lowQualScore : 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111
lowQualScore : 55 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1 555555555555 2222222 999999999999999999 222 3333333 11111 1 22 111 33333 1 22222 11 666666666666666666666666666 222 111 11 222 11 1 4444444444444 1111 111 444444444444444444444444 55555555555555555555555555555 11 222222 11 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 11111 1 4444444444444444444444 11111 55555555555555555555 222 33333333333 11111111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 111 1 11 33333333333 2222 1 22 1 66666666 1 0000000000000000000000000000000000000000000 555555555555555555555 111 2222 6666666666 1 1 22222222 555555555555555555555555555 1 1 3333 1111 2 4
lowQualScore : 55 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 4 55 3 3 999999999999 0 1 8888888 555555555555555555 4 444 6 2222222 6 4 77777 3 55 3 4 888 3 00000 9 6 6 33333 33 2 777777777777777777777777777 3 000 111 33 888 33 4 3 0 1 4 1111111111111 8 7777 1 8 5 22 666 555555555555555555555555 6 99999999999999999999999999999 7 3 3 44 222222 6 33 22 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 888 3 6 0 55555 11111 3 0 1 4 8888888888888888888888 2 3 7 2 4 22222 6 6 77777777777777777777 8 222 00000000000 66666666 6 9999 6 88 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8888 7 4 7 0 000 3 44 66666666666 6 4 3 9 1111 0 7 1 11 3 11111111 5 6 1 7777777777777777777777777777777777777777777 888888888888888888888 999 999 4444 0000000000 6 3 7 3 3 66666666 1 999999999999999999999999999 6 3 0000 6 7777 0 0 0
lowQualScore : .. . ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . .. . . ............ . . ....... .................. . ... . ....... . . ..... . .. . . ... . ..... . . . ..... .. . ........................... . ... ... .. ... .. . . . . . ............. . .... . . . .. ... ........................ . ............................. . . . .. ...... . .. .. ............................................................................................. .. ... . . . ..... ..... . . . . ...................... . . . . . ..... . . .................... . ... ........... ........ . .... . .. .............................................................................................................................................................................................................................................................................................................................................................................. .... . . . . ... . .. ........... . . . . .... . . . .. . ........ . . . ........................................... ..................... ... ... .... .......... . . . . . ........ . ........................... . . .... . .... . . .
lowQualScore : 00 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 88 3 7 777777777777 7 0 7777777 777777777777777777 7 777 7 3333333 7 0 33333 3 77 7 7 333 7 33333 0 0 5 22222 22 0 555555555555555555555555555 2 888 000 88 555 88 2 0 5 2 0 2222222222222 0 0000 0 0 4 44 000 888888888888888888888888 0 88888888888888888888888888888 0 0 5 00 000000 5 88 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 555 2 7 3 77777 33333 2 7 7 2 5555555555555555555555 5 7 8 5 0 88888 2 7 88888888888888888888 0 000 00000000000 00000000 6 6666 4 88 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333 3 7 0 7 000 3 33 33333333333 0 7 7 0 3333 7 0 0 00 3 77777777 7 0 0 0000000000000000000000000000000000000000000 000000000000000000000 000 333 3333 0000000000 0 3 7 7 3 00000000 0 333333333333333333333333333 3 3 3333 7 0000 7 0 0
consensus : NAAGGGGTGTAGTACGATACGCAATAAGGGAAA---AG-AACAAATTGTGCCCATCCTTCTTGGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAACAGTTCTCTCAATCCATTCGACTGGGGATANCTGCGGACTTGACTTGGTGGTACTGTGNNTAAAGTTCCCAATNCTGNTGGGCAAAGTCCCTGAATNCATGNNCTCGNAATACTGCGGGTCCGTTATCCGACTAACNACTTCGNCAGGNACGCCATGTCTGGCGAACGNCTCCAGTAGNTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCCTCGTGNNTAATTNAAGTCCATNAATGATGTTAGGACAAATTCATCCCTGNGGTTCCAAAACTCTNTGANNGNGNGNGGACA----TTGAGCCATGTTTTCAGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTNAANTGTCGGNNCAANANAN-TTT-CGNGACAGAGTATCTGCGAC--------CGGAATTTGCTTA----CC-GGTACATA-----GCGAN---ACTA-GGTCATANC-GCTGAAGTTG---TAA-AACATTCTCTGNAG-C-TNGGAG-GGGC-CGCGAAGNGTGG-CTTCTTNAAAA---T-GGAAC-AGAGGT----TTGT-GATCAGTTTGNACCGTGAC-TTTG-----CGACC--GTAAATGTACTG--ATGA-A-AG--CG-TTGCGT--CCGAANACAATAGCANA-CA------T---TTCC-TT----CTCTA-TCTGGGCGTAACTGGATTTC-G-C-TCGGNGT-----NAGTGCCCTTTGATGCA-NA--A---GC--TA-GGTTGGCTT----TCTTGCANTAANGCGGCN-CC----AAGNCCA--TACTTTGAAGC-ATC-GCACTG-AAG----ANT-AATG---AN---CTT-TTCAGGGTC-AAAATA-TGCT--A-A--AG-ACG---TGGCG-CT-------------TTAG-TAANGACCTCCTTGACCTT-TCTAAATGCNCCANCCTGTGCAGC--GTCCCAAATAAAATTCTACATC-TT--C----G----AG-----AGCAGCGTACGCANGGGG--CT-TGTNATT-TCTGACAA-----GN-TA-------GGTGCA-AA---TTT-GGTCAA----ATATGTGA--TCGTGCCTAGCANA-GTCTCT-AACTCACTA-GAT--TCG-T----TTGTGGAGGTCGCT---------------TCT-CATGG--ATCGC--T---GACACTTT-TCGGGGTCTG---GTTTNACACC-TT----TAGAGGT--TA-G--T-----ANG--TGACCAA----AGTATTTGACCTGTGCTAACTGNCTACTTGCCAGTTTTTCTGNATTTAGCCTGATGCCCTTCGAACTCTGANACGCTGTTGCNCTTTGCNTTNNCGNGCGGNNCNCGCGAAGAGGGCGCGGGTGCCATTGCTCCNGCCCGGGTGCTNATACCGTAGACNAGGACGTCTCANTCAAAAGCTNCGGCGAGACGANGCCCGGTAAAATGNCNTCA----AAG--CATTCGT----CTATCTTNCGCCGAAATTCGTCC-TGG-GATGACTTCA-ANCCAAACGGNAATC--TNAAATACCTATACCT-NCCA-AAT-------GGGGTGTTGAAGGT--T-AGGT--A-A-GAT---GATTCTTC--CGANAGCCTGAC-GTCCAATAN----CC-G---CGGGC----GTCTAG--TTTTGGTGAAGAA---CTTGG--C-TNCNG-AAGTTGA-GGNAGNA-CATC-TTCCAGGGTTCTCATGG--GA---TAATGTGGTC-CACG---ATAGCCTT-GTT---GAGTTCCNTGGGATCCCAGATCAT
Reference ( gi|2 ) : AAAGGGGT--AGTGCGATACTC--TAAG--ACACCTAGCAGTGGATCACGACCGTCATATTTAGATTTCTCCAATATCGGCTTAGCAACCTGAACAT--ACTTTTCTGCCAATCCGTTAGATTGAGGATGTCTACGG----GA---GG-AGTGCAATGAGCAAAAT-C---ATACTGTTTAGCAAAGTCTGCAAATCC-TGGG--AGGAATATTG-GGG-CCATTGTC--GC--ACAACCTTAGTGGGGATACCGAATTTCGCAAATAA-------AGCTT-----TT-CA-GTTGTACTTTTGGTAT-CAC-----GAAAGCTGTACAATGGTCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGGTAGTCGGGATTGGGTGTGGCTAAGTGGCTCTTTTGGGTTTGATGGTCTGTGTTTCTGACAGATATCACAGTTTGAAACTAATCTGGTACATGTAATATCAACTGATATTTTTGGCCAAAGTCAGAGCAGCGTGCCTCGCGAATGCATTTCTAATGCCCATGTGACCTTGATGTATGCAATCTAATATCTTTTGGCCTTAGTGAACGGGGAATCAAGAACTTTTCACTTT-TGAGTA--TGATG-CCATCAATAAT----CGAC-AGCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGGACAATCCCTACGACAT----TCAGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGACT-CAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAGA--GATCTTGG--AAATTGTCTGTT--ACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTA----CCCGGTACATA-----GCTAACATACTA-GGTCATAAC-ACTGAACTTG---TAATAACATTCTCTGTAG-C-TAGGAG-GGGC-TACAAAGAGTGG-CTTCTTGAAAA---TAGGGACAAGAGGC----TTAT-GGTCAGTTTCTACTCTGAC-TTTG-----TGACC--GTAAATGTACTG--ATGA-A-AG--CG-TTGCAT--CCGAAAACTATAGCAAA-CA------T---TTCC-TT----CTCTA-TCTGTGCGTAACTGGATTTC-A-C-TCTGTGT-----GAG-GCTCTTTGATGCA-AA--A---GC--TAGGGCTGACTT----TCTTGCATTAATGTGGCA-CC----AAGCCCA--TATTTTGAAGC-GTC-GCATTG-AAG----AGT-AGTG---AC---CTT-TTCAGGGTC-AAAATA-TGC---A-A--AG-GCA---TGAT--CT-------------TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCAATCTGTGCAGT--GTTCCAAACAAAATTCTACATC-TT--T----G----AG-----AGCAGTGTACGCAAGGGG--CT-TGTAATT-TCTGA-AA-----GG-TA-------GGTGCA-AA---TTT-GATAAA----ATAGTTCA--CCATGCCAAGCAGA-GTCTCT-AACTCA----GAT--TTG-T----TTGTGGGGGTTTCT---------------TCTACA-----ATCGC--T---GACACTTTGTCGGGATCTG---GTCCTACACC-CT----TAGAGGT--TA-G--T-----AAA--TGACCAA----AGTATTTGACCTTTG-TAACT-CCAACTT-CAAGTTTGTCTTTATTCAGTTTAATG-CCTTT----TC-GAG-------TG-AC----CTTTTGAGAACAGACCTC---AAGA----TTCGAT--CA-TGCTCTT-CTCTAGT-TCG--ACCA-ACACTAGGATATC---GTCAA---CTAGGGC--AACGACGCCTTCTAG---GTCTTCA----TAA--CATTCGT----CTATCTTTCTCTGGAATATGTCC-TGA-GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCA-AA--------GGTGTGTTAAAAGTGATAAGGT--A-A-GAG---GATGCTTC--CGATAACTTGATAGTCCAATAG----CC-ACT-CTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGG--CTTTTTGAAAGCTGA-GGTAGGA-CATC-TTACAATGTTTTCATTG--AG---TAGTAGGGTCTCAGT---ATTGCCTT-GTT---TAGGTCTTTAGGGTCT-AGA-CAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA---AG-AACAAATTGTGCCCATCCTTCTTGGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAACAGTTCTCTCAAT---TT-GACTGGAGATACCT--GG----GACTTGA-GGTACTGTGGTTAAAATTC---A-ACTGATGGGCAAAGTTCCTAAATTCATGAC--TAGAATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|6 : ggtgaaagacctatgttCCATTCGATTGAGGATAAC-GCGGACTTGA---GGTAGT---ATGTATAAAGT-CCCAATCCTGT---GCAAAGTCCTTGAATGT-TGCACTCGCAA-ATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACAT-------AGATT-----Tggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|1 : ggtgacagaccaaccccatcgataggagttgcacggtactccatgagcgaaatataaacatcagaattgccttcctcggctttcttgaacatgtttttgattgtttggacataaagctcagcttccTTTCGCTTCGTGACTAATTG--G-TCATAAATG-------GAC-AATTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGGACA----TTGAGCCATGTTTTCAGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGGC--AAATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA----CCAGGGACATGT----GCGAG---ACTAAGGGAATATC-TCTGAAGCTG---CAAAATCATACGCTGCAATC-TTGCAG-GTGC--AGAATGTATGGACTTCTGCATAA---TTGACACTAAGGGT----TTGT-GATCAGTTTGAACTGTAAT-ATTC-----CTACC--ATAAATGTACTG--GTGG-A-AGTACG-G-GCAT--CCAAACACAATAGCGTA-CA------T---TTCT-TT----TTCGA-TCTGGGCATAATTG-ATTTC-A-C-TAGGAGT-----CAGTGC-CTTAGATGCA-TA--ACACAC--T--GGTTTGCCA----TCCTGCAGTAAGGTGGCT-CC----A-GACCA--TGCTTTGAAGC-ATC--TACTGTAAT----ACT-A-TG---TA---CTT-CTGTGGATC-AAAATA-TGATAGA-ATGAG-GCT---TGGTGACC-------------TTA--TAAGAATATATTTGACCTT-TTCAAATGCCTCATCTTGTGCAGC--ATCCCAAATAAA---CT-CGGA-TT--T----GGACGAT-----AACAGCATTCTCATGGAA--GC-TGTCGCT-TCTGACAA-----AC-TC-------GGTGCA-AA---TTT-TGCCAG----ATATGTGA--TCATGCCTAGCACA-GTTTCT-AACTCACTATGAT--TC--T----T--TGAAGGTTGCA---------------TCT-CATGG--ATGGCTTT---GAC-CTTC-TTGGGGTCTG---GTTTTACACC-TTGCGAT-GAGAT--TATG--TGACCGAAA--TAATCAACCTCAG--TTTGACCT------ACT-GCTATTT-----TTTTTCTGAATTTAGCTTGATACCCTTC----TC-G-C-------TGCAT----CGTTCTAATGCAGCACGC---AAA------TGGGTGCCA-TGTTCTA-CCTTAGT-CTT--ACCATAGACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA----AAG--CATTCGT----CAATTTTACGCTGAAATTCATCC-TGG-GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA--------GGGGTGTTGAAGGT----AGTC--A-ATGAGCTTGACTCTTC--TGAAAGCTTGAGGGTCCAGTAA----CC-ACTACGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTG--C-TTCAGCAAGTTGA-GGTAGCA-CATCATTG-AGGGTTTTCATGG--GA---TAATGTGGGCGC-GA---ATAGCCTT-GTT---TAATTCTT--GGGTgaaa
gi|3 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaACCTT-TACGTA--TCAAGTCCATCAATAATGTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGAGGGTAGGGGtcctt
gi|3 : ttgtgGG--TAACTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCTGGTATATAAATGAGCAATCAAA--A-GGTCATAGTTGCTTGAGTTGATATGGCAACATTCTTTGGAG-C-CGGGAGAAGGCGCATGAAGGGT---TTTTTTAAAGAGTCT-GGAAC-AGAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG---TGATA-AG--CGCTTGCATCGCCCAAAACAATTGCAAAGTA------TGCGTCAC-TT----CTCTATTCTGGGCGTATC-GCATATCGG-C-TCGGAGTTCACAGAG-A-TTTTTGAGGCATAA--T---GCAATAGGCTCGCCAT----TC-TGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAATC-AACTTG-GAGTACTATT-AATGCGTAG---CT-------GGTCAAAAATA--GC---ATA--AGAACG---TGACA-CTAGGGCGCTAGCGGTTAG-AAATG-CTTCCGTAACCTCGTCAAAAAGCTC--ATTTCTGGGGTTCATCCCATGTAAATTTGTGCATT-TC--C----AT---AGTGTTAAGGAGTCTACGCATGGGGAACT-GGTTATCGTCTAG-CA-----CA-TAATTGCGGGGTGCACAACACTTTAGCTCAAGCTTAGAGGTCAGTTCGCGAGAAGC--A-GTCTGTGAGCTCG----GGCTGTTGCT----TTGAGGAGGTCACTCCGGTGGCTCATTGGTCTCGA-----ATAGC--TCAGGCCACTTTTTCGG--TGTGGGTGTTCGATTCCACT----TAGAGGTCGTG-G--A-----ATG--TGACCAA----AATACTTGACCTGTGCTAACTGCTTACTTGCCAGTTT---TGTAT---GCCTAATG-CTTTTGAACTCTGAGACGCTGTTG-TCTTTGCTTTAGCGAA-GGACCTTGCGAAGAGGGCGCTGAT--CATTGCTCCTGCTCGGGTGTTGATACCG-A-ACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTC-TTCTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCA-AATGGCGTTCGGGGTATTGAAAGT--T--GGTTAA-A-TAT---GATATTCCATCGATAA--GGAT-GTCCAATAGAGACCC-A---CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGCACCTGTT--AAGTTGCTGGAAGGAGCATC-TTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGAATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|5 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA----CC-GGTACATA-----GCTAA---ATTATGGTCATAAC-A-TGAACTTG---TAA-AA-ATTCTCTGTAG-CCTAGGAG-GGGC-TGCAAAGAGTGG-CTTCTTGAAAA---TAGGAACAA-AGGC----TTA--GGTCAGTTCCTACTCT-AC-TTTG-----TGACGTGGTAAATGTACTG--ATGA-A-AG--CG-TTGTGC--TCGAAAACTATAGCAAA--A------T---TTCCCTT----CTCTA-TCTGTGCGATACTGGATTTC-AAC-TCTGT-T-----GAG-ACTCTTTGATGCA-AATAA---GC--TATGGGTGACTT----CTTTGCATTAATGTGGCA-CC----AAGCCCA--TACTTTGAAGC-GTC-GC-TTG-AAG----AGTAAGTG---AC---CTT-TTCAGGGTC-AGAACATTGCT--A-T--AG-ACAGTTTGAC--TT-------------TTAG-Tt
gi|10 : AGAGGT----TTGT-GATCAGTTTG------GAC-T---------G-----GGAAATGT-CTACCATAA-ATAG--TG---ACAT--CCAAACACAATGGCATA-CACTAGTAT---TTCT-TTAGAACACTA-TTTGGGCATCACTG-ATTTC-A-C-TACGCGT-----CAA-TTCTTTTGATGgttaaat
gi|4 : tctgtataatcgaaatc---TTCC-TT----TTCAA-TCTGTGCGTATCATGTTTCC-G-CATCAGTA-------AGTGCCCTC-GACGCA-TA--A---GC--AA---TTGGCTTGTCATTTGGTAGAACTACAGCT-CC----TAGTCCG--GATTTTGATGC-ATCCACACTT-A--------C-AATG---ACAGGTTTGTTCACA-TC-GAAGAA-AGT---A-A--GA-AC----TGGTG-CT-------------TCAGATAAAAGTCTC-TTGATTTC-CTTGAATGCACTTTCCTG-ACCCT--GGTCCCTGTGGAATGTTACATC-CT--TCCTCA----AG-----AG-AGTTC---TAATGGG--TTGTGTGATT-ATCGA-CATCTTTGG-TA-------GGT-----A---TTT-GGCAAA----GTAGTTGA--TAGTGCCTAGTAGCCGT-TC--GACTCC----TTTC-TTG-TCCTCTGGTGGCAGCATCT---------------TA-GTA-----ATCGC--T---TCAATTTTCCTGGGGTCGG---GTTTCACACC-TT----CACACGA--TA----------AAATGTGTCCAA----TGTATGTGACTT
gi|14 : agATGACCTCCTTGACCTT-TCTAAATGCATCAATCTGTGCAGT--GTCCC-AACAGAATTCTACATCTTT--T----G----AA-----AGCAGTGTACGCAAGGGG--CT-TGTAATT-TCTGcgg
gi|9 : CTCCTTGACCTT-TCTAAATGCACCAATCTGTGCAGT--G-TCCAAACAAAATTCTACATCTTT--T----G----AG-----AGCAGTGTACGCAAGGGG--CT-TGTAATT-TCTGA-AA-----GGTTA-------GGTGCA-AAT--TTT-GAT-AA----ATATGTCA--CCATGCCAAGCAGA-GTCTCT-AACTCA----GAT--TTGTT----TTGTGGGGGTTTCT---------------TCTACA-----ATCGC--T---GACACTTTGTCGGGATCTG---GTCC
gi|8 : aTTTACCTT-TTCAAAGGCCTCATCTTGTGCAGC--ATCCCAAATAAA-TTCGG-ATT-TGGAC----G----AT-----AACAGCATTCTCATGGGA--GC-TGTTGCT-TCTGACAA-----AC-TC-------GGTGCA-AA---TTT-TGTCAG----ATATGTGA--TCATGCCTAGCACA-GTTTCT-AACTCACTACGAT--TC--T----T--TGGAGGTTGCA---------------TCT-CATGGATGTTTT--T---GAC-CTTC-TTGGGGTCTG---GTTTAAAACC-GT------GCGAT--GA-GATT-----ATG--TGACCGA----AATAATCGA
gi|7 : tacttTCA----AAG--CATTCAT----CTATCTTCTGCTGGAAGATGTCC-TGG-GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCA-AAT-------GGAGTGTTGAAGGTAGTGA-GT--AGA-GAT---GATTCGTG--GGAGAGTCTGACCGTCCAATAC----CCGGAG-CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGG--C-ACCCGAGACTTGA-GGGAGAA-TATC-GTCCAACGTCCTCATCG--GA---TAATGTGGTCTCATG---ATGGCCTT-GTT---GAGTTGCATAGGATCC-AG
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GTTTTTGCAATCTTTTGGGTGCTGCTAACAGCAACTTCTTCCCAATAGACTCCAAGGGCTTGTGGTCACTGTCCACTTTCACTTGACGTCCATAAGTGTACTAGTGAAAACGCTCTAATCCAAATACAATCGCAAGTATCTCT
Unaligned ( gi|12 ): ATGCGCTGATAGATCTCTATACCAAATGGAAGTCTGAGCTAGCGGAAACGACCAATTGGAGTAATGAAGGTGGTGAGATACGATGATTCATTATCGAGTCTTATCTGCATGTAACCGGATTTTGCGT
Unaligned ( gi|13 ): ATAATGCTAGATAGAGTGACTAGCTGAGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTGGGCTT
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA
Alignments
lowQualScore : 333 4444 3333333 2 22 333 555555555 222 777777 222 22222222 2222 1 22 2 1 11111 11 11 2 2 1 1 222222 44444444 1 11111 11 55555555555555555 222 222 333333 11 1 22222 44444444444444444 111 222222 11 1 4444444444444 33333 1 44444444444444 2 111 1 22222 11 1 1 111 222222222222222 1111 2222222222 111 22222222 22222222 111 1111 111 1 1111 11 11 2222222222 11111 1111 111 11 33333333333333333333333333333333 66666666666666666666666666666666666666666 1111 33333333333333333 222222222222222 111 555555555555555555555555 44444444444444444444444444444444 111111 11111 111 222 222222 222 11 1 11 11 1111 55555555555555555555555555555555555 333333333 11 1 1 22222 11 33333333333 222 333 22222 1 2222 1 11 1 11 33333333 44444 111111111 11 11 11 333 2222 555555 22222 11 111 33333333333 1 1 2222222 333333333 1 2222
lowQualScore : 4 4 2 3 2 111 2222 1111111 0 3 2 2 3 3 77 555 000000000 1 000 888888 000 22 88888888 1111 1 5 11 2 0 5 66666 77 88 1 33 1 2 1 1 4 4 3 0 2 2 3 0 3 5 6 5 22 555555 7 6 1 99999999 7 2 3 11 0 1 22 55555 88 66666666666666666 333 4 3 4 1 333 6 888888 7 11 6 4 4 0 7 6 3 77777 66666666666666666 999 1 6 555555 1 11 0 1 4444444444444 55555 0 11111111111111 0 0 1 666 2 0 44444 22 1 0 0 1 3 4 777 8 1 999 1 3 333333333333333 6 4444 33 6666 77 1 0000000000 333 6 6 99 11111111 99 2 1 1 1 99999999 000 5 4444 6 2 888 444 6 0 1 2222 22 3 3 11 1 9999999999 1 88888 1 1 2 5555 111 1 11 8 11111111111111111111111111111111 88 1 3 8 22222222222222222222222222222222222222222 8 1 3 1 5 1 1 2222 0 0 1 0 8 4 44444444444444444 0 88 2 0 1 77 1 5 2 666666666666666 6 111 5 888 99 7 77 6 3 2 77 6 6 222222222222222222222222 0 55 4 11111111111111111111111111111111 3 7 555555 6 1 55555 0 111 333 1 4 111111 888 7 6 3 88 5 1 11 0 0 6 44 2222 66666666666666666666666666666666666 1 111111111 77 5 5 1 2 77777 88 1 6 11 88888888888 44 333 1 0 777 1 1 55555 0 1111 0 2 2 4 33 66 2 0 1 4 1 11 1 0 1 1 99 22222222 1 00000 3 888888888 11 0 00 11 00 444 1111 1 000000 6 33333 33 2 3 777 22222222222 0 1 1 0 3 0 2 2 3333333 3 3 222222222 1 0 0000 3 8 1 1
lowQualScore : . . . . . ... .... ....... . . . . . . .. ... ......... . ... ...... ... .. ........ .... . . .. . . . ..... .. .. . .. . . . . . . . . . . . . . . . . .. ...... . . . ........ . . . .. . . .. ..... .. ................. ... . . . . ... . ...... . .. . . . . . . . ..... ................. ... . . ...... . .. . . ............. ..... . .............. . . . ... . . ..... .. . . . . . . ... . . ... . . ............... . .... .. .... .. . .......... ... . . .. ........ .. . . . . ........ ... . .... . . ... ... . . . .... .. . . .. . .......... . ..... . . . .... ... . .. . ................................ .. . . . ......................................... . . . . . . . .... . . . . . . ................. . .. . . . .. . . . ............... . ... . ... .. . .. . . . .. . . ........................ . .. . ................................ . . ...... . . ..... . ... ... . . ...... ... . . . .. . . .. . . . .. .... ................................... . ......... .. . . . . ..... .. . . .. ........... .. ... . . ... . . ..... . .... . . . . .. .. . . . . . .. . . . . .. ........ . ..... . ......... .. . .. .. .. ... .... . ...... . ..... .. . . ... ........... . . . . . . . . ....... . . ......... . . .... . . . .
