lowQualScore : 11111111
lowQualScore : 11 555 1 22 22 22 2222 11111 11111 222222 111111 11111 22 666666666666666666666666666666666666666666666 2222222222222222 11 4 111 1 222 1 6666666 11111111 4444444444444444444444444 222222 1111 222 1 11 222 11 3333333 4444444444 1111 22222 3333 444444444444 11 8888888888888888888888 11 1 1 1 111 1 111 444444 2222222 5555555555555555555555 1
lowQualScore : 6 99 666 0 5 11 5 66 55 5 5 2222 44444 77 11111 0 77 111111 5 666666 44444 5 5 11 222222222222222222222222222222222222222222222 6 6666666666666666 3 88 8 99 8 3 0 111 3 0 777 8 0 55 3 6666666 77777777 7 7 7777777777777777777777777 888888 5555 222 1 6 11 5 111 11 0 99 6 0000000 5 9999999999 0 7777 1 8 88888 2222 111111111111 8 66 0000000000000000000000 33 0 0 0 777 0 4 7 888 7 444444 0000000 4444444444444444444444 3 6
lowQualScore : . .. ... . . .. . .. .. . . .... ..... .. ..... . .. ...... . ...... ..... . . .. ............................................. . ................ . .. . .. . . . ... . . ... . . .. . ....... ........ . . ......................... ...... .... ... . . .. . ... .. . .. . ....... . .......... . .... . . ..... .... ............ . .. ...................... .. . . . ... . . . ... . ...... ....... ...................... . .
lowQualScore : 0 00 333 0 0 99 0 99 00 7 7 1111 33333 99 11111 3 99 444444 7 444444 33333 7 7 44 888888888888888888888888888888888888888888888 0 2222222222222222 8 88 0 22 0 2 0 888 2 0 555 8 0 88 2 0000000 77777777 3 3 3333333333333333333333333 888888 2222 000 0 0 00 0 666 00 8 22 7 2222222 0 6666666666 8 0000 4 0 00000 6666 000000000000 0 66 8888888888888888888888 88 0 0 0 555 0 0 3 000 3 000000 3333333 7777777777777777777777 3 0
consensus : ATTCGG--TTTTGGACAC--AAAGCTGCTA-G-GGG-TGCA-TTT-ATTTTTTATTT-GTTC-AAT-TTTTG--TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG--GTTTTTTT-T------TTAT-----TTGTT-TGTTT-TTA-TGTT-T--ACTA-T-------CT-ATC---TTATT----TA-----TT-ATTATT---TNTNTATATTTA-TAATAAAATAGA-TAATA-GATTTTA-NTTTA-TATTATTAAAATGTATCTGA--TATGTTA-AAG--TAATCATTTT-CTTTGAAGGAAAAGG----TGGGGGGGGG-----GT-TCAAACATTTAAAAAA-A---ATATCACTGC----GACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTTC-TATTTCC--CACACTGGGAGCC--TTTG--AATTTCCCCCTT--T-CCTTCTC-CAA---GCGAGTC----C-----ACTGTG----GCT-CATGG---CCACTGGTTTCAG-AACTA--TCT-------C-ATGCTTGGGCAGG----TTT-----GTTTAACGTT--TG-C-CTTTGTT-TTAG-T-G-AGTANATTTAATACAAT-CGATTATAAT-TT---CTATTATACC-TAC-GTCAATT---TTC-TGT---ATATGTAT-TATTATT
Reference ( gi|2 ) : ATTTGG--TTTTGGACACTTGAAGCTGCTA-G-GG--TGCA-TT--ATTTTTTATT--GTTC-AAT-TTT-G--TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG--GTTTTTTT-T------TTAT-----TTGTT-TGTTT-TT--TGTT-T--ACTA-T-------CT-ATC---TTATT----CA-----T--ATTATT---TATGTATATCTA-TAATAAAATAGA-TAATA-GATTTTA-TTTTA-TATTATTAAAATG-ATCTGA--TATGTTA-AA---TAATCATTTT-CTTTGAAGGAAAAGGCGTGTGGGGGGGGGTTAGGGTATCAAACATTTAAAAAA-A---ATATCACTCG----GACAGTTTACCTA------CTGC--TTCC-C-CTTCTTTTCTTATTTCC--CACACTGGGAGCA--TTTG--AATTTCCCCCTT--T-CCTTCTC-C-A---GCGAGTC----CA----ACTGTG----GCT-CAT-G---CCACTGGTTTCAGAAACTA--T-T-------C-ATGCTT-GGCACG----TTT-----ACTTAA--TT--TG-C-CTTTGTT-TTAG-T-G-AGTAAATTTAATACAATTCGATTATAAT-TA---CTATTATAAC-TAT-GTC-ATA---TTC-TG----ATATATAT-TGTTATT
gi|1 : ATTCGGCGTTTTGGACAC--AAAGCTGTTA-G-GG--TGCA-TTT-ATTTGTTATTT-GTTC-AATGTTT-G--TGTG-----TTT--T-GGAAAATTTG-TTTTG--T-TGTTTTTTTTTT-T------TTAT-----TTATT-TTTTT-TA--TGTTAT--A--A-T-------TT-CAC---TTATTATTACT-----T--ATTTTT---TATGTAT---TT-TAAT-AAATAGATTAATATCATTTTA--ATTA-TATTATT-AAATGTATCTGA--TATGTTA-AAGTTTAATCATTTT-TCTTGAAGGAAAAG------GGGGGGGGGC----GT-TCAAACATTT--AAAA-A---ATATTACTCACTGCGACA--TTACCTATATGGCTTGC--TCCCTC-CTTCTTTTC-TATTTCC--CACAGT-GGAGCC--TTGG--AATTTCCCC--T--T-C--TTTC-C-A---TTGACTC----C-----ACTGTG----GGT-CAT-G---TCACTGGTTC----AACTA--T-TCCATTGAC-ATG----GGCAGG----TTT-----ACACCT--TC--TGCC-CTTTGTTCTTAG-TAG-AGTACA-TTAATACTATGTGATTATAAT-TCTTTCTATTATACC-TAC-GTC-ACAATTTTC-TGTATAATATGTAT-
gi|16 : aATTCGGA-TTTTGGACACAT--AGCTGCTAGG-GG--TGCATTT--ATTTTTTAacatgtatt
gi|4 : aGG--TTTTGGACAC--AAAGCTGCTA-G-GGGTTGCA-TTTTATTTTTTATT--GTTCCAAT-TTT-T--CGTG-----TTT--TGTGTAAATTTGTTTT-G--T-GG--TTTTTTGT-T------TTAT-----TTGTT-TGTTT-TTA-TG-T-T--AC-A-T-------CT-ATC---TTATT----CATTATTT--ATTATTTCCTATGTAATTTTATTAATAAAATAG--TAATG-GATTTTATTTTTATTATTATTAGAATGTATCTGAATTA-GTTA-AA---TAATATTTTT-CTTTG-AGGAAAGGGTGGGTGGGGGGGGG
gi|10 : aattcgGG--TTTTGGACACT--AAGCTGCAA-G-GGG-TGC---T---TTTTTTATTT-ATTC-AAT-TTTTG--TGTG-----TTT--T-TTATATTTTGTTTTTG--T--T--GTTTTGTT-T------TTATTATTATTATT-TGTTTGTT--TGTT-T--gaaa
gi|17 : aattcgGG--TTTTGGACAC--AACGCTGCTAGG-GG--TGCA-TT--ttattgttact
gi|12 : attcgACAC--AAAGCTGCTA-G-GGG-TGCA-TTT-ATTTATTATTT-GTTC-AAT-TTTTG--TGTG-----TTT--T-TGAAAGTTTGTATTTG--T-TG-----TTTTT-T------TTAT-----TTGTT-TGTTT-TT--t
gi|5 : AGCTGCTA-G-GGG-TGCA-TTT-ATTTTTTATT----TC-AAT-TTT-TACTGTGGTTTTTTT--T-T----ATTTGTTTTTTATT-GG--GTTTCTTT-T------TTGT-----TAGTT-TGTTT-TTATTGTT-TTTACTG-TTATTATTCT-ATT---TTTTT----TT-----TTCATTATT---TTTTAAAATTTG-TAATAAAATAGA-TAATA-GAGTTTA-ATTTA-TATTATCAAAATGTATCTGA--attgt
