lowQualScore : 1 111111 22 22222 33333333333333 11111111111 333333333333 1 44444444444444444444444444 1 2
lowQualScore : 5 8 111111 6 22 33333 4 00000000000000 99999999999 555555555555 1 11111111111111111111111111 77 5 5 5 0
lowQualScore : . . ...... . .. ..... . .............. ........... ............ . .......................... .. . . . .
lowQualScore : 4 6 555555 0 66 44444 4 11111111111111 99999999999 555555555555 6 77777777777777777777777777 99 0 0 0 2
consensus : TTTTCGTGGATTTA------TATATTTGTAAGAAAG-ATAACTC-TGGAATGT-TT--G-CT-TTT--NTCTTTATTC-G-T------GGAGG--N-TGT-----AAATTCGTG------G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAA-TTCTAATGATTCC
Reference ( gi|3 ) : TTTTCATCGATTTA------TACATTTGTAAGAAAT-ATAACTC-AGGCATGT-TT--A-CT-TTT--TCCTTTATTT-G-T------GAAGG--T-TGA-----AAATTTTTG------G---GT--G-GCTACCACCAAATTCC--ACGAAAATTGA-GCCAACACGAA-TTCAAATGATTCC
gi|5 : TTTTTGTGGATTTA------TATATCGGTAAGAAG--ATAACT
gi|6 : catggggacataaTTTCTGTGGATTTC------TATATTTGTAAGAAAG-ACAACTA-TGAAATGT-----------------CTTTATTC-A-C------TGAGG--A-TGT-----AAATTCGTG------G---GT--G-ggttgagatgtaaatttgtggtgagggagaccatgaattccacgaaaattgagcaccacagattctaatgattc
gi|2 : gcattgctgaatatttttaagggttcgtggttacgtaTTTCGTGGATTCA------TATATTTGTAACAAG--ATAACTT-GGTGATGT-TT--G-TT-TTT--ATCTTTATTTCT-T------GAATA--TAT-------AAATTCGTG------G---GT--GTGTTG-TAC------CC--ACAAAAATTGA-GCCACCACAAA-TTCTAATGATTCC
gi|4 : tggagacgtaaTTTCAT-GATT-A------TATATTTGTAAGAAAG-ATAACTC-TGGAATG--TT--G-CT-TCTTGTTCTTTATTC-G-T------GAAGG--A-TGT-----AAAT
gi|12 : tagattgcctgaattttgtttgggttcatggggacgtaTTTCTTGGATTTA------TATATTTGTAAGAAAG-ATAACTC-TGGcgtggatgaggggt
gi|10 : gtggattgctgagttttttgggggaTTTTGTGGATTTA------TATATTTATAAGAATG-ATAACTC-TGGAATGT-TT--G-Caacatt
gi|14 : gtggattgctgaattttttcgggtttcattcatggggacgtacTCTCGTGGATTTA------CATATTTGTAAGAATG-ATAACTC-TGGAATGT-T
gi|1 : cGATTTAATAAATTATATTTGTAAGAAG--ATAACTC-TGGAGCGT-TTTGA-TT-TTT--GTCTT--TTT-G-T------TGAGG--A-TGT-----AA--TTGTG------G---GTTAG-GGTAC--CCAAGTTCCAAACGAAAATTCATGCCACCATGAA-T
gi|11 : gatttctgattttttgcgggttgtggggatgtaaATTTA------CATATTTTTAAGAAAG-ATAACTT-TTGAATGT-TT--G-TT-TTT--GTCTTTATTC-ATT------GAAGA----TGT-----CAATTTGTG------G---GT--G-
gi|19 : tttacatattTTA------TATATTTGTAAGAAAG-ATAACTC-TGGAATGa
gi|7 : ATTTGTAAGAAAGAATAACTC-TGAAATGTATT--G-CC-TTG--TGTTTTA-TT-G-T------TGAGGAAT-CGG-----TAACTTGCGTGGCGAG---GG--G-GTTACCACAAAA
gi|8 : T-ATAGCTCTCGAAATAT-TT--GGCTATTT--TGTTTTATTC-G-TTTTAAAGAATG--T-T-A-----AAATTCTTG------AAAAG---G-AATACCA--GAATTCC--ACGAAAATAGT-GCCACCACGAA-TTacttcgatgctatcaagaat
gi|5 : GG--T-TGAGATGTAAATTTGTG------GTGAG---G-GAGACCAT-GAATTCC--ACGAAAATTGA-G-CACCACAGA-TTCTAATGATTCgc
gi|15 : catggggacataatttttgtggatttatatatcggtaagaagataactCGAATTCC--ACGAAAATTTA-GCCACCACAAA-TTCTAATGACTTC
gi|18 : CGAATTCC--ACGAAAATTGA-GCCACCACGTA-TT---ATGA
gi|16 : AATTCC--ACGAAAATTGA-GCCACCATAAATTTC---TGATTCa
gi|9 : ccatgGAAAATTGA-ATCACCACAAA-TTCCAATGATTCC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTGTAAGAAAGATAAGTCTAAATGTCTTTATTTGTTGACGATGTAAATTCAAGGGT
Unaligned ( gi|17 ): CTGTCTTTATTCACCGAGGATATAAATTCGTGGGTGAGGGG
Alignments
lowQualScore : 111111 333333333333333 1111 111 1111111111
lowQualScore : 000000 5 2 2 5555 2 77 000000000000000 0 1 5555 44 44 44 3 7777 111 555 3333333333 66 4 33
lowQualScore : ...... . . . .... . .. ............... . . .... .. .. .. . .... ... ... .......... .. . ..
