lowQualScore : 111111 1111 66666666666666666666666666666 2222222 2 55555555555 11111 11111 22 111111 1111
lowQualScore : 4 55 777 888888 33 4444 0 6 55555555555555555555555555555 0000000 5 2 55555555555 3 44 7777 555 55555 7777 44 3 555 4 77777 0 88 4 22 555 4 000000 5 3 0000
lowQualScore : . .. ... ...... .. .... . . ............................. ....... . . ........... . .. .... ... ..... .... .. . ... . ..... . .. . .. ... . ...... . . ....
lowQualScore : 0 55 000 999999 22 8888 7 7 11111111111111111111111111111 6666666 0 2 00000000000 3 66 1111 888 00000 1111 66 3 444 4 22222 4 66 4 44 555 0 222222 0 6 5555
consensus : TACGGAAGCGTAT-TAGGGCCACAT--AAACA---CTTCA---C-TTTTTTTATTTTGCACACTTTTTTCCGTAA-A----AT-----TT--TA-----C------TGTAAAATTTACACTT---T-NATCCGTAAATTTTGCACTTTAA-TC------TGTAAAATTAGCGTAT-TAGGGCCACAT--AAA----CA---CTTCA---NTTT----TT--TT-ATTT---TGC-A-----CTTTT-TTC-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCACTTTAATCTGTAAAA
Reference ( gi|2 ) : TACGGAAGCGTAT-TAGGGCCACAT--AAACA---CTTCA---C-TTTTTTTATTTTGCACACTTTTTTCTGCAA-A----AT-----TT--T------C------TGTAAAATTTACACTT---T-TTTCTGTAAATGTTACACTTT-T-TT------TGTAAAATTAGCGTAT-TAGGGCCACAT--AAA----CA---CTTCA---CTTT----TT--TT-ATTT---TGC-A-----CTTTT-TTC-TGTAAAAGTT-ATACTT-T---A--ATCTGTAA-AATTT---ACACTTTAATCTGTAAAAGA
gi|13 : TACGGAAGCGTAT-TAGGGCCACAT--AAACA---CTTCA---C--TTTTTTATTTTG
gi|10 : TACGGAAGCGTGC-TAGGGCCACAT--AAACA---CTTCAGGTT-TTTTTTTATTTTGCAC
gi|16 : TACGGAAGTGTATCTGCGGCCACAT--AAACA---CTTCA---C-
gi|6 : tTACGGAAGCGTAT-TAGTGCCACAT--TGAAA---TTTTT---T-GTTTTTTATTTT----AATATTTCCCGC---A----CT-----TTGAT------C------TG--ACATTTGCA-TT---T-AATCTGTAAAT
gi|8 : tACGGAAGCGTAT-TAGGGCCATATTAAAACA---CTTCA---CTTTTTTTTATTTTGCAC-TTTTTTTCTGTAA-A----AT-----TT--
gi|11 : ACGGAAGCGTAT-TAGGGCCACAT--AAACACACCTTCA---A-TTTTTTTATTTTGacacattaatctg
gi|12 : ACGGAAGCGTAT-TAGGGCCACAT--ACACA---CTTCA---A-TTATTTTATTTTG
gi|15 : GGAAGCGTAT-TAAGACCACAT--AAACA---CTTCA---C--TTCTTTATTTT
gi|1 : aGAAGCGTAT-TAGGGCCACAT--AAACA---CTTCA---C-TTTTTTTTTTTTTGACACTTTTCCGCGCAACAGT--AC-----TT--TATACTCC------CGTAAAATTTACACTT---TATCTTCATAAAT-TTACACTTT-T-ATATCTGATGTAAATTTGACACTT-TAATCCTGTAG--AAATTACCA---CTTTA---ATGTCAAATT--AC-ATTTTTATGCTAATAACCTTTT-TTCATGTAAAATTTAACACTTCT---T--CTGTGTAACAATTTAACACACTTTAATC-GTAAA
gi|5 : acGTAT-TAGTGGCACAT--AGACA---CTT---------TTTTTATTTTCCAC----TCATCTGTAA-A----ATCACGCTT--T------TAAAACATGTAAAACTTGGGCCT---T-AATCTG-AAAT-TTACACTTTAT-TC------TGTAttaca
gi|14 : attcatTTTTTTATTTTGCTCAC--TTTTCTGTAA-A----AT-----TT--tgag