gi|6 : GCTGCTA-GAGG--TGCA-TTT-ATTTTTTATTTAGT-C-AAT-TTTTG--TGTG-----TTT--T-TTAAAATTTATTTTTG--TTGG--GTTTTTTT-TAAATTATTAT-----TTGTT-CGTTT-TTATTGTT----ACTA-T-------TTTATCGTTTTAAT----TA-----TT-ATTATT---TTTTT-TATTTA-TAACAAAATAGA-TAATA-GATTTTA-TTTTA-TATTAT
gi|3 : TTTCAAT--GTTT-TTT-TTT-G--TGTG-----TTTGTT-TG----TTTGTTTTTT--TTGG--GTTTTTTTGT------TTGG-----CTTTTATATTT-AT--TGTT----ACTAAT-------GT-ATT---GTGTT----TA-----T--ATT-TT---T---TATATTCA-TAATGAAATAGA-TAATA-GATTTTA-ATTTA-CATTATTAAAATGTATCTG----ATGTTATAA---TAAT-ATTTT-TTTT-AAGG--AAGG-----GGGAGGGGG---------CAAACA--TAAAAAA-------ATCACAGC----GACAG-ATACCTC------CTGCCATGCC-CTCTCCTTCTCATATTTCC--AACACTTGGGCCC--TTTG--AA-TTCCTCCTT--T-CCTTCTC-CAA---GTGAGTC----CATTGTAC-ATG----GTT-CATGG---CCACTGGTTTCAG-AGTTA--T-T-------CAATGCTTGGGTAGGATGATCTGGATGGTTTAACGTT--TG-C-CTTTGTT-TTAG-T-GCAGTAGATTTAATACAATTCAATTATAATGTT---TTATTATATC-TAC-GGCAATT---TTC-TGT---AT-TATAT-
gi|13 : gGA--TATGTTA-AAA--TAATCATTTTTCTTTGAGGGAAAA----T-TGGGGGGAGG----GGT-TCAAACATTTAAAAAATATATATATCACTGC----GACAG-TTACCTA------CTGC--CTgtaaaaatgaatt
gi|14 : ------CTGC--GTCC-T-ATCTTTTTATTGTTTCC--CACACTGGCAGCT--CATG--AATTTCCTCCTT--T-CCTTATC-CAA---GCGA
gi|11 : ttccTATTTCC--CACACTGGGAGCC--TTTG--AATGTTCCCCTT--T-CCTTCTCGA-A---GGGAGTC----C-----ACTGCG----GTT-CATGG---CCACTGGTTTCA-AAACTA--TCC-------C-ATGCTT-GG
gi|8 : TTTCCACCACGCTGGGCATACCTTTGTTAATTTCCCCCTTGGTGCCTTCGCTC-AACTGCGA-TCTCGGCT----ATTGTGATGCGCTTCAT-GTGGCCACTGGTTTTCATAACTATTT-T-------C-ATGCTG-GGCAGG----TTT-------TTAACGTTCCTG-CGTTTTGTT-CTAG-T-G-gtagggtggttt
gi|7 : CCTT--T-CCTTCTC-CAA---GCGAGTC----C-----ATTGTG----GCC-CATGG---CCACGGATTTCAG-AACTA--TCC-------C-ATGCTTGGGTATG----GTG-----GTTTAACTTT--TG-C-CTTTGTT-TTAGAA-G-AGTAAATTTAATACAA---GAC--TAAT-TT---CTATTATACCTTACGGTCAATT---TTCGTG----TTAT-TATGTATTATT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GAAATACAGGTATTACATATCTTATATCTTTTTCAGATTAGTTTCTGCTATAACTACTTTTTGGGGGAGGGGGAGGGGGCAAATAAAATAAATTTGAAAGTGAAATTTACAGAGATTCCTGCACATCCCCTTTCACTTCACAT
Unaligned ( gi|15 ): TAGTTCAGTAGATTCAATGCAAATCAATTCTGATTTTCTATTATACCTACGTCAATTTTC
Alignments
lowQualScore : 33 11111 11 22222 22222222222222 222222222222 111 1111 111 11111 11 222 22222222 33333333 444444 1 11 222222 11 111 222 1111 1111 1111 111 33333333333333 11 111 333 111 11 444444444
lowQualScore : 55 77 1 4 4 66 5 5 22222 66 5 666 11 5 00000 5 77777777777777 999 5 77 999999999999 111 4444 6 111 66666 6 77 1 4 99 88 1 6 6 77 6 0 0 5 11 777 5 8 0 11111111 8 55555555 3 444444 0 22 333333 11 444 000 99 2 666 99 77 5 5 1 77 2222 6 4444 4444 6 555 6 77 6 77 99 3 11111111111111 5 11 8 8 8 222 6 1 0 222 11 444 8 8 8 8 11 0 8 999999999
lowQualScore : .. .. . . . .. . . ..... .. . ... .. . ..... . .............. ... . .. ............ ... .... . ... ..... . .. . . .. .. . . . .. . . . . .. ... . . . ........ . ........ . ...... . .. ...... .. ... ... .. . ... .. .. . . . .. .... . .... .... . ... . .. . .. .. . .............. . .. . . . ... . . . ... .. ... . . . . .. . . .........
lowQualScore : 88 99 1 4 4 77 7 0 55555 99 0 111 99 0 00000 0 88888888888888 333 7 99 999999999999 777 2222 7 777 77777 7 77 0 2 22 33 7 7 7 77 7 8 8 6 00 444 0 0 8 44444444 0 88888888 2 222222 0 55 000000 00 000 000 22 5 888 22 99 7 7 4 99 1111 7 2222 2222 7 888 7 77 7 33 22 5 77777777777777 0 00 0 0 0 222 7 0 8 888 44 000 0 0 0 0 00 8 0 222222222
consensus : ATTCGGG-TTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TTATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTA----TT-AT---TA-----T-TT-TTNTATA--TTTA-TAATAAAATAGA-TAATA-GATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAA--TAATCATTTT-CTTTGAAGGAAAAGGCG---GGGGG-GGGGT-------TCAAACATTTAAAAAATA---ATA-TCACTGCGACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTT-C-TATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCC-ACTG----TG----GCT-CATG--GCCACTGG-TTTCAG-AACTA-TTCCAT--GCTTGGGCAGG----TTT-----GTTTAACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATT-CGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TGT--T---A-TATGTATTGTTATT
Reference ( family-4244 ) : ATTCGG--TTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TTATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTA----TT-AT---TA-----T-TT-NTNTATA--TTTA-TAATAAAATAGA-TAATA-GATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAG--TAATCATTTT-CTTTGAAGGAAAAGGTG---GGGGG-GGGGT-------TCAAACATTTAAAAAA-A---ATA-TCACTGCGACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTT-C-TATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCC-ACTG----TG----GCT-CATG--GCCACTGG-TTTCAG-AACTA-TCTCAT--GCTTGGGCAGG----TTT-----GTTTAACGTT--TG-C-CTTTGTT-TTAG-T-G-AGTANATTTAATACAA-T-CGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG---T---A-TATGTATTATTATT
gi|1 : ATTCGGCGTTTTGGACAC--AAAGCTGTTAGGG-T-GCATTT-ATTTGTTATTTGTTC-AATGTTTG-TGTG-----TTT--T-GGAAAATTTG-TTTTG--T-TGTT--TTTTTT-TT-------T------TTATTTATTT-TTTTTAT-GTTAT--A--------------ATT---TCACTTA----TT-AT---TACTTATT-TT-TTATGTA--TTT--TAAT-AAATAGATTAATATCATTTTA-A-TTA-TATTATT-AAATGTATCTGATAT--GTTAAAGTTTAATCATTTT-TCTTGAAGGAAAAGG-G---GGGGG-GGCGT-------TCAAACATTTAAAAAATA---TTACTCACTGCGACA--TTACCTATATGGCTTGC--TCCCTC-CTTCTTTT-C-TATTTCC--CACAGT-GG-A-GCCTTGG--AATTTCCCC--T--T-CTTTCC----A--TTGA----CTCC-ACTG----TG----GGT-CAT---GTCACTGG-TTC----AACTA-TTCCATTGACATGGGCAGG----TTT-----A--CACCTTC--TGCC-CTTTGTTCTTAG-TAG-AGTACA-TTAATACTA-TGTGATTATAATTCT-TT-CTATTATACC-TAC-GTCACAATTTTC-TG---TATAA-TATGTAT