lowQualScore : 0 0 5 0 5 000 5555 5555555 0 0 5 5 0 0 55 000 555555555 0 555 000000 555 00 55555555 5555 0 5 55 5 5 5 55555 55 55 0 55 0 5 0 0 0 0 0 0 5 5 0 0 0 0 0 0 00 555555 3 7 0 77777777 3 3 7 77 7 0 00 77777 33 77777777777777777 333 7 7 0 0 333 7 333333 3 00 7 0 0 7 3 7 3 00000 00000000000000000 777 0 7 777777 0 00 0 0 0000000000000 00000 0 00000000000000 2 0 0 888 5 0 55555 55 0 0 0 0 2 6 444 0 0 444 0 7 888888888888888 7 2222 55 0000 77 0 5555555555 333 7 7 22 77777777 22 2 0 8 0 55555555 000 7 2222 7 5 555 000 7 8 0 7777 77 7 5 00 0 2222222222 8 44444 0 0 8 0000 888 0 00 0 22222222222222222222222222222222 88 0 2 0 00000000000000000000000000000000000000000 0 0 8 0 7 0 0 1111 7 4 7 1 7 3 33333333333333333 7 00 1 7 0 99 0 7 5 888888888888888 7 777 2 000 22 2 33 7 7 5 77 7 7 000000000000000000000000 3 88 0 00000000000000000000000000000000 2 3 555555 7 0 00000 6 666 444 0 4 888888 000 3 7 7 33 3 0 33 7 7 7 00 3333 00000000000000000000000000000000000 0 000000000 55 5 0 0 5 55555 55 0 7 33 77777777777 77 000 0 7 777 0 0 00000 0 2222 8 5 0 0 88 00 5 0 0 6 0 00 0 6 4 4 00 00000000 4 88888 2 000000000 00 8 55 00 88 222 2222 0 888888 5 22222 88 5 2 555 55555555555 0 0 0 0 5 2 5 5 8888888 0 2 888888888 2 0 0000 0 8 0 2
consensus : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGNTTTCGTNAACATNCTCTTNGCTGTCTGGACATGAAGCTCAGCTCCCTCAATCCATTCGACTGGGGATANCTGCGGACTTGA---GGTGGTACTGTGNNTAAAGTTCCCAATCCTGNTGGGCAAAGTCCCTGAATNCATGNACTNGCAATACTGCGGGTCCGTTATCCGACTAACNACTTCGNCAGGNACGCCATGTCTGGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGGCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACTTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATTGA-GTCCATCAATAAT-----GACAAGTTCATCNCTATGGTTCCAAAATTCTATGAGTGAGNAGGG--ACA----CTGAGC--CATG-TTTC---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GC---NAN-ACTA-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA--A--C-AGAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA---GC--TA-GGCTGGCTT----TTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TAAA----GACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANCCTG----TGCAGCGTCCCAAACAAAATTCTGCATC-TT----CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA---A----GNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCAN-AGTC-TCTAA-CTCG--CTA-GATTC--TTTGT-----GGAGGTTGCNTC------T-CAT-GATC-------G---CT---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA--GTTT-TCTGTATTCAGCTTAATGCC-TTTCGAACTCTGAGACGCTGCTGCNCTTTGCNTTNNCGNGCGGACCNCGCGAAGAGGGCGCGGGTGCCATTGCTCCTGCCCGGGTGCTGATACCGTAGACTAGGATATC---GTCAA---CTACGGCGAGACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGGTGGT-AGNTA-A-G-A---TG--ATTCTTCCGA-AAGCTTGA-C-GTCCAAT----ANCCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC--NCCNGC-A-AGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGNTCCTTGGGATCCCAGATCAT
Reference ( family-4234 ) : NAAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA---CAGTTCTCTCAATCCATTCGACTGGGGATANCTGCGGACTTGACTTGGTGGTACTGTGNNTAAAGTTCCCAATNCTGNTGGGCAAAGTCCCTGAATNCATGNNCTCGNAATACTGCGGGTCCGTTATCCGACTAACNACTTCGNCAGGNACGCCATGTCTGGCGAACGNCTCCAGTAGNTTAGTGATTACACGCTGGCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACTTCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCCTCGTGNNTAATTNAAGTCCATNAATGATGTTAGGACAAATTCATCCCTGNGGTTCCAAAACTCTNTGANNGNGNGNGG--ACA----TTGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTNAANTGTCGGNNCAANANAN-TTT-CGNGACAGAGTATCTGCGAC--------CGGAATTTGCTTA-----CC-GGTACATA-----GC---GAN-ACTA-GGTCATANC-GCTGAAGTTG-TA---A-AA-CATTCTCTGNAG-C-TNGGAGGGGCCGC--GAA-GNGTGG-CTTCTTNAAAA---T-GGA--A--C-AGAGGTT-TGT----GATCAGTTTGNACCGTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--GTC--CGAANACAATAGCANA-C------AT---TT-CCTT----CTCTAT-CTGGGCGTAACTGGATTTC-G-C-TCGGNGTN---AGTGCCCTTTGATGC--ANAA---GC--TA-GGTTGGCTT----TCTTGCANTAANGCGGCN---CCAA--GNCCAT--ACTTTGAAGCA-TC-GCACT-G-AAG----ANTAA-TG---AN---CTT-TTCAGGGTCAAAA-TA-TGC-TAAA----GACG---TG--------GCG-CT-----TTAG-TAANGACCTCCTTGACCTT-TCTAAATGCNCCANCCTG----TGCAGCGTCCCAAATAAAATTCTACATC-TT----CG-AG-----AGCAGCGTACGCANGGGG--CTTGTNATT-TCTGACA---A----GNTA---GGTGCA-AA---TTTGG-TCAAA--TATGTGATC-GTGC-CTAGCAN-AGTC-TCTAA-CTCA--CTA-GATTCG-TTTGT-----GGAGGTCGCTTC------T-CATGGATC-------G---CT---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-TTTAGAGGT--TAG--TANGTGACCAAAGTATTTGACCT--GTGCTAACTGNCTACTTGCCA--GTTTTTCTGNATTTAGCCTGATGCC-CTTCGAACTCTGANACGCTGTTGCNCTTTGCNTTNNCGNGCGGNNCNCGCGAAGAGGGCGCGGGTGCCATTGCTCCNGCCCGGGTGCTNATACCGTAGACNAGGACGTCTCANTCAAAAGCTNCGGCGAGACGANGCCCGGTAAAATGNCNTCA-----AA-GCATTCGT----CTATCTTNCGCCGAAATTCGTCCTGG--GATGACTTCA-ANCCAAACGGNAATC--TNAAATACCTATACCT-NCCAAAT-------GGGGTGTTGAAGGT--T-AGGTA-A-G-A---TG--ATTCTTCCGA-NAGCCTGA-C-GTCCAAT----ANCC---G--CGGGC----GTCTAG--TTTTGGTGAAGAA---CTTGGC--TNCNG--A-AGTTGA-GGNAGNA-CATCTTCCAGGGTTCTCATGG---GA--TAATGTGGTC-CAC---G-ATAGCCTT-GTT---GAGTTCCNTGGGATCCCAGATCAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA---CAGTTCTCTCAAT----TTGACTGGAGATACCTG-GGACTTGA------GGTACTGTGGTTAAAATTC--AA--CTGATGGGCAAAGTTCCTAAATTCATGA-CTAG-AATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTGGCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACTTCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|1 : ggtgaaagacctatgttTTTCGCTTCGTGACTAATTG--GTC-ATAAATG-------GACAA-TTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGG--ACA----TTGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGG-CAA-ATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA-----CCAGGGACATGT----GC---GAG-ACTAAGGGAATATC-TCTGAAGCTG-CA---A-AATCATACGCTGCAATC-TTGCAGGTGCAG----AATGTATGGACTTCTGCATAA---T-TGAC-A--CTAAGGGTT-TGT----GATCAGTTTGAACTGTAAT-ATTCCTA-----CC--ATAAATGTACTG--GTGG-A-AGTACG-G-GC--ATC--CAAACACAATAGCGTA-C------AT---TT-CTTT----TTCGAT-CTGGGCATAATTG-ATTTC-A-C-TAGGAGTC---AGTGCC-TTAGATGC--ATAACACAC--T--GGTTTGCCA----TCCTGCAGTAAGGTGGCT---CCA---GACCAT--GCTTTGAAGCA-TC--TACT-GTAAT----ACTA--TG---TA---CTT-CTGTGGATCAAAA-TA-TGA-TAGAATGAGGCT---TG--------GTGACC-----TTA--TAAGAATATATTTGACCTT-TTCAAATGCCTCATCTTG----TGCAGCATCCCAAATAAA-CTCGG-ATT-TGGA--CG-AT-----AACAGCATTCTCATGGAA--GCTGTCGCT-TCTGACA---A----ACTC---GGTGCA-AA---TTTTG-CCAGA--TATGTGATC-ATGC-CTAGCAC-AGTT-TCTAA-CTCA--CTATGATTC---TT-T-----GAAGGTTGCATC------T-CATGGATG-------G---CTTT-GAC-CTTC-T-T--GGGGTCTG-GTTTTACACC-TT--GCGAT--GAGATTATGTGACCGAAATAATCAACCTCAGT-TTGAC---CTAC-TGCTATTTTTTTTCTGAATTTAGCTTGATACC-CTT----CTC---------GCTGCAT----CGTTCTAATGCAG--CACGCAAA-------TGGGTGCCA-TG-TTCTACCTTAGT-CT--TACCATAGACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA-----AA-GCATTCGT----CAATTTTACGCTGAAATTCATCCTGG--GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA-------GGGGTGTTGAAGG---T-AGTCA-ATG-AGCTTG--ACTCTTCTGA-AAGCTTGAGG-GTCCAGT----AACCACTA--CGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTGC--TTCAGC-A-AGTTGA-GGTAGCA-CATCATTGAGGGTTTTCATGG---GA--TAATGTGG-G-CGC---GAATAGCCTT-GTT---TAATT-CTTGGGTTCCggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|10 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaTCTGTATAA---T-CGA--AATC-AGAGGTT-TGT----GATCAGTTTGGACTGGGA---------------------AATGT-CTACCATAA-ATAG--TG---AC--ATC--CAAACACAATGGCATA-CACTAGTAT---TT-CTTTAGAACACTAT-TTGGGCATCACT-GATTTC-A-C-TACGCGTC---AAT-TCTTTTGATGtt
gi|11 : GGTGCTGC--TAA-CAGCAA-CTTCTTCCCAA---T-AGACTC--C-AAGGGCT-TGT----GGTCACTGTCCACTTTCAC-TTGACGT-----CC--ATAAGTGTACTA--GTGA-A-AA--CG-CT-CTAATC--CAAATACAATCGCAAG-T------AT---CT-C
gi|12 : gtttttgcaatcttttgCCAAATGGAAGTC--TGAGCTAGCGGAAACG-ACCAATT-------GGAGTAATGAAGGTGGTGAGATA-C-G-A---TG--ATTCt
gi|13 : atgcgctgatagatctctataATAATG---CTAGATAGAGTGACTAGCTG------AGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTG-GGCTTattatcgagtcttatctgcatgtaaccggattttgcgt
gi|14 : ATGACCTCCTTGACCTT-TCTAAATGCATCAATCTG----TGCAGTGTCCC-AACAGAATTCTACATCTTT----TG-AA-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTG
gi|2 : TCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGG
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggTTTCACTTT-TGAGTA--TGATG-CCATCAATAAT----CGAC-AGCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGG--ACAATCCCTACGA--CA----TTC---AGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGA-CTCAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAG--AGATCTTGG--AAATTGTCTGTT--ACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTAC----CC-GGTACATA-----GCTAACAT-ACTA-GGTCATAAC-ACTGAACTTG-TA---ATAA-CATTCTCTGTAG-C-TAGGAGGGGCTAC--AAA-GAGTGG-CTTCTTGAAAA---TAGGG--A--CAAGAGGCT-TAT----GGTCAGTTTCTACTCTGAC-TTTGTGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAAAACTATAGCAAA-C------AT---TT-CCTT----CTCTAT-CTGTGCGTAACTGGATTTC-A-C-TCTGTGTG---AG-GCTCTTTGATGC--AAAA---GC--TAGGGCTGACTT----TCTTGCATTAATGTGGCA---CCAA--GCCCAT--ATTTTGAAGCG-TC-GCATT-G-AAG----AGTAG-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC--AAA----GGCA---TG--------AT--CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCAATCTG----TGCAGTGTTCCAAACAAAATTCTACATC-TT----TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGA-A---A----GGTA---GGTGCA-AA---TTTGA-TAAAA--TAGTTCACC-ATGC-CAAGCAG-AGTC-TCTAA-CTC-----A-GATTTG-TTTGT-----GGGGGTTTCTTC------TACA---ATC-------G---CT---GACACTTTGT-C--GGGATCTG-GTCCTACACC-CTTAGAGGT--TAG--TAAATGACCAAAGTATTTGACCT--TTG-TAACT-CCAACTT-CAA--GTTTGTCTTTATTCAGTTTAATGCCTTTTCGAtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaactACTAGGATATC---GTCAA---CTAGGGCAA--CGACGCCTTCTAG---GTCTTCA-----TA-ACATTCGT----CTATCTTTCTCTGGAATATGTCCTGA--GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCAAA--------GGTGTGTTAAAAGTGATAAGGTA-A-G-A---GG--ATGCTTCCGA-TAACTTGA-TAGTCCAAT----AGCC---ACTCTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGGCTTTTTGA--A-AGCTGA-GGTAGGA-CATCTTACAATGTTTTCATTG---AG--TAGTAGGGTCTCAG---T-ATTGCCTT-GTT---TAGGTCTTTAGGGTCgtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|3 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacTCAAGTCCATCAATAATGTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGAGGGT-AGGGGTCACA-----TGA-CTTCATA-TTTCAGGAGGCCAGCCATTCAGAATtagacat
gi|3 : ttgtgacctttacgtaGGT-AACTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCT-GGTATATAAATGAGC---AATCAAAA-GGTCATAGTTGCTTGAGTTGATATGGC-AA-CATTCTTTGGAG-C-CGGGAGAAGGCGCATGAA-GGGT---TTTTTTAAAGAGTCT-GGA--A--C-AGAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG---TGATA-AG--CGCTTGC--ATCGCCCAAAACAATTGCAAAGT------ATGCGTC-ACTT----CTCTATTCTGGGCGTATC-GCATATC-GGC-TCGGAGTTCACAGAGATTTTTGAGGC--ATAAT--GCAATA-GGCTCGCCA----TTCTGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAATC-A-ACTTG-GAGTACTATTAA-TGCGTAG---CT-------GGTCAAAAATA--GCATAAG----AACG---TGACACTAGGGCG-CTAGCGGTTAG-AAATG-CTTCCGTAACCTCGTCAAAAAGCTCATTTCTG----GGGTTCATCCCATGTAAATTTGTGCATT-TC----CATAGTGTTAAGGAGTCTACGCATGGGGAACTGGTTATCGTCTAGCACATA----ATTGCGGGGTGCACAACACTTTAGCTCAAGCTTA-GAGGTCAGTTCGCGAGAAGCAGTC-TGTGAGCTCGGGCTG---TTGC-TTTGA-----GGAGGTCACTCCGGTGGCT-CATTGGTCTCGAATAG---CTCAGGCCACTTT-TTC--GGTGTGGGTGTTCGATTCCACTTAGAGGTCGTGG--AATGTGACCAAAATACTTGACCT--GTGCTAACTGCTTACTTGCCA--GTTT---TGTAT---GCCTAATG-C-TTTTGAACTCTGAGACGCTGTTG-TCTTTGCTTTAGCGAA-GGACCTTGCGAAGAGGGCGCTGAT--CATTGCTCCTGCTCGGGTGTTGATACCG--AACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTCTT-CTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCAAATGGCGTTCGGGGTATTGAAAGT--T-GGTTA-A-ATA---TGATATTCCATCGATAAG---GA-T-GTCCAATAGAGACCC---A--CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGC--ACCTGTTA-AGTTGCTGGAAGGAGCATCTTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGA-ATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|4 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac---TT-CCTT----TTCAAT-CTGTGCGTATCATGTTTCC-G-CATC--AGTA---AGTGCCCTC-GACGC--ATAA---GC--AA---TTGGCTTGTCATTTGGTAGAACTACAGCT---CCTA--GTCCGG--ATTTTGATGCA-TCCACACT-T-A--------CAA-TG---ACAGGTTTGTTCACA-TCGAAG-AA-AG--TAAG----AAC----TG--------GTG-CT-----TCAGATAAAAGTCTC-TTGATTTC-CTTGAATGCACTTTCCTGACCCTG----GTCCCTG-TGGAATGTTACATC-CTTCCTCA-AG-----AG-AG--TTCTAATGGGT--TGTGTGATT-ATCGACA---TCTTTGGTA---GGT-----A---TTTGG-CAAAG--TAGTTGATA-GTGC-CTAG--T-AGCCGTTCGA-CTC---CT----TTC---TTGTCCTCTGGTGGCAGCATC------T-TAGTAATC-------G---CT---T-CAATTT-T-CCTGGGGTCGG-GTTTCACACC-TTCACACGA--TAA--AATGTGTCCAATGTATGTGACTT--t
gi|5 : ag-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA-----CC-GGTACATA-----GC---TAA-ATTATGGTCATAAC-A-TGAACTTG-TA---A-AA--ATTCTCTGTAG-CCTAGGAGGGGCTGC--AAA-GAGTGG-CTTCTTGAAAA---TAGGA--A--C-AAAGGCT-TA-----GGTCAGTTCCTACTCT-AC-TTTGTGA-----CGTGGTAAATGTACTG--ATGA-A-AG--CG-TTGT--GCT--CGAAAACTATAGCAAA--------AT---TTCCCTT----CTCTAT-CTGTGCGATACTGGATTTCAA-C-TCTGT-TG---AG-ACTCTTTGATGCAAATAA---GC--TATGGGTGACTT----CTTTGCATTAATGTGGCA---CCAA--GCCCAT--ACTTTGAAGCG-TC-GC-TT-G-AAG----AGTAAGTG---AC---CTT-TTCAGGGTCAGAA-CATTGC-TATA----GACAGTTTG--------AC--TT-----TTAG-Tcgg
gi|6 : GGAGTTGCACGGTACTCCATGAGCGAAATATAAACATCAGAATTG-------CCTTCCTCGGCTTTCTTGAACATGTTTTTGATTGTTTGGACATAAAGCTCAGCTTCC-----CCATTCGATTGAGGATAAC-GCGGACTTGA---GGTAGTA---TGTATAAAGT-CCCAATCCTGT---GCAAAGTCCTTGAATGT-TGCACTCGCAA-ATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACgttaaat
gi|7 : ggtgacagaccaaccccatcgataTCA-----AA-GCATTCAT----CTATCTTCTGCTGGAAGATGTCCTGG--GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCAAAT-------GGAGTGTTGAAGGTAGT-GAGTAGA-G-A---TG--ATTCGTGGGA-GAGTCTGACC-GTCCAAT----ACCCGGAG--CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGGC--ACCCG--AGACTTGA-GGGAGAA-TATCGTCCAACGTCCTCATCG---GA--TAATGTGGTCTCAT---G-ATGGCCTT-GTT---GAGTTGCATAGGATCCatagatttgaaa
gi|8 : TTTACCTT-TTCAAAGGCCTCATCTTG----TGCAGCATCCCAAATAAA-TTCGG-ATT-TGGA--CG-AT-----AACAGCATTCTCATGGGA--GCTGTTGCT-TCTGACA---A----ACTC---GGTGCA-AA---TTTTG-TCAGA--TATGTGATC-ATGC-CTAGCAC-AGTT-TCTAA-CTCA--CTACGATTC--TT--T-----GGAGGTTGCATC------T-CATGGAT--------GTTTTT---GAC-CTTC-T-T--GGGGTCTG-GTTTAAAACC-GT--GCGAT--GAGATTATGTGACCGAAATAATCGAag
gi|9 : tacttCTCCTTGACCTT-TCTAAATGCACCAATCTG----TGCAGTGT-CCAAACAAAATTCTACATCTTT----TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGAAA---G----GTTA---GGTGCA-AA---TTTTG-ATAAA--TATGTCACC-ATGC-CAAGCAG-AGTC-TCTAA-CTC-----A-GATTTGTTTTGT-----GGGGGTTTCTTC------TACA---ATC-------G---CT---GACACTTTGT-C--GGGATCTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 2222 3333333 1 11 2222222222222222222222 33333333 3333333333 1111 2222222222 22222 444444 3333333 22222 1 1 2 1 22222 22 1 1 1 1 444444444 11 1 1 4444444444444 222222222 222 333333 1 22222 2222 11 2222 111111 1 1 33333333 22222222 3333333333333 111 111 1 22222 11 1 1 111 222222222222 1111 11111 1111111 22222222 111 1111 11 11 1111111 111 11 22222222222 3333 1111 11 11 111 22222222222222222222222222 66666666666666666666666666666666666666666 1111 2222222222222222222222 222222222222 111 4444444 1111 222222 44444444444444444444444444 111111 111111 11111 111 111 222222 111 222 22 11 777777777777777777777777777777777777777777777777777777777777777777777 1 3333333333333 2222 222 222 222 22222 1 2222 1 11 111 11 33333333 1 11 333 1111 444444 2222 11 111 11 11 1 1 2222222 222222 1 1111
lowQualScore : 1 1 1 1 1 222 3333 1111111 5 1 6 1 44 1 00 3333333333333333333333 3 0 0 1 999 7 66666666 22 6666666666 8888 3 0 1 6666666666 7 0 77777 0 666666 1 6666 1 11 3 0 0 1111111 66666 5 5 0 66 5 77777 2 4 3 2 77 1 1 2 5 1 1 1 5 1 5 5 1 7 7 6 333333333 99 1 5 1 3 5555555555555 777777777 1 3 1 333 6 888888 7 1 7 6 1 1 0 0 7 0 6 3 77777 3333 88 4444 6 88 444444 0 0 0 88 66666666 99999999 5555555555555 0 111 1 666 1 0 44444 22 0 0 0 1 1 3 222 8 999 1 1 000000000000 6 6 6 4444 22 1 5 6 1 66666 999 4 6 99 5555555 99 2 1 1 99999999 000 6 4444 6 1 44 44 6 1 3333333 777 3 11 33333333333 4444 0 1 5555 6 11 1 11 8 8 000 44444444444444444444444444 9999999 8 22222222222222222222222222222222222222222 8 1 3 2 5 4 555 2222 0 0 5 0 1 1 0 5555555555555555555555 0 2 1 0 1 77 1 5 2 666666666666 6 111 1 888 99 7 77 6 1 2 77 6 6 7777777 1111 444444 0 1 1 11111111111111111111111111 111111 3 7 555555 6 1 44444 0 111 666 1 111111 999 7 6 1 333 00 11 6 222222222222222222222222222222222222222222222222222222222222222222222 6 2 0 77 6666666666666 6 7777 333 3 333 0 333 1 55555 0 1111 0 2 1 0 11 333 1 000 1 11 1 0 1 1 99 22222222 1 8 8 6 1 99 8 0 00 11 77 444 8888 888888 1 1111 33 2 3 777 11 1 66 0 1 0 0 1 0 1 1 3333333 1 3 9 888888 1 0 8888 33 0 1 1
lowQualScore : . . . . . ... .... ....... . . . . .. . .. ...................... . . . . ... . ........ .. .......... .... . . . .......... . . ..... . ...... . .... . .. . . . ....... ..... . . . .. . ..... . . . . .. . . . . . . . . . . . . . . . ......... .. . . . . ............. ......... . . . ... . ...... . . . . . . . . . . . . ..... .... .. .... . .. ...... . . . .. ........ ........ ............. . ... . ... . . ..... .. . . . . . . ... . ... . . ............ . . . .... .. . . . . ..... ... . . .. ....... .. . . . ........ ... . .... . . .. .. . . ....... ... . .. ........... .... . . .... . .. . .. . . ... .......................... ....... . ......................................... . . . . . . ... .... . . . . . . . ...................... . . . . . .. . . . ............ . ... . ... .. . .. . . . .. . . ....... .... ...... . . . .......................... ...... . . ...... . . ..... . ... ... . ...... ... . . . ... .. .. . ..................................................................... . . . .. ............. . .... ... . ... . ... . ..... . .... . . . . .. ... . ... . .. . . . . .. ........ . . . . . .. . . .. .. .. ... .... ...... . .... .. . . ... .. . .. . . . . . . . . ....... . . . ...... . . .... .. . . .
