lowQualScore : 2 2222 1111 111 1 11 11 11 222 1 33 1 11 111 1 1 33333 1 11 11 22222 22222222222 11 333333333333333 11 33333333333 1111111111111111 222222222 444444444444444444444444444 22222 22 11111111 111 2222222222 111111 11 1111 1 111 111 6666666666666666666 1 2 2 222222 2
lowQualScore : 8 0 2222 4444 6 6 99 6 4 9 99 6 99 555 6 0 3 6 3 2 6 999 6 6 33 6 11 88 7 0 333 0 3 33 3 44 555 7 3 4 3 44444 2 6 33 0 77 22 33333 33333333333 4 55 4 55 555 4 7 4 9 0 4 0 4 777 00 777 2 222222222222222 4 666 00 1 66 4 4 33333333333 2 777 55 66 5555555555555555 4 2 666 555555555 777777777777777777777777777 22222 00 8888 777 22222222 111 9999999999 999 0 666666 11 6 1111 3 0 777 7 777 8888888888888888888 5 0 0 999999 0
lowQualScore : . . .... .... . . .. . . . .. . .. ... . . . . . . . ... . . .. . .. .. . . ... . . .. . .. ... . . . . ..... . . .. . .. .. ..... ........... . .. . .. ... . . . . . . . . ... .. ... . ............... . ... .. . .. . . ........... . ... .. .. ................ . . ... ......... ........................... ..... .. .... ... ........ ... .......... ... . ...... .. . .... . . ... . ... ................... . . . ...... .
lowQualScore : 0 2 7777 2222 7 7 22 7 0 3 22 7 22 000 7 8 7 7 0 2 7 333 7 7 88 7 00 33 3 7 333 7 3 77 3 00 777 3 3 7 3 77777 0 7 88 2 22 22 22222 99999999999 0 55 0 55 111 4 1 4 9 6 4 3 4 888 66 888 9 999999999999999 4 111 66 9 77 4 4 77777777777 0 888 11 11 3333333333333333 4 9 111 222222222 333333333333333333333333333 44444 88 2222 888 77777777 777 8888888888 222 8 000000 00 8 8888 2 0 555 3 777 5555555555555555555 5 0 0 555555 0
consensus : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A-GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TNAAACTCTTGTACTTTATNC-AGCT-AAGTT-TACTCT-GCATGATAT-TTAATA--AA--TAATAAT---ATTGAA-TTTC--TTTTGGGACGT-TTT-ATGGC-GATATCTAAAA-TATNCG-TAC--AT-ACCGCCATTGCTAAA--TACCCCGACAC-AGTAAGC---CNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GNCAC-AGTGAG-CTTGTA-CT---TGCTTTTCTCG---TCCCC--NACTNC-------G-AAT-TTG--GAGTANNTAG-CG-TAG-G---CCT--TCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTC------NT-AGCTCCTGN--G---GTTT----C-TG--N-----GTCAAAGA-ATGGATNGCATCGTTTCCTGTT--TAGC-AAGAGAT---AAAA---AATATT--TGTCGGTGNA-TGGAA---A--AAA--ATGAGAT-GT-ACATCCATTG-GT---ACATCAAGAGCGTTT-A-TAAAAAAAATGCTAATCACTTAAACCCTCTCCGTTGCTTTGAATATTCTTTGACACATACATGTATTATTT
Reference ( gi|2 ) : TGATCAAATTATGAGTTT-TGTGTTGACGTTTA-GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTCT-GCATAATAT-TTAATA--AA--TAATAGT---ATTGGA-TTTCC-TTTTGGGATGT-TTT-GTGAC-GATATCTAAAA-TATTTG-TACGCATCACCGCCATTGCTCAA--TACCCTGATAT-AGTAAAC---TAGTATTAAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GTCAC-ATTAAG-CTTATA-TT---TGCTTGTCTCG---TCCCC--CACTGT-------G-AAT-TTG--GAGTACTTAG-CG-TAA-G---CCC--TTTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CCA-CTC------TT-AGCTCCTGG--G---GTTT----C-TG--A-----GTTAAGTG-GTGGATACCATCGTTTCCTGTT--TAGC-AAGAGAT---AAAA---AATCTT--TGTTGGTGAA-TGGAA---A--AAA--ATAAGAT-GT-ACATCCATTG-GT---ACATCAAGAGCGTTT-A-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTC
gi|3 : TGATCAAATTATGAGTTT-TGTGT-GACGTT----GAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-AGCT-A-GTT-AACTCT-GCATA-TAT-TTAATA--AA--TAATAGT---ATTGGA-TTTC--TTTTGGGATGT-TTTTGTGAC-GATA-CTAAAA-TATTTGATACGCAT-ACCGC-ATTGCTCAA--TACCCTGATAT-AGTAAAC---TAGTATTA-C-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCCCGTCAC-ATTAAG-CTTATA-TT---TGCTTGTCTCG---TCCCC---ACTGT-------G-AAT-TTG--G-TTACTTAG-CG-TAATG---C----TTTC---GCCA-TCAA--AGCT---C--AG--GAGA--TTCCA-CTC------TT-AGCTCCTGG--G----TTT----C-TG--A-----GTTA-GTG--TGGATACCATCGTTCTC-GTT--TAGC-AAGAGAT---AAAA---AATCTT--TGTTGGTGAA-TGG-A---A--AAA--ATAAGAT-GTAACATCCATTG-GT---ACATCAAGAGCGTTTAA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
gi|4 : tTGATCAAATTATGAGTTT-TGTGTTGACGTTTA-GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTCT-GCATAATAT-TTAATA--
gi|5 : attgggaaaaactacaatatacaactgaattaaaaacgtggcaaaattactaaaacaaagattttgcatgtactataaaattgcaaaatgaatgaaataaaattgagatactgatatttcgttttatacattggaattgtaaatcatgtttttatgcagaattatcaaagatgaatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatttacaataatccttttagcaaaacttgaaggctaaaggaagatgaatgcccccccccccctcccgcacacacacattatgcaacatgaaaataacacacactattTGATCAAATTATGAGTTT-TGTGT-GACGTT----GAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-AGCT--AGTT-AACTCT-GCAT-ATAT-TTAAT
gi|6 : aaatacgaattgggaaaaactacaatatacaactgattaaaaacgtggcaaaatttactaaaacaaagattttgcatgtatctataaaattgcaaaatgaatgaaataaaattgagatactgtatatttcgttttatacttggattgtaaatcatgtttttaatgcgattatcaaaagtgatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatgttaaataatcgttttagcaatactgaagtctaaaggaagatgaatgcccccccccctccgcacacacacattaatgcaactgaaaataacaacacactattTAATCAAATTATCAGTTT-TGTGTGGAAGTTAA-GAAAAACAT----AGAA-GTTA-TACAAT--AATTCTTAAAATCCAAACAATGTGC--ATAT-AAA--TATTA-T-CG-TAAAGGTATA-TCAAGCTCGTGTACTTTATACAAGCT-ATGTT-TACTCT-GCATGCTAT-TTAATA--
gi|1 : aagattgtgaaaactagaatacacaattgaatttaaaacgatacaaaattaccaaaacagaaacgtcactatagaattgtaaaaacgaatgaaataaattgagatactgagttcgtcttaacatgtatacattggaactgtaaatcatgctttagtacagatttaacaattaataagttattttcaaatctaacgagagaagattcaaaaagaaaagatctttacatgatcttttttagcagatacttgaaggctaaggaaggtgaaagtctccatacattatgtaccataaaaataacacgcacaataatATCAGTTTGTTTGTGGAAGTTAAAGAAAAACAT----AGAAGCTTAGTACAATTAAAATCTTAAAATCCAAACAA-ATGCTGACATATAAAACATGA-TTCGCTAAAGGTATACTCAAACTCATGTACTTTATAC-AGC--AATTTATACTCTTGCATGCTATGTTAATATTAAGCTAATCAT---ATTGAAATTTCTATTTTGGGACAAATTT-ATGGCCGATATCTAAAAACATATG-TACCAATCACAGCCAATGCAAAA--TATCCTGATACAAGTTAACCCGCCGTATTTACTTACGT--TACAA--TA-CCGCCTGTTCC--TGGA-ATTCC-CTCGC-AGTAAGCCTTATATTT---TGCTTGTCTCGACTTTCTC--AACTCT-------G-AAT-TCGT-AAGTACTTAGCCGCTAA-G---CCT--TTTC---GCCAGGCAA--AGCT---C--AGGCGAGA--T-CCAGCTCA-----TTAAACTCTTGC--GCTTATTT----C-TGCAG-----GTTAAGTGCGT-GATAACATCGTTTCCTGCTTATAGCAAAGAGATAAGAAAG---AATATT-------GTGCA-TGAAC---A--AAAGCAAAAGAT-GT-ACATTCATTGCGTGAAACA--AAGAGCGTTT-ATTAAAAAAAATGCTAATCATTTAAACCTTC-CCGTTGCTTTGAATATTCTTTG------ACATGTATTATTT
gi|7 : ttgGTTTA-AAAAAA--GCTTTACAA-GTCG-GACAAT--GATTATTAAAGACCAAACAATGTGC--ATAT-TAA--C------------------TA-TCAGCCTCTTGTACGTTATGC-ATTTTAACTT-TTCTCC-GTGTGATAT-TT--TG--AA--TA-TAATTCAAATGAG-GTTCG-CTTAATGATGT-CTA-ATG-C-AATATTCAAAA-TACCCA-AAC------CCGCTATTCCTAAAGATACC--AACAC-ATTAAGC---TTGCATACAC-AT-GTACTAC-A--TACCCGCC-GTTCC--TGAATATCCT-GACAC-AGTAAG-CCGGTA-CT---TGCTATTTTCG---TCGTC--AATT-T-------GAAAT-TTG--GAATAGAGAG-CG-TA------TCCAGTCTC---ACCA-GCAA--AGCT---C--AT--CAAA--T-CCA-CCC------TT-AGTTCCTGG--G---ATGT----C-TG--C-----GTTAAATA-ATGGATTGCATCGTTTCCTGTA--TATA-AA--------AAAG---AA------TATTGGTGCA-TGAAA---AATAGA--ATGAAGC-GT-ACATTCGTT
gi|8 : aaaA--TAGCTCGACAC-AGTAAGC---CGGTATTTAC-TA-------C-A--TACCTGCT-GTTCC--TGTGTATCCT-CCCAC-GGTTAG-CCGATA-CTGGTTGCTT---TCG---TTTTC--AATTTT-------G-AAC-TCG--GAGTAATGAG-CA-TGC-G---CCG--TCTG---GCCA-TCAA--AACTTTCC--AG--G-----T-GTA-CTC------GT-AACTCCTGA--TT--GTTT----T-T---A-----GTCAAAGC-GTGGATTGCATCGTTTCCTGTA--TAGA-AAGTGAT---AGAAAGGAATATTAATGT--------CGGAG---A--AAA--ATGAGGTGGT-A-ATCCAGTG-GC---GGATCTAGACAGTTT-A-
gi|12 : tacatacctactgttcctgt--TAC-A--CACCCGCC-GTTCC--TGAATAACCC-GTTAC-AATGAG-CTTGTA-TC---CACGGGACTCG---TCCCC--GAC-AC-------G-AA--ATGATGAATACATAG-CA-TAG-G---CAT--CCTC---GCAA-CC-----GCT---C------GAAACTT-CAA-CGC------GT-AGCTTATGATTG---GTTT----CGTT--T-----GTCAAAGA-ATGGATGACATCATTTCCTG----TA---AAGAGGA---AAGA---AA
gi|9 : aca--TAC-ACTTACCCACC-AATCC--TGAGAATCCC-GACAC-AGTGAG-GTTCTA-TT---TACTTTCCTCG---CCCCC--TACATC-------A-AATGTTG--TA-TACCGGG-CA-TG-------CT--TCTCACTGCCA-TCAAGCAGTT---TGAAG--AAAA--T-CCA-A-----------AGTTCCT----G---GTTT----T-TC--ATACTTGTCAAGGC-ACTGATCGCATCATTTCCTGTT--TTAC------AT---AAAA---CA--TT--TATCGATGAATTAGAAGCCA--AAA--CT--GAT-----TATCAATTA-GT---aca
gi|10 : caaaacgacaa--TAC-A--TACTTGCA-GGTCC--TTTAAATCCC-GATAC-AGTGAG-CTTGTA-CT---TGTTCTTTT------------CACTGTCGACACGG-AAG-GTG--GAGTAAGTCG-CG-TAG-G---ATT--TCTC---GCAA-TCAA--AACT---C--AA--AAGC--T-CAA-TCCGAAGCATT-TGTCCCTTG--------TT----C-----------GTCAAAAA-ATGAATTGCGTCATTTCCTGCT--TAGC-A
gi|11 : aacaca--TAC-A--TACTTGCA-GTTCC--TTCAAACCCC-GACAC-AGTGAG-CTTGTA-TT---TGTTTTTTTCA---TTGTCGACAC-G--------G-AAT-GTG--GAGTAAGTCC-CG-TAG-GAAACC-----TG---ACAA-TTAG--TTCT---G--AG--AAGC--T-CAA-CTC------GA-AGCATTTGT--G---CCTT----C-TT--C-----GTCAAAGA-ATGAATTGCGTCATTTCCTGTT--TAAC-Ataatgaaaacatat
gi|16 : gcac--TAC-A--CACCCGCT-GTTCC--TGAATATCCtaatgaaaacata
gi|13 : tttacAC-C--TACCTGCT-GTACCACTG--TAGCCC-GACGCCATCAA--CTTATA-CT---TGCTATTCTCA---TCGCC--AACAAC-------A-AAT-CTG--GAGTATTTGG-CA-TAA-C---CCT--TTTC---TCCA-GTGA--ATCT---T--TG--CAAA--T-TAA-TAC------GG-AGTTGCTGT--G---TTTTACCAT-TG--------GTTAACAA-GTGGATGATATCATTACCTacacacagtcagtagctattt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GTTTCTGAGTATCCCGATACAGCAAGCTTTGGTTTACTACATATCAGCTGTTCATGAACATCTCGATACAGTAAGCCGGTAC
Unaligned ( gi|15 ): TCGACCCTGAGTACCTGGGACTTCATCTCCGTCAAATCATGGATTGCGTCATTTCCTGAGAAAGAAAATGCACGTGA
Alignments
lowQualScore : 33333 1111 111 11 111 1 2222 1 1 1 1 1 1 44444 1111 22222222 111 11111111 2222222222 1111 2222222 111111 1 111 111 7777777777777777777 2 2 2
lowQualScore : 6 6 11111 2222 5 5 77 4 1 6 77 5 77 111 5 7 1 5 1 1 5 5 1 5 5 8 5 99 33 3 777 0 0000 0 2 0 0 0 0 3 0 33 8 55555 8 6 2 4 2 0 99 0000 3 55555555 77 1 3 44 2 2 3 1 2 3 4 44 777 1 4 111 4 99 0 22 444 6 777 4 55 88888888888 55 3 1 3 4 9999 99999999 3 8888888888 99 666 1 44 666 4 0000 888 5 888 2222222 3 6 111111 99 8 8 0 777 3 111 2222222222222222222 7 3 3 7 3
lowQualScore : . . ..... .... . . .. . . . .. . .. ... . . . . . . . . . . . . . .. .. . ... . .... . . . . . . . . .. . ..... . . . . . . .. .... . ........ .. . . .. . . . . . . . .. ... . . ... . .. . .. ... . ... . .. ........... .. . . . . .... ........ . .......... .. ... . .. ... . .... ... . ... ....... . . ...... .. . . . ... . ... ................... . . . . .