gi|10 : aATTCGGG-TTTTGGACAC--TAAGCTGCAAGGGGT-GC---T--TTTTTTATTTATTC-AATTTTTG-TGTG-----TTT--T-TTATATTTTGTTTTTG--T-TGTTTTGTTTTTATTATTATTAT------TTGTTTGTTTGTTTTTAT-TGT-T--ACTacatgtatt
gi|11 : a-TATTTCC--CACACTGGG-A-GCCTTTG--AATGTTCCCCTT--T-CCTTCTC-GAA--GGGA----GTCC-ACTG----CG----GTT-CATG--GCCACTGG-TTTCAA-AACTA-TCCCAT--GCTTGGGTAGG----GTG-----GTTT
gi|12 : ACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTATTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAGTTTGTATTTG--T-TG-------TTT-TT-------T------TTATTTGTTTGTTTTTAT-
gi|13 : GATAT--GTTAAAA--TAATCATTTTTCTTTGAGGGAAAAT-TG---GGGGGAGGGGT-------TCAAACATTTAAAAAATATATATA-TCACTGCGACAG-TTACCTA------CTGC--CTtgt
gi|14 : ------CTGC--GTCC-T-ATCTTTTTAT-TGTTTCC--CACACTGGC-A-GCTCATG--AATTTCCTCCTT--T-CCTTATC-CAA--GCGA----
gi|15 : ttcc-AGTAGATTCAATGCAAAT-CAATTCTGA---T-TTTCTATTATACC-TAC-GT--CAATTTTC-
gi|16 : tagttcATTCGGA-TTTTGGACAC--ATAGCTGCTAGGGGT-GCATTT-ATTTTTTA
gi|17 : aATTCGGG-TTTTGGACAC--AACGCTGCTAGGGGT-GCATTT-
gi|2 : ATTTGG--TTTTGGACACTTGAAGCTGCTAGGG-T-GCATT--ATTTTTTATT-GTTC-AATTTT-G-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TTATTTGTTTGTTTTT-T-GTT-T--ACTA-T-------CTATC---TTATTCA-----T-AT---TA-----T-TT-ATGTATA--TCTA-TAATAAAATAGA-TAATA-GATTTTA-TTTTA-TATTATTAAAATG-ATCTGATAT--GTTAAA---TAATCATTTT-CTTTGAAGGAAAAGGCGTGTGGGGG-GGGGTTAGGGTATCAAACATTTAAAAAA-A---ATA-TCACTCGGACAGTTTACCTA------CTGC--TTCC-C-CTTCTTTT-CTTATTTCC--CACACTGGG-A-GCATTTG--AATTTCCCCCTT--T-CCTTCTC-C-A--GCGA----GTCCAACTG----TG----GCT-CAT---GCCACTGG-TTTCAGAAACTA-T-TCAT--GCTT-GGCACG----TTT-----ACTTAA--TT--TG-C-CTTTGTT-TTAG-T-G-AGTAAATTTAATACAATT-CGATTATAA---T-TA-CTATTATAAC-TAT-GT--C-ATATTC-TG-------A-TATATATTGTTATT
gi|3 : TTTTTG-TGTG-----TTTGTT-TG----TTTGTTTTTT--TTGG----GTTTTT-TT----------------GTTTG---GCTTTTAT-ATT-T--ATTG-T--------TA-C---TAATGTA----TT-GTGTTTA-----TATT-TTTTATA--TTCA-TAATGAAATAGA-TAATA-GATTTTA-ATTTA-CATTATTAAAATGTATCTG--AT--GTTATAA--TAAT-ATTTT-TTTT-AAGGAAG----G---GGGAG-GGGG---------CAAACA--TAAAAAA-------A-TCACAGCGACAG-ATACCTC------CTGCCATGCC-CTCTCCTTCT-CATATTTCC--AACACTTGG-G-CCCTTTG--AA-TTCCTCCTT--T-CCTTCTC-CAA--GTGA----GTCC-ATTGTACATG----GTT-CATG--GCCACTGG-TTTCAG-AGTTA-TTCAAT--GCTTGGGTAGGATGATCTGGATGGTTTAACGTT--TG-C-CTTTGTT-TTAG-T-GCAGTAGATTTAATACAATT-CAATTATAA---TGTT-TTATTATATC-TAC-GG--CAATTTTC-TGTATT---A-TATGTA
gi|4 : gtttcaatgttttATTCGGG-TTTTGGACAC--AAAGCTGCTAGGGGTTGCATTTTATTTTTTATT-GTTCCAATTTTT--CGTG-----TTT--TGTGTAAATTTGTTTT-G--T-GG----TTTTTT-GT-------T------TTATTTGTTTGTTTTTAT-G-T-T--AC-A-T-------CTATC---TTATTCATTATTT-AT---TA-----T-TTCCTATGTAATTTTATTAATAAAATAG--TAATG-GATTTTATTTTTATTATTATTAGAATGTATCTGA-ATTAGTTAAA---TAATATTTTT-CTTTG-AGGAAAGGGTG---GGTGG-GGGGaaaatgaatt
gi|5 : aAGCTGCTAGGGGT-GCATTT-ATTTTTTATTT---C-AATTTTTACTGTGGTTTTTTT--T-T----ATTTGTTTTTTATT-GG----GTTTCT-TT-------T------TTGTTAGTTTGTTTTTATTGTT-TTTACTG-TTATTATTCTATT---TTTTTTT----TTCAT---TA-----T-TT-TTTAAAA--TTTG-TAATAAAATAGA-TAATA-GAGTTTA-ATTTA-TATTATCAAAATGTATCTGAggggaaa
gi|6 : GCTGCTAGAGGT-GCATTT-ATTTTTTATTTAGTC-AATTTTTG-TGTG-----TTT--T-TTAAAATTTATTTTTGT-T-GG----GTTTTT-TT-------TAAATTATTATTTGTTCGTTTTTAT-TGT-T--ACTATT-------TTATCGTTTTAATTA----TT-AT---TA-----T-TT-TTTT-TA--TTTA-TAACAAAATAGA-TAATA-GATTTTA-TTTTA-TATTAT
gi|7 : CCTT--T-CCTTCTC-CAA--GCGA----GTCC-ATTG----TG----GCC-CATG--GCCACGGA-TTTCAG-AACTA-TCCCAT--GCTTGGGTATG----GTG-----GTTTAACTTT--TG-C-CTTTGTT-TTAGAA-G-AGTAAATTTAATACAA----GAC--TAA---T-TT-CTATTATACCTTACGGT--CAATTTTCGTGT--T---ATTATGTATTATT
gi|8 : TTTCCACCACGCTGGGCATACCTTTGTTAATTTCCCCCTTGGTGCCTTCGCTCAACTGCGATCTCGGCT-ATTG----TGATGCGCTTCATGTGGCCACTGGTTTTCAT-AACTATTTTCAT--GC-TGGGCAGG----TT-------TTTAACGTTCCTG-CGTTTTGTT-CTAG-T-G-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATACAGGTATTACATATCTTATATCTTTTTCAGATTAGTTTCTGCTATAACTACTTTTTGGGGGAGGGGGAGGGGGCAAATAAAATAAATTTGAAAGTGAAATTTACAGAGATTCCTGCACATCCCCTTTCACTTCACAT
Alignments
lowQualScore : 11111 11 22222 22222222222222 222222222222 111 111 22222222 1111 11 111 22222222 333333333 333333 1 1 222222 11 111 111 1111 1111 1111 33333333333333 11 111 111 11 33333333
lowQualScore : 6 77 1 4 4 66 5 5 22222 66 5 666 11 5 00000 5 77777777777777 999 5 77 999999999999 111 666 111 33333333 1 1 4444 88 1 6 6 77 6 0 0 5 11 0 444 5 8 0 11111111 222222222 3 333333 0 2 0 333333 11 444 222 8 99 2 666 99 77 5 5 77 2222 6 4444 4444 6 99 6 1 6 6 2 99 3 11111111111111 3 11 8 8 8 222 6 1 0 66 11 444 8 8 8 8 11 0 8 55555555
lowQualScore : . .. . . . .. . . ..... .. . ... .. . ..... . .............. ... . .. ............ ... ... ... ........ . . .... .. . . . .. . . . . .. . ... . . . ........ ......... . ...... . . . ...... .. ... ... . .. . ... .. .. . . .. .... . .... .... . .. . . . . . .. . .............. . .. . . . ... . . . .. .. ... . . . . .. . . ........
