lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 222 77777777777777777777777777777 1 111111 111 2 111 11 1111 1 22222 1111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3333333333333 1 222 1 11 33333333333 222222222222222222222 11111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111 1111 111111 44444 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333
lowQualScore : 0 3 222 6 99 1 77777777777777777777777777777 6 0 1 666666 6 111 6 6 0 6 0 111 6 8 22 8888 0 11111 5555 9 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 6 1 7777 1111111111111 77 8 5 1 000 3 5 5 1 22 6 00 8 44444444444 777777777777777777777 33333 77 4 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4444444444 9 0 0000 222222 11111 4 4 4 4 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 66 2 66 5 22 888888
lowQualScore : . . ... . .. . ............................. . . . ...... . ... . . . . . ... . . .. .... . ..... .... . . ...................................................................................................................... . . . .... ............. .. . . . ... . . . . .. . .. . ........... ..................... ..... .. . .................................................................................................. .......... . . .... ...... ..... . . . . . .................................................................................... .. . .. . .. ......
lowQualScore : 0 0 999 7 22 0 55555555555555555555555555555 0 8 0 222222 7 000 7 7 0 7 7 888 7 0 55 8888 0 00000 0000 8 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 7 0 3333 1111111111111 99 6 7 7 000 6 7 7 3 55 7 44 0 33333333333 888888888888888888888 77777 99 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333 8 4 6666 888888 99999 0 0 0 0 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 7 11 0 11 777777
consensus : ATCTCT-TGNCANAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TTAT---TTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GA-AA-T-CATGAGAAAATCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNNAGATTATCAGG---A-T-ATTTACT----TG-T---CCT-------------TNTTA--GCATGC-TTAT----------CAACTGC----------C-AGGGAACT--------AT----TTA-C---TACA-CTGTAACAAGGGATTAT-A-AT--CA-T-CGTAAATTG--CATGGCA-GTTTAA--TTTTG-AA-GAGCATCA-ACTTTTTTATAC-ATC--------GT-GTACAT----ACCTT-----TTGAA-TAT-T---ACC--CCCCCCCCCCCTCT----CT-TTTTTT---CGCGTG-CCA---A-A--TTTGTNTAA--TAC-TATA-C--T----AAT-AA---C---------C-T-GGTT--TTAATCGAGT--TAC-AAATTGTCTAGCCGGTTA----GCAC------TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGC-CATCCGT------------AT-ANT-T--AACTCAT--ACGTT-CCCAT--CTT-T--A-T--TATA-CATCCA--AA-AGCTCGG-A--TAC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A-T--TTACGAAA
Reference ( gi|3 ) : ATTTCT-TAACAAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT-T---TTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GA-AA-T-CATGAGAAAACCA--TG-CA-TG-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG---A-T-A--TACT----TG-T---CCT-------------TTTTACCGCATGC-TTATG---------CAA--------------C-AGGGAACT--------AT----TTA-C---TACA-CTGTAACAAGGAATTAT-A-AT--CA-T-CGTAAATTG--TATCGCA-GTTTAA--TTTTG-AA-GAGAATCA-ACTTTTTTATAC-ATC--------AT-GTACAT----ACCTT-----TTGAA-CAT-T---ACC--CCCCCCCCCCCTCT----CT-TTTTTT---CGCGTGACCA---A-A--TTTGTGTAAGGTAC-TGTA-T--T----AAT-AA---C---------C-T-GATT--TTAATCGAGT--TAA-AAATTATCTAGCCGGTTA----GCAC------TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCGT-----------GAT-AGTGT--AACGCAT--ATGTT-CCCATTTCTT-T--A-T--TATA-CATCCA--AA-AGCTTGG-ATTTAC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATT--TTACGAAAGAT
gi|2 : ATCTCT-TACCAGA---AT-GT--ACATGT-TAT---T-AATTGG-----------TT-A---TTACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGA-AA-TTCATGATAAA-TCA--TG-CA-T--TGCAGCAA-TTCTT-AT-CAA-CTCGCAAGATATTCAGGTAAA-T-ATTTACT----TGTT---CCTAGCTTGTAGTTTATTTTA--GCATGCTTTATACCAGCCTACCAACTGCCATGACTTTTC-AAAGATCG--------AT----TGACC---TGCA-T--TAATAAAAAAATAT-A-AT--CA-T-CTT-AATTGGACATGGTA-GTGTAATCTTTCG-AA-GAGCACCA-ACTTT
gi|16 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatATCTCT-GACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TTAT---TTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GA-AATT-CATGAGAAAATCgata
gi|7 : tgaattttgtgacgtgtTTCTCTGACAC-GAAAT-GT--ACACGTATAC---ATA-------------------T---TTACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATAT-T-CATGAGAAAACCATGTG-CA-TG-TGCAGCACTGTCCT-TT-A-G-CT--GTAGTTTATT------T-T-A--CACA----TG-TATGCCT-------------TAT----ACA-GC-TTAT-----------AACTGT----------C-AGGGAACT--------
gi|15 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcaTTTT-TGACCA-GAAAT-GTTCATATGTATACATATTAATTGTAC---------TTAT---TTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GA-AATT-CATGAGGAAACAA--TG-Cttcaaagatcga
gi|13 : ttctctgattttgtgtgacgtgaaAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTTAT---TTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GA-AAGT-CATGAGAAAATCA--TG-CA-T
gi|1 : tctctaactttgtgtgacgtgtatctctgaccAATCGT--A-ACGTATGT---T-ACTTGT-C---------CT-TAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGGAA-TTATAGT-GA-AA-T-CAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG---ATT-ATTTACT----GG-T---CCT-------------
gi|4 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacat-CA-TGATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGG---G-TAA--TACTGTACTG-T---CCT-------------acctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|1 : GC-CTAT-----------AA--------------CTAGGGAACTTTTCAAAAATCGAATTA-CCT-TACAACTGTAGCAAGGA-TTGT-A-AT--CA-T---------G--CATGGCA-GTTTAA--TTTGA-AA-GACCATCACACTGTTTCTTAC-CTC-----------GTCAAT----ACCGT-----TTA----AT-T---TCC--CCCCCC------CT----CT-TT--------GTATGACCA---A-T--ATCATGTTGTTTACTTATA-C--T----AAT-AA---TGTGGTAACAC-T-GATT-----ATCGCGT--AAA-AAATTTTC-AGTCGgctacatgtagctgtagtatttataacgcatgccttataagcttatacgccatgcagggacgtttcaaaggtcgaatttacctgcactgtaacaagggattaatacgtaattgcatggcagtttaatttgacgagtatcaacttttaatacatcctgtatatatatacatacctttgaatattaccccccccccctcttttttcgtgtgccaatatttgtttaagtactgtactaataacctggttaatcagttacaaattgtctagccggttagcactttaaaccgagtactcagttattcggctaatcattgccatccgtttgtatttaacgcatgtatgttcccatctttattatatcaaaagcttgggataccgtcccgcacgaacgacaactcgtataagcaagaattacgaaa
gi|5 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttatagATT---------CAA--------------A-GAGGAAGT---------T----TTA-CACCTACT-GTGTAACAAGGGATTATCA-AT--CAAT-CGTAA-TTG--CATGGCA-GTTTA----TTTGTAA-AAGCAG-A-ACTGTTATATACGATC--------GTTATACAT----AC--T-----TTGAA-TAT-A---ACC--CTTCCCTCCCTTCT----CT-TTTTTT---C---TGGGCG---------TTGTGCCA-ATAC-CATACT--T----AATAAA---C---------C-TGGA----TTGATCGGTT--TAC-AAATTGT-TAGCAGGTTA----GCAC------TTTAAACGC--AGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCGT-----------GTT-ATTCA--AACG-AC--A-------CATTAC-------------TA-CAACTA--AATAATTGGG-A--TACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-ATT--AAGCGAAA
gi|4 : tgctttataccgcttataactgcaagga--------AT----TTA-CC--TGCA-CTGTAACAAGGGATTA---------A-TACGTAA-TTG--CATGGCA-GTTTAA--TTT-G-AC-GAGTATCA-ACTTTTA-ATAC-ATCCTGTATATAT-ATACAT----ACCTT-----T-GAA-TAT-T---ACC--CCCCCCCCCTCT----------TTTTT---CGTGTG-CCA---ATA--TTTGTTTAAG-TAC-TGTA-C--T----AAT-AA---C---------C-T-GGTT----AATC-AGT--TAC-AAATTGTCTAGCCGGTTA----GCAC------TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGT-------------T-TGTATTTAACGCATGTATGTT-CCCAT--CTT-T--A-T--TATA-T---CA--AA-AGCTTGGGAT--AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A----TTACGAAAtctc
gi|25 : catgatgcagcatttcttatcaactagacaaattatcagggtaatactgtactgtcctgctacatgtagctgtagtatttataacgcatgccttataagcttatacgccatgcagggacgtttcaaaggtcgaT----TAA-C---TTCA-CTGTAACAAGGGATTAG-ATAT-----T-CGT-AATTG--TATGACA-G-TTAA---TTTG-AA-GAG
gi|18 : -C---TACA-CTGTAACAAGGGATTAT-A-AT--CA-A-TGT-AATTG--TATGGCT-GTTTAA---TTTG-AA-GAGCATCA-AC-TTTTTATTC-ATC--------TT-GTACAT----ACC-T-----CTGCA-TAT-T---ACC--CCCCCCCCCCca
gi|8 : tacT-A-ATTACA-T-TGTA---TG--TAT-GCATGATTGA--ATCTA-AATGGGAGGTA---TTTTTAAAAC-ATC--------AT-CTACATGTAGACCTTCCCAGTTGAATCATGTCCAACCATCCCCTCTCGCCTCC----CC-CCCCCC---CCCCCCACCC---A-TCTTTTACGTA--GTAC--ATA-T--TTGCTAAT-AAAGCC---------C-T-GGTTAATTAGTAAA-----AA-AAATT--CTAATCAGTTT----GCAA------TTTTTGGACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCCT------------ATGAGTAT------CAT--A--------ATTTTTT-TAAA-T--TA-G-CATTCA--GG-AGTT
gi|9 : TC--------GT-GTATATT---ACCTG-----T-GAA--AT-T---ACC--CCCCCCCTC------------TTGTTT---CGTGTG-CCA---ATA--TTTGTTTAAG-TAC-TCTA-C--T----AAT-AA---C---------CAT-GAT-----AATCG-GTGATGACAAATTGTCTATCCGGCTA----GCGC------TT-AA--ACCGAGT-ACTCAGTTAATCA-CTAAT-CAGTTGC-CATGCGT-----------TGT---TTT--AATGCAT--ATGTT-CC-AT--CTTGT--A-T--AATA-CATC-A--AA-AGCTTGG-GATAAC--CGTCCCGCACGAGCACGACAAC
gi|17 : --CCCCCCTCCCCTCTTCCCCTATTTTTTAAACACATGTGCATGTA-A--TTTGTTTAA-ATAC-TATA-TAAT----AAT-AA---C---------C-T-GG----TCAATCG-GT--TAC-AAA-TGCCAAGCCAGTTG----ACAT------TTT
gi|26 : atatAGT--TAC-AAATTATCTTGCCAATTA----GCAC------TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|12 : T--TAC-AAATTGTCTAACCAGTTACCGGGTACAACAATTTTAA---CCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCAT-----------
gi|10 : cgtttatagcgtggcaagtttgacattcttggttttgtacaagtaacacagtgaaccgtCGGTTA----G-AT------TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCGT-----------TAT-ATT-T--AGCTCAT--GCATC-CCCAC--CTT-C--A-TAATGTA-C-TCCA--AA-AGTTCCG----TAC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A----GTACGGAA
gi|11 : ------TTTAAAC---GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCGTTATGTATTAACAAT-AAT-T--AATTTAT--ATATTACCCAC--CTT-T--A-TC-TATAATATCAA--AA-ATCTTGG--TATAC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|14 : CTG-GT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCTT-----------G-T-ATCG---AATTCGT--GCATT-CCCA--TCTT-T--A-T--CATA-CACCTACTAA-GGTTCAG-A--TGC--TGTCCCACATGG--ATGACAACT-CGT-TAGAC-----ATTTATTACGAAA
gi|20 : T-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACAT--CTT-T--A-T--------AT--------AGCTTGGGAT--AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA---T--TTACGAAAtt
gi|22 : CGGCTAAT-C-GTTGG-AATCC--------------AT-AGT-----ACTC--------T-CCTAT--CTT-T--AAC--TAT--CAAC----AA-AGC-----------------CCACACGA--ACGACAACC-CGTACAAGCAAGGCA----TTACGAAA
gi|24 : --ATATT-CCCAC--CTT-T--A-T--TATA-TATC---------------A---AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A----TTACGAAAat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 1 1111 33333333333333333333333 111111 2 11111 3333333333333 111 99999999999999999999999999999999999999999999999999999999999999999 3333333333333333333333 111 111 222222222 2222222 1111111 44444444444444444444444444444444 11 44444444444444 1111 11111111 44444444444444444444444444444444444 1111111111111111 2222222222 22
lowQualScore : 5 1 1111 5 77 77777777777777777777777 77 7 222222 666 7 5 5 2 0 99 5 6 8 66 8 8 33333 5 22 6 3333333333333 6 8 444 77777777777777777777777777777777777777777777777777777777777777777 0000000000000000000000 5 1 555 5 0 5 888 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 9999999 8888888 00000000000000000000000000000000 0 5 11 5 888 5 88888888888888 6666 9999 11111111 66 2 3 1 3 3 44 33333333333333333333333333333333333 55 55 3 88 4444444444444444 3 2 1111111111 55 1 55 4 2 33 5
lowQualScore : . . .... . .. ....................... .. . ...... ... . . . . . .. . . . .. . . ..... . .. . ............. . . ... ................................................................. ...................... . . ... . . . ... .. ... . . . .. . . .. ......... . . . . .. . ....... ....... ................................ . . .. . ... . .............. .... .... ........ .. . . . . . .. ................................... .. .. . .. ................ . . .......... .. . .. . . .. .
