gi|23 : TACAT-ATAC-TATG-TATTGTCCTT-AA-TAACA--TG-TAATGAATATATAG-GA-
gi|3 : aatATG-TATTTTCCTT-AA-AAACA--GG-TAATGAATATATAG---------------------------------AATAGC-ACA------GACGAAAA-CCGC--ATCA-CCAGATATAAATGGCGCAAGAA-TAGGTTTGT---GGTAATTTTTTTTCACAA---GGAGA--AA-ATC-ATA-------A--TGTTGGGATTAAGGAT--ATATTTCATAGTAGATATAC-A----TATATA-ATTT-AAAAACTAAAATTGA-G--ATGCT--TATA--GTGACATATG--TGTAAACGGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ACA-CA-AACTAAT---GA-C-CC-TCA-CG-T-TACA-CAATGTCCCTTTCTAAATTTTTGATG-----AAAAAACTAGAA--CTAC-ATA-AT-AG--CC--ACTACAAATCT--AAAAGCAA-A-----------------TA---------------TTCTTATC---AAATTCTTTAA--CTTACCTC---AACAACAGTCC-ATGTCGTTCGTC-ATTTCTTGACACCACCTGATTGCACGCCTGATTTT-TCATTAGGGCCTACTTCCCTTGTCAC---TTT--GCTCGTCACCCGTTCCTTGTGC-TC----AG-C---------AGC----------------TAGTAT-CGTCAATTCTCAAACAAAT-AATTCATCATC-TGG-TCTCT-TCA-TTGA-GT-CAACT-TTCAACA-TTTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CCGAA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-ATT--AACG--T--AATGC---GTCAC-TGCATCTTTACATTTAC--TTGAATTT-G-G--GAAATA--AAAAT-T-A-TTA-T-G--CTTT-GCTTTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTT---GA-AG---TGGTAAAA-G-GTCAAT-CATTT-TTTTTCT--TTC----TGAAATATA-AAA-ATCC-AGTACTA--CAT-TC-T-TTACT-CGA-AA-GT-TAT--A-AA-AAGAAAACAC-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-TAAA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|4 : TACAT-ATGC-TATG-TATTTTCCTT-GA-TAAAA--TG-TAATGAAAATATAG-AG-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGATGAGAA-CCCC--ATCA-CCAGATTGAAATGGCGCAAGAA-TATTTTCAC---AGGAATT----------A---GAAGG--AA-ATC-AGAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTTAGGGTAGATATAC-ATAATTATATA-ATCTAAAAA-CTGAAATTGA-G--ATGCT--GATA--GCGGCATATG--TCTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATACCCTTTTTAAAATTCTTGAAGAAAGAAAAAAACTAAAT--TCAC-ATACAT-AAAACCTAAGTA-AGATAT--GACAACAATAT-AGGCC----------TA---------------TTCTT-TC---AGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-GTGCCACTCGTT-GT-------CATT-CC---TTGT---TCTAGCTCT-TGATC----CCT--------TGTCACAAAC----ACTCGTCACCCGTTGCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCC-ACAAA-GAGTGT-CTCCTATTCACAATTTATC-AAGCAGTCATA-TGT-TCACT-TTA-CTTT-GT-CGACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-ATT-C--AA--------TCCC-------------TATGACGGTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--G--AATAC---GTCCC-TGCAACTATACATTACT--TCGAATTT-GT---GA---A--AAAATCT-A-TAA-T-G--CTTT-GCCTTTTCCAACTT--AAAAT--GTTTTAAGAAT-AAATTTTG--GA-AG---TGACAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCAAA--T-TTGCAT-TCACCCCAATTTAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaatgtaaatataagcaatga
gi|5 : ATTTAG-CCCTTA-ACAAACTT-C-GTCACACAAA-TAGCGTTCTTCTATTTTATACTAATTCAATCAATCATC-TGTATCTCT-TTAACTGT-GTACAACGCTTCAACA--TTACCAC-CTTTAA-CTTCAA-T-A-CACGAA-GTG--------------C------------A--GC-ATC-C--AA--------ATCC-------------TATGACGCTCATA-CGACCCGAA-TCACT-GCGT-CGAT-T-ACAATCTA-C-G-T--GACC--GCTAATAC---TTC-C-TGCAACTA-GCATTTCT--TTGAATTT-GTA--GA---AC-AAAATCT-A-TTA-T-G--CTTT-GCCTTTATCAACTT--AAAAT--GTTACTAGAAT-GAA-TTTG--AA-AAAGTTGACAAAA-AGGTAAAA-CATTTCATCT--T--TTC----T-TAATATA-AGATCTCT-AGCACTA--TATGTC-TCTCACT-CGA-AAGGC-TC---G-AA-AAGAAA-CGC-GCGTAA-ACAA-ATTACCGGGC-T--TTC-TACCCAA--T-TTGCAT-TCA-CCCAA-TCATTTGT-T-AA-AATGAT-AAATTTTG-AATTGTTATTATCAA