lowQualScore : 7 99 1 4 4 77 7 0 55555 99 0 111 99 0 00000 0 88888888888888 333 7 99 999999999999 777 888 777 55555555 0 7 2222 33 7 7 7 77 7 8 8 6 00 8 888 0 0 8 00000000 888888888 2 555555 0 5 0 000000 00 000 000 0 22 5 888 22 99 7 7 99 1111 7 2222 2222 7 22 7 0 7 7 5 22 5 77777777777777 8 00 0 0 0 222 7 4 8 66 44 000 0 0 0 0 00 8 0 00000000
consensus : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TTATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGA-TAATA-GATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAA--TAATCATTTT-CTTTGAAGGAAAAGG-G---GGGGGGGGGTT-------CAAACATTTAAAAAATA---ATA-TCACTGCGACAGTT-ACCTA------CTGC--TTCC-C-CTCCTTTT-C-T-ATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCCA-CTG----TG----GCT-CATG--GCCACTGG-TTTCAGAA-CTA-TTCCAT--GCTTGGGCAGG----TTT-----GTTTAACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
Reference ( family-4244 ) : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TTATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGA-TAATA-GATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAA--TAATCATTTT-CTTTGAAGGAAAAGGCG---GGGGGGGGGTT-------CAAACATTTAAAAAATA---ATA-TCACTGCGACAGTT-ACCTA------CTGC--TTCC-C-CTCCTTTT-C-T-ATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCCA-CTG----TG----GCT-CATG--GCCACTGG-TTTCAGAA-CTA-TTCCAT--GCTTGGGCAGG----TTT-----GTTTAACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
gi|1 : ATTCGGCGTTTTGGACAC--AAAGCTGTTAGGG-T-GCATTT-ATTTGTTATTTGTTC-AATGTTTG-TGTG-----TTT--T-GGAAAATTTG-TTTTG--T-TGTT--TTTTTT-TT-------T------TTATTTATTT-TTTTTAT-GTTAT--A--------------ATT---TCACTTATT-A-T---TACTTATT--TTTTATGTA----TTT--TAAT-AAATAGATTAATATCATTTTA-A-TTA-TATTATT-AAATGTATCTGATAT--GTTAAAGTTTAATCATTTT-TCTTGAAGGAAAAGG-G---GGGGGGGCGTT-------CAAACATTTAAAAAATA---TTACTCACTGCGACA-TT-ACCTATATGGCTTGC--TCCCTC-CTTCTTTT-C-T-ATTTCC--CACAGT-GG-A-GCCTTGG--AATTTCCCC--T--T-CTTTCC----A--TTGA----CTCCA-CTG----TG----GGT-CAT---GTCACTGG-TTC---AA-CTA-TTCCATTGACATGGGCAGG----TTT-----A--CACCTTC--TGCC-CTTTGTTCTTAG-TAG-AGTACA-TTAATACTATGTGATTATAATTCT-TT-CTATTATACC-TAC-GTCACAATTTTC-TG--TATAA-TATGTAT
gi|10 : aATTCGG-GTTTTGGACAC--TAAGCTGCAAGGGGT-GC---T--TTTTTTATTTATTC-AATTTTTG-TGTG-----TTT--T-TTATATTTTGTTTTTG--T-TGTTTTGTTTTTATTATTATTAT------TTGTTTGTTTGTTTTTAT-TGT-T--ACTacatgtatt
gi|11 : a-T-ATTTCC--CACACTGGG-A-GCCTTTG--AATGTTCCCCTT--T-CCTTCTC-GAA--GGGA----GTCCA-CTG----CG----GTT-CATG--GCCACTGG-TTTCAAAA-CTA-TCCCAT--GCTTGGGTAGG----GTG-----GTTT
gi|12 : ACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTATTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAGTTTGTATTTG--T-TG-------TTT-TT-------T------TTATTTGTTTGTTTTTAT-
gi|13 : GATAT--GTTAAAA--TAATCATTTTTCTTTGAGGGAAAATTGG---GGGGAGGGGTT-------CAAACATTTAAAAAATATATATA-TCACTGCGACAGTT-ACCTA------CTGC--CTtgt
gi|14 : ------CTGC--GTCC-T-ATCTTTTTAT-T-GTTTCC--CACACTGGC-A-GCTCATG--AATTTCCTCCTT--T-CCTTATC-CAA--GCGA----
gi|15 : ttcc-AGTAGATTCAATGCAAATCAATTCTGA---T-TTTCTATTATACC-TAC-GT--CAATTTTC-
gi|16 : tagttcATTCGG-ATTTTGGACAC--ATAGCTGCTAGGGGT-GCATTT-ATTTTTTA
gi|17 : aATTCGG-GTTTTGGACAC--AACGCTGCTAGGGGT-GCATTT-
gi|2 : G-GTTTTGGACACTTGAAGCTGCTAGGG-T-GCATT--ATTTTTTATT-GTTC-AATTTT-G-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TTATTTGTTTGTTTTT-T-GTT-T--ACTA-T-------CTATC---TTATTCAT--A-T---TA-----T--TTATGTATA----TCTA-TAATAAAATAGA-TAATA-GATTTTA-TTTTA-TATTATTAAAATG-ATCTGATAT--GTTAAA---TAATCATTTT-CTTTGAAGGAAAAGGCGTGTGGGGGGGGGTTAGGGTATCAAACATTTAAAAAA-A---ATA-TCACTCGGACAGTTTACCTA------CTGC--TTCC-C-CTTCTTTT-C-TTATTTCC--CACACTGGG-A-GCATTTG--AATTTCCCCCTT--T-CCTTCTC-CA---GCGA----GTCCAACTG----TG----GCT-CATG---CCACTGG-TTTCAGAAACTA-TTC-AT--GCTTGG-CACG----TTT-----ACTTAA--TT--TG-C-CTTTGTT-TTAG-T-G-AGTAAATTTAATACAATTCGATTATAA---T-TA-CTATTATAAC-TAT-GT--C-ATATTC-TG------A-TATATATTGTTATT
gi|3 : atttTTTTTG-TGTG-----TTTGTT-TG----TTTGTTTTTT--TTGG----GTTTTT-TT----------------GTTTG---GCTTTTAT-ATT-T--ATTG-T--------TA-C---TAATGTATT-G-TGTTTA-----TA-TTTTTTATA----TTCA-TAATGAAATAGA-TAATA-GATTTTA-ATTTA-CATTATTAAAATGTATCTG--AT--GTTATAA--TAAT-ATTTT-TTTT-AAGGAAG----G---GGGAGGGGG---------CAAACA--TAAAAAA-------A-TCACAGCGACAGAT-ACCTC------CTGCCATGCC-CTCTCCTTCT-CAT-ATTTCC--AACACTTGG-G-CCCTTTG--AA-TTCCTCCTT--T-CCTTCTC-CAA--GTGA----GTCCA-TTGTACATG----GTT-CATG--GCCACTGG-TTTCAGAG-TTA-TTCAAT--GCTTGGGTAGGATGATCTGGATGGTTTAACGTT--TG-C-CTTTGTT-TTAG-T-GCAGTAGATTTAATACAATTCAATTATAA---TGTT-TTATTATATC-TAC-GG--CAATTTTC-TGTAT-T-A-TATGTA
gi|4 : gtttcaatgttttATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGTTGCATTTTATTTTTTATT-GTTCCAATTTTT--CGTG-----TTT--TGTGTAAATTTGTTTT-G--T-GG----TTTTTT-GT-------T------TTATTTGTTTGTTTTTAT-G-T-T--AC-A-T-------CTATC---TTATTCATT-ATT---TA-----TTATTTCCTATGTAATTTTATTAATAAAATAG--TAATG-GATTTTATTTTTATTATTATTAGAATGTATCTGA-ATTAGTT-AAA--TAATATTTTT-CTTTG-AGGAAAGGGTG---GGTGGGGGGaaaatgaatt
gi|5 : aAGCTGCTAGGGGT-GCATTT-ATTTTTTATTT---C-AATTTTTACTGTGGTTTTTTT--T-T----ATTTGTTTTTTATT-GG----GTTTCT-TT-------T------TTGTTAGTTTGTTTTTATTGTT-TTTACTG-TTATTATTCTATT---TTTTTTTTTCA-T---TA-----T--TTTTTAAAA----TTTG-TAATAAAATAGA-TAATA-GAGTTTA-ATTTA-TATTATCAAAATGTATCTGAggggaaa
gi|6 : GCTGCTAGAGGT-GCATTT-ATTTTTTATTTAGTC-AATTTTTG-TGTG-----TTT--T-TTAAAATTTATTTTTGT-T-GG----GTTTTT-TT-------TAAATTATTATTTGTTCGTTTTTAT-TGT-T--ACTATT-------TTATCGTTTTAATTATT-A-T---TA-----T--TTTTTT-TA----TTTA-TAACAAAATAGA-TAATA-GATTTTA-TTTTA-TATTAT
gi|7 : CCTT--T-CCTTCTC-CAA--GCGA----GTCCA-TTG----TG----GCC-CATG--GCCACGGA-TTTCAGAA-CTA-TCCCAT--GCTTGGGTATG----GTG-----GTTTAACTTT--TG-C-CTTTGTT-TTAGAA-G-AGTAAATTTAATACAA---GAC--TAA---T-TT-CTATTATACCTTACGGT--CAATTTTCGTG--T-T-ATTATGTATTATT
gi|8 : TTTCCACCACGCTGGGCATACCTTTGTTAATTTCCCCCTTGGTGCCTTCGCTCAACTGCGATCTCGGCTA-TTG----TGATGCGCTTCATGTGGCCACTGGTTTTCATAA-CTATTTTCAT--GC-TGGGCAGG----TT-------TTTAACGTTCCTG-CGTTTTGTT-CTAG-T-G-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATACAGGTATTACATATCTTATATCTTTTTCAGATTAGTTTCTGCTATAACTACTTTTTGGGGGAGGGGGAGGGGGCAAATAAAATAAATTTGAAAGTGAAATTTACAGAGATTCCTGCACATCCCCTTTCACTTCACAT
Alignments
lowQualScore : 11111 11 11111 22222222222222 222222222222 111 111 22222222 1111 11 1 11 333333333 3333333 333333 1 11 222222 11 111 222 1111 1111 1111 111 33333333333333 11 111 111 11 33333333
lowQualScore : 6 77 1 4 4 66 5 5 22222 66 5 666 3 11 5 33333 5 77777777777777 66 999 5 77 999999999999 111 666 111 33333333 1 1 4444 88 6 6 77 6 0 0 5 11 0 11 999 0 0 8 222222222 2222222 3 333333 0 22 333333 11 444 000 99 2 666 99 77 5 5 1 77 2222 6 4444 4444 6 555 6 77 6 1 99 3 11111111111111 3 11 8 8 8 222 6 1 0 66 11 444 8 8 8 8 11 0 8 55555555
lowQualScore : . .. . . . .. . . ..... .. . ... . .. . ..... . .............. .. ... . .. ............ ... ... ... ........ . . .... .. . . .. . . . . .. . .. ... . . . ......... ....... . ...... . .. ...... .. ... ... .. . ... .. .. . . . .. .... . .... .... . ... . .. . . .. . .............. . .. . . . ... . . . .. .. ... . . . . .. . . ........