lowQualScore : 7 7 88888 1111 7 7 99 3 0 6 99 7 99 666 7 9 9 7 0 0 7 7 7 7 7 9 7 22 88 2 555 0 8888 0 0 0 0 5 0 2 0 00 0 66666 0 4 5 0 2 7 22 8888 9 44444444 99 6 3 66 7 8 3 0 9 6 0 66 000 6 9 222 0 55 7 00 444 4 000 0 55 66666666666 00 6 0 6 1 5555 88888888 6 0000000000 88 444 0 88 222 0 3333 888 0 888 7777777 3 7 888888 22 0 0 0 555 2 000 3333333333333333333 3 3 7 3 7
consensus : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTCT-GCATGATAT-TTAATA--AA--TAATAGT---ATTGGA-TTTC-T--TTTGG-GACGT-TTT-GTGAC-GATATCTAAAA-TATTCG-TACGCATCACC-GCCATTNCTNAATATCCCGATACAG--TAAGCTN--GTATTTACT-A-GT--TACA--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTGAGC-TTGTACTT-GCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAGC-G-TAGGCCTTCTC---GCCAT-CAA--AGCT---C--AGG--AGA--T-CNA-CTCGT--AGCTCCTGN--G---NTTT-C---TN--C--GTCAAAGAATG---GATNGCATCGTTTCCTGTTTA--GCA-A-GAGATAAAA---A-A---TATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GT-ACATCCATTG-GT---ACATCAAGAGCGTTT-A-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
Reference ( family-4245 ) : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TNAAACTCTTGTACTTTATNC-AGCT-AAGTT-TACTCT-GCATGATAT-TTAATA--AA--TAATAAT---ATTGAA-TTTC-T--TTTGG-GACGT-TTT-ATGGC-GATATCTAAAA-TATNCG-TAC--AT-ACC-GCCATTGCTAAATACCCCGACACAG--TAAGCCN--GTATTTACT-A-GT--TACA--TACCCGCC-GTTCC--TGAATATCCC-GNCACAGTGAGC-TTGTACTT-GCTTTTCTCG---TCCCCNACTNCGAAT-TTG--GAGTANNTAGC-G-TAGGCCTTCTC---GCCAT-CAA--AGCT---C--AGG--AGA--T-CNA-CTCNT--AGCTCCTGN--G---GTTT-C---TG--N--GTCAAAGAATG---GATNGCATCGTTTCCTGTTTA--GCA-A-GAGATAAAA---A-A---TATT--TGTCGGTGNA-TGGAA---A--AAA--ATGAGAT-GT-ACATCCATTG-GT---ACATCAAGAGCGTTT-A-TAAAAAAAATGCTAATCACTTAAACCCTCTCCGTTGCTTTGAATATTCTTTGACACATACATGTATTATTT
gi|1 : ATCAGTTTGTTTGTGGAAGTT-AAAGAAAAACAT----AGAAGCTTAGTACAATTAAAATCTTAAAATCCAAACAA-ATGCTGACATATAAAACATGA-TTCGCTAAAGGTATACTCAAACTCATGTACTTTATAC-AGC--AATTTATACTCTTGCATGCTATGTTAATATTAAGCTAATCAT---ATTGAAATTTC-TATTTTGG-GACAAATTT-ATGGCCGATATCTAAAAACATATG-TACCAATCACA-GCCAATGCAAAATATCCTGATACAAGTTAACCCGCCGTATTTACTTACGT--TACAA-TACC-GCCTGTTCC--TGGA-ATTCC-CTCGCAGTAAGCCTTATATTTTGCTTGTCTCGACTTTCTCAACTCTGAAT-TCGT-AAGTACTTAGCCGCTAAGCCTTTTC---GCCAGGCAA--AGCT---C--AGGCGAGA--T-CCAGCTCATTAAACTCTTGC--GCTTATTT-C---TG--CAGGTTAAG---TGCGTGATAACATCGTTTCCTGCTTATAGCA-AAGAGATAAGA---A-AGAATATT-------GTGCA-TGAAC---A--AAAGCAAAAGAT-GT-ACATTCATTGCGTGAAACA--AAGAGCGTTT-ATTAAAAAAAATGCTAATCATTTAAACCTTC-CCGTTGCTTTGAATATTCTTTG------ACATGTATTATTT
gi|10 : ttg--TACA--TACTTGCA-GGTCC--TTTAAATCCC-GATACAGTGAGC-TTGTACTT-GTTCTTTTCA---CTGTCGACACGGAAG-GTG--GAGTAAGTCGC-G-TAGGATTTCTC---GCAAT-CAA--AACT---C--AAA--AGC--T-CAA-TCCGA--AGCATTTGT--C---CCTT-G---TT--C--GTCAAAAAATG---AATTGCGTCATTTCCTGCTTA--GCATA----ATGAAA---ACA---TAT
gi|11 : aacaca--TACA--TACTTGCA-GTTCC--TTCAAACCCC-GACACAGTGAGC-TTGTATTT-GTTTTTTTCA---TTGTCGACACGGAAT-GTG--GAGTAAGTCCC-G-TAGGAAACCTG---ACAAT-TAG--TTCT---G--AGA--AGC--T-CAA-CTCGA--AGCATTTGT--G---CCTT-C---TT--C--GTCAAAGAATG---AATTGCGTCATTTCCTGTTTA--ACA-
gi|12 : gcac--TACA--CACCCGCC-GTTCC--TGAATAACCC-GTTACAATGAGC-TTGTATCC-ACGGGACTCG---TCCCCGAC-ACGAAA-T-GATGAATACATAGC-A-TAGGCATCCTC---GCAAC-C-----GCT---C----G--AAACTT-CAA-CGCGT--AGCTTATGATTG---GTTT-CG--TT--T--GTCAAAGAATG---GATGACATCATTTCCTG--TA----A-A-GAGGAAAGA---A-A---taatgaaaacata
gi|13 : acaACC--TACCTGCT-GTACCACTG--TAGCCC-GACGCCATCAAC-TTATACTT-GCTATTCTCA---TCGCCAACAACAAAT-CTG--GAGTATTTGGC-A-TAACCCTTTTC---TCCAG-TGA--ATCT---T--TGC--AAA--T-TAA-TACGG--AGTTGCTGT--G---TTTTACCA-TT--G--GTTAACAAGTG---GATGATATCATTACCTaca
gi|14 : TTTCTGAGTATCCCGATACAG--CAAGCTT--TGGTTTAC--------TACA--TATCAGCT-GTTCA--TGAACATCTC-GATACAGTAAGC-CGGTACaaatgtaagtttaaagacat
gi|15 : g--T-CGA-CCCTG--AGTACCTGG--G---ACTT-CATCTC--C--GTCAAATCATG---GATTGCGTCATTTCCTG---A--GAA-A-GAAA
gi|16 : TTTACT-A-------CA--CACCCGCT-GTTCC--TGAATATCCA-CACACAGTCAGatgcacgtga
gi|2 : TGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTCT-GCATAATAT-TTAATA--AA--TAATAGT---ATTGGA-TTTCCT--TTTGG-GATGT-TTT-GTGAC-GATATCTAAAA-TATTTG-TACGCATCACC-GCCATTGCTCAATACCCTGATATAG--TAAACTA--GTATTAACT-A-GT--TACA--TACCCGCC-GTTCC--TGAATATCCC-GTCACATTAAGC-TTATATTT-GCTTGTCTCG---TCCCCCACTGTGAAT-TTG--GAGTACTTAGC-G-TAAGCCCTTTC---GCCAT-CAA--AGCT---C--AGG--AGA--T-CCA-CTCTT--AGCTCCTGG--G---GTTT-C---TG--A--GTTAAGTGGTG---GATACCATCGTTTCCTGTTTA--GCA-A-GAGATAAAA---A-A---TCTT--TGTTGGTGAA-TGGAA---A--AAA--ATAAGAT-GT-ACATCCATTG-GT---ACATCAAGAGCGTTT-A-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTtagctattt
gi|3 : TGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-AGCT-A-GTT-AACTCT-GCAT-ATAT-TTAATA--AA--TAATAGT---ATTGGA-TTTC-T--TTTGG-GATGT-TTTTGTGAC-GATA-CTAAAA-TATTTGATACGCAT-ACC-GC-ATTGCTCAATACCCTGATATAG--TAAACTA--GTATT-ACT-A-GT--TACA--TACCCGCC-GTTCC--TGAATATCCCCGTCACATTAAGC-TTATATTT-GCTTGTCTCG---TCCCC-ACTGTGAAT-TTG--G-TTACTTAGC-G-TAATGCTT-TC---GCCAT-CAA--AGCT---C--AGG--AGA--TTCCA-CTCTT--AGCTCCTG---G---GTTT-C---TG--A--GTTAGTG--TG---GATACCATCGTTCTC-GTTTA--GCA-A-GAGATAAAA---A-A---TCTT--TGTTGGTGAA-TGG-A---A--AAA--ATAAGAT-GTAACATCCATTG-GT---ACATCAAGAGCGTTTAA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTc
gi|4 : tTGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTCT-GCATAATAT-TTAATA--
gi|5 : attgggaaaaactacaatatacaactgaattaaaaacgtggcaaaattactaaaacaaagattttgcatgtactataaaattgcaaaatgaatgaaataaaattgagatactgatatttcgttttatacattggaattgtaaatcatgtttttatgcagaattatcaaagatgaatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatttacaataatccttttagcaaaacttgaaggctaaaggaagatgaatgcccccccccccctcccgcacacacacattatgcaacatgaaaataacacacactattTGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-AGCT--AGTT-AACTCT-GCAT-ATAT-TTAAT
gi|6 : aaatacgaattgggaaaaactacaatatacaactgattaaaaacgtggcaaaatttactaaaacaaagattttgcatgtatctataaaattgcaaaatgaatgaaataaaattgagatactgtatatttcgttttatacttggattgtaaatcatgtttttaatgcgattatcaaaagtgatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatgttaaataatcgttttagcaatactgaagtctaaaggaagatgaatgcccccccccctccgcacacacacattaatgcaactgaaaataacaacacactattTAATCAAATTATCAGTTT-TGTGTGGAAGTT-AA-GAAAAACAT----AGAA-GTTA-TACAAT--AATTCTTAAAATCCAAACAATGTGC--ATAT-AAA--TATTA-T-CG-TAAAGGTATA-TCAAGCTCGTGTACTTTATACAAGCT-ATGTT-TACTCT-GCATGCTAT-TTAATA--
gi|7 : aagattgtgaaaactagaatacacaattgaatttaaaacgatacaaaattaccaaaacagaaacgtcactatagaattgtaaaaacgaatgaaataaattgagatactgagttcgtcttaacatgtatacattggaactgtaaatcatgctttagtacagatttaacaattaataagttattttcaaatctaacgagagaagattcaaaaagaaaagatctttacatgatcttttttagcagatacttgaaggctaaggaaggtgaaagtctccatacattatgtaccataaaaataacacgcacaataatAAAAAAAGCTTTACAA-GTCG-GACAAT--GATTATTAAAGACCAAACAATGTGC--ATAT-TAA--C------------------TA-TCAGCCTCTTGTACGTTATGC-ATTTTAACTT-TTCTCC-GTGTGATAT-TT--TG--AA--TA-TAATTCAAATGAG-GTTC-G--CTTAATGATGT-CTA-ATG-C-AATATTCAAAA-TACCCA-AAC------CC-GCTATTCCTAAAGATACCAACACAT--TAAGCTT--GCATACACA-T-GTACTACA--TACCCGCC-GTTCC--TGAATATCCT-GACACAGTAAGC-CGGTACTT-GCTATTTTCG---TCGTCAATTTGAAAT-TTG--GAATAGAGAGC-G-TATCCAGTCTC---ACCAG-CAA--AGCT---C--ATC--AAA--T-CCA-CCCTT--AGTTCCTGG--G---ATGT-C---TG--C--GTTAAATAATG---GATTGCATCGTTTCCTGTATA--TAA-A------AAAG---A-A---TATT------GGTGCA-TGAAA---AATAGA--ATGAAGC-GT-ACATTCGTT
gi|8 : aaagttt-TAC--AT-ACCTACTGTTCCTGTATAGCTCGACACAG--TAAGCCG--GTATTTACT-A-------CA--TACCTGCT-GTTCC--TGTGTATCCT-CCCACGGTTAGC-CGATACTG-GTTGCTTTCG---TTTTCAATTTTGAAC-TCG--GAGTAATGAGC-A-TGCGCCGTCTG---GCCAT-CAA--AACTTTCC--AGG-------T-GTA-CTCGT--AACTCCTGA--TT--GTTT-T---T---A--GTCAAAGCGTG---GATTGCATCGTTTCCTGTATA--GAA-A-GTGATAGAAAGGA-A---TATTAATGTC--------GGAG---A--AAA--ATGAGGTGGT-A-ATCCAGTG-GC---GGATCTAGACAGTTT-A-
gi|9 : --TACACTTACCCACC-AATCC--TGAGAATCCC-GACACAGTGAGG-TTCTATTT-ACTTTCCTCG---CCCCCTACATCAAATGTTG--TA-TACCGGGC-A-TG---CTTCTCACTGCCAT-CAAGCAGTT---TGAAGA--AAA--T-CCA-A------AGTTCCTGG--T---TTTT-CA--TACTT--GTCAAGGCACT---GATCGCATCATTTCCTGTTTT--AC-------AT--AA---A-A---CATT--TATCGATGAATTAGAAGCCA--AAA--CTGA
Alignments
lowQualScore : 33333 1111 111 2222222222222 11 111 1 22 1 11 1 11 1 1 11111 111 22222222 1111 11111111 22222222 1111 2222222 111111 111 1 111 2 4444444 11 222 1 1 1
lowQualScore : 6 6 11111 2222 5 5 77 4 1 6 77 5 77 111 5 7 1 5 1 9999999999999 999 66 1 8 5 99 33 3 777 0 33 0 22 0 77 3 0 33 0 44444 6 1 1 99 111 22 3 55555555 3 44 3 44 3 1 3 0 3 3 3 22 777 1 6 999 4 99 0 22 4 4 6 777 4 55 8888888888 55 3 1 3 4 0000 33333333 3 11111111 555 666 1 0000 444 4 555 888 888 5 2222222 3 6 111111 222 8 8 0 777 3 0 3333333 88 333 7 3 3 7 3
lowQualScore : . . ..... .... . . .. . . . .. . .. ... . . . . . ............. ... .. . . . .. .. . ... . .. . .. . .. . . .. . ..... . . . .. ... .. . ........ . .. . .. . . . . . . . .. ... . . ... . .. . .. . . . ... . .. .......... .. . . . . .... ........ . ........ ... ... . .... ... . ... ... ... . ....... . . ...... ... . . . ... . . ....... .. ... . . . . .