lowQualScore : 555555 2 7 7 7777 7 88 777777777777777 4 6 9999 33 66 66 3 1111 777 888 8888888888 11 4 99
consensus : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-G----G-AATGT-TT--G-CT--TT-T--GTCTTTATTCGT---TGAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
Reference ( family-4291 ) : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-G----G-AATGT-TT--G-CT--TT-T--NTCTTTATTCGT---GGAGG-NT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
gi|1 : GATTTAATAAATTATATTTGTAAGAA-GA-TAACTCT-G----G-AGCGT-TTTGA-TT--TT-T--GTCTT--TTTGT---TGAGG-AT--GT--AA--T-TGTG----G---GTTAG-GGTAC--CCAAGTTCCAAACGAAAATTCATGCCACCATGAAT
gi|10 : gatttctgattttttgcgggttgtggggatgtaaTTTTGTGGATTTA------TATATTTATAAGAATGA-TAACTCT-G----G-AATGT-TT--G-C
gi|11 : gtggattgctgaattttttcgggtttcattcatggggacgtacATTTA------CATATTTTTAAGAAAGA-TAACTTT-T----G-AATGT-TT--G-TT--TT-T--GTCTTTATTCAT---TGAAG-AT--GT--CAATT-TGTG----G---GT--G-
gi|12 : tttacatattTTTCTTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-G----G-AACAT-Ta
gi|13 : gtggattgctgagttttttgggggaTTGTAAGAAAGA-TAAGTCT------A-AATG-------------------TCTTTATTTGT---TGACG-AT--GT--AAATT-CAAG----G---GT--
gi|14 : TCTCGTGGATTTA------CATATTTGTAAGAATGA-TAACTCT-G----G-AATGT-T
gi|15 : cCGAATTCC--ACGAAAATTTA-GCCACCACAAATTCTAATGACTTC
gi|16 : GAATTCC--ACGAAAATTGA-GCCACCATAAATTTC--TGATTC
gi|17 : ccat-T--GTCTTTATTCAC---CGAGG-AT--AT--AAATT-CGTG----G---GT--G-
gi|18 : cCGAATTCC--ACGAAAATTGA-GCCACCACGTATT---ATGAagggg
gi|19 : TTA------TATATTTGTAAGAAAGA-TAACTCT-G----G-AATGa
gi|2 : TTTCGTGGATTCA------TATATTTGTAACAA-GA-TAACT-T-G----GTGATGT-TT--G-TT--TT-T--ATCTTTATTTCT---TGAAT-AT--AT--AAATT-CGTG----G---GT--GTGTTG-TAC------CC--ACAAAAATTGA-GCCACCACAAATTCTAATGATTCC
gi|3 : tggagacgtaaTTTTCATCGATTTA------TACATTTGTAAGAAATA-TAACTCA-G----G-CATGT-TT--A-CT--TT-T--TCCTTTATTTGT---GAAGG-TT--GA--AAATT-TTTG----G---GT--G-GCTACCACCAAATTCC--ACGAAAATTGA-GCCAACACGAATTCAAATGATTCC
gi|4 : TTTCATGA--TTA------TATATTTGTAAGAAAGA-TAACTCT-G----G-AATG--TT--G-CT--TC-TTGTTCTTTATTCGT---GAAGG-AT--GT--AAA-T-CGTG----G---AT--G-
gi|5 : tagattgcctgaattttgtttgggttcatggggacgtaTTTTTGTGGATTTA------TATATCGGTAAGAA-GA-TAAC--T-G----G-------TT--G-----------------------------AG-AT--GT--AAATT-TGTG----GTGAG---G-GAGACCAT-GAATTCC--ACGAAAATTGA-G-CACCACAGATTCTAATGATTCaggggt
gi|6 : catggggacataaTTTCTGTGGATTTC------TATATTTGTAAGAAAGA-CAACTAT-G----A-AATG-------------------TCTTTATTCAC---TGAGG-AT--GT--AAATT-CGTG----G---GT--G-
gi|7 : gcattgctgaatatttttaagggttcgtggttacgtaATTTGTAAGAAAGAATAACTCT-G----A-AATGTATT--G-CC--TTGT--GT-TTTATT-GT---TGAGGAATCGGT--AACTTGCGTGGCGAG---GG--G-GTTACCAC