lowQualScore : 4 0 9999 7 99 44444444444444444444444 99 9 666666 111 9 7 7 9 1 22 7 7 0 44 8 0 00000 0 00 0 0000000000000 0 0 000 44444444444444444444444444444444444444444444444444444444444444444 8888888888888888888888 7 7 999 7 7 7 333 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 1111111 9999999 99999999999999999999999999999999 4 8 99 0 888 0 99999999999999 9999 4444 44444444 11 9 6 0 6 6 66 88888888888888888888888888888888888 00 00 6 66 0000000000000000 6 6 7777777777 55 4 55 4 2 88 0
consensus : ATCTCTTGACACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-T-ATCATTGGAAATCATA-TTGA-AATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AA-TATT-T--ACTTG-T---CCT-------------TTT-TA--GCATGCT-----------TAT-CAACTGCCAGGA-TT---A-A-GAACT--------AT----TTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCCT-TTTTTT---C---GCGTG-C-CA---ATAT----TTG-----T-TTAAG-TACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCGA--GTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGAA--TTA-CGAAA
Reference ( family-4318 ) : ATCTCTTGNCANAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-T-ATCATTGGAAATCATA-TTGA-AA-TCATGAGAAAATCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNNAGATTATCAGG---A-TATT-T--ACTTG-T---CCT-------------TNT-TA--GCATGCT-----------TAT-CAACTGCCAGG-----------GAACT--------AT----TTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CTCT-TTTTTT---C---GCGTG-C-CA---A-AT----TTG-----T-NTAA--TACTATAC--TAAT-AA---CC-TGGT--------T--TTAATCGA--GTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGC-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGAA-TTTA-CGAAA
gi|1 : ATCTCT-GACATA---ATCGT--A-ACGTATGT---T-ACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCT-AT-ATTGGAA-TTATA-GTGA-AA-TCAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG---ATTATT-T--ACTGG-T---CCT-------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------TTTATA--G---GCC-----------TAT--AACT---AGG-----------GAACTTTTCAAAAATCGAATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C--------TT---T---GTATGAC-CA---ATATCATGTTG-----T-TTAC--T--TATAC--TAAT-AA---TG-TGGTAACACTGAT--T--ATCGC--GTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCG--TT-----------ATA-TT-TAGCTCA--TGCATC-CCCA--CCTT-C--ATAATG-T-AC-TCCA--AA-AGTTC-CG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGAA--GTA-CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCG--TTATGTATTAACAATA-AT-TAATTTA--TATATTACCCA--CCTT-T--ATC-TA-TAATATCAA--AA-ATCTT-GGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT---A---GCGTG-G-CA---A-GT----TTGACATTC-TTGG--TTTTGTAC--AAGT-AA---CA-CAGT--------G----AACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCA--T------------
gi|13 : cgATCTCT-GAC-CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-T-ATCATTGGAAATCATA-TTGA-AAGTCATGAGAAAATCA--TG-CA-T
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCT--T------------GTA-TC-GAATTCG--TGCATT-CCCA--TCTT-T--AT--CA-T-ACACCTACTAA-GGTTC-AG-A--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTTA--TTA-CGAAA
gi|15 : ctgTTTTGAC-CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-T-AT-ATTGGAAATCATA-TTGA-AATTCATGAGGAAACAA--TG-Ctt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCTGACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-T-ATCATAGGGAATTATA-TTGA-AATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCCTATTTTTTAAAC---ACATG-TGCATGTA-AT----TTG-----T-TTAAA-TACTATATAATAAT-AA---CC-TGG------------TCAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGT-AATTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTTACCAGA---AT-GT--ACATGT-TAT---T-AATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGA-AATTCATGAT-AAATCA--TG-CA-T--TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAA-TATT-T--ACTTGTT---CCTAGCTTGTAGTTTATTT-TA--GCATGCTTTATACCAGCCTAC-CAACTGCCATGACTTTTCAAA-GATCG--------AT----TGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTT-AATTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACA--TCTT-T--AT---------AT--------AGCTT-GGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAG-A-TTTA-CGAAAgata
gi|22 : CGGCTAAT-C-GTTGG-AATCC----------------ATA-GT---ACTC--------T-CCTA--TCTT-TA-AC--TA-T--CAAC----AA-AG-------------------CCCACACGA--ACGACAACC-CGTACAAGCAAGGC-ATTA-CGAAA
gi|24 : TT-CCCA--CCTT-T--AT--TA-T-ATATC----------------A----AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGAA--TTA-CGAAAat
gi|25 : ataT----TAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGT-AATTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : A--GTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAACAAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-T-ATCATTGGAAATTATA-TTGA-AA-TCATGAGAAAACCA--TG-CA-TG-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG---A-TAT-----ACTTG-T---CCT-------------TTT-TACCGCATGCT-----------TATGCAAC----AGG-----------GAACT--------AT----TTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTCT-TTTTTT---C---GCGTGAC-CA---A-AT----TTG-----T-GTAAGGTACTGTAT--TAAT-AA---CC-TGAT--------T--TTAATCGA--GTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCG--TG-----------ATA-GTGTAACGCA--TATGTT-CCCATTTCTT-T--AT--TA-T-ACATCCA--AA-AGCTT-GG-ATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGAATTTTA-CGAAA
gi|4 : -CA-TGATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAA-TACTGT--AC-TG-T---CCT-------------gat
gi|4 : --------AT----TTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT--------TTTTT---C---GTGTG-C-CA---ATAT----TTG-----T-TTAAG-TACTGTAC--TAAT-AA---CC-TGGT--------T----AATC-A--GTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGTTT------------GTA-TT-TAACGCATGTATGTT-CCCA--TCTT-T--AT--TA-T-A---TCA--AA-AGCTTGGG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGAA--TTA-CGAAAgctacatgtagctgtagtatttataacgcatgccttataagcttatacgccatgcagggacgtttcaaaggtcgaatttacctgcactgtaacaagggattaatacgtaattgcatggcagtttaatttgacgagtatcaacttttaatacatcctgtatatatatacatacctttgaatattaccccccccccctcttttttcgtgtgccaatatttgtttaagtactgtactaataacctggttaatcagttacaaattgtctagccggttagcactttaaaccgagtactcagttattcggctaatcattgccatccgtttgtatttaacgcatgtatgttcccatctttattatatcaaaagcttgggataccgtcccgcacgaacgacaactcgtataagcaagaattacgaaa
gi|5 : catgatgcagcatttcttatcaactagacaaattatcagggtaatactgtactgtcctgctacatgtagctgtagtatttataacgcatgccttataagcttatacgccatgcagggacgtttcaaaggtcgaGCT-----------TAT--AACTGCAAGGAATTCAAAGAGGAAGT---------T----TTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTCT-TTTTTT---CTGGGCG------------------TTG-----TGCCAA--TACCATACT-TAATAAA---CC-TGG---------A--TTGATCGG--TTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCG--T----------------GT-T-ATTCA--AACG----ACA-------C--AT--TACT-ACAACTA--AATAATTG-GG-A--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAAA-TTAAGCGAAA
gi|7 : tgctttataccTCTCT-GACAC-GAAAT-GT--ACACGTATA-------------C---------AT--ATTTACCAAATATCATAA--T---GG-A-ATAATGGGAAATTATA-TTGATAT-TCATGAGAAAACCATGTG-CA-TG-TGCAGCACTGTCCT-TT-A-G-CT--GTAGTTTAT-----------TT-TACACATG-TATGCCT-------------TAT-----ACA-GCT-----------TAT--AACTGTCAGG-----------GAACT--------tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCA-TCTTTT-------ACGTA------------------G-----T-AC-A--TATT-TGC--TAAT-AAAGCCC-TGGT--------TAATTAGTAAA-----AAAAAT--TCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCC--T------------ATG-AG-TA--TCA--TA-ATT-------TTTT-TAAAT--TA---GCATTCA--GG-AGTTttcaaagatcga
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC----------TTGTTT---C---GTGTG-C-CA---ATAT----TTG-----T-TTAAG-TACTCTAC--TAAT-AA---CCATGAT-------------AATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C-----TT-AA--ACCGAGT-ACTCAGTTAATC-ACTAAT-CAGTTGC-CATGCG--T-------------TGTTT-TAATGCA--TATGTT--CCA--TCTTGT--AT--AA-T-ACAT-CA--AA-AGCTTGGG-A--TAAC--CGTCCCGCACGAGCACGACAAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 33333333333333333333333 111111 111 11111 2222 11111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222 111 111 222222222 33333333 22222222222222 1 1111 1111 11111111111 44444444444444 1111 11111111 44444444444444444444444444444444444 1111111111111111 2222222222
lowQualScore : 9 77 0 5 77 77777777777777777777777 77 7 222222 5 5 7 5 5 0 99 5 444 66 8 8 33333 5 66 6 8888 88 99999999 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 333 5 1 555 5 0 5 888 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 00000000 22222222222222 0 2 2222 0000 77777777777 1 7 66 5 888 5 88888888888888 6666 9999 11111111 66 2 3 1 3 3 3 33333333333333333333333333333333333 55 55 3 55 3 4444444444444444 3 1111111111 55 1 55 4 5 66 66
lowQualScore : . .. . . .. ....................... .. . ...... . . . . . . .. . ... .. . . ..... . .. . .... .. ........ .................................................................................................... . ... . . ... . . . ... .. ... . . . .. . . .. ......... . . . . .. . ........ .............. . . .... .... ........... . . .. . ... . .............. .... .... ........ .. . . . . . . ................................... .. .. . .. . ................ . .......... .. . .. . . .. ..