lowQualScore : 7 7 88888 1111 7 7 99 3 0 6 99 7 99 666 7 9 9 7 3 9999999999999 444 66 7 9 7 22 88 2 555 0 88 0 00 0 00 2 0 22 0 00000 5 0 0 22 777 77 9 00000000 1 22 1 22 8 9 1 8 2 1 3 00 000 6 4 888 0 55 7 66 0 0 4 000 0 55 8888888888 00 6 0 6 1 1111 77777777 6 22222222 888 444 0 3333 777 0 999 888 888 0 7777777 0 7 888888 333 0 0 0 555 2 0 3333333 33 333 3 3 3 3 3
consensus : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTAT------------AC-A-GCTAAGTTTACTCTGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTCC-TTTTGG-GAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
Reference ( family-4245 ) : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTAT------------AC-A-GCTAAGTTTACTCTGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC--TTTTGG-GAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTGAG-CTTGTA-CTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
gi|1 : ATCAGTTTGTTTGTGGAAGTT-AAAGAAAAACAT----AGAAGCTTAGTACAATTAAAATCTTAAAATCCAAACAA-ATGCTGACATATAAAACATGA-TTCGCTAAAGGTATACTCAAACTCATGTACTTTATACAGCAATTTATAC---------TCT----TGCATGCTATGTTAATATTAAGCTAATCAT---ATTGAAATTTCTATTTTGG-GACAAATTT-ATGGCCGATATCTAAAAACATATG-TACCAATCACAGCCAATGCAAAATATCCTGATACAAGTTAACCCGC-CGTATTTACTTACGT--TACAA--TA-CCGCCTGTTCC--TGGA-ATTCC-CTCGCAGTAAGCCTTATATTTTGCTTGTCTCGACTTTCTCAACTCTGAAT-TCGT-AAGTACTTAGCCGCTAAGCCTTTTC---GCCAGGCAA--AGCT---C--AGGCGAGA--T-CCAGCTCATTAAACTCTTG--CGCTTATTT-C---TGCAGGTTA---AGTGCGTGATAACATCGTTTCCTGCTTATAGCAA-AGAGATAAGAAAG---A-ATATT-------GTGCA-TGAAC---A--AAAGCAAAAGAT-GTA-CATTCATTGCGTGAAACA--AAGAGCGTTTATTAAAAAAAATGCTAATCATTTAAACCTTC-CCGTTGCTTTGAATATTCTTTG------ACATGTATTATTT
gi|10 : ttg--TAC-A--TACTTGCA-GGTCC--TTTAAATCCC-GATACAGTGAG-CTTGTA-CTTGTTCTTTTCA---CTGTCGACACGGAAG-GTG--GAGTAAGTCG-CG-TAGGATTTCTC---GCAA-TCAA--AACT---C--AA--AAGC--T-CAA-TCCGA--AGCATTTG--TC---CCTT-G---TTC--GTCAAAAAATG---AATTGCGTCATTTCCTGCT--TAGC-ATA---AT---GAAA---ACATAT
gi|11 : aacaca--TAC-A--TACTTGCA-GTTCC--TTCAAACCCC-GACACAGTGAG-CTTGTA-TTTGTTTTTTTCA---TTGTCGACACGGAAT-GTG--GAGTAAGTCC-CG-TAGGAAACCTG---ACAA-TTAG--TTCT---G--AG--AAGC--T-CAA-CTCGA--AGCATTTG--TG---CCTT-C---TTC--GTCAAAGAATG---AATTGCGTCATTTCCTGTT--TAAC-A-
gi|12 : gcac--TAC-A--CACCCGCC-GTTCC--TGAATAACCC-GTTACAATGAG-CTTGTA-TCCACGGGACTCG---TCCCCGAC-ACGAA--ATGATGAATACATAG-CA-TAGGCATCCTC---GCAA-CC-----GCT---C------GAAACTT-CAA-CGCGT--AGCTTATGATTG---GTTT-CG--TTT--GTCAAAGAATG---GATGACATCATTTCCTG----TA---A-AGAGGA---AAGA---A-Ataatgaaaacata
gi|13 : acaAC-C--TACCTGCT-GTACCACTG--TAGCCC-GACGCCATCAA-CTTATA-CTTGCTATTCTCA---TCGCCAACAACAAAT-CTG--GAGTATTTGG-CA-TAACCCTTTTC---TCCA-GTGA--ATCT---T--TG--CAAA--T-TAA-TACGG--AGTTGCTG--TG---TTTTACCA-TTG--GTTAACAAGTG---GATGATATCATTACCTaca
gi|14 : TTTCTGAGTATCCCGATACAG--CAA---GCTTTGGTTTAC--------TAC-A--TATCAGCT-GTTCA--TGAACATCTC-GATACAGTAAG-CCGGTA-Caaatgtaagtttaaagacat
gi|15 : g--T-CGA-CCCTG--AGTACCTG--GG---ACTT-CATCTCC--GTCAAATCATG---GATTGCGTCATTTCCTG-----AGA-A-AGAAA
gi|16 : TTTAC-TA-------C-A--CACCCGCT-GTTCC--TGAATATCCA-CACACAGTCAG-atgcacgtga
gi|2 : TGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTAT------------AC-A-GCTAAGTTTACTCTGCATAATAT-TTAATA--AA--TAATAGT---ATTG-GATTTCC-TTTTGG-GAT-GTTTT-GTGA-CGATATCT-AAAATATTTG-TACGCATCACCGCCATTGCTCAATACCCTGATATAG--TAA---ACTAGTATTAAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCCCACTGTGAAT-TTG--GAGTACTTAG-CG-TAAGCCCTTTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CCA-CTCTT--AGCTCCTG--GG---GTTT-C---TGA--GTTAAGTGGTG---GATACCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA--ATAAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTtagctattt
gi|3 : TGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTAT------------TC-A-GCTA-GTTAACTCTGCAT-ATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC--TTTTGG-GAT-GTTTTTGTGA-CGATA-CT-AAAATATTTGATACGCAT-ACCGC-ATTGCTCAATACCCTGATATAG--TAA---ACTAGTATT-AC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCCCGTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCC-ACTGTGAAT-TTG--G-TTACTTAG-CG-TAATGCTT-TC---GCCA-TCAA--AGCT---C--AG--GAGA--TTCCA-CTCTT--AGCTCCTG--GG----TTT-C---TGA--GTTAGTG--TG---GATACCATCGTTCTC-GTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA---TAAGAT-GTAACATCCATTG-GT---ACATCAAGAGCGTTTAATAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTc
gi|4 : tTGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTAT------------AC-A-GCTAAGTTTACTCTGCATAATAT-TTAATA--
gi|5 : attgggaaaaactacaatatacaactgaattaaaaacgtggcaaaattactaaaacaaagattttgcatgtactataaaattgcaaaatgaatgaaataaaattgagatactgatatttcgttttatacattggaattgtaaatcatgtttttatgcagaattatcaaagatgaatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatttacaataatccttttagcaaaacttgaaggctaaaggaagatgaatgcccccccccccctcccgcacacacacattatgcaacatgaaaataacacacactattTGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTAT------------TC-A-GCT-AGTTAACTCTGCAT-ATAT-TTAAT
gi|6 : aaatacgaattgggaaaaactacaatatacaactgattaaaaacgtggcaaaatttactaaaacaaagattttgcatgtatctataaaattgcaaaatgaatgaaataaaattgagatactgtatatttcgttttatacttggattgtaaatcatgtttttaatgcgattatcaaaagtgatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatgttaaataatcgttttagcaatactgaagtctaaaggaagatgaatgcccccccccctccgcacacacacattaatgcaactgaaaataacaacacactattTAATCAAATTATCAGTTT-TGTGTGGAAGTT-AA-GAAAAACAT----AGAA-GTTA-TACAAT--AATTCTTAAAATCCAAACAATGTGC--ATAT-AAA--TATTA-T-CG-TAAAGGTATA-TCAAGCTCGTGTACTTTAT------------ACAA-GCTATGTTTACTCTGCATGCTAT-TTAATA--
gi|7 : aagattgtgaaaactagaatacacaattgaatttaaaacgatacaaaattaccaaaacagaaacgtcactatagaattgtaaaaacgaatgaaataaattgagatactgagttcgtcttaacatgtatacattggaactgtaaatcatgctttagtacagatttaacaattaataagttattttcaaatctaacgagagaagattcaaaaagaaaagatctttacatgatcttttttagcagatacttgaaggctaaggaaggtgaaagtctccatacattatgtaccataaaaataacacgcacaataatAAAAAAAGCTTTACAA-GTCG-GACAAT--GATTATTAAAGACCAAACAATGTGC--ATAT-TAA--C------------------TA-TCAGCCTCTTGTACGTTAT------------GC-ATTTTAACTTTTCTCCGTGTGATAT-TT--TG--AA--T-ATAATTCAAATG-AGGTTC--GCTTAATGAT-GTCTA-ATG--CAATATTC-AAAATACCCA-AAC------CCGCTATTCCTAAAGATACCAACACAT--TAA---GCTTGCATACAC-AT-GTACTAC-A--TACCCGCC-GTTCC--TGAATATCCT-GACACAGTAAG-CCGGTA-CTTGCTATTTTCG---TCGTCAATTTGAAAT-TTG--GAATAGAGAG-CG-TATCCAGTCTC---ACCA-GCAA--AGCT---C--AT--CAAA--T-CCA-CCCTT--AGTTCCTG--GG---ATGT-C---TGC--GTTAAATAATG---GATTGCATCGTTTCCTGTA--TATA-A-A--------AAAG---A-ATATT------GGTGCA-TGAAA---AATAGA--ATGAAGC-GTA-CATTCGTT
gi|8 : aaagttt--TAC-A--TACCTACT-GTTCC--TGTATAGCTC-GACACAGTAAG-CCGGTA-TTTACT
gi|8 : TTCCTGTATAGCTCGACACAG--TAA---GCCGGTATTTAC-TA-------C-A--TACCTGCT-GTTCC--TGTGTATCCT-CCCACGGTTAG-CCGATA-CTGGTTGCTTTCG---TTTTCAATTTTGAAC-TCG--GAGTAATGAG-CA-TGCGCCGTCTG---GCCA-TCAA--AACTTTCC--AG--G-----T-GTA-CTCGT--AACTCCTG--AT---TGTT-T---TTA--GTCAAAGCGTG---GATTGCATCGTTTCCTGTA--TAGA-A-AGTGAT---AGAAAGGA-ATATTAATGTC--------GGAG---A--AAA--ATGAGGTGGTA--ATCCAGTG-GC---GGATCTAGACAGTTTA-acatacctgctgttcctgtgtatcctcccacggttagccgatactggttgctttcgttttcaattttgaactcggagtaatgagcatgcgccgtctggccatcaaaactttccaggtgtactcgtaactcctgattgtttttagtcaaagcgtggattgcatcgtttcctgtatagaaagtgatagaaaggaatattaatgtcggagaaaaatgaggtggtaatccagtggcggatctagacagttta
gi|9 : tacatacctactg--TAC-ACTTACCCACC-AATCC--TGAGAATCCC-GACACAGTGAG-GTTCTA-TTTACTTTCCTCG---CCCCCTACATCAAATGTTG--TA-TACCGGG-CA-TG---CTTCTCACTGCCA-TCAAGCAGTT---TGAAG--AAAA--T-CCA-A------AGTTCCTG--GT---TTTT-CA--TACTTGTCAAGGCACT---GATCGCATCATTTCCTGTT--TTAC-------AT-----AA---A-ACATT--TATCGATGAATTAGAAGCCA--AAA--CTGA
Alignments
lowQualScore : 33333 1111 111 11 111 1 22 11 1 11 1 1 11111 111 22222 1111 11111111 22222222 1111 2222222 111111 111 1 111 2 4444444 11 222 1 1 1
lowQualScore : 6 6 11111 2222 5 5 77 4 1 6 77 5 77 111 5 7 1 5 1 0 5 5 1 5 5 8 5 99 33 3 777 0 22 22 0 77 3 0 33 0 44444 6 1 1 99 111 22 3 5 33333 3 44 3 44 3 1 3 0 1 3 3 22 777 1 6 999 4 99 0 22 4 4 6 777 4 55 8888888888 55 3 1 3 4 0000 33333333 3 11111111 555 666 1 0000 444 4 555 888 888 5 2222222 3 6 111111 222 8 8 0 777 3 0 3333333 88 333 7 3 3 7 3
lowQualScore : . . ..... .... . . .. . . . .. . .. ... . . . . . . . . . . . . . .. .. . ... . .. .. . .. . . .. . ..... . . . .. ... .. . . ..... . .. . .. . . . . . . . .. ... . . ... . .. . .. . . . ... . .. .......... .. . . . . .... ........ . ........ ... ... . .... ... . ... ... ... . ....... . . ...... ... . . . ... . . ....... .. ... . . . . .