gi|8 : A-TAGCTCTCG----A-AATAT-TT--GGCTATTT-T--GT-TTTATTCGTTTTAAAGA-AT--GTTAAAATT-CTTG----AAAAG---G-AATACCA--GAATTCC--ACGAAAATAGT-GCCACCACGAATTaaaaacttcgatgctatcaagaat
gi|9 : tTGTA-GAAAGA-TAACTTT-GCAACA-AATAG-TT--G------------TCTTTTCTCGT---TGATG-AT--GT--AATTT-C-TG----G---GT--G----------------------AAAATTGA-ATCACCACAAATTCCAATGATTCCgc
Alignments
lowQualScore : 111111 2222222222222222222 111111111111111111
lowQualScore : 000000 5 2 2 2 2222222222222222222 3 0 1 555 3 44 44 3 7777 333333333333333333 66 4 33
lowQualScore : ...... . . . . ................... . . . ... . .. .. . .... .................. .. . ..
lowQualScore : 555555 2 7 7 7 6666666666666666666 3 4 6 888 3 66 66 3 1111 555555555555555555 11 4 99
consensus : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-GT-TT--G-CT--T-T-TG-TCTTTATTCGTT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
Reference ( family-4291 ) : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-GT-TT--G-CT--T-T-TG-TCTTTATTCGTT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
gi|1 : GATTTAATAAATTATATTTGTAAGAA-GA-TAACTCT-GG-AGC-GT-TTTGA-TT--T-T-TG-TCTT--TTTGTT---GAGG-AT--GT--AA--T-TGTG----G---GTTAG-GGTAC--CCAAGTTCCAAACGAAAATTCATGCCACCATGAAT
gi|10 : gatttctgattttttgcgggttgtggggatgtaaTTTTGTGGATTTA------TATATTTATAAGAATGA-TAACTCT-GG-AAT-GT-TT--G-C
gi|11 : gtggattgctgaattttttcgggtttcattcatggggacgtacATTTA------CATATTTTTAAGAAAGA-TAACTTT-TG-AAT-GT-TT--G-TT--T-T-TG-TCTTTATTCATT---GAAG-AT--GT--CAATT-TGTG----G---GT--G-
gi|12 : tttacatattTTTCTTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAC-AT-Ta
gi|13 : gtggattgctgagttttttgggggaTTGTAAGAAAGA-TAAGTCT-AA-A--------------------TG-TCTTTATTTGTT---GACG-AT--GT--AAATT-CAAG----G---GT--
gi|14 : TCTCGTGGATTTA------CATATTTGTAAGAATGA-TAACTCT-GG-AAT-GT-T
gi|15 : cCGAATTCC--ACGAAAATTTA-GCCACCACAAATTCTAATGACTTC
gi|16 : GAATTCC--ACGAAAATTGA-GCCACCATAAATTTC--TGATTC
gi|17 : ccat-TG-TCTTTATTCACC---GAGG-AT--AT--AAATT-CGTG----G---GT--G-
gi|18 : cCGAATTCC--ACGAAAATTGA-GCCACCACGTATT---ATGAagggg
gi|19 : TTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-Ga
gi|2 : TTTCGTGGATTCA------TATATTTGTAACAA-GA-TAACT-T-GGTGAT-GT-TT--G-TT--T-T-TA-TCTTTATTTCTT---GAAT-AT--AT--AAATT-CGTG----G---GT--GTGTTG-TAC------CC--ACAAAAATTGA-GCCACCACAAATTCTAATGATTCC
gi|3 : tggagacgtaaTTTTCATCGATTTA------TACATTTGTAAGAAATA-TAACTCA-GG-CAT-GT-TT--A-CT--T-T-TT-CCTTTATTTGTG---AAGG-TT--GA--AAATT-TTTG----G---GT--G-GCTACCACCAAATTCC--ACGAAAATTGA-GCCAACACGAATTCAAATGATTCC
gi|4 : TTTCATGA--TTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-G--TT--G-CT--TCT-TGTTCTTTATTCGTG---AAGG-AT--GT--AAA-T-CGTG----G---AT--G-