lowQualScore : 7 99 1 4 4 77 7 0 55555 99 0 111 2 99 0 11111 0 88888888888888 99 333 7 99 999999999999 777 888 777 55555555 0 7 2222 33 7 7 77 7 8 8 6 00 6 00 222 8 8 0 000000000 5555555 2 555555 0 55 000000 00 000 000 22 5 888 22 99 7 7 4 99 1111 7 2222 2222 7 888 7 77 7 0 22 5 77777777777777 8 00 0 0 0 222 7 4 8 66 44 000 0 0 0 0 00 8 0 00000000
consensus : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TT--ATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGAT-AATAG-ATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAAT--AATCA-TTTTCTTTGAAGGAAAA-GG-----G---GGGGGGGGGT-------TCAAACATTTAAAAAATA---ATA-TCACTGCGACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTT-C-TATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCC-ACTG----TG----GCT-CATG--GCCACTGG-TTTCAG-AACTA-TTCCAT--GCTTGGGCAGG----TTT-----GTTTAACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
Reference ( family-4244 ) : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TT--ATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGAT-AATAG-ATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAAT--AATCA-TTTTCTTTGAAGGAAAA-GG-----G---GGGGGGGGGT-------TCAAACATTTAAAAAATA---ATA-TCACTGCGACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTT-C-TATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCC-ACTG----TG----GCT-CATG--GCCACTGG-TTTCAG-AACTA-TTCCAT--GCTTGGGCAGG----TTT-----GTTTAACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
gi|1 : ATTCGGCGTTTTGGACAC--AAAGCTGTTAGGG-T-GCATTT-ATTTGTTATTTGTTC-AATGTTTG-TGTG-----TTT--T-GGAAAATTTGTTTT-G--T-TG----TTTTTT-TT-------T------TTTTATTTATTT-TTTTTAT-GTTAT--A--------------ATT---TCACTTATT-A-T---TACTTATT--TTTTATGTA----TTT--TAATAAA-TAGATTAATATCATTTTA-ATT-A-TATTATTAAA-TGTATCTGATAT--GTTAAAGTTTAATCA-TTTTTCTTGAAGGAAAA-GG-----G---GGGGGGGCGT-------TCAAACATTTAAAAAATA---TTACTCACTGCGACA--TTACCTATATGGCTTGC--TCCCTC-CTTCTTTT-C-TATTTCC--CACAGT-GG-A-GCCTTGG--AATTTCCCC--T--T-CTTTCC----A--TTGA----CTCC-ACTG----TG----GGT-CAT---GTCACTGG-TTC----AACTA-TTCCATTGACATGGGCAGG----TTT-----A--CACCTTC--TGCC-CTTTGTTCTTAG-TAG-AGTACA-TTAATACTATGTGATTATAATTCT-TT-CTATTATACC-TAC-GTCACAATTTTC-TG--TATAA-TATGTAT
gi|10 : aATTCGG-GTTTTGGACAC--TAAGCTGCAAGGGGT-GC---T--TTTTTTATTTATTC-AATTTTTG-TGTG-----TTT--T-TTATATTTTGTTTTTG--T-TGTTTTGTTTTTATTATTATTAT------TT--GTTTGTTTGTTTTTAT-TGT-T--ACTacatgtatt
gi|11 : a-TATTTCC--CACACTGGG-A-GCCTTTG--AATGTTCCCCTT--T-CCTTCTC-GAA--GGGA----GTCC-ACTG----CG----GTT-CATG--GCCACTGG-TTTCAA-AACTA-TCCCAT--GCTTGGGTAGG----GTG-----GTTT
gi|12 : ACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTATTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAGTTTGTATTTG--T-TG-------TTT-TT-------T------TT--ATTTGTTTGTTTTTAT-
gi|13 : GATAT--GTTAAAAT--AATCATTTTTCTTTGAGGGAAAATTG-----G---GGGGAGGGGT-------TCAAACATTTAAAAAATATATATA-TCACTGCGACAG-TTACCTA------CTGC--CTtgt
gi|14 : ------CTGC--GTCC-T-ATCTTTTTAT-TGTTTCC--CACACTGGC-A-GCTCATG--AATTTCCTCCTT--T-CCTTATC-CAA--GCGA----
gi|15 : ttcc-AGTAGATTCAATGCAAATCAATTCTGA---T-TTTCTATTATACC-TAC-GT--CAATTTTC-
gi|16 : tagttcATTCGG-ATTTTGGACAC--ATAGCTGCTAGGGGT-GCATTT-ATTTTTTA
gi|17 : aATTCGG-GTTTTGGACAC--AACGCTGCTAGGGGT-GCATTT-
gi|2 : G-GTTTTGGACACTTGAAGCTGCTAGGG-T-GCATT--ATTTTTTATT-GTTC-AATTTT-G-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TT--ATTTGTTTGTTTTT-T-GTT-T--ACTA-T-------CTATC---TTATTCA-T-A-T---TA-----T--TTATGTATA----TCTA-TAATAAAATAGAT-AATAG-ATTTTA-TTTTA-TATTATTAAAATG-ATCTGATAT--GTT-AAAT--AATCA-TTTTCTTTGAAGGAAAA-GGC----GTGTGGGGGGGGGTTAGGGTATCAAACATTTAAAAAA-A---ATA-TCACTCGGACAGTTTACCTA------CTGC--TTCC-C-CTTCTTTT-CTTATTTCC--CACACTGGG-A-GCATTTG--AATTTCCCCCTT--T-CCTTCTC-C-A--GCGA----GTCCAACTG----TG----GCT-CAT---GCCACTGG-TTTCAGAAACTA-TT-CAT--GCTT-GGCACG----TTT-----ACTTAA--TT--TG-C-CTTTGTT-TTAG-T-G-AGTAAATTTAATACAATTCGATTATAA---T-TA-CTATTATAAC-TAT-GT--C-ATATTC-TG------A-TATATATTGTTATT
gi|3 : atttTTTTTG-TGTG-----TTTGTT-TG----TTTGTTTTTT--TTGG----GTTTTT-TT------------------GTTTG---GCTTTTAT-ATT-T--ATTG-T--------TA-C---TAATGTATT-G-TGTTTA-----TA-TTTTTTATA----TTCA-TAATGAAATAGAT-AATAG-ATTTTA-ATTTA-CATTATTAAAATGTATCTG--AT--GTTATAAT--AAT-A-TTTTTTTT-AAGG--AA-GG-----G---GGAGGGGG----------CAAACA--TAAAAAA-------A-TCACAGCGACAG-ATACCTC------CTGCCATGCC-CTCTCCTTCT-CATATTTCC--AACACTTGG-G-CCCTTTG--AA-TTCCTCCTT--T-CCTTCTC-CAA--GTGA----GTCC-ATTGTACATG----GTT-CATG--GCCACTGG-TTTCAG-AGTTA-TTCAAT--GCTTGGGTAGGATGATCTGGATGGTTTAACGTT--TG-C-CTTTGTT-TTAG-T-GCAGTAGATTTAATACAATTCAATTATAA---TGTT-TTATTATATC-TAC-GG--CAATTTTC-TGTAT-T-A-TATGTA
gi|4 : gtttcaatgttttATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGTTGCATTTTATTTTTTATT-GTTCCAATTTTT--CGTG-----TTT--TGTGTAAATTTGTTTT-G--T-GG----TTTTTT-GT-------T------TT--ATTTGTTTGTTTTTAT-G-T-T--AC-A-T-------CTATC---TTATTCATT-ATT---TA-----TTATTTCCTATGTAATTTTATTAATAAAATAG-T-AATGG-ATTTTATTTTTATTATTATTAGAATGTATCTGA-ATTAGTT-AAAT--AATAT-TTTTCTTTG-AGGAAAG-GGTGGGTG---GGGGGGGGGaaaatgaatt
gi|5 : aAGCTGCTAGGGGT-GCATTT-ATTTTTTATTT---C-AATTTTTACTGTGGTTTTTTT--T-T----ATTTGTTTTTTATT-GG----GTTTCT-TT-------T------TT--GTTAGTTTGTTTTTATTGTT-TTTACTG-TTATTATTCTATT---TTTTTTTTTCA-T---TA-----T--TTTTTAAAA----TTTG-TAATAAAATAGAT-AATAG-AGTTTA-ATTTA-TATTATCAAAATGTATCTGAaaa
gi|6 : GCTGCTAGAGGT-GCATTT-ATTTTTTATTTAGTC-AATTTTTG-TGTG-----TTT--T-TTAAAATTTATTTTTGT-T-GG----GTTTTT-TT-------TAAATTATT--ATTTGTTCGTTTTTAT-TGT-T--ACTATT-------TTATCGTTTTAATTATT-A-T---TA-----T--TTTTTT-TA----TTTA-TAACAAAATAGAT-AATAG-ATTTTA-TTTTA-TATTAT
gi|7 : CCTT--T-CCTTCTC-CAA--GCGA----GTCC-ATTG----TG----GCC-CATG--GCCACGGA-TTTCAG-AACTA-TCCCAT--GCTTGGGTATG----GTG-----GTTTAACTTT--TG-C-CTTTGTT-TTAGAA-G-AGTAAATTTAATACAA---GAC--TAA---T-TT-CTATTATACCTTACGGT--CAATTTTCGTG--T-T-ATTATGTATTATT
gi|8 : TTTCCACCACGCTGGGCATACCTTTGTTAATTTCCCCCTTGGTGCCTTCGCTCAACTGCGATCTCGGCT-ATTG----TGATGCGCTTCATGTGGCCACTGGTTTTCAT-AACTATTTTCAT--GC-TGGGCAGG----TT-------TTTAACGTTCCTG-CGTTTTGTT-CTAG-T-G-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATACAGGTATTACATATCTTATATCTTTTTCAGATTAGTTTCTGCTATAACTACTTTTTGGGGGAGGGGGAGGGGGCAAATAAAATAAATTTGAAAGTGAAATTTACAGAGATTCCTGCACATCCCCTTTCACTTCACAT
Alignments
lowQualScore : 11111 11 11111 22222222222222 222222222222 111 111 22222222 1111 11 1 11 333333333 3333333 333333 1 11 222222 11 111 222 1111 1111 1111 111 33333333333333 11 111 111 11 33333333
lowQualScore : 6 77 1 4 4 66 5 5 22222 66 5 666 3 11 5 33333 5 77777777777777 66 999 5 77 999999999999 111 666 111 33333333 1 1 4444 88 6 6 77 6 0 0 5 11 0 11 999 0 0 8 222222222 2222222 3 333333 0 22 333333 11 444 000 99 2 666 99 77 5 5 1 77 2222 6 4444 4444 6 555 6 77 6 1 99 3 11111111111111 3 11 8 8 8 222 6 1 0 66 11 444 8 8 8 8 11 0 8 55555555
lowQualScore : . .. . . . .. . . ..... .. . ... . .. . ..... . .............. .. ... . .. ............ ... ... ... ........ . . .... .. . . .. . . . . .. . .. ... . . . ......... ....... . ...... . .. ...... .. ... ... .. . ... .. .. . . . .. .... . .... .... . ... . .. . . .. . .............. . .. . . . ... . . . .. .. ... . . . . .. . . ........