lowQualScore : 7 7 88888 1111 7 7 99 3 0 6 99 7 99 666 7 9 9 7 3 6 7 7 7 7 7 9 7 22 88 2 555 0 88 00 0 00 2 0 22 0 00000 5 0 0 22 777 77 9 7 00000 1 22 1 22 8 9 1 8 3 1 3 00 000 6 4 888 0 55 7 66 0 0 4 000 0 55 8888888888 00 6 0 6 1 1111 77777777 6 22222222 888 444 0 3333 777 0 999 888 888 0 7777777 0 7 888888 333 0 0 0 555 2 0 3333333 33 333 3 3 3 3 3
consensus : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-A-GCTAAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTCN-TTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
Reference ( family-4245 ) : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-A-GCTAAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTCC-TTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
gi|1 : ATCAGTTTGTTTGTGGAAGTT-AAAGAAAAACAT----AGAAGCTTAGTACAATTAAAATCTTAAAATCCAAACAA-ATGCTGACATATAAAACATGA-TTCGCTAAAGGTATACTCAAACTCATGTACTTTATAC-A-GC-AATTTATACTCTTGCATGCTATGTTAATATTAAGCTAATCAT---ATTGAAATTTCTATTTTGGGACAAATTT-ATGGCCGATATCTAAAAACATATG-TACCAATCACAGCCAATGCAAAATATCCTGATACAAGTTAACCCGC-CGTATTTACTTACGT--TACAA--TA-CCGCCTGTTCC--TGGA-ATTCC-CTCGCAGTAAGCCTTATATTTTGCTTGTCTCGACTTTCTCAACTCTGAAT-TCGT-AAGTACTTAGCCGCTAAGCCTTTTC---GCCAGGCAA--AGCT---C--AGGCGAGA--T-CCAGCTCATTAAACTCTTG--CGCTTATTT-C---TGCAGGTTA---AGTGCGTGATAACATCGTTTCCTGCTTATAGCAA-AGAGATAAGAAAG---A-ATATT-------GTGCA-TGAAC---A--AAAGCAAAAGAT-GTA-CATTCATTGCGTGAAACA--AAGAGCGTTTATTAAAAAAAATGCTAATCATTTAAACCTTC-CCGTTGCTTTGAATATTCTTTG------ACATGTATTATTT
gi|10 : ttg--TAC-A--TACTTGCA-GGTCC--TTTAAATCCC-GATACAGTGAG-CTTGTA-CTTGTTCTTTTCA---CTGTCGACACGGAAG-GTG--GAGTAAGTCG-CG-TAGGATTTCTC---GCAA-TCAA--AACT---C--AA--AAGC--T-CAA-TCCGA--AGCATTTG--TC---CCTT-G---TTC--GTCAAAAAATG---AATTGCGTCATTTCCTGCT--TAGC-ATA---AT---GAAA---ACATAT
gi|11 : aacaca--TAC-A--TACTTGCA-GTTCC--TTCAAACCCC-GACACAGTGAG-CTTGTA-TTTGTTTTTTTCA---TTGTCGACACGGAAT-GTG--GAGTAAGTCC-CG-TAGGAAACCTG---ACAA-TTAG--TTCT---G--AG--AAGC--T-CAA-CTCGA--AGCATTTG--TG---CCTT-C---TTC--GTCAAAGAATG---AATTGCGTCATTTCCTGTT--TAAC-A-
gi|12 : gcac--TAC-A--CACCCGCC-GTTCC--TGAATAACCC-GTTACAATGAG-CTTGTA-TCCACGGGACTCG---TCCCCGAC-ACGAA--ATGATGAATACATAG-CA-TAGGCATCCTC---GCAA-CC-----GCT---C------GAAACTT-CAA-CGCGT--AGCTTATGATTG---GTTT-CG--TTT--GTCAAAGAATG---GATGACATCATTTCCTG----TA---A-AGAGGA---AAGA---A-Ataatgaaaacata
gi|13 : acaAC-C--TACCTGCT-GTACCACTG--TAGCCC-GACGCCATCAA-CTTATA-CTTGCTATTCTCA---TCGCCAACAACAAAT-CTG--GAGTATTTGG-CA-TAACCCTTTTC---TCCA-GTGA--ATCT---T--TG--CAAA--T-TAA-TACGG--AGTTGCTG--TG---TTTTACCA-TTG--GTTAACAAGTG---GATGATATCATTACCTaca
gi|14 : TTTCTGAGTATCCCGATACAG--CAA---GCTTTGGTTTAC-TA-------C-A--TATCAGCT-GTTCA--TGAACATCTC-GATACAGTAAG-CCGGTA-aaatgtaagtttaaagacat
gi|15 : g--T-CGA-CCCTG--AGTACCTG--GG---ACTT-CATCTCC--GTCAAATCATG---GATTGCGTCATTTCCTG-----AGA-A-AGAAAc
gi|16 : TTTAC-TA-------C-A--CACCCGCT-GTTCC--TGAATATCCA-CACACAGTCAG-atgcacgtga
gi|2 : TGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-A-GCTAAGTT-TACTC-TGCATAATAT-TTAATA--AA--TAATAGT---ATTG-GATTTCC-TTTTGGGAT-GTTTT-GTGA-CGATATCT-AAAATATTTG-TACGCATCACCGCCATTGCTCAATACCCTGATATAG--TAA---ACTAGTATTAAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCCCACTGTGAAT-TTG--GAGTACTTAG-CG-TAAGCCCTTTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CCA-CTCTT--AGCTCCTG--GG---GTTT-C---TGA--GTTAAGTGGTG---GATACCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA--ATAAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTtagctattt
gi|3 : TGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-A-GCTA-GTT-AACTC-TGCAT-ATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC--TTTTGGGAT-GTTTTTGTGA-CGATA-CT-AAAATATTTGATACGCAT-ACCGC-ATTGCTCAATACCCTGATATAG--TAA---ACTAGTATT-AC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCCCGTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCC-ACTGTGAAT-TTG--G-TTACTTAG-CG-TAATGCTT-TC---GCCA-TCAA--AGCT---C--AG--GAGA--TTCCA-CTCTT--AGCTCCTG--GG----TTT-C---TGA--GTTAGTG--TG---GATACCATCGTTCTC-GTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA---TAAGAT-GTAACATCCATTG-GT---ACATCAAGAGCGTTTAATAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTc
gi|4 : tTGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-A-GCTAAGTT-TACTC-TGCATAATAT-TTAATA--
gi|5 : attgggaaaaactacaatatacaactgaattaaaaacgtggcaaaattactaaaacaaagattttgcatgtactataaaattgcaaaatgaatgaaataaaattgagatactgatatttcgttttatacattggaattgtaaatcatgtttttatgcagaattatcaaagatgaatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatttacaataatccttttagcaaaacttgaaggctaaaggaagatgaatgcccccccccccctcccgcacacacacattatgcaacatgaaaataacacacactattTGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-A-GCT-AGTT-AACTC-TGCAT-ATAT-TTAAT
gi|6 : aaatacgaattgggaaaaactacaatatacaactgattaaaaacgtggcaaaatttactaaaacaaagattttgcatgtatctataaaattgcaaaatgaatgaaataaaattgagatactgtatatttcgttttatacttggattgtaaatcatgtttttaatgcgattatcaaaagtgatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatgttaaataatcgttttagcaatactgaagtctaaaggaagatgaatgcccccccccctccgcacacacacattaatgcaactgaaaataacaacacactattTAATCAAATTATCAGTTT-TGTGTGGAAGTT-AA-GAAAAACAT----AGAA-GTTA-TACAAT--AATTCTTAAAATCCAAACAATGTGC--ATAT-AAA--TATTA-T-CG-TAAAGGTATA-TCAAGCTCGTGTACTTTATACAA-GCTATGTT-TACTC-TGCATGCTAT-TTAATA--
gi|7 : aagattgtgaaaactagaatacacaattgaatttaaaacgatacaaaattaccaaaacagaaacgtcactatagaattgtaaaaacgaatgaaataaattgagatactgagttcgtcttaacatgtatacattggaactgtaaatcatgctttagtacagatttaacaattaataagttattttcaaatctaacgagagaagattcaaaaagaaaagatctttacatgatcttttttagcagatacttgaaggctaaggaaggtgaaagtctccatacattatgtaccataaaaataacacgcacaataatAAAAAAAGCTTTACAA-GTCG-GACAAT--GATTATTAAAGACCAAACAATGTGC--ATAT-TAA--C------------------TA-TCAGCCTCTTGTACGTTATGC-ATTTTAACTT-TTCTC-CGTGTGATAT-TT--TG--AA--T-ATAATTCAAATG-AGGTTCG-CTTAATGAT-GTCTA-ATG--CAATATTC-AAAATACCCA-AAC------CCGCTATTCCTAAAGATACCAACACAT--TAA---GCTTGCATACAC-AT-GTACTAC-A--TACCCGCC-GTTCC--TGAATATCCT-GACACAGTAAG-CCGGTA-CTTGCTATTTTCG---TCGTCAATTTGAAAT-TTG--GAATAGAGAG-CG-TATCCAGTCTC---ACCA-GCAA--AGCT---C--AT--CAAA--T-CCA-CCCTT--AGTTCCTG--GG---ATGT-C---TGC--GTTAAATAATG---GATTGCATCGTTTCCTGTA--TATA-A-A--------AAAG---A-ATATT------GGTGCA-TGAAA---AATAGA--ATGAAGC-GTA-CATTCGTT
gi|8 : aaagttt--TAC-A--TACCTACT-GTTCC--TGTATAGCTC-GACACAGTAAG-CCGGTA-TTTACT
gi|8 : TTCCTGTATAGCTCGACACAG--TAA---GCCGGTATTTAC-TA-------C-A--TACCTGCT-GTTCC--TGTGTATCCT-CCCACGGTTAG-CCGATA-CTGGTTGCTTTCG---TTTTCAATTTTGAAC-TCG--GAGTAATGAG-CA-TGCGCCGTCTG---GCCA-TCAA--AACTTTCC--AG--G-----T-GTA-CTCGT--AACTCCTG--AT---TGTT-T---TTA--GTCAAAGCGTG---GATTGCATCGTTTCCTGTA--TAGA-A-AGTGAT---AGAAAGGA-ATATTAATGTC--------GGAG---A--AAA--ATGAGGTGGTA--ATCCAGTG-GC---GGATCTAGACAGTTTA-acatacctgctgttcctgtgtatcctcccacggttagccgatactggttgctttcgttttcaattttgaactcggagtaatgagcatgcgccgtctggccatcaaaactttccaggtgtactcgtaactcctgattgtttttagtcaaagcgtggattgcatcgtttcctgtatagaaagtgatagaaaggaatattaatgtcggagaaaaatgaggtggtaatccagtggcggatctagacagttta
gi|9 : tacatacctactg--TAC-ACTTACCCACC-AATCC--TGAGAATCCC-GACACAGTGAG-GTTCTA-TTTACTTTCCTCG---CCCCCTACATCAAATGTTG--TA-TACCGGG-CA-TG---CTTCTCACTGCCA-TCAAGCAGTT---TGAAG--AAAA--T-CCA-A------AGTTCCTG--GT---TTTT-CA--TACTTGTCAAGGCACT---GATCGCATCATTTCCTGTT--TTAC-------AT-----AA---A-ACATT--TATCGATGAATTAGAAGCCA--AAA--CTGA
Alignments
lowQualScore : 33333 1111 111 11 111 1 22 11 1 11 1 1 11111 111 22222222 1111 11111111 22222222 1111 2222222 111111 111 1 111 2 4444444 11 222 1 1 1
lowQualScore : 6 6 11111 2222 5 5 77 4 1 6 77 5 77 111 5 7 1 5 1 0 5 5 1 5 5 8 5 99 33 3 777 0 00 22 0 77 3 0 33 0 44444 6 1 1 99 111 22 3 55555555 3 44 3 44 3 1 3 0 1 3 3 22 777 1 6 999 4 99 0 22 4 4 6 777 4 55 8888888888 55 3 1 3 4 0000 33333333 3 11111111 555 666 1 0000 444 4 555 888 888 5 2222222 3 6 111111 222 8 8 0 777 3 0 3333333 88 333 7 3 3 7 3
lowQualScore : . . ..... .... . . .. . . . .. . .. ... . . . . . . . . . . . . . .. .. . ... . .. .. . .. . . .. . ..... . . . .. ... .. . ........ . .. . .. . . . . . . . .. ... . . ... . .. . .. . . . ... . .. .......... .. . . . . .... ........ . ........ ... ... . .... ... . ... ... ... . ....... . . ...... ... . . . ... . . ....... .. ... . . . . .
