lowQualScore : 11111111111111 222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 33333333 1 1 22222 1111 2222 11 11 1 444444444444444 111 11 2222222222 1 22 22222 1111 222222 22 4444 1 1 22 444 5555555555555 1111 555555555555 22222222 4444 1111111 11 11 11 11 11111 9999999999999999999999999999999999999 2222 11111 111 111 555555555 11 11 22 3333 1 1 1 2 4444 22222 11 1 11 222222 1 111111111 1 222222 33333333333 11 111 333 333333333 66666666666666 1 1 666666666666666666666666666666666666666666666666666666666666666666666 222222222222 111 11 777777777777777 111111 22222222 22 11 22222222 55555555555555555555555555555555555555 11 11 1 22 111 111 111111111 1 111111 555 22 111 111 1 1 1111 111 1 111 444444444444 11111 4444444444 2222222222 000000000000000000000000000000000000000000000000000000000000 111111111 2
lowQualScore : 111 00000000 0 0 55 88888 4444 3333 6 6 11 8 11 1 6 99 6 6 666666666666666 8 0 777 33 2 5555555555 0 0 6 3 77 8 8 22222 8 0 6 6 4444 6 8 0 333333 88 9999 5 0 00 8 88 8 8 000 3 8 3 8888888888888 2222 8 8 111111111111 1 99999999 8 2222 5 2222222 5 44 11 8 0 11 8 44 66666 1111111111111111111111111111111111111 99 5 3333 66666 111 777 222222222 33 33 33 7777 8 8 5 0 0 0 0 6666 0 8 6 99999 33 0 33 0 555555 8 5 111111111 3 6 111111 11111111111 8 44 555 111 6 6 6 0 0 55 666666666 0 88888888888888 5 88 2 3 0 6 8 8 0 111111111111111111111111111111111111111111111111111111111111111111111 6 000000000000 000 9 8 22 4 33 444444444444444 999999 0 1 99 3 44444444 99 44 0 11 8 0 99999999 55555555555555555555555555555555555555 77 11 66 7 2 3 6 5 5 77 77 5 5 00 5 8 99 8 8 8 222 99 5 000 5 888888888 0 66 6 0 0 0 333333 99 6 6 000 6 33 77 6 6 6 333 6 5 000 1 6 6 6 1 5 77 1 66 4444 000 66 66 2 4 88 111 888888888888 11111 4444444444 6 6 9999999999 9999 000000000000000000000000000000000000000000000000000000000000 1 888888888 0
lowQualScore : ... ........ . . .. ..... .... .... . . .. . .. . . .. . . ............... . . ... .. . .......... . . . . .. . . ..... . . . . .... . . . ...... .. .... . . .. . .. . . ... . . . ............. .... . . ............ . ........ . .... . ....... . .. .. . . .. . .. ..... ..................................... .. . .... ..... ... ... ......... .. .. .. .... . . . . . . . .... . . . ..... .. . .. . ...... . . ......... . . ...... ........... . .. ... ... . . . . . .. ......... . .............. . .. . . . . . . . ..................................................................... . ............ ... . . .. . .. ............... ...... . . .. . ........ .. .. . .. . . ........ ...................................... .. .. .. . . . . . . .. .. . . .. . . .. . . . ... .. . ... . ......... . .. . . . . ...... .. . . ... . .. .. . . . ... . . ... . . . . . . .. . .. .... ... .. .. . . .. ... ............ ..... .......... . . .......... .... ............................................................ . ......... .
lowQualScore : 333 33333333 0 0 00 88888 8888 7777 7 7 00 0 00 4 7 22 7 7 888888888888888 0 8 555 88 5 9999999999 8 8 7 3 77 0 0 88888 0 8 7 7 2222 3 0 8 000000 55 0000 0 0 55 0 88 0 0 000 2 0 8 8888888888888 6666 0 0 666666666666 0 00000000 0 8888 6 8888888 6 00 00 0 8 00 0 00 00000 2222222222222222222222222222222222222 00 0 2222 66666 777 555 555555555 88 88 88 4444 0 0 6 8 0 0 0 0000 8 0 5 55555 88 0 22 8 888888 0 0 000000000 8 0 000000 00000000000 0 44 222 777 7 7 7 8 8 88 666666666 2 22222222222222 0 88 8 0 8 0 0 0 8 777777777777777777777777777777777777777777777777777777777777777777777 7 666666666666 222 8 8 55 0 22 888888888888888 000000 3 0 22 2 22222222 22 66 8 00 0 8 00000000 44444444444444444444444444444444444444 99 99 99 1 5 5 7 0 0 99 99 7 7 88 2 5 22 0 0 0 666 22 7 000 0 444444444 4 99 6 1 1 1 333333 22 7 7 000 7 22 77 7 7 7 000 7 7 000 2 7 7 7 7 2 77 4 44 3333 000 99 99 5 4 22 777 555555555555 88888 0000000000 7 7 2222222222 3333 222222222222222222222222222222222222222222222222222222222222 7 555555555 0
consensus : ATGTTAT-TTTGTTGC-TAA---GTT-CTT-TTNGTAGTT-N--TGATGTTGA--T-GTGGAATCT-GAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AG-AAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCATT-AAAACAATA------GTTA-CATGTTTGATTA---CAGATTCAAA-CAGTA-TT-AA-AACAGAC-ACTGTAAC-AAAAGCA-TGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACATTA--CAGGCAGGCAG-T-GAT--TA-AT-----AATAAATGAATA--------ATCT-TGA-ATACGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGC-TATTCG-GA-C-AA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---GGGACTT---CCGGTTACTAAAG---AAAAA------GGGGGGGGG--GTA--AGCAA--GAGACTTAACACTAGC-AGA-TCTAATAAAACT-AATG-AAACAAAAAG--CAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTG--ATAT-AATAG-TTACATA----T-TG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAAT-GA-CAATACAGAA---A-------AT-GGC-ATC--TACATTTACA--AAAA-TCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGNTTTTTCATTTTGCACGGGAT-TTAGTTACGACAATGAAAACCGATT-AACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG-----TTG-CCGCTTTACA--AAGAAACTATAA-------------TATAC-AAAGT-AA-ATGATTTGAA-GAATATC-TAAAATTCTCAAAGTTNAGAAATAA-TACG--CCTATGC-AATAAA---T--CGTAAAACAG--AAAAACATGAATA--------TAAA--GAGCGCGCAGTGAAAAATT--G-ATACTAAAA--------AGTAAANNAGTAAAAATA----T--AAAAGTAC-T------T--CTTTAACCTGAAA--TCAGGACAG--GAGACGGAATTGTAAATTC-GTGACT-TTAT-TACTTGACG--TC--CA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCGAAAA-GAAGC-------T-ATTAT--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-T-TATA-ACGCGG-ACGGA-CA-GG-TAAATGAC-ATA-T-G-G-GAAA---TTAAGTTNTCT-TAACAAA-TTA-TACTAAAGATGTCGGCTTC-ATTGA-TT-GAAG-G--ACACTA---AT--TGA--TTTTCTCAGA-T-TTCAGAGACAAAA---CGCCAAAA---A--------GGGGGGGA---CAGAC---T--NCTCGACA-AAG-TA----------TAT-T--AACACG--------------------TA---TGTC-----CATG---ACAAAGA-ATAA-AAT---ATAAAATATGTAGGAAGGAATGCGGGCGCAT
Reference ( gi|1 ) : ATGTTATGTTTGTTGCTTAA---GTT-CTT-TTGGTAGTT-T--CGATGTTGA--T-GTAAAATCT-GAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AG-AAA----CTG-ACTGTACAAGACA-AACATTTA---TAA--TCACAAAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCATT-AAAACAATA------GTTAACATGTTTGATT----CAGAGTCAAA-CAGTA-AT-AA-AACAGAC-ACTGTAAC-AAAAGC--TGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACATTA--CAGGCAGGCAG-T-GAT--TA-AT-----AATAAATGAATA--------ATCT-TGAAATACGAGTG--GTGG-GGAATTTTG-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TATTC--GA-C-AA-ATG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTACTAAAG---AAA--------GGGGGGGGG--GTA--AGCAA--GAGACCTAACACTAGC-AGA-TATAATAAAACT-AATG-AA-CAAAAAGAGCAACTACTAATTCTA-GTTAAAGTGCACAAATACTAA--AGTG--ATAT-AATAG-TTACATA----T-TG-TCAAGCTGAGGAC-AAAACGTGAACACATAGA-CAAAAAT-G--CAATACAGAA---A-------AT-GGC-ATC--CACATTTAC---AAAA-TCGCA-TAT-CGAACGTAAAATAATATATTTGTGTAACTTAACAGAC-------------TTTGCACGCGAT-TTGGTTATGACAATGAAAACC-ATT-AACATGGAATAGC-GTTATCTAGAAATTGTAATTTATCTAGAAATTGTAATTTTGCCCGCTTTACA--AAGAAACTATAA----AAATTT---TATACAAAAGT-AA-ATGATTTGAACGAATATC-TAAAATTCTCAAAGTTTAGAAATAA-TACGTTCCTATGC-AATAAA---T--TGTAAAACAG--AAAAACATGAATA--------TAAA--GAGC-TACAGTGGAAAATT--G-ATACTAAAA--------AGTAAA----------------T--AAAAGT----------T--CTTTAACCTGAAA--TCAGGACAG--GA-ACGGAATTGTAAATTC-GTGACT-TTAT-TACTTGACG--TC--CA-GGAG-AAAACTGACCCGGACAATTCA--AGC-TAGC-GTCTCCTG-TTTA-GCCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCGAAAA-GAAGC-------T-ATTAT--TGTAATTGAAATTAAAACAACTCAATTTACTGTGGGAA--ATTAC-T-TAC--ACGCGG-ACAGA-CA-GG-TAAATGAC-ATA-T-G-G-GAAA---TTAAGTTATCT-TAACAAA-TTA-TACTAAAGATGTCGGCTTT-ATTGA-TT-GAAG-G--ACACTA---AT--TGA--TTTTCTCAGATT-TTCAGAGACAAAA---CGCCAAAA---A--------GGGGGGGA---CAGAC---C--TCGCGACA-AAG-TA----------TAT-T--AACACA--------------------TA---TGCC-----CATG---ACAAAGA-ATAAAAAT---ATAAAATATGTAGGAAGGAATGC-GGCACATT
gi|19 : ATGTT---TTTGTTG--TCA---GTT-CTT-TTTGTAGTT-G--TGATGTTGA--T-GT-GAATCT-GAAA-TCAGGACAGGAGACAAACTGGCGAAT
gi|12 : gtgTGTTAT-TTAATTGC--GA---GTT-CTTGTTTGTAGTT-TGTTGGTGTTGA--TTGTGGA-TCT-GAAAATCAGGACAGGAGACGGAATTGTAATTT--CAGT--GACTTT-ATTGTTTGACGTCCACAGG-AG-AA----------------AAGACATAACATTTATTTTAA--TCACAGAAATAAT-ACCACCAATGCCTCTGTAAAGGTTTG-AG-CA-TGCAGGTGAGCACAAATA-T-AATTAGCATG-TG----CAT-GACACCAT
gi|4 : ATGTTTGTTGCTTAATTAGTTTCTT-TTGGTAGTTGT--C-ATGTTGA--T-GTAAAATCT-GAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TTTATTACTTGACGTC--CAGG-AG-AAAA---CTG-ACCGTACAACACA-AGCATTTA---TAAGATCACAGAAATAATA-CCAAC---GTCTCTGTAAAGGTTTG-AAACAT-GC-GGTG-GCACA---AAT-AATTA-CATG-TGACTGCGTGGACACCATA-AAAACAATA------GTTA-CATGTTTGATTA---CAGATTCAAA-CAGTA-TT-AA-AACAGAC-ACTGTAAC-AAAAGCA-TGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACGTTA--CAGGCAGGCAG-T-GATTATA-AT-----ATTAAATGAATA--------ATCT-TG--ATACGAGTG--GTGT-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAAGATTGC-TATTCG-GA-CAAA-AGG-----------------TCAGA-CTCATTA-AAAC-A-ATAAGA---AGGGCTTGAACCGTTTACTAAAA---AAAAAAAAAAGGGGGGGGGG--GTA--AGCAA--GATACT--ACACTAGC-AGA-TCTAATAAAACT-AATGAAA-CAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACT-A--AGTGATATAT-AACAG-TTACATATTCGT-TG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG--CAATACAGAA---A-------AT-GACTATCTATACATTTACA--AAAA-TCGCA-TAT-CGAACGTAAAATAATATATT--TGTAACTTAACAGACTTTGCTTTTTCATTTTGCACGGGAT-TTAGTTACGACATTGAAAACCGATT-AACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGTTTTACA--AAGAAAGTATAA-------------TATAC-AAAGTAAA-ATGATTTGTAAGAATATC-TAAAATTCT-AAAGTTAAGAAATAA-TATG------------TAAA---T--CGCATAACAG--AAAAACATGAATA--------TAAA--GAGCGTACAGTGAAAATTT--G-ATACTAAAA--------AGTAAATAAGTAAAAATACG--T--AAAACT----------T--CTTT-ACCTGAAA--TCAGGACAG--AG-AGGGAATTGTAAATTC-GTGACT-TTTT-TACTTGACG--TC--CA-GGAG-AAAACTGA-CCGGACAATTCA--AGC-TAGC-ATCTCCTG-TTTT-GTCACTGAGTTAAT--CTTGTCAA-TGTAA---TGTGCGAAAA-GAAGC-------T-GTTATAAGGTAATTGAAATTAAAACAACACAATTTACTGTG
gi|16 : AA---GAT-TTT-TTG----TT-G--TGATGTTGA--G-GTGGA-TCT-GAAA-TCAGGACAAGAGACGGAATTGTAAATT--C-GT--GAC-Tt
gi|3 : gtataaatgtggacatgtatcacaGAT-TTGAGGT-GTA---TCTTGAAA-TCAGGACAGGAGACGGAATTGTAAATTTCC-GTTGGAC-TT-ATTACTTGACGTC--CAGGGAG-AAAA---CTGGATCGTACAAGACA-AACATTTA---TAA--TCACAGA--TAATT-CCAACAATGTTTCTGTAAAAGTT-G-AA-CAT-GC-GGTG--CACA-----T-A--TA-CATG-TG----C-TGGACACCATTTAAAACA-TA------GTTA-CATGTTTGATTA---CAGATTCAAC-CAGTATATTAA-AAAAGACCACTGTAACCAAAAGCCATGTGTGCAAGGACACCTATTAAACAATGTTAAAGAT-ACTACATT---CAGGCAGGCAGCT-GAT--T--AT-----AATAAATGAATA--------ATCT-TG--ATACG-GTGTTGGGG-GGAA-TTTA-ACATAAGGGGGGGG-AAATTAACCAATTGATAG-AAATTCG--CTTT-GC--ATGAAGAG--GC-TATTTCGGA-C-AA-TGG-----------------ACAGACCTCATTT-ACACAATGTAAGAAGCAGGACTT---CCGGTTACTTAAG---AAA-----------AGGGGG--GTA--AGCAAT-GAGA-CTACAATTAGC-AGA-T-TAATAAAACTAAATG-AA-CAAAAG----AACTACTAATTC-A-GTTAAAGTGCACAAATACT-A--AGTA--ATAT-AATAGTTTAC-TA----T-TGTTCAAGATGA-GACAAAAATGTGAACAC-TAGA-GAAATGG-G--C-ATACAGAA---A-------ATGGGC-ATC--TACATTTACA--AAAA-TCGCA-TAT-CGAACGTAAAA-A----------------TAACAAAC--------------TGGCACGGGA--TTAGTTACGACAATGAAGCCG-ATT-AACAT-GAATAGCAGTTATCTAGAAA-------------------TGTTATTTTG-CCGCTTTACACGAAG----TATAA-------------TATA-----------------TGAACGAATATC-T-AAATTCTCA---TTTAGAAATAATTACGTTCCTATGCAAATAAA---T--TGTAAAACAG--AAAAACA-GAATA--------TAAA--GAGC-GACAGTGGAAAATT--GCCTACTAGAA--------AGTAAATAAGTAAAAATAACATT--AAAAGT----------T--ATTT--CCTGAAAATTCAGGACAGGAGA-ACGGAATTGTTAAATC-GTGACT-TTAT-TACTTGACGGATC--CAGGGAGAAAAACTGA-CCGGAC-ATTCAAGAGC-TAGCGGTCTCCTGTTTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCGAAAA-GAAGC-------T-ATTA---TGTAATTGAAATT-AAACAACTCAA-TTAC-GT-GGAA--ATTAC-T-TATTAACGCGG-AC-GA-CA-GGCTAAA-------A-T-G-G-GACA---TCActtatgtac
gi|2 : gtgatgttgaggtggagatgtagaatctggtggatgttgagagtgACCT-GAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GACTTT-ATTACTTGACGTC--CAGG-AGAAAA----CTG-ACCGGACAAcattgtataaaacgatt
gi|24 : attaaaaacagacactgtaacaaaagcatgtgtgcaaggacacctttaaacattacaggcaggcagtgataatcttgatacgagtggtggggaattttaacagaaatggggaaattaaccaattgatagaaaattcgctttgcaatgaaggaagtcagactcattttacacaataaggacttccggttactaaagaaaaaggggggggggtgttatcaagagactacactagcagatataataaaactaatgaaacaaaaagcaactactaattctagttaaagtgaacaaatactaagtgatataatagttacatatcgtcaagatgaggacatcgcgtgaacacatagacgaaaatgacaatacagaaaatggctacatttacaaaaatcgaatatcggacataaaataatgtatttgtaacttaacacactttgtttcttcattttgcacaggatttagttacgacaatgaaaaccgattattatggaatagcgttatctagaaattgtaattttgccgctttacaaagaaactataactataaacatagatctacaaagtaaaagaaaaacatgaataggcctatacagagagcgtagtggaaaattgatgctaaaaagtaaaataagtaaaaatacgttaaacttctttAT-TT-ATTGCTTGACGTC--CAGG-GG-AAAAGTGTTG-ACTGTTCAAGACA-ATCATttcaagcttagcgtctcctgtttaggtcattgagttaatcttgttgattgtaatgtgcgataagagtattttgtaattgaaattaaaacaacacaatgtactgtgtgaaacattactttataacgcggtattacaggtaaatgacatatggggaaaatttaagctttcttaacaaatttatataaaggatgtcggctttgacactaataatgagtttttttcagattattcagagacaaacatcataaagggaaaggggggggggcaggctactcaacaaagatatattaacacattagtctacctgggatatgtgtacaaaaaataatgatttaagaaagtatatatctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|14 : -TT-ATTACTTGACGTC--C--------------------------AGACA-AAC--------TAA--TGA----------AACCAACAATGTCTCTGTAAAGGTTTG-AATCA-TGC-GTTG-GCACA---A-TAAACTA-GATG-CG----CATGGACACCATT-AAAACAATA------ATTAaataaatacagg