lowQualScore : 0 77 7 7 99 44444444444444444444444 99 9 666666 7 7 9 7 0 1 22 7 777 44 8 0 00000 0 66 0 6666 88 88888888 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 666 7 7 999 7 7 7 333 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 99999999 11111111111111 0 5 0000 6666 00000000000 4 6 99 0 888 0 99999999999999 9999 4444 44444444 11 9 6 0 6 6 6 88888888888888888888888888888888888 00 00 6 00 6 0000000000000000 6 7777777777 55 4 55 4 0 99 99
consensus : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TGC-AT-G-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-T-----------TAT--AACT-----GCCA-----GGA-----TC-----AA----GAA-CT---ATTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--A-T--TA-TA-CATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
Reference ( family-4318 ) : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TGC-AT-G-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-T-----------TAT-CAACT-----GCCA-----GGA-----TT-----AA----GAA-CT---ATTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--A-T--TA-TA-CATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
gi|1 : ATCTCT-GAC-ATA---ATCGT--A-ACGTATGT---T-ACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGGAA-TTATAGT-GAAAT-CAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG--ATTATT-TAC---T-GG-TCCT-------------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------------TTTATA--G---GC-C-----------TAT--AACT-----A--G-----GGAACTTTTC-----AA----AAATCG---AATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C---------TT-----T---GT---ATGACCAAT---ATCATGTTG----TTTAC-TTA---TAC--TAAT-AA---TG-TGGTAACACTGAT--T--ATCG--CGTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCG--TT-----------ATA-TT-TAGCTCA--TGCATC-CCCA--CCTT-C--A-TAATG-TA-C-TCCA--AA-AGTTC-CG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A--GTA--CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCG--TTATGTATTAACAATA-AT-TAATTTA--TATATTACCCA--CCTT-T--A-TC-TA-TAATATCAA--AA-ATCTT-GGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT-----A---GC---GTG-GCAA----GT----TTGACATTCTTG-GTTTTGTAC--AAGT-AA---CA-CAGT--------G----AACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCA--T------------
gi|13 : cgATCTCT-GAC--CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAAGTCATGAGAAAATCA--TGC-AT-
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCT--T------------GTA-TC-GAATTCG--TGCATT-CCCA--TCTT-T--A-T--CA-TA-CACCTACTAA-GGTTC-AG-A--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTT-A--TTA--CGAAA
gi|15 : ctgTTTTGAC--CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GAAATTCATGAGGAAACAA--TGC-tt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCT-GACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GAAATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCC-TATTTTTTAAACAC---AT---GTG-C--ATGTAAT----TTG----TTTAA-ATACTATATAATAAT-AA---CC-TGG------------TCAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGT-AATTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTT-AC--CAGAA-T-GT--ACATGT-TAT---T-AATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGAAATTCATGAT-AAATCA--TGC-AT---TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAATATT-TAC---T-TGTTCCTAGCTTGTAGTTTA------TTT-TA--GCATGC-TTTATACCAGCCTAC-CAACT-----GCCA-----TGA-----CTTTTCAAA----GAT-CG---ATTGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTT-AATTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACA--TCTT-T--A-T---------AT--------AGCTT-GGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA-T--TTA--CGAAAgata
gi|22 : CGGCTAAT-C-GTTGG-AATCC----------------ATA-GT---ACTC--------T-CCTA--TCTT-T--AAC--TA-T--CAAC----AA-AGC-------------------CCACACGA--ACGACAACC-CGTACAAGCAAGGCA--TTA--CGAAA
gi|24 : TT-CCCA--CCTT-T--A-T--TA-TA-TATC----------------A----AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A--TTA--CGAAAat
gi|25 : ataTTAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGT-AATTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : --AGTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAAC-AAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GAAAT-CATGAGAAAACCA--TGC-AT-G-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG--A-TAT---AC---T-TG-TCCT-------------------TTT-TACCGCATGC-T-----------TATGCAAC---------A-----GG-------------------GAA-CT---ATTTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTC-T-TTTTTT-----C---GC---GTGACCAA----AT----TTG----TGTAAGGTACTGTAT--TAAT-AA---CC-TGAT--------T--TTAATCG--AGTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCG--TG-----------ATA-GTGTAACGCA--TATGTT-CCCATTTCTT-T--A-T--TA-TA-CATCCA--AA-AGCTT-GG-ATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATTTTA--CGAAA
gi|4 : C-AT-GATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAATACTGTAC---T--G-TCCTGCTACATGTAGCTGTAGTATTTATAACGCATGCCT-----------TAT-AAGCTTATACGCCATGCAGGGACGT--TT-----CA----AAG-GTCGAATTTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT---------TTTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T----AATC---AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGTTT------------GTA-TT-TAACGCATGTATGTT-CCCA--TCTT-T--A-T--TA-TA----TCA--AA-AGCTTGGG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAAgat
gi|5 : CT-------------------TTA-TA--CC--GC-T-----------TAT--AACT-----GCAA-----GGAAT---TC-----AAAGAGGAA-GT----TTTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTC-T-TTTTTT-----CTGGGCGTTGTG-CCAAT---AC----C------------ATACT------TAATAAA---CC-TGG---------A--TTGATCG--GTTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCG--T----------------GT-T-ATTCA--AACG----ACA-------C--A-T--TACTA-CAACTA--AATAATTG-GG-A--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-A--TTAAGCGAAA
gi|7 : tgTCTCT-GAC-AC-GAAAT-GT--ACACGTATA-------------C---------AT--ATTTACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATATTCATGAGAAAACCATGTGC-AT-G-TGCAGCACTGTCCT-TT-A-G-CT-GT-AGTTTAT----------TT-TACACATGTA-TGCC-------------------TTA-TA---CA-GC-T-----------TAT--AACT-----GTCA-----GG-------------------GAA-CT---tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCAT-CTTTTA-----C---GTA--GTA-C--AT---AT----TTG------------------C--TAAT-AAAGCCC-TGGT--------TAATTAGTAA--A---AAAAAT--TCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCC--T------------ATG-AG-TA--TCA--TA-ATT-------TTTT-TAAA-T--TA--G-CATTCA--GG-AGTTttcaaagatcga
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC-----------TTGTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTCTAC--TAAT-AA---CCATGA-------------TAATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C------TTAA--ACCGAGT-ACTCAGTTAATC-ACTAAT-CAGTTGC-CATGCG--T-------------TGTTT-TAATGCA--TATGTT--CCA--TCTTGT--A-T--AA-TA-CAT-CA--AA-AGCTTGGG-A--TAAC--CGTCCCGCACGAGCACGACAAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 33333333333333333333333 111111 111 11111 2222 11111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222 111 111 222222222 33333333 22222222222222 1 1111 1111 11111111111 44444444444444 1111 11111111 44444444444444444444444444444444444 1111111111111111 2222222222
lowQualScore : 9 77 0 5 77 77777777777777777777777 77 7 222222 5 5 7 5 5 0 99 5 444 66 8 8 33333 5 66 6 8888 88 99999999 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 333 5 1 555 5 0 5 888 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 00000000 22222222222222 0 2 2222 0000 77777777777 1 7 66 5 888 5 88888888888888 6666 9999 11111111 66 2 3 1 3 3 3 33333333333333333333333333333333333 55 55 3 55 3 4444444444444444 3 1111111111 55 1 55 4 5 66 66
lowQualScore : . .. . . .. ....................... .. . ...... . . . . . . .. . ... .. . . ..... . .. . .... .. ........ ................................................................................................ . ... . . ... . . . ... .. ... . . . .. . . .. ......... . . . . .. . ........ .............. . . .... .... ........... . . .. . ... . .............. .... .... ........ .. . . . . . . ................................... .. .. . .. . ................ . .......... .. . .. . . .. ..
lowQualScore : 0 77 7 7 99 44444444444444444444444 99 9 666666 7 7 9 7 0 1 22 7 777 44 8 0 00000 0 66 0 6666 88 88888888 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 666 7 7 999 7 7 7 333 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 99999999 11111111111111 0 5 0000 6666 00000000000 4 6 99 0 888 0 99999999999999 9999 4444 44444444 11 9 6 0 6 6 6 88888888888888888888888888888888888 00 00 6 00 6 0000000000000000 6 7777777777 55 4 55 4 0 99 99
consensus : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TGC-AT-G-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GGA-TTT-TC-AA----GAA-CT--ATTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--A-T--TA-TA-CATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
Reference ( family-4318 ) : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TGC-AT-G-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GGA-----TC-AA----GAA-CT--ATTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--A-T--TA-TA-CATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
gi|1 : ATCTCT-GAC-ATA---ATCGT--A-ACGTATGT---T-ACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGGAA-TTATAGT-GAAAT-CAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG--ATTATT-TAC---T-GG-TCCT-------------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------------TTTATA--G---GC-CTAT-----------AA-CT-----A----G-----GGAACTTTTC-AA----AAATCG--AATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C---------TT-----T---GT---ATGACCAAT---ATCATGTTG----TTTAC-TTA---TAC--TAAT-AA---TG-TGGTAACACTGAT--T--ATCG--CGTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCG--TT-----------ATA-TT-TAGCTCA--TGCATC-CCCA--CCTT-C--A-TAATG-TA-C-TCCA--AA-AGTTC-CG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A--GTA--CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCG--TTATGTATTAACAATA-AT-TAATTTA--TATATTACCCA--CCTT-T--A-TC-TA-TAATATCAA--AA-ATCTT-GGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT-----A---GC---GTG-GCAA----GT----TTGACATTCTTG-GTTTTGTAC--AAGT-AA---CA-CAGT--------G----AACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCA--T------------
gi|13 : cgATCTCT-GAC--CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAAGTCATGAGAAAATCA--TGC-AT-
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCT--T------------GTA-TC-GAATTCG--TGCATT-CCCA--TCTT-T--A-T--CA-TA-CACCTACTAA-GGTTC-AG-A--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTT-A--TTA--CGAAA
gi|15 : ctgTTTTGAC--CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GAAATTCATGAGGAAACAA--TGC-tt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCT-GACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GAAATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCC-TATTTTTTAAACAC---AT---GTG-C--ATGTAAT----TTG----TTTAA-ATACTATATAATAAT-AA---CC-TGG------------TCAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGT-AATTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTT-AC--CAGAA-T-GT--ACATGT-TAT---T-AATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGAAATTCATGAT-AAATCA--TGC-AT---TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAATATT-TAC---T-TGTTCCTAGCTTGTAGTTTA------TTT-TA--GCATGCTTTATACCAGCCTACCAA-CT-----GC--CA-----TGACTTT-TCAAA----GAT-CG--ATTGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTT-AATTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACA--TCTT-T--A-T---------AT--------AGCTT-GGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA-T--TTA--CGAAAgata
gi|22 : CGGCTAAT-C-GTTGG-AATCC----------------ATA-GT---ACTC--------T-CCTA--TCTT-T--AAC--TA-T--CAAC----AA-AGC-------------------CCACACGA--ACGACAACC-CGTACAAGCAAGGCA--TTA--CGAAA
gi|24 : TT-CCCA--CCTT-T--A-T--TA-TA-TATC----------------A----AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A--TTA--CGAAAat
gi|25 : ataTTAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGT-AATTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : --AGTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAAC-AAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GAAAT-CATGAGAAAACCA--TGC-AT-G-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG--A-TAT---AC---T-TG-TCCT-------------------TTT-TACCGCATGC-TTAT---------------------GCAACA-----GG---------------GAA-CT--ATTTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTC-T-TTTTTT-----C---GC---GTGACCAA----AT----TTG----TGTAAGGTACTGTAT--TAAT-AA---CC-TGAT--------T--TTAATCG--AGTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCG--TG-----------ATA-GTGTAACGCA--TATGTT-CCCATTTCTT-T--A-T--TA-TA-CATCCA--AA-AGCTT-GG-ATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATTTTA--CGAAA
gi|4 : C-AT-GATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAATACTGTAC---T--G-TCCTGCTACATGTAGCTGTAGTATTTATAACGCATGCCTTAT-----------AAGCTTATACGC--CATGCAGGGACGTT-TC-AA----AGG-TCGAATTTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT---------TTTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T----AATC---AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGTTT------------GTA-TT-TAACGCATGTATGTT-CCCA--TCTT-T--A-T--TA-TA----TCA--AA-AGCTTGGG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAAgat
gi|5 : CT-------------------TTA-TA--CC--GC-TTAT-----------AA-CT-----GC--AA-----GGAAT---TC-AAAGAGGAA-GT---TTTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTC-T-TTTTTT-----CTGGGCGTTGTG-CCAAT---AC----C------------ATACT------TAATAAA---CC-TGG---------A--TTGATCG--GTTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCG--T----------------GT-T-ATTCA--AACG----ACA-------C--A-T--TACTA-CAACTA--AATAATTG-GG-A--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-A--TTAAGCGAAA
gi|7 : tgTCTCT-GAC-AC-GAAAT-GT--ACACGTATA-------------C---------AT--ATTTACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATATTCATGAGAAAACCATGTGC-AT-G-TGCAGCACTGTCCT-TT-A-G-CT-GT-AGTTTAT----------TT-TACACATGTA-TGCC-------------------TTA-TA---CA-GC-TTAT-----------AA-CT-----GT--CA-----GG---------------GAA-CT--tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCAT-CTTTTA-----C---GTA--GTA-C--AT---AT----TTG------------------C--TAAT-AAAGCCC-TGGT--------TAATTAGTAA--A---AAAAAT--TCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCC--T------------ATG-AG-TA--TCA--TA-ATT-------TTTT-TAAA-T--TA--G-CATTCA--GG-AGTTttcaaagatcga
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC-----------TTGTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTCTAC--TAAT-AA---CCATGA-------------TAATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C------TTAA--ACCGAGT-ACTCAGTTAATC-ACTAAT-CAGTTGC-CATGCG--T-------------TGTTT-TAATGCA--TATGTT--CCA--TCTTGT--A-T--AA-TA-CAT-CA--AA-AGCTTGGG-A--TAAC--CGTCCCGCACGAGCACGACAAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 33333333333333333333333 111111 11111 2222 11111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222 111 111 222222222 33333333 22222222222222 1 1111 1111 11111111111 44444444444444 1111 11111111 44444444444444444444444444444444444 1111111111111111 2222222222
lowQualScore : 9 77 0 5 77 77777777777777777777777 77 7 222222 5 5 7 0 5 1 99 5 6 8 66 8 8 33333 5 66 6 8888 88 99999999 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 333 5 1 555 5 0 5 888 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 00000000 22222222222222 0 2 2222 0000 77777777777 1 7 66 5 888 5 88888888888888 6666 9999 11111111 66 2 3 1 3 3 3 33333333333333333333333333333333333 55 55 3 88 4444444444444444 3 2 1111111111 55 1 55 4 5 66 66
lowQualScore : . .. . . .. ....................... .. . ...... . . . . . . .. . . . .. . . ..... . .. . .... .. ........ ................................................................................................... . ... . . ... . . . ... .. ... . . . .. . . .. ......... . . . . .. . ........ .............. . . .... .... ........... . . .. . ... . .............. .... .... ........ .. . . . . . . ................................... .. .. . .. ................ . . .......... .. . .. . . .. ..