lowQualScore : 7 7 88888 1111 7 7 99 3 0 6 99 7 99 666 7 9 9 7 3 6 7 7 7 7 7 9 7 22 88 2 555 0 88 00 0 00 2 0 22 0 00000 5 0 0 22 777 77 9 00000000 1 22 1 22 8 9 1 8 3 1 3 00 000 6 4 888 0 55 7 66 0 0 4 000 0 55 8888888888 00 6 0 6 1 1111 77777777 6 22222222 888 444 0 3333 777 0 999 888 888 0 7777777 0 7 888888 333 0 0 0 555 2 0 3333333 33 333 3 3 3 3 3
consensus : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-A-GCTAAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-GTTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
Reference ( family-4245 ) : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-A-GCTAAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-NTTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
gi|1 : ATCAGTTTGTTTGTGGAAGTT-AAAGAAAAACAT----AGAAGCTTAGTACAATTAAAATCTTAAAATCCAAACAA-ATGCTGACATATAAAACATGA-TTCGCTAAAGGTATACTCAAACTCATGTACTTTATAC-A-GC-AATTTATACTCTTGCATGCTATGTTAATATTAAGCTAATCAT---ATTGAAATTTCTATTTTGGGACAAATTT-ATGGCCGATATCTAAAAACATATG-TACCAATCACAGCCAATGCAAAATATCCTGATACAAGTTAACCCGC-CGTATTTACTTACGT--TACAA--TA-CCGCCTGTTCC--TGGA-ATTCC-CTCGCAGTAAGCCTTATATTTTGCTTGTCTCGACTTTCTCAACTCTGAAT-TCGT-AAGTACTTAGCCGCTAAGCCTTTTC---GCCAGGCAA--AGCT---C--AGGCGAGA--T-CCAGCTCATTAAACTCTTG--CGCTTATTT-C---TGCAGGTTA---AGTGCGTGATAACATCGTTTCCTGCTTATAGCAA-AGAGATAAGAAAG---A-ATATT-------GTGCA-TGAAC---A--AAAGCAAAAGAT-GTA-CATTCATTGCGTGAAACA--AAGAGCGTTTATTAAAAAAAATGCTAATCATTTAAACCTTC-CCGTTGCTTTGAATATTCTTTG------ACATGTATTATTT
gi|10 : ttg--TAC-A--TACTTGCA-GGTCC--TTTAAATCCC-GATACAGTGAG-CTTGTA-CTTGTTCTTTTCA---CTGTCGACACGGAAG-GTG--GAGTAAGTCG-CG-TAGGATTTCTC---GCAA-TCAA--AACT---C--AA--AAGC--T-CAA-TCCGA--AGCATTTG--TC---CCTT-G---TTC--GTCAAAAAATG---AATTGCGTCATTTCCTGCT--TAGC-ATA---AT---GAAA---ACATAT
gi|11 : aacaca--TAC-A--TACTTGCA-GTTCC--TTCAAACCCC-GACACAGTGAG-CTTGTA-TTTGTTTTTTTCA---TTGTCGACACGGAAT-GTG--GAGTAAGTCC-CG-TAGGAAACCTG---ACAA-TTAG--TTCT---G--AG--AAGC--T-CAA-CTCGA--AGCATTTG--TG---CCTT-C---TTC--GTCAAAGAATG---AATTGCGTCATTTCCTGTT--TAAC-A-
gi|12 : gcac--TAC-A--CACCCGCC-GTTCC--TGAATAACCC-GTTACAATGAG-CTTGTA-TCCACGGGACTCG---TCCCCGAC-ACGAA--ATGATGAATACATAG-CA-TAGGCATCCTC---GCAA-CC-----GCT---C------GAAACTT-CAA-CGCGT--AGCTTATGATTG---GTTT-CG--TTT--GTCAAAGAATG---GATGACATCATTTCCTG----TA---A-AGAGGA---AAGA---A-Ataatgaaaacata
gi|13 : acaAC-C--TACCTGCT-GTACCACTG--TAGCCC-GACGCCATCAA-CTTATA-CTTGCTATTCTCA---TCGCCAACAACAAAT-CTG--GAGTATTTGG-CA-TAACCCTTTTC---TCCA-GTGA--ATCT---T--TG--CAAA--T-TAA-TACGG--AGTTGCTG--TG---TTTTACCA-TTG--GTTAACAAGTG---GATGATATCATTACCTaca
gi|14 : TTTCTGAGTATCCCGATACAG--CAA---GCTTTGGTTTAC--------TAC-A--TATCAGCT-GTTCA--TGAACATCTC-GATACAGTAAG-CCGGTA-aaatgtaagtttaaagacat
gi|15 : g--T-CGA-CCCTG--AGTACCTG--GG---ACTT-CATCTCC--GTCAAATCATG---GATTGCGTCATTTCCTG-----AGA-A-AGAAAc
gi|16 : TTTAC-TA-------C-A--CACCCGCT-GTTCC--TGAATATCCA-CACACAGTCAG-atgcacgtga
gi|2 : TGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-A-GCTAAGTT-TACTC-TGCATAATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-CTTTTGGGAT-GTTTT-GTGA-CGATATCT-AAAATATTTG-TACGCATCACCGCCATTGCTCAATACCCTGATATAG--TAA---ACTAGTATTAAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCCCACTGTGAAT-TTG--GAGTACTTAG-CG-TAAGCCCTTTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CCA-CTCTT--AGCTCCTG--GG---GTTT-C---TGA--GTTAAGTGGTG---GATACCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA--ATAAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTtagctattt
gi|3 : TGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-A-GCTA-GTT-AACTC-TGCAT-ATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC--TTTTGGGAT-GTTTTTGTGA-CGATA-CT-AAAATATTTGATACGCAT-ACCGC-ATTGCTCAATACCCTGATATAG--TAA---ACTAGTATT-AC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCCCGTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCC-ACTGTGAAT-TTG--G-TTACTTAG-CG-TAATGCTT-TC---GCCA-TCAA--AGCT---C--AG--GAGA--TTCCA-CTCTT--AGCTCCTG--GG----TTT-C---TGA--GTTAGTG--TG---GATACCATCGTTCTC-GTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA---TAAGAT-GTAACATCCATTG-GT---ACATCAAGAGCGTTTAATAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTc
gi|4 : tTGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-A-GCTAAGTT-TACTC-TGCATAATAT-TTAATA--
gi|5 : attgggaaaaactacaatatacaactgaattaaaaacgtggcaaaattactaaaacaaagattttgcatgtactataaaattgcaaaatgaatgaaataaaattgagatactgatatttcgttttatacattggaattgtaaatcatgtttttatgcagaattatcaaagatgaatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatttacaataatccttttagcaaaacttgaaggctaaaggaagatgaatgcccccccccccctcccgcacacacacattatgcaacatgaaaataacacacactattTGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-A-GCT-AGTT-AACTC-TGCAT-ATAT-TTAAT
gi|6 : aaatacgaattgggaaaaactacaatatacaactgattaaaaacgtggcaaaatttactaaaacaaagattttgcatgtatctataaaattgcaaaatgaatgaaataaaattgagatactgtatatttcgttttatacttggattgtaaatcatgtttttaatgcgattatcaaaagtgatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatgttaaataatcgttttagcaatactgaagtctaaaggaagatgaatgcccccccccctccgcacacacacattaatgcaactgaaaataacaacacactattTAATCAAATTATCAGTTT-TGTGTGGAAGTT-AA-GAAAAACAT----AGAA-GTTA-TACAAT--AATTCTTAAAATCCAAACAATGTGC--ATAT-AAA--TATTA-T-CG-TAAAGGTATA-TCAAGCTCGTGTACTTTATACAA-GCTATGTT-TACTC-TGCATGCTAT-TTAATA--
gi|7 : aagattgtgaaaactagaatacacaattgaatttaaaacgatacaaaattaccaaaacagaaacgtcactatagaattgtaaaaacgaatgaaataaattgagatactgagttcgtcttaacatgtatacattggaactgtaaatcatgctttagtacagatttaacaattaataagttattttcaaatctaacgagagaagattcaaaaagaaaagatctttacatgatcttttttagcagatacttgaaggctaaggaaggtgaaagtctccatacattatgtaccataaaaataacacgcacaataatAAAAAAAGCTTTACAA-GTCG-GACAAT--GATTATTAAAGACCAAACAATGTGC--ATAT-TAA--C------------------TA-TCAGCCTCTTGTACGTTATGC-ATTTTAACTT-TTCTC-CGTGTGATAT-TT--TG--AA--T-ATAATTCAAATG-AGGTTC-GCTTAATGAT-GTCTA-ATG--CAATATTC-AAAATACCCA-AAC------CCGCTATTCCTAAAGATACCAACACAT--TAA---GCTTGCATACAC-AT-GTACTAC-A--TACCCGCC-GTTCC--TGAATATCCT-GACACAGTAAG-CCGGTA-CTTGCTATTTTCG---TCGTCAATTTGAAAT-TTG--GAATAGAGAG-CG-TATCCAGTCTC---ACCA-GCAA--AGCT---C--AT--CAAA--T-CCA-CCCTT--AGTTCCTG--GG---ATGT-C---TGC--GTTAAATAATG---GATTGCATCGTTTCCTGTA--TATA-A-A--------AAAG---A-ATATT------GGTGCA-TGAAA---AATAGA--ATGAAGC-GTA-CATTCGTT
gi|8 : aaagttt--TAC-A--TACCTACT-GTTCC--TGTATAGCTC-GACACAGTAAG-CCGGTA-TTTACT
gi|8 : TTCCTGTATAGCTCGACACAG--TAA---GCCGGTATTTAC-TA-------C-A--TACCTGCT-GTTCC--TGTGTATCCT-CCCACGGTTAG-CCGATA-CTGGTTGCTTTCG---TTTTCAATTTTGAAC-TCG--GAGTAATGAG-CA-TGCGCCGTCTG---GCCA-TCAA--AACTTTCC--AG--G-----T-GTA-CTCGT--AACTCCTG--AT---TGTT-T---TTA--GTCAAAGCGTG---GATTGCATCGTTTCCTGTA--TAGA-A-AGTGAT---AGAAAGGA-ATATTAATGTC--------GGAG---A--AAA--ATGAGGTGGTA--ATCCAGTG-GC---GGATCTAGACAGTTTA-acatacctgctgttcctgtgtatcctcccacggttagccgatactggttgctttcgttttcaattttgaactcggagtaatgagcatgcgccgtctggccatcaaaactttccaggtgtactcgtaactcctgattgtttttagtcaaagcgtggattgcatcgtttcctgtatagaaagtgatagaaaggaatattaatgtcggagaaaaatgaggtggtaatccagtggcggatctagacagttta
gi|9 : tacatacctactg--TAC-ACTTACCCACC-AATCC--TGAGAATCCC-GACACAGTGAG-GTTCTA-TTTACTTTCCTCG---CCCCCTACATCAAATGTTG--TA-TACCGGG-CA-TG---CTTCTCACTGCCA-TCAAGCAGTT---TGAAG--AAAA--T-CCA-A------AGTTCCTG--GT---TTTT-CA--TACTTGTCAAGGCACT---GATCGCATCATTTCCTGTT--TTAC-------AT-----AA---A-ACATT--TATCGATGAATTAGAAGCCA--AAA--CTGA
Alignments
lowQualScore : 33333 1111 111 11 111 1 22 11 1 11 1 1 11111 111 22222 1111 11111111 22222222 1111 2222222 111111 111 1 111 2 4444444 11 222 1 1 1
lowQualScore : 6 6 11111 2222 5 5 77 4 1 6 77 5 77 111 5 7 1 5 1 0 5 5 1 5 5 8 5 99 33 3 777 0 22 22 0 77 3 0 33 0 44444 6 1 1 99 111 22 3 5 33333 3 44 3 44 3 1 3 0 1 3 3 22 777 1 6 999 4 99 0 22 4 4 6 777 4 55 8888888888 55 3 1 3 4 0000 33333333 3 11111111 555 666 1 0000 444 4 555 888 888 5 2222222 3 6 111111 222 8 8 0 777 3 0 3333333 88 333 7 3 3 7 3
lowQualScore : . . ..... .... . . .. . . . .. . .. ... . . . . . . . . . . . . . .. .. . ... . .. .. . .. . . .. . ..... . . . .. ... .. . . ..... . .. . .. . . . . . . . .. ... . . ... . .. . .. . . . ... . .. .......... .. . . . . .... ........ . ........ ... ... . .... ... . ... ... ... . ....... . . ...... ... . . . ... . . ....... .. ... . . . . .