lowQualScore : 7 99 1 4 4 77 7 0 55555 99 0 111 2 99 0 11111 0 88888888888888 99 333 7 99 999999999999 777 888 777 55555555 0 7 2222 33 7 7 77 7 8 8 6 00 6 00 222 8 8 0 000000000 5555555 2 555555 0 55 000000 00 000 000 22 5 888 22 99 7 7 4 99 1111 7 2222 2222 7 888 7 77 7 0 22 5 77777777777777 8 00 0 0 0 222 7 4 8 66 44 000 0 0 0 0 00 8 0 00000000
consensus : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TT--ATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGAT-AATAG-ATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAAT--AATCA-TTTTCTTTGAAGGAAAA-GG-----G---GGGGGGGGGT-------TCAAACATTTAAAAAATA---ATA-TCACTGCGACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTT-C-TATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCC-ACTG----TG----GCT-CATG--GCCACTGG-TTTCAG-AACTA-TTCCAT--GCTTGGGCAGG----TTT-----GTTTAACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
Reference ( family-4244 ) : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TT--ATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGAT-AATAG-ATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAAT--AATCA-TTTTCTTTGAAGGAAAA-GG-----G---GGGGGGGGGT-------TCAAACATTTAAAAAATA---ATA-TCACTGCGACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTT-C-TATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCC-ACTG----TG----GCT-CATG--GCCACTGG-TTTCAG-AACTA-TTCCAT--GCTTGGGCAGG----TTT-----GTTTAACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
gi|1 : ATTCGGCGTTTTGGACAC--AAAGCTGTTAGGG-T-GCATTT-ATTTGTTATTTGTTC-AATGTTTG-TGTG-----TTT--T-GGAAAATTTGTTTT-G--T-TG----TTTTTT-TT-------T------TTTTATTTATTT-TTTTTAT-GTTAT--A--------------ATT---TCACTTATT-A-T---TACTTATT--TTTTATGTA----TTT--TAATAAA-TAGATTAATATCATTTTA-ATT-A-TATTATTAAA-TGTATCTGATAT--GTTAAAGTTTAATCA-TTTTTCTTGAAGGAAAA-GG-----G---GGGGGGGCGT-------TCAAACATTTAAAAAATA---TTACTCACTGCGACA--TTACCTATATGGCTTGC--TCCCTC-CTTCTTTT-C-TATTTCC--CACAGT-GG-A-GCCTTGG--AATTTCCCC--T--T-CTTTCC----A--TTGA----CTCC-ACTG----TG----GGT-CAT---GTCACTGG-TTC----AACTA-TTCCATTGACATGGGCAGG----TTT-----A--CACCTTC--TGCC-CTTTGTTCTTAG-TAG-AGTACA-TTAATACTATGTGATTATAATTCT-TT-CTATTATACC-TAC-GTCACAATTTTC-TG--TATAA-TATGTAT
gi|10 : aATTCGG-GTTTTGGACAC--TAAGCTGCAAGGGGT-GC---T--TTTTTTATTTATTC-AATTTTTG-TGTG-----TTT--T-TTATATTTTGTTTTTG--T-TGTTTTGTTTTTATTATTATTAT------TT--GTTTGTTTGTTTTTAT-TGT-T--ACTacatgtatt
gi|11 : a-TATTTCC--CACACTGGG-A-GCCTTTG--AATGTTCCCCTT--T-CCTTCTC-GAA--GGGA----GTCC-ACTG----CG----GTT-CATG--GCCACTGG-TTTCAA-AACTA-TCCCAT--GCTTGGGTAGG----GTG-----GTTT
gi|12 : ACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTATTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAGTTTGTATTTG--T-TG-------TTT-TT-------T------TT--ATTTGTTTGTTTTTAT-
gi|13 : GATAT--GTTAAAAT--AATCATTTTTCTTTGAGGGAAAATTG-----G---GGGGAGGGGT-------TCAAACATTTAAAAAATATATATA-TCACTGCGACAG-TTACCTA------CTGC--CTtgt
gi|14 : ------CTGC--GTCC-T-ATCTTTTTAT-TGTTTCC--CACACTGGC-A-GCTCATG--AATTTCCTCCTT--T-CCTTATC-CAA--GCGA----
gi|15 : ttcc-AGTAGATTCAATGCAAATCAATTCTGA---T-TTTCTATTATACC-TAC-GT--CAATTTTC-
gi|16 : tagttcATTCGG-ATTTTGGACAC--ATAGCTGCTAGGGGT-GCATTT-ATTTTTTA
gi|17 : aATTCGG-GTTTTGGACAC--AACGCTGCTAGGGGT-GCATTT-
gi|2 : G-GTTTTGGACACTTGAAGCTGCTAGGG-T-GCATT--ATTTTTTATT-GTTC-AATTTT-G-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TT--ATTTGTTTGTTTTT-T-GTT-T--ACTA-T-------CTATC---TTATTCA-T-A-T---TA-----T--TTATGTATA----TCTA-TAATAAAATAGAT-AATAG-ATTTTA-TTTTA-TATTATTAAAATG-ATCTGATAT--GTT-AAAT--AATCA-TTTTCTTTGAAGGAAAA-GGC----GTGTGGGGGGGGGTTAGGGTATCAAACATTTAAAAAA-A---ATA-TCACTCGGACAGTTTACCTA------CTGC--TTCC-C-CTTCTTTT-CTTATTTCC--CACACTGGG-A-GCATTTG--AATTTCCCCCTT--T-CCTTCTC-C-A--GCGA----GTCCAACTG----TG----GCT-CAT---GCCACTGG-TTTCAGAAACTA-TT-CAT--GCTT-GGCACG----TTT-----ACTTAA--TT--TG-C-CTTTGTT-TTAG-T-G-AGTAAATTTAATACAATTCGATTATAA---T-TA-CTATTATAAC-TAT-GT--C-ATATTC-TG------A-TATATATTGTTATT
gi|3 : atttTTTTTG-TGTG-----TTTGTT-TG----TTTGTTTTTT--TTGG----GTTTTT-TT------------------GTTTG---GCTTTTAT-ATT-T--ATTG-T--------TA-C---TAATGTATT-G-TGTTTA-----TA-TTTTTTATA----TTCA-TAATGAAATAGAT-AATAG-ATTTTA-ATTTA-CATTATTAAAATGTATCTG--AT--GTTATAAT--AAT-A-TTTTTTTT-AAGG--AA-GG-----G---GGAGGGGG----------CAAACA--TAAAAAA-------A-TCACAGCGACAG-ATACCTC------CTGCCATGCC-CTCTCCTTCT-CATATTTCC--AACACTTGG-G-CCCTTTG--AA-TTCCTCCTT--T-CCTTCTC-CAA--GTGA----GTCC-ATTGTACATG----GTT-CATG--GCCACTGG-TTTCAG-AGTTA-TTCAAT--GCTTGGGTAGGATGATCTGGATGGTTTAACGTT--TG-C-CTTTGTT-TTAG-T-GCAGTAGATTTAATACAATTCAATTATAA---TGTT-TTATTATATC-TAC-GG--CAATTTTC-TGTAT-T-A-TATGTA