gi|6 : TG-TATTTTC-TT-AA-TATCA--TGCTAATGAATATATAGCAA-AAG--CTT-----GTATT-AA--AT--CCA-TAA--ACAA-CA-----GAGAA-CCGCGAATCA-CCAGATC-AAATGGGCCAAGAA-TACTTTTGT---GCTAATTTTTTTT-------------------TC-AT-----C--A--TTTGGGGATTAAGGAT--ATATTTCAGGGTAGATATACAATACATATATA-ATTT-AAAAGCTAAAATTGA-G--ATGCT--GATA--GTGGCATAAG--TGTAAAAAGCAT-AT--AGAGCCAATGTTT-GCTGCA-TTTT-AC-AAACTGAA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCGTTCTAAATTCTTGCAGAAA--AAAA---TAAAA--TCCC-CAA-AA-AA--CCTACAT----ATCT--AAAAGCA-----AG-------------TA---------------TTCTTCTC---AAATCCTTTAA--CTTACACC---AACAACTGTCC-ATGCCGC---TC-GT-------CATT-CC---TTGC---CCTA-------GATC----ACT--------TGTCAT---CGT--GCTCGTCACCCGTTCCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACACA-TAATGT-CGTCTATTTTCAAAGAATT-AATCCATCATttaagaaatctataactgctcttgaaaatgtaaatcataagcatgaattatatttttggatgtgcacttgtgtccataatacggatggggctgttctgacaatttccttcattacggccgctaacgccgcgttattcaaattgtcagaacaatcccgtccgtgttatgaccacaatgcacatccacaaatattaattcagattacttaaatgaatgag
gi|7 : atgcccctatcTCATC-TGG-TCTCT-TCA-TTGA-GT-CAAC--TTCAACT--TTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CG-AA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-A-TTAAACG--T--AATGC---GTCAC-TGCATCTTTACATTACT--T-GAATTT-GGA--GA---ATAAAAAT-T-A-TTA-T-G--CTTT-GC-TTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTTG---A-AG---TGGTAAAA-G-GTCAAT-CATTT-TTTT--TCTTTC----TGAAATATA-AAA--TCC-AGTACTA--CAT-TC-T-TTACT-CGA-AG-TT-TAT--A-AA-AAAAA--CAA-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-T-AA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|8 : tcag-TCTCT-TTA-CTGGAGT-CAACG-TTT--CA-A---C-AC-CTTTAAACTTCAAGC------------------------------------------------C-C--AA--------TCCCA------------TATGACGC-CA-A-CGACC-GAA-TCACTTGCGT-C-AT-TTACAATCTACT-G-T--GACGT-G--AATA----GTCA------AGTATACATTTCT--CTGAATTC-GTT--GA---A--AAAATAT-AATTA-T-GGGCTTT-GCCTTTTCCAACTTTAAAGAT--GTTACTAGAATTAAATTTTG--GA-AG---TGACAAAATA-GTAAAA-CATTGGATCT--T--TTC----TGTAATATATAAA-CTCC-A-CACTA--TAT-TC-T-TCACTCCGA-AA-TT-CTT--ATAA-AAAAAACCGC-G-GTAA-ACAACATT-TC-GGCTTG-TTTATACCCAGA-TGTTGCAT-TCACCCCAATTCAGTTGTCTAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaagt
gi|9 : tcA-CA-T-TACA-CAATGTCCCTTTCTAAAGATTTGAAGGAA--AAAA--CGAAAA--TCAT-ATA-A------CCAAAGTA-AA-TAT--GACAACAGTGC-AGGTC----------TAAAAGCAAACA-----TTCTTCTC---AAATTCTTTAA--CTTACCCC---AACAACCGTCC-ATGTCG---GTC-GT-------CATT-CC---TTGC---CCTGA-------ATC----CCT--------TGTAGC---ATT--GCTTGTCACCCGTTCCTTGCGC--CA----------TG-A-AAACCT-C-TTCA-ACAAA-TAGTGT-CTTCCATTCTCAAAGTATT-AATCCATCATC-TGT-TCACT-TCA-CTAG-GT-TAACG-TTCAGC--ATTAC-AC-taaaaatcttacctctctgtatttgtaaatagaaagcat
blockSeqs : . . . T A . C C . GCT T . A . . ACACAG T . G GA A TC A ACA T TTTTTTCACAA GG . . ATT TAA TA A TT A A A . GG . CA T . A T . T T T A AACTG . A A T ATA GA . . A C T AAAGA AT ACT . CATAAAA T AC A A TG ATATGAGATCAAAACAAATATA C CAG C . TTG . CTC . TTCTTGA A CTGA ACG GCTCTATA AGGG ACTTCCCT CTTT G . T G A G C A G . CA . T T ACA C . A G A GA A GC AG C . A . A CAGTGCTCCGAATTCTAAGTAGCATTCAA T A C . T . G . T CTT T TA TAA . A . CA T C GGAAATA C G A . C GG C T A TTA . TA G . AGT T G . C TC CT . T T T TC G A C C C G A C TA T T C C C T T A G T . A A G A C A . A T . T