gi|27 : tACCAGCAATGCCTCTGTAAAGGTTTGAAA-CAT
gi|21 : -AA-CAT-GC-GGTG-GCACA---A-T-AATTA-TATG-TG----CGTGGACACCATT-AATACAATA------GTT-ACATGTTTGATTA---CAGATTCAAgt
gi|9 : aTG-CATGGTG----CATGGACACCATT-AAAACAATACCGGTAGTTA-CATGTTTGAGTGTAACA-ATTCAAA-CAGTA-TT-AACAACAGAC-ACTGTAAC-AAAAAAA-TGTGCGTAAGGACACCT-TTA--------------TTACTACATTA--CAGACAGACAG-T-GAT--TC--T-----AATAAATGAATACCCCGGTAATCT-TGA----------------------TTTA-ACATAA--ATGGGG-AATTTAACCGAATGATAGAAAATTCG--CTTT-GCTAATGAAGGATTGT-TATTTG-GA-C-AA-ATG-------------------A----TTGTTT-ACAC-A-ATAAGA---GGGACTT---CTGGCTACTA
gi|10 : aaaacaatggtaatgttacatgtgcaCATTTTTGATTA---CAGATTCAAAGCAGTG-TT-AG---CAGGC-ACTGTATT-AAAAG-------TG--------------AGACAAT--TAG------CTATAT-AGTCAGGCAGACAA-TTGAT--TACATTGTTAAATAAATAAATA--------ATATCTGTATAATGAGTG--ATGGCGGAATTTTACACATAA--ATGGGGGAAAATAACCAATTGATAGAAAATTTGGACTTTGGCT-ATGAATGATTGTGTATTC--GAGC-AAGATGGAGTTGTTTGGAACAATTAAGATTTTATTG-A-AC-A-ATAAGA---GGGACTT---CTGGTTACTtaaacaaaaacgagg
gi|2 : ggtt-AA-AACAGAC-ACTGTAAC-AAAAGCA-TGTGTGCAAGGACACCT-TTAAACA------------------TTA--CAGGCAGGCAG-T-GAT-----------------------A--------ATCT-TGA--TACGAGTG--GTGG-GGAATTTTA-ACAGAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCA-ATGAAGGA--------------------A-G-----------------TCAGA-CTCATTTTACACAA--TAAG------GACTT---CCGGTTACTAAAG---AAAAA------GGGGGGGGG--GTGTTATCAA--GAGACT--ACACTAGC-AGA-TATAATAAAACT-AATG-AAACAAAAAG--CAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTG--ATAT-AATAG-TTACATA----T-CG-TCAAGATGAGGAC-ATCGCGTGAACACATAGA-CGAAAAT-GA-CAATACAGAA---A-------AT-GG----C--TACATTTACA--AAAA-TCGAA-TAT-CGGACATAAAATAATGTATT--TGTAACTTAACACACTTTGTTTCTTCATTTTGCACAGGAT-TTAGTTACGACAATGAAAACCGATT-ATTATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGCTTTACA--AAGAAACTATAACTATAAACATAGATCTAC-AAAGT-AA-AAGA
gi|23 : attaACTT---CCGGTTACCAAAGGCGAAA--------GGGGGAAGGATGTA--AGCAAATGAGA--TAACACTAGCGAAA-TTTAA-AAAaaaacatgaataggcctatacagagagcgtagtggaaaattgatgctaaaaagtaaaataagtaaaaatacgttaaacttctttacctgaaatcaggacaggagacggaattgtaaattcgtgactttattacttgacgtccaggagaaaactgaccggacaattcaagcttagcgtctcctgtttaggtcattgagttaatcttgttgattgtaatgtgcgataagagtattttgtaattgaaattaaaacaacacaatgtactgtgtgaaacattactttataacgcggtattacaggtaaatgacatatggggaaaatttaagctttcttaacaaatttatataaaggatgtcggctttgacactaataatgagtttttttcagattattcagagacaaacatcataaagggaaaggggggggggcaggctactcaacaaagatatattaacacattagtctacctgggatatgtgtacaaaaaataatgatttaagaaagtatatatctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|25 : AGAC--AACGCTTGC-AAAATCTACTAAAAGT-AATG-AAACGGAAAG--CAACTACAAATTCTA-Gg
gi|13 : ATTCTACGTTAAAGTATACACGTCCTAACTCGTG--AAGTCAATAG--TA-ATA-------G-TCAAGGT------------GTGAACAGAGAGACCAAAAAT-A---ACTGCAGAAAATA-------AT-GTT-ATC--TGCATTTACAAAAAAA-TCGCA-CAT-TG
gi|5 : TACATA----TGTG-TCAAGATGAG-AC-AAAGCATGAACACGTAGAACAAAAAT-GAACAATGCGGAA---ATAGCCTTAC-GGT-ATC--TACATTTAA---AAAA-TCGCACTATGTGGACGTAAAATAATGTATTTGTA-----TGACAGACTTTTGTTTTTCATTTTGCACGGGATATTG--TACGACAATG-AAACG-ATA-AACATGCAATAGC-ATTAT-TAGAAATTGT-----------AAATTG-----TTG--CG-TTTACA--AAGAAACTA-AA-------------CATAC-AAAGT-AATATAGTT-----GATTTTCGTAAG------AAAGAAAAGGAATAA-TA-------A----AATAAA---CAGTTTCAGACAATTAAGAACATGAATA--------AAAA--Gg
gi|22 : actaC--TACATTTAC---AAAAATCGCA-TAC-TGGACGTAAAATAATGAATT--TGTAACTtaaatgtttgaagaatattgaaatttctcaagtttacttatgcaataaatcgcaaaacagaaaaacatgaatataaaaagaggcgtagtgaaaaatttggatactaaaagtaaaataagtaaaatactaaaaactgtctttactgaattcaggacagaaaagactatacttgagttccaggaaaaaactgaccaagcgattcaagctagtgtttatgcattgagttaatttgtcaatgtaatggtgaaaaagaagcttattattataattaaattaaaacaacacaattactttggaaattacttattaacacggagatatggcaaatgacatactggagaagttaagtttcttaacaaattatactaagatgtcagcttcattgacctaagttgattttctcagattcagagacaaaatgccaaaaagggggaagagactaatgcaacacaagtacagttagttatattaacacatatgtccatggaaagaaataaaaataaaatgtgtaggaagattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|17 : ggctaaCACGGGAT-TTAGTTATGACAATGAAAACC-GGTGAACATGGAATAGC-ATTATCTTGAAATTGTAATT----------TTG---------CCGCTTTAC----AGAAATTATAA-------------CATAC-AAAGT-Acttttttttttttttt
gi|5 : ATA-AAAAGT-AA-ATG-TTTGAA-GAATATT-GAAATTTCTCAA-GTTTA--------------CTTATGC-AATAAA---T--CGCAAAACAG--AAAAACATGAATA--------TAAAAAGAGG-CGTAGTGAAAAATTTGG-ATACTAAAAGTAAAATAAGTAAAATAC------------T--AAAAAC----------TGTCTTTA--CTGAAT--TCAGGACAG--AA-A-----------A------GACT---AT--ACTTGAGT--TC--CA-GGAA-AAAACTGACCAAG-CGATTCA--AGC-TAG--------TG-TTTA-TGCATTGAGTTAAT---TTGTCAA-TGTAA---TG-GTGAAAAAGAAGC-------TTATTAT--TATAATT-AAATTAAAACAACACAATT-ACTTTGG-AA--ATTAC-T-TATTAACACGG-A--GA-TATGG-CAAATGAC-ATACT-G-GAGAAG---TTAAGTT-TCT-TAACAAA-TTA-TACTAA-GATGTCAGCTTC-ATTGA-CC-TAAG--------------T--TGA--TTTTCTCAGATT---CAGAGACAAAA---TGCCAAAA---A--------GGGGGA-A---GAGAC---TAAT-GCAACACAAG-TACAGTTAGTTATAT-T--AACACA--------------------TA---TGTC-----CATG---GAAAGAA-ATAAAA-----ATAAAATGTGTAGGAAG
gi|15 : actatacatatgtgtcaagatgagacaaagcatgaacacgtagaacaaaaatgaacaatgcggaaatagccttacggtatctacatttaaaaaatcgcactatgtggacgtaaaataatgtatttgtatgacagacttttgtttttcattttgcacgggatattgtacgacaatgaaacgataaacatgcaatagcattattagaaattgtaaattgttgcgtttacaaagaaactaaacatacaaagtaatatagttgattttcgtaagaaagaaaaggaataataaaataaacagtttcagacaattaagaacatga-AATAAAAAGT--CGAAAAATAG--AAAAA------TA--------TAAA--GAGCGTGC--TGAAAAATT--G-ATACT-AAA--------AGTATA----------------TTAAAAAGTACATG-----T--TTTTTACCTTAAG--TTAGGACAG--Gattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|2 : gaGTAAAA--G--AAAAACATGAATAGGCCTATACAGA--GAGC--GTAGTGGAAAATT--G-ATGCTAAAA--------AGTAAAATAAG-----------T--AAAAATACGTTAAACTT--CTTTA-CCTGAAA--TCAGGACAG--GAGACGGAATTGTAAATTC-GTGACT-TTAT-TACTTGACG--TC--CA-GGAG-AAAACTGA-CCGGACAATTCA--AGCTTAGC-GTCTCCTG-TTTAGGTCATTGAGTTAAT--CTTGTTGATTGTAA---TGTGCGATAA-GAG---------T-ATT-T--TGTAATTGAAATTAAAACAACACAATGTACTGTGTGAAACATTACTT-TATA-ACGCGGTAT-TA-CA-GG-TAAATGAC-ATA-T-G-G-GGAAAATTTAAGCTTTCT-TAACAAATTTA-TATAAAGGATGTCGGCTTT---------------G--ACACTA---ATAATGAGTTTTTTTCAGATTATTCAGAGAC-AAA---CATCATAA---AGGGAAAGGGGGGGGGG---CAGGC---T--ACTCAACA-AAGATA----------TAT-T--AACACAT-------------------TAGTCTACCTGGGATATGTGTACAAAAA-ATAATGATTTAAGAAAGTATATA
gi|19 : attaaaaacagacactgtaacaaaagcatgtgtgcaaggacacctttaaacattacaggcaggcagtgataatcttgatacgagtggtggggaattttaacagaaatggggaaattaaccaattgatagaaaattcgctttgcaatgaaggaagtcagactcattttacacaataaggacttccggttactaaagaaaaaggggggggggtgttatcaagagactacactagcagatataataaaactaatgaaacaaaaagcaactactaattctagttaaagtgaacaaatactaagtgatataatagttacatatcgtcaagatgaggacatcgcgtgaacacatagacgaaaatgacaatacagaaaatggctacatttacaaaaatcgaatatcggacataaaataatgtatttgtaacttaacacactttgtttcttcattttgcacaggatttagttacgacaatgaaaaccgattattatggaatagcgttatctagaaattgtaattttgccgctttacaaagaaactataactataaacatagatctacaaaAATCTGAAA--TCAGGACAG--GA-tctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|12 : gtgatgtttttgttgtcagttctttttgtagttgtgatgttgatgtgATCTGAAAA-TCAGGACAG--GAGACGGAATTGTAATTTCAGTGACT-TTAT-TGTTTGACG--TCCACA-GGAG-AAAAgacaaactggcgaat
gi|16 : tgttatttaattgcgagttcttgtttgtagtttgttggtgttgattgtggATCTGAAA--TCAGGACAA--GAGACGGAATTGTAAATTC-GTGACTCTTATGTACgacataacatttattttaatcacagaaataataccaccaatgcctctgtaaaggtttgagcatgcaggtgagcacaaatataattagcatgtgcatgacaccat
gi|14 : gtataaatgtggacatgtatcacaaagattttttgttgtgatgttgaggtggT-TTAT-TACTTGACG--TC--CA-G
gi|24 : T-TTAT-TGCTTGACG--TC--CA-GGGG-AAAAGTG---TTGACTGTTCA--AGacaaactaatgaaaccaacaatgtctctgtaaaggtttgaatcatgcgttggcacaataaactagatgcgcatggacaccattaaaacaataatta
gi|6 : aG-AAAACTGGCC-GGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GGAAATGA-TTAATTTCTTGTCGA-TGTAAAATTCTGCGAAAA-GAAGC-------T-ATTAT--TGTAATTGACATTAAAACAACACAATTTACTTTTGAAA--ATTAC-T-TATA-ACGCGG-AGAAA-AA-GG-CAAATGAC-AGA-A-GAG-GAAA---TTAAGTTTTCT-TAGCAGA-TTA-CACTACAGATGTCGGCTTC-AGTGATTT-GAAG-G--ACACTA---AT--TGA--TTTTCTCAGA-T-TTCAGAGACAAAA---TGCCAAAA---AGGAAGGG-GGGGGGGAGGTCAGAC---T--ACTCGACC-AAG-TA--------------T--AACATG--------------------TA---TG----------------AA---------------ATAAAATATGCTCGAAGGAATGacaatcataataaatacagg
gi|8 : GTTAAT--CTTATCGA-TGTAA---TGTGCGAAAA-GAAGC-------T-ATTAC--TGTAATTGAAATTAAAACAACACAATTTATTttaaacgtcctttaagtgaactggtttttgttctcaaaaattccaaatgttgttacagtttctatttatcatctaaaaacttacgaaattgtgtgggaacatggacagaatatagaaaatatcggaaagttctaaaattaaagaaattgtcaaatggtgattgaatgtgcctata
gi|7 : GTCGA-TGTAA---TGTGCGAAAA-GAAGCTATTAAGT-ATTAT--TGTAATTGAAATTAAAACAACAC-ATTTACT-TGGGAA--ATTAC-TATA---ACGCGG-ACAGACCA-GG-TAAATGGCAATA-TGG-G-GAAA---TTAAGTTATCTATAAC-AA-TTATTATTAAAGATGTC-GCTTTAATTGATTT-GAAG-GACACACTA---AT--TGA--TTTTCTCAGA-T-TTCAGAGAAAAAAAACCGCCAAAA---A--------AGCGGGGA---CAGAC---T--ACTCGACA-AAG-TA----------TATATTAAACACA--------------------TA---TGTC-----CATG---ACAAAG--------AT---ATGAA------AGGA---AATGC-GACGCATnnnnagaggtcggcttcattgatttgaaggacagtgattttctcttatttcatagacaaaacgtcaaaagggagggggggactacttgacaaagtatattaacacatacatactaacacatacatgtatgtccatggcaaagaaataaaatataaaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
gi|20 : AG-GAAGN---------ATTTT--TGTAATTGACATTAAAACAGC-------AC-------A--ATTAC-T-TATA-ACGCGG-AGGGA-AA-GG-TAAATGAT-ATA-A-G-A-GGAA---cgtttaagtaaactagtctttgttctcaaaattccaaatgttgttacagtttctaatcatctaaaactcttcgaaattgcgtgggaacatgaaacaaaatatagaatatgtccaaagtttactaaaattaaagaaattgtaaaatggtgaaatgtgcctatatg
gi|8 : g-GAAA---TTAAAACAAC----ACAAT-TTA-TTNNNNAGAGGTCGGCTTC-ATTGA-TTTGAAG-G--ACAGTG---AT--T----TTCTCTTA---T-TTCATAGACAAAA---CGTCAAAAGGGA--------GGGGGGGA---C-TAC---T--T---GACA-AAG-TA----------TAT-T--AACACATACATACTAACACATACATGTA---TGTC-----CATG---GCAAAGA-AATAAAAT---ATAAAACAT
gi|18 : gttaatcttatcgatgtaatgtgcgaaaagaagctattactgtaattTTT-TTACAAA-TTA-CTCTAAAACCGTCTGCTTC-ATTGA-TT-TATGTT--ACGCTAACTAT--TGG--TTTTCTCA---T-TTCAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
gi|28 : tt-TT-GAAA-G--ACACTA---AT--TGA--TTTTCTCAGACT-Tgaggggggggggggg
gi|11 : at--TGA--TTTT-TCGGAAT-----AAGAAAAAC---CGTGAAAA---A--------AAGTGC-A---CAGAATAAC--TCG--ACA-A-G-TA----------TAT-C--GGCAAG--------------------TG---TGCC------ACG---ACAAAGAGATA--------ATAAAATA---------GAATGCGGGCAC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): GGGATTGTTTTTGTTGCCAAAGTTCTTTTGGTAGTTGTCATG
Alignments
lowQualScore : 111 222222 111 1 11 11 333333333333333 111 22 1 22 11111 1111 111111 111 11 111 33333333333 333333333333 22222222 222 11 555555555555555555 1 1 1111 111 111111 11 11 11 222 1 11 11111 11 222222 1 11 22222222222 222222222222 888888888888888888 2222222 11 11111111 1111 11111111111 333333333333 111 111 1111 7777777777777777777777777777777 22 11 11 1111111111 1 11 1111 1111 111 444444444 1111 3333333333 44444444444444444444 3333333333333333333333333333333 2
lowQualScore : 222 777777 6 6 7 000 6 3 1 6 11 8 11 5 6 99 6 111111111111111 6 3 111 99 1 0 0 22 5 1 00 6 6 77777 6 5 5 2222 4 5 666666 5 111 8 11 7777 6 6 222 1 6 1 11111111111 99 7 6 6 777777777777 44444444 6 555 6 3 99 6 3 6 99 6 99 6 00 99999 6 2 6 777 000000000000000000 3 6 2 5 88 3333 000 77 88 999999 11 11 99 888 6 6 6 9 8 0 11 6 1 88888 11 8 88 000000 6 3 55 6 1 3 00 3 44444444444 6 6 77 77 5 5 99 3 1 000000000000 1 6 333333333333333333 6 1 77 44 4444444 33 00000000 4444 00000000000 3 333 1 6 6 6 111111111111 000 8888 77 0 1 77 999 3 0000 7 4444444444444444444444444444444 6 66 99 11 5 1 1 0 0 11 8 6 6 6 99 6 6 6 6 1 77 5 888 5 4 8888888888 1 8 5 77 5 1 99 5 5 5 5 5 5 5 5 888 5 5 0 77 5 1111 0 5 66 888 5 66 66 1 1111 000 111111111 0000 66 5 5 0000000000 5 77 66666666666666666666 7 77 6666666666666666666666666666666 0 333 5 3 0
lowQualScore : ... ...... . . . ... . . . . .. . .. . . .. . ............... . . ... .. . . . .. . . .. . . ..... . . . .... . . ...... . ... . .. .... . . ... . . . ........... .. . . . ............ ........ . ... . . .. . . . .. . .. . .. ..... . . . ... .................. . . . . .. .... ... .. .. ...... .. .. .. ... . . . . . . .. . . ..... .. . .. ...... . . .. . . . .. . ........... . . .. .. . . .. . . ............ . . .................. . . .. .. ....... .. ........ .... ........... . ... . . . . ............ ... .... .. . . .. ... . .... . ............................... . .. .. .. . . . . . .. . . . . .. . . . . . .. . ... . . .......... . . . .. . . .. . . . . . . . . ... . . . .. . .... . . .. ... . .. .. . .... ... ......... .... .. . . .......... . .. .................... . .. ............................... . ... . . .