gi|4 : gtttcaatgttttATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGTTGCATTTTATTTTTTATT-GTTCCAATTTTT--CGTG-----TTT--TGTGTAAATTTGTTTT-G--T-GG----TTTTTT-GT-------T------TT--ATTTGTTTGTTTTTAT-G-T-T--AC-A-T-------CTATC---TTATTCATT-ATT---TA-----TTATTTCCTATGTAATTTTATTAATAAAATAG-T-AATGG-ATTTTATTTTTATTATTATTAGAATGTATCTGA-ATTAGTT-AAAT--AATAT-TTTTCTTTG-AGGAAAG-GGTGGGTG---GGGGGGGGGaaaatgaatt
gi|5 : aAGCTGCTAGGGGT-GCATTT-ATTTTTTATTT---C-AATTTTTACTGTGGTTTTTTT--T-T----ATTTGTTTTTTATT-GG----GTTTCT-TT-------T------TT--GTTAGTTTGTTTTTATTGTT-TTTACTG-TTATTATTCTATT---TTTTTTTTTCA-T---TA-----T--TTTTTAAAA----TTTG-TAATAAAATAGAT-AATAG-AGTTTA-ATTTA-TATTATCAAAATGTATCTGAaaa
gi|6 : GCTGCTAGAGGT-GCATTT-ATTTTTTATTTAGTC-AATTTTTG-TGTG-----TTT--T-TTAAAATTTATTTTTGT-T-GG----GTTTTT-TT-------TAAATTATT--ATTTGTTCGTTTTTAT-TGT-T--ACTATT-------TTATCGTTTTAATTATT-A-T---TA-----T--TTTTTT-TA----TTTA-TAACAAAATAGAT-AATAG-ATTTTA-TTTTA-TATTAT
gi|7 : CCTT--T-CCTTCTC-CAA--GCGA----GTCC-ATTG----TG----GCC-CATG--GCCACGGA-TTTCAG-AACTA-TCCCAT--GCTTGGGTATG----GTG-----GTTTAACTTT--TG-C-CTTTGTT-TTAGAA-G-AGTAAATTTAATACAA---GAC--TAA---T-TT-CTATTATACCTTACGGT--CAATTTTCGTG--T-T-ATTATGTATTATT
gi|8 : TTTCCACCACGCTGGGCATACCTTTGTTAATTTCCCCCTTGGTGCCTTCGCTCAACTGCGATCTCGGCT-ATTG----TGATGCGCTTCATGTGGCCACTGGTTTTCAT-AACTATTTTCAT--GC-TGGGCAGG----TT-------TTTAACGTTCCTG-CGTTTTGTT-CTAG-T-G-
blockSeqs : . TT G T T TA C C GTTTT GT G TAT T AT T TTTTG A ATTATTAT . TGT . TT TGTTATTATTC GTT AT GTT TTA G A TAAT AT . . TT T T TA A . CAT T TGGGTG TAGGGTA T TATATA . GT . CA CT AT AC G CAT TT GG G T A CT TCTC A TACA ATGC T GTG T GA T C . T ATGATCTGGATGGT G CC . G . AA C G AT TC . G T T G . G TATTA
blockSeqs : . . G . . TG . . . . . GAA T T . G . TAAATTA . TG . . TATTT . CA . TA T A . A . . T . T . A . CA . CGTGT . T AA . G . . T CT . G A . . . . A . . . . . . G . A . C . T GTGGT T . . . . T . A TT TA . . . . . . . TTAT
blockSeqs : . . G . . TA . . . . . GAA T . . G . T . GT . . TATC . A . T C A . A . . A . . . . . AT . G . . . . G . . C CA . G A . . . . A . . . . . . G . G . C . T TTTAC G . . . . T . G TT TA . . . . . . . A
blockSeqs : . . G . . G . . . . . GTA T . . T . T . AT . . TGT . G . T T A . G . . A . . . . . A . G . . . T A . . . . A . . . . . . G . G . T . T GTGGT . . . . . T . A . . . . . . . . .
blockSeqs : . . G . . G . . . . . TAA T . . G . T . TG . . ATC . A . T T . . A . . T . . G G . . . . A . . . . . . . . T . . . . TTT .
blockSeqs : . G . . T . . . . . G T . . G . T . G . . . . . . . .
blockSeqs : G . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : TG ** TGTTC******* T******* A* ** ****** G** G* ** GTGGT********* T** *** **
originalCons : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TT--ATTTGTTTGTTTTTAT-GTT-T--ACTA-T-------CTATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGAT-AATAG-ATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAAT--AATCA-TTTTCTTTGAAGGAAAA-GG-----G---GGGGGGGGGT-------TCAAACATTTAAAAAATA---ATA-TCACTGCGACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTT-C-TATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCC-ACTG----TG----GCT-CATG--GCCACTGG-TTTCAG-AACTA-TTCCAT--GCTTGGGCAGG----TTT-----GTTTAACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
finalCons : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GG----GTTTTT-TT-------T------TT--ATTTGTTTGTTTTTAT-GTT-T--ACTGTTC-------TATC---TTATTTATT-A-T---TAT-------TTTTNTATA----TTTA-TAATAAAATAGAT-AATAG-ATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAAT--AATCA-TTTTCTTTGAAGGAAAA-GG-----G---GGGGGGGGGT-------TCAAACATTTAAAAAATA---ATA-TCACTGCGACAG-TTACCTA------CTGC--TTCC-C-CTCCTTTT-C-TATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCC-ACTG----TG----GCT-CATG--GCCACTGG-TTTCAG-AACTA-TTCCAT--GCTTGGGCAGGGTGGT---------TTAACNTT--TG-C-CTTTGTT-TTAGT--G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATACAGGTATTACATATCTTATATCTTTTTCAGATTAGTTTCTGCTATAACTACTTTTTGGGGGAGGGGGAGGGGGCAAATAAAATAAATTTGAAAGTGAAATTTACAGAGATTCCTGCACATCCCCTTTCACTTCACAT
Alignments
lowQualScore : 11111 11111 111111 11111 222222 111 111 22222222 1111 11 111 4444444 111 11 333333 1 1 222222 11 111 111 1111 111111111 3333333333 11 111 111 11 33333333
lowQualScore : 6 77 1 4 4 66 5 5 22222 66 5 666 33333 444444 0 22222 66 5 999 77 1 222222 6 111 666 111 33333333 1 1 4444 88 1 6 6 77 6 0 0 11 11 0 444 999 0 0 8 6666666 444 33 3 333333 0 2 0 333333 11 444 222 8 99 2 666 99 77 5 5 77 2222 6 888888888 6 99 6 1 6 6 2 99 3 3333333333 5 2 8 3 99 8 8 8 222 6 1 0 66 11 444 8 8 8 8 11 0 8 55555555
lowQualScore : . .. . . . .. . . ..... .. . ... ..... ...... . ..... .. . ... .. . ...... . ... ... ... ........ . . .... .. . . . .. . . . .. .. . ... ... . . . ....... ... .. . ...... . . . ...... .. ... ... . .. . ... .. .. . . .. .... . ......... . .. . . . . . .. . .......... . . . . .. . . . ... . . . .. .. ... . . . . .. . . ........