gi|9 : cATTT---ACACTTTTTTCTGTAA-ATTGNAC-----TT--TAAT---C------TGTAAAATTTACACTT---T-TTTCCGTacacattaatctg
gi|9 : tctgtaaa--T------C------TGTAAAATTTACACTT---T-TTTCTGTAAA--TTGNACTTTAA-TC------TGTAAAATT
gi|3 : GTATATTTTACACTTAAAT-AATCTGTAAATTTTGCACTTC-AATC------TGTAANNNNNNNNNNN-NNNNNNNNNNN--NNN----NN---NNNNN---NNNN----NNNCTT-AATC---TGT-A-----ATTTT----------------GCACTT-C---A--ATATGTAA-ATTTT---ACACTTTAATCTGTAAAAtacacttttttccgt
gi|4 : ATACTT---T-AATCTGTAAATTTTTCACTTG-A-TA------TGTAAAATTCACACTT-T----TTAAAT--AAA----AA---T---A---ATCT----AT--AA-ATCT---TGT-ATA---CTTTG-ATC-TGTAAATTTT-TTGCTT-T---ATAATCTGTAA-AATTT---GCGCTTTAATCTTTAtttgcacttcaatctgtatac
gi|8 : tattttcccccAGCGTAT-TAGGGCCATATTAAAA----CA---CTTCA---CTTT----TT--TTTATTT---TGC-A-----CTTTTTTTC-TGTAAAATTT-ACACAT-T---A--ATCTGtttta
gi|13 : acggaAGCGTAT-TAGGGCCACAT--AAA----CA---CTTCA---C-TT----TT--TT-ATTT---TG
gi|10 : tacggaAGCGTGC-TAGGGCCACAT--AAA----CA---CTTCAGGTTTTT----TT--TT-ATTT---TGC-A-----C
gi|11 : tacggaAGCGTAT-TAGGGCCACAT--AAA----CACACCTTCA---ATTT----TT--TT-ATTT---TG
gi|12 : acggaAGCGTAT-TAGGGCCACAT--ACA----CA---CTTCA---ATTA----TT--TT-ATTT---TG
gi|15 : acggaAGCGTAT-TAAGACCACAT--AAA----CA---CTTCA---C-TT----CT--TT-ATTT---T
gi|16 : aggaAGTGTATCTGCGGCCACAT--AAA----CA---CTTCA---C
gi|6 : ttacggaAGCGTAT-TAGTGCCACAT--TGA----AA---TTTTT---TGTT----TT--TT-ATTT---T---A-----ATATT-TCC-CG----------CACTT-T---G--ATCTG--A-CATTT---GCA-TTTAATCTGTAAA
gi|5 : ttacggaGTAT-TAGTGGCACAT--AGA----CA---CT--------TT----TT--TT-ATTT---TCC-A-----C--TC-ATC-TGTAAAA-TC-ACGCTT-TTAAA--ACATGTAA-AACTT---GGGCCTTAATCTG-AAAt
gi|14 : attcatTT----TT--TT-ATTT---TGC-T-----CACTT-TTC-TGTAAAATTT-ACACAT-T---A--ATCTGtttacactttattctgtatgag
gi|9 : cTT---TAC-A-----CTTTT-TTC-TGTAAA--TT-GNACTT-T---A--ATCTGTAA-AATTT---ACACTTT
gi|9 : tctgtaaaaTC-TGTAAAATTT-ACACTT-T---T--TTCTGTAA-A--TT---GNACTTTAATCTGTAAAAtttccgt
gi|4 : -ATACTT-T---A--ATCTGTAA-ATTTT---TCAC-TTGATATGTAAAAtttacacttttttccgt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ACTTATTNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATTACATTTTTCCCCGTAACAAATTAGCCATATTTTTTTATGATTTATTACTTC
Alignments
lowQualScore : 11111 555555555555555555 111 111111 11 111111111 1111 11111 1111 222222222222 11111 111111 111
lowQualScore : 5 888 22222 2 0 1 000000000000000000 444 444444 999 11 1 8 555555555 5 77 2222 11111 0000 333333333333 888 5 99999 0 0 5 5 33 5 5 111111 6 111
lowQualScore : . ... ..... . . . .................. ... ...... ... .. . . ......... . .. .... ..... .... ............ ... . ..... . . . . .. . . ...... . ...