blockSeqs : . . . . . . . . . T T . . . . ACAG C . G . . TC . . G TTTTTCACAG . . . AT AAT . . AT A T A . . . . G . C . . . . . . . . . . . . C . . . . C AAA AA A . ATTAA T C A C . GTGCAGGTCTAAAAGCAAACA C . T . . . TTC . . . C . GATTTTTC . . AAAC C . C . C . . C . . A . . T TTT . . . . . T . T AT . . . . . TCATGGCTTCGACACTGCATTCTTGAAA . . . . . . . . . CT . . GCT . C . . T . GAGAATA C . . . . . . T T T . A G . A . . . G . . . . . . . . . . . . . . A . . . C . . T . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . C T . . . . GCAT C . A . . TG . . T TTTTTT . . . GT AA . . CA A A A . . . . T . C . . . . . . . . . . . . C . . . . T GAA AA T . ATAG T A A A . ATATAGGCCTA T . A . . . CTC . . . A . AGCTCTTG . . CTT G . C . . . . C . . A . . C CTA . . . . . A . G AA . . . . . CAGTGCTCGAATTCTAAGTAGCATTCAA . . . . . . . . . CC . . TG . A . . T . TTGACA C . . . . . . T A T . G G . . . . . . . . . . . . . . . . . . . . A . . . A . . A . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . T . . . . ACA C . T . . CA . . G A . . . AT A . . . . . G . . . . C . C . . . . . . . . . . . . C . . . . C . . A . AAAA A A A C . AATA A . T . . . CT . . . C . AG . . TTT C . T . . . . T . . A . . C AGA . . . . . T . G AA . . . . . TCGTGCTTTCGACATAGCATTCAA . . . . . . . . . CT . . T . C . . C . TAGAAC C . . . . . . A C A . G G . . . . . . . . . . . . . . . . . . . . C . . . C . . T . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . A T . G . . AT . . T A . . . . A . . . . . . . T . C . . . . . . . . . . . . C . . . . C . . A . A . . . A . AGTA C . A . . . TC . . . C . AG . . CGT G . C . . . . C . . A . . T AGT . . . . . T . G A . . . . . CATTTTCCGACATAGCATCCAA . . . . . . . . . CC . . G . A . . T . TTGAA A . . . . . . T C T . A . . . . . . . . . . . . . . . . . . . . . C . . . C . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . C . . TG . . A . . . . . C . T . . . C . . . C . GA . . ATT C . . . . . . C . . . . . T T . . . . . A . . T . . . . . CCAGCAGTTCAATCCT . . . . . . . . . CT . . T . A . . T . TGAA . . . . . . . T A T . G . . . . . . . . . . . . . . . . . . . . . A . . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . G . . G . . C . . T . . . . . . . . . . . . . C . . . . . . . . . . . C . . . G . . A . . . . . CAGCATTCAATCCC . . . . . . . . . C . . G . . . . . . TGA . . . . . . . . C A . G . . . . . . . . . . . . . . . . . . . . T . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . CAGCATCCAAATCC . . . . . . . . . . . . T
blockSeqs : . . . CCAATCCCA .
blockSeqCons : ** *** ** ACA**** TTTTTA******** A**** A* ** ** ** C** A** ATATAGGTCTA************************** ** CTT***** A* N* AA* *** TGAA******** T** ** G* G** **** **
originalCons : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG--TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA-CACAGACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTT----A---GAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATAC-ATANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCAC-ATA-AT-AA--CCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTN--GA---A--AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