lowQualScore : 333 111111 7 7 5 222 7 7 7 7 00 0 00 7 7 22 7 333333333333333 7 2 777 22 0 8 8 11 7 4 55 7 7 55555 7 7 7 1111 0 7 444444 7 777 0 00 5555 7 7 333 0 7 7 22222222222 22 3 7 7 000000000000 22222222 7 777 7 2 22 7 2 7 22 7 22 7 22 33333 7 5 7 000 222222222222222222 3 7 5 5 33 8888 000 99 33 222222 00 00 00 222 7 7 7 3 0 6 00 7 0 22222 00 0 88 000000 7 2 00 7 7 3 88 2 33333333333 7 7 99 99 7 7 22 2 0 888888888888 7 7 222222222222222222 7 0 99 44 4444444 66 55555555 0000 88888888888 2 888 0 7 7 7 777777777777 000 3333 99 7 4 99 333 2 0000 3 3333333333333333333333333333333 7 88 22 22 0 0 0 8 8 00 0 7 7 3 22 7 7 7 7 5 99 0 888 0 4 7777777777 9 8 6 99 7 4 00 7 7 7 7 7 7 0 0 888 9 7 1 44 7 0000 2 0 99 888 0 11 11 0 6666 000 000000000 7777 77 7 7 7777777777 7 99 44444444444444444444 1 99 6666666666666666666666666666666 1 999 6 3 7
consensus : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTTG--TGATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GAT--TA-AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGAC-AA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGACT-AAC-ACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTG--ATAT-AATAG-TTACATA----T-TG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATC--TACATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT------------------TTG-CCGCTTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAA--GAGCGTACAGTGAAAAATT--G-ATACTAAAAAGTAAAT-A-GTAAAAATAC---TAAAAG-AC---T-TCTTTAACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-A-GG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGC-GGCGCAT
Reference ( family-401 ) : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTNGTAGTTN--TGATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GAT--TA-AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGC-TA-TTCGGAC-AA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---GGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGACTTAAC-ACTAGC-AGA-TCTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTG--ATAT-AATAG-TTACATA----T-TG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATC--TACATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGNTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG-----TTG-CCGCTTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAA--GAGCGCGCAGTGAAAAATT--G-ATACTAAAAAGTAAANNA-GTAAAAATA----TAAAAGTAC---T-TCTTTAACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGACGGAC-A-GG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTN-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGGCGCAT
gi|1 : ATGTTATGTTTGTTGCTT----AA-GTTCTT-TTGGTAGTTT--CGATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAA----CTG-ACTGTACAAGACA-AACATTTA---TAA--TCACAAAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTTAACATGTTTGATT----CAGAGTCAAA-CAG--TAATAA-AA-CAGA-CACTGTAA-CAAAAG-C-TGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GAT--TA-AT-----AATAAATGAATA--------ATCT-TGAAATA-CGAGTG--GTGG-GGAATTTTG-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTC-GAC-AA-ATG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAG---AAA------GGGGGGGGG--GTA--AGCAA--GAGACCTAAC-ACTAGC-AGA-TATAATAAAACT-AATG-AACAAAAAGAGCAACTACTAATTCTA-GTTAAAGTGCACAAATACTAA--AGTG--ATAT-AATAG-TTACATA----T-TG-TCAAGCTGAGGAC-AAAACGTGAACACATAGA-CAAAAATG--CAATACAGAA---A-------AT-GGC-ATC--CACATTTAC---AAAATCGCA-TAT-CGAACGTAAAATAATATATTTGTGTAACTTAACAGAC-------------TTTGCACGCGATTTGGTTATGACAATGAAAACC-ATTAACATGGAATAGC-GTTATCTAGAAATTGTAATTTATCTAGAAATTGTAATTTTGCCCGCTTTACA--AAGAAACTATAAAAATTTTATACAAAAGT-AA-ATGATTTG-AACGAATATC-TAAAATTCTCAAAGTTTAGAA-AT-AA-TACGTTCCTATGC-AATAAA---TTG--TAAAACAG--AAAAACATGAATATAAA--GAGC-TACAGTGGAAAATT--G-ATACTAAAAAGTAA-------------A----TAAAAG------T-TCTTTAACCTGAAA--TCAGGACAGGA--ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGACCCGGACAATTCA--AGC-TAGC-GTCTCCTG-TTTA-GCCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACTCAATTTACTGTGGGAA--ATTAC-TTA-C-ACGCGGACAGAC-A-GG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTATCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTTATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGATT--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACCT-CG-CGACA-AAG----------TATAT-T--AACAC--------------------ATATGCCCA--TG----------ACAAAG-A-ATAAA-AAT---ATAAAATATGTAGGAAGGAATGC-GGCACAT
gi|10 : ------GTT--CATTTTTGATT---ACAGATTCAAAGCAG--TGTTAG----CAGG-CACTGTAT-TAAAAG-------TG--------------AGACAAT--TAG------CTATATAGT-CAGGCAGACAA-TTGAT--TACATTGTTAAATAAATAAATA--------ATATCTG-TATAATGAGTG--ATGGCGGAATTTTACACATAA--ATGGGGGAAAATAACCAATTGATAGAAAATTTGGACTTTGGCT-ATGAATGATTGTGTA-TTCGAGC-AAGATGGAGTTGTTTGGAACAATTAAGATTTTATTG-A-AC-A-ATAAGA---GGGACTT---CTGGTTAC--Tt
gi|11 : g--TGA--TTTT-TCGGA-A--T---AAGAAAAAC---CGTGAAAAA--------AAGTGC-A---CAGAATAACT-CGACA-A-G----------TATAT-C--GGCAA--------------------GTGTG-CCA--CG----------ACAAAG-AGAT-AA--------TAAAATA---------GAATGCGGGCAC
gi|12 : tcTGTTAT-TTAATTGC------GA-GTTCTTGTTTGTAGTTTGTTGGTGTTGATTGTGGA-TCTGAAAATCAGGACAGGAGACGGAATTGTAATTT--CAGT--GACTTT-ATTGTTTGACGTCCACAGG-AGAA----------------AAGACATAACATTTATTTTAA--TCACAGAAATAAT-ACCACCAATGCCTCTGTAAAGGTTTG-AG-CA-TGCAGGTGAGCACAAATA-T-AATTAGCATG-TG----CAT-GACACCA-Tcagttttggcaattaaatgtccttgattacattaattcggaaaaattttgttgtttttttttaaacttaaaaattgtacatggacgtgaataaatataaaatgtaccgaaagttattagaattataagattgc
gi|13 : ATTCTACGTTAAAGTATACACGTCCTAACTCGTG--AAGTCAATAG--TA-ATA-------G-TCAAG------------GTGTGAACAGAGAGACCAAAAATAA-C--TGCAGAAAATA-------AT-GTT-ATC--TGCATTTACAAAAAAATCGCA-CAT-TGG
gi|14 : -TT-ATTACTTGACGTC--CA-------------------------GACA-AAC--------TAA--T----GAAA------CCAACAATGTCTCTGTAAAGGTTTG-AATCA-TGC-GTTG-GCACA---A-TAAACTA-GATG-CG----CATGGACACCA-TTAAAACAATA------ATT-A
gi|15 : t-AATAAAAAGTCG--AAAAATAG--AAAAA------TATAAA--GAGCGTGC--TGAAAAATT--G-ATACTAAAA-GTATATTA---------------AAAAGTACATGT-TTTTTA-CCTTAAG--TTAGGACAGG
gi|16 : ga-----AA-GATTTT-TT----GTTG--TGATGTTGAG-GTGGA-TCTGAAA-TCAGGACAAGAGACGGAATTGTAAATT--C-GT--GAC-T
gi|17 : gtataaatgtggacatgtatcacaCACGGGATTTAGTTATGACAATGAAAACCGGTGAACATGGAATAGC-ATTATCTTGAAATTGTAATT------------------TTG-CCGCTTTAC----AGAAATTATAA------CATAC-AAAGT-Acttatgtac
gi|18 : TTTTTT-TA-CAAA-TTAC-TCTAAAACCGTCTGCTTCATTGA-TT-TATGTTACGC--TAACTA-T--TGG--TTTTCTC--A-T--TTCAAAG
gi|19 : ATGTT---TTTGTTG-T-----CA-GTTCTT-TTTGTAGTTG--TGATGTTGAT-GT-GAATCTGAAA-TCAGGACAGGAGACAAACTGGCGAATgaggggggggggggg
gi|2 : gtgATTAA-AAACAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACA------------------T--TACAGGCAGGCAG-T-GAT-----------------------A--------ATCT-TG-A-TA-CGAGTG--GTGG-GGAATTTTA-ACAGAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCA-ATGAAGGA--------------------AG-----------------TCAGA-CTCATTTTACACAA--TAAG------GACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTGTTATCAA--GAGACT--AC-ACTAGC-AGA-TATAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTG--ATAT-AATAG-TTACATA----T-CG-TCAAGATGAGGAC-ATCGCGTGAACACATAGA-CGAAAATGA-CAATACAGAA---A-------AT-GGC------TACATTTAC--AAAAATCGAA-TAT-CGGACATAAAATAATGTATT--TGTAACTTAACACACTTTGTTTCTTCATTTTGCACAGGATTTAGTTACGACAATGAAAACCGATTATTATGGAATAGC-GTTATCTAGAAATTGTAATT------------------TTG-CCGCTTTACA--AAGAAACTATAAC-----TATA--AACAT-A----GATCTA-CA-AAGTA-------------AAAG--AAAAACATGAA-TAGG--CCTATAC-AG-AGA---GCG--T--AGTGG--AAA---ATTGAT---------GC------TAAAAAGT------------AAAATA----A-GTAAAAATACGT-TAA----AC---T-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGCTTAGC-GTCTCCTG-TTTAGGTCATTGAGTTAAT--CTTGTTGATTGTAA---TGTGCG-ATAAGAG---TATT--------T--TGTAATTGAAATTAAAACAACACAATGTACTGTGTGAAACATTACTTTA-TAACGCGGTATTAC-A-GG-TAAATGACA-TA-TG-G-G-GAAAATTTAAGCTTTCT-TAACAAATTTAT-ATAAAGGATGTCGGCTTT--------------GACAC--TA---A-TAATGAGTTTTTTTCAGA-TTATTCAGAGAC-AAA---CATCATAAAGGGAAAGGGGGGGGGG---CAGGCTA-CT-CAACA-AAGA---------TATAT-T--AACAC--------------------ATTAGTCTACCTGGGATATGTGTACAAAA-A-AT-AATGATTTAAGAAAGTATATA
gi|20 : AGGAAGN--ATTT-------T--TGTAATTGACATTAAAACAGCACAATT----------------AC-TTA-TAACGCGGAGGGAA-A-GG-TAAATGATA-TA-AG-A-G-GAA---tctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|21 : g-AA-CAT-GC-GGTG-GCACA---A-T-AATTA-TATG-TG----CGTGGACACCA-TTAATACAATA------GTT-ACATGTTTGATT---ACAGATTCAA
gi|22 : aC--TACATTTAC--AAAAATCGCA-TAC-TGGACGTAAAATAATGAATT--TGTAACT-------CTTTTTTTTTT--TTTT
gi|23 : ggctaaACTT---CCGGTTAC--CAAAGGCGAAA------GGGGGAAGGATGTA--AGCAAATGAGA--TAAC-ACTAGCGAAA-TTTAA-AAAt
gi|24 : AT-TT-ATTGCTTGACGTC--CAGG-GGAAAAGTGTTG-ACTGTTCAAGACA-ATCA-TAA---TAA--ATACAGg
gi|25 : AGAC--AAC-GCTTGC-AAAATCTACTAAAAGT-AATGAAACGGAA--AGCAACTACAAATTCTA-Gg
gi|26 : T-TTTGTTGCC-----AAAGTTCTT-TTGGTAGTTG--TCATG
gi|27 : gggattgtACCAGCAATGCCTCTGTAAAGGTTTGAAA-CAT
gi|28 : -TT-GAAA-GACAC--TA---A-T--TGA--TTTTCTCAGA-C--TTgt