lowQualScore : 0 888 00000 5 7 0 111111111111111111 000 222222 888 22 4 0 000000000 9 99 1111 66666 6666 666666666666 888 0 44444 4 8 0 0 66 0 0 888888 7 777
consensus : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---TTNTC--CGTAAATTTTGCAC-TTTA-ATC---TGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
Reference ( family-4425 ) : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGTAA----A----ATTT-TA--CT---GTAAAATTTACACTT---TNATC--CGTAAATTTTGCAC-TTTA-ATC---TGTAAAATTAGCGTATTAGGGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCACTTTAATCTGTAAAA
gi|1 : GAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTTTTTTTGACACTTTTCCGCGCAACAGTA----CTTTATA--CTCCCGTAAAATTTACACTT---T-ATCTTCATAAA-TTTACACTTTTATATCTGATGTAAATTTGACACTTTAATCCTGTAG--AAATTACCACTTTAATGTCAAATT--AC--------ATTTTTATGCTAATAACCTTTTTT-CATGTAAAATTTAACACTTCT---T--CTGTGTAACAATTTAACACACTTTAATC-GTAAA
gi|10 : acTACGGAAGCGTGC-TAGGGCCACATAAACA---CTTCAGGTTTTTTTTTATTTTGCACttaca
gi|11 : ACGGAAGCGTAT-TAGGGCCACATAAACACACCTTCA---ATTTTTTTATTTTG
gi|12 : ACGGAAGCGTAT-TAGGGCCACATACACA---CTTCA---ATTATTTTATTTTG
gi|13 : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---C-TTTTTTATTTTG
gi|14 : TT----TT--TT--------ATTT---TGC-T-----CACTTTT-C-TGTAAAATTT-ACACAT-T---A--ATCTG
gi|15 : cGGAAGCGTAT-TAAGACCACATAAACA---CTTCA---C-TTCTTTATTTT
gi|16 : aTACGGAAGTGTATCTGCGGCCACATAAACA---CTTCA---C
gi|2 : tTACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCTGCAA----A----ATTT-T---CT---GTAAAATTTACACTT---TTTTC--TGTAAATGTTACAC-TTTT--TT---TGTAAAATTAGCGTATTAGGGCCACAT--AAA----CACTTCACTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAAGTT-ATACTT-T---A--ATCTGTAA-AATTT---ACACTTTAATCTGTAAAA
gi|3 : ---GTATATTTTACACTTAAATAATC--TGTAAATTTTGCAC-TTCA-ATC---TGTAANNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNNN----NNNCTTAATCTGTAATTT---TGC-A-----CTTCAAT-A-TGTAAATTTT-ACACTT-T---A--ATCTGTAA-AATTT---GCACTTCAATCTGTAga
gi|4 : ATACTT---TAATC--TGTAAATTTTTCAC-TT-G-ATA---TGTAAAATTCACACTTT----TTAAAT--AAA----AAT---AATCT----AT--AA--------ATCT---TGT-ATA---CTTTGAT-C-TGTAAATTTT-TTGCTT-T---ATAATCTGTAA-AATTT---GCGCTTTAATCTTTAtac
gi|5 : tattttcccccGTATTAGTGGCACAT--AGA----CAC-----TTT----TT--TT--------ATTT---TCC-A-----C--TCAT-C-TGTAAAA-TC-ACGCTT-TTAAA--ACATGTAA-AACTT---GGGCCTTAATCTG-AAAtttta
gi|6 : attcatAGCGTATTAGTGCCACAT--TGA----AATTTTTTGTT----TT--TT--------ATTT---T---A-----ATATTTC-C-CG----------CACTT-T---G--ATCTG--A-CATTT---GCA-TTTAATCTGTAAAtttacactttattctgtatgag
gi|8 : ttacggaAGCGTATTAGGGCCATATTAAAA----CACTTCACTTT----TT--TTT-------ATTT---TGC-A-----CTTTTTTTC-TGTAAAATTT-ACACAT-T---A--ATCTGt
gi|9 : acgga--CT---GTAAAATTTACACTT---TTTTC--TGTAAA--TTGNAC-TTTA-ATC---TGTAAAATT
gi|9 : tATTT---ACACTTTTTTCTGTAA----ATTGNACTT-TAATCT---GTAAAATTTACACTT---TTTTC--CGTtacacttttttccgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACTTATTNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATTACATTTTTCCCCGTAACAAATTAGCCATATTTTTTTATGATTTATTACTTC
Alignments
lowQualScore : 11111 555555555555555555 111 111 11 111111111 1111 11111 1111 222222222222 11111 111111 111
lowQualScore : 5 888 22222 2 0 000000000000000000 444 111 777 0 11 1 8 555555555 3 77 2222 11111 0000 333333333333 888 5 99999 0 0 5 5 33 5 5 111111 6 111 0
lowQualScore : . ... ..... . . .................. ... ... ... . .. . . ......... . .. .... ..... .... ............ ... . ..... . . . . .. . . ...... . ... .