lowQualScore : 7 7 88888 1111 7 7 99 3 0 6 99 7 99 666 7 9 9 7 3 6 7 7 7 7 7 9 7 22 88 2 555 0 88 00 0 00 2 0 22 0 00000 5 0 0 22 777 77 9 7 00000 1 22 1 22 8 9 1 8 3 1 3 00 000 6 4 888 0 55 7 66 0 0 4 000 0 55 8888888888 00 6 0 6 1 1111 77777777 6 22222222 888 444 0 3333 777 0 999 888 888 0 7777777 0 7 888888 333 0 0 0 555 2 0 3333333 33 333 3 3 3 3 3
consensus : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-GTTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
Reference ( family-4245 ) : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-GTTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
gi|1 : ATCAGTTTGTTTGTGGAAGTT-AAAGAAAAACAT----AGAAGCTTAGTACAATTAAAATCTTAAAATCCAAACAA-ATGCTGACATATAAAACATGA-TTCGCTAAAGGTATACTCAAACTCATGTACTTTATAC-AGC--AATTTATACTCTTGCATGCTATGTTAATATTAAGCTAATCAT---ATTGAAATTTCTATTTTGGGACAAATTT-ATGGCCGATATCTAAAAACATATG-TACCAATCACAGCCAATGCAAAATATCCTGATACAAGTTAACCCGC-CGTATTTACTTACGT--TACAA--TA-CCGCCTGTTCC--TGGA-ATTCC-CTCGCAGTAAGCCTTATATTTTGCTTGTCTCGACTTTCTCAACTCTGAAT-TCGT-AAGTACTTAGCCGCTAAGCCTTTTC---GCCAGGCAA--AGCT---C--AGGCGAGA--T-CCAGCTCATTAAACTCTTG--CGCTTATTT-C---TGCAGGTTA---AGTGCGTGATAACATCGTTTCCTGCTTATAGCAA-AGAGATAAGAAAG---A-ATATT-------GTGCA-TGAAC---A--AAAGCAAAAGAT-GTA-CATTCATTGCGTGAAACA--AAGAGCGTTTATTAAAAAAAATGCTAATCATTTAAACCTTC-CCGTTGCTTTGAATATTCTTTG------ACATGTATTATTT
gi|10 : ttg--TAC-A--TACTTGCA-GGTCC--TTTAAATCCC-GATACAGTGAG-CTTGTA-CTTGTTCTTTTCA---CTGTCGACACGGAAG-GTG--GAGTAAGTCG-CG-TAGGATTTCTC---GCAA-TCAA--AACT---C--AA--AAGC--T-CAA-TCCGA--AGCATTTG--TC---CCTT-G---TTC--GTCAAAAAATG---AATTGCGTCATTTCCTGCT--TAGC-ATA---AT---GAAA---ACATAT
gi|11 : aacaca--TAC-A--TACTTGCA-GTTCC--TTCAAACCCC-GACACAGTGAG-CTTGTA-TTTGTTTTTTTCA---TTGTCGACACGGAAT-GTG--GAGTAAGTCC-CG-TAGGAAACCTG---ACAA-TTAG--TTCT---G--AG--AAGC--T-CAA-CTCGA--AGCATTTG--TG---CCTT-C---TTC--GTCAAAGAATG---AATTGCGTCATTTCCTGTT--TAAC-A-
gi|12 : gcac--TAC-A--CACCCGCC-GTTCC--TGAATAACCC-GTTACAATGAG-CTTGTA-TCCACGGGACTCG---TCCCCGAC-ACGAA--ATGATGAATACATAG-CA-TAGGCATCCTC---GCAA-CC-----GCT---C------GAAACTT-CAA-CGCGT--AGCTTATGATTG---GTTT-CG--TTT--GTCAAAGAATG---GATGACATCATTTCCTG----TA---A-AGAGGA---AAGA---A-Ataatgaaaacata
gi|13 : acaAC-C--TACCTGCT-GTACCACTG--TAGCCC-GACGCCATCAA-CTTATA-CTTGCTATTCTCA---TCGCCAACAACAAAT-CTG--GAGTATTTGG-CA-TAACCCTTTTC---TCCA-GTGA--ATCT---T--TG--CAAA--T-TAA-TACGG--AGTTGCTG--TG---TTTTACCA-TTG--GTTAACAAGTG---GATGATATCATTACCTaca
gi|14 : TTTCTGAGTATCCCGATACAG--CAA---GCTTTGGTTTAC-TA-------C-A--TATCAGCT-GTTCA--TGAACATCTC-GATACAGTAAG-CCGGTA-aaatgtaagtttaaagacat
gi|15 : g--T-CGA-CCCTG--AGTACCTG--GG---ACTT-CATCTCC--GTCAAATCATG---GATTGCGTCATTTCCTG-----AGA-A-AGAAAc
gi|16 : TTTAC-TA-------C-A--CACCCGCT-GTTCC--TGAATATCCA-CACACAGTCAG-atgcacgtga
gi|2 : TGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATAATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-CTTTTGGGAT-GTTTT-GTGA-CGATATCT-AAAATATTTG-TACGCATCACCGCCATTGCTCAATACCCTGATATAG--TAA---ACTAGTATTAAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCCCACTGTGAAT-TTG--GAGTACTTAG-CG-TAAGCCCTTTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CCA-CTCTT--AGCTCCTG--GG---GTTT-C---TGA--GTTAAGTGGTG---GATACCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA--ATAAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTtagctattt
gi|3 : TGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-AGCT-A-GTT-AACTC-TGCAT-ATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC--TTTTGGGAT-GTTTTTGTGA-CGATA-CT-AAAATATTTGATACGCAT-ACCGC-ATTGCTCAATACCCTGATATAG--TAA---ACTAGTATT-AC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCCCGTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCC-ACTGTGAAT-TTG--G-TTACTTAG-CG-TAATGCTT-TC---GCCA-TCAA--AGCT---C--AG--GAGA--TTCCA-CTCTT--AGCTCCTG--GG----TTT-C---TGA--GTTAGTG--TG---GATACCATCGTTCTC-GTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA---TAAGAT-GTAACATCCATTG-GT---ACATCAAGAGCGTTTAATAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTc
gi|4 : tTGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATAATAT-TTAATA--
gi|5 : attgggaaaaactacaatatacaactgaattaaaaacgtggcaaaattactaaaacaaagattttgcatgtactataaaattgcaaaatgaatgaaataaaattgagatactgatatttcgttttatacattggaattgtaaatcatgtttttatgcagaattatcaaagatgaatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatttacaataatccttttagcaaaacttgaaggctaaaggaagatgaatgcccccccccccctcccgcacacacacattatgcaacatgaaaataacacacactattTGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-AGCT--AGTT-AACTC-TGCAT-ATAT-TTAAT
gi|6 : aaatacgaattgggaaaaactacaatatacaactgattaaaaacgtggcaaaatttactaaaacaaagattttgcatgtatctataaaattgcaaaatgaatgaaataaaattgagatactgtatatttcgttttatacttggattgtaaatcatgtttttaatgcgattatcaaaagtgatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatgttaaataatcgttttagcaatactgaagtctaaaggaagatgaatgcccccccccctccgcacacacacattaatgcaactgaaaataacaacacactattTAATCAAATTATCAGTTT-TGTGTGGAAGTT-AA-GAAAAACAT----AGAA-GTTA-TACAAT--AATTCTTAAAATCCAAACAATGTGC--ATAT-AAA--TATTA-T-CG-TAAAGGTATA-TCAAGCTCGTGTACTTTATACAAGCT-ATGTT-TACTC-TGCATGCTAT-TTAATA--
gi|7 : aagattgtgaaaactagaatacacaattgaatttaaaacgatacaaaattaccaaaacagaaacgtcactatagaattgtaaaaacgaatgaaataaattgagatactgagttcgtcttaacatgtatacattggaactgtaaatcatgctttagtacagatttaacaattaataagttattttcaaatctaacgagagaagattcaaaaagaaaagatctttacatgatcttttttagcagatacttgaaggctaaggaaggtgaaagtctccatacattatgtaccataaaaataacacgcacaataatAAAAAAAGCTTTACAA-GTCG-GACAAT--GATTATTAAAGACCAAACAATGTGC--ATAT-TAA--C------------------TA-TCAGCCTCTTGTACGTTATGC-ATTTTAACTT-TTCTC-CGTGTGATAT-TT--TG--AA--TA-TAATTCAAATG-AGGTTC-GCTTAATGAT-GTCTA-ATG--CAATATTC-AAAATACCCA-AAC------CCGCTATTCCTAAAGATACCAACACAT--TAA---GCTTGCATACAC-AT-GTACTAC-A--TACCCGCC-GTTCC--TGAATATCCT-GACACAGTAAG-CCGGTA-CTTGCTATTTTCG---TCGTCAATTTGAAAT-TTG--GAATAGAGAG-CG-TATCCAGTCTC---ACCA-GCAA--AGCT---C--AT--CAAA--T-CCA-CCCTT--AGTTCCTG--GG---ATGT-C---TGC--GTTAAATAATG---GATTGCATCGTTTCCTGTA--TATA-A-A--------AAAG---A-ATATT------GGTGCA-TGAAA---AATAGA--ATGAAGC-GTA-CATTCGTT
gi|8 : aaagttt--TAC-A--TACCTACT-GTTCC--TGTATAGCTC-GACACAGTAAG-CCGGTA-TTTACT
gi|8 : TTCCTGTATAGCTCGACACAG--TAA---GCCGGTATTTAC-TA-------C-A--TACCTGCT-GTTCC--TGTGTATCCT-CCCACGGTTAG-CCGATA-CTGGTTGCTTTCG---TTTTCAATTTTGAAC-TCG--GAGTAATGAG-CA-TGCGCCGTCTG---GCCA-TCAA--AACTTTCC--AG--G-----T-GTA-CTCGT--AACTCCTG--AT---TGTT-T---TTA--GTCAAAGCGTG---GATTGCATCGTTTCCTGTA--TAGA-A-AGTGAT---AGAAAGGA-ATATTAATGTC--------GGAG---A--AAA--ATGAGGTGGTA--ATCCAGTG-GC---GGATCTAGACAGTTTA-acatacctgctgttcctgtgtatcctcccacggttagccgatactggttgctttcgttttcaattttgaactcggagtaatgagcatgcgccgtctggccatcaaaactttccaggtgtactcgtaactcctgattgtttttagtcaaagcgtggattgcatcgtttcctgtatagaaagtgatagaaaggaatattaatgtcggagaaaaatgaggtggtaatccagtggcggatctagacagttta
gi|9 : tacatacctactg--TAC-ACTTACCCACC-AATCC--TGAGAATCCC-GACACAGTGAG-GTTCTA-TTTACTTTCCTCG---CCCCCTACATCAAATGTTG--TA-TACCGGG-CA-TG---CTTCTCACTGCCA-TCAAGCAGTT---TGAAG--AAAA--T-CCA-A------AGTTCCTG--GT---TTTT-CA--TACTTGTCAAGGCACT---GATCGCATCATTTCCTGTT--TTAC-------AT-----AA---A-ACATT--TATCGATGAATTAGAAGCCA--AAA--CTGA
Alignments
lowQualScore : 33333 1111 111 11 111 1 22 11 1 11 1 1 11111 111 22222 1111 11111111 22222222 1111 2222222 111111 111 1 111 2 4444444 11 222 1 1 1
lowQualScore : 6 6 11111 2222 5 5 77 4 1 6 77 5 77 111 5 7 1 5 1 0 5 5 1 5 5 8 5 99 33 3 777 0 22 22 0 77 3 0 33 0 44444 6 1 1 99 111 22 3 5 33333 3 44 3 44 3 1 3 0 1 3 3 22 777 1 6 999 4 99 0 22 4 4 6 777 4 55 8888888888 55 3 1 3 4 0000 33333333 3 11111111 555 666 1 0000 444 4 555 888 888 5 2222222 3 6 111111 222 8 8 0 777 3 0 3333333 88 333 7 3 3 7 3
lowQualScore : . . ..... .... . . .. . . . .. . .. ... . . . . . . . . . . . . . .. .. . ... . .. .. . .. . . .. . ..... . . . .. ... .. . . ..... . .. . .. . . . . . . . .. ... . . ... . .. . .. . . . ... . .. .......... .. . . . . .... ........ . ........ ... ... . .... ... . ... ... ... . ....... . . ...... ... . . . ... . . ....... .. ... . . . . .