gi|3 : atGAT-TTGAG-GTGTATCTTGAAA-TCAGGACAGGAGACGGAATTGTAAATTTCC-GTTGGAC-TT-ATTACTTGACGTC--CAGGGAGAAAA---CTGGATCGTACAAGACA-AACATTTA---TAA--TCACAGA--TAATT-CCAACAATGTTTCTGTAAAAGTT-G-AA-CAT-GC-GGTG--CACA-----T-A--TA-CATG-TG----C-TGGACACCATTTAAAAC-ATA------GTT-ACATGTTTGATT---ACAGATTCAAC-CAGTATATTAA-AA-AAGACCACTGTAACCAAAAGCCATGTGTGCAAGGACACCTATTAAACAATGTTAAAGA-TACTACAT--T-CAGGCAGGCAGCT-GAT--T--AT-----AATAAATGAATA--------ATCT-TG--ATA-CG-GTGTTGGGG-GGAA-TTTA-ACATAAGGGGGGGG-AAATTAACCAATTGATAG-AAATTCG--CTTT-GC--ATGAAGAG--GC-TATTTCGGAC-AA-TGG-----------------ACAGACCTCATTT-ACACAATGTAAGAAGCAGGACTT---CCGGTTAC--TTAAGA-AAA-----------GGGGG--GTA--AGCAAT-GAGACT--ACAATTAGC-AGA-T-TAATAAAACTAAATG-AACAAAA--G--AACTACTAATTC-A-GTTAAAGTGCACAAATACT-A--AGTA--ATAT-AATAGTTTAC-TA----T-TGTTCAAGATGA-GACAAAAATGTGAACAC-TAG---AGAAATGG-GCATACAGAA---A-------ATGGGC-ATC--TACATTTAC--AAAAATCGCA-TAT-CGAACGTAAAA-A----------------TAACAAAC--TG------------GCACGGGA-TTAGTTACGACAATG-AAGCCGATTAACAT-GAATAGCAGTTATCTAGAAA-TGTTATT------------------TTG-CCGCTTTACACGAAG----TATAA------TATA-----------------TG-AACGAATATC-T-AAATTCTCA---TTTAGAA-AT-AATTACGTTCCTATGCAAATAAA---TTG--TAAAACAG--AAAAACA-GAATATAAA--GAGCG-ACAGTGGAAAATT--GCCTACTAGAAAGTAAATAA-GTAAAAATAACATTAAAAG------T-TATTT--CCTGAAAATTCAGGACAGGAGAACGGAATTGTTAAATCGTGACTTTATTACTTGACGGATCCAGGGAGAAAAACTGA-CCGGAC-ATTCAAGAGC-TAGCGGTCTCCTGTTTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA----------TGTAATTGAAATT-AAACAACTCAA-TTAC-GT-GGAA--ATTAC-TTATTAACGCGGAC-GAC-A-GGCTAAA-------A-TG-G-G-ACA---TCACATTGT
gi|4 : gtgatgttgaggtggagatgtagaatctggtggatgttgagagtg-TTTGTTGCTTAATTAG-TTTCTT-TTGGTAGTTG--TCATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TTTATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAACACA-AGCATTTA---TAAGATCACAGAAATAATA-CCAAC---GTCTCTGTAAAGGTTTG-AAACAT-GC-GGTG-GCACA---AAT-AATTA-CATG-TGACTGCGTGGACACCA-TAAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACGT--TACAGGCAGGCAG-T-GATTATA-AT-----ATTAAATGAATA--------ATCT-TG--ATA-CGAGTG--GTGT-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAAGATTGC-TA-TTCGGACAAA-AGG-----------------TCAGA-CTCATTA-AAAC-A-ATAAGA---AGGGCTTGAACCGTTTAC--TAAAAA-AAAAAAAAAGGGGGGGGGG--GTA--AGCAA--GATACT--AC-ACTAGC-AGA-TCTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACT-A--AGTGATATAT-AACAG-TTACATATTCGT-TG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GACTATCTATACATTTAC--AAAAATCGCA-TAT-CGAACGTAAAATAATATATT--TGTAACTTAACAGACTTTGCTTTTTCATTTTGCACGGGATTTAGTTACGACATTGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT------------------TTG-CCGTTTTACA--AAGAAAGTATAA------TATAC-AAAGTAAA-ATGATTTGTAA-GAATATC-TAAAATTCT-AAAGTTAAGAA-AT-AA-TATG------------TAAA---TCG--CATAACAG--AAAAACATGAATATAAA--GAGCGTACAGTGAAAATTT--G-ATACTAAAAAGTAAATAA-GTAAAAATACG--TAAA---AC---T-TCTTT-ACCTGAAA--TCAGGACA-GAG-AGGGAATTGTAAATTCGTGACTTTTTTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGC-TAGC-ATCTCCTG-TTTT-GTCACTGAGTTAAT--CTTGTCAA-TGTAA---TGTGCG-AAAAGAAGC-TGTTA-------TAAGGTAATTGAAATTAAAACAACACAATTTACTGTGataaaacgatt
gi|5 : atgTACATA----TGTG-TCAAGATGAG-AC-AAAGCATGAACACGTAGAACAAAAATGAACAATGCGGAA---ATAGCCTTAC-GGT-ATC--TACATTTA---AAAAATCGCACTATGTGGACGTAAAATAATGTATT--TGTA---TGACAGACTTTTGTTTTTCATTTTGCACGGGATATTG-TACGACAATGAAA--CGATAAACATGCAATAGC-ATTAT-TAGAAATTGTAA-A----------TTG-----TTG--CG-TTTACA--AAGAAACTA-AA------CATAC-AAAGT-AATATAGTT------GATTTTCGTAAG------AAAGAAAAGGA-AT-AA-TA-------A----AATAAA---CAGTTTCAGACAATTAAGAACATGAATAAAAA--Gt
gi|5 : acta--AAGAA--CATGA-------ATAA-AAAGT-AA-ATG-TTTG-AA-GAATATT-GAAATTTCTCAA-GTTTA----------------CTTATGC-AATAAA---TCG--CAAAACAG--AAAAACATGAATATAAAAAGAG-GCGTAGTGAAAAATTTGG-ATACTAAAA-GTAAAATAAGTAAAA-TAC---TAAAA--AC---TGTCTTTA--CTGAAT--TCAGGACAGAAA-A-----------------GACT--AT-ACTTGAGT--TCCA-GGAA-AAAACTGA-CCAAGCGATTCA--AGC-TAG--------TG-TTTA-TGCATTGAGTTAAT---TTGTCAA-TGTAA---TG-GTGAAAAAGAAGCTTATTA-------T--TATAATT-AAATTAAAACAACACAA-TTACT-TTGGAA--ATTAC-TTATTAACACGGA--GAT-ATGG-CAAATGACA-TACTG-GAG-AAG---TTAAGTT-TCT-TAACAAA-TTAT-ACT-AAGATGTCAGCTTCATTGA-C-----------C--TA---AGT--TGA--TTTTCTCAGA----TTCAGAGACAAAA---TGCCAAAAA---------GGGGGAA---GAGACTA-ATGCAACACAAGTACAGTTAGTTATAT-T--AACAC--------------------ATATGTCCA--TG----------GAAAGA-A-AT-AA-AA----ATAAAATGTGTAGGAAGtaaatgtttgaagaatattgaaatttctcaagtttacttatgcaataaatcgcaaaacagaaaaacatgaatataaaaagaggcgtagtgaaaaatttggatactaaaagtaaaataagtaaaatactaaaaactgtctttactgaattcaggacagaaaagactatacttgagttccaggaaaaaactgaccaagcgattcaagctagtgtttatgcattgagttaatttgtcaatgtaatggtgaaaaagaagcttattattataattaaattaaaacaacacaattactttggaaattacttattaacacggagatatggcaaatgacatactggagaagttaagtttcttaacaaattatactaagatgtcagcttcattgacctaagttgattttctcagattcagagacaaaatgccaaaaagggggaagagactaatgcaacacaagtacagttagttatattaacacatatgtccatggaaagaaataaaaataaaatgtgtaggaagattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|6 : actatacatatgtgtcaagatgagacaaagcatgaacacgtagaacaaaaatgaacaatgcggaaatagccttacggtatctacatttaaaaaatcgcactatgtggacgtaaaataatgtatttgtatgacagacttttgtttttcattttgcacgggatattgtacgacaatgaaacgataaacatgcaatagcattattagaaattgtaaattgttgcgtttacaaagaaactaaacatacaaagtaatatagttgattttcgtaagaaagaaaaggaataataaaataaacagtttcagacaattG-AAAACTGG-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GGAAATGA-TTAATTTCTTGTCGA-TGTAAAATTCTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGACATTAAAACAACACAATTTACTTTTGAAA--ATTAC-TTA-TAACGCGGAGAAAA-A-GG-CAAATGACA-GA-AGAG-G-AAA---TTAAGTTTTCT-TAGCAGA-TTAC-ACTACAGATGTCGGCTTCAGTGATTT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---TGCCAAAAAGGAAGGG-GGGGGGGAGGTCAGACTA-CT-CGACC-AAG----------TA----T--AACAT--------------------GTATG--------------------AA-----------------ATAAAATATGCTCGAAGGAATGattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|7 : GTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTAAGTATTAT--TGTAATTGAAATTAAAACAACACA-TTTACT-TGGGAA--ATTAC-T-A-TAACGCGGACAGACCA-GG-TAAATGGCAATA-TG-G-GGAAA---TTAAGTTATCTATAACAA--TTATTATTAAAGATGTCGCTTTAATTGA-TTTGAAG-GACACACTA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGAAAAAAAACCGCCAAAAA--------AGCGGGGA---CAGACTA-CT-CGACA-AAG----------TATATATTAAACAC--------------------ATATGTCCA--TG----------ACAAAG----------AT---ATGAA------AGGA---AATGC-GACGCATttaaacgtcctttaagtgaactggtttttgttctcaaaaattccaaatgttgttacagtttctatttatcatctaaaaacttacgaaattgtgtgggaacatggacagaatatagaaaatatcggaaagttctaaaattaaagaaattgtcaaatggtgattgaatgtgcctata
gi|8 : GTTAAT--CTTATCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------C--TGTAATTGAAATTAAAACAACACAATTTATTcgtttaagtaaactagtctttgttctcaaaattccaaatgttgttacagtttctaatcatctaaaactcttcgaaattgcgtgggaacatgaaacaaaatatagaatatgtccaaagtttactaaaattaaagaaattgtaaaatggtgaaatgtgcctatatg
gi|8 : -G-AAA---TTAAAACAAC----ACAAT-TTAT-TNNNNAGAGGTCGGCTTCATTGA-TTTGAAG-GACAG--T----------GA--TTTTCTCTTA-T--TTCATAGACAAAA---CGTCAAAAG--------GGAGGGGG----GGACTA-CT-TGACA-AAG----------TATAT-T--AACACATACATACTAACACATACATGTATGTCCA--TG----------GCAAAGAA-AT-AA-AAT---ATAAAACATnnnnagaggtcggcttcattgatttgaaggacagtgattttctcttatttcatagacaaaacgtcaaaagggagggggggactacttgacaaagtatattaacacatacatactaacacatacatgtatgtccatggcaaagaaataaaatataaaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
gi|9 : gttaatcttatcgatgtaatgtgcgaaaagaagctattactgtaattTG-CATGGTG----CATGGACACCA-TTAAAACAATACCGGTAGTT-ACATGTTTGAGTGTAACA-ATTCAAA-CAG--TATTAACAA-CAGA-CACTGTAA-CAAAAA-AATGTGCGTAAGGACACCT-TTA--------------TTACTACAT--TACAGACAGACAG-T-GAT--TC--T-----AATAAATGAATACCCCGGTAATCT-TG-A----------------------TTTA-ACATAA--ATGGGG-AATTTAACCGAATGATAGAAAATTCG--CTTT-GCTAATGAAGGATTGT-TA-TTTGGAC-AA-ATG-------------------A----TTGTTT-ACAC-A-ATAAGA---GGGACTT---CTGGCTACTATAAACA-AAAA------CGAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
Alignments
lowQualScore : 111 222222 1 11 11 333333333333333 111 22 1 22 11111 1111 111111 111 11 111 33333333333 3333333333 22222222 222 11 555555555555555555 1 11 111 111 111111 11 11 11 1 1 11 222 11 111111 1 11 22222222222 222222222222 2222222222 222222222 2222222 11 11111111 1111 11111111111 333333333333 111 111111111 1111 22222 44444444444444444444 22 11 11 1111111111 1 1111 1111 111 444444444 1111 3333333333 4444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 222 777777 6 6 6 5 6 3 1 6 11 8 11 5 6 99 6 111111111111111 6 3 111 99 1 0 0 22 5 1 00 6 6 77777 6 5 5 2222 4 5 666666 5 111 8 11 7777 6 6 222 1 6 1 11111111111 99 7 6 6 7777777777 44444444 6 555 6 3 99 6 3 6 99 6 99 6 00 7 6 6 2 777 666666666666666666 3 6 2 7 66 111 000 77 88 999999 11 11 99 6 1 6 6 7 8 0 11 6 1 0 666 8 11 88 888888 6 3 55 6 1 3 00 3 44444444444 6 6 77 77 5 5 99 3 1 000000000000 1 6 9999999999 666666666 6 77 44 4444444 33 00000000 4444 00000000000 3 333 1 6 6 6 111111111111 000 8888 77 0 1 888888888 0000 3 3 44444 44444444444444444444 33 99 11 5 1 1 0 0 11 8 6 6 6 99 6 6 6 6 1 77 5 888 5 4 8888888888 1 8 5 77 5 1 44 5 5 5 5 5 5 5 888 5 5 0 77 5 1111 0 5 66 888 5 66 66 1 1111 000 111111111 0000 5 5 5 0000000000 5 77 7777777777777777777777777777777777777777777777777777777777777777 0 333 5 6
lowQualScore : ... ...... . . . . . . . . .. . .. . . .. . ............... . . ... .. . . . .. . . .. . . ..... . . . .... . . ...... . ... . .. .... . . ... . . . ........... .. . . . .......... ........ . ... . . .. . . . .. . .. . .. . . . . ... .................. . . . . .. ... ... .. .. ...... .. .. .. . . . . . . . .. . . . ... . .. .. ...... . . .. . . . .. . ........... . . .. .. . . .. . . ............ . . .......... ......... . .. .. ....... .. ........ .... ........... . ... . . . . ............ ... .... .. . . ......... .... . . ..... .................... .. .. .. . . . . . .. . . . . .. . . . . . .. . ... . . .......... . . . .. . . .. . . . . . . . ... . . . .. . .... . . .. ... . .. .. . .... ... ......... .... . . . .......... . .. ................................................................ . ... . .