lowQualScore : 0 77 7 7 99 44444444444444444444444 99 9 666666 7 7 9 1 7 4 22 7 7 0 44 8 0 00000 0 66 0 6666 88 88888888 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 7 666 7 7 999 7 7 7 333 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 99999999 11111111111111 0 5 0000 6666 00000000000 4 6 99 0 888 0 99999999999999 9999 4444 44444444 11 9 6 0 6 6 6 88888888888888888888888888888888888 00 00 6 66 0000000000000000 6 6 7777777777 55 4 55 4 0 99 99
consensus : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--A--C-TTTC-AA----GAA-CN--ATTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
Reference ( family-4318 ) : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--A--T-TTTC-AA----GAA-CT--ATTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
gi|1 : ATCTCT-GAC-ATA---ATCGT--A-ACGTATGT---T-ACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGG-AATTATAGT-GAAA-TCAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG--ATTATT-TAC---T-GG-TCCT-------------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------------TTTATA--G---GC-CTAT-----------AA-CT-----A----G-----GG--AACT-TTTC-AA----AAATCG--AATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C---------TT-----T---GT---ATGACCAAT---ATCATGTTG----TTTAC-TTA---TAC--TAAT-AA---TG-TGGTAACACTGAT--T--ATCG--CGTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCG--TT-----------ATA-TT-TAGCTCA--TGCATC-CCCA--CCTT-C--ATAATG-T-AC-TCCA--AA-AGTTC-CG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A--GTA--CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCG--TTATGTATTAACAATA-AT-TAATTTA--TATATTACCCA--CCTT-T--ATC-TA-TAATATCAA--AA-ATCTT-GGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT-----A---GC---GTG-GCAA----GT----TTGACATTCTTG-GTTTTGTAC--AAGT-AA---CA-CAGT--------G----AACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCA--T------------
gi|13 : cgATCTCT-GAC--CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAAGTCATGAGAAAATCA--TG-CA-T
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCT--T------------GTA-TC-GAATTCG--TGCATT-CCCA--TCTT-T--AT--CA-T-ACACCTACTAA-GGTTC-AG-A--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTT-A--TTA--CGAAA
gi|15 : ctgTTTTGAC--CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GAAATTCATGAGGAAACAA--TG-Ctt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCT-GACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GAAATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCC-TATTTTTTAAACAC---AT---GTG-C--ATGTAAT----TTG----TTTAA-ATACTATATAATAAT-AA---CC-TGG------------TCAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGT-AATTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTT-AC--CAGAA-T-GT--ACATGT-TAT---T-AATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGAAATTCATGATAAA-TCA--TG-CA-T--TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAATATT-TAC---T-TGTTCCTAGCTTGTAGTTTA------TTT-TA--GCATGCTTTATACCAGCCTACCAA-CT-----GC--CA-----TG--AC-T-TTTCAAA----GAT-CG--ATTGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTT-AATTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACA--TCTT-T--AT---------AT--------AGCTT-GGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA-T--TTA--CGAAAgata
gi|22 : CGGCTAAT-C-GTTGG-AATCC----------------ATA-GT---ACTC--------T-CCTA--TCTT-TA-AC--TA-T--CAAC----AA-AG-------------------CCCACACGA--ACGACAACC-CGTACAAGCAAGGCA--TTA--CGAAA
gi|24 : TT-CCCA--CCTT-T--AT--TA-T-ATATC----------------A----AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A--TTA--CGAAAat
gi|25 : ataTTAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGT-AATTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : --AGTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAAC-AAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GAAAT-CATGAGAAAACCA--TG-CA-TG-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG--A-TAT---AC---T-TG-TCCT-------------------TTT-TACCGCATGC-TTAT---------------------GCAACA-----GG------------------GAA-CT--ATTTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTC-T-TTTTTT-----C---GC---GTGACCAA----AT----TTG----TGTAAGGTACTGTAT--TAAT-AA---CC-TGAT--------T--TTAATCG--AGTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCG--TG-----------ATA-GTGTAACGCA--TATGTT-CCCATTTCTT-T--AT--TA-T-ACATCCA--AA-AGCTT-GG-ATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATTTTA--CGAAA
gi|4 : -CA-TGATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAATACTGTAC---T--G-TCCTGCTACATGTAGCTGTAGTATTTATAACGCATGCCTTAT-----------AAGCTTATACGC--CATGCAGGG--A--CGTTTC-AA----AGG-TCGAATTTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT---------TTTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T----AATC---AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGTTT------------GTA-TT-TAACGCATGTATGTT-CCCA--TCTT-T--AT--TA-T-A---TCA--AA-AGCTTGGG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAAgat
gi|5 : CT-------------------TTA-TA--CC--GC-TTAT-----------AA-CT-----GC--AA-----GG--A--A-TT-C-AAAGAGGAA-GT---TTTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTC-T-TTTTTT-----CTGGGCGTTGTG-CCAAT---AC----C------------ATACT------TAATAAA---CC-TGG---------A--TTGATCG--GTTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCG--T----------------GT-T-ATTCA--AACG----ACA-------C--AT--TACT-ACAACTA--AATAATTG-GG-A--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-A--TTAAGCGAAA
gi|7 : tgTCTCT-GAC-AC-GAAAT-GT--ACACGTATA-------------C---------AT--ATTTACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATATTCATGAGAAAACCATGTG-CA-TG-TGCAGCACTGTCCT-TT-A-G-CT-GT-AGTTTAT----------TT-TACACATGTA-TGCC-------------------TTA-TA---CA-GC-TTAT-----------AA-CT-----GT--CA-----GGGAA--C-TTTC-AA----tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCAT-CTTTTA-----C---GTA--GTA-C--AT---AT----TTG------------------C--TAAT-AAAGCCC-TGGT--------TAATTAGTAA--A---AAAAAT--TCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCC--T------------ATG-AG-TA--TCA--TA-ATT-------TTTT-TAAAT--TA---GCATTCA--GG-AGTTagatcga
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC-----------TTGTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTCTAC--TAAT-AA---CCATGA-------------TAATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C------TTAA--ACCGAGT-ACTCAGTTAATC-ACTAAT-CAGTTGC-CATGCG--T-------------TGTTT-TAATGCA--TATGTT--CCA--TCTTGT--AT--AA-T-ACAT-CA--AA-AGCTTGGG-A--TAAC--CGTCCCGCACGAGCACGACAAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 33333333333333333333333 111111 11111 2222 11111111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 11 222 111 111 222222222 33333333 22222222222222 1 1111 1111 11111111111 44444444444444 1111 11111111 44444444444444444444444444444444444 1111111111111111 2222222222
lowQualScore : 9 77 0 5 77 77777777777777777777777 77 7 222222 5 5 7 0 5 1 99 5 6 8 66 8 8 33333 5 66 6 8888 88 99999999 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 22 1 55 5 333 5 1 555 5 0 5 888 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 00000000 22222222222222 0 2 2222 0000 77777777777 1 7 66 5 888 5 88888888888888 6666 9999 11111111 66 2 3 1 3 3 3 33333333333333333333333333333333333 55 55 3 55 3 4444444444444444 3 1111111111 55 1 55 4 5 66 66
lowQualScore : . .. . . .. ....................... .. . ...... . . . . . . .. . . . .. . . ..... . .. . .... .. ........ .................................................................................... . .. . .. . ... . . ... . . . ... .. ... . . . .. . . .. ......... . . . . .. . ........ .............. . . .... .... ........... . . .. . ... . .............. .... .... ........ .. . . . . . . ................................... .. .. . .. . ................ . .......... .. . .. . . .. ..