lowQualScore : 0 888 00000 5 7 111111111111111111 000 777 333 7 22 4 0 000000000 3 99 1111 66666 6666 666666666666 888 0 44444 4 8 0 0 66 0 0 888888 7 777 7
consensus : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---T-TNTCCGTAAATTTTGCAC-TTTA-ATC---TGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
Reference ( family-4425 ) : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---T-TNTCCGTAAATTTTGCAC-TTTA-ATC---TGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
gi|1 : GAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTTTTTTTGACACTTTTCCGCGCAACAGTA----CTTTATA--CTCCCGTAAAATTTACACTT---TATCTTCATAAA-TTTACACTTTTATATCTGATGTAAATTTGACACTTTAATCCTGTAG--AAATTACCACTTTAATGTCAAATT--AC--------ATTTTTATGCTAATAACCTTTTTT-CATGTAAAATTTAACACTTCT---T--CTGTGTAACAATTTAACACACTTTAATC-GTAAA
gi|10 : acTACGGAAGCGTGC-TAGGGCCACATAAACA---CTTCAGGTTTTTTTTTATTTTGCACttaca
gi|11 : ACGGAAGCGTAT-TAGGGCCACATAAACACACCTTCA---ATTTTTTTATTTTG
gi|12 : ACGGAAGCGTAT-TAGGGCCACATACACA---CTTCA---ATTATTTTATTTTG
gi|13 : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---C-TTTTTTATTTTG
gi|14 : TT----TT--TT--------ATTT---TGC-T-----CACTTTT-C-TGTAAAATTT-ACACAT-T---A--ATCTG
gi|15 : cGGAAGCGTAT-TAAGACCACATAAACA---CTTCA---C-TTCTTTATTTT
gi|16 : aTACGGAAGTGTATCTGCGGCCACATAAACA---CTTCA---C
gi|2 : tTACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCTGCAA----A----ATTT-T---CT---GTAAAATTTACACTT---T-TTTCTGTAAATGTTACAC-TTTT--TT---TGTAAAATTAGCGTATTAGGGCCACAT--AAA----CACTTCACTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAAGTT-ATACTT-T---A--ATCTGTAA-AATTT---ACACTTTAATCTGTAAAA
gi|3 : ---GTATATTTTACACTTAAAT-AATCTGTAAATTTTGCAC-TTCA-ATC---TGTAANNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNNN----NNNCTTAATCTGTAATTT---TGC-A-----CTTCAAT-A-TGTAAATTTT-ACACTT-T---A--ATCTGTAA-AATTT---GCACTTCAATCTGTAga
gi|4 : ATACTT---T-AATCTGTAAATTTTTCAC-TT-G-ATA---TGTAAAATT--CACACT--TTTTAAAT--AAA----AAT---AATCT----AT--AA--------ATCT---TGT-ATA---CTTTGAT-C-TGTAAATTTT-TTGCTT-T---ATAATCTGTAA-AATTT---GCGCTTTAATCTTTAtac
gi|5 : tattttcccccGTATTAGTGGCACAT--AGA----CAC-----TTT----TT--TT--------ATTT---TCC-A-----C--TCAT-C-TGTAAAA-TC-ACGCTT-TTAAA--ACATGTAA-AACTT---GGGCCTTAATCTG-AAAtttta
gi|6 : attcatAGCGTATTAGTGCCACAT--TGA----AATTTTTTGTT----TT--TT--------ATTT---T---A-----ATATTTC-C-CG----------CACTT-T---G--ATCTG--A-CATTT---GCA-TTTAATCTGTAAAtttacactttattctgtatgag
gi|8 : ttacggaAGCGTATTAGGGCCATATTAAAA----CACTTCACTTT----TT--TTT-------ATTT---TGC-A-----CTTTTTTTC-TGTAAAATTT-ACACAT-T---A--ATCTGt