gi|5 : tagattgcctgaattttgtttgggttcatggggacgtaTTTTTGTGGATTTA------TATATCGGTAAGAA-GA-TAA--CT-GG-----------------------------------TT---GAG--AT--GT--AAATT-TGTG----GTGAG---G-GAGACCAT-GAATTCC--ACGAAAATTGA-G-CACCACAGATTCTAATGATTCaggggt
gi|6 : catggggacataaTTTCTGTGGATTTC------TATATTTGTAAGAAAGA-CAACTAT-GA-AA-------------------TG-TCTTTATTCACT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-
gi|7 : gcattgctgaatatttttaagggttcgtggttacgtaATTTGTAAGAAAGAATAACTCT-GA-AAT-GTATT--G-CC--T-TGTG-T-TTTATT-GTT---GAGGAATCGGT--AACTTGCGTGGCGAG---GG--G-GTTACCAC
gi|8 : A-TAGCTCTCGA-AAT-AT-TT--GGCTATT-T-TG-T-TTTATTCGTTTTAAAGA-AT--GTTAAAATT-CTTG----AAAAG---G-AATACCA--GAATTCC--ACGAAAATAGT-GCCACCACGAATTaaaaacttcgatgctatcaagaat
gi|9 : tTGTA-GAAAGA-TAACTTT-GC-AACAAA-TA--G-------T-TG-TCTTTTCTCGTT---GATG-AT--GT--AATTT-C-TG----G---GT------------------------GAAAATTGA-ATCACCACAAATTCCAATGATTCCgc
Alignments
lowQualScore : 111111 2222222222222222222 111111111111111111
lowQualScore : 000000 5 2 2 2 2222222222222222222 3 0 1 555 3 44 44 3 7777 333333333333333333 66 4 33
lowQualScore : ...... . . . . ................... . . . ... . .. .. . .... .................. .. . ..
lowQualScore : 555555 2 7 7 7 6666666666666666666 3 4 6 888 3 66 66 3 1111 555555555555555555 11 4 99
consensus : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-GT-TT--G-CT--T-T-TG-TCTTTATTCGTT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
Reference ( family-4291 ) : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-GT-TT--G-CT--T-T-TG-TCTTTATTCGTT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
gi|1 : GATTTAATAAATTATATTTGTAAGAA-GA-TAACTCT-GG-AGC-GT-TTTGA-TT--T-T-TG-TCTT--TTTGTT---GAGG-AT--GT--AA--T-TGTG----G---GTTAG-GGTAC--CCAAGTTCCAAACGAAAATTCATGCCACCATGAAT
gi|10 : gatttctgattttttgcgggttgtggggatgtaaTTTTGTGGATTTA------TATATTTATAAGAATGA-TAACTCT-GG-AAT-GT-TT--G-C
gi|11 : gtggattgctgaattttttcgggtttcattcatggggacgtacATTTA------CATATTTTTAAGAAAGA-TAACTTT-TG-AAT-GT-TT--G-TT--T-T-TG-TCTTTATTCATT---GAAG-AT--GT--CAATT-TGTG----G---GT--G-
gi|12 : tttacatattTTTCTTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAC-AT-Ta
gi|13 : gtggattgctgagttttttgggggaTTGTAAGAAAGA-TAAGTCT-AA-A--------------------TG-TCTTTATTTGTT---GACG-AT--GT--AAATT-CAAG----G---GT--
gi|14 : TCTCGTGGATTTA------CATATTTGTAAGAATGA-TAACTCT-GG-AAT-GT-T
gi|15 : cCGAATTCC--ACGAAAATTTA-GCCACCACAAATTCTAATGACTTC
gi|16 : GAATTCC--ACGAAAATTGA-GCCACCATAAATTTC--TGATTC
gi|17 : ccat-TG-TCTTTATTCACC---GAGG-AT--AT--AAATT-CGTG----G---GT--G-
gi|18 : cCGAATTCC--ACGAAAATTGA-GCCACCACGTATT---ATGAagggg
gi|19 : TTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-Ga