finalCons : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---TTTTTT-GTATT-AA--ATATCCAATAAC-ACAACA----ACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTTA--------GAAGG--AA-ATC-ATAAT-ACA----TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATAC-ATANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-A-----AA-C-ATA-CA-AACTAAT---GAC--CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCAC-ATA-AT-AA--CCTAAGTA-AAATNT--GACAACAATATAGGTCTA--------------------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CC---TTGC---CCTAGCTCT-TGATC----CCT--------TGTCACCTT-----GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCAA-CAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACAA-TTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GTGAA--------AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAATG-AATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--T--TTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATATATAAAACAAGGCTCAAGAATTAATATTGTTGGATGTGCATTGTGTCAATCATAACACAGACGGGATGTTCTGACAATTTGAATAACGCACGTTAGTGTCAACTAGTGCATTATGAAAAATTGTCAGAACAGCCNNNNNNNNNNNNNNNNNNNNNNNCAATGTATATTCAT
Unaligned ( gi|14 ): TATTTGTGGATGTGCATTGTGTCAATTAACACAGACGGGATGTCTGAAATTTTTTCATAACGGCGCTGACGCGATGATTCAAATTGTCAGAACATCCCGTCTGGTTATGACACAA
Alignments
lowQualScore : 1111 11 33333333333 11 1 111 5555555555 22222222 1 22222 111 11 111 11111111 1111 888888888888888888888888888888888888 1111111 44444444444444444444444 11111111 1 11 111 11 1 111 9999999999999999999999999999999999999999999999999999999999999999999 11 11111 3333333333 1 111 111 111 1 11 1111 11 1
lowQualScore : 8 8 5 5 5 66 5 5 5 0000 1 33 5 66 0 0 0 5 55555555555 5 1 66 5 00 0 1 0 111 7 4444444444 99 6 6 33333333 0 0 77 0 0 8 99 0 88 5 6 99 99 99 5 99 2 6 99 6 6 6 6 6 33333 6 6 111 777 5 5 5 5 0 3 99 88 222 6 33333333 3 4444 1 99 777777777777777777777777777777777777 1 888 1 66 888 4 5 1 4 4444444 4 1 777 777 88888888888888888888888 99999999 1 5 6 5 0 5 5 0 5 5 00 5 5 4 111 5 5 5 5 5 00 0 77 0 333 0 4 4 4 4 4 2222222222222222222222222222222222222222222222222222222222222222222 4 4 4 4 4 4 4 4 4 11 4 66 66666 888 3 5 0 0 66 6 5 5555555555 5 5 5 5 5 5 66 0 2 1 000 66 77 888 5 333 5 5 5 0 33 0000 5 5 5 77 5 5 5 5 5 5 5 1 66 5 5 2 5 5 3 5 0 5 5 5 5 5 11 5 0 5 5 5 5 1 5 5 5
lowQualScore : . . . . . .. . . . .... . .. . .. . . . . ........... . . .. . .. . . . ... . .......... .. . . ........ . . .. . . . .. . .. . . .. .. .. . .. . . .. . . . . . ..... . . ... ... . . . . . . .. .. ... . ........ . .... . .. .................................... . ... . .. ... . . . . ....... . . ... ... ....................... ........ . . . . . . . . . . .. . . . ... . . . . . .. . .. . ... . . . . . . ................................................................... . . . . . . . . . .. . .. ..... ... . . . . .. . . .......... . . . . . . .. . . . ... .. .. ... . ... . . . . .. .... . . . .. . . . . . . . . .. . . . . . . . . . . . . . .. . . . . . . . . . .
lowQualScore : 0 0 7 0 0 99 0 0 0 9999 4 66 7 99 1 1 1 0 44444444444 0 4 99 0 88 7 4 7 777 2 5555555555 22 7 7 66666666 7 7 99 8 8 0 88 8 88 5 7 22 22 22 7 22 5 7 22 7 7 7 7 7 33333 7 7 777 555 7 7 7 7 4 7 22 77 777 7 88888888 5 7777 0 22 666666666666666666666666666666666666 4 888 0 99 888 4 7 1 4 4444444 4 1 888 888 66666666666666666666666 00000000 0 7 5 0 0 0 0 1 0 0 11 0 0 2 777 7 7 0 0 0 99 0 55 1 888 1 4 4 0 0 0 7777777777777777777777777777777777777777777777777777777777777777777 0 4 4 4 4 4 4 4 4 77 4 11 88888 888 1 0 9 8 99 2 0 4444444444 0 6 0 0 0 0 99 0 2 0 555 99 22 888 0 888 0 0 0 0 88 6666 0 0 0 99 0 0 0 0 0 0 0 4 99 0 0 5 0 0 6 0 2 0 0 0 0 0 99 0 2 0 7 0 7 4 7 7 7