lowQualScore : 7 7 88888 1111 7 7 99 3 0 6 99 7 99 666 7 9 9 7 3 6 7 7 7 7 7 9 7 22 88 2 555 0 88 00 0 00 2 0 22 0 00000 5 0 0 22 777 77 9 7 00000 1 22 1 22 8 9 1 8 3 1 3 00 000 6 4 888 0 55 7 66 0 0 4 000 0 55 8888888888 00 6 0 6 1 1111 77777777 6 22222222 888 444 0 3333 777 0 999 888 888 0 7777777 0 7 888888 333 0 0 0 555 2 0 3333333 33 333 3 3 3 3 3
consensus : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-GTTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
Reference ( family-4245 ) : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-GTTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
gi|1 : ATCAGTTTGTTTGTGGAAGTT-AAAGAAAAACAT----AGAAGCTTAGTACAATTAAAATCTTAAAATCCAAACAA-ATGCTGACATATAAAACATGA-TTCGCTAAAGGTATACTCAAACTCATGTACTTTATAC-AGC--AATTTATACTCTTGCATGCTATGTTAATATTAAGCTAATCAT---ATTGAAATTTCTATTTTGGGACAAATTT-ATGGCCGATATCTAAAAACATATG-TACCAATCACAGCCAATGCAAAATATCCTGATACAAGTTAACCCGC-CGTATTTACTTACGT--TACAA--TA-CCGCCTGTTCC--TGGA-ATTCC-CTCGCAGTAAGCCTTATATTTTGCTTGTCTCGACTTTCTCAACTCTGAAT-TCGT-AAGTACTTAGCCGCTAAGCCTTTTC---GCCAGGCAA--AGCT---C--AGGCGAGA--T-CCAGCTCATTAAACTCTTG--CGCTTATTT-C---TGCAGGTTA---AGTGCGTGATAACATCGTTTCCTGCTTATAGCAA-AGAGATAAGAAAG---A-ATATT-------GTGCA-TGAAC---A--AAAGCAAAAGAT-GTA-CATTCATTGCGTGAAACA--AAGAGCGTTTATTAAAAAAAATGCTAATCATTTAAACCTTC-CCGTTGCTTTGAATATTCTTTG------ACATGTATTATTT
gi|10 : ttg--TAC-A--TACTTGCA-GGTCC--TTTAAATCCC-GATACAGTGAG-CTTGTA-CTTGTTCTTTTCA---CTGTCGACACGGAAG-GTG--GAGTAAGTCG-CG-TAGGATTTCTC---GCAA-TCAA--AACT---C--AA--AAGC--T-CAA-TCCGA--AGCATTTG--TC---CCTT-G---TTC--GTCAAAAAATG---AATTGCGTCATTTCCTGCT--TAGC-ATA---AT---GAAA---ACATAT
gi|11 : aacaca--TAC-A--TACTTGCA-GTTCC--TTCAAACCCC-GACACAGTGAG-CTTGTA-TTTGTTTTTTTCA---TTGTCGACACGGAAT-GTG--GAGTAAGTCC-CG-TAGGAAACCTG---ACAA-TTAG--TTCT---G--AG--AAGC--T-CAA-CTCGA--AGCATTTG--TG---CCTT-C---TTC--GTCAAAGAATG---AATTGCGTCATTTCCTGTT--TAAC-A-
gi|12 : gcac--TAC-A--CACCCGCC-GTTCC--TGAATAACCC-GTTACAATGAG-CTTGTA-TCCACGGGACTCG---TCCCCGAC-ACGAA--ATGATGAATACATAG-CA-TAGGCATCCTC---GCAA-CC-----GCT---C------GAAACTT-CAA-CGCGT--AGCTTATGATTG---GTTT-CG--TTT--GTCAAAGAATG---GATGACATCATTTCCTG----TA---A-AGAGGA---AAGA---A-Ataatgaaaacata
gi|13 : acaAC-C--TACCTGCT-GTACCACTG--TAGCCC-GACGCCATCAA-CTTATA-CTTGCTATTCTCA---TCGCCAACAACAAAT-CTG--GAGTATTTGG-CA-TAACCCTTTTC---TCCA-GTGA--ATCT---T--TG--CAAA--T-TAA-TACGG--AGTTGCTG--TG---TTTTACCA-TTG--GTTAACAAGTG---GATGATATCATTACCTaca
gi|14 : TTTCTGAGTATCCCGATACAG--CAA---GCTTTGGTTTAC-TA-------C-A--TATCAGCT-GTTCA--TGAACATCTC-GATACAGTAAG-CCGGTA-aaatgtaagtttaaagacat
gi|15 : g--T-CGA-CCCTG--AGTACCTG--GG---ACTT-CATCTCC--GTCAAATCATG---GATTGCGTCATTTCCTG-----AGA-A-AGAAAc
gi|16 : TTTAC-TA-------C-A--CACCCGCT-GTTCC--TGAATATCCA-CACACAGTCAG-atgcacgtga
gi|2 : TGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATAATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-CTTTTGGGAT-GTTTT-GTGA-CGATATCT-AAAATATTTG-TACGCATCACCGCCATTGCTCAATACCCTGATATAG--TAA---ACTAGTATTAAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCCCACTGTGAAT-TTG--GAGTACTTAG-CG-TAAGCCCTTTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CCA-CTCTT--AGCTCCTG--GG---GTTT-C---TGA--GTTAAGTGGTG---GATACCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA--ATAAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTtagctattt
gi|3 : TGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-AGCT-A-GTT-AACTC-TGCAT-ATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC--TTTTGGGAT-GTTTTTGTGA-CGATA-CT-AAAATATTTGATACGCAT-ACCGC-ATTGCTCAATACCCTGATATAG--TAA---ACTAGTATT-AC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCCCGTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCC-ACTGTGAAT-TTG--G-TTACTTAG-CG-TAATGCTT-TC---GCCA-TCAA--AGCT---C--AG--GAGA--TTCCA-CTCTT--AGCTCCTG--GG----TTT-C---TGA--GTTAGTG--TG---GATACCATCGTTCTC-GTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA---TAAGAT-GTAACATCCATTG-GT---ACATCAAGAGCGTTTAATAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTc
gi|4 : tTGATCAAATTATGAGTTT-TGTGTTGACGTTTA--GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATAATAT-TTAATA--
gi|5 : attgggaaaaactacaatatacaactgaattaaaaacgtggcaaaattactaaaacaaagattttgcatgtactataaaattgcaaaatgaatgaaataaaattgagatactgatatttcgttttatacattggaattgtaaatcatgtttttatgcagaattatcaaagatgaatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatttacaataatccttttagcaaaacttgaaggctaaaggaagatgaatgcccccccccccctcccgcacacacacattatgcaacatgaaaataacacacactattTGATCAAATTATGAGTTT-TGTGTG-ACGTT-G----AAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACT-CG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTC-AGCT--AGTT-AACTC-TGCAT-ATAT-TTAAT
gi|6 : aaatacgaattgggaaaaactacaatatacaactgattaaaaacgtggcaaaatttactaaaacaaagattttgcatgtatctataaaattgcaaaatgaatgaaataaaattgagatactgtatatttcgttttatacttggattgtaaatcatgtttttaatgcgattatcaaaagtgatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatgttaaataatcgttttagcaatactgaagtctaaaggaagatgaatgcccccccccctccgcacacacacattaatgcaactgaaaataacaacacactattTAATCAAATTATCAGTTT-TGTGTGGAAGTT-AA-GAAAAACAT----AGAA-GTTA-TACAAT--AATTCTTAAAATCCAAACAATGTGC--ATAT-AAA--TATTA-T-CG-TAAAGGTATA-TCAAGCTCGTGTACTTTATACAAGCT-ATGTT-TACTC-TGCATGCTAT-TTAATA--
gi|7 : aagattgtgaaaactagaatacacaattgaatttaaaacgatacaaaattaccaaaacagaaacgtcactatagaattgtaaaaacgaatgaaataaattgagatactgagttcgtcttaacatgtatacattggaactgtaaatcatgctttagtacagatttaacaattaataagttattttcaaatctaacgagagaagattcaaaaagaaaagatctttacatgatcttttttagcagatacttgaaggctaaggaaggtgaaagtctccatacattatgtaccataaaaataacacgcacaataatAAAAAAAGCTTTACAA-GTCG-GACAAT--GATTATTAAAGACCAAACAATGTGC--ATAT-TAA--C------------------TA-TCAGCCTCTTGTACGTTATGC-ATTTTAACTT-TTCTC-CGTGTGATAT-TT--TG--AA--TA-TAATTCAAATG-AGGTTC-GCTTAATGAT-GTCTA-ATG--CAATATTC-AAAATACCCA-AAC------CCGCTATTCCTAAAGATACCAACACAT--TAA---GCTTGCATACAC-AT-GTACTAC-A--TACCCGCC-GTTCC--TGAATATCCT-GACACAGTAAG-CCGGTA-CTTGCTATTTTCG---TCGTCAATTTGAAAT-TTG--GAATAGAGAG-CG-TATCCAGTCTC---ACCA-GCAA--AGCT---C--AT--CAAA--T-CCA-CCCTT--AGTTCCTG--GG---ATGT-C---TGC--GTTAAATAATG---GATTGCATCGTTTCCTGTA--TATA-A-A--------AAAG---A-ATATT------GGTGCA-TGAAA---AATAGA--ATGAAGC-GTA-CATTCGTT
gi|8 : aaagttt--TAC-A--TACCTACT-GTTCC--TGTATAGCTC-GACACAGTAAG-CCGGTA-TTTACT
gi|8 : TTCCTGTATAGCTCGACACAG--TAA---GCCGGTATTTAC-TA-------C-A--TACCTGCT-GTTCC--TGTGTATCCT-CCCACGGTTAG-CCGATA-CTGGTTGCTTTCG---TTTTCAATTTTGAAC-TCG--GAGTAATGAG-CA-TGCGCCGTCTG---GCCA-TCAA--AACTTTCC--AG--G-----T-GTA-CTCGT--AACTCCTG--AT---TGTT-T---TTA--GTCAAAGCGTG---GATTGCATCGTTTCCTGTA--TAGA-A-AGTGAT---AGAAAGGA-ATATTAATGTC--------GGAG---A--AAA--ATGAGGTGGTA--ATCCAGTG-GC---GGATCTAGACAGTTTA-acatacctgctgttcctgtgtatcctcccacggttagccgatactggttgctttcgttttcaattttgaactcggagtaatgagcatgcgccgtctggccatcaaaactttccaggtgtactcgtaactcctgattgtttttagtcaaagcgtggattgcatcgtttcctgtatagaaagtgatagaaaggaatattaatgtcggagaaaaatgaggtggtaatccagtggcggatctagacagttta
gi|9 : tacatacctactg--TAC-ACTTACCCACC-AATCC--TGAGAATCCC-GACACAGTGAG-GTTCTA-TTTACTTTCCTCG---CCCCCTACATCAAATGTTG--TA-TACCGGG-CA-TG---CTTCTCACTGCCA-TCAAGCAGTT---TGAAG--AAAA--T-CCA-A------AGTTCCTG--GT---TTTT-CA--TACTTGTCAAGGCACT---GATCGCATCATTTCCTGTT--TTAC-------AT-----AA---A-ACATT--TATCGATGAATTAGAAGCCA--AAA--CTGA
blockSeqs : . G TAG CTTT . . . C T G . . . CT . G T . A A T A . . A . . . A TCA . C T T A T . TT A GCATC C T G . . TT T . GTAC . CT . AC T A C G . . CT . G G ACG G AT AG . . G ACT . GC TTCCAG CT T A . C GA ATTGG A ATCTCC AAA . T CT GC T GAG . AGG C AATGTC A T GCCA A G A . . T A . . . T . . A .
blockSeqs : . G TAG . . . . C T G . . . CT . G T . A . . A . . A . . . A . . G T . A T . TT . GCAT T G C . . TA T . GT . . . . C A . G . . TT . G G ACG . . AG . . G . . . TGAAG . . A . T GA TCC . ATACTT AGA . T TT AC . GAA . . . TGTTG A . AAT A . . . . T . . . . T . . A .
blockSeqs : . G AAG . . . . C T G . . . T . G T . A . . A . . G . . . . . . . T . . . . CC . . . G C . . TA A . GT . . . . A T . G . . GG . C G AAC . . CA . . G . . . CAA . . A . G GT TGC . CATTG AGA . G TT GA . GAG . . . TGTTG C . A A . . . . T .
blockSeqs : . . G . . . . C T G . . . T . . T . A . . T . . G . . C A . . TT C . . . . . . A T . C . . AT . G A TGT . . TT . . A . . . GAG . . A . A GG TGT . GTTT CAA . G TT GC . GAG . . . TATCG A . A C . .
blockSeqs : . . G . . . . . A . . . . T . . A . C . . A . . . . . C G . . CG T . . . . . . A C . A . . TG . C C TGT . . CT . . A . . . TTG . . G . C TG GGA . TTC ATC . T TA GC . GTG . . . G . . A .
blockSeqs : . . . . . A . . . . . . . . . C . . . . . . . . . . . . . . A T . C . . TG . C A TTG . . CT . . A . . . CAG . . C . T TT GGG . TTC GTG . A TA TA . . . . .
blockSeqs : . . . . A T . A . . AT . G A TTT . . GA . . T . . . CAG . . C . T TT GGA . TGA ATA . A TT GA . . . . .
blockSeqs : . . . . A T . A . . GC . T T ATC . . AT . . C . . . CAT . . C . C TT ATT . TGA AGC . T . AC . .
blockSeqs : . . . . T T . A . . TT . C . AC . . CC . . . . . . C . . T . T GT GTT . TGC GGC . T . . .
blockSeqs : . . . . T T . A . . . . C . . . GG . TTA TG . C
blockSeqs : . . . . A T . T . .
blockSeqs : . . . . . A . G .
blockSeqCons : TAG** ** ** ** CT* ** ** *** TN GT*** *** ** CAG******* GN** GGN***** TNN***** AGA *** TT** GC* *** TGTCG** A**
originalCons : TGATCAAATTATGAGTTT-TGTGTGGACGTT-A--GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-T-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-GTTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCGT--AGCTCCTG--NG---NTTT-C---TNC--GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
finalCons : TGATCAAATTATGAGTTT-TGTGTGGACGTTTAG--AAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGACT-CG-TAAAAGTTTA-TAAAACTCTTGTACTTTATAC-AGCT-AAGTT-TACTC-TGCATGATAT-TTAATA--AA--TAATAGT---ATTG-GATTTC-GTTTTGGGAC-GTTTT-GTGA-CGATATCT-AAAATATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TAGT---TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCTCAG-------GAGA--T-CNA-CTCGN--AGCTCCTGGGN-----TTT-CTNN-----GTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATTTGTCG--GTGAA-TGGAA---A--AAAA--TGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
Alignments
lowQualScore : 111 1111 1 11 111 1 22 1 1 1 1 1 11111 111 22222 11111111 222 1111 2222222 111111 111 1 111 2 4444444 11 222 1 1 1
lowQualScore : 6 6 666 2222 5 5 77 5 1 6 77 5 77 7 5 7 1 5 1 0 5 5 1 5 5 8 5 99 33 3 777 0 22 2 0 0 7 0 3 0 33 0 44444 6 1 1 99 111 22 3 5 33333 3 44 3 44 3 1 3 0 1 3 3 22 777 1 6 999 4 99 0 22 4 4 6 777 4 55 8888888888 55 3 1 3 1 8888 44444444 3 111 7777 555 666 1 0000 444 4 555 888 888 5 2222222 3 6 111111 222 8 8 0 777 3 0 3333333 88 333 7 3 3 7 3
lowQualScore : . . ... .... . . .. . . . .. . .. . . . . . . . . . . . . . . .. .. . ... . .. . . . . . . . .. . ..... . . . .. ... .. . . ..... . .. . .. . . . . . . . .. ... . . ... . .. . .. . . . ... . .. .......... .. . . . . .... ........ . ... .... ... ... . .... ... . ... ... ... . ....... . . ...... ... . . . ... . . ....... .. ... . . . . .