gi|2 : TTTCGTGGATTCA------TATATTTGTAACAA-GA-TAACT-T-GGTGAT-GT-TT--G-TT--T-T-TA-TCTTTATTTCTT---GAAT-AT--AT--AAATT-CGTG----G---GT--GTGTTG-TAC------CC--ACAAAAATTGA-GCCACCACAAATTCTAATGATTCC
gi|3 : tggagacgtaaTTTTCATCGATTTA------TACATTTGTAAGAAATA-TAACTCA-GG-CAT-GT-TT--A-CT--T-T-TT-CCTTTATTTGTG---AAGG-TT--GA--AAATT-TTTG----G---GT--G-GCTACCACCAAATTCC--ACGAAAATTGA-GCCAACACGAATTCAAATGATTCC
gi|4 : TTTCATGA--TTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-G--TT--G-CT--TCT-TGTTCTTTATTCGTG---AAGG-AT--GT--AAA-T-CGTG----G---AT--G-
gi|5 : tagattgcctgaattttgtttgggttcatggggacgtaTTTTTGTGGATTTA------TATATCGGTAAGAA-GA-TAA--CT-GG-----------------------------------TT---GAG--AT--GT--AAATT-TGTG----GTGAG---G-GAGACCAT-GAATTCC--ACGAAAATTGA-G-CACCACAGATTCTAATGATTCaggggt
gi|6 : catggggacataaTTTCTGTGGATTTC------TATATTTGTAAGAAAGA-CAACTAT-GA-AA-------------------TG-TCTTTATTCACT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-
gi|7 : gcattgctgaatatttttaagggttcgtggttacgtaATTTGTAAGAAAGAATAACTCT-GA-AAT-GTATT--G-CC--T-TGTG-T-TTTATT-GTT---GAGGAATCGGT--AACTTGCGTGGCGAG---GG--G-GTTACCAC
gi|8 : A-TAGCTCTCGA-AAT-AT-TT--GGCTATT-T-TG-T-TTTATTCGTTTTAAAGA-AT--GTTAAAATT-CTTG----AAAAG---G-AATACCA--GAATTCC--ACGAAAATAGT-GCCACCACGAATTaaaaacttcgatgctatcaagaat
gi|9 : tTGTA-GAAAGA-TAACTTT-GC-AACAAA-TA--G-------T-TG-TCTTTTCTCGTT---GATG-AT--GT--AATTT-C-TG----G---GT------------------------GAAAATTGA-ATCACCACAAATTCCAATGATTCCgc
blockSeqs : . T A C T TATTTGGCTATTT T C TTA A CG TA G GCGA TGAGGGAGACCAT . . TA
blockSeqs : . A . . . TGTATTGCCTTG . T . . . . . . GTGGCTACCACC . . AA
blockSeqs : . A . . . TGTTTGTTTT . C . . . . . . AAAGGAATACCA . . TA
blockSeqs : . A . . . TGTTTGTTTT . T . . . . . . GTGTGTTGTAC . . CA
blockSeqs : . T . . . TGTTTACTTT . T . . . . . . GT . . C
blockSeqs : . A . . . TGTTGCTTCT . C . . . . . . . . .
blockSeqs : . A . . . CAAATAGT . C . . . . . . . .
blockSeqs : . A . . . . . C . . . . . . . .
blockSeqs : . A . . . . . C . . . . . .
blockSeqs : . A . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : ****** TGTTTGTTTT********* **
originalCons : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-GT-TT--G-CT--T-T-TG-TCTTTATTCGTT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
finalCons : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AATGTTTGTTTT---------TG-TCTTTATTCGTT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
Alignments
lowQualScore : 111111 222222222222 111111111111111111
lowQualScore : 000000 5 2 2 2 33 2 222222222222 3 0 1 555 3 44 44 3 7777 333333333333333333 66 4 33
lowQualScore : ...... . . . . .. . ............ . . . ... . .. .. . .... .................. .. . ..