lowQualScore : 7 99 1 4 4 77 7 0 55555 99 0 111 55555 444444 9 55555 99 1 444 99 7 111111 7 777 888 777 55555555 0 7 2222 33 7 7 7 77 7 8 8 66 00 8 888 222 8 8 0 0000000 000 22 2 555555 0 5 0 000000 00 000 000 0 22 5 888 22 99 7 7 99 1111 7 333333333 7 22 7 0 7 7 5 22 5 3333333333 2 5 0 8 00 0 0 0 222 7 4 8 66 44 000 0 0 0 0 00 8 0 00000000
consensus : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GGGTTTTTTTT------TTAT-----TTGTTTGTT--TTTAT-GTTT--ACTGTT------CT-ATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGA-TAATA-GATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAA--TAATCA-TTTTCTTTGAAGGAAAA-GG-G-GT--GGGGGGG---GGGT-TCAAACATTTAAAAAATA---ATA-TCACTGCGACAGTT-ACCTA------CTGC--TTCC-C-CTCCTTTT-C-T-ATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCCA-CTGT----G----GCT-CATG--GCCACTGG-TTTCAGAA-CTA-TTCCAT--GCTTGGGCA---------GGNTGGTTTA-ACNTTC-TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
Reference ( family-4244 ) : ATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTTTTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GGGTTTTTTTT------TTAT-----TTGTTTGTT--TTTAT-GTTT--ACTGTT------CT-ATC---TTATTTATT-A-T---TA-----T--TTTTNTATA----TTTA-TAATAAAATAGA-TAATA-GATTTTA-NTTTA-TATTATTAAAATGTATCTGATAT--GTTAAAA--TAATCA-TTTTCTTTGAAGGAAAA-GG-------GGGGGGG---GGGT-TCAAACATTTAAAAAATA---ATA-TCACTGCGACAGTT-ACCTA------CTGC--TTCC-C-CTCCTTTT-C-T-ATTTCC--CACACTGGG-A-GCCTTTG--AATTTCCCCCTT--T-CCTTCTC-CAA--GCGA----GTCCA-CTGT----G----GCT-CATG--GCCACTGG-TTTCAGAA-CTA-TTCCAT--GCTTGGGCA---------GGGTGGTTTA-ACNTT--TG-C-CTTTGTT-TTAG-T-G-AGTAGATTTAATACAATTCGATTATAA---T-TT-CTATTATACC-TAC-GT--CAATTTTC-TG--T-T-A-TATGTATTGTTATT
gi|1 : ATTCGGCGTTTTGGACAC--AAAGCTGTTAGGG-T-GCATTT-ATTTGTTATTTGTTC-AATGTTTG-TGTG-----TTT--T-GGAAAATTTG-TTTTG--T--TGTTTTTTTT------TT-T-----TTATTTATT--TTT----TTT--A-TGTT------ATAATT---TCACTTATT-A-T---TACTTATT--TTTTATGTA----TTT--TAAT-AAATAGATTAATATCATTTTA-A-TTA-TATTATT-AAATGTATCTGATAT--GTTAAAGTTTAATCA-TTTTTCTTGAAGGAAAA-GG-------GGGGGGG---GCGT-TCAAACATTTAAAAAATA---TTACTCACTGCGACA-TT-ACCTATATGGCTTGC--TCCCTC-CTTCTTTT-C-T-ATTTCC--CACAGT-GG-A-GCCTTGG--AATTTCCCC--T--T-CTTTCC----A--TTGA----CTCCA-CTGT----G----GGT-CAT---GTCACTGG-TTC---AA-CTA-TTCCATTGACATGGGCA-------------GGTTTACACCTTC-TGCC-CTTTGTTCTTAG-TAG-AGTACA-TTAATACTATGTGATTATAATTCT-TT-CTATTATACC-TAC-GTCACAATTTTC-TG--TATAA-TATGTAT
gi|10 : aATTCGG-GTTTTGGACAC--TAAGCTGCAAGGGGT-GC---T--TTTTTTATTTATTC-AATTTTTG-TGTG-----TTT--T-TTATATTTTGTTTTTG--T--TGTTTTGTTT------TTATTATTATTATTTGTTTGTTTGT-TTTT--ATTGTT------acatgtatt
gi|11 : a-T-ATTTCC--CACACTGGG-A-GCCTTTG--AATGTTCCCCTT--T-CCTTCTC-GAA--GGGA----GTCCA-CTGC----G----GTT-CATG--GCCACTGG-TTTCAAAA-CTA-TCCCAT--GCTTGGGTA---------GGGTGGTTTact
gi|12 : ACAC--AAAGCTGCTAGGGGT-GCATTT-ATTTATTATTTGTTC-AATTTTTG-TGTG-----TTT--T-TGAAAGTTTGTATTTG--T-TG---TTTTTT------TTAT-----TTGTTTGTT--TTTAT-
gi|13 : GATAT--GTTAAAA--TAATCATTTTTCTTTGAGGGAAAATTG-------GGGGGAG---GGGT-TCAAACATTTAAAAAATATATATA-TCACTGCGACAGTT-ACCTA------CTGC--CTtgt
gi|14 : ------CTGC--GTCC-T-ATCTTTTTAT-T-GTTTCC--CACACTGGC-A-GCTCATG--AATTTCCTCCTT--T-CCTTATC-CAA--GCGA----
gi|15 : ttcc-AGTAGATTCAATGCAAATCAATTCTGA---T-TTTCTATTATACC-TAC-GT--CAATTTTC-
gi|16 : tagttcATTCGG-ATTTTGGACAC--ATAGCTGCTAGGGGT-GCATTT-ATTTTTTA
gi|17 : aATTCGG-GTTTTGGACAC--AACGCTGCTAGGGGT-GCATTT-
gi|2 : G-GTTTTGGACACTTGAAGCTGCTAGGG-T-GCATT--ATTTTTTATT-GTTC-AATTTT-G-TGTG-----TTT--T-TGAAAATTTGTTTTTG--T-GGGTTTTTTTT------TTAT-----TTGTTTGTT--TTT-T-GTTT--ACTAT-------CT-ATC---TTATTCAT--A-T---TA-----T--TTATGTATA----TCTA-TAATAAAATAGA-TAATA-GATTTTA-TTTTA-TATTATTAAAATG-ATCTGATAT--GTTAAA---TAATCA-TTTTCTTTGAAGGAAAA-GGCGTGTGGGGGGGGGTTAGGGTATCAAACATTTAAAAAA-A---ATA-TCACTCGGACAGTTTACCTA------CTGC--TTCC-C-CTTCTTTT-C-TTATTTCC--CACACTGGG-A-GCATTTG--AATTTCCCCCTT--T-CCTTCTC-CA---GCGA----GTCCAACTGT----G----GCT-CATG---CCACTGG-TTTCAGAAACTA-TTC-AT--GCTTGG-CA---------CGTTTACTTA-A--TT--TG-C-CTTTGTT-TTAG-T-G-AGTAAATTTAATACAATTCGATTATAA---T-TA-CTATTATAAC-TAT-GT--C-ATATTC-TG------A-TATATATTGTTATT
gi|3 : atttTTTTTG-TGTG-----TTTGTT-TG----TTTGTTTTTT--TTGGGTTTTTTT---------GT-----TTG---GCT--TTTAT-ATTT--ATTGTTA-----CT-A-------ATGTATT-G-TGTTTA-----TA-TTTTTTATA----TTCA-TAATGAAATAGA-TAATA-GATTTTA-ATTTA-CATTATTAAAATGTATCTGAT----GTTATAA--TAAT-A-TTTTTTTT-AAGGAA----G-------GGGGAGG---GGG---CAAACAT--AAAAAA-------A-TCACAGCGACAGAT-ACCTC------CTGCCATGCC-CTCTCCTTCT-CAT-ATTTCC--AACACTTGG-G-CCCTTTG--AATT-CCTCCTT--T-CCTTCTC-CAA--GTGA----GTCCA-TTGTACATG----GTT-CATG--GCCACTGG-TTTCAGAG-TTA-TTCAAT--GCTTGGGTAGGATGATCTGGATGGTTTA-ACGTT--TG-C-CTTTGTT-TTAG-T-GCAGTAGATTTAATACAATTCAATTATAA---TGTT-TTATTATATC-TAC-GG--CAATTTTC-TGTAT-T-A-TATGTA
gi|4 : gtttcaatgttttATTCGG-GTTTTGGACAC--AAAGCTGCTAGGGGTTGCATTTTATTTTTTATT-GTTCCAATTTTT--CGTG-----TTT--TGTGTAAATTTGTTTT-G--T-GGTTTTTTGTT------TTAT-----TTGTTTGTT--TTTAT-G-TT--AC--AT------CT-ATC---TTATTCATT-ATT---TA-----TTATTTCCTATGTAATTTTATTAATAAAATAG--TAATG-GATTTTATTTTTATTATTATTAGAATGTATCTGA-ATTAGTT-AAA--TAATAT-TTTTCTTTG-AGGAAAG-GGTGGGT--GGGGGGG---GGGaaaatgaatt
gi|5 : aAGCTGCTAGGGGT-GCATTT-ATTTTTTATTT---C-AATTTTTACTGTGGTTTTTTT--T-T----ATTTGTTTTTTATT-GGGTTTCTTTT------TTGT-----TAGTTTGTT--TTTATTGTTTTTACTGTTATTATTCT-ATT---TTTTTTTTTCA-T---TA-----T--TTTTTAAAA----TTTG-TAATAAAATAGA-TAATA-GAGTTTA-ATTTA-TATTATCAAAATGTATCTGAaaa
gi|6 : GCTGCTAGAGGT-GCATTT-ATTTTTTATTTAGTC-AATTTTTG-TGTG-----TTT--T-TTAAAATTTATTTTTGT-T-GGGTTTTTTTTAAATTATTAT-----TTGTTCGTT--TTTAT-TGTT--ACTATT------TT-ATCGTTTTAATTATT-A-T---TA-----T--TTTTTT-TA----TTTA-TAACAAAATAGA-TAATA-GATTTTA-TTTTA-TATTAT
gi|7 : CCTT--T-CCTTCTC-CAA--GCGA----GTCCA-TTGT----G----GCC-CATG--GCCACGGA-TTTCAGAA-CTA-TCCCAT--GCTTGGGTA---------TGGTGGTTTA-ACTTT--TG-C-CTTTGTT-TTAGAA-G-AGTAAATTTAATACAA---GAC--TAA---T-TT-CTATTATACCTTACGGT--CAATTTTCGTG--T-T-ATTATGTATTATT
gi|8 : TTTCCACCACGCTGGGCATACCTTTGTTAATTTCCCCCTTGGTGCCTTCGCTCAACTGCGATCTCGGCTA-TTGT----GATGCGCTTCATGTGGCCACTGGTTTTCATAA-CTATTTTCAT--GC-TGGGCA---------GGTT--TTTA-ACGTTCCTG-CGTTTTGTT-CTAG-T-G-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATACAGGTATTACATATCTTATATCTTTTTCAGATTAGTTTCTGCTATAACTACTTTTTGGGGGAGGGGGAGGGGGCAAATAAAATAAATTTGAAAGTGAAATTTACAGAGATTCCTGCACATCCCCTTTCACTTCACAT