gi|9 : acgga--CT---GTAAAATTTACACTT---T-TTTCTGTAAA--TTGNAC-TTTA-ATC---TGTAAAATT
gi|9 : tATTT---ACACTTTTTTCTGTAA----ATTGNACTT-TAATCT---GTAAAATTTACACTT---T-TTTCCGTtacacttttttccgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACTTATTNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATTACATTTTTCCCCGTAACAAATTAGCCATATTTTTTTATGATTTATTACTTC
Alignments
lowQualScore : 11111 555555555555555555 111 111 11 111111111 1111 11111 1111 222222222222 11111 111111 111
lowQualScore : 5 888 22222 2 0 000000000000000000 444 111 777 0 11 1 8 555555555 3 77 2222 11111 0000 333333333333 888 5 99999 0 0 5 5 33 5 5 111111 6 111 0
lowQualScore : . ... ..... . . .................. ... ... ... . .. . . ......... . .. .... ..... .... ............ ... . ..... . . . . .. . . ...... . ... .
lowQualScore : 0 888 00000 5 7 111111111111111111 000 777 333 7 22 4 0 000000000 3 99 1111 66666 6666 666666666666 888 0 44444 4 8 0 0 66 0 0 888888 7 777 7
consensus : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---T-TNTCCGTAAATTTTGCAC-TTTA-ATC---TGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
Reference ( family-4425 ) : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---T-TNTCCGTAAATTTTGCAC-TTTA-ATC---TGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
gi|1 : GAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTTTTTTTGACACTTTTCCGCGCAACAGTA----CTTTATA--CTCCCGTAAAATTTACACTT---TATCTTCATAAA-TTTACACTTTTATATCTGATGTAAATTTGACACTTTAATCCTGTAG--AAATTACCACTTTAATGTCAAATT--AC--------ATTTTTATGCTAATAACCTTTTTT-CATGTAAAATTTAACACTTCT---T--CTGTGTAACAATTTAACACACTTTAATC-GTAAA
gi|10 : acTACGGAAGCGTGC-TAGGGCCACATAAACA---CTTCAGGTTTTTTTTTATTTTGCACttaca
gi|11 : ACGGAAGCGTAT-TAGGGCCACATAAACACACCTTCA---ATTTTTTTATTTTG
gi|12 : ACGGAAGCGTAT-TAGGGCCACATACACA---CTTCA---ATTATTTTATTTTG
gi|13 : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---C-TTTTTTATTTTG
gi|14 : TT----TT--TT--------ATTT---TGC-T-----CACTTTT-C-TGTAAAATTT-ACACAT-T---A--ATCTG
gi|15 : cGGAAGCGTAT-TAAGACCACATAAACA---CTTCA---C-TTCTTTATTTT
gi|16 : aTACGGAAGTGTATCTGCGGCCACATAAACA---CTTCA---C
gi|2 : tTACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCTGCAA----A----ATTT-T---CT---GTAAAATTTACACTT---T-TTTCTGTAAATGTTACAC-TTTT--TT---TGTAAAATTAGCGTATTAGGGCCACAT--AAA----CACTTCACTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAAGTT-ATACTT-T---A--ATCTGTAA-AATTT---ACACTTTAATCTGTAAAA