consensus : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT--GTATT-AA--ATATCCAATAAC-ACAA---CA---ACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTT-----AGAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATACA-TANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-C-----ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAA-CTAAAA--TCAC-ATA-AT-AA--CCTAAGTA-AAATNT--GACAACAATAC-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CCT---TGC---CCTAGCTCT-TGAT------------CCCTTGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GT---GA----A-AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--TTTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
Reference ( family-4565 ) : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---TTTTTT--GTATT-AA--ATATCCAATAAC-ACAA---CA---ACGAGAA-CCGC--ATCA-CCAGATCGAAATGGCGCAAGAA-TATTTTCGC---GGTAATTTTTTT-----AGAAGG--AA-ATC-ATAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTCAGGGTAGATATACA-TANTTATATA-ATCTAAAAAACTAAAATTGA-G--ATGCT--GATA--GTGACATATG--TGTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-C-----ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCTTTCTAAATTCTTGAAGAAA--AAAAAACTAAAA--TCAC-ATA-AT-AA--CCTAAGTA-AAATNT--GACAACAATAT-AGGTC----------TA---------------TTCTTCTC---AAATTCTTNAA--CTTACCCC---AACAGCCGTCC-ATGCCGCTCGTC-GT-------CATT-CCT---TGC---CCTAGCTCT-TGAT------------CCCTTGTCAC---CTT--GCTCGTCACCCGTTNCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACAAA-TAGTGT-CTTCTATTCTCAAATNATT-AATCCATCATC-TGT-TCTCT-TTA-CTGN-GT-CAACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-GTT-C--AA--------TCCT-------------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACC-G-T--GACG--G--AATAC---GTCAC-TGCAACTATACATTTCT--TCGAATTT-GT---GA----A-AAAATCT-A-TTA-T-G--CTTT-GCCTTTTCNAACTT--AAAAT--GTTACTAGAAT-GAATTTTG--GA-AG---TGGCAAAA-A-GTAAAA-CATTT-ATCT--TTTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CGA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAATTCAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAA
gi|1 : TACATTATGCCTATGCTCATTTCCTT-GA-TAAAAATTG-TAATGTAAA-ATAG-AATAAG---TTTTTTTTGTATT-AAGAATATCCAATAACCACAAACACAG--ATGAGAAACCCC--AT-A-CCAGATTGAAATGGC-CAAGAAATATTT-CAC---GG-AATTA---------AGAAGG--AACATCCAGAAT-AC-----TGTGGGGATTAAGGAT--ATAAATTAGGGTAGATATACA-TAATTATATACATCTAAAAAACTGAAATTGATG--ATGCTCTGATA--G-GATCTATGATCCTAAAAAG-AT-AACAAAAGCCAATGTTT-GCTGCA-TTTT-AC-AAAGC-----ATA-CA-AACTAAT---GAGC-CCTTCAACGAT-TACA-CAATACCCTTTT-TAAAATCTTGAAGAAA--AAGAAACTAAA---TCACTACA-TT-AA--CCTAAGTA-AA--TT--GACAA-AATAC-AGATC----------TAAACCAGCAAAATATATTCTTCTC---AGATTCTTGAAATCTTACCTC---ACCAGCCGTCCCGTGC-ACTCGTTTGT-------CATT-CCT---TGT---TCTAGCTCT-TGAT------------CCCTTGGCAC---CTTTTGCTCGTCACCCGTTGCTGGCGCGTCACTTAG-CC-TTG-A-AA-CCT-CAGTCA--CAAACTAGTGT-CTTCTATT-TCAAATCTTT-AATCCATCATCCTGT-TCTTT-TTA-CTG--GTACAACG-TTCAACAGATTAC-ACACTTTAA-CTTCAAGTGAACACGAA-ATG--------------C------------A--GC-ATTTC--AA--------TCCT-------------AATGACGGTCA-A-CGACC-GAAATCACT-GCGTTC-ATCT-ACAATCTAAT-G-T--GACG--G--AATACCGTGCCACATGCAACTAT-CATTACT--TCGAATTT-GTTACGA----A-AAAATCT-A-ATAAT-G--CTTTCGCCTTTCCAAGCT---AAAATTGGTTTTAAGAAT--AATTTTGTGGACAG---TGGCAAAA-A-GTAAAAACATTT-ATCT--CTTCCTTCTGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGGAACCGC-G-G-AA-ACAACATT-CC-GGC-TGTTTC-TA-CCAGAAT-TTGCAT-TCACCCCAATTTAGTTGT-TAAAGAATGATAAAA-TTTGAAATTG-TATTATTAA