lowQualScore : 0 77 7 7 99 44444444444444444444444 99 9 666666 7 7 9 1 7 4 22 7 7 0 44 8 0 00000 0 66 0 6666 88 88888888 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 44 0 88 7 666 7 7 999 7 7 7 333 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 99999999 11111111111111 0 5 0000 6666 00000000000 4 6 99 0 888 0 99999999999999 9999 4444 44444444 11 9 6 0 6 6 6 88888888888888888888888888888888888 00 00 6 00 6 0000000000000000 6 7777777777 55 4 55 4 0 99 99
consensus : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTT-C--AA-GAN-CGA--TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--A-T--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
Reference ( family-4318 ) : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTT-C--AA-GAA-CNA--TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--A-T--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
gi|1 : ATCTCT-GAC-ATA---ATCGT--A-ACGTATGT---T-ACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGG-AATTATAGT-GAAA-TCAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG--ATTATT-TAC---T-GG-TCCT-------------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------------TTTATA--G---GC-CTAT-----------AA-CT----------A-----GGGAAC-TTTTC--AA-AAATCGA--ATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C---------TT-----T---GT---ATGACCAAT---ATCATGTTG----TTTAC-TTA---TAC--TAAT-AA---TG-TGGTAACACTGAT--T--ATCG--CGTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCG--TT-----------ATA-TT-TAGCTCA--TGCATC-CCCA--CCTT-C--A-TAATG-T-AC-TCCA--AA-AGTTC-CG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A--GTA--CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCG--TTATGTATTAACAATA-AT-TAATTTA--TATATTACCCA--CCTT-T--A-TC-TA-TAATATCAA--AA-ATCTT-GGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT-----A---GC---GTG-GCAA----GT----TTGACATTCTTG-GTTTTGTAC--AAGT-AA---CA-CAGT--------G----AACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCA--T------------
gi|13 : cgATCTCT-GAC--CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAAGTCATGAGAAAATCA--TG-CA-T
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCT--T------------GTA-TC-GAATTCG--TGCATT-CCCA--TCTT-T--A-T--CA-T-ACACCTACTAA-GGTTC-AG-A--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTT-A--TTA--CGAAA
gi|15 : ctgTTTTGAC--CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GAAATTCATGAGGAAACAA--TG-Ctt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCT-GACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GAAATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCC-TATTTTTTAAACAC---AT---GTG-C--ATGTAAT----TTG----TTTAA-ATACTATATAATAAT-AA---CC-TGG------------TCAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGT-AATTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTT-AC--CAGAA-T-GT--ACATGT-TAT---T-AATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGAAATTCATGATAAA-TCA--TG-CA-T--TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAATATT-TAC---T-TGTTCCTAGCTTGTAGTTTA------TTT-TA--GCATGCTTTATACCAGCCTACCAA-CT-----GC--CA-----TG--AC-TTT-TCAAA-GAT-CGA--TTGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTT-AATTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACA--TCTT-T--A-T---------AT--------AGCTT-GGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA-T--TTA--CGAAAgata
gi|22 : CGGCTAAT-C-GTTGG-AATCC----------------ATA-GT---ACTC--------T-CCTA--TCTT-T--AAC--TA-T--CAAC----AA-AGC-------------------CCACACGA--ACGACAACC-CGTACAAGCAAGGCA--TTA--CGAAA
gi|24 : TT-CCCA--CCTT-T--A-T--TA-T-ATATC----------------A----AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A--TTA--CGAAAat
gi|25 : ata--TTAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGT-AATTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : --AGTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAAC-AAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GAAAT-CATGAGAAAACCA--TG-CA-TG-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG--A-TAT---AC---T-TG-TCCT-------------------TTT-TACCGCATGC-TTAT---------------------GCAACA-----GG---------------GAA-CTA--TTTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTC-T-TTTTTT-----C---GC---GTGACCAA----AT----TTG----TGTAAGGTACTGTAT--TAAT-AA---CC-TGAT--------T--TTAATCG--AGTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCG--TG-----------ATA-GTGTAACGCA--TATGTT-CCCATTTCTT-T--A-T--TA-T-ACATCCA--AA-AGCTT-GG-ATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATTTTA--CGAAA
gi|4 : -CA-TGATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAATACTGTAC---T--G-TCCTGCTACATGTAGCTGTAGTATTTATAACGCATGCCTTAT-----------AAGCTTATACGC--CATGCAGGG--ACGTTT-C--AAAGGT-CGAA-TTTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT---------TTTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T----AATC---AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGTTT------------GTA-TT-TAACGCATGTATGTT-CCCA--TCTT-T--A-T--TA-T-A---TCA--AA-AGCTTGGG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAAgat
gi|5 : CT-------------------TTA-TA--CC--GC-TTAT-----------AA-CT-----GC--AA-----GG--AA-TTC-A--AA-GAG-GAAGTTTTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTC-T-TTTTTT-----CTGGGCGTTGTG-CCAAT---AC----C------------ATACT------TAATAAA---CC-TGG---------A--TTGATCG--GTTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCG--T----------------GT-T-ATTCA--AACG----ACA-------C--A-T--TACT-ACAACTA--AATAATTG-GG-A--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-A--TTAAGCGAAA
gi|7 : tgTCTCT-GAC-AC-GAAAT-GT--ACACGTATA-------------C---------AT--ATTTACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATATTCATGAGAAAACCATGTG-CA-TG-TGCAGCACTGTCCT-TT-A-G-CT-GT-AGTTTAT----------TT-TACACATGTA-TGCC-------------------TTA-TA---CA-GC-TTAT-----------AA-CT-----GT--CA-----GGGAAC-TTT-C--AA-tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCAT-CTTTTA-----C---GTA--GTA-C--AT---AT----TTG------------------C--TAAT-AAAGCCC-TGGT--------TAATTAGTAA--A---AAAAAT--TCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCC--T------------ATG-AG-TA--TCA--TA-ATT-------TTTT-TAAA-T--TA---GCATTCA--GG-AGTTagatcga
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC-----------TTGTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTCTAC--TAAT-AA---CCATGA-------------TAATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C------TTAA--ACCGAGT-ACTCAGTTAATC-ACTAAT-CAGTTGC-CATGCG--T-------------TGTTT-TAATGCA--TATGTT--CCA--TCTTGT--A-T--AA-T-ACAT-CA--AA-AGCTTGGG-A--TAAC--CGTCCCGCACGAGCACGACAAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 33333333333333333333333 111111 11111 2222 11111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 222 111 111 222222222 33333333 22222222222222 1 1111 1111 11111111111 44444444444444 1111 11111111 44444444444444444444444444444444444 1111111111111111 2222222222
lowQualScore : 9 77 0 5 77 77777777777777777777777 77 7 222222 5 5 7 0 5 1 99 5 6 8 66 8 8 33333 5 66 6 8888 88 99999999 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 1 555 5 333 5 1 555 5 0 5 888 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 00000000 22222222222222 0 2 2222 0000 77777777777 1 7 66 5 888 5 88888888888888 6666 9999 11111111 66 2 3 1 3 3 3 33333333333333333333333333333333333 55 55 3 55 3 4444444444444444 3 1111111111 55 1 55 4 5 66 66
lowQualScore : . .. . . .. ....................... .. . ...... . . . . . . .. . . . .. . . ..... . .. . .... .. ........ ................................................................................... . . ... . ... . . ... . . . ... .. ... . . . .. . . .. ......... . . . . .. . ........ .............. . . .... .... ........... . . .. . ... . .............. .... .... ........ .. . . . . . . ................................... .. .. . .. . ................ . .......... .. . .. . . .. ..
lowQualScore : 0 77 7 7 99 44444444444444444444444 99 9 666666 7 7 9 1 7 4 22 7 7 0 44 8 0 00000 0 66 0 6666 88 88888888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 0 777 7 666 7 7 999 7 7 7 333 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 99999999 11111111111111 0 5 0000 6666 00000000000 4 6 99 0 888 0 99999999999999 9999 4444 44444444 11 9 6 0 6 6 6 88888888888888888888888888888888888 00 00 6 00 6 0000000000000000 6 7777777777 55 4 55 4 0 99 99
consensus : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--A-T--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
Reference ( family-4318 ) : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GANCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--A-T--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
gi|1 : ATCTCT-GAC-ATA---ATCGT--A-ACGTATGT---T-ACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGG-AATTATAGT-GAAA-TCAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG--ATTATT-TAC---T-GG-TCCT-------------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------------TTTATA--G---GC-CTAT-----------AA-CT----------A-----GGGAAC-TTTTCAAA-AATCGA---ATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C---------TT-----T---GT---ATGACCAAT---ATCATGTTG----TTTAC-TTA---TAC--TAAT-AA---TG-TGGTAACACTGAT--T--ATCG--CGTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCG--TT-----------ATA-TT-TAGCTCA--TGCATC-CCCA--CCTT-C--A-TAATG-T-AC-TCCA--AA-AGTTC-CG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A--GTA--CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCG--TTATGTATTAACAATA-AT-TAATTTA--TATATTACCCA--CCTT-T--A-TC-TA-TAATATCAA--AA-ATCTT-GGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT-----A---GC---GTG-GCAA----GT----TTGACATTCTTG-GTTTTGTAC--AAGT-AA---CA-CAGT--------G----AACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCA--T------------
gi|13 : cgATCTCT-GAC--CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAAGTCATGAGAAAATCA--TG-CA-T
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCT--T------------GTA-TC-GAATTCG--TGCATT-CCCA--TCTT-T--A-T--CA-T-ACACCTACTAA-GGTTC-AG-A--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTT-A--TTA--CGAAA
gi|15 : ctgTTTTGAC--CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GAAATTCATGAGGAAACAA--TG-Ctt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCT-GACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GAAATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCC-TATTTTTTAAACAC---AT---GTG-C--ATGTAAT----TTG----TTTAA-ATACTATATAATAAT-AA---CC-TGG------------TCAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGT-AATTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTT-AC--CAGAA-T-GT--ACATGT-TAT---T-AATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGAAATTCATGATAAA-TCA--TG-CA-T--TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAATATT-TAC---T-TGTTCCTAGCTTGTAGTTTA------TTT-TA--GCATGCTTTATACCAGCCTACCAA-CT-----GC--CA-----TG--AC-TTTTCAAA-GATCGA---TTGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTT-AATTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACA--TCTT-T--A-T---------AT--------AGCTT-GGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA-T--TTA--CGAAAgata
gi|22 : CGGCTAAT-C-GTTGG-AATCC----------------ATA-GT---ACTC--------T-CCTA--TCTT-T--AAC--TA-T--CAAC----AA-AGC-------------------CCACACGA--ACGACAACC-CGTACAAGCAAGGCA--TTA--CGAAA
gi|24 : TT-CCCA--CCTT-T--A-T--TA-T-ATATC----------------A----AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A--TTA--CGAAAat
gi|25 : ata---TTAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGT-AATTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : --AGTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAAC-AAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GAAAT-CATGAGAAAACCA--TG-CA-TG-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG--A-TAT---AC---T-TG-TCCT-------------------TTT-TACCGCATGC-TTAT---------------------GCAACA-----GG--------------GAACTA---TTTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTC-T-TTTTTT-----C---GC---GTGACCAA----AT----TTG----TGTAAGGTACTGTAT--TAAT-AA---CC-TGAT--------T--TTAATCG--AGTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCG--TG-----------ATA-GTGTAACGCA--TATGTT-CCCATTTCTT-T--A-T--TA-T-ACATCCA--AA-AGCTT-GG-ATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATTTTA--CGAAA
gi|4 : -CA-TGATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAATACTGTAC---T--G-TCCTGCTACATGTAGCTGTAGTATTTATAACGCATGCCTTAT-----------AAGCTTATACGC--CATGCAGGG--ACGTTTC--AAAGGTCGAA--TTTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT---------TTTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T----AATC---AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGTTT------------GTA-TT-TAACGCATGTATGTT-CCCA--TCTT-T--A-T--TA-T-A---TCA--AA-AGCTTGGG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAAgat
gi|5 : CT-------------------TTA-TA--CC--GC-TTAT-----------AA-CT-----GC--AA-----GG--AA-TTCA--AA-GAG-GAAGTTTTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTC-T-TTTTTT-----CTGGGCGTTGTG-CCAAT---AC----C------------ATACT------TAATAAA---CC-TGG---------A--TTGATCG--GTTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCG--T----------------GT-T-ATTCA--AACG----ACA-------C--A-T--TACT-ACAACTA--AATAATTG-GG-A--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-A--TTAAGCGAAA
gi|7 : tgTCTCT-GAC-AC-GAAAT-GT--ACACGTATA-------------C---------AT--ATTTACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATATTCATGAGAAAACCATGTG-CA-TG-TGCAGCACTGTCCT-TT-A-G-CT-GT-AGTTTAT----------TT-TACACATGTA-TGCC-------------------TTA-TA---CA-GC-TTAT-----------AA-CT-----GT--CA-----GGGAAC-TTTCA-AA-GATCGA---tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCAT-CTTTTA-----C---GTA--GTA-C--AT---AT----TTG------------------C--TAAT-AAAGCCC-TGGT--------TAATTAGTAA--A---AAAAAT--TCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCC--T------------ATG-AG-TA--TCA--TA-ATT-------TTTT-TAAA-T--TA---GCATTCA--GG-AGTT
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC-----------TTGTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTCTAC--TAAT-AA---CCATGA-------------TAATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C------TTAA--ACCGAGT-ACTCAGTTAATC-ACTAAT-CAGTTGC-CATGCG--T-------------TGTTT-TAATGCA--TATGTT--CCA--TCTTGT--A-T--AA-T-ACAT-CA--AA-AGCTTGGG-A--TAAC--CGTCCCGCACGAGCACGACAAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 33333333333333333333333 111111 11111 2222 11111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 222 111 111 222222222 33333333 22222222222222 1 1111 1111 11111111111 44444444444444 1111 11111111 44444444444444444444444444444444444 1111111111111111 2222222222
lowQualScore : 9 77 0 5 77 77777777777777777777777 77 7 222222 5 5 7 0 5 1 99 5 6 8 66 8 8 33333 5 66 6 8888 88 99999999 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 555 5 333 5 1 555 5 0 5 888 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 00000000 22222222222222 0 2 2222 0000 77777777777 1 7 66 5 888 5 88888888888888 6666 9999 11111111 66 2 3 1 3 3 3 33333333333333333333333333333333333 55 55 3 88 4444444444444444 3 2 1111111111 55 1 55 4 5 66 66
lowQualScore : . .. . . .. ....................... .. . ...... . . . . . . .. . . . .. . . ..... . .. . .... .. ........ ................................................................................... . ... . ... . . ... . . . ... .. ... . . . .. . . .. ......... . . . . .. . ........ .............. . . .... .... ........... . . .. . ... . .............. .... .... ........ .. . . . . . . ................................... .. .. . .. ................ . . .......... .. . .. . . .. ..