lowQualScore : 0 0 0 0 0 000 5555 5555555 0 0 7 0 77 0 33 0000000000000000000000 7 7 7 0 333 3 00000000 00 3333333333 7777 7 7 0 3333333333 3 7 77777 7 777777 0 0000 0 33 7 7 7 5555555 55555 5 0 0 55 5 00000 5 0 0 5 55 0 0 5 0 0 0 0 5 0 0 0 0 3 3 7 000000000 33 0 0 0 3 7777777777777 777777777 0 7 0 333 7 333333 3 0 3 7 0 0 7 7 3 7 7 3 00000 5555 55 0000 7 33 777777 0 0 2 22 22222222 00000000 5555555555555 2 000 2 888 0 0 55555 55 8 0 0 2 0 8 444 0 444 0 0 555555555555 7 7 7 2222 00 0 2 7 0 77777 888 2 7 22 7777777 22 2 0 0 55555555 000 7 2222 7 0 33 00 7 0 7777777 888 5 00 44444444444 0000 6 0 4444 0 00 0 00 0 0 444 44444444444444444444444444 4444444 0 00000000000000000000000000000000000000000 0 0 8 5 7 9 999 1111 7 4 0 1 7 4 7 7777777777777777777777 7 7 0 7 0 99 0 7 5 888888888888 7 777 0 000 22 2 33 7 0 5 77 7 7 5555555 2222 000000 3 0 0 77777777777777777777777777 888888 2 3 555555 7 0 66666 6 666 888 0 888888 000 3 7 0 333 77 00 7 000000000000000000000000000000000000000000000000000000000000000000000 7 0 7 33 7777777777777 7 0000 333 7 000 7 333 0 00000 0 2222 8 5 0 8 00 444 0 444 0 00 0 6 4 4 00 00000000 4 0 0 0 0 00 0 8 55 22 22 222 5555 888888 0 2222 88 5 2 555 00 0 55 0 0 2 0 0 2 0 0 2222222 0 2 2 000000 2 0 5555 55 2 2 2
consensus : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATCCGTTCGATTGAGGATANCTGCGGACTTGAGGTAGTAC-GTGNNTAAAATTC--AAT-CTGTT-GGCAAAGTCCNTAAATNC-TG-ACTAG-AATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAAC--ACT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTGATGA-AAG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TTCC-TT----CTCTAT-CTGNGCGTAACTGGATTTCG-C-TCNGNGTN---AGTGCCCTTTGATGCA--TAA-GC--TA-GG-CTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-T-CGCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCAN-AGTC-TCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-C-G---ATC-------GC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT----CTC-GAG-----GCTG-NCTTT-C-TTNN-GAACGGACCTCGCGAAGA-----C-GGT-CCAT--TGCTCCTGCTCTAGT-CTGATACCG-ANACTAGGATATC---GTCAA---CTACGGCGAGACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AAATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
Reference ( family-4234 ) : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGNTTTCGTNAACATNCTCTTNGCTGTCTGGACATGAAGCTCAGCTCCCTCAATCCATTCGACTGGGGATANCTGCGGACTTGAGGTGGTACTGTGNNTAAAGTTCCCAATCCTGNTGGGCAAAGTCCCTGAATNCATGNACTNGCAATACTGCGGGTCCGTTATCCGACTAACNACTTCGNCAGGNACGCCATGTCTGGCGAACGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATTGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGAGTGAGNAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAN---ACT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTGATGA-AAG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TTCC-TT----CTCTAT-CTGNGCGTAACTGGATTTCG-C-TCNGNGTN---AGTGCCCTTTGATGCA--TAA-GC--TA-GG-CTGGCTT----TTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-T-CGCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCAN-AGTC-TCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-T-G---ATC-------GC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTTCGAACTCTGAGACGCTGCTGCNCTTTGCNTTNNCGNGCGGACCNCGCGAAGAGGGCGCGGGTGCCAT--TGCTCCTGCCCGGGTGCTGATACCGTAGACTAGGATATC---GTCAA---CTACGGCGAGACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AGNTA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---NCCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCNG-CAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGNTCCTTGGGATCCCAGATCAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA---CAGTTCTCTCAAT----TTGACTGGAGATACCTG-GGACTTGAGGT---ACTGTGGTTAAAATTC--AA--CTGATGGGCAAAGTTCCTAAATTCATG-ACTAG-AATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|1 : ggtgaaagacctatgttTTTCGCTTCGTGACTAATTG-GTC-ATAAATG---G-----ACAA-TTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGGA-CA----T-TGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGG-CAA-ATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA-----CCAGGGACATGT----GCGAG---ACTAA-GGGAATATC-TCTGAAGCTG-CA---A-AATCATACGCTGCAATC-TTGCAGGTGC--A--GAATGTATGGACTTCTGCATAA---T-TGACA--CTA-AGGGTT-TGT----GATCAGTTTGAACTGTAAT-ATTCCTA-----CC--ATAAATGTACTGGTGG-AAGTACG--GGC--ATC--CAAACACAATAGCGTA-C------AT---TTCT-TT----TTCGAT-CTGGGCATAATT-GATTTCA-C-TAGGAGTC---AGTG-CCTTAGATGCA--TAA-----CA-CA-CTGGTTTGCCATCCTGCAGTAAGGTGGCT---CC-A--GACCAT--GCTTTGAAGCA-T-C-TACT-GTAAT----ACT-A-TG---TA---CTT-CTGTGGATCAAAA-TA-TGA-TAGAATGAGGCT---TG--------GTGACC-----TTA--TAAGAATATATTTGACCTT-TTCAAATGCCTCATC-TTG----TGCAGCATCCCAAAT-AAACTC-GGA----T--TTGGACG-AT-----AACAGCATTCTCATGGAA--GCTGTCGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-CCAGA--TATGTGATC-ATGC-CTAGCAC-AGTT-TCTAA-CTCA--CTATGATT--C-TT------TGAAGGTTGCATC------TCA-TGG---ATG-------GCTTT---GAC-CTTC-T-T--GGGGTCTG-GTTTTACACC-TT--GCGAT--GAGATTATGTGACCGAAATAATCAACCTCAGT-TTGA---CCTAC-TGCTATTTTTTT-TCTGAATTTAGCTTGATACCCTT----CTC---------GCTGCAT----CGTTCTAATGCAG--CACGCAAA-------TGGGTGCCA---TG-TTCTACCTTAGT-CT--TACCATAGACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA-----AA-GCATTCGT----CAATTTTACGCTGAAATTCATCCTGG--GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA-------GGGGTGTTGAAGG-TAG-T-CAATG-AGCTTGACTCTTCTGA-AAGCTTGAGG-GTCCAGTA---ACCACTA--CGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTGC-TTCAG-CAAGTTGA-GGTAGCA-CATCATTGAGGGTTTTCATGG---GA--TAATGTGG--GCGC---GAATAGCCTT-GTT---TA-ATTCTTGGGTTCCggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|10 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaTCTGTATAA---T-CGA-AATC-A-GAGGTT-TGT----GATCAGTTTGGACTGGGAA-ATGTCTA-----CC--ATAAA--TAGTGA---------------C--ATC--CAAACACAATGGCATA-CACTAGTAT---TTCT-TTAGAACACTAT-TTGGGCATCACT-GATTTCA-C-TACGCGTC---AAT-TCTTTTGATGtt
gi|11 : GGTGCTGC--TAA-CAGCAA-CTTCTTCCCAA---T-AGA-CTCC-A-AGGGCT-TGT----GGTCACTGTCCACTTTCAC-TTGACGT-----CC--ATAAGTGTACTAGTGA-AAA--CG-CT-CTAATC--CAAATACAATCGCAAG-T------AT---CTC
gi|12 : gtttttgcaatcttttgATGCG--CTGA--TAGATCTCTA-TACCAAATGGAAGTC--TGAGCTAGCGGAAACG-ACCAATT-------GGAGTAATGAAGG-TGG-TGAGATA-CGA-TGATTCt
gi|13 : ATAATG---CTAGATAGAGTGACTAGCTG------AGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTG-GGCTTattatcgagtcttatctgcatgtaaccggattttgcgt
gi|14 : ATGACCTCCTTGACCTT-TCTAAATGCATCAAT-CTG----TGCAGTGTCCC-AACAGAATTCTACA----TCTTT---TG-AA-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTG
gi|2 : GATTTCTCCAATATCGGCTTAGCAACCTGAACATA---CTT--TTCTGCCAATCCGTTAGATTGAGGATGTCTACGG----GAGG-AGTGCAATGAGCAAAATC----ATACTGTTTAGCAAAGTCTGCAAATCC-TGGG--AGGAATATTG-GGG-CCATTGTC--GC--ACAACCTTAGTGGGGATACCGAATTTCGCAAATAA-------AGCTT-----TT-CA-GTTGTACTTTTGGTAT-CAC-----GAAAGCTGTACAATGGTCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGG
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttaTTTCACTTT-TGAGTA--TGATGCCATCAATAATCG-----ACA-GCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGGA-CAATCCC-TACGA--CAT---T-C---AGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGACT-CAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAGA--GATCTTGG--AAATTGTCTGT-TA-CAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTA-----CCCGGTACATA-----GCTAACATACT-A-GGTCATAAC-ACTGAACTTG-TA---ATAA-CATTCTCTGTAG-C-TAGGAGGGGCTAC--AAA-GAGTGG-CTTCTTGAAAA---TAGGG-A--C-AAGAGGCT-TAT----GGTCAGTTTCTACTCTGAC-TTTGTGA-----CC--GTAAATGTACTGATGA-AAG--CG-TTGC--ATC--CGAAAACTATAGCAAA-C------AT---TTCC-TT----CTCTAT-CTGTGCGTAACTGGATTTCA-C-TCTGTGTG---AG-GCTCTTTGATGCA--AAA-GC--TA-GGGCTGACTT----TCTTGCATTAATGTGGCA---CCAA--GCCCAT--ATTTTGAAGCG-T-CGCATT-G-AAG----AGTAG-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC--A----AAGGCA---TG--------AT--CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGTTCCAAACAAAATTCTACA----TC-TT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGA-A----AGGTA---GGTGCA-AA---TTTGA-TAAAA--TAGTTCACC-ATGC-CAAGCAG-AGTC-TCTAA-CTC-----A-GATT--TGTT----TGTGGGGGTTTCTTC------T-A-C-A---ATC-------GC--T---GACACTTTGT-C--GGGATCTG-GTCCTACACC-CTTAGAGGT--TAG--TAAATGACCAAAGTATTTGACCT--TTG-TAACT-CCAACTT-CAA---GTTTGTCTTTATTCAGTTTAATGCCTTT-----TC-GAG-------TGACCTTT----TGA-GAACAGACCTC---AAGA---------TTCGATCATGCTCTT-CTCTAGTTC-GA--CCA-ACACTAGGATATC---GTCAA---CTAGGGCAA--CGACGCCTTCTAG---GTCTTCA-----TA-ACATTCGT----CTATCTTTCTCTGGAATATGTCCTGA--GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCAAA--------GGTGTGTTAAAAG-TGA-TAAGGTA-AGA-GGATGCTTCCGA-TAACTTGA-TAGTCCAATA---GCC---ACTCTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGGCTTTTTG-AAAGCTGA-GGTAGGA-CATCTTACAATGTTTTCATTG---AG--TAGTAGGGTCTCAG---T-ATTGCCTT-GTT---TAGGTCTTTAGGGTCtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|3 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaactATCAAGTCCATCAATAAT-GTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGA--GGGTAGGGGTCA----CATGA-CTTCATATTT-CAGGAGGCCAGCCATTCAGAATtagacat
gi|3 : ttgtgacctttacgtGGTAA-CTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCT-GGTATATAAATGAGCAATC--AAA-A-GGTCATAGTTGCTTGAGTTGATATGGC-AA-CATTCTTTGGAG-C-CGGGAGAAGGCGCATGAA-GGGT---TTTTTTAAAGAGTCT-GGA-A--C-A-GAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG-TGATAAG--CGCTTGC--ATCGCCCAAAACAATTGCAAAGT------ATGCGTCAC-TT----CTCTATTCTGGGCGTATC-GCATATCGGC-TCGGAGTTCACAGAGATTTTTGAGGCA--TAATGCAATA-GG-CTCGCCA----TTCTGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAAT-CA-ACTTG-GAGTACTATTAA-TGCGTAG---CT-------GGTCAAAAATA--GCATA----AGAACG---TGACACTAGGGCG-CTAGCGGTTAG-AAATG-CTTCCGTAACCTCGTCAAAAAGC-TCATTTCTG----GGGTTCATCCCATGTAAATTTGTGCA----TT-TC---CATAGTGTTAAGGAGTCTACGCATGGGGAACTGGTTATCGTCTAGCACAT-AATTGCGGGGTGCACAACACTTTAGCTCAAGCTTA-GAGGTCAGTTCGCGAGAAGCAGTC-TGTGAGCTCGGGCT--GTTG--C-TT----TGAGGAGGTCACTCCGGTGGCTCA-TTG---GTCTCGAATAGC--TCAGGCCACTTT-TTC--GGTGTGGGTGTTCGATTCCACTTAGAGGTCGTGGA--ATGTGACCAAAATACTTGACCT--GTGCTAACTGCTTACTTGCCA---GTTT---TGTAT---GCCTAATG-CTTTTGAACTCTGAGACGCTGTTG-TCTTTGCTTTAGCGAA-GGACCTTGCGAAGAGGGCGCTGAT--CAT--TGCTCCTGCTCGGGTGTTGATACCG--AACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTCTT-CTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCAAATGGCGTTCGGGGTATTGAAAGTTGGTT-AAATA-TGA-T-ATTCCATCGATAAG---GA-T-GTCCAATAGAGACCC--A--CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGC-ACCTGTTAAGTTGCTGGAAGGAGCATCTTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGA-ATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|4 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac---TTCC-TT----TTCAAT-CTGTGCGTATCATGTTTCCG-CATCAG--TA---AGTGCCCTC-GACGCA--TAA-GC--AA----TTGGCTTGTCATTTGGTAGAACTACAGCT---CCTA--GTCCGG--ATTTTGATGCA-TCCACACT-T-A--------CAA-TG---ACAGGTTTGTTCA-CATCGAAG-AA-AG--TA----AGAAC----TG--------GTG-CT-----TCAGATAAAAGTCT-CTTGATTTC-CTTGAATGCACTTTC-CTGACCCTG----GTCCC-TGTGGAATGTTACATCCTTC-CT---CA-AG-----AG-A--GTTCTAATGGGT--TGTGTGATT-ATCGACATCTTTGGTA---GGT-----A---TTTGG-CAAAG--TAGTTGATA-GTGC-CTAG--T-AGCCGTTCGA-CTC---CT----TT--C-TTGTCCTCTGGTGGCAGCATC------TTAGT-A---ATC-------GC--T---T-CAATTT-T-CCTGGGGTCGG-GTTTCACACC-TTCACACGA--TAAA--ATGTGTCCAATGTATGTGACTT--t
gi|5 : ag-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA-----CC-GGTACATA-----GCTAA---ATT-ATGGTCATAAC-A-TGAACTTG-TA---A-AA--ATTCTCTGTAG-CCTAGGAGGGGCTGC--AAA-GAGTGG-CTTCTTGAAAA---TAGGA-A--C-A-AAGGCT-TA-----GGTCAGTTCCTACTCT-AC-TTTGTGA-----CGTGGTAAATGTACTGATGA-AAG--CG-TTGT--GCT--CGAAAACTATAGCAAA--------AT---TTCCCTT----CTCTAT-CTGTGCGATACTGGATTTCAAC-TCTGT-TG---AG-ACTCTTTGATGCAAATAA-GC--TATGG-GTGACTT----CTTTGCATTAATGTGGCA---CCAA--GCCCAT--ACTTTGAAGCG-T-CGC-TT-G-AAG----AGTAAGTG---AC---CTT-TTCAGGGTCAGAA-CATTGC-TA----TAGACAGTTTG--------AC--TT-----TTAG-Tcgg
gi|6 : GGAGTTGCACGGTACTCCATGAGCGAAATATAAACATCAGAATTG-------CCTTCCTCGGCTTTCTTGAACATGTTTTTGATTGTTTGGACATAAAGCTCAGCTTCC-----CCATTCGATTGAGGATAAC-GCGGACTTGAGGTAGTA---TGTATAAAG-TCCCAATCCTGT---GCAAAGTCCTTGAATGT-TGCACTCGCAA-ATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACgttaaat
gi|7 : ggtgacagaccaaccccatcgataTCA-----AA-GCATTCAT----CTATCTTCTGCTGGAAGATGTCCTGG--GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCAAAT-------GGAGTGTTGAAGG-TAG-T-GAGTAGAGA-TGATTCGTGGGA-GAGTCTGACC-GTCCAATA---CCCGGAG--CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGGC-ACCCG-AGACTTGA-GGGAGAA-TATCGTCCAACGTCCTCATCG---GA--TAATGTGGTCTCAT---G-ATGGCCTT-GTT---GAGTTGCATAGGATCCatagatttgaaa
gi|8 : TTTACCTT-TTCAAAGGCCTCATC-TTG----TGCAGCATCCCAAATAAA-TTCGG-A----TT-TGGA-CG-AT-----AACAGCATTCTCATGGGA--GCTGTTGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-TCAGA--TATGTGATC-ATGC-CTAGCAC-AGTT-TCTAA-CTCA--CTACGATT--C-TT------TGGAGGTTGCATC------TCA-T-GGATGTT-------TT--T---GAC-CTTC-T-T--GGGGTCTG-GTTTAAAACC-GT--GCGAT--GAGATTATGTGACCGAAATAATCGAag
gi|9 : tacttCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGT-CCAAACAAAATTCTACA----TCTTT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGAAA----GGTTA---GGTGCA-AA---TTTTG-ATAAA--TATGTCACC-ATGC-CAAGCAG-AGTC-TCTAA-CTC-----A-GATTTGT-TT----TGTGGGGGTTTCTTC------T-A-C-A---ATC-------GC--T---GACACTTTGT-C--GGGATCTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 2222 3333333 1 11 2222222 33333 4444 444444444444444 1 1 1 1 222222 3333333 22222 1 1 1 1 22222 11 1 1 1 1 444444444 11 33 1 4444444444444 222222222 222 333333 1 22222 2222 11 2222 111111 1 1 33333333 22222222 3333333333333333333 111 1 22222 11 1 1 111 222222222222 1111 2222222222 111 1111111 22222222 111 1111 11 111 1111111 111 11 222222222 3333 1111 11 11 111 22222222222222222222222222 666666666666666666666666666666666666666666 1111 2222222222222222222222 222222222222 111 4444444 1111 222222 44444444444444444444444 111111 1 11111 111 111 222222 111 222 22 11 1111111111111111111111111111111111111111111111111111111111111111111 1 33333 1111 2222 222 333 222 22222 1 2222 1 11 111 11 33333333 11 333 1111 444444 2222 11 111 11 11 1 1 2222222 222222 1 1111
lowQualScore : 1 1 1 1 1 222 3333 1111111 5 22 1 00 8888888 44444 3 1 999 7 7 4444 22 333333333333333 1 1 3 3 4 3 3 0 777777 3 1 1 0 1 0 0 1111111 66666 5 5 5 22 5 77777 1 1 1 1 77 1 1 2 5 1 1 1 5 1 5 5 1 99999 6 333333333 99 1 44 3 5555555555555 777777777 1 3 1 333 6 888888 7 1 7 6 1 1 0 0 7 0 6 3 77777 3333 88 4444 6 88 444444 0 0 0 88 66666666 99999999 6666666666666666666 1 666 1 0 44444 22 0 0 0 1 1 3 222 8 999 1 1 000000000000 6 6 6 4444 22 1 5 77 1 0000000000 333 6 6 99 8888888 99 2 1 1 99999999 000 5 4444 6 1 44 444 6 1 3333333 777 3 11 555555555 0 1111 0 1 5555 6 11 1 11 8 8 000 44444444444444444444444444 9999999 9 000000000000000000000000000000000000000000 8 1 3 2 5 4 66 2222 0 0 5 0 1 1 0 5555555555555555555555 0 2 1 0 1 77 1 5 2 666666666666 6 111 1 888 99 7 77 6 1 2 77 6 6 7777777 1111 444444 0 1 1 99999999999999999999999 1 111111 3 888 3 99 6 1 44444 0 111 666 1 111111 999 7 6 1 333 00 11 9999999999999999999999999999999999999999999999999999999999999999999 6 2 22222 9999 6 7777 333 3 111 0 333 1 55555 0 1111 0 2 1 0 11 333 1 000 1 11 1 0 1 1 99 22222222 1 8 8 8888 99 8 0 00 11 77 444 8888 888888 1 1111 33 2 3 777 11 4 11 0 1 0 0 1 0 1 1 3333333 1 3 9 888888 1 0 8888 22 0 1 1
lowQualScore : . . . . . ... .... ....... . .. . .. ....... ..... . . ... . . .... .. ............... . . . . . . . . ...... . . . . . . . ....... ..... . . . .. . ..... . . . . .. . . . . . . . . . . . . ..... . ......... .. . .. . ............. ......... . . . ... . ...... . . . . . . . . . . . . ..... .... .. .... . .. ...... . . . .. ........ ........ ................... . ... . . ..... .. . . . . . . ... . ... . . ............ . . . .... .. . . .. . .......... ... . . .. ....... .. . . . ........ ... . .... . . .. ... . . ....... ... . .. ......... . .... . . .... . .. . .. . . ... .......................... ....... . .......................................... . . . . . . .. .... . . . . . . . ...................... . . . . . .. . . . ............ . ... . ... .. . .. . . . .. . . ....... .... ...... . . . ....................... . ...... . ... . .. . . ..... . ... ... . ...... ... . . . ... .. .. ................................................................... . . ..... .... . .... ... . ... . ... . ..... . .... . . . . .. ... . ... . .. . . . . .. ........ . . . .... .. . . .. .. .. ... .... ...... . .... .. . . ... .. . .. . . . . . . . . ....... . . . ...... . . .... .. . . .