gi|10 : TAA-CTTTAAGTGA-CACGAA-GTGT-------------C------------ATGGC--TT-C--GACACTGCATTCTTGAAA---------TATGACGCTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--T--AATAC---GTCAC-TGCAACTATACATTTCT--TTGAATTT-GT---G-----A-AAAATCT-A-TTA-C-G--CTTT-GCCTTTTCAAACTT--AAAAT--CTTACTAGAAT-AAATTTC---GA-AG---TGACAAAA-A-CTAAAA-CGTTT-ATCT--TTTC----TGTAATATA-AAA-CTCC-AGCAt
gi|11 : TACAT-ATGC-TATG-TATTTTCCTT-AA-TAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT--GTATT-AA--ATATCCAATAAC-ACA-----A---ATGAGAA-CCGC--ATCA-CCAGATTCAAATGGCGCAAGAA-TACTTTTGT---GTTGATTTTTTTCACA-GGAAGG--AA-GTC-ATAAT-ACTAA--T---AAGATTAAGGAT--ATAATTCAGGGTAGA
gi|12 : tAGT-AC--AATTGTTGGGATTAAGGAT--AT
gi|12 : cacaagaTCTAAAAAACTAAACTTTA-G--ATGCT--CATA--GTGACAT--G--TGTAAAAAGAAT-AA--AGAATCAATGTTT-GCTGCATTTTT-ACAAAA-CA----ATA-CATAACTTATATAAA-C-CCTTTA-TG-TATACACCAATGCCCTTttctaaaaaactaaactttagatgctcatagtgacatgtgtaaaaagaataaagaatcaatgtttgctgcatttttacaaaacaatacataacttatataaaccctttatgtatacaccaatgcccttcggaaatactacataacaaaattgcaga
gi|15 : cacaagaagtacaattgttgggattaaggatattTACAT-ATGC-TATG-TATTTTCCTT-AAATAAAA--TG-TAATGAATATATAG-AA-AAG---CTTTTT--GTATTAAA--ATATCCAAT----ACAA---CAG--ACGAGAA-CCGC--ATCA-CCAGATTCAAATcggaaatactacataacaaaattgcaga
gi|16 : tTTCTC---AAATTCTTCAA--CTTAGCCCTTGAA-------CC-AT--------TC-GT-------CATT-CCT---TGC---C
gi|17 : CAGCCGTCC-ATGCCGCT---C-GT-------CGTC-------------------------AT------------CCCTT-------------GCTCGTCACCCGTTGCTGGCGC-TCATTTAG-CC-TTG-A-AAACAT-C-GTCA-ACAAA-TAGTGT-CTTCTATTTCCAAaccaccggattgcacgcccgatttgtcaatacggtctagttcctttgtcatcttgctc
gi|18 : tac----------TA---------------TTCTTCTC---AAATTCTTTAA--CTTAACCC---AACAACCGTCC-ATGTCGCTCGTC-AT-------C----CAT---TGC---CCTA-------GAT------------CCCCTGTTAC---CTT--GCTCGTCACCCGTTCCTG
gi|19 : -AC-CTTTAA-CTTCAAATGT-CACGAA-GTGTCGTGCTTTCGACAT------------A--GC-ATT-C--AA-------------------------TATGGCGTTC------------A-TTACC--CGT-C-GT-C-A-AATCTA---G-T---AC---G--AATA
gi|2 : tttgcctttATTTTCCTTTGA-TAAA---TG-TAATGAATCTATAG-AA-AAAGCTTTTTTT--GTATA-AA--CTATCCAA---C-ACAG---CA----TGAGAA-C-AC--ATCAACCAGATTGAAATGGCGCCAGAAATATTTTTACACAGGGAAT-----------AGAAGGGGAA-ATC-ATAATTAC--AA-TGTGGGGATTAAGGATTAATAATTCAGGGGCGGT-T-CA-TATTTA-AT---TTTTAAAAACTAAATTTGA-GGGATGCT--GATACAGGCACATATG--TGTAAAAAGCATTAA--AAAGC--ATGTTTTGCTGCA-TTTTTAC-AAA-C-----ATAACA-AA-TAAT---GG-GACCTTCA-CG-T-TACA-CAATGCC---TTTTAAATTCTTGAA------AAAAATCTACAACTTCAC-ATA-ATTAA--CCTAAGTC-AAATATTGGGCAACAATATGAGATCAAAACAAATATA---------------TTCTTTTTCAGAGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-ATGCCG-TCGTC-GT-------CATT-C-T---TGC---TCT-GCTCTATAAT------------CCATTGTCAC---CTTT-GCTTGTCACCCGTTGCTTAGGC-TCACTTAGGCCATTGGA-AAACCTGC-GTCA--CAAA-TAGTGT-CTTCTATTTTCAA-T--TT-AATCCATCATC-TGT--CTCTGTTA-CTGT-GT-CAA-------ACA-GT-AC-AC-CTTTTA-CTTCA-GTGA-CACGAAAGTG--------------CC-----------A--GCAGTT-C--AA--------TCCT--------------ATGACGCTCA-AACGACC-GAA-TCACT-GCG--C-AT-T-ACAATCTACTTG-T--GACGTAA--AATAC---GTCCC-TG-AACTATGCATTTCTCATTGAATTTCGTT--GAC---A-AAAATCTGA-TTA-TCG--CTTTCGCCTTT-CTAACTT--AA--T---TTACTAGAA--GAATTT----GA-AGA--TGGACAAA-A-GTAAAA-CATTT-ATCT--TTTC----TGTAATATA-AAT-CTCCTAGCACTATCCAT-CCAT-TCACT-CGACAA-GCATCTTAA-AATAAGAAACGGCCG-GTAATACAACATA-CC-GGC-TC-TTC-TACCCAA--T-TTG-ATATCACCCTAATTCAGTTGT-AAAA-AATGATAAAA-TTTG-AATTG-TATTATTA
gi|20 : atagctatcatcg--ATATCCAATAAC-ACAA--------ACAAGAA-CATC--ATCA-CCAGATCAAACTGGCGTAAGAA-TAcataaaaatttactctcttgaaatgtaaca