lowQualScore : 333 111111 7 7 7 7 7 7 7 7 00 0 00 7 7 22 7 333333333333333 7 2 777 22 0 8 8 11 7 4 55 7 7 55555 7 7 7 1111 0 7 444444 7 777 0 00 5555 7 7 333 0 7 7 22222222222 22 3 7 7 8888888888 22222222 7 777 7 2 22 7 2 7 22 7 22 7 22 3 7 7 5 000 888888888888888888 3 7 5 3 55 777 000 99 33 222222 00 00 00 7 3 7 7 5 0 6 00 7 0 8 444 0 00 88 333333 7 2 00 7 7 3 88 2 33333333333 7 7 99 99 7 7 22 2 0 777777777777 7 7 2222222222 777777777 7 99 44 4444444 66 55555555 0000 88888888888 2 888 0 7 7 7 777777777777 000 3333 99 7 4 777777777 0000 2 2 88888 55555555555555555555 00 22 22 0 0 0 8 8 00 0 7 7 3 22 7 7 7 7 5 99 0 888 0 4 7777777777 9 8 6 99 7 4 99 7 7 7 7 7 0 0 888 9 7 1 44 7 0000 2 0 99 888 0 11 11 0 6666 000 000000000 7777 7 7 7 7777777777 7 99 1111111111111111111111111111111111111111111111111111111111111111 1 999 6 7
consensus : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-T---AC--TAAAA-ACT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
Reference ( family-401 ) : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-T---AC--TAAAAGACT-TCTTTAACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
gi|1 : ATGTTATGTTTGTTGCTT----AA-GTTCTT-TTGGTAGTT-TC-GATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAA----CTG-ACTGTACAAGACA-AACATTTA---TAA--TCACAAAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTTAACATGTTTGATT----CAGAGTCAAA-CAG--TAATAA-AA-CAGA-CACTGTAA-CAAAAG-C-TGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TGAAATA-CGAGTG--GTGG-GGAATTTTG-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTC-GACAA-ATG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAG---AAA------GGGGGGGGG--GTA--AGCAA--GAGACCTAACACTAGC-AGA-TATAATAAAACT-AATG-AACAAAAAGAGCAACTACTAATTCTA-GTTAAAGTGCACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGCTGAGGAC-AAAACGTGAACACATAGA-CAAAAATG--CAATACAGAA---A-------AT-GGC-ATCCA--CATTTAC---AAAATCGCA-TAT-CGAACGTAAAATAATATATTTGTGTAACTTAACAGAC-------------TTTGCACGCGATTTGGTTATGACAATGAAAACC-ATTAACATGGAATAGC-GTTATCTAGAAATTGTAATTTATCTAGAAATTGTAATTTTGCCCGC-TTTACA--AAGAAACTATAAAAATTTTATACAAAAGT-AA-ATGATTTG-AACGAATATC-TAAAATTCTCAAAGTTTAGAA-AT-AA-TACGTTCCTATGC-AATAAA---TTG--TAAAACAG--AAAAACATGAATATAAAGAG---C-TACAGTGGAAAATT--G-ATACTAAAAAGTAAA---------------------TAAAAG--T-TCTTTAACCTGAAA--TCAGGACAGGA--ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGACCCGGACAATTCA--AGC-TAGC-GTCTCCTG-TTTA-GCCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACTCAATTTACTGTGGGAA--ATTAC-TTA-C-ACGCGGACAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTATCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTTATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGATT--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACCT-CG-CGACA-AAG----------TATAT-T--AACAC--------------------ATATGCCCA--TG----------ACAAAG-A-ATAAA-AAT---ATAAAATATGTAGGAAGGAATGCGGCACAT
gi|10 : ------GTT--CATTTTTGATT---ACAGATTCAAAGCAG--TGTTAG----CAGG-CACTGTAT-TAAAAG-------TG--------------AGACAAT--TAG------CTATATAGT-CAGGCAGACAA-TTGATTAC-ATTGTTAAATAAATAAATA--------ATATCTG-TATAATGAGTG--ATGGCGGAATTTTACACATAA--ATGGGGGAAAATAACCAATTGATAGAAAATTTGGACTTTGGCT-ATGAATGATTGTGTA-TTCGAGCAAGATGGAGTTGTTTGGAACAATTAAGATTTTATTG-A-AC-A-ATAAGA---GGGACTT---CTGGTTAC--Tt
gi|11 : g--TGA--TTTT-TCGGA-A--T---AAGAAAAAC---CGTGAAAAA--------AAGTGC-A---CAGAATAACT-CGACA-A-G----------TATAT-C--GGCAA--------------------GTGTG-CCA--CG----------ACAAAG-AGAT-A--------ATAAAATA---------GAATGCGG-GCA
gi|12 : tcTGTTAT-TTAATTGC------GA-GTTCTTGTTTGTAGTTTGTTGGTGTTGATTGTGGA-TCTGAAAATCAGGACAGGAGACGGAATTGTAATTT--CAGT--GACTTT-ATTGTTTGACGTCCACAGG-AGAA----------------AAGACATAACATTTATTTTAA--TCACAGAAATAAT-ACCACCAATGCCTCTGTAAAGGTTTG-AG-CA-TGCAGGTGAGCACAAATA-T-AATTAGCATG-TG----CAT-GACACCA-Tccagttttggcaattaaatgtccttgattacattaattcggaaaaattttgttgtttttttttaaacttaaaaattgtacatggacgtgaataaatataaaatgtaccgaaagttattagaattataagattgc
gi|13 : ATTCTACGTTAAAGTATACACGTCCTAACTCGTGAAGTCA--ATAG--TA-ATA-------G-TCAAG------------GTGTGAACAGAGAGACCAAAAATAA-C--TGCAGAAAATA-------AT-GTT-ATCTG--CATTTACAAAAAAATCGCA-CAT-TGG
gi|14 : -TT-ATTACTTGACGTC--CA-------------------------GACA-AAC--------TAA--T----GAAA------CCAACAATGTCTCTGTAAAGGTTTG-AATCA-TGC-GTTG-GCACA---A-TAAACTA-GATG-CG----CATGGACACCA-TTAAAACAATA------ATT-A
gi|15 : t-AATAAAAAGTCG--AAAAATAG--AAAAA------TATAAAGAG---CGTGC--TGAAAAATT--G-ATACT-AAAAGT--A-T-A-TTAAAAAGT---AC--------ATG-TTTTTTACCTTAAG--TTAGGACAGG
gi|16 : ga-----AA-GATTTT-TTG----TT-GT-GATGTTGAG-GTGGA-TCTGAAA-TCAGGACAAGAGACGGAATTGTAAATT--C-GT--GAC-T
gi|17 : gtataaatgtggacatgtatcacaCACGGGATTTAGTTATGACAATGAAAACCGGTGAACATGGAATAGC-ATTATCTTGAAATTGTAATT----------TTG---------CCGC-TTTAC----AGAAATTATAA------CATAC-AAAGT-Acttatgtac
gi|18 : TTTTTT-TA-CAAA-TTAC-TCTAAAACCGTCTGCTTCATTGA-TT-TATGTTACGC--TAACTA-T--TGG--TTTTCTC--A-T--TTCAAAG
gi|19 : ATGTT---TTTGTTG-T-----CA-GTTCTT-TTTGTAGTT-GT-GATGTTGAT-GT-GAATCTGAAA-TCAGGACAGGAGACAAACTGGCGAATgaggggggggggggg
gi|2 : gtgATTAA-AAACAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACA------------------T--TACAGGCAGGCAG-T-GAT----------------------A--------ATCT-TG-A-TA-CGAGTG--GTGG-GGAATTTTA-ACAGAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCA-ATGAAGGA-------------------AG-----------------TCAGA-CTCATTTTACACAA--TAAG------GACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTGTTATCAA--GAGA-CTA-CACTAGC-AGA-TATAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTGATAT-A--ATAG-TTACATAT-C----G-TCAAGATGAGGAC-ATCGCGTGAACACATAGA-CGAAAATGA-CAATACAGAA---A-------AT-GGC----TA--CATTTAC--AAAAATCGAA-TAT-CGGACATAAAATAATGTATT--TGTAACTTAACACACTTTGTTTCTTCATTTTGCACAGGATTTAGTTACGACAATGAAAACCGATTATTATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAAC-----TATA--AACAT-A----GATCTA-CA-AAGTA-------------AAAG--AAAAACATGAA-TAGG--CCTATAC-AG-AGA---GCG--T--AGTGG--AAA---ATTGAT-------G---C------TAAAAAGT------------AAAATA-----A-GTAAAAA-T---ACGTTAA---ACT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGCTTAGC-GTCTCCTG-TTTAGGTCATTGAGTTAAT--CTTGTTGATTGTAA---TGTGCG-ATAAGAG---TATT--------T--TGTAATTGAAATTAAAACAACACAATGTACTGTGTGAAACATTACTTTA-TAACGCGGTATTAC-AGG-TAAATGACA-TA-TG-G-G-GAAAATTTAAGCTTTCT-TAACAAATTTAT-ATAAAGGATGTCGGCTTT--------------GACAC--TA---A-TAATGAGTTTTTTTCAGA-TTATTCAGAGAC-AAA---CATCATAAAGGGAAAGGGGGGGGGG---CAGGCTA-CT-CAACA-AAGA---------TATAT-T--AACAC--------------------ATTAGTCTACCTGGGATATGTGTACAAAA-A-AT-AATGATTTAAGAAAGTATATA
gi|20 : AGGAAGN--ATTT-------T--TGTAATTGACATTAAAACAGCACAATT----------------AC-TTA-TAACGCGGAGGGAA-AGG-TAAATGATA-TA-AG-A-G-GAA---tctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|21 : g-AA-CAT-GC-GGTG-GCACA---A-T-AATTA-TATG-TG----CGTGGACACCA-TTAATACAATA------GTT-ACATGTTTGATT---ACAGATTCAA
gi|22 : aCTA--CATTTAC--AAAAATCGCA-TAC-TGGACGTAAAATAATGAATT--TGTAACT-------CTTTTTTTTTT--TTTT
gi|23 : ggctaaACTT---CCGGTTAC--CAAAGGCGAAA------GGGGGAAGGATGTA--AGCAAATGAGA--TAACACTAGCGAAA-TTTAA-AAAt
gi|24 : AT-TT-ATTGCTTGACGTC--CAGG-GGAAAAGTGTTG-ACTGTTCAAGACA-ATCA-TAA---TAA--ATACAGg
gi|25 : AGA-C-AACGCTTGC-AAAATCTACTAAAAGT-AATGAAACGGAA--AGCAACTACAAATTCTA-Gg
gi|26 : T-TTTGTTGCC-----AAAGTTCTT-TTGGTAGTT-GT-CATG
gi|27 : gggattgtACCAGCAATGCCTCTGTAAAGGTTTGAAA-CAT
gi|28 : -TT-GAAA-GACAC--TA---A-T--TGA--TTTTCTCAGA-C--TTgt
gi|3 : at-GAT-TTGAG-GTGTATCTTGAAA-TCAGGACAGGAGACGGAATTGTAAATTTCC-GTTGGAC-TT-ATTACTTGACGTC--CAGGGAGAAAA---CTGGATCGTACAAGACA-AACATTTA---TAA--TCACAGA--TAATT-CCAACAATGTTTCTGTAAAAGTT-G-AA-CAT-GC-GGTG--CACA-----T-A--TA-CATG-TG----C-TGGACACCATTTAAAAC-ATA------GTT-ACATGTTTGATT---ACAGATTCAAC-CAGTATATTAA-AA-AAGACCACTGTAACCAAAAGCCATGTGTGCAAGGACACCTATTAAACAATGTTAAAGA-TACTACAT--T-CAGGCAGGCAGCT-GATT---AT-----AATAAATGAATA--------ATCT-TG--ATA-CG-GTGTTGGGG-GGAA-TTTA-ACATAAGGGGGGGG-AAATTAACCAATTGATAG-AAATTCG--CTTT-GC--ATGAAGAG--GC-TATTTCGGACAA-TGG-----------------ACAGACCTCATTT-ACACAATGTAAGAAGCAGGACTT---CCGGTTAC--TTAAGA-AAA-----------GGGGG--GTA--AGCAAT-GAGA-CTACAATTAGC-AGA-T-TAATAAAACTAAATG-AACAAAA--G--AACTACTAATTC-A-GTTAAAGTGCACAAATACT-A--AGTAATAT-A--ATAGTTTAC-TAT-T----GTTCAAGATGA-GACAAAAATGTGAACAC-TAG---AGAAATGG-GCATACAGAA---A-------ATGGGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGAACGTAAAA-A----------------TAACAAAC--TG------------GCACGGGA-TTAGTTACGACAATG-AAGCCGATTAACAT-GAATAGCAGTTATCTAGAAA-TGTTATT----------TTG---------CCGC-TTTACACGAAG----TATAA------TATA-----------------TG-AACGAATATC-T-AAATTCTCA---TTTAGAA-AT-AATTACGTTCCTATGCAAATAAA---TTG--TAAAACAG--AAAAACA-GAATATAAAGAG---CG-ACAGTGGAAAATT--GCCTACTAGAAAGTAAA-TAA-GTAAAAA-TAACAT--TAAAAG--T-TATTT--CCTGAAAATTCAGGACAGGAGAACGGAATTGTTAAATCGTGACTTTATTACTTGACGGATCCAGGGAGAAAAACTGA-CCGGAC-ATTCAAGAGC-TAGCGGTCTCCTGTTTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA----------TGTAATTGAAATT-AAACAACTCAA-TTAC-GT-GGAA--ATTAC-TTATTAACGCGGAC-GAC-AGGCTAAA-------A-TG-G-G-ACA---TCACATTGT
gi|4 : gtgatgttgaggtggagatgtagaatctggtggatgttgagagtg-TTTGTTGCTTAATTAG-TTTCTT-TTGGTAGTT-GT-CATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TTTATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAACACA-AGCATTTA---TAAGATCACAGAAATAATA-CCAAC---GTCTCTGTAAAGGTTTG-AAACAT-GC-GGTG-GCACA---AAT-AATTA-CATG-TGACTGCGTGGACACCA-TAAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACGT--TACAGGCAGGCAG-T-GATTATAAT-----ATTAAATGAATA--------ATCT-TG-A-TA-CGAGTG--GTGT-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAAGATTGC-TA-TTCGGACAA-AAGG----------------TCAGA-CTCATTA-AAACAA--TAAGA---AGGGCTTGAACCGTTTAC--TAAAAA-AAAAAAAAAGGGGGGGGGG--GTA--AGCAA--GATA-CTA-CACTAGC-AGA-TCTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTGATAT-ATAACAG-TTACATAT-TCGTTG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GACTATCTATACATTTAC--AAAAATCGCA-TAT-CGAACGTAAAATAATATATT--TGTAACTTAACAGACTTTGCTTTTTCATTTTGCACGGGATTTAGTTACGACATTGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGT-TTTACA--AAGAAAGTATAA------TATAC-AAAGTAAA-ATGATTTGTAA-GAATATC-TAAAATTCT-AAAGTTAAGAA-AT-AA-TATG------------TAAA---TCG--CATAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAATTT--G-ATACTAAAAAGTAAA-TAA-GTAAAAA-T---ACG-TAAA--ACT-TCTTT-ACCTGAAA--TCAGGACA-GAG-AGGGAATTGTAAATTCGTGACTTTTTTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGC-TAGC-ATCTCCTG-TTTT-GTCACTGAGTTAAT--CTTGTCAA-TGTAA---TGTGCG-AAAAGAAGC-TGTTA-------TAAGGTAATTGAAATTAAAACAACACAATTTACTGTGataaaacgatt
gi|5 : atgTACATATGT----G-TCAAGATGAG-AC-AAAGCATGAACACGTAGAACAAAAATGAACAATGCGGAA---ATAGCCTTAC-GGT-ATCTA--CATTTA---AAAAATCGCACTATGTGGACGTAAAATAATGTATT--TGTA---TGACAGACTTTTGTTTTTCATTTTGCACGGGATATTG-TACGACAATGAAA--CGATAAACATGCAATAGC-ATTAT-TAGAAATTGTAA-A----------TTG---------TTGCGTTTACA--AAGAAACTA-AA------CATAC-AAAGT-AATATAGTT------GATTTTCGTAAG------AAAGAAAAGGA-AT-AA-TA-------A----AATAAA---CAGTTTCAGACAATTAAGAACATGAATAAAAAGt
gi|5 : acta--AAGAA--CATGA-------ATAA-AAAGT-AA-ATG-TTTG-AA-GAATATT-GAAATTTCTCAA-GTTTA----------------CTTATGC-AATAAA---TCG--CAAAACAG--AAAAACATGAATATAAAAAGAGGCGTA--GTGAAAAATTTGG-ATACTAAAA-GTAAAAT-AAGTAAAA--T---AC--TAAAA-ACTGTCTTTA--CTGAAT--TCAGGACAGAAA-A-----------------GACT--AT-ACTTGAGT--TCCA-GGAA-AAAACTGA-CCAAGCGATTCA--AGC-TAG--------TG-TTTA-TGCATTGAGTTAAT---TTGTCAA-TGTAA---TG-GTGAAAAAGAAGCTTATTA-------T--TATAATT-AAATTAAAACAACACAA-TTACT-TTGGAA--ATTAC-TTATTAACACGGAGATAT--GG-CAAATGACA-TACTG-GAG-AAG---TTAAGTT-TCT-TAACAAA-TTAT-ACT-AAGATGTCAGCTTCATTGA-C-----------C--TA---AGT--TGA--TTTTCTCAGA----TTCAGAGACAAAA---TGCCAAAAA---------GGGGGAA---GAGACTA-ATGCAACACAAGTACAGTTAGTTATAT-T--AACAC--------------------ATATGTCCA--TG----------GAAAGA-A-AT-AA-AA----ATAAAATGTGTAGGAAGtaaatgtttgaagaatattgaaatttctcaagtttacttatgcaataaatcgcaaaacagaaaaacatgaatataaaaagaggcgtagtgaaaaatttggatactaaaagtaaaataagtaaaatactaaaaactgtctttactgaattcaggacagaaaagactatacttgagttccaggaaaaaactgaccaagcgattcaagctagtgtttatgcattgagttaatttgtcaatgtaatggtgaaaaagaagcttattattataattaaattaaaacaacacaattactttggaaattacttattaacacggagatatggcaaatgacatactggagaagttaagtttcttaacaaattatactaagatgtcagcttcattgacctaagttgattttctcagattcagagacaaaatgccaaaaagggggaagagactaatgcaacacaagtacagttagttatattaacacatatgtccatggaaagaaataaaaataaaatgtgtaggaagattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|6 : actatacatatgtgtcaagatgagacaaagcatgaacacgtagaacaaaaatgaacaatgcggaaatagccttacggtatctacatttaaaaaatcgcactatgtggacgtaaaataatgtatttgtatgacagacttttgtttttcattttgcacgggatattgtacgacaatgaaacgataaacatgcaatagcattattagaaattgtaaattgttgcgtttacaaagaaactaaacatacaaagtaatatagttgattttcgtaagaaagaaaaggaataataaaataaacagtttcagacaattG-AAAACTGG-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GGAAATGA-TTAATTTCTTGTCGA-TGTAAAATTCTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGACATTAAAACAACACAATTTACTTTTGAAA--ATTAC-TTA-TAACGCGGAGAAAA-AGG-CAAATGACA-GA-AGAG-G-AAA---TTAAGTTTTCT-TAGCAGA-TTAC-ACTACAGATGTCGGCTTCAGTGATTT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---TGCCAAAAAGGAAGGG-GGGGGGGAGGTCAGACTA-CT-CGACC-AAG----------TA----T--AACAT--------------------GTATG--------------------AA-----------------ATAAAATATGCTCGAAGGAATGattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|7 : GTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTAAGTATTAT--TGTAATTGAAATTAAAACAACACA-TTTACT-TGGGAA--ATTAC-T-A-TAACGCGGACAGACCAGG-TAAATGGCAATA-TG-G-GGAAA---TTAAGTTATCTATAACAA--TTATTATTAAAGATGTCGCTTTAATTGA-TTTGAAG-GACACACTA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGAAAAAAAACCGCCAAAAA--------AGCGGGGA---CAGACTA-CT-CGACA-AAG----------TATATATTAAACAC--------------------ATATGTCCA--TG----------ACAAAG----------AT---ATGAA------AGGA---AATGCGACGCATttaaacgtcctttaagtgaactggtttttgttctcaaaaattccaaatgttgttacagtttctatttatcatctaaaaacttacgaaattgtgtgggaacatggacagaatatagaaaatatcggaaagttctaaaattaaagaaattgtcaaatggtgattgaatgtgcctata
gi|8 : GTTAAT--CTTATCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------C--TGTAATTGAAATTAAAACAACACAATTTATTcgtttaagtaaactagtctttgttctcaaaattccaaatgttgttacagtttctaatcatctaaaactcttcgaaattgcgtgggaacatgaaacaaaatatagaatatgtccaaagtttactaaaattaaagaaattgtaaaatggtgaaatgtgcctatatg
gi|8 : -G-AAA---TTAAAACAAC----ACAAT-TTAT-TNNNNAGAGGTCGGCTTCATTGA-TTTGAAG-GACAG--T----------GA--TTTTCTCTTA-T--TTCATAGACAAAA---CGTCAAAAG--------GGAGGGGG----GGACTA-CT-TGACA-AAG----------TATAT-T--AACACATACATACTAACACATACATGTATGTCCA--TG----------GCAAAGAA-AT-AA-AAT---ATAAAACATnnnnagaggtcggcttcattgatttgaaggacagtgattttctcttatttcatagacaaaacgtcaaaagggagggggggactacttgacaaagtatattaacacatacatactaacacatacatgtatgtccatggcaaagaaataaaatataaaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
gi|9 : gttaatcttatcgatgtaatgtgcgaaaagaagctattactgtaattTG-CATGGTG----CATGGACACCA-TTAAAACAATACCGGTAGTT-ACATGTTTGAGTGTAACA-ATTCAAA-CAG--TATTAACAA-CAGA-CACTGTAA-CAAAAA-AATGTGCGTAAGGACACCT-TTA--------------TTACTACAT--TACAGACAGACAG-T-GATTC---T-----AATAAATGAATACCCCGGTAATCT-TG-A----------------------TTTA-ACATAA--ATGGGG-AATTTAACCGAATGATAGAAAATTCG--CTTT-GCTAATGAAGGATTGT-TA-TTTGGACAA-ATG-------------------A----TTGTTT-ACAC-A-ATAAGA---GGGACTT---CTGGCTACTATAAACA-AAAA------CGAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
Alignments
lowQualScore : 111 222222 1 11 11 333333333333333 111 22 1 22 11111 1111 111111 111 11 111 33333333333 3333333333 22222222 222 11 555555555555555555 1 11 111 111 111111 11 11 11 1 1 11 222 11 111111 1 11 22222222222 222222222222 2222222222 222222222 2222222 11 11111111 1111 11111111111 333333333333 111 111111111 1111 22222 3333 11 11 1111111111 1 1111 1111 111 444444444 1111 3333333333 4444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 222 777777 6 6 6 5 6 3 1 6 11 8 11 5 6 99 6 111111111111111 6 3 111 99 1 0 0 22 5 1 00 6 6 77777 6 5 5 2222 4 5 666666 5 111 8 11 7777 6 6 222 1 6 1 11111111111 99 7 6 6 7777777777 44444444 6 555 6 3 99 6 3 6 99 6 99 6 00 7 6 6 2 777 666666666666666666 3 6 2 7 66 111 000 77 88 999999 11 11 99 6 1 6 6 7 8 0 11 6 1 0 666 8 11 88 888888 6 3 55 6 1 3 00 3 44444444444 6 6 77 77 5 5 99 3 1 000000000000 1 6 9999999999 666666666 6 77 44 4444444 33 00000000 4444 00000000000 3 333 1 6 6 6 111111111111 000 8888 77 0 1 888888888 0000 3 3 00000 99 0000 2 6 6 99 11 5 1 1 0 0 11 8 6 6 6 99 6 6 6 6 1 77 5 888 5 4 8888888888 1 8 5 77 5 1 44 5 5 5 5 5 5 5 888 5 5 0 77 5 1111 0 5 66 888 5 66 66 1 1111 000 111111111 0000 5 5 5 0000000000 5 77 7777777777777777777777777777777777777777777777777777777777777777 0 333 5 6
lowQualScore : ... ...... . . . . . . . . .. . .. . . .. . ............... . . ... .. . . . .. . . .. . . ..... . . . .... . . ...... . ... . .. .... . . ... . . . ........... .. . . . .......... ........ . ... . . .. . . . .. . .. . .. . . . . ... .................. . . . . .. ... ... .. .. ...... .. .. .. . . . . . . . .. . . . ... . .. .. ...... . . .. . . . .. . ........... . . .. .. . . .. . . ............ . . .......... ......... . .. .. ....... .. ........ .... ........... . ... . . . . ............ ... .... .. . . ......... .... . . ..... .. .... . . . .. .. . . . . . .. . . . . .. . . . . . .. . ... . . .......... . . . .. . . .. . . . . . . . ... . . . .. . .... . . .. ... . .. .. . .... ... ......... .... . . . .......... . .. ................................................................ . ... . .