lowQualScore : 0 77 7 7 99 44444444444444444444444 99 9 666666 7 7 9 1 7 4 22 7 7 0 44 8 0 00000 0 66 0 6666 88 88888888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 777 7 666 7 7 999 7 7 7 333 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 99999999 11111111111111 0 5 0000 6666 00000000000 4 6 99 0 888 0 99999999999999 9999 4444 44444444 11 9 6 0 6 6 6 88888888888888888888888888888888888 00 00 6 66 0000000000000000 6 6 7777777777 55 4 55 4 0 99 99
consensus : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
Reference ( family-4318 ) : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
gi|1 : ATCTCT-GAC-ATA---ATCGT--A-ACGTATGT---T-ACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGG-AATTATAGT-GAAA-TCAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG--ATTATT-TAC---T-GG-TCCT-------------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------------TTTATA--G---GC-CTAT-----------AA-CT----------A-----GGGAAC-TTTTCAAA-AATCGA---ATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C---------TT-----T---GT---ATGACCAAT---ATCATGTTG----TTTAC-TTA---TAC--TAAT-AA---TG-TGGTAACACTGAT--T--ATCG--CGTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCG--TT-----------ATA-TT-TAGCTCA--TGCATC-CCCA--CCTT-C--ATAATG-T-AC-TCCA--AA-AGTTC-CG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A--GTA--CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCG--TTATGTATTAACAATA-AT-TAATTTA--TATATTACCCA--CCTT-T--ATC-TA-TAATATCAA--AA-ATCTT-GGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT-----A---GC---GTG-GCAA----GT----TTGACATTCTTG-GTTTTGTAC--AAGT-AA---CA-CAGT--------G----AACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCA--T------------
gi|13 : cgATCTCT-GAC--CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAAGTCATGAGAAAATCA--TG-CA-T
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCT--T------------GTA-TC-GAATTCG--TGCATT-CCCA--TCTT-T--AT--CA-T-ACACCTACTAA-GGTTC-AG-A--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTT-A--TTA--CGAAA
gi|15 : ctgTTTTGAC--CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GAAATTCATGAGGAAACAA--TG-Ctt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCT-GACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GAAATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCC-TATTTTTTAAACAC---AT---GTG-C--ATGTAAT----TTG----TTTAA-ATACTATATAATAAT-AA---CC-TGG------------TCAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGT-AATTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTT-AC--CAGAA-T-GT--ACATGT-TAT---T-AATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGAAATTCATGATAAA-TCA--TG-CA-T--TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAATATT-TAC---T-TGTTCCTAGCTTGTAGTTTA------TTT-TA--GCATGCTTTATACCAGCCTACCAA-CT-----GC--CA-----TG--AC-TTTTCAAA-GATCGA---TTGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTT-AATTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACA--TCTT-T--AT---------AT--------AGCTT-GGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA-T--TTA--CGAAAgata
gi|22 : CGGCTAAT-C-GTTGG-AATCC----------------ATA-GT---ACTC--------T-CCTA--TCTT-TA-AC--TA-T--CAAC----AA-AG-------------------CCCACACGA--ACGACAACC-CGTACAAGCAAGGCA--TTA--CGAAA
gi|24 : TT-CCCA--CCTT-T--AT--TA-T-ATATC----------------A----AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A--TTA--CGAAAat
gi|25 : ata---TTAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGT-AATTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : --AGTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAAC-AAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GAAAT-CATGAGAAAACCA--TG-CA-TG-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG--A-TAT---AC---T-TG-TCCT-------------------TTT-TACCGCATGC-TTAT---------------------GCAACA-----GG--------------GAACTA---TTTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTC-T-TTTTTT-----C---GC---GTGACCAA----AT----TTG----TGTAAGGTACTGTAT--TAAT-AA---CC-TGAT--------T--TTAATCG--AGTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCG--TG-----------ATA-GTGTAACGCA--TATGTT-CCCATTTCTT-T--AT--TA-T-ACATCCA--AA-AGCTT-GG-ATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATTTTA--CGAAA
gi|4 : -CA-TGATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAATACTGTAC---T--G-TCCTGCTACATGTAGCTGTAGTATTTATAACGCATGCCTTAT-----------AAGCTTATACGC--CATGCAGGG--ACGTTTC--AAAGGTCGAA--TTTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT---------TTTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T----AATC---AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGTTT------------GTA-TT-TAACGCATGTATGTT-CCCA--TCTT-T--AT--TA-T-A---TCA--AA-AGCTTGGG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAAgat
gi|5 : CT-------------------TTA-TA--CC--GC-TTAT-----------AA-CT-----GC--AA-----GG--AA-TTCA--AA-GAG-GAAGTTTTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTC-T-TTTTTT-----CTGGGCGTTGTG-CCAAT---AC----C------------ATACT------TAATAAA---CC-TGG---------A--TTGATCG--GTTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCG--T----------------GT-T-ATTCA--AACG----ACA-------C--AT--TACT-ACAACTA--AATAATTG-GG-A--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-A--TTAAGCGAAA
gi|7 : tgTCTCT-GAC-AC-GAAAT-GT--ACACGTATA-------------C---------AT--ATTTACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATATTCATGAGAAAACCATGTG-CA-TG-TGCAGCACTGTCCT-TT-A-G-CT-GT-AGTTTAT----------TT-TACACATGTA-TGCC-------------------TTA-TA---CA-GC-TTAT-----------AA-CT-----GT--CA-----GGGAAC-TTTCA-AA-GATCGA---tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCAT-CTTTTA-----C---GTA--GTA-C--AT---AT----TTG------------------C--TAAT-AAAGCCC-TGGT--------TAATTAGTAA--A---AAAAAT--TCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCC--T------------ATG-AG-TA--TCA--TA-ATT-------TTTT-TAAAT--TA---GCATTCA--GG-AGTT
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC-----------TTGTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTCTAC--TAAT-AA---CCATGA-------------TAATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C------TTAA--ACCGAGT-ACTCAGTTAATC-ACTAAT-CAGTTGC-CATGCG--T-------------TGTTT-TAATGCA--TATGTT--CCA--TCTTGT--AT--AA-T-ACAT-CA--AA-AGCTTGGG-A--TAAC--CGTCCCGCACGAGCACGACAAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 33333333333333333333333 111111 11111 2222 11111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 222 111 111 222222222 33333333 22222222222222 1 1111 1111 11111111111 44444444444444 1111 11111111 44444444444444444444444444444444444 1111111111111111 2222222222
lowQualScore : 9 77 0 5 77 77777777777777777777777 77 7 222222 5 5 7 0 5 1 99 5 6 8 66 8 8 33333 5 66 6 8888 88 99999999 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 555 5 333 5 1 555 5 0 5 888 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 00000000 22222222222222 0 2 2222 0000 77777777777 1 7 66 5 888 5 88888888888888 6666 9999 11111111 66 2 3 1 3 3 3 33333333333333333333333333333333333 55 55 3 88 4444444444444444 3 2 1111111111 55 1 55 4 5 66 66
lowQualScore : . .. . . .. ....................... .. . ...... . . . . . . .. . . . .. . . ..... . .. . .... .. ........ ................................................................................... . ... . ... . . ... . . . ... .. ... . . . .. . . .. ......... . . . . .. . ........ .............. . . .... .... ........... . . .. . ... . .............. .... .... ........ .. . . . . . . ................................... .. .. . .. ................ . . .......... .. . .. . . .. ..
lowQualScore : 0 77 7 7 99 44444444444444444444444 99 9 666666 7 7 9 1 7 4 22 7 7 0 44 8 0 00000 0 66 0 6666 88 88888888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 777 7 666 7 7 999 7 7 7 333 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 99999999 11111111111111 0 5 0000 6666 00000000000 4 6 99 0 888 0 99999999999999 9999 4444 44444444 11 9 6 0 6 6 6 88888888888888888888888888888888888 00 00 6 66 0000000000000000 6 6 7777777777 55 4 55 4 0 99 99
consensus : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
Reference ( family-4318 ) : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
gi|1 : ATCTCT-GAC-ATA---ATCGT--A-ACGTATGT---T-ACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGG-AATTATAGT-GAAA-TCAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG--ATTATT-TAC---T-GG-TCCT-------------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------------TTTATA--G---GC-CTAT-----------AA-CT----------A-----GGGAAC-TTTTCAAA-AATCGA---ATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C---------TT-----T---GT---ATGACCAAT---ATCATGTTG----TTTAC-TTA---TAC--TAAT-AA---TG-TGGTAACACTGAT--T--ATCG--CGTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATAT-A-GTTGC-CATCCG--TT-----------ATA-TT-TAGCTCA--TGCATC-CCCA--CCTT-C--ATAATG-T-AC-TCCA--AA-AGTTC-CG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A--GTA--CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAA-C-GTTGTACATCCG--TTATGTATTAACAATA-AT-TAATTTA--TATATTACCCA--CCTT-T--ATC-TA-TAATATCAA--AA-ATCTT-GGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT-----A---GC---GTG-GCAA----GT----TTGACATTCTTG-GTTTTGTAC--AAGT-AA---CA-CAGT--------G----AACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAAT-C-GTTGC-CATCCA--T------------
gi|13 : cgATCTCT-GAC--CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAAGTCATGAGAAAATCA--TG-CA-T
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAAT-T-GTTGT-CATCCT--T------------GTA-TC-GAATTCG--TGCATT-CCCA--TCTT-T--AT--CA-T-ACACCTACTAA-GGTTC-AG-A--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTT-A--TTA--CGAAA
gi|15 : ctgTTTTGAC--CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GAAATTCATGAGGAAACAA--TG-Ctt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCT-GACCATATAAAT-GT--ACACGTATGT---T-ACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GAAATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCC-TATTTTTTAAACAC---AT---GTG-C--ATGTAAT----TTG----TTTAA-ATACTATATAATAAT-AA---CC-TGG------------TCAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGT-AATTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTT-AC--CAGAA-T-GT--ACATGT-TAT---T-AATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGAAATTCATGATAAA-TCA--TG-CA-T--TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAATATT-TAC---T-TGTTCCTAGCTTGTAGTTTA------TTT-TA--GCATGCTTTATACCAGCCTACCAA-CT-----GC--CA-----TG--AC-TTTTCAAA-GATCGA---TTGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTT-AATTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATC------------------------------------GTT-CACA--TCTT-T--AT---------AT--------AGCTT-GGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA-T--TTA--CGAAAgata
gi|22 : CGGCTAAT-C-GTTGG-AATCC----------------ATA-GT---ACTC--------T-CCTA--TCTT-TA-AC--TA-T--CAAC----AA-AG-------------------CCCACACGA--ACGACAACC-CGTACAAGCAAGGCA--TTA--CGAAA
gi|24 : TT-CCCA--CCTT-T--AT--TA-T-ATATC----------------A----AC--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A--TTA--CGAAAat
gi|25 : ata---TTAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGT-AATTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : --AGTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAAC-AAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GAAAT-CATGAGAAAACCA--TG-CA-TG-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG--A-TAT---AC---T-TG-TCCT-------------------TTT-TACCGCATGC-TTAT---------------------GCAACA-----GG--------------GAACTA---TTTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTC-T-TTTTTT-----C---GC---GTGACCAA----AT----TTG----TGTAAGGTACTGTAT--TAAT-AA---CC-TGAT--------T--TTAATCG--AGTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAAT-C-GTTGT-CATCCG--TG-----------ATA-GTGTAACGCA--TATGTT-CCCATTTCTT-T--AT--TA-T-ACATCCA--AA-AGCTT-GG-ATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATTTTA--CGAAA
gi|4 : -CA-TGATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAATACTGTAC---T--G-TCCTGCTACATGTAGCTGTAGTATTTATAACGCATGCCTTAT-----------AAGCTTATACGC--CATGCAGGG--ACGTTTC--AAAGGTCGAA--TTTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT---------TTTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T----AATC---AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAAT-C-ATTGC-CATCCGTTT------------GTA-TT-TAACGCATGTATGTT-CCCA--TCTT-T--AT--TA-T-A---TCA--AA-AGCTTGGG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAAgat
gi|5 : CT-------------------TTA-TA--CC--GC-TTAT-----------AA-CT-----GC--AA-----GG--AA-TTCA--AA-GAG-GAAGTTTTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTC-T-TTTTTT-----CTGGGCGTTGTG-CCAAT---AC----C------------ATACT------TAATAAA---CC-TGG---------A--TTGATCG--GTTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCC-GTTGT-TA-CCG--T----------------GT-T-ATTCA--AACG----ACA-------C--AT--TACT-ACAACTA--AATAATTG-GG-A--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-A--TTAAGCGAAA
gi|7 : tgTCTCT-GAC-AC-GAAAT-GT--ACACGTATA-------------C---------AT--ATTTACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATATTCATGAGAAAACCATGTG-CA-TG-TGCAGCACTGTCCT-TT-A-G-CT-GT-AGTTTAT----------TT-TACACATGTA-TGCC-------------------TTA-TA---CA-GC-TTAT-----------AA-CT-----GT--CA-----GGGAAC-TTTCA-AA-GATCGA---tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCAT-CTTTTA-----C---GTA--GTA-C--AT---AT----TTG------------------C--TAAT-AAAGCCC-TGGT--------TAATTAGTAA--A---AAAAAT--TCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAAT-T-GTTGT-CATTCC--T------------ATG-AG-TA--TCA--TA-ATT-------TTTT-TAAAT--TA---GCATTCA--GG-AGTT
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC-----------TTGTTT-----C---GT---GTG-CCAAT---AT----TTG----TTTAA-GTACTCTAC--TAAT-AA---CCATGA-------------TAATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C------TTAA--ACCGAGT-ACTCAGTTAATC-ACTAAT-CAGTTGC-CATGCG--T-------------TGTTT-TAATGCA--TATGTT--CCA--TCTTGT--AT--AA-T-ACAT-CA--AA-AGCTTGGG-A--TAAC--CGTCCCGCACGAGCACGACAAC
blockSeqs : T CA . TC TATATTAATTGTCCATTTGTCC . G AATAAA . G C T G TG . . A AA T . CAA C CA T TAAA TG ACATGTA GCTACATGTAGCTGTAGTATTTATAACGCATGCCTTATAAGCTTATACGCCATGCAGGGACGTTTC A AGT C ACC . G AT T A AAA GA TCT T T . TT G T TA TATATATAC T T T TA TCCCCTA CTGGGCGTT A C TGTA . ACATTCTTGG T G AA A AGC A TTAATT GTGA CCGG CAACAA GC C C A C A A GTTATGTATTAACAATAATTAATTTATAT AC TT G AA CTATAATATCAA T C TGGATTT CG G GC A C TT AG
blockSeqs : T A . . CATATTAATTGTAC . G T . . C . T . . . . AA T . CAA C GA A GTAA T TTGT AGCTTGTAGTTTATTTTAGCATGCTTTATACCAGCCTACCAACTGCCATGACTTTTCA . A . C . A TC . . AA . T C . . TT . A G C . T T TA CCCAT AAACACAT . C T . TGTAAGG C A . . . . TTTT AG . ATT . C . G . . . GTTTGTATTTAACGCATGTAT C . . A CATACACCTACT . T TGGGATA . A . . . . .