gi|21 : aaacagaaataccaaattgTTTAA-CTTCAAGTGA-CACGAA-GTT--------------CATTTTCCGACATA--GC-ATC-C--AA-------------------------TATGGCGCTCA-cgtatatggcaaccttt
gi|22 : -TC-T-TCACT-CGA-AA-GT-TAT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-TC-GGG-TG-TTC-TACCCAG--T-TTGCAT-TCACCCCAActctgacatgtcacttgcaaatgtcacacaa
gi|23 : TACAT-ATAC-TATG-TATTGTCCTT-AA-TAACA--TG-TAATGAATATATAG-GA-
gi|3 : aatATG-TATTTTCCTT-AA-AAACA--GG-TAATGAATATATAG-AA---------------------------------TAGC-ACAG--------ACGAAAA-CCGC--ATCA-CCAGATATAAATGGCGCAAGAA-TAGGTTTGT---GGTAATTTTTTTTCACAAGGAGA--AA-ATC-ATAAT---------GTTGGGATTAAGGAT--ATATTTCATAGTAGATATACA-TA----TATA-ATTTAAAAA-CTAAAATTGA-G--ATGCT--TATA--GTGACATATG--TGTAAACGGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-C-----ACA-CA-AACTAAT---GA-C-CCT-CA-CG-T-TACA-CAATGTCCCTTTCTAAATTTTTGATGAAA--AAA---CTAGAA--CTAC-ATA-AT-AG--CC--ACTACAAATCT--AAAAGCAA----A--------------TA---------------TTCTTATC---AAATTCTTTAA--CTTACCTC---AACAACAGTCC-ATGTCGTTCGTC-ATTTCTTGACACCACCTGATTGCACGCCTGATTTT-TCATTAGGGCCTACTTCCCTTGTCAC---TTT--GCTCGTCACCCGTTCCTTGTGC-TCA------------------------G-CA-GC----TAGTAT-CGTCAATTCTCAAACAAAT-AATTCATCATC-TGG-TCTCT-TCA-TTGA-GT-CAACT-TTCAACA-TTTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CCGAA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-ATT--AACG--T--AATGC---GTCAC-TGCATCTTTACATTTAC--TTGAATTT-GG---GAAAT-A-AAAAT-T-A-TTA-T-G--CTTT-GCTTTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTT---GA-AG---TGGTAAAA-G-GTCAAT-CATTT-TTTTTCTTTC----TGAAATATA-AAA-ATCC-AGTACTA--CAT-TC-T-TTACT-CGA-AA-GT-TAT--A-AA-AAGAAAACAC-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-TAAA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|4 : TACAT-ATGC-TATG-TATTTTCCTT-GA-TAAAA--TG-TAATGAAAATATAG-AG-AAG---TTTTTTT-GTATT-AA--ATATCCAATAAC-ACAA---CACAGATGAGAA-CCCC--ATCA-CCAGATTGAAATGGCGCAAGAA-TATTTTCAC---AGGAATT----------AGAAGG--AA-ATC-AGAAT-AC--A--TGTGGGGATTAAGGAT--ATAATTTAGGGTAGATATACA-TAATTATATA-ATCTAAAAA-CTGAAATTGA-G--ATGCT--GATA--GCGGCATATG--TCTAAAAAGCAT-AA--AAAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-C-----ATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATACCCTTTTTAAAATTCTTGAAGAAAGAAAAAAACTAAAT--TCAC-ATACAT-AAAACCTAAGTA-AGATAT--GACAACAATAT-AGGCC----------TA---------------TTCTT-TC---AGATTCTGAAA--CTTACCCT---ACCAGCCGTCC-GTGCCACTCGTT-GT-------CATT-CCT---TGT---TCTAGCTCT-TGAT------------CCCTTGTCACAAAC----ACTCGTCACCCGTTGCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCC-ACAAA-GAGTGT-CTCCTATTCACAATTTATC-AAGCAGTCATA-TGT-TCACT-TTA-CTTT-GT-CGACG-TTCAACA-ATTAC-AC-CTTTAA-CTTCAAGTGA-CACGAA-GTG--------------C------------A--GC-ATT-C--AA--------TCCC-------------TATGACGGTCA-A-CGACC-GAA-TCACT-GCGT-C-AT-T-ACAATCTACT-G-T--GACG--G--AATAC---GTCCC-TGCAACTATACATTACT--TCGAATTT-GT---GA----A-AAAATCT-A-TAA-T-G--CTTT-GCCTTTTCCAACTT--AAAAT--GTTTTAAGAAT-AAATTTTG--GA-AG---TGACAAAA-A-GTAAAA-CATTT-ATCT--TTTC----TGTAATATA-AAA-CTCC-AGCACTA--CAT-TC-T-TCACT-CTA-AA-GC-TCT--A-AA-AAGAAACCGC-G-GTAA-ACAACATT-CC-GGC-TG-TTC-TACCAAA--T-TTGCAT-TCACCCCAATTTAGTTGT-TAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaatgtaaatataagcaatga
gi|5 : ATTTAG-CCCTTA-ACAAACTT-C-GTCACACAAA-TAGCGTTCTTCTATTTTATACTAATTCAATCAATCATC-TGTATCTCT-TTAACTGT-GTACAACGCTTCAACA--TTACCAC-CTTTAA-CTTCAA-T-A-CACGAA-GTG--------------C------------A--GC-ATC-C--AA--------ATCC-------------TATGACGCTCATA-CGACCCGAA-TCACT-GCGT-CGAT-T-ACAATCTAC--G-T--GACC--GCTAATAC---TTC-C-TGCAACTA-GCATTTCT--TTGAATTT-GTA--GA----ACAAAATCT-A-TTA-T-G--CTTT-GCCTTTATCAACTT--AAAAT--GTTACTAGAAT-GAA-TTTG--AA-AAAGTTGACAAAA-AGGTAAAA-CATTTCATCT--TTTC----T-TAATATA-AGATCTCT-AGCACTA--TATGTC-TCTCACT-CGA-AAGGC-TC---G-AA-AAGAAA-CGC-GCGTAA-ACAA-ATTACCGGGC-T--TTC-TACCCAA--T-TTGCAT-TCA-CCCAA-TCATTTGT-T-AA-AATGAT-AAATTTTG-AATTGTTATTATCAA
gi|6 : TG-TATTTTC-TT-AA-TATCA--TGCTAATGAATATATAGCAA-AAG---CTT-----GTATT-AA--AT--CCA-TAA--ACAA---CA-----GAGAA-CCGCGAATCA-CCAGATC-AAATGGGCCAAGAA-TACTTTTGT---GCTAATTTTTTT-----T-----------TC-AT-----C--A--TTTGGGGATTAAGGAT--ATATTTCAGGGTAGATATACAATACATATATA-ATTTAAAAG-CTAAAATTGA-G--ATGCT--GATA--GTGGCATAAG--TGTAAAAAGCAT-AT--AGAGCCAATGTTT-GCTGCA-TTTT-AC-AAA-CTGAACATA-CA-AACTAAT---GA-C-CCTTCA-CG-T-TACA-CAATGCCCCGTTCTAAATTCTTGCAGAAA--AAAA---TAAAA--TCCC-CAA-AA-AA--CCTACATA----TCT--AAAAGCAA------GT------------A---------------TTCTTCTC---AAATCCTTTAA--CTTACACC---AACAACTGTCC-ATGCCGCTCGTC-----------ATT-CCT---TGC---CCTAG-------AT------------CACTTGTCAT---CGT--GCTCGTCACCCGTTCCTGGCGC-TCACTTAG-CC-TTG-A-AAACCT-C-GTCA-ACACA-TAATGT-CGTCTATTTTCAAAGAATT-AATCCATCATttaagaaatctataactgctcttgaaaatgtaaatcataagcatgaattatatttttggatgtgcacttgtgtccataatacggatggggctgttctgacaatttccttcattacggccgctaacgccgcgttattcaaattgtcagaacaatcccgtccgtgttatgaccacaatgcacatccacaaatattaattcagattacttaaatgaatgag
gi|7 : atgcccctatcTCATC-TGG-TCTCT-TCA-TTGA-GT-CAAC--TTCAACT--TTAC-AT-CTTTAA-CTTCAAGTGA-CATGAA-GTG--------------C------------A--GT-GCT-CG-AA--------TTCTAAGTAGCATTCAATGTGGCGCTCG-A-CGACC-GGA-TCACT-GCAT-C-AC-T-ACAATCTACC-A-TTAAACG--T--AATGC---GTCAC-TGCATCTTTACATTACT--T-GAATTT-G----GAGAATA-AAAAT-T-A-TTA-T-G--CTTT-GC-TTTTCAAATTA--AAAAT--GTTACTAAATT-GAATTTT---GA-AG---TGGTAAAA-G-GTCAAT-CATTT-TTTTTCTTTC----TGAAATATA-AAA--TCC-AGTACTA--CAT-TC-T-TTACT-CGA-AG-TT-TAT--A-AA-AAAAA--CAA-A-GAAA-ACACTATT-CT-GAC-TG-GTG-TACCCAG--T-CTGTAT-TCACACCAATTCAGTTGT-T-AA-AATGAT-AGC-TTTT-AATTG-TATTA
gi|8 : tcag-TCTCT-TTA-CTGGAGT-CAACG-TTT--CA-A---C-AC-CTTTAAACTTCAAGC------------------------------------------------C-C--AA--------TCCCA------------TATGACGC-CA-A-CGACC-GAA-TCACTTGCGT-C-AT-TTACAATCTACT-G-T--GACGT-G--AATA----GTCA------AGTATACATTTCT--CTGAATTC-GTT--GA----A-AAAATAT-AATTA-T-GGGCTTT-GCCTTTTCCAACTTTAAAGAT--GTTACTAGAATTAAATTTTG--GA-AG---TGACAAAATA-GTAAAA-CATTGGATCT--TTTC----TGTAATATATAAA-CTCC-A-CACTA--TAT-TC-T-TCACTCCGA-AA-TT-CTT--ATAA-AAAAAACCGC-G-GTAA-ACAACATT-TC-GGCTTG-TTTATACCCAGA-TGTTGCAT-TCACCCCAATTCAGTTGTCTAAA-AATGAT-AAA-TTTG-AATTG-TATTATTAAgcaataaaaaatactctctggaaagt
gi|9 : tcA-CA-T-TACA-CAATGTCCCTTTCTAAAGATTTGAAGGAA--AAAA--CGAAAA--TCAT-ATA-A------CCAAAGTA-AA-TAT--GACAACAGTGC-AGGTC----------TAAAAGCAAACA-----TTCTTCTC---AAATTCTTTAA--CTTACCCC---AACAACCGTCC-ATGTCG---GTC-GT-------CATT-CCT---TGC---CCTGA-------AT------------CCCTTGTAGC---ATT--GCTTGTCACCCGTTCCTTGCGC--CA----------TG-A-AAACCT-C-TTCA-ACAAA-TAGTGT-CTTCCATTCTCAAAGTATT-AATCCATCATC-TGT-TCACT-TCA-CTAG-GT-TAACG-TTCAGC--ATTAC-AC-taaaaatcttacctctctgtatttgtaaatagaaagcat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AATATATAAAACAAGGCTCAAGAATTAATATTGTTGGATGTGCATTGTGTCAATCATAACACAGACGGGATGTTCTGACAATTTGAATAACGCACGTTAGTGTCAACTAGTGCATTATGAAAAATTGTCAGAACAGCCNNNNNNNNNNNNNNNNNNNNNNNCAATGTATATTCAT
Unaligned ( gi|14 ): TATTTGTGGATGTGCATTGTGTCAATTAACACAGACGGGATGTCTGAAATTTTTTCATAACGGCGCTGACGCGATGATTCAAATTGTCAGAACATCCCGTCTGGTTATGACACAA