lowQualScore : 0 0 0 0 0 000 5555 5555555 0 00 0 33 0000000 77777 7 0 333 3 3 3333 00 333333333333333 0 0 3 3 0 3 3 7 333333 7 0 0 7 0 7 7 5555555 55555 5 0 5 00 5 00000 0 0 0 0 55 0 0 5 0 0 0 0 5 0 0 0 0 77777 7 000000000 33 0 00 3 7777777777777 777777777 0 7 0 333 7 333333 3 0 3 7 0 0 7 7 3 7 7 3 00000 5555 55 0000 7 33 777777 0 0 2 22 22222222 00000000 8888888888888888888 2 888 0 0 55555 55 8 0 0 2 0 8 444 0 444 0 0 555555555555 7 7 7 2222 00 0 2 77 0 5555555555 333 7 7 22 3333333 22 2 0 0 55555555 000 7 2222 7 0 33 000 7 0 7777777 888 5 00 222222222 8 6666 6 0 4444 0 00 0 00 0 0 444 44444444444444444444444444 4444444 0 222222222222222222222222222222222222222222 0 0 8 5 7 9 77 1111 7 4 0 1 7 4 7 7777777777777777777777 7 7 0 7 0 99 0 7 5 888888888888 7 777 0 000 22 2 33 7 0 5 77 7 7 5555555 2222 000000 3 0 0 88888888888888888888888 0 888888 2 222 3 22 7 0 66666 6 666 888 0 888888 000 3 7 0 333 77 00 3333333333333333333333333333333333333333333333333333333333333333333 7 0 00000 0000 7 0000 333 7 000 7 333 0 00000 0 2222 8 5 0 8 00 444 0 444 0 00 0 6 4 4 00 00000000 4 0 0 8888 00 0 8 55 22 22 222 2222 888888 0 2222 88 5 2 555 00 2 00 0 0 2 0 0 2 0 0 2222222 0 2 2 000000 2 0 5555 88 2 2 2
consensus : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAAT---TTCGATTGAGGATANCTGCGGACTTGAGGTAGTG-G-TGNNTAAAAT-CCAA--CTG-T--GGCAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-T-CGCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAATA-T-GC-TA----AAGACG---T--------GGCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCA-NCCTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNT---AGGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTC-TCT-AACTC--GCTA-GATT--C-TT----TGTGGAGGTTGCNT------CTCA-------C-G---ATCGC--T---GACAC-TTT-TC--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG-----GCTG--TCNTT-CTT-AG-AACGGACCTCGCGAA-GA---GGTG----CCA-TGCTCCTGCTCTAGT-TTG-TACCG-A-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
Reference ( family-4234 ) : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATCCGTTCGATTGAGGATANCTGCGGACTTGAGGTAGTACG-TGNNTAAAAT-TCAAT-CTG-TT-GGCAAAGTCCNTAAATNC-TG-ACTAGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-T-CGCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAATA-T-GC-TA----AAGACG---T--------GGCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCA-NCCTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNT---AGGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-NAGTC-TCT-AACTC--GCTA-GATT--C-TT----TGTGGAGGTTGCNT------CTCA-------C-G---ATCGC--T---GACAC-TTT-TC--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG-----GCTG--NCTTT-CTTNNG-AACGGACCTCGCGAA-GA--CGGT-----CCATTGCTCCTGCTCTAGT-CTGATACCG-ANACTAGGATATC---GTCAA---CTACGGCGAGACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA-C--AGTTCTCTCAAT----TTGACTGGAGATACCTG-GGACTTGAGGTACT--G-TGGTTAAAAT-TCAA--CTGATG-GGCAAAGTTCCTAAATTCATG-ACTAGAATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|1 : ggtgaaagacctatgttTTTCGCTTCGTGACTAATTG-GTC-ATAAATG---G-----ACAA-TTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGGA-CA----T-TGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGG-CAA-ATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA-----CCAGGGACATGT----GCGAG-A--CTAA-GGGAATATC-TCTGAAGCTG-CA---A-AATCATACGCTGCAATC-TTGCAGGTGC--A--GAATGTATGGACTTCTGCATAA---T-TGACA--CTA-AGGGTT-TGT----GATCAGTTTGAACTGTAAT-ATTCCTA-----CC--ATAAATGTACTG--GTGG-A-AGTACG--GGC--ATC--CAAACACAATAGCGTA-C------AT---TT-CTTT----TTCGAT-CTGGGCATAATT-GATTTC-A-C-TAGGAGTC---AGTG-CCTTAGATGC--ATAA-----CA-CACTGGTTTGCCATCCTGCAGTAAGGTGGCT---CC-A--GACCAT--GCTTTGAAGCA-T-C-TACT-GTAAT----ACT-A-TG---TA---CTT-CTGTGGATCAAAATA-T-GA-TAGAATGAGGCT---T--------GGTGACC-----TTA--TAAGAATATATTTGACCTT-TTCAAATGCCTCA-TCTTG----TGCAGCATCCCAAAT-AAACTC-GGA----T--TTGGACG-AT-----AACAGCATTCTCATGGAA--GCTGTCGCT-TCTGACA----AACT---CGGTGCA-AA---TTTTG-CCAGA--TATGTGATC-ATGC-CTAGCA-CAGTT-TCT-AACTC--ACTATGATT--C-TT------TGAAGGTTGCAT------CTCA-------TGG---ATGGCTTT---GAC-C-TTC-TT--GGGGTCTG-GTTTTACACC-TT--GCGAT--GAGATTATGTGACCGAAATAATCAACCTCAGT-TTGA---CCTAC-TGCTATTTTTTT-TCTGAATTTAGCTTGATACCCTT---CTC---------GCTGCATCGTT-CT-----AATGCAGCACGCAAATG----GGTG----CCA-TG-TTCTACCTTAGT-CT--TACCATAGACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA-----AA-GCATTCGT----CAATTTTACGCTGAAATTCATCCTGG--GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA-------GGGGTGTTGAAGG-TAG-T-CA-ATG-AGCTTGACTCTTCTGA-AAGCTTGAGG-GTCCAGTA---ACCACTA--CGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTGC-TTCAG-CAAGTTGA-GGTAGCA-CATCATTGAGGGTTTTCATGG---GA--TAATGTGG--GCGC---GAATAGCCTT-GTT---TA-ATTCTTGGGTTCCggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|10 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaTCTGTATAA---T-CGA-AATC-A-GAGGTT-TGT----GATCAGTTTGGACTGGGA---------------------AATGT-CTACCATAA-ATAG--TG---AC--ATC--CAAACACAATGGCATA-CACTAGTAT---TT-CTTTAGAACACTAT-TTGGGCATCACT-GATTTC-A-C-TACGCGTC---AAT-TCTTTTGATGtt
gi|11 : GGTGCTGC--TAA-CAGCAA-CTTCTTCCCAA---T-AGA-CTCC-A-AGGGCT-TGT----GGTCACTGTCCACTTTCAC-TTGACGT-----CC--ATAAGTGTACTA--GTGA-A-AA--CG-CT-CTAATC--CAAATACAATCGCAAG-T------AT---CT-C
gi|12 : gtttttgcaatcttttgATGCG--CTGA--TAGATCTCTA-TACCAAATGGAAGTC--TGAGCTAGCGGAAACG-ACCAATT-------GGAGTAATGAAGG-TGG-TGAG-ATA-CGA-TGATTCt
gi|13 : ATAATG---CTAGATAGAGTGACTAGCTG------AGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTG-GGCTTattatcgagtcttatctgcatgtaaccggattttgcgt
gi|14 : ATGACCTCCTTGACCTT-TCTAAATGCATCA-ATCTG----TGCAGTGTCCC-AACAGAATTCTACA----TCTTT---TG-AA-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTG
gi|2 : GATTTCTCCAATATCGGCTTAGCAACCTGAACATA---CTT--TTCTGCCAATCCGTTAGATTGAGGATGTCTACGG----GAGG-AGTGCAATGAGCAAAAT--CATA-CTG-TTTAGCAAAGTCTGCAAATCC-TG-GGAGGAATATTG-GGG-CCATTGTC--GC--ACAACCTTAGTGGGGATACCGAATTTCGCAAATAA-------AGCTT-----TT-CA-GTTGTACTTTTGGTAT-CAC-----GAAAGCTGTACAATGGTCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGG
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttaTTTCACTTT-TGAGTA--TGATGCCATCAATAATCG-----ACA-GCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGGA-CAATCCC-TACGA--CAT---T-C---AGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGACT-CAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAGA--GATCTTGG--AAATTGTCTGT-TA-CAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTA-----CCCGGTACATA-----GCTAACATACT-A-GGTCATAAC-ACTGAACTTG-TA---ATAA-CATTCTCTGTAG-C-TAGGAGGGGCTAC--AAA-GAGTGG-CTTCTTGAAAA---TAGGG-A--C-AAGAGGCT-TAT----GGTCAGTTTCTACTCTGAC-TTTGTGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAAAACTATAGCAAA-C------AT---TT-CCTT----CTCTAT-CTGTGCGTAACTGGATTTC-A-C-TCTGTGTG---AG-GCTCTTTGATGC--AAAA-GC--TAGGGCTGACTT----TCTTGCATTAATGTGGCA---CCAA--GCCCAT--ATTTTGAAGCG-T-CGCATT-G-AAG----AGTAG-TG---AC---CTT-TTCAGGGTCAAAATA-T-GC--A----AAGGCA---T--------GAT--CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCA-ATCTG----TGCAGTGTTCCAAACAAAATTCTACA----TC-TT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGA-A----AGGT---AGGTGCA-AA---TTTGA-TAAAA--TAGTTCACC-ATGC-CAAGCA-GAGTC-TCT-AACTC-----A-GATT--TGTT----TGTGGGGGTTTCTT------CT-A-------C-A---ATCGC--T---GACAC-TTTGTC--GGGATCTG-GTCCTACACC-CTTAGAGGT--TAG--TAAATGACCAAAGTATTTGACCT--TTG-TAACT-CCAACTT-CAA---GTTTGTCTTTATTCAGTTTAATGCCTTT----TC-GAG-------TG--ACCTT--TTGAG-AACAGACCTC---AA-GATTCGAT------CA-TGCTCTT-CTCTAGT-TCG--ACCA-ACACTAGGATATC---GTCAA---CTAGGGC--AACGACGCCTTCTAG---GTCTTCA-----TA-ACATTCGT----CTATCTTTCTCTGGAATATGTCCTGA--GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCAAA--------GGTGTGTTAAAAG-TGA-T-AAGGTA-AGA-GGATGCTTCCGA-TAACTTGA-TAGTCCAATA---GCC---ACTCTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGGCTTTTTG-AAAGCTGA-GGTAGGA-CATCTTACAATGTTTTCATTG---AG--TAGTAGGGTCTCAG---T-ATTGCCTT-GTT---TAGGTCTTTAGGGTCtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|3 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaactATCAAGTCCATCAATAAT-GTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGA--GGGTAGGGGTCA----CATGA-CTTCATATTT-CAGGAGGCCAGCCATTCAGAATtagacat
gi|3 : ttgtgacctttacgtGGTAA-CTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCT-GGTATATAAATGAGCAATCA--AA-A-GGTCATAGTTGCTTGAGTTGATATGGC-AA-CATTCTTTGGAG-C-CGGGAGAAGGCGCATGAA-GGGT---TTTTTTAAAGAGTCT-GGA-A--C-A-GAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG---TGATA-AG--CGCTTGC--ATCGCCCAAAACAATTGCAAAGT------ATGCGTC-ACTT----CTCTATTCTGGGCGTATC-GCATATC-GGC-TCGGAGTTCACAGAGATTTTTGAGGC--ATAATGCAATA-GGCTCGC----CATTCTGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAAT-CA-ACTTG-GAGTACTATTAA-TGCGTAG---CT-------GGTCAAAA-A-TAGCATA----AGAACG---TGACACTAGGGCG-CTAGCGGTTAG-AAATG-CTTCCGTAACCTCGTCAAAAAGC-TCATTTCTG----GGGTTCATCCCATGTAAATTTGTGCA----TT-TC---CATAGTGTTAAGGAGTCTACGCATGGGGAACTGGTTATCGTCTAGCACAT-AATTGCGGGGTGCACAACACTTTAGCTCAAGCTTA-GAGGTCAGTTCGCGAGAAGCAGTC-TGTGAGCTCGGGCT--GTTG--C-TT----TGAGGAGGTCACTCCGGTGGCTCATTGGTCTC-GA--ATAGC--TCAGGCCACTTTT-TC--GGTGTGGGTGTTCGATTCCACTTAGAGGTCGTGGA--ATGTGACCAAAATACTTGACCT--GTGCTAACTGCTTACTTGCCA---GTTT---TGTAT---GCCTAATGCTTTTGAACTCTGAGACGCTGTTG--TCTTTGCTTTAGCGAAGGACCTTGCGAA-GA--GGGCGCTGATCATTGCTCCTGCTCGGGTGTTGATACCG-A-ACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTCTT-CTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCAAATGGCGTTCGGGGTATTGAAAGTTGGTT-AA-ATA-TGA-T-ATTCCATCGATAAG---GA-T-GTCCAATAGAGACCC--A--CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGC-ACCTGTTAAGTTGCTGGAAGGAGCATCTTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGA-ATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|4 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac---TT-CCTT----TTCAAT-CTGTGCGTATCATGTTTCC-G-CATCAG--TA---AGTGCCCTC-GACGC--ATAA-GC--AA---TTGGCTTGTCATTTGGTAGAACTACAGCT---CCTA--GTCCGG--ATTTTGATGCA-TCCACACT-T-A--------CAA-TG---ACAGGTTTGTTCA-CATCGAAGAA-A-G--TA----AGAAC----T--------GGTG-CT-----TCAGATAAAAGTCT-CTTGATTTC-CTTGAATGCACTT-TCCTGACCCTG----GTCCC-TGTGGAATGTTACATCCTTC-CT---CA-AG-----AG-A--GTTCTAATGGGT--TGTGTGATT-ATCGACATCTTTGGT---AGGT-----A---TTTGG-CAAAG--TAGTTGATA-GTGC-CTAG---TAGCCGTTC-GACTC---CT----TT--C-TTGTCCTCTGGTGGCAGCAT------CTTAG------T-A---ATCGC--T---T-CAA-TTT-TCCTGGGGTCGG-GTTTCACACC-TTCACACGA--TAAA--ATGTGTCCAATGTATGTGACTT--t
gi|5 : ag-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA-----CC-GGTACATA-----GCTAA-A--TT-ATGGTCATAAC-A-TGAACTTG-TA---A-AA--ATTCTCTGTAG-CCTAGGAGGGGCTGC--AAA-GAGTGG-CTTCTTGAAAA---TAGGA-A--C-A-AAGGCT-TA-----GGTCAGTTCCTACTCT-AC-TTTGTGA-----CGTGGTAAATGTACTG--ATGA-A-AG--CG-TTGT--GCT--CGAAAACTATAGCAAA--------AT---TTCCCTT----CTCTAT-CTGTGCGATACTGGATTTCAA-C-TCTGT-TG---AG-ACTCTTTGATGCAAATAA-GC--TATGGGTGACTT----CTTTGCATTAATGTGGCA---CCAA--GCCCAT--ACTTTGAAGCG-T-CGC-TT-G-AAG----AGTAAGTG---AC---CTT-TTCAGGGTCAGAACATT-GC-TA----TAGACAGTTT--------GAC--TT-----TTAG-Tcgg
gi|6 : GGAGTTGCACGGTACTCCATGAGCGAAATATAAACATCAGAATTG-------CCTTCCTCGGCTTTCTTGAACATGTTTTTGATTGTTTGGACATAAAGCTCAGCTTCCCCA-----TTCGATTGAGGATAAC-GCGGACTTGAGGTAGTA---TGTATAAAGTCCCAATCCTG-T---GCAAAGTCCTTGAATGT-TGCACTCGCAAATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACgttaaat
gi|7 : ggtgacagaccaaccccatcgataTCA-----AA-GCATTCAT----CTATCTTCTGCTGGAAGATGTCCTGG--GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCAAAT-------GGAGTGTTGAAGG-TAG-T-GA-GTAGAGA-TGATTCGTGGGA-GAGTCTGACC-GTCCAATA---CCCGGAG--CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGGC-ACCCG-AGACTTGA-GGGAGAA-TATCGTCCAACGTCCTCATCG---GA--TAATGTGGTCTCAT---G-ATGGCCTT-GTT---GAGTTGCATAGGATCCatagatttgaaa
gi|8 : TTTACCTT-TTCAAAGGCCTCA-TCTTG----TGCAGCATCCCAAATAAA-TTCGG-A----TT-TGGA-CG-AT-----AACAGCATTCTCATGGGA--GCTGTTGCT-TCTGACA----AACT---CGGTGCA-AA---TTTTG-TCAGA--TATGTGATC-ATGC-CTAGCA-CAGTT-TCT-AACTC--ACTACGATT--C-TT------TGGAGGTTGCAT------CTCA-------T-GGATGTTTT--T---GAC-C-TTC-TT--GGGGTCTG-GTTTAAAACC-GT--GCGAT--GAGATTATGTGACCGAAATAATCGAag
gi|9 : tacttCTCCTTGACCTT-TCTAAATGCACCA-ATCTG----TGCAGTGT-CCAAACAAAATTCTACA----TCTTT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGAAA----GGTT---AGGTGCA-AA---TTTTG-ATAAA--TATGTCACC-ATGC-CAAGCA-GAGTC-TCT-AACTC-----A-GATTTGT-TT----TGTGGGGGTTTCTT------CT-A-------C-A---ATCGC--T---GACAC-TTTGTC--GGGATCTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA
Alignments
lowQualScore : 222 2222 3333333 1 11 2222222 22222 1 4444 1 11 3333333 1 1 1 1 222222 3333333 22222 1 1 1 1 22222 11 1 1 1 1 444444444 11 33 1 4444444444444 222222222 222 333333 1 22222 2222 11 2222 111111 1 1 33333333 22222222 3333333333333333333 111 1 22222 11 1 1 111 222222222222 1111 2222222222 111 1111111 22222222 111 1111 11 111 1111111 111 11 222222222 3333 1111 11 11 33333333333333333333333333333333 66666666666666666666666666666666666666666 1111 2222222222222222222222 222222222222 111 1 4444444 1111 222222 555555555555555555555555 111111 111111 11111 111 111 222222 111 222 22 11 8888888888888888888888888888888888 555555555555 1 1 333333 22222 2222 222 111 222 22222 1 2222 1 11 111 11 33333333 11 333 1111 444444 2222 11 111 11 11 1 1 2222222 222222 1 1111
lowQualScore : 1 1 1 1 1 222 3333 1111111 5 22 1 00 8888888 99999 5 1 999 7 7 2222 22 3 88 8888888 1 1 3 3 1 3 3 0 777777 3 1 1 0 1 0 0 1111111 66666 5 5 5 22 5 77777 1 1 1 1 77 1 1 2 5 1 1 1 5 1 5 5 1 99999 6 333333333 99 1 44 3 5555555555555 777777777 1 3 1 333 6 888888 7 1 7 6 1 1 0 0 7 0 6 3 77777 3333 88 4444 6 88 444444 0 0 0 88 66666666 99999999 6666666666666666666 1 666 1 0 44444 22 0 0 0 1 1 3 222 8 999 1 1 000000000000 6 6 6 4444 22 1 5 77 1 0000000000 333 6 6 99 8888888 99 2 1 1 99999999 000 5 4444 6 1 44 444 6 1 3333333 777 3 11 555555555 0 1111 0 1 5555 6 11 1 11 8 00000000000000000000000000000000 88 1 3 8 22222222222222222222222222222222222222222 8 1 3 1 5 4 555 2222 0 0 5 0 1 1 0 5555555555555555555555 0 2 1 0 1 77 1 5 2 666666666666 6 111 1 888 99 7 77 6 1 3 3 6 7777777 1111 444444 0 1 1 333333333333333333333333 1 111111 3 7 555555 6 1 44444 0 111 666 1 111111 999 7 6 1 333 00 11 0000000000000000000000000000000000 3 888 111111111111 3 6 2 222222 88888 6 7777 333 3 999 0 333 1 55555 0 1111 0 2 1 0 11 333 1 000 1 11 1 0 1 1 99 22222222 1 8 8 8888 99 8 0 00 11 77 444 8888 888888 1 1111 33 2 3 777 11 4 11 0 1 0 0 1 0 1 1 3333333 1 3 9 888888 1 0 8888 22 0 1 1
lowQualScore : . . . . . ... .... ....... . .. . .. ....... ..... . . ... . . .... .. . .. ....... . . . . . . . . ...... . . . . . . . ....... ..... . . . .. . ..... . . . . .. . . . . . . . . . . . . ..... . ......... .. . .. . ............. ......... . . . ... . ...... . . . . . . . . . . . . ..... .... .. .... . .. ...... . . . .. ........ ........ ................... . ... . . ..... .. . . . . . . ... . ... . . ............ . . . .... .. . . .. . .......... ... . . .. ....... .. . . . ........ ... . .... . . .. ... . . ....... ... . .. ......... . .... . . .... . .. . .. . ................................ .. . . . ......................................... . . . . . . ... .... . . . . . . . ...................... . . . . . .. . . . ............ . ... . ... .. . .. . . . . . ....... .... ...... . . . ........................ . ...... . . ...... . . ..... . ... ... . ...... ... . . . ... .. .. .................................. . ... ............ . . . ...... ..... . .... ... . ... . ... . ..... . .... . . . . .. ... . ... . .. . . . . .. ........ . . . .... .. . . .. .. .. ... .... ...... . .... .. . . ... .. . .. . . . . . . . . ....... . . . ...... . . .... .. . . .
lowQualScore : 0 0 0 0 0 000 5555 5555555 0 00 0 33 0000000 77777 0 0 333 3 3 3333 00 3 33 0000000 0 0 3 3 0 3 3 7 333333 7 0 0 7 0 7 7 5555555 55555 5 0 5 00 5 00000 0 0 0 0 55 0 0 5 0 0 0 0 5 0 0 0 0 77777 7 000000000 33 0 00 3 7777777777777 777777777 0 7 0 333 7 333333 3 0 3 7 0 0 7 7 3 7 7 3 00000 5555 55 0000 7 33 777777 0 0 2 22 22222222 00000000 8888888888888888888 2 888 0 0 55555 55 8 0 0 2 0 8 444 0 444 0 0 555555555555 7 7 7 2222 00 0 2 77 0 5555555555 333 7 7 22 3333333 22 2 0 0 55555555 000 7 2222 7 0 33 000 7 0 7777777 888 5 00 222222222 8 6666 6 0 4444 0 00 0 00 0 22222222222222222222222222222222 88 0 2 0 00000000000000000000000000000000000000000 0 0 8 0 7 9 999 1111 7 4 0 1 7 4 7 7777777777777777777777 7 7 0 7 0 99 0 7 5 888888888888 7 777 0 000 22 2 33 7 0 3 7 7 5555555 2222 000000 3 0 0 333333333333333333333333 0 888888 2 3 555555 7 0 66666 6 666 888 0 888888 000 3 7 0 333 77 00 0000000000000000000000000000000000 7 777 333333333333 3 7 0 777777 33333 7 0000 333 7 000 7 333 0 00000 0 2222 8 5 0 8 00 444 0 444 0 00 0 6 4 4 00 00000000 4 0 0 8888 00 0 8 55 22 22 222 2222 888888 0 2222 88 5 2 555 00 2 00 0 0 2 0 0 2 0 0 2222222 0 2 2 000000 2 0 5555 88 2 2 2
consensus : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAAT---TT-GATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG-----GCTG--TCNTT--TT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
Reference ( family-4234 ) : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAAT---TTCGATTGAGGATANCTGCGGACTTGAGGTAGTG--GTGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG-----GCTG--TCNTT--CTTAG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA-C--AGTTCTCTCAAT---TT-GACTGGAGATACCTG-GGACTTGAGGTACTG---TGGTTAAAAT-TCAA--CTGAT--GGGCAAAGTTCCTAAATTCATG-ACTAGAATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|1 : ggtgaaagacctatgttTTTCGCTTCGTGACTAATTG-GTC-ATAAATG---G-----ACAA-TTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGGA-CA----T-TGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGG-CAA-ATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA-----CCAGGGACATGT----GCGAG-A--CTAA-GGGAATATC-TCTGAAGCTG-CA---A-AATCATACGCTGCAATC-TTGCAGGTGC--A--GAATGTATGGACTTCTGCATAA---T-TGACA--CTA-AGGGTT-TGT----GATCAGTTTGAACTGTAAT-ATTCCTA-----CC--ATAAATGTACTG--GTGG-A-AGTACG--GGC--ATC--CAAACACAATAGCGTA-C------AT---TT-CTTT----TTCGAT-CTGGGCATAATT-GATTTC-A-C-TAGGAGTC---AGTG-CCTTAGATGC--ATAA-----CA-CACTGGTTTGCCATCCTGCAGTAAGGTGGCT---CC-A--GACCAT--GCTTTGAAGCA-TC--TACT-GTAAT----ACT-A-TG---TA---CTT-CTGTGGATCAAAA-TA-TGA-TAGAATGAGGCT---TG--------GTGACC-----TTA--TAAGAATATATTTGACCTT-TTCAAATGCCTCATC-TTG----TGCAGCATCCCAAAT-AAACTC-GGA----T--TTGGACG-AT-----AACAGCATTCTCATGGAA--GCTGTCGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-CCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTATGATT--C-TT------TGAAGGTTGCATC------TCA-------TGG---A-TGGCTTT---GAC-CTTC-T-T--GGGGTCTG-GTTTTACACC-TT--GCGAT--GAGATTATGTGACCGAAATAATCAACCTCAGT-TTGA---CCTAC-TGCTATTTTTTT-TCTGAATTTAGCTTGATACCCTT---CTC---------GCTGCATCGTT--CT----AATGCAGCACGCAAATG---GGTGC----CA-TG-TTCTACCTTAGT-CT--TACCATAG-ACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA-----AA-GCATTCGT----CAATTTTACGCTGAAATTCATCCTGG--GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA-------GGGGTGTTGAAGG-TAG-T-CA-ATG-AGCTTGACTCTTCTGA-AAGCTTGAGG-GTCCAGTA---ACCACTA--CGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTGC-TTCAG-CAAGTTGA-GGTAGCA-CATCATTGAGGGTTTTCATGG---GA--TAATGTGG--GCGC---GAATAGCCTT-GTT---TA-ATTCTTGGGTTCCggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|10 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaTCTGTATAA---T-CGA-AATC-A-GAGGTT-TGT----GATCAGTTTGGACTGGGA---------------------AATGT-CTACCATAA-ATAG--TG---AC--ATC--CAAACACAATGGCATA-CACTAGTAT---TT-CTTTAGAACACTAT-TTGGGCATCACT-GATTTC-A-C-TACGCGTC---AAT-TCTTTTGATGtt
gi|11 : GGTGCTGC--TAA-CAGCAA-CTTCTTCCCAA---T-AGA-CTCC-A-AGGGCT-TGT----GGTCACTGTCCACTTTCAC-TTGACGT-----CC--ATAAGTGTACTA--GTGA-A-AA--CG-CT-CTAATC--CAAATACAATCGCAAG-T------AT---CT-C
gi|12 : gtttttgcaatcttttgATGCG--CTGA--TAGATCTCTA-TACCAAATGGAAGTC--TGAGCTAGCGGAAACG-ACCAATT-------GGAGTAATGAAGG-TGG-TGAG-ATA-CGA-TGATTCt
gi|13 : ATAATG---CTAGATAGAGTGACTAGCTG------AGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTG-GGCTTattatcgagtcttatctgcatgtaaccggattttgcgt
gi|14 : ATGACCTCCTTGACCTT-TCTAAATGCATCAAT-CTG----TGCAGTGTCCC-AACAGAATTCTACA----TCTTT---TG-AA-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTG
gi|2 : GATTTCTCCAATATCGGCTTAGCAACCTGAACATA---CTT--TTCTGCCAATCCGTTAGATTGAGGATGTCTACGG----GAGG-AGTGCAATGAGCAAAAT-CATA--CTG-TTTAG-CAAAGTCTGCAAATCC-TG-GGAGGAATATTG-GGG-CCATTGTC--GC--ACAACCTTAGTGGGGATACCGAATTTCGCAAATAA-------AGCTT-----TT-CA-GTTGTACTTTTGGTAT-CAC-----GAAAGCTGTACAATGGTCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGG
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttaTTTCACTTT-TGAGTA--TGATGCCATCAATAATCG-----ACA-GCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGGA-CAATCCC-TACGA--CAT---T-C---AGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGACT-CAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAGA--GATCTTGG--AAATTGTCTGT-TA-CAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTA-----CCCGGTACATA-----GCTAACATACT-A-GGTCATAAC-ACTGAACTTG-TA---ATAA-CATTCTCTGTAG-C-TAGGAGGGGCTAC--AAA-GAGTGG-CTTCTTGAAAA---TAGGG-A--C-AAGAGGCT-TAT----GGTCAGTTTCTACTCTGAC-TTTGTGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAAAACTATAGCAAA-C------AT---TT-CCTT----CTCTAT-CTGTGCGTAACTGGATTTC-A-C-TCTGTGTG---AG-GCTCTTTGATGC--AAAA-GC--TAGGGCTGACTT----TCTTGCATTAATGTGGCA---CCAA--GCCCAT--ATTTTGAAGCG-TC-GCATT-G-AAG----AGTAG-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC--A----AAGGCA---TG--------AT--CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGTTCCAAACAAAATTCTACA----TC-TT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGA-A----AGGTA---GGTGCA-AA---TTTGA-TAAAA--TAGTTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATT--TGTT----TGTGGGGGTTTCTTC------T-A-------C-A---A-TCGC--T---GACACTTTGT-C--GGGATCTG-GTCCTACACC-CTTAGAGGT--TAG--TAAATGACCAAAGTATTTGACCT--TTG-TAACT-CCAACTT-CAA---GTTTGTCTTTATTCAGTTTAATGCCTTT----TC-GAG-------TG--ACCTT--TTGAG-AACAGACCTC---AAGATTCGAT------CA-TGCTCTT-CTCTAGT-TCG--ACC--AACACTAGGATATC---GTCAA---CTAGGGC--AACGACGCCTTCTAG---GTCTTCA-----TA-ACATTCGT----CTATCTTTCTCTGGAATATGTCCTGA--GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCAAA--------GGTGTGTTAAAAG-TGA-T-AAGGTA-AGA-GGATGCTTCCGA-TAACTTGA-TAGTCCAATA---GCC---ACTCTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGGCTTTTTG-AAAGCTGA-GGTAGGA-CATCTTACAATGTTTTCATTG---AG--TAGTAGGGTCTCAG---T-ATTGCCTT-GTT---TAGGTCTTTAGGGTCtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|3 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaactATCAAGTCCATCAATAAT-GTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGA--GGGTAGGGGTCA----CATGA-CTTCATATTT-CAGGAGGCCAGCCATTCAGAATtagacat