blockSeqs : T A . . TTACTTGTCA . G T . . C . T . . . . AC G . CA A AC A A T TTG TTATACAGCTTATAACTGTCAGGGAACTTTCA . . . . . G T . . AA . T T . . AT . C G C . T T TA CTCT CGTA . C T . TTTAAA C G . . . . ATT AG . T . T . G . . . GTGATAGTGTAACGCATAT C . . . TACTACAACTA . C TGGTAT . T . . . . .
blockSeqs : . . . . TTTAATTGTC . G T . . C . T . . . . A . . AG . T A . . TG TTATACCGCTTATAACTGCAAGGAATTCA . . . . . A T . . AA . . T . . A . G G C . . . AA CTCT AGC . C T . TTTAAG C G . . . . TG AG . C . C . A . . . TTGTATCGAATTCGTGC C . . . TATACATCCA . C TGGGAT . A . . . . .
blockSeqs : . . . . TTAATTGG . T T . . A . T . . . TTTTACCGCATGCTTATGCAACAGG . . . . . G G . . AA . . T . . G G T . . . TA . CGC . C T . TTTAAG C C . . . . TC GT . C . G . A . . . GTTGTTTTAATGCATAT C . . . TAGCATTCA . C TGGGAT . A . . . . .
blockSeqs : . . . . C . . T . . . . T . . . . . G T . . AA . . . . . . CGT . . . . A C . . . . . TT T . C . G . A . . . CTATGAGTATCATA C . . . AATACATCA . T CAGAT . G . . . . .
blockSeqs : CGT . . . . . . . . . . . T G . C . C . A . . . GTGTTATTCAAAC C . . . TATATATC . T GGGAT . G . . . . .
blockSeqs : A . C . . . G . . . ATAGTACTC . . . . TATCAAC . C A . G . .
blockSeqs : . A . . . . . . . . TATATCA . . . . . .
blockSeqs : . . . . . . . . . AT . .
blockSeqCons : A* TATATTAATTGTC********** ** AA AA** TTG***** *** AA* T** G* C******** TA CCCT**** **** TT************ GTTGTATCTAATNCATAC***************** TATACATCA******* TGGGAT****
originalCons : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATAT---TTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAAATTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGT--------T--TTAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCG--T------------ATA-NT-TAACTCA--TACGTT-CCCA--TCTT-T--AT--TA-T-ACATCCA--AA-AGCTC-GG-A--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
finalCons : ATCTCTTGACA-CAGAAAT-GT--ACACGTATATATATTAATTGTC----------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TG-CA-TG-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGGAA--TATT-TACTTG-----TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAA-TTG--CATGGCAGTTTAAT--TTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGTG-TAC--------AT-ACCTTTTGAATATTACCCCCCCCCCCCCTCCCT----TTTTTT-----C---GC---GTG-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAAT-AA---CC-TGGTT------------AATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAAT-C-GTTGT-CATCCGTTGTATCTAATNCATAC-----------------GTT-CCCA--TCTT-T--ATTATACATCA-------AA-AGCTTGGGAT----AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 111 3333333333333333 111111 111 11111 2222 11111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 222 111 222222222 33333333 111111111 11111 1111 1111 11111111111 111 22222222222 1111 11111111 4444444444444444444444444444444 111
lowQualScore : 9 77 0 5 77 888 1 5555555555555555 7 222222 5 5 7 5 5 0 99 5 444 66 8 8 33333 5 66 6 8888 88 99999999 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 555 5 333 5 1 555 5 0 5 5 77 666 3 5 6 55 8 1 77 555555555 6 7 7 0 33 0 00000000 666666666 5 00000 2 2222 0000 77777777777 1 7 66 333 5 77777777777 6666 9999 11111111 66 2 3 1 7 3 55 2222222222222222222222222222222 4 55 4 4 99 000 4 888888888888888 4 55 1 55 4 5 66 66
lowQualScore : . .. . . .. ... . ................ . ...... . . . . . . .. . ... .. . . ..... . .. . .... .. ........ ................................................................................... . ... . ... . . ... . . . . .. ... . . . .. . . .. ......... . . . . .. . ........ ......... . ..... . .... .... ........... . . .. ... . ........... .... .... ........ .. . . . . . .. ............................... . .. . . .. ... . ............... . .. . .. . . .. ..
lowQualScore : 0 77 7 7 99 000 3 3333333333333333 9 666666 7 7 9 7 0 1 22 7 777 44 8 0 00000 0 66 0 6666 88 88888888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 777 7 666 7 7 999 7 7 7 7 99 333 6 7 7 22 0 0 77 222222222 7 2 3 1 11 2 99999999 444444444 0 88888 5 0000 6666 00000000000 4 6 99 888 0 11111111111 5555 4444 44444444 11 9 6 0 3 6 66 5555555555555555555555555555555 0 55 0 0 55 444 0 555555555555555 0 55 4 55 4 0 99 99
consensus : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATATATATTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TGC-AT-G-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAA-TTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC-GT---G-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAATAA---CC-TGG--T--------TAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAATC-GTTGT-CATCCG-T-T--GTA-TC---------TAATTCA--TACGTT-CCCA--TCTT-TA-T--TATA-CAT-CAA--AAG-CTTGGGA--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
Reference ( family-4318 ) : ATCTCTTGAC-ACAGAAAT-GT--ACACGTATATATATTAATTGT-C---------TT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAATTCATGAGAAAACCA--TGC-AT-G-TGCAGCAATNTCTT-AT-C-A-CTCGNAAGATTATCAGG--AATATT-TAC---T-TG-TCCT-------------------TTT-TA--GCATGC-TTAT-----------AA-CT-----GC--CA-----GG--AC-TTTC--AA-GATCGA---TTTA-C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-TCGTAA-TTG--CATGGCAGTTTAA--TTTTG-AAGAGCATCA-ACTTTTTTATAC-ATCGT-GTA--------CAT-ACCTTTTGAATATTACCCCCCCCCCCCCT--CCC-T-TTTTTT-----C---GC-GT---G-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAATAA---CC-TGG--T--------TAATCG--AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCGGTTAGTCGGCTAATC-GTTGT-CATCCG-T-T--GTA-TC---------TAATNCA--TACGTT-CCCA--TCTT-TA-T--TATA-CAT-CAA--AAG-CTTGGGA--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAA
gi|1 : ATCTCT-GAC-ATA---ATCGT--A-ACGTATGT----TACTTGT-C---------CTTAATTTACCATA-ATTATAA--A---GGCTA-T-ATTGGAA-TTATAGT-GAAAT-CAGTAGAAAATC---TGCCATTG-TGCAGC-ATGTCTTAATAC-A-CTCGCAAAATT-TCAGG--ATTATT-TAC---T-GG-TCCT-------------------
gi|1 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaCT-------------------TTTATA--G---GC-CTAT-----------AA-CT----------A-----GGGAAC-TTTTCAAA-AATCGA---ATTA-CCT-TACAACTGTAGCAAGG-ATTG-T-A-ATCA-T--------G--CATGGCAGTTTAA--TTTGA-AAGACCATCACACTGTTTCTTAC-CTCGT--CA---------AT-ACCGTTT-AAT-TT-----CCCCCCCCCT--C---------TT-----T---GT-AT---GACCAAT---ATCATGTTG----TTTAC-TTA---TAC--TAATAA---TG-TGG--TAACACTGATTATCG--CGTAAAAAATTTTC-AGTCGacctgacggtgtagttattttatttttttttttaaaccccccccatgggggcttttataggcctataactagggaacttttcaaaaatcgaattaccttacaactgtagcaaggattgtaatcatgcatggcagtttaatttgaaagaccatcacactgtttcttacctcgtcaataccgtttaatttccccccccctctttgtatgaccaatatcatgttgtttacttatactaataatgtggtaacactgattatcgcgtaaaaaattttcagtcg
gi|10 : ggaggaatgttgcaaacattcaccgatacaatcaagcgctgacattagatttggttagtaactttgaaaaagttattgtattaataaatacaaaaaaaattaaagttcgtaatcttacgagttcttcctaattttatagtaaacaactaatatcacaattggcatgttgaaaagtaatgattaactttaggtaatgtacgtatgaacatcaatttttaagggaaaaaattattaatatcttagttgcagtgatgaacacattcattctttccatctaagtatttcttgggtgaaactgttgggaagtcacttcaggaaacatatcaatggttagtaaggaggagtcataaatattagagtctcgaatctccatgattcttaggcgtctttttcctattataacgatcccctcctattttcattctctgactttagttgaggtaatctctgacataatcgtaacgtatgttacttgtccttaatttaccataattataaaggctatattggaattatagtgaaatcagtagaaaatctgccattgtgcagcatgtcttaatacactcgcaaaatttcaggattatttactggtcctacctgacggtgtagttattttatttttttttttaaaccccccccatgggggCGGTTA----G-A--T-----TTTAA---CCGAGC-ACTGGGT-AGCCGTCATATA-GTTGC-CATCCG-T-T--ATA-TT---------TAGCTCA--TGCATC-CCCA--CCTT-CA-TAATGTA-CTC-CAA--AAG-TTCCG----T-AC--CGTTCGACACGA--ACGACAACT-TGTATAAGCAAGA-A--GTA--CGGAA