lowQualScore : 333 111111 7 7 7 7 7 7 7 7 00 0 00 7 7 22 7 333333333333333 7 2 777 22 0 8 8 11 7 4 55 7 7 55555 7 7 7 1111 0 7 444444 7 777 0 00 5555 7 7 333 0 7 7 22222222222 22 3 7 7 8888888888 22222222 7 777 7 2 22 7 2 7 22 7 22 7 22 3 7 7 5 000 888888888888888888 3 7 5 3 55 777 000 99 33 222222 00 00 00 7 3 7 7 5 0 6 00 7 0 8 444 0 00 88 333333 7 2 00 7 7 3 88 2 33333333333 7 7 99 99 7 7 22 2 0 777777777777 7 7 2222222222 777777777 7 99 44 4444444 66 55555555 0000 88888888888 2 888 0 7 7 7 777777777777 000 3333 99 7 4 777777777 0000 2 2 88888 88 5555 5 7 7 22 22 0 0 0 8 8 00 0 7 7 3 22 7 7 7 7 5 99 0 888 0 4 7777777777 9 8 6 99 7 4 99 7 7 7 7 7 0 0 888 9 7 1 44 7 0000 2 0 99 888 0 11 11 0 6666 000 000000000 7777 7 7 7 7777777777 7 99 1111111111111111111111111111111111111111111111111111111111111111 1 999 6 7
consensus : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-TAC----AAAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
Reference ( family-401 ) : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-TACTA--AAAACT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
gi|1 : ATGTTATGTTTGTTGCTT----AA-GTTCTT-TTGGTAGTT-TC-GATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAA----CTG-ACTGTACAAGACA-AACATTTA---TAA--TCACAAAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTTAACATGTTTGATT----CAGAGTCAAA-CAG--TAATAA-AA-CAGA-CACTGTAA-CAAAAG-C-TGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TGAAATA-CGAGTG--GTGG-GGAATTTTG-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTC-GACAA-ATG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAG---AAA------GGGGGGGGG--GTA--AGCAA--GAGACCTAACACTAGC-AGA-TATAATAAAACT-AATG-AACAAAAAGAGCAACTACTAATTCTA-GTTAAAGTGCACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGCTGAGGAC-AAAACGTGAACACATAGA-CAAAAATG--CAATACAGAA---A-------AT-GGC-ATCCA--CATTTAC---AAAATCGCA-TAT-CGAACGTAAAATAATATATTTGTGTAACTTAACAGAC-------------TTTGCACGCGATTTGGTTATGACAATGAAAACC-ATTAACATGGAATAGC-GTTATCTAGAAATTGTAATTTATCTAGAAATTGTAATTTTGCCCGC-TTTACA--AAGAAACTATAAAAATTTTATACAAAAGT-AA-ATGATTTG-AACGAATATC-TAAAATTCTCAAAGTTTAGAA-AT-AA-TACGTTCCTATGC-AATAAA---TTG--TAAAACAG--AAAAACATGAATATAAAGAG---C-TACAGTGGAAAATT--G-ATACTAAAAAGTAAA-T------------------AAAAGT-TCTTTAACCTGAAA--TCAGGACAGGA--ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGACCCGGACAATTCA--AGC-TAGC-GTCTCCTG-TTTA-GCCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACTCAATTTACTGTGGGAA--ATTAC-TTA-C-ACGCGGACAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTATCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTTATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGATT--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACCT-CG-CGACA-AAG----------TATAT-T--AACAC--------------------ATATGCCCA--TG----------ACAAAG-A-ATAAA-AAT---ATAAAATATGTAGGAAGGAATGCGGCACAT
gi|10 : ------GTT--CATTTTTGATT---ACAGATTCAAAGCAG--TGTTAG----CAGG-CACTGTAT-TAAAAG-------TG--------------AGACAAT--TAG------CTATATAGT-CAGGCAGACAA-TTGATTAC-ATTGTTAAATAAATAAATA--------ATATCTG-TATAATGAGTG--ATGGCGGAATTTTACACATAA--ATGGGGGAAAATAACCAATTGATAGAAAATTTGGACTTTGGCT-ATGAATGATTGTGTA-TTCGAGCAAGATGGAGTTGTTTGGAACAATTAAGATTTTATTG-A-AC-A-ATAAGA---GGGACTT---CTGGTTAC--Tt
gi|11 : g--TGA--TTTT-TCGGA-A--T---AAGAAAAAC---CGTGAAAAA--------AAGTGC-A---CAGAATAACT-CGACA-A-G----------TATAT-C--GGCAA--------------------GTGTG-CCA--CG----------ACAAAG-AGAT-A--------ATAAAATA---------GAATGCGG-GCA
gi|12 : tcTGTTAT-TTAATTGC------GA-GTTCTTGTTTGTAGTTTGTTGGTGTTGATTGTGGA-TCTGAAAATCAGGACAGGAGACGGAATTGTAATTT--CAGT--GACTTT-ATTGTTTGACGTCCACAGG-AGAA----------------AAGACATAACATTTATTTTAA--TCACAGAAATAAT-ACCACCAATGCCTCTGTAAAGGTTTG-AG-CA-TGCAGGTGAGCACAAATA-T-AATTAGCATG-TG----CAT-GACACCA-Tccagttttggcaattaaatgtccttgattacattaattcggaaaaattttgttgtttttttttaaacttaaaaattgtacatggacgtgaataaatataaaatgtaccgaaagttattagaattataagattgc
gi|13 : ATTCTACGTTAAAGTATACACGTCCTAACTCGTGAAGTCA--ATAG--TA-ATA-------G-TCAAG------------GTGTGAACAGAGAGACCAAAAATAA-C--TGCAGAAAATA-------AT-GTT-ATCTG--CATTTACAAAAAAATCGCA-CAT-TGG
gi|14 : -TT-ATTACTTGACGTC--CA-------------------------GACA-AAC--------TAA--T----GAAA------CCAACAATGTCTCTGTAAAGGTTTG-AATCA-TGC-GTTG-GCACA---A-TAAACTA-GATG-CG----CATGGACACCA-TTAAAACAATA------ATT-A
gi|15 : t-AATAAAAAGTCG--AAAAATAG--AAAAA------TATAAAGAG---CGTGC--TGAAAAATT--G-ATACT-AAAAGT--A-T-A-TTAAAAAGTAC------ATGT-TTTTT-ACCTTAAG--TTAGGACAGG
gi|16 : ga-----AA-GATTTT-TTG----TT-GT-GATGTTGAG-GTGGA-TCTGAAA-TCAGGACAAGAGACGGAATTGTAAATT--C-GT--GAC-T
gi|17 : gtataaatgtggacatgtatcacaCACGGGATTTAGTTATGACAATGAAAACCGGTGAACATGGAATAGC-ATTATCTTGAAATTGTAATT----------TTG---------CCGC-TTTAC----AGAAATTATAA------CATAC-AAAGT-Acttatgtac
gi|18 : TTTTTT-TA-CAAA-TTAC-TCTAAAACCGTCTGCTTCATTGA-TT-TATGTTACGC--TAACTA-T--TGG--TTTTCTC--A-T--TTCAAAG
gi|19 : ATGTT---TTTGTTG-T-----CA-GTTCTT-TTTGTAGTT-GT-GATGTTGAT-GT-GAATCTGAAA-TCAGGACAGGAGACAAACTGGCGAATgaggggggggggggg
gi|2 : gtgATTAA-AAACAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACA------------------T--TACAGGCAGGCAG-T-GAT----------------------A--------ATCT-TG-A-TA-CGAGTG--GTGG-GGAATTTTA-ACAGAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCA-ATGAAGGA-------------------AG-----------------TCAGA-CTCATTTTACACAA--TAAG------GACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTGTTATCAA--GAGA-CTA-CACTAGC-AGA-TATAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTGATAT-A--ATAG-TTACATAT-C----G-TCAAGATGAGGAC-ATCGCGTGAACACATAGA-CGAAAATGA-CAATACAGAA---A-------AT-GGC----TA--CATTTAC--AAAAATCGAA-TAT-CGGACATAAAATAATGTATT--TGTAACTTAACACACTTTGTTTCTTCATTTTGCACAGGATTTAGTTACGACAATGAAAACCGATTATTATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAAC-----TATA--AACAT-A----GATCTA-CA-AAGTA-------------AAAG--AAAAACATGAA-TAGG--CCTATAC-AG-AGA---GCG--T--AGTGG--AAA---ATTGAT-------G---C------TAAAAAGT------------AAAATA-----A-GTAAAAA-TACGT--TAAACT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGCTTAGC-GTCTCCTG-TTTAGGTCATTGAGTTAAT--CTTGTTGATTGTAA---TGTGCG-ATAAGAG---TATT--------T--TGTAATTGAAATTAAAACAACACAATGTACTGTGTGAAACATTACTTTA-TAACGCGGTATTAC-AGG-TAAATGACA-TA-TG-G-G-GAAAATTTAAGCTTTCT-TAACAAATTTAT-ATAAAGGATGTCGGCTTT--------------GACAC--TA---A-TAATGAGTTTTTTTCAGA-TTATTCAGAGAC-AAA---CATCATAAAGGGAAAGGGGGGGGGG---CAGGCTA-CT-CAACA-AAGA---------TATAT-T--AACAC--------------------ATTAGTCTACCTGGGATATGTGTACAAAA-A-AT-AATGATTTAAGAAAGTATATA
gi|20 : AGGAAGN--ATTT-------T--TGTAATTGACATTAAAACAGCACAATT----------------AC-TTA-TAACGCGGAGGGAA-AGG-TAAATGATA-TA-AG-A-G-GAA---tctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|21 : g-AA-CAT-GC-GGTG-GCACA---A-T-AATTA-TATG-TG----CGTGGACACCA-TTAATACAATA------GTT-ACATGTTTGATT---ACAGATTCAA
gi|22 : aCTA--CATTTAC--AAAAATCGCA-TAC-TGGACGTAAAATAATGAATT--TGTAACT-------CTTTTTTTTTT--TTTT
gi|23 : ggctaaACTT---CCGGTTAC--CAAAGGCGAAA------GGGGGAAGGATGTA--AGCAAATGAGA--TAACACTAGCGAAA-TTTAA-AAAt
gi|24 : AT-TT-ATTGCTTGACGTC--CAGG-GGAAAAGTGTTG-ACTGTTCAAGACA-ATCA-TAA---TAA--ATACAGg
gi|25 : AGA-C-AACGCTTGC-AAAATCTACTAAAAGT-AATGAAACGGAA--AGCAACTACAAATTCTA-Gg
gi|26 : T-TTTGTTGCC-----AAAGTTCTT-TTGGTAGTT-GT-CATG
gi|27 : gggattgtACCAGCAATGCCTCTGTAAAGGTTTGAAA-CAT
gi|28 : -TT-GAAA-GACAC--TA---A-T--TGA--TTTTCTCAGA-C--TTgt
gi|3 : at-GAT-TTGAG-GTGTATCTTGAAA-TCAGGACAGGAGACGGAATTGTAAATTTCC-GTTGGAC-TT-ATTACTTGACGTC--CAGGGAGAAAA---CTGGATCGTACAAGACA-AACATTTA---TAA--TCACAGA--TAATT-CCAACAATGTTTCTGTAAAAGTT-G-AA-CAT-GC-GGTG--CACA-----T-A--TA-CATG-TG----C-TGGACACCATTTAAAAC-ATA------GTT-ACATGTTTGATT---ACAGATTCAAC-CAGTATATTAA-AA-AAGACCACTGTAACCAAAAGCCATGTGTGCAAGGACACCTATTAAACAATGTTAAAGA-TACTACAT--T-CAGGCAGGCAGCT-GATT---AT-----AATAAATGAATA--------ATCT-TG--ATA-CG-GTGTTGGGG-GGAA-TTTA-ACATAAGGGGGGGG-AAATTAACCAATTGATAG-AAATTCG--CTTT-GC--ATGAAGAG--GC-TATTTCGGACAA-TGG-----------------ACAGACCTCATTT-ACACAATGTAAGAAGCAGGACTT---CCGGTTAC--TTAAGA-AAA-----------GGGGG--GTA--AGCAAT-GAGA-CTACAATTAGC-AGA-T-TAATAAAACTAAATG-AACAAAA--G--AACTACTAATTC-A-GTTAAAGTGCACAAATACT-A--AGTAATAT-A--ATAGTTTAC-TAT-T----GTTCAAGATGA-GACAAAAATGTGAACAC-TAG---AGAAATGG-GCATACAGAA---A-------ATGGGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGAACGTAAAA-A----------------TAACAAAC--TG------------GCACGGGA-TTAGTTACGACAATG-AAGCCGATTAACAT-GAATAGCAGTTATCTAGAAA-TGTTATT----------TTG---------CCGC-TTTACACGAAG----TATAA------TATA-----------------TG-AACGAATATC-T-AAATTCTCA---TTTAGAA-AT-AATTACGTTCCTATGCAAATAAA---TTG--TAAAACAG--AAAAACA-GAATATAAAGAG---CG-ACAGTGGAAAATT--GCCTACTAGAAAGTAAA-TAA-GTAAAAA-TAACATTAAAAGT-TATTT--CCTGAAAATTCAGGACAGGAGAACGGAATTGTTAAATCGTGACTTTATTACTTGACGGATCCAGGGAGAAAAACTGA-CCGGAC-ATTCAAGAGC-TAGCGGTCTCCTGTTTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA----------TGTAATTGAAATT-AAACAACTCAA-TTAC-GT-GGAA--ATTAC-TTATTAACGCGGAC-GAC-AGGCTAAA-------A-TG-G-G-ACA---TCACATTGT
gi|4 : gtgatgttgaggtggagatgtagaatctggtggatgttgagagtg-TTTGTTGCTTAATTAG-TTTCTT-TTGGTAGTT-GT-CATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TTTATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAACACA-AGCATTTA---TAAGATCACAGAAATAATA-CCAAC---GTCTCTGTAAAGGTTTG-AAACAT-GC-GGTG-GCACA---AAT-AATTA-CATG-TGACTGCGTGGACACCA-TAAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACGT--TACAGGCAGGCAG-T-GATTATAAT-----ATTAAATGAATA--------ATCT-TG-A-TA-CGAGTG--GTGT-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAAGATTGC-TA-TTCGGACAA-AAGG----------------TCAGA-CTCATTA-AAACAA--TAAGA---AGGGCTTGAACCGTTTAC--TAAAAA-AAAAAAAAAGGGGGGGGGG--GTA--AGCAA--GATA-CTA-CACTAGC-AGA-TCTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTGATAT-ATAACAG-TTACATAT-TCGTTG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GACTATCTATACATTTAC--AAAAATCGCA-TAT-CGAACGTAAAATAATATATT--TGTAACTTAACAGACTTTGCTTTTTCATTTTGCACGGGATTTAGTTACGACATTGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGT-TTTACA--AAGAAAGTATAA------TATAC-AAAGTAAA-ATGATTTGTAA-GAATATC-TAAAATTCT-AAAGTTAAGAA-AT-AA-TATG------------TAAA---TCG--CATAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAATTT--G-ATACTAAAAAGTAAA-TAA-GTAAAAA-TACGT--AAAACT-TCTTT-ACCTGAAA--TCAGGACA-GAG-AGGGAATTGTAAATTCGTGACTTTTTTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGC-TAGC-ATCTCCTG-TTTT-GTCACTGAGTTAAT--CTTGTCAA-TGTAA---TGTGCG-AAAAGAAGC-TGTTA-------TAAGGTAATTGAAATTAAAACAACACAATTTACTGTGataaaacgatt
gi|5 : atgTACATATGT----G-TCAAGATGAG-AC-AAAGCATGAACACGTAGAACAAAAATGAACAATGCGGAA---ATAGCCTTAC-GGT-ATCTA--CATTTA---AAAAATCGCACTATGTGGACGTAAAATAATGTATT--TGTA---TGACAGACTTTTGTTTTTCATTTTGCACGGGATATTG-TACGACAATGAAA--CGATAAACATGCAATAGC-ATTAT-TAGAAATTGTAA-A----------TTG---------TTGCGTTTACA--AAGAAACTA-AA------CATAC-AAAGT-AATATAGTT------GATTTTCGTAAG------AAAGAAAAGGA-AT-AA-TA-------A----AATAAA---CAGTTTCAGACAATTAAGAACATGAATAAAAAGt