gi|3 : ttgtgacctttacgtGGTAA-CTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCT-GGTATATAAATGAGCAATCA--AA-A-GGTCATAGTTGCTTGAGTTGATATGGC-AA-CATTCTTTGGAG-C-CGGGAGAAGGCGCATGAA-GGGT---TTTTTTAAAGAGTCT-GGA-A--C-A-GAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG---TGATA-AG--CGCTTGC--ATCGCCCAAAACAATTGCAAAGT------ATGCGTC-ACTT----CTCTATTCTGGGCGTATC-GCATATC-GGC-TCGGAGTTCACAGAGATTTTTGAGGC--ATAATGCAATA-GGCTCGC----CATTCTGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAATC-A-ACTTG-GAGTACTATTAA-TGCGTAG---CT-------GGTCAAAAATA--GCATA----AGAACG---TGACACTAGGGCG-CTAGCGGTTAG-AAATG-CTTCCGTAACCTCGTCAAAAAGC-TCATTTCTG----GGGTTCATCCCATGTAAATTTGTGCA----TT-TC---CATAGTGTTAAGGAGTCTACGCATGGGGAACTGGTTATCGTCTAGCACAT-AATTGCGGGGTGCACAACACTTTAGCTCAAGCTTA-GAGGTCAGTTCGCGAGAAGCAGTCTGTGAGCTCGGGCT--GTTG--C-TT----TGAGGAGGTCACTCCGGTGGCTCATTGGTCTC-G---AATAGC--TCAGGCCACTTT-TTC--GGTGTGGGTGTTCGATTCCACTTAGAGGTCGTGGA--ATGTGACCAAAATACTTGACCT--GTGCTAACTGCTTACTTGCCA---GTTT---TGTAT---GCCTAATGCTTTTGAACTCTGAGACGCTGTTG--TCTTTGCTTTAGCGAAGGACCTTGCGAAGAG--GGCGCTGATCATTGCTCCTGCTCGGGTGTTGATACC--GA-ACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTCTT-CTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCAAATGGCGTTCGGGGTATTGAAAGTTGGTT-AA-ATA-TGA-T-ATTCCATCGATAAG---GA-T-GTCCAATAGAGACCC--A--CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGC-ACCTGTTAAGTTGCTGGAAGGAGCATCTTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGA-ATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|4 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac---TT-CCTT----TTCAAT-CTGTGCGTATCATGTTTCC-G-CATCAG--TA---AGTGCCCTC-GACGC--ATAA-GC--AA---TTGGCTTGTCATTTGGTAGAACTACAGCT---CCTA--GTCCGG--ATTTTGATGCA-TCCACACT-T-A--------CAA-TG---ACAGGTTTGTTCACA-TCGAAG-AA-AG--TA----AGAAC----TG--------GTG-CT-----TCAGATAAAAGTCTC-TTGATTTC-CTTGAATGCACTTTC-CTGACCCTG----GTCCC-TGTGGAATGTTACATCCTTC-CT---CA-AG-----AG-A--GTTCTAATGGGT--TGTGTGATT-ATCGACATCTTTGGTA---GGT-----A---TTTGG-CAAAG--TAGTTGATA-GTGC-CTAGTAGCCGT-TC-GA-CTC---CT----TT--C-TTGTCCTCTGGTGGCAGCATC------TTAG------T-A---A-TCGC--T---T-CAATTT-T-CCTGGGGTCGG-GTTTCACACC-TTCACACGA--TAAA--ATGTGTCCAATGTATGTGACTT--t
gi|5 : ag-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA-----CC-GGTACATA-----GCTAA-A--TT-ATGGTCATAAC-A-TGAACTTG-TA---A-AA--ATTCTCTGTAG-CCTAGGAGGGGCTGC--AAA-GAGTGG-CTTCTTGAAAA---TAGGA-A--C-A-AAGGCT-TA-----GGTCAGTTCCTACTCT-AC-TTTGTGA-----CGTGGTAAATGTACTG--ATGA-A-AG--CG-TTGT--GCT--CGAAAACTATAGCAAA--------AT---TTCCCTT----CTCTAT-CTGTGCGATACTGGATTTCAA-C-TCTGT-TG---AG-ACTCTTTGATGCAAATAA-GC--TATGGGTGACTT----CTTTGCATTAATGTGGCA---CCAA--GCCCAT--ACTTTGAAGCG-TC-GC-TT-G-AAG----AGTAAGTG---AC---CTT-TTCAGGGTCAGAA-CATTGC-TA----TAGACAGTTTG--------AC--TT-----TTAG-Tcgg
gi|6 : GGAGTTGCACGGTACTCCATGAGCGAAATATAAACATCAGAATTG-------CCTTCCTCGGCTTTCTTGAACATGTTTTTGATTGTTTGGACATAAAGCTCAGCTTCCCCA-----TTCGATTGAGGATAAC-GCGGACTTGAGGTAGT---ATGTATAAAGTCCCAATCCTG-T---G-CAAAGTCCTTGAATGT-TGCACTCGCAAATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACgttaaat
gi|7 : ggtgacagaccaaccccatcgataTCA-----AA-GCATTCAT----CTATCTTCTGCTGGAAGATGTCCTGG--GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCAAAT-------GGAGTGTTGAAGG-TAG-T-GA-GTAGAGA-TGATTCGTGGGA-GAGTCTGACC-GTCCAATA---CCCGGAG--CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGGC-ACCCG-AGACTTGA-GGGAGAA-TATCGTCCAACGTCCTCATCG---GA--TAATGTGGTCTCAT---G-ATGGCCTT-GTT---GAGTTGCATAGGATCCatagatttgaaa
gi|8 : TTTACCTT-TTCAAAGGCCTCATC-TTG----TGCAGCATCCCAAATAAA-TTCGG-A----TT-TGGA-CG-AT-----AACAGCATTCTCATGGGA--GCTGTTGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-TCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTACGATT--C-TT------TGGAGGTTGCATC------TCA-------T-GGATG-TTTT--T---GAC-CTTC-T-T--GGGGTCTG-GTTTAAAACC-GT--GCGAT--GAGATTATGTGACCGAAATAATCGAag
gi|9 : tacttCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGT-CCAAACAAAATTCTACA----TCTTT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGAAA----GGTTA---GGTGCA-AA---TTTTG-ATAAA--TATGTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATTTGT-TT----TGTGGGGGTTTCTTC------T-A-------C-A---A-TCGC--T---GACACTTTGT-C--GGGATCTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA
Alignments
lowQualScore : 222 2222 3333333 1 11 2222222 222222 3333 1 11 3333333 1 1 1 1 222222 3333333 22222 1 1 1 1 22222 11 1 1 1 1 444444444 11 33 1 4444444444444 222222222 222 333333 1 22222 2222 11 2222 111111 1 1 33333333 22222222 3333333333333333333 111 1 22222 11 1 1 111 222222222222 1111 2222222222 111 1111111 22222222 111 1111 11 111 1111111 111 11 222222222 3333 1111 11 11 33333333333333333333333333333333 66666666666666666666666666666666666666666 1111 2222222222222222222222 222222222222 111 1 4444444 1111 222222 555555555555555555555555 111111 111111 11111 111 111 222222 111 222 22 11 88888888888888888888888888888888888 555555555555 1 1 333333 22222 2222 222 111 222 22222 1 2222 1 11 111 11 33333333 11 333 1111 444444 2222 11 111 11 11 1 1 2222222 222222 1 1111
lowQualScore : 1 1 1 1 1 222 3333 1111111 5 22 1 00 8888888 6 333333 1 999 7 7 2222 22 3 88 8888888 1 1 3 3 1 3 3 0 777777 3 1 1 0 1 0 0 1111111 66666 5 5 5 22 5 77777 1 1 1 1 77 1 1 2 5 1 1 1 5 1 5 5 1 99999 6 333333333 99 1 44 3 5555555555555 777777777 1 3 1 333 6 888888 7 1 7 6 1 1 0 0 7 0 6 3 77777 3333 88 4444 6 88 444444 0 0 0 88 66666666 99999999 6666666666666666666 1 666 1 0 44444 22 0 0 0 1 1 3 222 8 999 1 1 000000000000 6 6 6 4444 22 1 5 77 1 0000000000 333 6 6 99 8888888 99 2 1 1 99999999 000 5 4444 6 1 44 444 6 1 3333333 777 3 11 555555555 0 1111 0 1 5555 6 11 1 11 8 00000000000000000000000000000000 88 1 3 8 22222222222222222222222222222222222222222 8 1 3 1 5 4 555 2222 0 0 5 0 1 1 0 5555555555555555555555 0 2 1 0 1 77 1 5 2 666666666666 6 111 1 888 99 7 77 6 1 3 3 6 7777777 1111 444444 0 1 1 333333333333333333333333 1 111111 3 7 555555 6 1 44444 0 111 666 1 111111 999 7 6 1 333 00 11 66666666666666666666666666666666666 3 888 111111111111 3 6 2 222222 88888 6 7777 333 3 999 0 333 1 55555 0 1111 0 2 1 0 11 333 1 000 1 11 1 0 1 1 99 22222222 1 8 8 8888 99 8 0 00 11 77 444 8888 888888 1 1111 33 2 3 777 11 4 11 0 1 0 0 1 0 1 1 3333333 1 3 9 888888 1 0 8888 22 0 1 1
lowQualScore : . . . . . ... .... ....... . .. . .. ....... . ...... . ... . . .... .. . .. ....... . . . . . . . . ...... . . . . . . . ....... ..... . . . .. . ..... . . . . .. . . . . . . . . . . . . ..... . ......... .. . .. . ............. ......... . . . ... . ...... . . . . . . . . . . . . ..... .... .. .... . .. ...... . . . .. ........ ........ ................... . ... . . ..... .. . . . . . . ... . ... . . ............ . . . .... .. . . .. . .......... ... . . .. ....... .. . . . ........ ... . .... . . .. ... . . ....... ... . .. ......... . .... . . .... . .. . .. . ................................ .. . . . ......................................... . . . . . . ... .... . . . . . . . ...................... . . . . . .. . . . ............ . ... . ... .. . .. . . . . . ....... .... ...... . . . ........................ . ...... . . ...... . . ..... . ... ... . ...... ... . . . ... .. .. ................................... . ... ............ . . . ...... ..... . .... ... . ... . ... . ..... . .... . . . . .. ... . ... . .. . . . . .. ........ . . . .... .. . . .. .. .. ... .... ...... . .... .. . . ... .. . .. . . . . . . . . ....... . . . ...... . . .... .. . . .
lowQualScore : 0 0 0 0 0 000 5555 5555555 0 00 0 33 0000000 7 777777 0 333 3 3 3333 00 3 33 0000000 0 0 3 3 0 3 3 7 333333 7 0 0 7 0 7 7 5555555 55555 5 0 5 00 5 00000 0 0 0 0 55 0 0 5 0 0 0 0 5 0 0 0 0 77777 7 000000000 33 0 00 3 7777777777777 777777777 0 7 0 333 7 333333 3 0 3 7 0 0 7 7 3 7 7 3 00000 5555 55 0000 7 33 777777 0 0 2 22 22222222 00000000 8888888888888888888 2 888 0 0 55555 55 8 0 0 2 0 8 444 0 444 0 0 555555555555 7 7 7 2222 00 0 2 77 0 5555555555 333 7 7 22 3333333 22 2 0 0 55555555 000 7 2222 7 0 33 000 7 0 7777777 888 5 00 222222222 8 6666 6 0 4444 0 00 0 00 0 22222222222222222222222222222222 88 0 2 0 00000000000000000000000000000000000000000 0 0 8 0 7 9 999 1111 7 4 0 1 7 4 7 7777777777777777777777 7 7 0 7 0 99 0 7 5 888888888888 7 777 0 000 22 2 33 7 0 3 7 7 5555555 2222 000000 3 0 0 333333333333333333333333 0 888888 2 3 555555 7 0 66666 6 666 888 0 888888 000 3 7 0 333 77 00 77777777777777777777777777777777777 7 777 333333333333 3 7 0 777777 33333 7 0000 333 7 000 7 333 0 00000 0 2222 8 5 0 8 00 444 0 444 0 00 0 6 4 4 00 00000000 4 0 0 8888 00 0 8 55 22 22 222 2222 888888 0 2222 88 5 2 555 00 2 00 0 0 2 0 0 2 0 0 2222222 0 2 2 000000 2 0 5555 88 2 2 2
consensus : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAAT---TC-GATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
Reference ( family-4234 ) : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAAT---TT-GATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCNT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA-C--AGTTCTCTCAAT---TT-GACTGGAGATACCTG-GGACTTGAGGTACTG---TGGTTAAAAT-TCAA--CTGAT--GGGCAAAGTTCCTAAATTCATG-ACTAGAATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|1 : ggtgaaagacctatgttTTTCGCTTCGTGACTAATTG-GTC-ATAAATG---G-----ACAA-TTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGGA-CA----T-TGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGG-CAA-ATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA-----CCAGGGACATGT----GCGAG-A--CTAA-GGGAATATC-TCTGAAGCTG-CA---A-AATCATACGCTGCAATC-TTGCAGGTGC--A--GAATGTATGGACTTCTGCATAA---T-TGACA--CTA-AGGGTT-TGT----GATCAGTTTGAACTGTAAT-ATTCCTA-----CC--ATAAATGTACTG--GTGG-A-AGTACG--GGC--ATC--CAAACACAATAGCGTA-C------AT---TT-CTTT----TTCGAT-CTGGGCATAATT-GATTTC-A-C-TAGGAGTC---AGTG-CCTTAGATGC--ATAA-----CA-CACTGGTTTGCCATCCTGCAGTAAGGTGGCT---CC-A--GACCAT--GCTTTGAAGCA-TC--TACT-GTAAT----ACT-A-TG---TA---CTT-CTGTGGATCAAAA-TA-TGA-TAGAATGAGGCT---TG--------GTGACC-----TTA--TAAGAATATATTTGACCTT-TTCAAATGCCTCATC-TTG----TGCAGCATCCCAAAT-AAACTC-GGA----T--TTGGACG-AT-----AACAGCATTCTCATGGAA--GCTGTCGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-CCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTATGATT--C-TT------TGAAGGTTGCATC------TCA-------TGG---A-TGGCTTT---GAC-CTTC-T-T--GGGGTCTG-GTTTTACACC-TT--GCGAT--GAGATTATGTGACCGAAATAATCAACCTCAGT-TTGA---CCTAC-TGCTATTTTTTT-TCTGAATTTAGCTTGATACCCTT---CTC------GCTGCATCGT------TCT----AATGCAGCACGCAAATG---GGTGC----CA-TG-TTCTACCTTAGT-CT--TACCATAG-ACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA-----AA-GCATTCGT----CAATTTTACGCTGAAATTCATCCTGG--GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA-------GGGGTGTTGAAGG-TAG-T-CA-ATG-AGCTTGACTCTTCTGA-AAGCTTGAGG-GTCCAGTA---ACCACTA--CGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTGC-TTCAG-CAAGTTGA-GGTAGCA-CATCATTGAGGGTTTTCATGG---GA--TAATGTGG--GCGC---GAATAGCCTT-GTT---TA-ATTCTTGGGTTCCggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|10 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaTCTGTATAA---T-CGA-AATC-A-GAGGTT-TGT----GATCAGTTTGGACTGGGA---------------------AATGT-CTACCATAA-ATAG--TG---AC--ATC--CAAACACAATGGCATA-CACTAGTAT---TT-CTTTAGAACACTAT-TTGGGCATCACT-GATTTC-A-C-TACGCGTC---AAT-TCTTTTGATGtt
gi|11 : GGTGCTGC--TAA-CAGCAA-CTTCTTCCCAA---T-AGA-CTCC-A-AGGGCT-TGT----GGTCACTGTCCACTTTCAC-TTGACGT-----CC--ATAAGTGTACTA--GTGA-A-AA--CG-CT-CTAATC--CAAATACAATCGCAAG-T------AT---CT-C
gi|12 : gtttttgcaatcttttgATGCG--CTGA--TAGATCTCTA-TACCAAATGGAAGTC--TGAGCTAGCGGAAACG-ACCAATT-------GGAGTAATGAAGG-TGG-TGAG-ATA-CGA-TGATTCt
gi|13 : ATAATG---CTAGATAGAGTGACTAGCTG------AGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTG-GGCTTattatcgagtcttatctgcatgtaaccggattttgcgt
gi|14 : ATGACCTCCTTGACCTT-TCTAAATGCATCAAT-CTG----TGCAGTGTCCC-AACAGAATTCTACA----TCTTT---TG-AA-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTG
gi|2 : GATTTCTCCAATATCGGCTTAGCAACCTGAACATA---CTT--TTCTGCCAATCCGTTAGATTGAGGATGTCTACGG----GAGG-AGTGCAATGAGCAAAAT-CATA--CTG-TTTAG-CAAAGTCTGCAAATCC-TG-GGAGGAATATTG-GGG-CCATTGTC--GC--ACAACCTTAGTGGGGATACCGAATTTCGCAAATAA-------AGCTT-----TT-CA-GTTGTACTTTTGGTAT-CAC-----GAAAGCTGTACAATGGTCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGG
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttaTTTCACTTT-TGAGTA--TGATGCCATCAATAATCG-----ACA-GCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGGA-CAATCCC-TACGA--CAT---T-C---AGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGACT-CAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAGA--GATCTTGG--AAATTGTCTGT-TA-CAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTA-----CCCGGTACATA-----GCTAACATACT-A-GGTCATAAC-ACTGAACTTG-TA---ATAA-CATTCTCTGTAG-C-TAGGAGGGGCTAC--AAA-GAGTGG-CTTCTTGAAAA---TAGGG-A--C-AAGAGGCT-TAT----GGTCAGTTTCTACTCTGAC-TTTGTGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAAAACTATAGCAAA-C------AT---TT-CCTT----CTCTAT-CTGTGCGTAACTGGATTTC-A-C-TCTGTGTG---AG-GCTCTTTGATGC--AAAA-GC--TAGGGCTGACTT----TCTTGCATTAATGTGGCA---CCAA--GCCCAT--ATTTTGAAGCG-TC-GCATT-G-AAG----AGTAG-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC--A----AAGGCA---TG--------AT--CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGTTCCAAACAAAATTCTACA----TC-TT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGA-A----AGGTA---GGTGCA-AA---TTTGA-TAAAA--TAGTTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATT--TGTT----TGTGGGGGTTTCTTC------T-A-------C-A---A-TCGC--T---GACACTTTGT-C--GGGATCTG-GTCCTACACC-CTTAGAGGT--TAG--TAAATGACCAAAGTATTTGACCT--TTG-TAACT-CCAACTT-CAA---GTTTGTCTTTATTCAGTTTAATGCCTTT----TC-GAG----TG--ACCT------TTTGAG-AACAGACCTC---AAGATTCGAT------CA-TGCTCTT-CTCTAGT-TCG--ACC--AACACTAGGATATC---GTCAA---CTAGGGC--AACGACGCCTTCTAG---GTCTTCA-----TA-ACATTCGT----CTATCTTTCTCTGGAATATGTCCTGA--GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCAAA--------GGTGTGTTAAAAG-TGA-T-AAGGTA-AGA-GGATGCTTCCGA-TAACTTGA-TAGTCCAATA---GCC---ACTCTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGGCTTTTTG-AAAGCTGA-GGTAGGA-CATCTTACAATGTTTTCATTG---AG--TAGTAGGGTCTCAG---T-ATTGCCTT-GTT---TAGGTCTTTAGGGTCtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|3 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaactATCAAGTCCATCAATAAT-GTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGA--GGGTAGGGGTCA----CATGA-CTTCATATTT-CAGGAGGCCAGCCATTCAGAATtagacat
gi|3 : ttgtgacctttacgtGGTAA-CTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCT-GGTATATAAATGAGCAATCA--AA-A-GGTCATAGTTGCTTGAGTTGATATGGC-AA-CATTCTTTGGAG-C-CGGGAGAAGGCGCATGAA-GGGT---TTTTTTAAAGAGTCT-GGA-A--C-A-GAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG---TGATA-AG--CGCTTGC--ATCGCCCAAAACAATTGCAAAGT------ATGCGTC-ACTT----CTCTATTCTGGGCGTATC-GCATATC-GGC-TCGGAGTTCACAGAGATTTTTGAGGC--ATAATGCAATA-GGCTCGC----CATTCTGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAATC-A-ACTTG-GAGTACTATTAA-TGCGTAG---CT-------GGTCAAAAATA--GCATA----AGAACG---TGACACTAGGGCG-CTAGCGGTTAG-AAATG-CTTCCGTAACCTCGTCAAAAAGC-TCATTTCTG----GGGTTCATCCCATGTAAATTTGTGCA----TT-TC---CATAGTGTTAAGGAGTCTACGCATGGGGAACTGGTTATCGTCTAGCACAT-AATTGCGGGGTGCACAACACTTTAGCTCAAGCTTA-GAGGTCAGTTCGCGAGAAGCAGTCTGTGAGCTCGGGCT--GTTG--C-TT----TGAGGAGGTCACTCCGGTGGCTCATTGGTCTC-G---AATAGC--TCAGGCCACTTT-TTC--GGTGTGGGTGTTCGATTCCACTTAGAGGTCGTGGA--ATGTGACCAAAATACTTGACCT--GTGCTAACTGCTTACTTGCCA---GTTT---TGTAT---GCCTAATGCTTTTGAACTCTGAGACGCTG--TTGTCTTTGCTTT-AGCGAAGGACCTTGCGAAGAG--GGCGCTGATCATTGCTCCTGCTCGGGTGTTGATACC--GA-ACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTCTT-CTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCAAATGGCGTTCGGGGTATTGAAAGTTGGTT-AA-ATA-TGA-T-ATTCCATCGATAAG---GA-T-GTCCAATAGAGACCC--A--CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGC-ACCTGTTAAGTTGCTGGAAGGAGCATCTTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGA-ATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|4 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac---TT-CCTT----TTCAAT-CTGTGCGTATCATGTTTCC-G-CATCAG--TA---AGTGCCCTC-GACGC--ATAA-GC--AA---TTGGCTTGTCATTTGGTAGAACTACAGCT---CCTA--GTCCGG--ATTTTGATGCA-TCCACACT-T-A--------CAA-TG---ACAGGTTTGTTCACA-TCGAAG-AA-AG--TA----AGAAC----TG--------GTG-CT-----TCAGATAAAAGTCTC-TTGATTTC-CTTGAATGCACTTTC-CTGACCCTG----GTCCC-TGTGGAATGTTACATCCTTC-CT---CA-AG-----AG-A--GTTCTAATGGGT--TGTGTGATT-ATCGACATCTTTGGTA---GGT-----A---TTTGG-CAAAG--TAGTTGATA-GTGC-CTAGTAGCCGT-TC-GA-CTC---CT----TT--C-TTGTCCTCTGGTGGCAGCATC------TTAG------T-A---A-TCGC--T---T-CAATTT-T-CCTGGGGTCGG-GTTTCACACC-TTCACACGA--TAAA--ATGTGTCCAATGTATGTGACTT--t
gi|5 : ag-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA-----CC-GGTACATA-----GCTAA-A--TT-ATGGTCATAAC-A-TGAACTTG-TA---A-AA--ATTCTCTGTAG-CCTAGGAGGGGCTGC--AAA-GAGTGG-CTTCTTGAAAA---TAGGA-A--C-A-AAGGCT-TA-----GGTCAGTTCCTACTCT-AC-TTTGTGA-----CGTGGTAAATGTACTG--ATGA-A-AG--CG-TTGT--GCT--CGAAAACTATAGCAAA--------AT---TTCCCTT----CTCTAT-CTGTGCGATACTGGATTTCAA-C-TCTGT-TG---AG-ACTCTTTGATGCAAATAA-GC--TATGGGTGACTT----CTTTGCATTAATGTGGCA---CCAA--GCCCAT--ACTTTGAAGCG-TC-GC-TT-G-AAG----AGTAAGTG---AC---CTT-TTCAGGGTCAGAA-CATTGC-TA----TAGACAGTTTG--------AC--TT-----TTAG-Tcgg
gi|6 : GGAGTTGCACGGTACTCCATGAGCGAAATATAAACATCAGAATTG-------CCTTCCTCGGCTTTCTTGAACATGTTTTTGATTGTTTGGACATAAAGCTCAGCT-TCCCCAT---TC-GATTGAGGATAAC-GCGGACTTGAGGTAGT---ATGTATAAAGTCCCAATCCTG-T---G-CAAAGTCCTTGAATGT-TGCACTCGCAAATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACgttaaat
gi|7 : ggtgacagaccaaccccatcgataTCA-----AA-GCATTCAT----CTATCTTCTGCTGGAAGATGTCCTGG--GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCAAAT-------GGAGTGTTGAAGG-TAG-T-GA-GTAGAGA-TGATTCGTGGGA-GAGTCTGACC-GTCCAATA---CCCGGAG--CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGGC-ACCCG-AGACTTGA-GGGAGAA-TATCGTCCAACGTCCTCATCG---GA--TAATGTGGTCTCAT---G-ATGGCCTT-GTT---GAGTTGCATAGGATCCatagatttgaaa
gi|8 : TTTACCTT-TTCAAAGGCCTCATC-TTG----TGCAGCATCCCAAATAAA-TTCGG-A----TT-TGGA-CG-AT-----AACAGCATTCTCATGGGA--GCTGTTGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-TCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTACGATT--C-TT------TGGAGGTTGCATC------TCA-------T-GGATG-TTTT--T---GAC-CTTC-T-T--GGGGTCTG-GTTTAAAACC-GT--GCGAT--GAGATTATGTGACCGAAATAATCGAag
gi|9 : tacttCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGT-CCAAACAAAATTCTACA----TCTTT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGAAA----GGTTA---GGTGCA-AA---TTTTG-ATAAA--TATGTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATTTGT-TT----TGTGGGGGTTTCTTC------T-A-------C-A---A-TCGC--T---GACACTTTGT-C--GGGATCTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA
Alignments
lowQualScore : 222 2222 3333333 1 11 2222222 2222 3333 1 11 3333333 1 1 1 1 222222 3333333 22222 1 1 1 1 22222 11 1 1 1 1 444444444 11 33 1 4444444444444 222222222 222 333333 1 22222 2222 11 2222 111111 1 1 33333333 22222222 3333333333333333333 111 1 22222 11 1 1 111 222222222222 1111 2222222222 111 1111111 22222222 111 1111 11 111 1111111 111 11 222222222 3333 1111 11 11 33333333333333333333333333333333 66666666666666666666666666666666666666666 1111 2222222222222222222222 222222222222 111 1 4444444 1111 222222 555555555555555555555555 111111 111111 11111 111 111 222222 111 222 22 11 88888888888888888888888888888888888 555555555555 1 1 333333 22222 2222 222 111 222 22222 1 2222 1 11 111 11 33333333 11 333 1111 444444 2222 11 111 11 11 1 1 2222222 222222 1 1111
lowQualScore : 1 1 1 1 1 222 3333 1111111 5 22 1 00 8888888 6 8888 1 999 7 7 2222 22 3 88 8888888 1 1 3 3 1 3 3 0 777777 3 1 1 0 1 0 0 1111111 66666 5 5 5 22 5 77777 1 1 1 1 77 1 1 2 5 1 1 1 5 1 5 5 1 99999 6 333333333 99 1 44 3 5555555555555 777777777 1 3 1 333 6 888888 7 1 7 6 1 1 0 0 7 0 6 3 77777 3333 88 4444 6 88 444444 0 0 0 88 66666666 99999999 6666666666666666666 1 666 1 0 44444 22 0 0 0 1 1 3 222 8 999 1 1 000000000000 6 6 6 4444 22 1 5 77 1 0000000000 333 6 6 99 8888888 99 2 1 1 99999999 000 5 4444 6 1 44 444 6 1 3333333 777 3 11 555555555 0 1111 0 1 5555 6 11 1 11 8 00000000000000000000000000000000 88 1 3 8 22222222222222222222222222222222222222222 8 1 3 1 5 4 555 2222 0 0 5 0 1 1 0 5555555555555555555555 0 2 1 0 1 77 1 5 2 666666666666 6 111 1 888 99 7 77 6 1 3 3 6 7777777 1111 444444 0 1 1 333333333333333333333333 1 111111 3 7 555555 6 1 44444 0 111 666 1 111111 999 7 6 1 333 00 11 44444444444444444444444444444444444 3 888 111111111111 3 6 2 222222 88888 6 7777 333 3 999 0 333 1 55555 0 1111 0 2 1 0 11 333 1 000 1 11 1 0 1 1 99 22222222 1 8 8 8888 99 8 0 00 11 77 444 8888 888888 1 1111 33 2 3 777 11 4 11 0 1 0 0 1 0 1 1 3333333 1 3 9 888888 1 0 8888 22 0 1 1
lowQualScore : . . . . . ... .... ....... . .. . .. ....... . .... . ... . . .... .. . .. ....... . . . . . . . . ...... . . . . . . . ....... ..... . . . .. . ..... . . . . .. . . . . . . . . . . . . ..... . ......... .. . .. . ............. ......... . . . ... . ...... . . . . . . . . . . . . ..... .... .. .... . .. ...... . . . .. ........ ........ ................... . ... . . ..... .. . . . . . . ... . ... . . ............ . . . .... .. . . .. . .......... ... . . .. ....... .. . . . ........ ... . .... . . .. ... . . ....... ... . .. ......... . .... . . .... . .. . .. . ................................ .. . . . ......................................... . . . . . . ... .... . . . . . . . ...................... . . . . . .. . . . ............ . ... . ... .. . .. . . . . . ....... .... ...... . . . ........................ . ...... . . ...... . . ..... . ... ... . ...... ... . . . ... .. .. ................................... . ... ............ . . . ...... ..... . .... ... . ... . ... . ..... . .... . . . . .. ... . ... . .. . . . . .. ........ . . . .... .. . . .. .. .. ... .... ...... . .... .. . . ... .. . .. . . . . . . . . ....... . . . ...... . . .... .. . . .