lowQualScore : 7 7 000 1111 7 7 99 3 0 6 99 7 99 3 7 9 9 7 3 6 7 7 7 7 7 9 7 22 88 2 555 0 88 0 0 0 0 0 2 0 22 0 00000 5 0 0 22 777 77 9 7 00000 1 22 1 22 8 9 1 8 3 1 3 00 000 6 4 888 0 55 7 66 0 0 4 000 0 55 8888888888 00 6 0 6 8 8888 77777777 6 444 0000 888 444 0 3333 777 0 999 888 888 0 7777777 0 7 888888 333 0 0 0 555 2 0 3333333 33 333 3 3 3 3 3
consensus : TGATCAAATTATGAGTTT-TGTGTGGACGTTTA-GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGA-TCG-TAAAAGTTTA-TAAAACTCTTGTACTTTATACA-GCT-AAGTT-TACTCT-GCATGATAT-TTAATA--AA--TAATAGT---ATTGGA-TTTC-GTTTTGGGACGT-TTT-GTGAC-GATATCTAAAA-TATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCG--NAGCTCCTGG--G---NTTT-C---T--TNGTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
Reference ( family-4245 ) : TGATCAAATTATGAGTTT-TGTGTGGACGTTTA-GAAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACCCANACAATGTGC--ACAT-TGA--TATGACTCG-TAAAAGTTTA-TAAAACTCTTGTACTTTATACA-GCT-AAGTT-TACTCT-GCATGATAT-TTAATA--AA--TAATAGT---ATTGGA-TTTC-GTTTTGGGACGT-TTT-GTGAC-GATATCTAAAA-TATTCG-TACGCATCACCGCCATTNCTNAATATCCCGATACAG--TAA---GCTNGTATTTAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GACACAGTAAG-CTTGTA-TTTGCTNNTCTCG---TCCCCGACNNCGAAT-TTG--GAGTACNTAG-CG-TAGGCCTTCTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CNA-CTCG--NAGCTCCTGG--G---NTTT-C---T--NNGTCAAAGAATG---GATNGCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATATT--TGTCGGTGAA-TGGAA---A--AAA--ATGAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTT
gi|1 : ATCAGTTTGTTTGTGGAAGTTAAAGAAAAACAT----AGAAGCTTAGTACAATTAAAATCTTAAAATCCAAACAA-ATGCTGACATATAAAACATGATTCGCTAAAGGTATACTCAAACTCATGTACTTTATACA-GC--AATTTATACTCTTGCATGCTATGTTAATATTAAGCTAATCAT---ATTGAAATTTCTATTTTGGGACAAATTT-ATGGCCGATATCTAAAAACATATG-TACCAATCACAGCCAATGCAAAATATCCTGATACAAGTTAACCCGC-CGTATTTACTTACGT--TACAA--TA-CCGCCTGTTCC--TGGA-ATTCC-CTCGCAGTAAGCCTTATATTTTGCTTGTCTCGACTTTCTCAACTCTGAAT-TCGT-AAGTACTTAGCCGCTAAGCCTTTTC---GCCAGGCAA--AGCT---C--AGGCGAGA--T-CCAGCTCATTAAACTCTTGC--GCTTATTT-C---TGCAGGTTA---AGTGCGTGATAACATCGTTTCCTGCTTATAGCAA-AGAGATAAGAAAG---A-ATATT-------GTGCA-TGAAC---A--AAAGCAAAAGAT-GTA-CATTCATTGCGTGAAACA--AAGAGCGTTTATTAAAAAAAATGCTAATCATTTAAACCTTC-CCGTTGCTTTGAATATTCTTTG------ACATGTATTATTT
gi|10 : ttg--TAC-A--TACTTGCA-GGTCC--TTTAAATCCC-GATACAGTGAG-CTTGTA-CTTGTTCTTTTCA---CTGTCGACACGGAAG-GTG--GAGTAAGTCG-CG-TAGGATTTCTC---GCAA-TCAA--AACT---C--AA--AAGC--T-CAA-TCCG--AAGCATTTGT--C---CCTT-G---T--TCGTCAAAAAATG---AATTGCGTCATTTCCTGCT--TAGC-ATA---AT---GAAA---ACATAT
gi|11 : aacaca--TAC-A--TACTTGCA-GTTCC--TTCAAACCCC-GACACAGTGAG-CTTGTA-TTTGTTTTTTTCA---TTGTCGACACGGAAT-GTG--GAGTAAGTCC-CG-TAGGAAACCTG---ACAA-TTAG--TTCT---G--AG--AAGC--T-CAA-CTCG--AAGCATTTGT--G---CCTT-C---T--TCGTCAAAGAATG---AATTGCGTCATTTCCTGTT--TAAC-A-
gi|12 : gcac--TAC-A--CACCCGCC-GTTCC--TGAATAACCC-GTTACAATGAG-CTTGTA-TCCACGGGACTCG---TCCCCGAC-ACGAA--ATGATGAATACATAG-CA-TAGGCATCCTC---GCAA-CC-----GCT---C------GAAACTT-CAA-CGCG--TAGCTTATGATTG---GTTT-CG--T--TTGTCAAAGAATG---GATGACATCATTTCCTG----TA---A-AGAGGA---AAGA---A-Ataatgaaaacata
gi|13 : acaAC-C--TACCTGCT-GTACCACTG--TAGCCC-GACGCCATCAA-CTTATA-CTTGCTATTCTCA---TCGCCAACAACAAAT-CTG--GAGTATTTGG-CA-TAACCCTTTTC---TCCA-GTGA--ATCT---T--TG--CAAA--T-TAA-TACG--GAGTTGCTGT--G---TTTTACCA-T--TGGTTAACAAGTG---GATGATATCATTACCTaca
gi|14 : TTTCTGAGTATCCCGATACAG--CAA---GCTTTGGTTTAC-TA-------C-A--TATCAGCT-GTTCA--TGAACATCTC-GATACAGTAAG-CCGGTA-aaatgtaagtttaaagacat
gi|15 : g--T-CGA-CCCT--GAGTACCTGG--G---ACTT-CATCT--CCGTCAAATCATG---GATTGCGTCATTTCCTG-----AGA-A-AGAAAc
gi|16 : TTTAC-TA-------C-A--CACCCGCT-GTTCC--TGAATATCCA-CACACAGTCAG-atgcacgtga
gi|2 : TGATCAAATTATGAGTTT-TGTGTTGACGTTTA-GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-TCG-TAAAAGTTTA-TAAAACTCTTGTACTTTATACA-GCT-AAGTT-TACTCT-GCATAATAT-TTAATA--AA--TAATAGT---ATTGGA-TTTC-CTTTTGGGATGT-TTT-GTGAC-GATATCTAAAA-TATTTG-TACGCATCACCGCCATTGCTCAATACCCTGATATAG--TAA---ACTAGTATTAAC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCC-GTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCCCACTGTGAAT-TTG--GAGTACTTAG-CG-TAAGCCCTTTC---GCCA-TCAA--AGCT---C--AG--GAGA--T-CCA-CTCT--TAGCTCCTGG--G---GTTT-C---T--GAGTTAAGTGGTG---GATACCATCGTTTCCTGTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA--ATAAGAT-GTA-CATCCATTG-GT---ACATCAAGAGCGTTTA-TAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTtagctattt
gi|3 : TGATCAAATTATGAGTTT-TGTGTG-ACGTT----GAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAACC-ATACAAT-TGC--ACAT-TGA--TATGACTCG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTCA-GCT-A-GTT-AACTCT-GCAT-ATAT-TTAATA--AA--TAATAGT---ATTGGA-TTTC--TTTTGGGATGT-TTTTGTGAC-GATA-CTAAAA-TATTTGATACGCAT-ACCGC-ATTGCTCAATACCCTGATATAG--TAA---ACTAGTATT-AC-TA-GT--TAC-A--TACCCGCC-GTTCC--TGAATATCCCCGTCACATTAAG-CTTATA-TTTGCTTGTCTCG---TCCCC-ACTGTGAAT-TTG--G-TTACTTAG-CG-TAATGCTT-TC---GCCA-TCAA--AGCT---C--AG--GAGA--TTCCA-CTCT--TAGCTCCTGG--G----TTT-C---T--GAGTTAGTG--TG---GATACCATCGTTCTC-GTT--TAGC-A-AGAGAT---AAAA---A-ATCTT--TGTTGGTGAA-TGGAA---A--AAA---TAAGAT-GTAACATCCATTG-GT---ACATCAAGAGCGTTTAATAA-------GCT--TCAC---AACCCTCTCCGTTG-TTTGAATA-TCTTTGACACATACATGTA-TATTTc
gi|4 : tTGATCAAATTATGAGTTT-TGTGTTGACGTTTA-GAAAAACAG----AGAA-CTTA-TACAAT--GGTTCTTAAAACCCATACAATGTGC--ACAT-TGA--TATGA-TCG-TAAAAGTTTA-TAAAACTCTTGTACTTTATACA-GCT-AAGTT-TACTCT-GCATAATAT-TTAATA--
gi|5 : attgggaaaaactacaatatacaactgaattaaaaacgtggcaaaattactaaaacaaagattttgcatgtactataaaattgcaaaatgaatgaaataaaattgagatactgatatttcgttttatacattggaattgtaaatcatgtttttatgcagaattatcaaagatgaatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatttacaataatccttttagcaaaacttgaaggctaaaggaagatgaatgcccccccccccctcccgcacacacacattatgcaacatgaaaataacacacactattTGATCAAATTATGAGTTT-TGTGTG-ACGTT----GAAAACAG----AGAA-CTCA-TACAAT--GGTTCTTAAAA-CCATACAAT-TGC--ACAT-TGA--TATGACTCG-TAAAA-TTTA-TAAAACTCTTGTACTTTATTCA-GCT--AGTT-AACTCT-GCAT-ATAT-TTAAT
gi|6 : aaatacgaattgggaaaaactacaatatacaactgattaaaaacgtggcaaaatttactaaaacaaagattttgcatgtatctataaaattgcaaaatgaatgaaataaaattgagatactgtatatttcgttttatacttggattgtaaatcatgtttttaatgcgattatcaaaagtgatttgagtaatttctgaaatgtaatgaagagaagattaaaaaaaatatgttaaataatcgttttagcaatactgaagtctaaaggaagatgaatgcccccccccctccgcacacacacattaatgcaactgaaaataacaacacactattTAATCAAATTATCAGTTT-TGTGTGGAAGTTAA-GAAAAACAT----AGAA-GTTA-TACAAT--AATTCTTAAAATCCAAACAATGTGC--ATAT-AAA--TATTA-TCG-TAAAGGTATA-TCAAGCTCGTGTACTTTATACAAGCT-ATGTT-TACTCT-GCATGCTAT-TTAATA--
gi|7 : aagattgtgaaaactagaatacacaattgaatttaaaacgatacaaaattaccaaaacagaaacgtcactatagaattgtaaaaacgaatgaaataaattgagatactgagttcgtcttaacatgtatacattggaactgtaaatcatgctttagtacagatttaacaattaataagttattttcaaatctaacgagagaagattcaaaaagaaaagatctttacatgatcttttttagcagatacttgaaggctaaggaaggtgaaagtctccatacattatgtaccataaaaataacacgcacaataatGTTTA-AAAAAA--GCTTTACAA-GTCG-GACAAT--GATTATTAAAGACCAAACAATGTGC--ATAT-TAA--C-----------------TA-TCAGCCTCTTGTACGTTATGCA-TTTTAACTT-TTCTCC-GTGTGATAT-TT--TG--AA--TA-TAATTCAAATGAG-GTTC-GCTTAATGATGT-CTA-ATG-C-AATATTCAAAA-TACCCA-AAC------CCGCTATTCCTAAAGATACCAACACAT--TAA---GCTTGCATACAC-AT-GTACTAC-A--TACCCGCC-GTTCC--TGAATATCCT-GACACAGTAAG-CCGGTA-CTTGCTATTTTCG---TCGTCAATTTGAAAT-TTG--GAATAGAGAG-CG-TATCCAGTCTC---ACCA-GCAA--AGCT---C--AT--CAAA--T-CCA-CCCT--TAGTTCCTGG--G---ATGT-C---T--GCGTTAAATAATG---GATTGCATCGTTTCCTGTA--TATA-A-A--------AAAG---A-ATATT------GGTGCA-TGAAA---AATAGA--ATGAAGC-GTA-CATTCGTT
gi|8 : aaa--TAC-A--TACCTACT-GTTCC--TGTATAGCTC-GACACAGTAAG-CCGGTA-TTTACT
gi|8 : TTCCTGTATAGCTCGACACAG--TAA---GCCGGTATTTAC-TA-------C-A--TACCTGCT-GTTCC--TGTGTATCCT-CCCACGGTTAG-CCGATA-CTGGTTGCTTTCG---TTTTCAATTTTGAAC-TCG--GAGTAATGAG-CA-TGCGCCGTCTG---GCCA-TCAA--AACTTTCC--AG--G-----T-GTA-CTCG--TAACTCCTGA--T---TGTT-T---T--TAGTCAAAGCGTG---GATTGCATCGTTTCCTGTA--TAGA-A-AGTGAT---AGAAAGGA-ATATTAATGTC--------GGAG---A--AAA--ATGAGGTGGTA--ATCCAGTG-GC---GGATCTAGACAGTTTA-acatacctgctgttcctgtgtatcctcccacggttagccgatactggttgctttcgttttcaattttgaactcggagtaatgagcatgcgccgtctggccatcaaaactttccaggtgtactcgtaactcctgattgtttttagtcaaagcgtggattgcatcgtttcctgtatagaaagtgatagaaaggaatattaatgtcggagaaaaatgaggtggtaatccagtggcggatctagacagttta
gi|9 : tacatacctactg--TAC-ACTTACCCACC-AATCC--TGAGAATCCC-GACACAGTGAG-GTTCTA-TTTACTTTCCTCG---CCCCCTACATCAAATGTTG--TA-TACCGGG-CA-TG---CTTCTCACTGCCA-TCAAGCAGTT---TGAAG--AAAA--T-CCA-------AAGTTCCTGG--T---TTTT-CATAC--TTGTCAAGGCACT---GATCGCATCATTTCCTGTT--TTAC-------AT-----AA---A-ACATT--TATCGATGAATTAGAAGCCA--AAA--CTGA