gi|3 : ---GTATATTTTACACTTAAAT-AATCTGTAAATTTTGCAC-TTCA-ATC---TGTAANNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNNN----NNNCTTAATCTGTAATTT---TGC-A-----CTTCAAT-A-TGTAAATTTT-ACACTT-T---A--ATCTGTAA-AATTT---GCACTTCAATCTGTAga
gi|4 : ATACTT---T-AATCTGTAAATTTTTCAC-TT-G-ATA---TGTAAAATT--CACACT--TTTTAAAT--AAA----AAT---AATCT----AT--AA--------ATCT---TGT-ATA---CTTTGAT-C-TGTAAATTTT-TTGCTT-T---ATAATCTGTAA-AATTT---GCGCTTTAATCTTTAtac
gi|5 : tattttcccccGTATTAGTGGCACAT--AGA----CAC-----TTT----TT--TT--------ATTT---TCC-A-----C--TCAT-C-TGTAAAA-TC-ACGCTT-TTAAA--ACATGTAA-AACTT---GGGCCTTAATCTG-AAAtttta
gi|6 : attcatAGCGTATTAGTGCCACAT--TGA----AATTTTTTGTT----TT--TT--------ATTT---T---A-----ATATTTC-C-CG----------CACTT-T---G--ATCTG--A-CATTT---GCA-TTTAATCTGTAAAtttacactttattctgtatgag
gi|8 : ttacggaAGCGTATTAGGGCCATATTAAAA----CACTTCACTTT----TT--TTT-------ATTT---TGC-A-----CTTTTTTTC-TGTAAAATTT-ACACAT-T---A--ATCTGt
gi|9 : acgga--CT---GTAAAATTTACACTT---T-TTTCTGTAAA--TTGNAC-TTTA-ATC---TGTAAAATT
gi|9 : tATTT---ACACTTTTTTCTGTAA----ATTGNACTT-TAATCT---GTAAAATTTACACTT---T-TTTCCGTtacacttttttccgt
blockSeqs : C CAC GGTTT C ATTGNACTTTAAT . AAA TT TG A . CAATC A TA . TTCAC . NCTTAATCTGTA . . TA T . AT . . TAAA . .
blockSeqs : . . AT C AATTTT . . AA TT G . TAATC N . . NNNNN . TTT . . . . . AG . . ATA . .
blockSeqs : . . AT . . . AA TT T . TTTT A . . TTTTT . TT . . . . . TT . . A . .
blockSeqs : . . CT . . TT . G . GATA A . . TTCAC . TT . . . . . TT . . A . .
blockSeqs : . . C . TT . . . AA . AA . . . . . AT . . A . .
blockSeqs : . . C . . . . TT . . . . . A . . G
blockSeqs : . . . TT . . . . . . . . A
blockSeqCons : *** TT* TT CGATN**** **** **** *** ***** ***
originalCons : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---T-TNTCCGTAAATTTTGCAC-TTTA-ATC---TGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
finalCons : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---TTT-TCCGTAAATTTTGCAC-TTCGATN----TGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACTTATTNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATTACATTTTTCCCCGTAACAAATTAGCCATATTTTTTTATGATTTATTACTTC
Alignments
lowQualScore : 11111 555555555555555555 111 111 11 2222222222 1111 11111 1111 222222222222 11111 111111 111
lowQualScore : 5 888 22222 2 0 000000000000000000 444 111 888 0 11 1 8888888888 3 77 2222 11111 0000 333333333333 888 5 99999 0 0 5 5 33 5 5 111111 6 111 0
lowQualScore : . ... ..... . . .................. ... ... ... . .. . .......... . .. .... ..... .... ............ ... . ..... . . . . .. . . ...... . ... .