lowQualScore : 0 0 0 0 0 000 5555 5555555 0 00 0 33 0000000 7 3333 0 333 3 3 3333 00 3 33 0000000 0 0 3 3 0 3 3 7 333333 7 0 0 7 0 7 7 5555555 55555 5 0 5 00 5 00000 0 0 0 0 55 0 0 5 0 0 0 0 5 0 0 0 0 77777 7 000000000 33 0 00 3 7777777777777 777777777 0 7 0 333 7 333333 3 0 3 7 0 0 7 7 3 7 7 3 00000 5555 55 0000 7 33 777777 0 0 2 22 22222222 00000000 8888888888888888888 2 888 0 0 55555 55 8 0 0 2 0 8 444 0 444 0 0 555555555555 7 7 7 2222 00 0 2 77 0 5555555555 333 7 7 22 3333333 22 2 0 0 55555555 000 7 2222 7 0 33 000 7 0 7777777 888 5 00 222222222 8 6666 6 0 4444 0 00 0 00 0 22222222222222222222222222222222 88 0 2 0 00000000000000000000000000000000000000000 0 0 8 0 7 9 999 1111 7 4 0 1 7 4 7 7777777777777777777777 7 7 0 7 0 99 0 7 5 888888888888 7 777 0 000 22 2 33 7 0 3 7 7 5555555 2222 000000 3 0 0 333333333333333333333333 0 888888 2 3 555555 7 0 66666 6 666 888 0 888888 000 3 7 0 333 77 00 00000000000000000000000000000000000 7 777 333333333333 3 7 0 777777 33333 7 0000 333 7 000 7 333 0 00000 0 2222 8 5 0 8 00 444 0 444 0 00 0 6 4 4 00 00000000 4 0 0 8888 00 0 8 55 22 22 222 2222 888888 0 2222 88 5 2 555 00 2 00 0 0 2 0 0 2 0 0 2222222 0 2 2 000000 2 0 5555 88 2 2 2
consensus : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATTCG----ATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
Reference ( family-4234 ) : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATTCG----ATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA-C--AGTTCTCTCAATTTG----ACTGGAGATACCTG-GGACTTGAGGTACTG---TGGTTAAAAT-TCAA--CTGAT--GGGCAAAGTTCCTAAATTCATG-ACTAGAATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|1 : ggtgaaagacctatgttTTTCGCTTCGTGACTAATTG-GTC-ATAAATG---G-----ACAA-TTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGGA-CA----T-TGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGG-CAA-ATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA-----CCAGGGACATGT----GCGAG-A--CTAA-GGGAATATC-TCTGAAGCTG-CA---A-AATCATACGCTGCAATC-TTGCAGGTGC--A--GAATGTATGGACTTCTGCATAA---T-TGACA--CTA-AGGGTT-TGT----GATCAGTTTGAACTGTAAT-ATTCCTA-----CC--ATAAATGTACTG--GTGG-A-AGTACG--GGC--ATC--CAAACACAATAGCGTA-C------AT---TT-CTTT----TTCGAT-CTGGGCATAATT-GATTTC-A-C-TAGGAGTC---AGTG-CCTTAGATGC--ATAA-----CA-CACTGGTTTGCCATCCTGCAGTAAGGTGGCT---CC-A--GACCAT--GCTTTGAAGCA-TC--TACT-GTAAT----ACT-A-TG---TA---CTT-CTGTGGATCAAAA-TA-TGA-TAGAATGAGGCT---TG--------GTGACC-----TTA--TAAGAATATATTTGACCTT-TTCAAATGCCTCATC-TTG----TGCAGCATCCCAAAT-AAACTC-GGA----T--TTGGACG-AT-----AACAGCATTCTCATGGAA--GCTGTCGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-CCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTATGATT--C-TT------TGAAGGTTGCATC------TCA-------TGG---A-TGGCTTT---GAC-CTTC-T-T--GGGGTCTG-GTTTTACACC-TT--GCGAT--GAGATTATGTGACCGAAATAATCAACCTCAGT-TTGA---CCTAC-TGCTATTTTTTT-TCTGAATTTAGCTTGATACCCTT---CTC------GCTGCATCGT------TCT----AATGCAGCACGCAAATG---GGTGC----CA-TG-TTCTACCTTAGT-CT--TACCATAG-ACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA-----AA-GCATTCGT----CAATTTTACGCTGAAATTCATCCTGG--GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA-------GGGGTGTTGAAGG-TAG-T-CA-ATG-AGCTTGACTCTTCTGA-AAGCTTGAGG-GTCCAGTA---ACCACTA--CGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTGC-TTCAG-CAAGTTGA-GGTAGCA-CATCATTGAGGGTTTTCATGG---GA--TAATGTGG--GCGC---GAATAGCCTT-GTT---TA-ATTCTTGGGTTCCggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|10 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaTCTGTATAA---T-CGA-AATC-A-GAGGTT-TGT----GATCAGTTTGGACTGGGA---------------------AATGT-CTACCATAA-ATAG--TG---AC--ATC--CAAACACAATGGCATA-CACTAGTAT---TT-CTTTAGAACACTAT-TTGGGCATCACT-GATTTC-A-C-TACGCGTC---AAT-TCTTTTGATGtt
gi|11 : GGTGCTGC--TAA-CAGCAA-CTTCTTCCCAA---T-AGA-CTCC-A-AGGGCT-TGT----GGTCACTGTCCACTTTCAC-TTGACGT-----CC--ATAAGTGTACTA--GTGA-A-AA--CG-CT-CTAATC--CAAATACAATCGCAAG-T------AT---CT-C
gi|12 : gtttttgcaatcttttgATGCG--CTGA--TAGATCTCTA-TACCAAATGGAAGTC--TGAGCTAGCGGAAACG-ACCAATT-------GGAGTAATGAAGG-TGG-TGAG-ATA-CGA-TGATTCt
gi|13 : ATAATG---CTAGATAGAGTGACTAGCTG------AGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTG-GGCTTattatcgagtcttatctgcatgtaaccggattttgcgt
gi|14 : ATGACCTCCTTGACCTT-TCTAAATGCATCAAT-CTG----TGCAGTGTCCC-AACAGAATTCTACA----TCTTT---TG-AA-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTG
gi|2 : GATTTCTCCAATATCGGCTTAGCAACCTGAACATA---CTT--TTCTGCCAATCCGTTAGATTGAGGATGTCTACGG----GAGG-AGTGCAATGAGCAAAAT-CATA--CTG-TTTAG-CAAAGTCTGCAAATCC-TG-GGAGGAATATTG-GGG-CCATTGTC--GC--ACAACCTTAGTGGGGATACCGAATTTCGCAAATAA-------AGCTT-----TT-CA-GTTGTACTTTTGGTAT-CAC-----GAAAGCTGTACAATGGTCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGG
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttaTTTCACTTT-TGAGTA--TGATGCCATCAATAATCG-----ACA-GCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGGA-CAATCCC-TACGA--CAT---T-C---AGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGACT-CAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAGA--GATCTTGG--AAATTGTCTGT-TA-CAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTA-----CCCGGTACATA-----GCTAACATACT-A-GGTCATAAC-ACTGAACTTG-TA---ATAA-CATTCTCTGTAG-C-TAGGAGGGGCTAC--AAA-GAGTGG-CTTCTTGAAAA---TAGGG-A--C-AAGAGGCT-TAT----GGTCAGTTTCTACTCTGAC-TTTGTGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAAAACTATAGCAAA-C------AT---TT-CCTT----CTCTAT-CTGTGCGTAACTGGATTTC-A-C-TCTGTGTG---AG-GCTCTTTGATGC--AAAA-GC--TAGGGCTGACTT----TCTTGCATTAATGTGGCA---CCAA--GCCCAT--ATTTTGAAGCG-TC-GCATT-G-AAG----AGTAG-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC--A----AAGGCA---TG--------AT--CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGTTCCAAACAAAATTCTACA----TC-TT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGA-A----AGGTA---GGTGCA-AA---TTTGA-TAAAA--TAGTTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATT--TGTT----TGTGGGGGTTTCTTC------T-A-------C-A---A-TCGC--T---GACACTTTGT-C--GGGATCTG-GTCCTACACC-CTTAGAGGT--TAG--TAAATGACCAAAGTATTTGACCT--TTG-TAACT-CCAACTT-CAA---GTTTGTCTTTATTCAGTTTAATGCCTTT----TC-GAG----TG--ACCT------TTTGAG-AACAGACCTC---AAGATTCGAT------CA-TGCTCTT-CTCTAGT-TCG--ACC--AACACTAGGATATC---GTCAA---CTAGGGC--AACGACGCCTTCTAG---GTCTTCA-----TA-ACATTCGT----CTATCTTTCTCTGGAATATGTCCTGA--GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCAAA--------GGTGTGTTAAAAG-TGA-T-AAGGTA-AGA-GGATGCTTCCGA-TAACTTGA-TAGTCCAATA---GCC---ACTCTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGGCTTTTTG-AAAGCTGA-GGTAGGA-CATCTTACAATGTTTTCATTG---AG--TAGTAGGGTCTCAG---T-ATTGCCTT-GTT---TAGGTCTTTAGGGTCtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|3 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaactATCAAGTCCATCAATAAT-GTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGA--GGGTAGGGGTCA----CATGA-CTTCATATTT-CAGGAGGCCAGCCATTCAGAATtagacat
gi|3 : ttgtgacctttacgtGGTAA-CTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCT-GGTATATAAATGAGCAATCA--AA-A-GGTCATAGTTGCTTGAGTTGATATGGC-AA-CATTCTTTGGAG-C-CGGGAGAAGGCGCATGAA-GGGT---TTTTTTAAAGAGTCT-GGA-A--C-A-GAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG---TGATA-AG--CGCTTGC--ATCGCCCAAAACAATTGCAAAGT------ATGCGTC-ACTT----CTCTATTCTGGGCGTATC-GCATATC-GGC-TCGGAGTTCACAGAGATTTTTGAGGC--ATAATGCAATA-GGCTCGC----CATTCTGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAATC-A-ACTTG-GAGTACTATTAA-TGCGTAG---CT-------GGTCAAAAATA--GCATA----AGAACG---TGACACTAGGGCG-CTAGCGGTTAG-AAATG-CTTCCGTAACCTCGTCAAAAAGC-TCATTTCTG----GGGTTCATCCCATGTAAATTTGTGCA----TT-TC---CATAGTGTTAAGGAGTCTACGCATGGGGAACTGGTTATCGTCTAGCACAT-AATTGCGGGGTGCACAACACTTTAGCTCAAGCTTA-GAGGTCAGTTCGCGAGAAGCAGTCTGTGAGCTCGGGCT--GTTG--C-TT----TGAGGAGGTCACTCCGGTGGCTCATTGGTCTC-G---AATAGC--TCAGGCCACTTT-TTC--GGTGTGGGTGTTCGATTCCACTTAGAGGTCGTGGA--ATGTGACCAAAATACTTGACCT--GTGCTAACTGCTTACTTGCCA---GTTT---TGTAT---GCCTAATGCTTTTGAACTCTGAGACGCTG--TTGTCTTTGCTTT-AGCGAAGGACCTTGCGAAGAG--GGCGCTGATCATTGCTCCTGCTCGGGTGTTGATACC--GA-ACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTCTT-CTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCAAATGGCGTTCGGGGTATTGAAAGTTGGTT-AA-ATA-TGA-T-ATTCCATCGATAAG---GA-T-GTCCAATAGAGACCC--A--CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGC-ACCTGTTAAGTTGCTGGAAGGAGCATCTTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGA-ATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|4 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac---TT-CCTT----TTCAAT-CTGTGCGTATCATGTTTCC-G-CATCAG--TA---AGTGCCCTC-GACGC--ATAA-GC--AA---TTGGCTTGTCATTTGGTAGAACTACAGCT---CCTA--GTCCGG--ATTTTGATGCA-TCCACACT-T-A--------CAA-TG---ACAGGTTTGTTCACA-TCGAAG-AA-AG--TA----AGAAC----TG--------GTG-CT-----TCAGATAAAAGTCTC-TTGATTTC-CTTGAATGCACTTTC-CTGACCCTG----GTCCC-TGTGGAATGTTACATCCTTC-CT---CA-AG-----AG-A--GTTCTAATGGGT--TGTGTGATT-ATCGACATCTTTGGTA---GGT-----A---TTTGG-CAAAG--TAGTTGATA-GTGC-CTAGTAGCCGT-TC-GA-CTC---CT----TT--C-TTGTCCTCTGGTGGCAGCATC------TTAG------T-A---A-TCGC--T---T-CAATTT-T-CCTGGGGTCGG-GTTTCACACC-TTCACACGA--TAAA--ATGTGTCCAATGTATGTGACTT--t
gi|5 : ag-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA-----CC-GGTACATA-----GCTAA-A--TT-ATGGTCATAAC-A-TGAACTTG-TA---A-AA--ATTCTCTGTAG-CCTAGGAGGGGCTGC--AAA-GAGTGG-CTTCTTGAAAA---TAGGA-A--C-A-AAGGCT-TA-----GGTCAGTTCCTACTCT-AC-TTTGTGA-----CGTGGTAAATGTACTG--ATGA-A-AG--CG-TTGT--GCT--CGAAAACTATAGCAAA--------AT---TTCCCTT----CTCTAT-CTGTGCGATACTGGATTTCAA-C-TCTGT-TG---AG-ACTCTTTGATGCAAATAA-GC--TATGGGTGACTT----CTTTGCATTAATGTGGCA---CCAA--GCCCAT--ACTTTGAAGCG-TC-GC-TT-G-AAG----AGTAAGTG---AC---CTT-TTCAGGGTCAGAA-CATTGC-TA----TAGACAGTTTG--------AC--TT-----TTAG-Tcgg
gi|6 : GGAGTTGCACGGTACTCCATGAGCGAAATATAAACATCAGAATTG-------CCTTCCTCGGCTTTCTTGAACATGTTTTTGATTGTTTGGACATAAAGCTCAGCT-TCCCCATTCG----ATTGAGGATAAC-GCGGACTTGAGGTAGT---ATGTATAAAGTCCCAATCCTG-T---G-CAAAGTCCTTGAATGT-TGCACTCGCAAATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACgttaaat
gi|7 : ggtgacagaccaaccccatcgataTCA-----AA-GCATTCAT----CTATCTTCTGCTGGAAGATGTCCTGG--GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCAAAT-------GGAGTGTTGAAGG-TAG-T-GA-GTAGAGA-TGATTCGTGGGA-GAGTCTGACC-GTCCAATA---CCCGGAG--CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGGC-ACCCG-AGACTTGA-GGGAGAA-TATCGTCCAACGTCCTCATCG---GA--TAATGTGGTCTCAT---G-ATGGCCTT-GTT---GAGTTGCATAGGATCCatagatttgaaa
gi|8 : TTTACCTT-TTCAAAGGCCTCATC-TTG----TGCAGCATCCCAAATAAA-TTCGG-A----TT-TGGA-CG-AT-----AACAGCATTCTCATGGGA--GCTGTTGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-TCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTACGATT--C-TT------TGGAGGTTGCATC------TCA-------T-GGATG-TTTT--T---GAC-CTTC-T-T--GGGGTCTG-GTTTAAAACC-GT--GCGAT--GAGATTATGTGACCGAAATAATCGAag
gi|9 : tacttCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGT-CCAAACAAAATTCTACA----TCTTT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGAAA----GGTTA---GGTGCA-AA---TTTTG-ATAAA--TATGTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATTTGT-TT----TGTGGGGGTTTCTTC------T-A-------C-A---A-TCGC--T---GACACTTTGT-C--GGGATCTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA
Alignments
lowQualScore : 222 2222 3333333 1 11 2222222 2222 3333 1 11 3333333 1 1 1 1 222222 3333333 22222 1 1 1 1 22222 11 1 1 1 1 444444444 11 33 1 4444444444444 222222222 222 333333 1 22222 2222 11 2222 111111 1 1 33333333 22222222 3333333333333333333 111 1 22222 11 1 1 111 222222222222 1111 2222222222 111 1111111 22222222 111 1111 11 111 1111111 111 11 222222222 3333 1111 11 11 33333333333333333333333333333333 66666666666666666666666666666666666666666 1111 2222222222222222222222 222222222222 111 1 4444444 1111 222222 555555555555555555555555 111111 111111 11111 111 111 222222 111 222 22 11 88888888888888888888888888888888888 555555555555 1 1 333333 22222 2222 222 111 222 22222 1 2222 1 11 111 11 33333333 11 333 1111 444444 2222 11 111 11 11 1 1 2222222 222222 1 1111
lowQualScore : 1 1 1 1 1 222 3333 1111111 5 22 1 00 8888888 6 8888 1 999 7 7 2222 22 3 88 8888888 1 1 3 3 1 3 3 0 777777 3 1 1 0 1 0 0 1111111 66666 5 5 5 22 5 77777 1 1 1 1 77 1 1 2 5 1 1 1 5 1 5 5 1 99999 6 333333333 99 1 44 3 5555555555555 777777777 1 3 1 333 6 888888 7 1 7 6 1 1 0 0 7 0 6 3 77777 3333 88 4444 6 88 444444 0 0 0 88 66666666 99999999 6666666666666666666 1 666 1 0 44444 22 0 0 0 1 1 3 222 8 999 1 1 000000000000 6 6 6 4444 22 1 5 77 1 0000000000 333 6 6 99 8888888 99 2 1 1 99999999 000 5 4444 6 1 44 444 6 1 3333333 777 3 11 555555555 0 1111 0 1 5555 6 11 1 11 8 00000000000000000000000000000000 88 1 3 8 22222222222222222222222222222222222222222 8 1 3 1 5 4 555 2222 0 0 5 0 1 1 0 5555555555555555555555 0 2 1 0 1 77 1 5 2 666666666666 6 111 1 888 99 7 77 6 1 3 3 6 7777777 1111 444444 0 1 1 333333333333333333333333 1 111111 3 7 555555 6 1 44444 0 111 666 1 111111 999 7 6 1 333 00 11 44444444444444444444444444444444444 3 888 111111111111 3 6 2 222222 88888 6 7777 333 3 999 0 333 1 55555 0 1111 0 2 1 0 11 333 1 000 1 11 1 0 1 1 99 22222222 1 8 8 8888 99 8 0 00 11 77 444 8888 888888 1 1111 33 2 3 777 11 4 11 0 1 0 0 1 0 1 1 3333333 1 3 9 888888 1 0 8888 22 0 1 1
lowQualScore : . . . . . ... .... ....... . .. . .. ....... . .... . ... . . .... .. . .. ....... . . . . . . . . ...... . . . . . . . ....... ..... . . . .. . ..... . . . . .. . . . . . . . . . . . . ..... . ......... .. . .. . ............. ......... . . . ... . ...... . . . . . . . . . . . . ..... .... .. .... . .. ...... . . . .. ........ ........ ................... . ... . . ..... .. . . . . . . ... . ... . . ............ . . . .... .. . . .. . .......... ... . . .. ....... .. . . . ........ ... . .... . . .. ... . . ....... ... . .. ......... . .... . . .... . .. . .. . ................................ .. . . . ......................................... . . . . . . ... .... . . . . . . . ...................... . . . . . .. . . . ............ . ... . ... .. . .. . . . . . ....... .... ...... . . . ........................ . ...... . . ...... . . ..... . ... ... . ...... ... . . . ... .. .. ................................... . ... ............ . . . ...... ..... . .... ... . ... . ... . ..... . .... . . . . .. ... . ... . .. . . . . .. ........ . . . .... .. . . .. .. .. ... .... ...... . .... .. . . ... .. . .. . . . . . . . . ....... . . . ...... . . .... .. . . .