gi|5 : acta--AAGAA--CATGA-------ATAA-AAAGT-AA-ATG-TTTG-AA-GAATATT-GAAATTTCTCAA-GTTTA----------------CTTATGC-AATAAA---TCG--CAAAACAG--AAAAACATGAATATAAAAAGAGGCGTA--GTGAAAAATTTGG-ATACTAAAA-GTAAAAT-AAGTAAAA--TACTA--AAAACTGTCTTT-AC-TGAAT--TCAGGACAGAAA-A-----------------GACT--AT-ACTTGAGT--TCCA-GGAA-AAAACTGA-CCAAGCGATTCA--AGC-TAG--------TG-TTTA-TGCATTGAGTTAAT---TTGTCAA-TGTAA---TG-GTGAAAAAGAAGCTTATTA-------T--TATAATT-AAATTAAAACAACACAA-TTACT-TTGGAA--ATTAC-TTATTAACACGGAGATAT--GG-CAAATGACA-TACTG-GAG-AAG---TTAAGTT-TCT-TAACAAA-TTAT-ACT-AAGATGTCAGCTTCATTGA-C-----------C--TA---AGT--TGA--TTTTCTCAGA----TTCAGAGACAAAA---TGCCAAAAA---------GGGGGAA---GAGACTA-ATGCAACACAAGTACAGTTAGTTATAT-T--AACAC--------------------ATATGTCCA--TG----------GAAAGA-A-AT-AA-AA----ATAAAATGTGTAGGAAGtaaatgtttgaagaatattgaaatttctcaagtttacttatgcaataaatcgcaaaacagaaaaacatgaatataaaaagaggcgtagtgaaaaatttggatactaaaagtaaaataagtaaaatactaaaaactgtctttactgaattcaggacagaaaagactatacttgagttccaggaaaaaactgaccaagcgattcaagctagtgtttatgcattgagttaatttgtcaatgtaatggtgaaaaagaagcttattattataattaaattaaaacaacacaattactttggaaattacttattaacacggagatatggcaaatgacatactggagaagttaagtttcttaacaaattatactaagatgtcagcttcattgacctaagttgattttctcagattcagagacaaaatgccaaaaagggggaagagactaatgcaacacaagtacagttagttatattaacacatatgtccatggaaagaaataaaaataaaatgtgtaggaagattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|6 : actatacatatgtgtcaagatgagacaaagcatgaacacgtagaacaaaaatgaacaatgcggaaatagccttacggtatctacatttaaaaaatcgcactatgtggacgtaaaataatgtatttgtatgacagacttttgtttttcattttgcacgggatattgtacgacaatgaaacgataaacatgcaatagcattattagaaattgtaaattgttgcgtttacaaagaaactaaacatacaaagtaatatagttgattttcgtaagaaagaaaaggaataataaaataaacagtttcagacaattG-AAAACTGG-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GGAAATGA-TTAATTTCTTGTCGA-TGTAAAATTCTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGACATTAAAACAACACAATTTACTTTTGAAA--ATTAC-TTA-TAACGCGGAGAAAA-AGG-CAAATGACA-GA-AGAG-G-AAA---TTAAGTTTTCT-TAGCAGA-TTAC-ACTACAGATGTCGGCTTCAGTGATTT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---TGCCAAAAAGGAAGGG-GGGGGGGAGGTCAGACTA-CT-CGACC-AAG----------TA----T--AACAT--------------------GTATG--------------------AA-----------------ATAAAATATGCTCGAAGGAATGattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|7 : GTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTAAGTATTAT--TGTAATTGAAATTAAAACAACACA-TTTACT-TGGGAA--ATTAC-T-A-TAACGCGGACAGACCAGG-TAAATGGCAATA-TG-G-GGAAA---TTAAGTTATCTATAACAA--TTATTATTAAAGATGTCGCTTTAATTGA-TTTGAAG-GACACACTA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGAAAAAAAACCGCCAAAAA--------AGCGGGGA---CAGACTA-CT-CGACA-AAG----------TATATATTAAACAC--------------------ATATGTCCA--TG----------ACAAAG----------AT---ATGAA------AGGA---AATGCGACGCATttaaacgtcctttaagtgaactggtttttgttctcaaaaattccaaatgttgttacagtttctatttatcatctaaaaacttacgaaattgtgtgggaacatggacagaatatagaaaatatcggaaagttctaaaattaaagaaattgtcaaatggtgattgaatgtgcctata
gi|8 : GTTAAT--CTTATCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------C--TGTAATTGAAATTAAAACAACACAATTTATTcgtttaagtaaactagtctttgttctcaaaattccaaatgttgttacagtttctaatcatctaaaactcttcgaaattgcgtgggaacatgaaacaaaatatagaatatgtccaaagtttactaaaattaaagaaattgtaaaatggtgaaatgtgcctatatg
gi|8 : -G-AAA---TTAAAACAAC----ACAAT-TTAT-TNNNNAGAGGTCGGCTTCATTGA-TTTGAAG-GACAG--T----------GA--TTTTCTCTTA-T--TTCATAGACAAAA---CGTCAAAAG--------GGAGGGGG----GGACTA-CT-TGACA-AAG----------TATAT-T--AACACATACATACTAACACATACATGTATGTCCA--TG----------GCAAAGAA-AT-AA-AAT---ATAAAACATnnnnagaggtcggcttcattgatttgaaggacagtgattttctcttatttcatagacaaaacgtcaaaagggagggggggactacttgacaaagtatattaacacatacatactaacacatacatgtatgtccatggcaaagaaataaaatataaaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
gi|9 : gttaatcttatcgatgtaatgtgcgaaaagaagctattactgtaattTG-CATGGTG----CATGGACACCA-TTAAAACAATACCGGTAGTT-ACATGTTTGAGTGTAACA-ATTCAAA-CAG--TATTAACAA-CAGA-CACTGTAA-CAAAAA-AATGTGCGTAAGGACACCT-TTA--------------TTACTACAT--TACAGACAGACAG-T-GATTC---T-----AATAAATGAATACCCCGGTAATCT-TG-A----------------------TTTA-ACATAA--ATGGGG-AATTTAACCGAATGATAGAAAATTCG--CTTT-GCTAATGAAGGATTGT-TA-TTTGGACAA-ATG-------------------A----TTGTTT-ACAC-A-ATAAGA---GGGACTT---CTGGCTACTATAAACA-AAAA------CGAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
Alignments
lowQualScore : 111 222222 1 11 11 333333333333333 111 22 1 22 11111 1111 111111 111 11 111 33333333333 3333333333 22222222 222 11 555555555555555555 1 11 111 111 111111 11 11 11 1 1 11 222 11 111111 1 11 22222222222 222222222222 2222222222 222222222 2222222 11 11111111 1111 11111111111 333333333333 111 111111111 1111 22222 4444444444 11 11 1111111111 1 1111 1111 111 444444444 1111 3333333333 4444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 222 777777 6 6 6 5 6 3 1 6 11 8 11 5 6 99 6 111111111111111 6 3 111 99 1 0 0 22 5 1 00 6 6 77777 6 5 5 2222 4 5 666666 5 111 8 11 7777 6 6 222 1 6 1 11111111111 99 7 6 6 7777777777 44444444 6 555 6 3 99 6 3 6 99 6 99 6 00 7 6 6 2 777 666666666666666666 3 6 2 7 66 111 000 77 88 999999 11 11 99 6 1 6 6 7 8 0 11 6 1 0 666 8 11 88 888888 6 3 55 6 1 3 00 3 44444444444 6 6 77 77 5 5 99 3 1 000000000000 1 6 9999999999 666666666 6 77 44 4444444 33 00000000 4444 00000000000 3 333 1 6 6 6 111111111111 000 8888 77 0 1 888888888 0000 3 3 00000 99 0000000000 1 6 6 99 11 5 1 1 0 0 11 8 6 6 6 99 6 6 6 6 1 77 5 888 5 4 8888888888 1 8 5 77 5 1 44 5 5 5 5 5 5 5 888 5 5 0 77 5 1111 0 5 66 888 5 66 66 1 1111 000 111111111 0000 5 5 5 0000000000 5 77 7777777777777777777777777777777777777777777777777777777777777777 0 333 5 6
lowQualScore : ... ...... . . . . . . . . .. . .. . . .. . ............... . . ... .. . . . .. . . .. . . ..... . . . .... . . ...... . ... . .. .... . . ... . . . ........... .. . . . .......... ........ . ... . . .. . . . .. . .. . .. . . . . ... .................. . . . . .. ... ... .. .. ...... .. .. .. . . . . . . . .. . . . ... . .. .. ...... . . .. . . . .. . ........... . . .. .. . . .. . . ............ . . .......... ......... . .. .. ....... .. ........ .... ........... . ... . . . . ............ ... .... .. . . ......... .... . . ..... .. .......... . . . .. .. . . . . . .. . . . . .. . . . . . .. . ... . . .......... . . . .. . . .. . . . . . . . ... . . . .. . .... . . .. ... . .. .. . .... ... ......... .... . . . .......... . .. ................................................................ . ... . .
lowQualScore : 333 111111 7 7 7 7 7 7 7 7 00 0 00 7 7 22 7 333333333333333 7 2 777 22 0 8 8 11 7 4 55 7 7 55555 7 7 7 1111 0 7 444444 7 777 0 00 5555 7 7 333 0 7 7 22222222222 22 3 7 7 8888888888 22222222 7 777 7 2 22 7 2 7 22 7 22 7 22 3 7 7 5 000 888888888888888888 3 7 5 3 55 777 000 99 33 222222 00 00 00 7 3 7 7 5 0 6 00 7 0 8 444 0 00 88 333333 7 2 00 7 7 3 88 2 33333333333 7 7 99 99 7 7 22 2 0 777777777777 7 7 2222222222 777777777 7 99 44 4444444 66 55555555 0000 88888888888 2 888 0 7 7 7 777777777777 000 3333 99 7 4 777777777 0000 2 2 88888 88 2222222222 0 7 7 22 22 0 0 0 8 8 00 0 7 7 3 22 7 7 7 7 5 99 0 888 0 4 7777777777 9 8 6 99 7 4 99 7 7 7 7 7 0 0 888 9 7 1 44 7 0000 2 0 99 888 0 11 11 0 6666 000 000000000 7777 7 7 7 7777777777 7 99 1111111111111111111111111111111111111111111111111111111111111111 1 999 6 7
consensus : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-TA----C--A--AAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
Reference ( family-401 ) : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-TA----C--A--AAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
gi|1 : ATGTTATGTTTGTTGCTT----AA-GTTCTT-TTGGTAGTT-TC-GATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAA----CTG-ACTGTACAAGACA-AACATTTA---TAA--TCACAAAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTTAACATGTTTGATT----CAGAGTCAAA-CAG--TAATAA-AA-CAGA-CACTGTAA-CAAAAG-C-TGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TGAAATA-CGAGTG--GTGG-GGAATTTTG-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTC-GACAA-ATG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAG---AAA------GGGGGGGGG--GTA--AGCAA--GAGACCTAACACTAGC-AGA-TATAATAAAACT-AATG-AACAAAAAGAGCAACTACTAATTCTA-GTTAAAGTGCACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGCTGAGGAC-AAAACGTGAACACATAGA-CAAAAATG--CAATACAGAA---A-------AT-GGC-ATCCA--CATTTAC---AAAATCGCA-TAT-CGAACGTAAAATAATATATTTGTGTAACTTAACAGAC-------------TTTGCACGCGATTTGGTTATGACAATGAAAACC-ATTAACATGGAATAGC-GTTATCTAGAAATTGTAATTTATCTAGAAATTGTAATTTTGCCCGC-TTTACA--AAGAAACTATAAAAATTTTATACAAAAGT-AA-ATGATTTG-AACGAATATC-TAAAATTCTCAAAGTTTAGAA-AT-AA-TACGTTCCTATGC-AATAAA---TTG--TAAAACAG--AAAAACATGAATATAAAGAG---C-TACAGTGGAAAATT--G-ATACTAAAAAGTAAA-T--------------------A--AAAGT-TCTTTAACCTGAAA--TCAGGACAGGA--ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGACCCGGACAATTCA--AGC-TAGC-GTCTCCTG-TTTA-GCCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACTCAATTTACTGTGGGAA--ATTAC-TTA-C-ACGCGGACAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTATCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTTATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGATT--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACCT-CG-CGACA-AAG----------TATAT-T--AACAC--------------------ATATGCCCA--TG----------ACAAAG-A-ATAAA-AAT---ATAAAATATGTAGGAAGGAATGCGGCACAT
gi|10 : ------GTT--CATTTTTGATT---ACAGATTCAAAGCAG--TGTTAG----CAGG-CACTGTAT-TAAAAG-------TG--------------AGACAAT--TAG------CTATATAGT-CAGGCAGACAA-TTGATTAC-ATTGTTAAATAAATAAATA--------ATATCTG-TATAATGAGTG--ATGGCGGAATTTTACACATAA--ATGGGGGAAAATAACCAATTGATAGAAAATTTGGACTTTGGCT-ATGAATGATTGTGTA-TTCGAGCAAGATGGAGTTGTTTGGAACAATTAAGATTTTATTG-A-AC-A-ATAAGA---GGGACTT---CTGGTTAC--Tt
gi|11 : g--TGA--TTTT-TCGGA-A--T---AAGAAAAAC---CGTGAAAAA--------AAGTGC-A---CAGAATAACT-CGACA-A-G----------TATAT-C--GGCAA--------------------GTGTG-CCA--CG----------ACAAAG-AGAT-A--------ATAAAATA---------GAATGCGG-GCA
gi|12 : tcTGTTAT-TTAATTGC------GA-GTTCTTGTTTGTAGTTTGTTGGTGTTGATTGTGGA-TCTGAAAATCAGGACAGGAGACGGAATTGTAATTT--CAGT--GACTTT-ATTGTTTGACGTCCACAGG-AGAA----------------AAGACATAACATTTATTTTAA--TCACAGAAATAAT-ACCACCAATGCCTCTGTAAAGGTTTG-AG-CA-TGCAGGTGAGCACAAATA-T-AATTAGCATG-TG----CAT-GACACCA-Tccagttttggcaattaaatgtccttgattacattaattcggaaaaattttgttgtttttttttaaacttaaaaattgtacatggacgtgaataaatataaaatgtaccgaaagttattagaattataagattgc
gi|13 : ATTCTACGTTAAAGTATACACGTCCTAACTCGTGAAGTCA--ATAG--TA-ATA-------G-TCAAG------------GTGTGAACAGAGAGACCAAAAATAA-C--TGCAGAAAATA-------AT-GTT-ATCTG--CATTTACAAAAAAATCGCA-CAT-TGG
gi|14 : -TT-ATTACTTGACGTC--CA-------------------------GACA-AAC--------TAA--T----GAAA------CCAACAATGTCTCTGTAAAGGTTTG-AATCA-TGC-GTTG-GCACA---A-TAAACTA-GATG-CG----CATGGACACCA-TTAAAACAATA------ATT-A