lowQualScore : 0 888 00000 5 7 111111111111111111 000 777 555 7 22 4 8888888888 3 99 1111 66666 6666 666666666666 888 0 44444 4 8 0 0 66 0 0 888888 7 777 7
consensus : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---T-TNTCCGTAAATTTTGCACTTTNAT-----NTGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
Reference ( family-4425 ) : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCCGCAA----A----ATTT-TA--CT---GTAAAATTTACACTT---T-TTTCCGTAAATTTTGCACTTCGAT-----NTGTAAAATTAGCGTATTAGTGCCACAT--AAA----CACTTCANTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAATTT-ACACTT-T---A--ATCTGTAA-AATTT---GCGCTTTAATCTGTAAAA
gi|1 : GAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTTTTTTTGACACTTTTCCGCGCAACAGTA----CTTTATA--CTCCCGTAAAATTTACACTT---TATCTTCATAAA-TTTACACTTTTATATCTGATGTAAATTTGACACTTTAATCCTGTAG--AAATTACCACTTTAATGTCAAATT--AC--------ATTTTTATGCTAATAACCTTTTTT-CATGTAAAATTTAACACTTCT---T--CTGTGTAACAATTTAACACACTTTAATC-GTAAA
gi|10 : acTACGGAAGCGTGC-TAGGGCCACATAAACA---CTTCAGGTTTTTTTTTATTTTGCACttaca
gi|11 : ACGGAAGCGTAT-TAGGGCCACATAAACACACCTTCA---ATTTTTTTATTTTG
gi|12 : ACGGAAGCGTAT-TAGGGCCACATACACA---CTTCA---ATTATTTTATTTTG
gi|13 : TACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---C-TTTTTTATTTTG
gi|14 : TT----TT--TT--------ATTT---TGC-T-----CACTTTT-C-TGTAAAATTT-ACACAT-T---A--ATCTG
gi|15 : cGGAAGCGTAT-TAAGACCACATAAACA---CTTCA---C-TTCTTTATTTT
gi|16 : aTACGGAAGTGTATCTGCGGCCACATAAACA---CTTCA---C
gi|2 : tTACGGAAGCGTAT-TAGGGCCACATAAACA---CTTCA---CTTTTTTTATTTTGCACACTTTTTTCTGCAA----A----ATTT-T---CT---GTAAAATTTACACTT---T-TTTCTGTAAATGTTACACTTTT-T-----TTGTAAAATTAGCGTATTAGGGCCACAT--AAA----CACTTCACTTT----TT--TT--------ATTT---TGC-A-----CTTTTTT-C-TGTAAAAGTT-ATACTT-T---A--ATCTGTAA-AATTT---ACACTTTAATCTGTAAAA
gi|3 : ---GTATATTTTACACTTAAAT-AATCTGTAAATTTTGCACTTCAAT-----CTGTAANNNNNNNNNNNNNNNNNNNNNN--NNN----NNNNNNNNNNN----NNNCTTAATCTGTAATTT---TGC-A-----CTTCAAT-A-TGTAAATTTT-ACACTT-T---A--ATCTGTAA-AATTT---GCACTTCAATCTGTAga
gi|4 : ATACTT---T-AATCTGTAAATTTTTCACTT-GAT-----ATGTAAAATT--CACACT--TTTTAAAT--AAA----AAT---AATCT----AT--AA--------ATCT---TGT-ATA---CTTTGAT-C-TGTAAATTTT-TTGCTT-T---ATAATCTGTAA-AATTT---GCGCTTTAATCTTTAtac
gi|5 : tattttcccccGTATTAGTGGCACAT--AGA----CAC-----TTT----TT--TT--------ATTT---TCC-A-----C--TCAT-C-TGTAAAA-TC-ACGCTT-TTAAA--ACATGTAA-AACTT---GGGCCTTAATCTG-AAAtttta
gi|6 : attcatAGCGTATTAGTGCCACAT--TGA----AATTTTTTGTT----TT--TT--------ATTT---T---A-----ATATTTC-C-CG----------CACTT-T---G--ATCTG--A-CATTT---GCA-TTTAATCTGTAAAtttacactttattctgtatgag
gi|8 : ttacggaAGCGTATTAGGGCCATATTAAAA----CACTTCACTTT----TT--TTT-------ATTT---TGC-A-----CTTTTTTTC-TGTAAAATTT-ACACAT-T---A--ATCTGt
gi|9 : acgga--CT---GTAAAATTTACACTT---T-TTTCTGTAAA--TTGNACTTTAAT-----CTGTAAAATT
gi|9 : tATTT---ACACTTTTTTCTGTAA----ATTGNACTT-TAATCT---GTAAAATTTACACTT---T-TTTCCGTtacacttttttccgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACTTATTNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATTACATTTTTCCCCGTAACAAATTAGCCATATTTTTTTATGATTTATTACTTC