lowQualScore : 0 0 0 0 0 000 5555 5555555 0 00 0 33 0000000 7 3333 0 333 3 3 3333 00 3 33 0000000 0 0 3 3 0 3 3 7 333333 7 0 0 7 0 7 7 5555555 55555 5 0 5 00 5 00000 0 0 0 0 55 0 0 5 0 0 0 0 5 0 0 0 0 77777 7 000000000 33 0 00 3 7777777777777 777777777 0 7 0 333 7 333333 3 0 3 7 0 0 7 7 3 7 7 3 00000 5555 55 0000 7 33 777777 0 0 2 22 22222222 00000000 8888888888888888888 2 888 0 0 55555 55 8 0 0 2 0 8 444 0 444 0 0 555555555555 7 7 7 2222 00 0 2 77 0 5555555555 333 7 7 22 3333333 22 2 0 0 55555555 000 7 2222 7 0 33 000 7 0 7777777 888 5 00 222222222 8 6666 6 0 4444 0 00 0 00 0 22222222222222222222222222222222 88 0 2 0 00000000000000000000000000000000000000000 0 0 8 0 7 9 999 1111 7 4 0 1 7 4 7 7777777777777777777777 7 7 0 7 0 99 0 7 5 888888888888 7 777 0 000 22 2 33 7 0 3 7 7 5555555 2222 000000 3 0 0 333333333333333333333333 0 888888 2 3 555555 7 0 66666 6 666 888 0 888888 000 3 7 0 333 77 00 00000000000000000000000000000000000 7 777 333333333333 3 7 0 777777 33333 7 0000 333 7 000 7 333 0 00000 0 2222 8 5 0 8 00 444 0 444 0 00 0 6 4 4 00 00000000 4 0 0 8888 00 0 8 55 22 22 222 2222 888888 0 2222 88 5 2 555 00 2 00 0 0 2 0 0 2 0 0 2222222 0 2 2 000000 2 0 5555 88 2 2 2
consensus : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATTCG----ATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
Reference ( family-4234 ) : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATTCG----ATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA-C--AGTTCTCTCAATTTG----ACTGGAGATACCTG-GGACTTGAGGTACTG---TGGTTAAAAT-TCAA--CTGAT--GGGCAAAGTTCCTAAATTCATG-ACTAGAATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|1 : ggtgaaagacctatgttTTTCGCTTCGTGACTAATTG-GTC-ATAAATG---G-----ACAA-TTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGGA-CA----T-TGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGG-CAA-ATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA-----CCAGGGACATGT----GCGAG-A--CTAA-GGGAATATC-TCTGAAGCTG-CA---A-AATCATACGCTGCAATC-TTGCAGGTGC--A--GAATGTATGGACTTCTGCATAA---T-TGACA--CTA-AGGGTT-TGT----GATCAGTTTGAACTGTAAT-ATTCCTA-----CC--ATAAATGTACTG--GTGG-A-AGTACG--GGC--ATC--CAAACACAATAGCGTA-C------AT---TT-CTTT----TTCGAT-CTGGGCATAATT-GATTTC-A-C-TAGGAGTC---AGTG-CCTTAGATGC--ATAA-----CA-CACTGGTTTGCCATCCTGCAGTAAGGTGGCT---CC-A--GACCAT--GCTTTGAAGCA-TC--TACT-GTAAT----ACT-A-TG---TA---CTT-CTGTGGATCAAAA-TA-TGA-TAGAATGAGGCT---TG--------GTGACC-----TTA--TAAGAATATATTTGACCTT-TTCAAATGCCTCATC-TTG----TGCAGCATCCCAAAT-AAACTC-GGA----T--TTGGACG-AT-----AACAGCATTCTCATGGAA--GCTGTCGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-CCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTATGATT--C-TT------TGAAGGTTGCATC------TCA-------TGG---A-TGGCTTT---GAC-CTTC-T-T--GGGGTCTG-GTTTTACACC-TT--GCGAT--GAGATTATGTGACCGAAATAATCAACCTCAGT-TTGA---CCTAC-TGCTATTTTTTT-TCTGAATTTAGCTTGATACCCTT---CTC------GCTGCATCGT------TCT----AATGCAGCACGCAAATG---GGTGC----CA-TG-TTCTACCTTAGT-CT--TACCATAG-ACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA-----AA-GCATTCGT----CAATTTTACGCTGAAATTCATCCTGG--GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA-------GGGGTGTTGAAGG-TAG-T-CA-ATG-AGCTTGACTCTTCTGA-AAGCTTGAGG-GTCCAGTA---ACCACTA--CGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTGC-TTCAG-CAAGTTGA-GGTAGCA-CATCATTGAGGGTTTTCATGG---GA--TAATGTGG--GCGC---GAATAGCCTT-GTT---TA-ATTCTTGGGTTCCggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|10 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaTCTGTATAA---T-CGA-AATC-A-GAGGTT-TGT----GATCAGTTTGGACTGGGA---------------------AATGT-CTACCATAA-ATAG--TG---AC--ATC--CAAACACAATGGCATA-CACTAGTAT---TT-CTTTAGAACACTAT-TTGGGCATCACT-GATTTC-A-C-TACGCGTC---AAT-TCTTTTGATGtt
gi|11 : GGTGCTGC--TAA-CAGCAA-CTTCTTCCCAA---T-AGA-CTCC-A-AGGGCT-TGT----GGTCACTGTCCACTTTCAC-TTGACGT-----CC--ATAAGTGTACTA--GTGA-A-AA--CG-CT-CTAATC--CAAATACAATCGCAAG-T------AT---CT-C
gi|12 : gtttttgcaatcttttgATGCG--CTGA--TAGATCTCTA-TACCAAATGGAAGTC--TGAGCTAGCGGAAACG-ACCAATT-------GGAGTAATGAAGG-TGG-TGAG-ATA-CGA-TGATTCt
gi|13 : ATAATG---CTAGATAGAGTGACTAGCTG------AGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTG-GGCTTattatcgagtcttatctgcatgtaaccggattttgcgt
gi|14 : ATGACCTCCTTGACCTT-TCTAAATGCATCAAT-CTG----TGCAGTGTCCC-AACAGAATTCTACA----TCTTT---TG-AA-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTG
gi|2 : GATTTCTCCAATATCGGCTTAGCAACCTGAACATA---CTT--TTCTGCCAATCCGTTAGATTGAGGATGTCTACGG----GAGG-AGTGCAATGAGCAAAAT-CATA--CTG-TTTAG-CAAAGTCTGCAAATCC-TG-GGAGGAATATTG-GGG-CCATTGTC--GC--ACAACCTTAGTGGGGATACCGAATTTCGCAAATAA-------AGCTT-----TT-CA-GTTGTACTTTTGGTAT-CAC-----GAAAGCTGTACAATGGTCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGG
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttaTTTCACTTT-TGAGTA--TGATGCCATCAATAATCG-----ACA-GCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGGA-CAATCCC-TACGA--CAT---T-C---AGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGACT-CAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAGA--GATCTTGG--AAATTGTCTGT-TA-CAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTA-----CCCGGTACATA-----GCTAACATACT-A-GGTCATAAC-ACTGAACTTG-TA---ATAA-CATTCTCTGTAG-C-TAGGAGGGGCTAC--AAA-GAGTGG-CTTCTTGAAAA---TAGGG-A--C-AAGAGGCT-TAT----GGTCAGTTTCTACTCTGAC-TTTGTGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAAAACTATAGCAAA-C------AT---TT-CCTT----CTCTAT-CTGTGCGTAACTGGATTTC-A-C-TCTGTGTG---AG-GCTCTTTGATGC--AAAA-GC--TAGGGCTGACTT----TCTTGCATTAATGTGGCA---CCAA--GCCCAT--ATTTTGAAGCG-TC-GCATT-G-AAG----AGTAG-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC--A----AAGGCA---TG--------AT--CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGTTCCAAACAAAATTCTACA----TC-TT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGA-A----AGGTA---GGTGCA-AA---TTTGA-TAAAA--TAGTTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATT--TGTT----TGTGGGGGTTTCTTC------T-A-------C-A---A-TCGC--T---GACACTTTGT-C--GGGATCTG-GTCCTACACC-CTTAGAGGT--TAG--TAAATGACCAAAGTATTTGACCT--TTG-TAACT-CCAACTT-CAA---GTTTGTCTTTATTCAGTTTAATGCCTTT----TC-GAG----TG--ACCT------TTTGAG-AACAGACCTC---AAGATTCGAT------CA-TGCTCTT-CTCTAGT-TCG--ACC--AACACTAGGATATC---GTCAA---CTAGGGC--AACGACGCCTTCTAG---GTCTTCA-----TA-ACATTCGT----CTATCTTTCTCTGGAATATGTCCTGA--GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCAAA--------GGTGTGTTAAAAG-TGA-T-AAGGTA-AGA-GGATGCTTCCGA-TAACTTGA-TAGTCCAATA---GCC---ACTCTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGGCTTTTTG-AAAGCTGA-GGTAGGA-CATCTTACAATGTTTTCATTG---AG--TAGTAGGGTCTCAG---T-ATTGCCTT-GTT---TAGGTCTTTAGGGTCtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|3 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaactATCAAGTCCATCAATAAT-GTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGA--GGGTAGGGGTCA----CATGA-CTTCATATTT-CAGGAGGCCAGCCATTCAGAATtagacat
gi|3 : ttgtgacctttacgtGGTAA-CTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCT-GGTATATAAATGAGCAATCA--AA-A-GGTCATAGTTGCTTGAGTTGATATGGC-AA-CATTCTTTGGAG-C-CGGGAGAAGGCGCATGAA-GGGT---TTTTTTAAAGAGTCT-GGA-A--C-A-GAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG---TGATA-AG--CGCTTGC--ATCGCCCAAAACAATTGCAAAGT------ATGCGTC-ACTT----CTCTATTCTGGGCGTATC-GCATATC-GGC-TCGGAGTTCACAGAGATTTTTGAGGC--ATAATGCAATA-GGCTCGC----CATTCTGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAATC-A-ACTTG-GAGTACTATTAA-TGCGTAG---CT-------GGTCAAAAATA--GCATA----AGAACG---TGACACTAGGGCG-CTAGCGGTTAG-AAATG-CTTCCGTAACCTCGTCAAAAAGC-TCATTTCTG----GGGTTCATCCCATGTAAATTTGTGCA----TT-TC---CATAGTGTTAAGGAGTCTACGCATGGGGAACTGGTTATCGTCTAGCACAT-AATTGCGGGGTGCACAACACTTTAGCTCAAGCTTA-GAGGTCAGTTCGCGAGAAGCAGTCTGTGAGCTCGGGCT--GTTG--C-TT----TGAGGAGGTCACTCCGGTGGCTCATTGGTCTC-G---AATAGC--TCAGGCCACTTT-TTC--GGTGTGGGTGTTCGATTCCACTTAGAGGTCGTGGA--ATGTGACCAAAATACTTGACCT--GTGCTAACTGCTTACTTGCCA---GTTT---TGTAT---GCCTAATGCTTTTGAACTCTGAGACGCTG--TTGTCTTTGCTTT-AGCGAAGGACCTTGCGAAGAG--GGCGCTGATCATTGCTCCTGCTCGGGTGTTGATACC--GA-ACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTCTT-CTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCAAATGGCGTTCGGGGTATTGAAAGTTGGTT-AA-ATA-TGA-T-ATTCCATCGATAAG---GA-T-GTCCAATAGAGACCC--A--CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGC-ACCTGTTAAGTTGCTGGAAGGAGCATCTTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGA-ATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|4 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac---TT-CCTT----TTCAAT-CTGTGCGTATCATGTTTCC-G-CATCAG--TA---AGTGCCCTC-GACGC--ATAA-GC--AA---TTGGCTTGTCATTTGGTAGAACTACAGCT---CCTA--GTCCGG--ATTTTGATGCA-TCCACACT-T-A--------CAA-TG---ACAGGTTTGTTCACA-TCGAAG-AA-AG--TA----AGAAC----TG--------GTG-CT-----TCAGATAAAAGTCTC-TTGATTTC-CTTGAATGCACTTTC-CTGACCCTG----GTCCC-TGTGGAATGTTACATCCTTC-CT---CA-AG-----AG-A--GTTCTAATGGGT--TGTGTGATT-ATCGACATCTTTGGTA---GGT-----A---TTTGG-CAAAG--TAGTTGATA-GTGC-CTAGTAGCCGT-TC-GA-CTC---CT----TT--C-TTGTCCTCTGGTGGCAGCATC------TTAG------T-A---A-TCGC--T---T-CAATTT-T-CCTGGGGTCGG-GTTTCACACC-TTCACACGA--TAAA--ATGTGTCCAATGTATGTGACTT--t
gi|5 : ag-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA-----CC-GGTACATA-----GCTAA-A--TT-ATGGTCATAAC-A-TGAACTTG-TA---A-AA--ATTCTCTGTAG-CCTAGGAGGGGCTGC--AAA-GAGTGG-CTTCTTGAAAA---TAGGA-A--C-A-AAGGCT-TA-----GGTCAGTTCCTACTCT-AC-TTTGTGA-----CGTGGTAAATGTACTG--ATGA-A-AG--CG-TTGT--GCT--CGAAAACTATAGCAAA--------AT---TTCCCTT----CTCTAT-CTGTGCGATACTGGATTTCAA-C-TCTGT-TG---AG-ACTCTTTGATGCAAATAA-GC--TATGGGTGACTT----CTTTGCATTAATGTGGCA---CCAA--GCCCAT--ACTTTGAAGCG-TC-GC-TT-G-AAG----AGTAAGTG---AC---CTT-TTCAGGGTCAGAA-CATTGC-TA----TAGACAGTTTG--------AC--TT-----TTAG-Tcgg
gi|6 : GGAGTTGCACGGTACTCCATGAGCGAAATATAAACATCAGAATTG-------CCTTCCTCGGCTTTCTTGAACATGTTTTTGATTGTTTGGACATAAAGCTCAGCT-TCCCCATTCG----ATTGAGGATAAC-GCGGACTTGAGGTAGT---ATGTATAAAGTCCCAATCCTG-T---G-CAAAGTCCTTGAATGT-TGCACTCGCAAATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACgttaaat
gi|7 : ggtgacagaccaaccccatcgataTCA-----AA-GCATTCAT----CTATCTTCTGCTGGAAGATGTCCTGG--GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCAAAT-------GGAGTGTTGAAGG-TAG-T-GA-GTAGAGA-TGATTCGTGGGA-GAGTCTGACC-GTCCAATA---CCCGGAG--CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGGC-ACCCG-AGACTTGA-GGGAGAA-TATCGTCCAACGTCCTCATCG---GA--TAATGTGGTCTCAT---G-ATGGCCTT-GTT---GAGTTGCATAGGATCCatagatttgaaa
gi|8 : TTTACCTT-TTCAAAGGCCTCATC-TTG----TGCAGCATCCCAAATAAA-TTCGG-A----TT-TGGA-CG-AT-----AACAGCATTCTCATGGGA--GCTGTTGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-TCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTACGATT--C-TT------TGGAGGTTGCATC------TCA-------T-GGATG-TTTT--T---GAC-CTTC-T-T--GGGGTCTG-GTTTAAAACC-GT--GCGAT--GAGATTATGTGACCGAAATAATCGAag
gi|9 : tacttCTCCTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGT-CCAAACAAAATTCTACA----TCTTT---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGAAA----GGTTA---GGTGCA-AA---TTTTG-ATAAA--TATGTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATTTGT-TT----TGTGGGGGTTTCTTC------T-A-------C-A---A-TCGC--T---GACACTTTGT-C--GGGATCTG-GT
blockSeqs : A T T C C TAT TCAG . C CG A GA AAGCTCA C TTAG T TAC A T GCAA AG C TC TTTAG G C . C G . T ACTA A A G C . . . . T TT . . G T C A GG T A G C T T C T C . . G ATCAA C ATGTTAGG AA G GT T ATCCCTACGA ATTTCAGG T T G TCT C TTCATC A T T G G C T C T . CCTT . TCTT G AT CGCAAC G G TA GGACCAGG GTATCCT AATGAGCAATCAAAA A TGC C A TGGC C . C A T T ATG . AA T T GTCTGGAA . A G TATC GG G G CA A TACGACCA CCA T T . CTCTA GC A C G CACTAGT GCG C AGAA T G TG GG A C AGTTCAC AGA T AA TGCAATAG GTCA T AGCC A AA C GT A AACTTGGAGTACTATTAATGCGTAG TG A G A GCATAAGAACGTGACACTAGGGCGCTAGCGG A T A C G A TTT ACCC A A T TTTCCATAGTGTTA T A A AA A G C CATAATTGCGG C CAC G CTC CT G AG G A G C G GGGCT TGT GTCCTC T T GGTGGCTCATTGGTCTCGAA C TCAG A A TCCT T T ACTTA CGT ATT T GTGC CTG T G A . GT TC GAACTCTGAGACGCTGTTGTCTTTGCTTTAGC C GCG GGGCGCTGAT T C G GTTGAT AAC G TCAT AAG G GAG AAT T CCCTT C TCGA T T G AC GAT T TAC A AT G A A CC TGGCGTTC A T T GAG GA . TA CT TA GAGA GGAG T GAAG GC G T AGT TT T TT T T G T T T CCAGGCC G T T CTTGA T C AAAG GG T G
blockSeqs : GT G GG CTT . . A GC . . A TA . . TG T G . . C . . GC G G T G TGA C ATCG G T . . CATGACTT TC G A C . . . . A . . C G . . . . C TTAC . . TG . CCC GCTAACATACTA G AC G . AT C . . G G T T . GG C C TCGAAAT . . . . CC T C C G CGTGG G . . . CTTGC . A T C GT . . . . T AT AA . T CGTC TGC T . GCTAGG CA A A A . G . . GCATTGAAGAGTAGTGAC T A G . TTGCTATAGACAGTTTGACTT . T A C . A AT . A A T TCCTTCCTCAAG T A A . A . C TCTTTGGTA . . A TA . G A . G G C . ACTAC TG TG A T TCATGGATG A T C A GTC . G CTTA T T C TTG CT T . C . . . TCGAGTGACCTTTTGAG A . TTCGAT . C . TCG GA . G . C A . C . . . C T A . GCA G TA C . T A T A T T . . AAG C . T TC CC G ACT A . . G T . A T A . A . T G G AG G T T GT A . T GG C A
blockSeqs : . . A . CC GCTAAATTAT A A C . A . . . A A C A . GG G A TAGACTC . . . . CT C G C G CCA A . . . TTGC . G A A T . . . . G TG A . G TGTG TT T . GCTATG . T T T . T . . CACACTTACAATGACAGG T A G . TGCAAAGGCATGATCT . T G C . A AT . A T T TTTGGACGAT T A T . T . C AGGTA . . G CA . T G . T . T . CT C TG G A TTAGTAA C T A A TTC . C TTCA T A T . . . . G T . TGA C GT C . T T C A T G . . AA A . G . T C CA T . . G . . A C A . G . G C C GA T T . TG G . G GT A A
blockSeqs : G T A . . A A TAGGGA . . . . GG G G C G CCG A . . . TTGT . C A T C . . . . T T A . A TTG GC T . GCAA . T A A . C . . GCTTGAAGAGTAAGTGAC . . . . AGTAAGAACTGGTGCT . A . C . C TC . A A T TCTTTTGAA C T T . G . A AACTC . . T TC . T A . T . C . A C TG G A TACAA T T A A GTC . A GT G A A A . ATT C AG T . G T T A . A . . GA T .
blockSeqs : G A TAGGAA . . . . CT C . . . . . . . . AC . G A A . . . . . T G G . T TA AC . . . A TC . . A G TCTTTTGAG T T T . T . . GGTTA . . T AT . . A . A . . . A C . T T TACAA C T . . TT .
blockSeqs : . . . . AT . . . T TCTTTGAG . A A . A .
blockSeqCons : GG* ** TTGC*** TG GCAAG**** **** GCNTCGAANANTAGCGAC************** GCAAAGACGTGACGCT************************* TCTTTCGAG************* TG**** TNCAA******************* T***** GTC*** NTCA* A** GA**
originalCons : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATTCG----ATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAA-GC--TA-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TC-GCACT-G-AAG----ANTAA-TG---AC---CTT-TTCAGGGTCAAAA-TA-TGC-TA----AAGACG---TG--------GCG-CT-----TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCA----TC-TT---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCNTC------TCA-------C-G---A-TCGC--T---GACACTTT-T-C--GGGGTCTG-GTTTNACACC-CTTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-T-AA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
finalCons : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATTCG----ATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CGTTGC---ATC--CGAANACAATNGCAAA-C------AT---TT-CCTT----CTCTAT-CTGNGCGTAACTGGATTTC-G-C-TCNGNGTN---AGTGCCCTTTGATGC--ATAAGCAAG----GCTGGCTT----TTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-TCGCNTCGAANANTAGCGAC--------------CTT-TTCAGGGTCAAAA-TAGCAAAGACGTGACGCT-------------------------TTAG-TAATGACCTCCTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCATCTTTCGAG-------------AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TTTG----TGGAGGTTGCNTCTNCAA-------------------TCGCT-----GACACTTTGTC---GGGGTCTG-GTTTNACACCNTCA-GAGGT--TAGA--ATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-TGA--ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA
Alignments
lowQualScore : 222 2222 3333333 1 11 2222222 2222 3333 1 11 3333333 1 1 1 1 222222 3333333 22222 1 1 1 1 22222 11 1 1 1 1 444444444 11 33 1 4444444444444 222222222 222 333333 1 22222 2222 11 2222 111111 1 1 33333333 22222222 3333333333333333333 111 1 22222 11 1 1 111 222222222222 1111 2222222222 111 1111111 22222222 111 1111 11 11 1111111 111 11 1 333333 3333 1111 11 11 2222222222 33333333333333 55555555555555555555555555555555555555 333333333333 1111 22222222222222222 222222222222 111 1 4444444 1111 222222 4444444444444444 2222 3333333333 11 111 22 222222 111 222 22 11 88888888888888888888888888888888888 555555555555 1 1 333333 22222 2222 222 111 222 22222 1 2222 1 11 111 11 33333333 1 11 333 1111 444444 2222 11 111 11 11 1 1 2222222 222222 1 1111
lowQualScore : 1 1 1 1 1 222 3333 1111111 5 22 1 00 8888888 6 8888 1 999 7 7 2222 22 3 88 8888888 1 1 3 3 1 3 3 0 777777 3 1 1 0 1 0 0 1111111 66666 5 5 5 22 5 77777 1 1 1 1 77 1 1 2 5 1 1 1 5 1 5 5 1 99999 6 333333333 99 1 44 3 5555555555555 777777777 1 3 1 333 6 888888 7 1 7 6 1 1 0 0 7 0 6 3 77777 3333 88 4444 6 88 444444 0 0 0 88 66666666 99999999 6666666666666666666 1 666 1 0 44444 22 0 0 0 1 1 3 222 8 999 1 1 000000000000 6 6 6 4444 22 1 5 77 1 0000000000 333 6 6 99 8888888 99 2 1 1 99999999 000 6 4444 6 1 44 44 6 1 3333333 777 3 11 6 222222 4444 0 1 5555 6 11 1 11 8 3333333333 1 1 33333333333333 666666 8 8 22222222222222222222222222222222222222 8 3 222222222222 5 4 555 2222 0 0 5 0 1 1 0 7 99999999999999999 0 2 1 0 1 77 1 5 2 666666666666 6 111 1 888 99 7 77 6 1 3 3 6 7777777 1111 444444 0 1 2222222222222222 3333 2 6666666666 6 6 1 99 77 0 111 22 1 111111 999 7 6 1 333 00 11 44444444444444444444444444444444444 3 888 111111111111 3 6 2 222222 88888 6 7777 333 3 999 0 333 1 55555 0 1111 0 2 1 0 11 333 1 000 1 11 1 0 1 1 99 22222222 1 8 8 1 6 99 8 0 00 11 77 444 8888 888888 1 1111 33 2 3 777 11 4 11 0 1 0 0 1 0 1 1 3333333 1 3 9 888888 1 0 8888 22 0 1 1
lowQualScore : . . . . . ... .... ....... . .. . .. ....... . .... . ... . . .... .. . .. ....... . . . . . . . . ...... . . . . . . . ....... ..... . . . .. . ..... . . . . .. . . . . . . . . . . . . ..... . ......... .. . .. . ............. ......... . . . ... . ...... . . . . . . . . . . . . ..... .... .. .... . .. ...... . . . .. ........ ........ ................... . ... . . ..... .. . . . . . . ... . ... . . ............ . . . .... .. . . .. . .......... ... . . .. ....... .. . . . ........ ... . .... . . .. .. . . ....... ... . .. . ...... .... . . .... . .. . .. . .......... . . .............. ...... . . ...................................... . . ............ . . ... .... . . . . . . . . ................. . . . . . .. . . . ............ . ... . ... .. . .. . . . . . ....... .... ...... . . ................ .... . .......... . . . .. .. . ... .. . ...... ... . . . ... .. .. ................................... . ... ............ . . . ...... ..... . .... ... . ... . ... . ..... . .... . . . . .. ... . ... . .. . . . . .. ........ . . . . . .. . . .. .. .. ... .... ...... . .... .. . . ... .. . .. . . . . . . . . ....... . . . ...... . . .... .. . . .