lowQualScore : 555555 2 7 7 7 11 9 888888888888 3 4 6 888 3 66 66 3 1111 555555555555555555 11 4 99
consensus : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-GT-TT--G--T-TTT-TG-TCTTTATTCGTT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
Reference ( family-4291 ) : TTTTCGTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-GT-TT--G--T-TTT-TG-TCTTTATTCGTT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-GNTACCACCGAATTCC--ACGAAAATTGA-GCCACCACGAATTCTAATGATTCC
gi|1 : GATTTAATAAATTATATTTGTAAGAA-GA-TAACTCT-GG-AGC-GT-TTTGA--T-TTT-TG-TCTT--TTTGTT---GAGG-AT--GT--AA--T-TGTG----G---GTTAG-GGTAC--CCAAGTTCCAAACGAAAATTCATGCCACCATGAAT
gi|10 : gatttctgattttttgcgggttgtggggatgtaaTTTTGTGGATTTA------TATATTTATAAGAATGA-TAACTCT-GG-AAT-GT-TT--G--
gi|11 : gtggattgctgaattttttcgggtttcattcatggggacgtacATTTA------CATATTTTTAAGAAAGA-TAACTTT-TG-AAT-GT-TT--G--T-TTT-TG-TCTTTATTCATT---GAAG-AT--GT--CAATT-TGTG----G---GT--G-c
gi|12 : tttacatattTTTCTTGGATTTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAC-AT-Ta
gi|13 : gtggattgctgagttttttgggggaTTGTAAGAAAGA-TAAGTCT-AA-A-------------------TG-TCTTTATTTGTT---GACG-AT--GT--AAATT-CAAG----G---GT--
gi|14 : TCTCGTGGATTTA------CATATTTGTAAGAATGA-TAACTCT-GG-AAT-GT-T
gi|15 : cCGAATTCC--ACGAAAATTTA-GCCACCACAAATTCTAATGACTTC
gi|16 : GAATTCC--ACGAAAATTGA-GCCACCATAAATTTC--TGATTC
gi|17 : ccat-TG-TCTTTATTCACC---GAGG-AT--AT--AAATT-CGTG----G---GT--G-
gi|18 : cCGAATTCC--ACGAAAATTGA-GCCACCACGTATT---ATGAagggg
gi|19 : TTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-Ga
gi|2 : TTTCGTGGATTCA------TATATTTGTAACAA-GA-TAACT-T-GGTGAT-GT-TT--G--T-TTT-TA-TCTTTATTTCTT---GAAT-AT--AT--AAATT-CGTG----G---GT--GTGTTG-TAC------CC--ACAAAAATTGA-GCCACCACAAATTCTAATGATTCC
gi|3 : tggagacgtaaTTTTCATCGATTTA------TACATTTGTAAGAAATA-TAACTCA-GG-CAT-GT-TT--A--C-TTT-TT-CCTTTATTTGTG---AAGG-TT--GA--AAATT-TTTG----G---GT--G-GCTACCACCAAATTCC--ACGAAAATTGA-GCCAACACGAATTCAAATGATTCC
gi|4 : TTTCATGA--TTA------TATATTTGTAAGAAAGA-TAACTCT-GG-AAT-GT-TG--C--T-TCT-TGTTCTTTATTCGTG---AAGG-AT--GT--AAA-T-CGTG----G---AT--G-
gi|5 : tagattgcctgaattttgtttgggttcatggggacgtaTTTTTGTGGATTTA------TATATCGGTAAGAA-GA-TAA--CT-GG----------------------------------TT---GAG--AT--GT--AAATT-TGTG----GTGAG---G-GAGACCAT-GAATTCC--ACGAAAATTGA-G-CACCACAGATTCTAATGATTCaggggt
gi|6 : catggggacataaTTTCTGTGGATTTC------TATATTTGTAAGAAAGA-CAACTAT-GA-AA------------------TG-TCTTTATTCACT---GAGG-AT--GT--AAATT-CGTG----G---GT--G-
gi|7 : gcattgctgaatatttttaagggttcgtggttacgtaATTTGTAAGAAAGAATAACTCT-GA-AAT-GTATT--G--C-CTTGTG-T-TTTATT-GTT---GAGGAATCGGT--AACTTGCGTGGCGAG---GG--G-GTTACCAC
gi|8 : A-TAGCTCTCGA-AAT-AT-TT--GGCTATTT-TG-T-TTTATTCGTTTTAAAGA-AT--GTTAAAATT-CTTG----AAAAG---G-AATACCA--GAATTCC--ACGAAAATAGT-GCCACCACGAATTaaaaacttcgatgctatcaagaat
gi|9 : tTGTA-GAAAGA-TAACTTT-GC-AACAAA-TA--G------T-TG-TCTTTTCTCGTT---GATG-AT--GT--AATTT-C-TG----G---GT------------------------GAAAATTGA-ATCACCACAAATTCCAATGATTCCgc