gi|11 : -----TTTAA--AC-GAGTCAATCAGTTAGTCGG--AAAC-GTTGTACATCCG-T-TATGTA-TTAACAATAATTAATTTA--TATATTACCCA--CCTT-TA-TC-TATAATAT-CAA--AAATCTTGGTA--T-AC--CGTACCGC-CGA--ACGACAACTACGTATAAG
gi|12 : TTTAT-----A---GC-GT---G-GCAA----GT----TTGACATTCTTG-GTTTTGTAC--AAGTAA---CA-CAG--T--------GAACCG---TTTACAAATTGTCTAACCAGTTACCGGGTA--CAACAATTTTA--ACCGAGT-TCTAGGTTAGCATGTCAATC-GTTGC-CATCCA-T-
gi|13 : cgATCTCT-GAC--CAGAAAT-GT--ACATGTACATATATTAATTGT-CCATTTGTCCTT--ATTTACCAAAGATCATAA--T---GG-TA-TCATTGGAAATCATATT-GAAAGTCATGAGAAAATCA--TGC-AT-
gi|14 : tctctaactttgtgtgacgtgtGT-ACTCGGTTAGCCTGCTAATT-GTTGT-CATCC--T-T--GTA-TC---------GAATTCG--TGCATT-CCCA--TCTT-TA-T--CATA-CAC-CTACTAAG-GTTCAGA--T-GC--TGTCCCACATGG--ATGACAACT-CGT-TAGACATTT-A--TTA--CGAAA
gi|15 : ctgTTTTGAC--CAGAAAT-GTTCATATGTATACATATTAATTGTAC---------TT--ATTTACTAAAGATCATAA--T---AG-TA-T-ATTGGAAATCATATT-GAAATTCATGAGGAAACAA--TGC-tt
gi|16 : ttctctgattttgtgtgacgtgaatATCTCT-GACCATATAAAT-GT--ACACGTATGT----TACTTGT-CA--------TT--ATTTACCAAA-ATCATAAAATAAAGG-TA-TCATAGGGAATTATATT-GAAATTCATGAGAAAATC
gi|17 : tgaattttgtgacgtgtATAT--CCCCCCTCCCCTCTTCCCC-TATTTTTTAAACAC---AT-GT---G-C--ATGTAAT----TTG----TTTAA-ATACTATATAATAATAA---CC-TGG--T--------CAATCG---GTTACAAA-TGCCAAGCCAGTTG----ACA--T-----TTT
gi|18 : -C---TACA-CTGTAACAAGGGATTA-T-A-ATCA-ATGTAA-TTG--TATGGCTGTTTAA---TTTG-AAGAGCATCA-AC-TTTTTATTC-ATCTT-GTA--------CAT-ACC-TCTGCATATTACCCCCCCCCCCC
gi|2 : tacATCTCTT-AC--CAGAA-T-GT--ACATGT-----TATTAATTGG-----------TT--ATT-ACCAAAGAT-ATAA--T---GG-TGGCCGTTTGAAATCATATTTGAAATTCATGAT-AAATCA--TGC-AT---TGCAGCAAT-TCTT-AT-CAA-CTCGCAAGATATTCAGGTAAATATT-TAC---T-TGTTCCTAGCTTGTAGTTTA------TTT-TA--GCATGCTTTATACCAGCCTACCAA-CT-----GC--CA-----TG--AC-TTTTCAAA-GATCGA---TTGACC---TGCA-T--TAATAAAAAAATA-T-A-ATCA-TCTTAA-TTGGACATGGTAGTGTAATCTTTCG-AAGAGCACCA-ACTTT
gi|20 : ggagggtgcagcatacatgtaagcaacagctgtgcattagatttggtttgaactcttgaaatatattttacatttgatatatacacaaaagaattaaagttccgtacgtcttacgattcttccattgaaaagtgaattactttaaataatacgacgtctaacatataaaaaaaaaattatgctaatagtgaggtttcagtgatgaaaacatttctatcccattctaagtatgtagaagtcatccgggaaacatgatggttatcatgaagataatgatttagcctgattccataatttagcgtattacatccccctctcattttcattctctgacttgtgagactatT-ACTCAGTTAGTCGGCTAATC-GTTGT-CATC-----------------------------------GTT-CACA--TCTT-TA-T--------AT-------AG-CTTGGGA--T-AC--CGTCCCTCACGA--AAGACAACT-CGTATAAGAAAGA-T--TTA--CGAAAgata
gi|22 : CGGCTAATC-GTTGG-AATCCA-T-A--GTA--C---------T------------CT-CCTA--TCTT-TAAC--TAT--CAA-CAA--AG--------------------CCCACACGA--ACGACAACC-CGTACAAGCAAGGCA--TTA--CGAAA
gi|24 : TT-CCCA--CCTT-TA-T--TATA-TAT-CAA------------------C--CGTCCCACACGA--ACAACAACT-CGTATAAGCAGGA-A--TTA--CGAAAat
gi|25 : ata---TTAA-C---TTCA-CTGTAACAAGGGATTA-G-ATAT---TCGTAA-TTG--TATGACAG-TTAA---TTTG-AAGAGCAa
gi|26 : --AGTTACAAATTATCTTGCCAATTA----GCA--C-----TTTAA--ACCGAGT-ACTCAATTAGTCGGC
gi|3 : ATTTCTTAAC-AAAGAAAT-GT--ACATGTATAT---TTAATTGT-C---------TT---TTTATCAAAGATCATAA--T---GG-TA-TCATTGGAAATTATATT-GAAAT-CATGAGAAAACCA--TGC-AT-G-TGCAGCAATTTCTT-AT-C-A-CTCGGAAGATTATCAGG--A-TAT---AC---T-TG-TCCT-------------------TTT-TACCGCATGC-TTAT---------------------GCAACA-----GG--------------GAACTA---TTTA-C---TACA-CTGTAACAAGGAATTA-T-A-ATCA-TCGTAAATTG--TATCGCAGTTTAA--TTTTG-AAGAGAATCA-ACTTTTTTATAC-ATCAT-GTA--------CAT-ACCTTTTGAACATTACCCCCCCCCCCCCT--CTC-T-TTTTTT-----C---GC-GT---GACCAA----AT----TTG----TGTAAGGTACTGTAT--TAATAA---CC-TGATTT--------TAATCG--AGTTAAAAATTATCTAGCCGGTTA----GCA--C-----TTTAAGCACTGAGT-ACTCAGTTAGTCGGCTAATC-GTTGT-CATCCG-T-G--ATAGTG---------TAACGCA--TATGTT-CCCATTTCTT-TA-T--TATA-CATCCAA--AAG-CTT-GGATTT-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-ATTTTA--CGAAA
gi|4 : C-AT-GATGCAGCA-TTTCTT-AT-C-AACTAGACAAATTATCAGGGTAATACTGTAC---T--G-TCCTGCTACATGTAGCTGTAGTATTTATAACGCATGCCTTAT-----------AAGCTTATACGC--CATGCAGGG--ACGTTTC--AAAGGTCGAA--TTTA-CC--TGCA-CTGTAACAAGGGATTAAT-A-------CGTAA-TTG--CATGGCAGTTTAA--TTT-G-ACGAGTATCA-ACTTTTA-ATAC-ATCCT-GTATATATATACAT-ACCTTT-GAATATTACCCCCCCCCCCTCT---------TTTTT-----C---GT-GT---G-CCAAT---AT----TTG----TTTAA-GTACTGTAC--TAATAA---CC-TGG--T--------TAATC---AGTTACAAATTGTCTAGCCGGTTA----GCA--C-----TTTAA--ACCGAGT-ACTCAGTTATTCGGCTAATC-ATTGC-CATCCGTT-T--GTA-TT---------TAACGCATGTATGTT-CCCA--TCTT-TA-T--TAT---AT-CAA--AAG-CTTGGGA--T-AC--CGTCCCGCACGA--ACGACAACT-CGTATAAGCAAGA-A--TTA--CGAAAgat
gi|5 : CT-------------------TTA-TA--CC--GC-TTAT-----------AA-CT-----GC--AA-----GG--AA-TTCA--AA-GAG-GAAGTTTTA-CACCTACT-GTGTAACAAGGGATTA-TCA-ATCAATCGTAA-TTG--CATGGCAGTTTA----TTTGTAAAAGCAG-A-ACTGTTATATACGATCGTTATA--------CAT-AC--TTTGAATATAACCCTTCCCTCCCTT--CTC-T-TTTTTT-----CTGGGC-GTTGTG-CCAAT---AC----C------------ATACT------TAATAAA--CC-TGGA-T--------TGATCG--GTTTACAAATTGT-TAGCAGGTTA----GCA--C-----TTTAA--ACGCAGT-A------TAGTAGGCTAATCCGTTGT-TA-CCG-T----GT-------------TA-TTCA--AACGA--CACA--T----TA-C--TACA--AC-TAA--ATA-ATTGGGA--T-ACCGCGTCC----TGA--ACGACAA-T-CGTATAAG--AAA-A--TTAAGCGAAA
gi|7 : tgTCTCT-GAC-AC-GAAAT-GT--ACACGTATACATATT------------------------TACCAAATATCATAA--T---GG-AA-TAATGGGAAATTATATT-GATATTCATGAGAAAACCATGTGC-AT-G-TGCAGCACTGTCCT-TT-A-G-CT-GT-AGTTTAT----------TT-TACACATGTA-TGCC-------------------TTA-TA---CA-GC-TTAT-----------AA-CT-----GT--CA-----GGGAAC-TTTCA-AA-GATCGA---tctc
gi|8 : aaatgttgggaagtcactcaggaaaaatatggtcatcatgaagataaatggtttatagtctgatctccatgatttaggcgtatatacccccctctccttattttcatCCCCCCCCCCCCCA--CCCAT-CTTTTA-----C---GTAGT---A-C--AT---AT----TTG------------------C--TAATAAAGCCC-TGG--T--------TAATT---AGTAAAAAAAATTCTAATCAGTTT----GCAATT-----TTTGG--ACGGAGT-AATTGGTTAACTGATTAATT-GTTGT-CATTCC-TATGAGTA-TCA--------TAAT
gi|9 : taattacattgtatgtatgcatgattgaatctaaatgggaggtatttttaaaacatcatctacatgtagaccttcccagttgaatcatgtccaaccatcccctctcgcctcccTCGT-GTA--------TATTACCTGT-GAA-ATTACCCCCCCCCTC-----------TTGTTT-----C---GT-GT---G-CCAAT---AT----TTG----TTTAA-GTACTCTAC--TAATAA---CCATGA-----------TAATCGGTGATGACAAATTGTCTATCCGGCTA----GCG--C------TTAA--ACCGAGT-ACTCAGTTAATC-ACTAATCAGTTGC-CATGCG-T-T--GT--TT---------TAATGCA--TATGTT--CCA--TCTTGTA-T--AATA-CAT-CAA--AAG-CTTGGGA--TAAC--CGTCCCGCACGAGCACGACAACttttttaaattagcattcaggagtt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GGAGGGTGTGCAACATATAACACAGCTGACAACTGATTTGGTTTGAACTTTGAACGTATATTTTTATTGTATATAATAAATTCAAAAGAATTAAAGTTCGTACATGGTGTCATCTTACTAGTTCTTCCATTTTATATAAACTAATTGAAAATTACTACTTTAGATAACTGTACGTCTGAACATATCAGAGAAAATATGCTAATTTTTATTTCAGTTGATGAAACATTTCATTTCTTTCCCATCTAAGTATTTTTGGAGTGAAATGTTGGGAAGTCACCCGGGAAACATATAGTTATCATGAAGATAAATGATTTAGCCTGATCCCTCCTCATTTTCATTCT
Unaligned ( gi|19 ): TGAACATATAAGGGGAAAAAATGCTTATATTTAGTTCAGTTGATGAAACATTTCCTTTCTTTCCCATCGAACCATTTCCAGGGGTGAAATGTTGGGAAGTCAC
Unaligned ( gi|21 ): ATTTTAATTGTATATAATAAATACAAAGGAATTAAAGTTCGTACGTCCTACGAGTTCTTCCATTTGAAAAAGTAATACTTTAGATGACTGTACGTT
Unaligned ( gi|23 ): ACAACTGTGCAGAGATTTGTTTGAGCCCTATATGTATTTTAGATTATATGCTGTTTATATGCACAAAAGAATTTAAATATCCCCGT