lowQualScore : 0 0 0 0 0 000 5555 5555555 0 00 0 33 0000000 7 3333 0 333 3 3 3333 00 3 33 0000000 0 0 3 3 0 3 3 7 333333 7 0 0 7 0 7 7 5555555 55555 5 0 5 00 5 00000 0 0 0 0 55 0 0 5 0 0 0 0 5 0 0 0 0 77777 7 000000000 33 0 00 3 7777777777777 777777777 0 7 0 333 7 333333 3 0 3 7 0 0 7 7 3 7 7 3 00000 5555 55 0000 7 33 777777 0 0 2 22 22222222 00000000 8888888888888888888 2 888 0 0 55555 55 8 0 0 2 0 8 444 0 444 0 0 555555555555 7 7 7 2222 00 0 2 77 0 5555555555 333 7 7 22 3333333 22 2 0 0 55555555 000 7 2222 7 0 33 00 7 0 7777777 888 5 00 0 000000 0000 6 0 4444 0 00 0 00 0 6666666666 0 0 22222222222222 222222 0 0 00000000000000000000000000000000000000 0 8 777777777777 7 9 999 1111 7 4 0 1 7 4 7 9 99999999999999999 7 7 0 7 0 99 0 7 5 888888888888 7 777 0 000 22 2 33 7 0 3 7 7 5555555 2222 000000 3 0 7777777777777777 7777 5 8888888888 7 7 0 00 00 6 666 00 0 888888 000 3 7 0 333 77 00 00000000000000000000000000000000000 7 777 333333333333 3 7 0 777777 33333 7 0000 333 7 000 7 333 0 00000 0 2222 8 5 0 8 00 444 0 444 0 00 0 6 4 4 00 00000000 4 0 0 4 0 00 0 8 55 22 22 222 2222 888888 0 2222 88 5 2 555 00 2 00 0 0 2 0 0 2 0 0 2222222 0 2 2 000000 2 0 5555 88 2 2 2
consensus : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATTCG----ATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TTCC-TT----CTCTAT-CTGNGCGTAACTGGATTTCG-C-TCNGNGTN---AGTGCCCTTTGATGCA--TAA-GC-AAT-GGCTGGCTTG-CATTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-T---CG-CTTGGAANANT-A-----GC-G-ANCTTTTCAGGGTC-AAAA-TAT-GC-A-AAGA-CA---TGACGCT-------------TTAG-TAATGACCTC-----------CTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCATCTT---T---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCN---------------TCT--NCAATNGCT---GNC----ACTTTCTCGGGGTCTG-GTTTNACACCN-TTAGAGGT--TAGATTATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-TGAGATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
Reference ( family-4234 ) : NAAGGGGNGTNGCACGGTACNCNATGAGNGAAATATGAACATCAGAATTGTGCCCATCCTTCCTCGGATTTCTTCAACATNNTCTTNGCTGTCTGGACATAAA-CTCAGTTCTCCCAATTCG----ATTGAGGATANCTGCGGACTTGAGGTAGTG--ATGNNTAAAAT-CCAA--CTG-T--GG-CAAAGTCCNTAAATNC-TG-ACTNGAATATTG-GGG-CCGTTATC--GC--ACGACTTTNGTAGGNATACCGTGTCTNGCGAACGACTCCAGTAGCTTAGTGATTACACGCTGTGCTNNTGGTGTTCACTTCTTGAGGNCTGNANANTGGTCGAAGNATCTGCTATAATAGTCNGCGACAATCGAGAAAGTCNTNGTCGTCCCACGTNAACAGATTCAGTGGCNACAACTTGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGCTTCGTGANTAATCGAGTCCATCAATAAT-G-----ACAAGTTCATCNCTATGGTTCCAAAATTCTATGA-TGAGTAGGGA-CA----C-TGAGC--CATGTTT-C---AGGCCANCCGTTNAGGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGNTTTCCTGTCTGATTTNTTNAAAATATAAATCGCTAATTGGTAAGGCGCTAGATACCGTATGGACTTG-GGCTTCAAGATCATCCCTTTGAGATAGATCTTGGGTAAANTGTCTGN-CAACAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGCTTA-----CC-GGTACATA-----GCNAACA--CT-A-GGTCATAAC-GCTGAANTTG-TA---A-AA-CATTCTCTGTAG-C-TAGGAGGNGCTGC--GAA-GAGTGG-CTTCTTNANAA---T-GGA-A--C-A-GAGGCT-TGT----GGTCAGTTTNNACTNTGAC-TTTGCGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAANACAATNGCAAA-C------AT---TTCC-TT----CTCTAT-CTGNGCGTAACTGGATTTCG-C-TCNGNGTN---AGTGCCCTTTGATGCA--TAA-GC-AA--GGCTGGCTT----TTTTGCATTAATGTGGCA---CCAA--GNCCAT--ATTTTGAAGCG-T---CG-CNTCGAANANT-A-----GC-G-ACCTTTTCAGGGTC-AAAA-TA--GC-A-AAGA-CG---TGACGCT-------------TTAG-TAATGACCTC-----------CTTGACCTT-TCTAAATGCACCANC-CTG----TGCAGCGTCCCAAACAAAATTCTGCATCTT---T---CG-AG-----AGCAGCGTNCGCANGGGG--CTTGTNATT-TCTGACA----AGNTA---GGTGCA-AA---TTTNG-TCAAA--TATGTGATC-GTGC-CNAGCA-CAGTCTCTAA-CTCG--CTA-GATT--C-TT----TGTGGAGGTTGCN---------------TCT--NCAATCGCT---GAC----ACTTTGTCGGGGTCTG-GTTTNACACCN-TCAGAGGT--TAGA--ATGTGACCGAAATANTCGACCT--GTGCTAACT-CCTACTTGCNA---GTTT-TCTGTATTCAGCTTAATGCCTTT---CTC-GAG--GCTG--TCGT------TTT-AG-AACGGACCTCGCGAAGA---GGTGC----CA-TGCTCCTGCTCTAGT-TTG-TACC--GA-ACTAGGATATC---GTCAA---CTACGGC--GACGACGCCCGGTAA---GTCNTCA-----AA-GCATTCGT----CTATCTTNCGCTGGAATNCGTCCTGG--GANNACTTNA-GNCCAAATGGNAATC--TNAGATACCTATACCT-ACCAAAT-------GGGGTGTTGAAGG-TGG-TGA-ATA-AGA-TGATTCTTCCGA-AAGCTTGA-C-GTCCAATA---ACCG--A--CNGGC----ATCTAG--CTTTGGTGAAGAA---CTTGGC-NCCCG-NAAGTTGA-GGNAGGA-CATCNTCCAGNGTTCTCATNG---GG--TAGTGNGGTCTCAC---G-ATAGCCTT-GTT---NAGGTCCTTGGGATCCCAGATCAT
gi|1 : AAGGGGTGTAGTACGATACGCAATAAGGGAAA-A-GAACA----AATTGTGCCCATCCTTCTT-GGATTTTGTCAACATTCTCTTTGCTGTCT--ACATGAA-C--AGTTCTCTCAATTTG----ACTGGAGATACCTG-GGACTTGAGGTACTG---TGGTTAAAAT-TCAA--CTGAT--GGGCAAAGTTCCTAAATTCATG-ACTAGAATACTGCGGA-CCATTATCCGAC--ACTACTTCCTCAGGAATGCCATGTCTAGAAAATGACTCCAGTAGCTTAGTGATTACACGCTG-GCTAGTGGTGTTCACTTCTTGAGGCTTGAAAACT--TCAAAGAATCTGCTATAATAATCTACTACAAT-GAGAAAGTCGTGGTCGTCCCATGTAAATAGA-TCAGTGACAATAACTTGCCATGG
gi|1 : ggtgaaagacctatgttTTTCGCTTCGTGACTAATTG-GTC-ATAAATG---G-----ACAA-TTCATCCCTGAAGTTCCAAAACTCTCTGACTGAGTATGGA-CA----T-TGAGC--CATGTTTTC---AGGCCAACCGTTTAAGATAATG---CTAGATAGAGTGACTAACTG------AGGGTCAAGGGTGGTTTCCTGTCTGATTTTTTAAAGATATAAATTGCTAATTGGTAAGGTGCTAGATACCATATGGACTTG-GGCTTCAAGATCATC----TGAAATAGA----GGGTAAAGTATCGGG-CAA-ATAC-TTT-CTCGACAGAGTGTCTGCTAG--------TGGAATTTTCTTA-----CCAGGGACATGT----GCGAG-A--CTAA-GGGAATATC-TCTGAAGCTG-CA---A-AATCATACGCTGCAATC-TTGCAGGTGC--A--GAATGTATGGACTTCTGCATAA---T-TGACA--CTA-AGGGTT-TGT----GATCAGTTTGAACTGTAAT-ATTCCTA-----CC--ATAAATGTACTG--GTGG-A-AGTACG--GGC--ATC--CAAACACAATAGCGTA-C------AT---TTCT-TT----TTCGAT-CTGGGCATAATT-GATTTCA-C-TAGGAGTC---AGTG-CCTTAGATGCA--TAACAC-A-----CTGGTTTGCCATCCTGCAGTAAGGTGGCT---CC-A--GACCAT--GCTTTGAAGCA-T---CT-ACTGTAATACT-A------T-G-TACTTCTGTGGATC-AAAA-TA--TG-A-TAGA--A---TGAGGCT------------------TGGTGACCTTATAAGAATATATTTGACCTT-TTCAAATGCCTCATC-TTG----TGCAGCATCCCAAAT-AAACTC-GGA--TT---TGGACG-AT-----AACAGCATTCTCATGGAA--GCTGTCGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-CCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTATGATT--C-TT------TGAAGGTTGCA---------------TCT--C--ATGGAT---GGCTTTGACCTTCTTGGGGTCTG-GTTTTACACCT-T--GCGAT--GAGATTATGTGACCGAAATAATCAACCTCAGT-TTGA---CCTAC-TGCTATTTTTTT-TCTGAATTTAGCTTGATACCCTT---CTC------GCTGCATCGT------TCT----AATGCAGCACGCAAATG---GGTGC----CA-TG-TTCTACCTTAGT-CT--TACCATAG-ACAAGAACATC---ATCAA---CTATGGC--AACAAGGCCTGGTAA---GTCATCA-----AA-GCATTCGT----CAATTTTACGCTGAAATTCATCCTGG--GATGACTTAA-GACCAAACGGGAGTC--TCAAAAACTTATACCT-TCCATAA-------GGGGTGTTGAAGG-TAG-TCA-ATG-AGCTTGACTCTTCTGA-AAGCTTGAGG-GTCCAGTA---ACCACTA--CGGGC----ATCTAA--TTTT-GTGAAGAA---CTTTGC-TTCAG-CAAGTTGA-GGTAGCA-CATCATTGAGGGTTTTCATGG---GA--TAATGTGG--GCGC---GAATAGCCTT-GTT---TA-ATTCTTGGGTTCCggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctatttcgcttcgtgactaattggtcataaatggacaattcatccctgaagttccaaaactctctgactgagtatggacattgagccatgttttcaggccaaccgtttaagataatgctagatagagtgactaactgagggtcaagggtggtttcctgtctgattttttaaagatataaattgctaattggtaaggtgctagataccatatggacttgggcttcaagatcatctgaaatagagggtaaagtatcgggcaaatactttctcgacagagtgtctgctagtggaattttcttaccagggacatgtgcgagactaagggaatatctctgaagctgcaaaatcatacgctgcaatcttgcaggtgcagaatgtatggacttctgcataattgacactaagggtttgtgatcagtttgaactgtaatattcctaccataaatgtactggtggaagtacgggcatccaaacacaatagcgtacatttctttttcgatctgggcataattgatttcactaggagtcagtgccttagatgcataacacactggtttgccatcctgcagtaaggtggctccagaccatgctttgaagcatctactgtaatactatgtacttctgtggatcaaaatatgatagaatgaggcttggtgaccttataagaatatatttgaccttttcaaatgcctcatcttgtgcagcatcccaaataaactcggatttggacgataacagcattctcatggaagctgtcgcttctgacaaactcggtgcaaattttgccagatatgtgatcatgcctagcacagtttctaactcactatgattctttgaaggttgcatctcatggatggctttgaccttcttggggtctggttttacaccttgcgatgagattatgtgaccgaaataatcaacctcagtttgacctactgctattttttttctgaatttagcttgatacccttctcgctgcatcgttctaatgcagcacgcaaatgggtgccatgttctaccttagtcttaccatagacaagaacatcatcaactatggcaacaaggcctggtaagtcatcaaagcattcgtcaattttacgctgaaattcatcctgggatgacttaagaccaaacgggagtctcaaaaacttataccttccataaggggtgttgaaggtagtcaatgagcttgactcttctgaaagcttgagggtccagtaaccactacgggcatctaattttgtgaagaactttgcttcagcaagttgaggtagcacatcattgagggttttcatgggataatgtgggcgcgaatagccttgtttaattcttgggttcctt
gi|10 : ggtgaaagacctatgttaaggggtgtagtacgatacgcaataagggaaaagaacaaattgtgcccatccttcttggattttgtcaacattctctttgctgtctacatgaacagttctctcaatttgactggagatacctgggacttgaggtactgtggttaaaattcaactgatgggcaaagttcctaaattcatgactagaatactgcggaccattatccgacactacttcctcaggaatgccatgtctagaaaatgactccagtagcttagtgattacacgctggctagtggtgttcacttcttgaggcttgaaaacttcaaagaatctgctataataatctactacaatgagaaagtcgtggtcgtcccatgtaaatagatcagtgacaataacttgccatggggttctctgggtttagagttgcggtgagtgagacatgtagtgcaactaagtgtcatatctcgtatttgttgcgaggtaccaggccagagcatagaatctcgagcccgtcgtagggttttttcaacccctgggtgaccggtatgcagctttagtatcatttcagattgcatagatttaggtataactattctaTCTGTATAA---T-CGA-AATC-A-GAGGTT-TGT----GATCAGTTTGGACTGGGA---------------------AATGT-CTACCATAA-ATAG--TG---AC--ATC--CAAACACAATGGCATA-CACTAGTAT---TTCT-TTAGAACACTAT-TTGGGCATCACT-GATTTCA-C-TACGCGTC---AAT-TCTTTTGATGtt
gi|11 : GGTGCTGC--TAA-CAGCAA-CTTCTTCCCAA---T-AGA-CTCC-A-AGGGCT-TGT----GGTCACTGTCCACTTTCAC-TTGACGT-----CC--ATAAGTGTACTA--GTGA-A-AA--CG-CT-CTAATC--CAAATACAATCGCAAG-T------AT---CTC
gi|12 : gtttttgcaatcttttgATGCG--CTGA--TAGATCTCTA-TACCAAATGGAAGTC--TGAGCTAGCGGAAACG-ACCAATT-------GGAGTAATGAAGG-TGG-TGAGATA-CGA-TGATTCt
gi|13 : ATAATG---CTAGATAGAGTGACTAGCTG------AGGGCCAAGGGTGTTTTCCTGTCTGATTTGGTCAAAATATAAATTGCTAATTGGTAAGGCGCTAGATACCATATGGACTTG-GGCTTattatcgagtcttatctgcatgtaaccggattttgcgt
gi|14 : ATGACCTC-----------CTTGACCTT-TCTAAATGCATCAAT-CTG----TGCAGTGTCCC-AACAGAATTCTACATCTT---T---TG-AA-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTG
gi|2 : GATTTCTCCAATATCGGCTTAGCAACCTGAACATA---CTT--TTCTGCCAATCCGTTAGATTGAGGATGTCTACGG----GAGG-AGTGCAATGAGCAAAAT-CATA--CTG-TTTAG-CAAAGTCTGCAAATCC-TG-GGAGGAATATTG-GGG-CCATTGTC--GC--ACAACCTTAGTGGGGATACCGAATTTCGCAAATAA-------AGCTT-----TT-CA-GTTGTACTTTTGGTAT-CAC-----GAAAGCTGTACAATGGTCGAAATATCTACTATAATAGTCAGTGACAATCAAGAAAATCTTTATTGTCCCACATCAACAAATTCAGTGGCCACAA-TTGCCATGG
gi|2 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttaTTTCACTTT-TGAGTA--TGATGCCATCAATAATCG-----ACA-GCTCATCGCTATGATTCCAGTATTCTAGGAGTGAAGAGGGA-CAATCCC-TACGA--CAT---T-C---AGGCCATCCTTTGAGGACAATATCTCTAAGTAAACTAA--AATTGTTCATCAGCATC-----TGACT-CAT-TTTGATTTCTCGTAATTACCTATCACTAATAGGCAAGTTGACAGA-ACTGAATGTA-TTGTAGCTTC-----CATCCCTTTGAGA--GATCTTGG--AAATTGTCTGT-TA-CAAAG-TTT-CGGGACAGAGTATCTGTAAC--------TGGGATTTGTTTA-----CCCGGTACATA-----GCTAACATACT-A-GGTCATAAC-ACTGAACTTG-TA---ATAA-CATTCTCTGTAG-C-TAGGAGGGGCTAC--AAA-GAGTGG-CTTCTTGAAAA---TAGGG-A--C-AAGAGGCT-TAT----GGTCAGTTTCTACTCTGAC-TTTGTGA-----CC--GTAAATGTACTG--ATGA-A-AG--CG-TTGC--ATC--CGAAAACTATAGCAAA-C------AT---TTCC-TT----CTCTAT-CTGTGCGTAACTGGATTTCA-C-TCTGTGTG---AG-GCTCTTTGATGCA--AAA-GCTAG--GGCTGACTT----TCTTGCATTAATGTGGCA---CCAA--GCCCAT--ATTTTGAAGCG-T---CG-CATTGAAGAGT-A-----GT-G-ACCTTTTCAGGGTC-AAAA-TAT-GC-A-AAGG-CA---TGAT-CT-------------TTAG-TAATGACCTC-----------CTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGTTCCAAACAAAATTCTACATCTT---T----G-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGA-A----AGGTA---GGTGCA-AA---TTTGA-TAAAA--TAGTTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATT--TGTT----TGTGGGGGTTTCT---------------TCT--ACAATCGCT---GAC----ACTTTGTCGGGATCTG-GTCCTACACCC-TTAGAGGT--TAGT--AAATGACCAAAGTATTTGACCT--TTG-TAACT-CCAACTT-CAA---GTTTGTCTTTATTCAGTTTAATGCCTTT----TC-GAG----TG--ACCT------TTTGAG-AACAGACCTC---AAGATTCGAT------CA-TGCTCTT-CTCTAGT-TCG--ACC--AACACTAGGATATC---GTCAA---CTAGGGC--AACGACGCCTTCTAG---GTCTTCA-----TA-ACATTCGT----CTATCTTTCTCTGGAATATGTCCTGA--GAGCATTTGA-GTCCGAATGGCAACC--TTAGATACCTAAATCT-ACCAAA--------GGTGTGTTAAAAG-TGA-TAAGGTA-AGA-GGATGCTTCCGA-TAACTTGA-TAGTCCAATA---GCC---ACTCTGGC----ATCTAG--CTTTGGTGAAGAA---TTTGGCTTTTTG-AAAGCTGA-GGTAGGA-CATCTTACAATGTTTTCATTG---AG--TAGTAGGGTCTCAG---T-ATTGCCTT-GTT---TAGGTCTTTAGGGTCtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaacttttcacttttgagtatgatgccatcaataatcgacagctcatcgctatgattccagtattctaggagtgaagagggacaatccctacgacattcaggccatcctttgaggacaatatctctaagtaaactaaaattgttcatcagcatctgactcattttgatttctcgtaattacctatcactaataggcaagttgacagaactgaatgtattgtagcttccatccctttgagagatcttggaaattgtctgttacaaagtttcgggacagagtatctgtaactgggatttgtttacccggtacatagctaacatactaggtcataacactgaacttgtaataacattctctgtagctaggaggggctacaaagagtggcttcttgaaaatagggacaagaggcttatggtcagtttctactctgactttgtgaccgtaaatgtactgatgaaagcgttgcatccgaaaactatagcaaacatttccttctctatctgtgcgtaactggatttcactctgtgtgaggctctttgatgcaaaagctagggctgactttcttgcattaatgtggcaccaagcccatattttgaagcgtcgcattgaagagtagtgaccttttcagggtcaaaatatgcaaaggcatgatctttagtaatgacctccttgacctttctaaatgcaccaatctgtgcagtgttccaaacaaaattctacatctttgagagcagtgtacgcaaggggcttgtaatttctgaaaggtaggtgcaaatttgataaaatagttcaccatgccaagcagagtctctaactcagatttgtttgtgggggtttcttctacaatcgctgacactttgtcgggatctggtcctacacccttagaggttagtaaatgaccaaagtatttgacctttgtaactccaacttcaagtttgtctttattcagtttaatgccttttcgagtgaccttttgagaacagacctcaagattcgatcatgctcttctctagttcgaccaacactaggatatcgtcaactagggcaacgacgccttctaggtcttcataacattcgtctatctttctctggaatatgtcctgagagcatttgagtccgaatggcaaccttagatacctaaatctaccaaaggtgtgttaaaagtgataaggtaagaggatgcttccgataacttgatagtccaatagccactctggcatctagctttggtgaagaatttggctttttgaaagctgaggtaggacatcttacaatgttttcattgagtagtagggtctcagtattgccttgtttaggtctttagggtctagacat
gi|3 : aaaggggtagtgcgatactctaagacacctagcagtggatcacgaccgtcatatttagatttctccaatatcggcttagcaacctgaacatacttttctgccaatccgttagattgaggatgtctacgggaggagtgcaatgagcaaaatcatactgtttagcaaagtctgcaaatcctgggaggaatattggggccattgtcgcacaaccttagtggggataccgaatttcgcaaataaagcttttcagttgtacttttggtatcacgaaagctgtacaatggtcgaaatatctactataatagtcagtgacaatcaagaaaatctttattgtcccacatcaacaaattcagtggccacaattgccatggtagtcgggattgggtgtggctaagtggctcttttgggtttgatggtctgtgtttctgacagatatcacagtttgaaactaatctggtacatgtaatatcaactgatatttttggccaaagtcagagcagcgtgcctcgcgaatgcatttctaatgcccatgtgaccttgatgtatgcaatctaatatcttttggccttagtgaacggggaatcaagaactATCAAGTCCATCAATAAT-GTTAGGACAAATTCATCTCTATGGTTCCAAAATTCTATGA--GGGTAGGGGTCA----CATGA-CTTCATATTT-CAGGAGGCCAGCCATTCAGAATtagacat
gi|3 : ttgtgacctttacgtGGTAA-CTGTTTGCGCAACAAAGGTTTGCGAGACAGTACATTTGTGGCGGACCAGGCGGAATTAGCTTAGTATCCT-GGTATATAAATGAGCAATCA--AA-A-GGTCATAGTTGCTTGAGTTGATATGGC-AA-CATTCTTTGGAG-C-CGGGAGAAGGCGCATGAA-GGGT---TTTTTTAAAGAGTCT-GGA-A--C-A-GAGGTTGCGTTATCGATCTGATTGGACCGTGACATTTGCGATACGACC--ATAAATATAATG---TGATA-AG--CGCTTGC--ATCGCCCAAAACAATTGCAAAGT------ATGCGTCAC-TT----CTCTATTCTGGGCGTATC-GCATATCGGC-TCGGAGTTCACAGAGATTTTTGAGGCA--TAATGC-AATAGGCTCGCCA----TTCTGCATTAAAGTGGCAGCCCCAAAAGGCCATGTATTTAGAAGCAAT---CAACTTGGAGTACT-ATTAATGC-GTAGCT------GGTC-AAAAATA--GC-ATAAGAACG---TGACACTAGGGCGCTAGCGGTTAG-AAATG-CTTC-----------CGTAACCTCGTCAAAAAGC-TCATTTCTG----GGGTTCATCCCATGTAAATTTGTGCAT-TT---C---CATAGTGTTAAGGAGTCTACGCATGGGGAACTGGTTATCGTCTAGCACAT-AATTGCGGGGTGCACAACACTTTAGCTCAAGCTTA-GAGGTCAGTTCGCGAGAAGCAGTCTGTGAGCTCGGGCT--GTTG--C-TT----TGAGGAGGTCACTCCGGTGGCTCATTGGTCT--CGAATAGCTCAGGCC----ACTTTTTCGGTGTGGGTGTTCGATTCCACTTAGAGGTCGTGGA--ATGTGACCAAAATACTTGACCT--GTGCTAACTGCTTACTTGCCA---GTTT---TGTAT---GCCTAATGCTTTTGAACTCTGAGACGCTG--TTGTCTTTGCTTT-AGCGAAGGACCTTGCGAAGAG--GGCGCTGATCATTGCTCCTGCTCGGGTGTTGATACC--GA-ACTA-GATGTCTCATTCAAAAGCTCCGGCGAGATGACGCCCGGTAAAATGACCTCACCCTTAACGCATTCGTTCGACTTTCTT-CTCCGAATTTCATCCTTGACGATGATTTCATACCCAAAAGCCAATCATTTAAATACCTATACCTCCCCAAATGGCGTTCGGGGTATTGAAAGTTGGTTAA-ATA-TGA-T-ATTCCATCGATAAG---GA-T-GTCCAATAGAGACCC--A--CAGGCGAAGGTCAAGGCTTTTGGTGAAAAAAGTTTTGGC-ACCTGTTAAGTTGCTGGAAGGAGCATCTTCCAGGGGTCTCATGGCCAGGCCTAGTGGGCTC-CACTTGA-ATAGCTTTCGTTAAAGAGGTCCCTGGGATCTCAGATCATtgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtacggtaactgtttgcgcaacaaaggtttgcgagacagtacatttgtggcggaccaggcggaattagcttagtatcctggtatataaatgagcaatcaaaaggtcatagttgcttgagttgatatggcaacattctttggagccgggagaaggcgcatgaagggtttttttaaagagtctggaacagaggttgcgttatcgatctgattggaccgtgacatttgcgatacgaccataaatataatgtgataagcgcttgcatcgcccaaaacaattgcaaagtatgcgtcacttctctattctgggcgtatcgcatatcggctcggagttcacagagatttttgaggcataatgcaataggctcgccattctgcattaaagtggcagccccaaaaggccatgtatttagaagcaatcaacttggagtactattaatgcgtagctggtcaaaaatagcataagaacgtgacactagggcgctagcggttagaaatgcttccgtaacctcgtcaaaaagctcatttctggggttcatcccatgtaaatttgtgcatttccatagtgttaaggagtctacgcatggggaactggttatcgtctagcacataattgcggggtgcacaacactttagctcaagcttagaggtcagttcgcgagaagcagtctgtgagctcgggctgttgctttgaggaggtcactccggtggctcattggtctcgaatagctcaggccactttttcggtgtgggtgttcgattccacttagaggtcgtggaatgtgaccaaaatacttgacctgtgctaactgcttacttgccagttttgtatgcctaatgcttttgaactctgagacgctgttgtctttgctttagcgaaggaccttgcgaagagggcgctgatcattgctcctgctcgggtgttgataccgaactagatgtctcattcaaaagctccggcgagatgacgcccggtaaaatgacctcacccttaacgcattcgttcgactttcttctccgaatttcatccttgacgatgatttcatacccaaaagccaatcatttaaatacctatacctccccaaatggcgttcggggtattgaaagttggttaaatatgatattccatcgataaggatgtccaatagagacccacaggcgaaggtcaaggcttttggtgaaaaaagttttggcacctgttaagttgctggaaggagcatcttccaggggtctcatggccaggcctagtgggctccacttgaatagctttcgttaaagaggtccctgggatctcagatcatt
gi|4 : ttgtgacctttacgtatcaagtccatcaataatgttaggacaaattcatctctatggttccaaaattctatgagggtaggggtcacatgacttcatatttcaggaggccagccattcagaattgtactttgattaaggggttctggatgtctatgtctatttatgcagactttgcaatttcgtcacgaacagcatctctagccttccggcttgtacaatgtggcacgcactaatgatgctgacacatgagagtcccaattgccctcctattcactggttggtac---TTCC-TT----TTCAAT-CTGTGCGTATCATGTTTCCG-CATCAG--TA---AGTGCCCTC-GACGCA--TAA-GC-AA----TTGGCTTGTCATTTGGTAGAACTACAGCT---CCTA--GTCCGG--ATTTTGATGCA-TCCACA-CTT---ACAAT-G-----ACAG-GTTTGTTCA-CATCGAAGA-AA--GT-A-AGAA-C----TGGTGCT-------------TCAGATAAAAGTCT------------CTTGATTTC-CTTGAATGCACTTTC-CTGACCCTG----GTCCC-TGTGGAATGTTACATCCTTCCT---CA-AG-----AG-A--GTTCTAATGGGT--TGTGTGATT-ATCGACATCTTTGGTA---GGT-----A---TTTGG-CAAAG--TAGTTGATA-GTGC-CTAGTAGCCGT-TC-GA-CTC---CT----TT--C-TTGTCCTCTGGTGGCAGCA---------------TCTTAGTAATCGCT---TCA----ATTTTCCTGGGGTCGG-GTTTCACACCT-TCACACGA--TAAA--ATGTGTCCAATGTATGTGACTT--t
gi|5 : ag-TTT-CGGGACAGAGTATCTG-AAC--------TGGGATTTGTTTA-----CC-GGTACATA-----GCTAA-A--TT-ATGGTCATAAC-A-TGAACTTG-TA---A-AA--ATTCTCTGTAG-CCTAGGAGGGGCTGC--AAA-GAGTGG-CTTCTTGAAAA---TAGGA-A--C-A-AAGGCT-TA-----GGTCAGTTCCTACTCT-AC-TTTGTGA-----CGTGGTAAATGTACTG--ATGA-A-AG--CG-TTGT--GCT--CGAAAACTATAGCAAA--------AT---TTCCCTT----CTCTAT-CTGTGCGATACTGGATTTCAAC-TCTGT-TG---AG-ACTCTTTGATGCAAATAA-GC-TAT-GGGTGACTT----CTTTGCATTAATGTGGCA---CCAA--GCCCAT--ACTTTGAAGCG-T---CG-CTT-GAAGAGTAA-----GT-G-ACCTTTTCAGGGTC-AGAA-CATTGCTA-TAGA-CAGTTTGAC-TT-------------TTAG-Tcgg
gi|6 : GGAGTTGCACGGTACTCCATGAGCGAAATATAAACATCAGAATTG-------CCTTCCTCGGCTTTCTTGAACATGTTTTTGATTGTTTGGACATAAAGCTCAGCT-TCCCCATTCG----ATTGAGGATAAC-GCGGACTTGAGGTAGT---ATGTATAAAGTCCCAATCCTG-T---G-CAAAGTCCTTGAATGT-TGCACTCGCAAATTG-AGGTCCGTTATC--ACTAACGACTTTGGTAGGTACACCATGTCTGGCGAACgttaaat
gi|7 : ggtgacagaccaaccccatcgataTCA-----AA-GCATTCAT----CTATCTTCTGCTGGAAGATGTCCTGG--GAATTCTTCA-AGCCAAATGGTAAGC--GGAGATAGCGGTATCT-ACCAAAT-------GGAGTGTTGAAGG-TAG-TGA-GTAGAGA-TGATTCGTGGGA-GAGTCTGACC-GTCCAATA---CCCGGAG--CTAGC----ATCTAG--CTTCGA-GAAGTA---CTTGGC-ACCCG-AGACTTGA-GGGAGAA-TATCGTCCAACGTCCTCATCG---GA--TAATGTGGTCTCAT---G-ATGGCCTT-GTT---GAGTTGCATAGGATCCatagatttgaaa
gi|8 : TTTACCTT-TTCAAAGGCCTCATC-TTG----TGCAGCATCCCAAATAAA-TTCGG-AT--T---TGGACG-AT-----AACAGCATTCTCATGGGA--GCTGTTGCT-TCTGACA----AACTC---GGTGCA-AA---TTTTG-TCAGA--TATGTGATC-ATGC-CTAGCA-CAGTTTCTAA-CTCA--CTACGATT--C-TT------TGGAGGTTGCA---------------TCT--C--ATGGAT---GTTTTTGACCTTCTTGGGGTCTG-GTTTAAAACCG-T--GCGAT--GAGATTATGTGACCGAAATAATCGAag
gi|9 : tacttCTC-----------CTTGACCTT-TCTAAATGCACCAAT-CTG----TGCAGTGTCC-AAACAAAATTCTACATCTT---T---TG-AG-----AGCAGTGTACGCAAGGGG--CTTGTAATT-TCTGAAA----GGTTA---GGTGCA-AA---TTTTG-ATAAA--TATGTCACC-ATGC-CAAGCA-GAGTCTCTAA-CTC-----A-GATTTGT-TT----TGTGGGGGTTTCT---------------TCT--ACAATCGCT---GAC----ACTTTGTCGGGATCTG-GT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): CAATGCTTTAGACGCATATCATACAGGTTTGTCATCCTGCCATAGGGTAGTTCCTAGACCACGCTTTGA
Unaligned ( gi|16 ): CATCTGCAAGAACAAGGTTCATACCTTTTATGAACTGAAAA