gi|15 : t-AATAAAAAGTCG--AAAAATAG--AAAAA------TATAAAGAG---CGTGC--TGAAAAATT--G-ATACT-AAAAGT--A-T-A-TTAAAAAGTA----C------ATGT-TTTTT-ACCTTAAG--TTAGGACAGG
gi|16 : ga-----AA-GATTTT-TTG----TT-GT-GATGTTGAG-GTGGA-TCTGAAA-TCAGGACAAGAGACGGAATTGTAAATT--C-GT--GAC-T
gi|17 : gtataaatgtggacatgtatcacaCACGGGATTTAGTTATGACAATGAAAACCGGTGAACATGGAATAGC-ATTATCTTGAAATTGTAATT----------TTG---------CCGC-TTTAC----AGAAATTATAA------CATAC-AAAGT-Acttatgtac
gi|18 : TTTTTT-TA-CAAA-TTAC-TCTAAAACCGTCTGCTTCATTGA-TT-TATGTTACGC--TAACTA-T--TGG--TTTTCTC--A-T--TTCAAAG
gi|19 : ATGTT---TTTGTTG-T-----CA-GTTCTT-TTTGTAGTT-GT-GATGTTGAT-GT-GAATCTGAAA-TCAGGACAGGAGACAAACTGGCGAATgaggggggggggggg
gi|2 : gtgATTAA-AAACAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACA------------------T--TACAGGCAGGCAG-T-GAT----------------------A--------ATCT-TG-A-TA-CGAGTG--GTGG-GGAATTTTA-ACAGAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCA-ATGAAGGA-------------------AG-----------------TCAGA-CTCATTTTACACAA--TAAG------GACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTGTTATCAA--GAGA-CTA-CACTAGC-AGA-TATAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTGATAT-A--ATAG-TTACATAT-C----G-TCAAGATGAGGAC-ATCGCGTGAACACATAGA-CGAAAATGA-CAATACAGAA---A-------AT-GGC----TA--CATTTAC--AAAAATCGAA-TAT-CGGACATAAAATAATGTATT--TGTAACTTAACACACTTTGTTTCTTCATTTTGCACAGGATTTAGTTACGACAATGAAAACCGATTATTATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAAC-----TATA--AACAT-A----GATCTA-CA-AAGTA-------------AAAG--AAAAACATGAA-TAGG--CCTATAC-AG-AGA---GCG--T--AGTGG--AAA---ATTGAT-------G---C------TAAAAAGT------------AAAATA-----A-GTAAAAA-TA----C--GTTAAACT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGCTTAGC-GTCTCCTG-TTTAGGTCATTGAGTTAAT--CTTGTTGATTGTAA---TGTGCG-ATAAGAG---TATT--------T--TGTAATTGAAATTAAAACAACACAATGTACTGTGTGAAACATTACTTTA-TAACGCGGTATTAC-AGG-TAAATGACA-TA-TG-G-G-GAAAATTTAAGCTTTCT-TAACAAATTTAT-ATAAAGGATGTCGGCTTT--------------GACAC--TA---A-TAATGAGTTTTTTTCAGA-TTATTCAGAGAC-AAA---CATCATAAAGGGAAAGGGGGGGGGG---CAGGCTA-CT-CAACA-AAGA---------TATAT-T--AACAC--------------------ATTAGTCTACCTGGGATATGTGTACAAAA-A-AT-AATGATTTAAGAAAGTATATA
gi|20 : AGGAAGN--ATTT-------T--TGTAATTGACATTAAAACAGCACAATT----------------AC-TTA-TAACGCGGAGGGAA-AGG-TAAATGATA-TA-AG-A-G-GAA---tctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|21 : g-AA-CAT-GC-GGTG-GCACA---A-T-AATTA-TATG-TG----CGTGGACACCA-TTAATACAATA------GTT-ACATGTTTGATT---ACAGATTCAA
gi|22 : aCTA--CATTTAC--AAAAATCGCA-TAC-TGGACGTAAAATAATGAATT--TGTAACT-------CTTTTTTTTTT--TTTT
gi|23 : ggctaaACTT---CCGGTTAC--CAAAGGCGAAA------GGGGGAAGGATGTA--AGCAAATGAGA--TAACACTAGCGAAA-TTTAA-AAAt
gi|24 : AT-TT-ATTGCTTGACGTC--CAGG-GGAAAAGTGTTG-ACTGTTCAAGACA-ATCA-TAA---TAA--ATACAGg
gi|25 : AGA-C-AACGCTTGC-AAAATCTACTAAAAGT-AATGAAACGGAA--AGCAACTACAAATTCTA-Gg
gi|26 : T-TTTGTTGCC-----AAAGTTCTT-TTGGTAGTT-GT-CATG
gi|27 : gggattgtACCAGCAATGCCTCTGTAAAGGTTTGAAA-CAT
gi|28 : -TT-GAAA-GACAC--TA---A-T--TGA--TTTTCTCAGA-C--TTgt
gi|3 : at-GAT-TTGAG-GTGTATCTTGAAA-TCAGGACAGGAGACGGAATTGTAAATTTCC-GTTGGAC-TT-ATTACTTGACGTC--CAGGGAGAAAA---CTGGATCGTACAAGACA-AACATTTA---TAA--TCACAGA--TAATT-CCAACAATGTTTCTGTAAAAGTT-G-AA-CAT-GC-GGTG--CACA-----T-A--TA-CATG-TG----C-TGGACACCATTTAAAAC-ATA------GTT-ACATGTTTGATT---ACAGATTCAAC-CAGTATATTAA-AA-AAGACCACTGTAACCAAAAGCCATGTGTGCAAGGACACCTATTAAACAATGTTAAAGA-TACTACAT--T-CAGGCAGGCAGCT-GATT---AT-----AATAAATGAATA--------ATCT-TG--ATA-CG-GTGTTGGGG-GGAA-TTTA-ACATAAGGGGGGGG-AAATTAACCAATTGATAG-AAATTCG--CTTT-GC--ATGAAGAG--GC-TATTTCGGACAA-TGG-----------------ACAGACCTCATTT-ACACAATGTAAGAAGCAGGACTT---CCGGTTAC--TTAAGA-AAA-----------GGGGG--GTA--AGCAAT-GAGA-CTACAATTAGC-AGA-T-TAATAAAACTAAATG-AACAAAA--G--AACTACTAATTC-A-GTTAAAGTGCACAAATACT-A--AGTAATAT-A--ATAGTTTAC-TAT-T----GTTCAAGATGA-GACAAAAATGTGAACAC-TAG---AGAAATGG-GCATACAGAA---A-------ATGGGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGAACGTAAAA-A----------------TAACAAAC--TG------------GCACGGGA-TTAGTTACGACAATG-AAGCCGATTAACAT-GAATAGCAGTTATCTAGAAA-TGTTATT----------TTG---------CCGC-TTTACACGAAG----TATAA------TATA-----------------TG-AACGAATATC-T-AAATTCTCA---TTTAGAA-AT-AATTACGTTCCTATGCAAATAAA---TTG--TAAAACAG--AAAAACA-GAATATAAAGAG---CG-ACAGTGGAAAATT--GCCTACTAGAAAGTAAA-TAA-GTAAAAA-TAACATT--A--AAAGT-TATTT--CCTGAAAATTCAGGACAGGAGAACGGAATTGTTAAATCGTGACTTTATTACTTGACGGATCCAGGGAGAAAAACTGA-CCGGAC-ATTCAAGAGC-TAGCGGTCTCCTGTTTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA----------TGTAATTGAAATT-AAACAACTCAA-TTAC-GT-GGAA--ATTAC-TTATTAACGCGGAC-GAC-AGGCTAAA-------A-TG-G-G-ACA---TCACATTGT
gi|4 : gtgatgttgaggtggagatgtagaatctggtggatgttgagagtg-TTTGTTGCTTAATTAG-TTTCTT-TTGGTAGTT-GT-CATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TTTATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAACACA-AGCATTTA---TAAGATCACAGAAATAATA-CCAAC---GTCTCTGTAAAGGTTTG-AAACAT-GC-GGTG-GCACA---AAT-AATTA-CATG-TGACTGCGTGGACACCA-TAAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACGT--TACAGGCAGGCAG-T-GATTATAAT-----ATTAAATGAATA--------ATCT-TG-A-TA-CGAGTG--GTGT-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAAGATTGC-TA-TTCGGACAA-AAGG----------------TCAGA-CTCATTA-AAACAA--TAAGA---AGGGCTTGAACCGTTTAC--TAAAAA-AAAAAAAAAGGGGGGGGGG--GTA--AGCAA--GATA-CTA-CACTAGC-AGA-TCTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTGATAT-ATAACAG-TTACATAT-TCGTTG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GACTATCTATACATTTAC--AAAAATCGCA-TAT-CGAACGTAAAATAATATATT--TGTAACTTAACAGACTTTGCTTTTTCATTTTGCACGGGATTTAGTTACGACATTGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGT-TTTACA--AAGAAAGTATAA------TATAC-AAAGTAAA-ATGATTTGTAA-GAATATC-TAAAATTCT-AAAGTTAAGAA-AT-AA-TATG------------TAAA---TCG--CATAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAATTT--G-ATACTAAAAAGTAAA-TAA-GTAAAAA-TA----CGTA--AAACT-TCTTT-ACCTGAAA--TCAGGACA-GAG-AGGGAATTGTAAATTCGTGACTTTTTTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGC-TAGC-ATCTCCTG-TTTT-GTCACTGAGTTAAT--CTTGTCAA-TGTAA---TGTGCG-AAAAGAAGC-TGTTA-------TAAGGTAATTGAAATTAAAACAACACAATTTACTGTGataaaacgatt
gi|5 : atgTACATATGT----G-TCAAGATGAG-AC-AAAGCATGAACACGTAGAACAAAAATGAACAATGCGGAA---ATAGCCTTAC-GGT-ATCTA--CATTTA---AAAAATCGCACTATGTGGACGTAAAATAATGTATT--TGTA---TGACAGACTTTTGTTTTTCATTTTGCACGGGATATTG-TACGACAATGAAA--CGATAAACATGCAATAGC-ATTAT-TAGAAATTGTAA-A----------TTG---------TTGCGTTTACA--AAGAAACTA-AA------CATAC-AAAGT-AATATAGTT------GATTTTCGTAAG------AAAGAAAAGGA-AT-AA-TA-------A----AATAAA---CAGTTTCAGACAATTAAGAACATGAATAAAAAGt
gi|5 : acta--AAGAA--CATGA-------ATAA-AAAGT-AA-ATG-TTTG-AA-GAATATT-GAAATTTCTCAA-GTTTA----------------CTTATGC-AATAAA---TCG--CAAAACAG--AAAAACATGAATATAAAAAGAGGCGTA--GTGAAAAATTTGG-ATACTAAAA-GTAAAAT-AAGTAAAA--TA----CTAA--AAACTGTCTTT-AC-TGAAT--TCAGGACAGAAA-A-----------------GACT--AT-ACTTGAGT--TCCA-GGAA-AAAACTGA-CCAAGCGATTCA--AGC-TAG--------TG-TTTA-TGCATTGAGTTAAT---TTGTCAA-TGTAA---TG-GTGAAAAAGAAGCTTATTA-------T--TATAATT-AAATTAAAACAACACAA-TTACT-TTGGAA--ATTAC-TTATTAACACGGAGATAT--GG-CAAATGACA-TACTG-GAG-AAG---TTAAGTT-TCT-TAACAAA-TTAT-ACT-AAGATGTCAGCTTCATTGA-C-----------C--TA---AGT--TGA--TTTTCTCAGA----TTCAGAGACAAAA---TGCCAAAAA---------GGGGGAA---GAGACTA-ATGCAACACAAGTACAGTTAGTTATAT-T--AACAC--------------------ATATGTCCA--TG----------GAAAGA-A-AT-AA-AA----ATAAAATGTGTAGGAAGtaaatgtttgaagaatattgaaatttctcaagtttacttatgcaataaatcgcaaaacagaaaaacatgaatataaaaagaggcgtagtgaaaaatttggatactaaaagtaaaataagtaaaatactaaaaactgtctttactgaattcaggacagaaaagactatacttgagttccaggaaaaaactgaccaagcgattcaagctagtgtttatgcattgagttaatttgtcaatgtaatggtgaaaaagaagcttattattataattaaattaaaacaacacaattactttggaaattacttattaacacggagatatggcaaatgacatactggagaagttaagtttcttaacaaattatactaagatgtcagcttcattgacctaagttgattttctcagattcagagacaaaatgccaaaaagggggaagagactaatgcaacacaagtacagttagttatattaacacatatgtccatggaaagaaataaaaataaaatgtgtaggaagattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|6 : actatacatatgtgtcaagatgagacaaagcatgaacacgtagaacaaaaatgaacaatgcggaaatagccttacggtatctacatttaaaaaatcgcactatgtggacgtaaaataatgtatttgtatgacagacttttgtttttcattttgcacgggatattgtacgacaatgaaacgataaacatgcaatagcattattagaaattgtaaattgttgcgtttacaaagaaactaaacatacaaagtaatatagttgattttcgtaagaaagaaaaggaataataaaataaacagtttcagacaattG-AAAACTGG-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GGAAATGA-TTAATTTCTTGTCGA-TGTAAAATTCTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGACATTAAAACAACACAATTTACTTTTGAAA--ATTAC-TTA-TAACGCGGAGAAAA-AGG-CAAATGACA-GA-AGAG-G-AAA---TTAAGTTTTCT-TAGCAGA-TTAC-ACTACAGATGTCGGCTTCAGTGATTT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---TGCCAAAAAGGAAGGG-GGGGGGGAGGTCAGACTA-CT-CGACC-AAG----------TA----T--AACAT--------------------GTATG--------------------AA-----------------ATAAAATATGCTCGAAGGAATGattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|7 : GTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTAAGTATTAT--TGTAATTGAAATTAAAACAACACA-TTTACT-TGGGAA--ATTAC-T-A-TAACGCGGACAGACCAGG-TAAATGGCAATA-TG-G-GGAAA---TTAAGTTATCTATAACAA--TTATTATTAAAGATGTCGCTTTAATTGA-TTTGAAG-GACACACTA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGAAAAAAAACCGCCAAAAA--------AGCGGGGA---CAGACTA-CT-CGACA-AAG----------TATATATTAAACAC--------------------ATATGTCCA--TG----------ACAAAG----------AT---ATGAA------AGGA---AATGCGACGCATttaaacgtcctttaagtgaactggtttttgttctcaaaaattccaaatgttgttacagtttctatttatcatctaaaaacttacgaaattgtgtgggaacatggacagaatatagaaaatatcggaaagttctaaaattaaagaaattgtcaaatggtgattgaatgtgcctata
gi|8 : GTTAAT--CTTATCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------C--TGTAATTGAAATTAAAACAACACAATTTATTcgtttaagtaaactagtctttgttctcaaaattccaaatgttgttacagtttctaatcatctaaaactcttcgaaattgcgtgggaacatgaaacaaaatatagaatatgtccaaagtttactaaaattaaagaaattgtaaaatggtgaaatgtgcctatatg
gi|8 : -G-AAA---TTAAAACAAC----ACAAT-TTAT-TNNNNAGAGGTCGGCTTCATTGA-TTTGAAG-GACAG--T----------GA--TTTTCTCTTA-T--TTCATAGACAAAA---CGTCAAAAG--------GGAGGGGG----GGACTA-CT-TGACA-AAG----------TATAT-T--AACACATACATACTAACACATACATGTATGTCCA--TG----------GCAAAGAA-AT-AA-AAT---ATAAAACATnnnnagaggtcggcttcattgatttgaaggacagtgattttctcttatttcatagacaaaacgtcaaaagggagggggggactacttgacaaagtatattaacacatacatactaacacatacatgtatgtccatggcaaagaaataaaatataaaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
gi|9 : gttaatcttatcgatgtaatgtgcgaaaagaagctattactgtaattTG-CATGGTG----CATGGACACCA-TTAAAACAATACCGGTAGTT-ACATGTTTGAGTGTAACA-ATTCAAA-CAG--TATTAACAA-CAGA-CACTGTAA-CAAAAA-AATGTGCGTAAGGACACCT-TTA--------------TTACTACAT--TACAGACAGACAG-T-GATTC---T-----AATAAATGAATACCCCGGTAATCT-TG-A----------------------TTTA-ACATAA--ATGGGG-AATTTAACCGAATGATAGAAAATTCG--CTTT-GCTAATGAAGGATTGT-TA-TTTGGACAA-ATG-------------------A----TTGTTT-ACAC-A-ATAAGA---GGGACTT---CTGGCTACTATAAACA-AAAA------CGAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
Alignments
lowQualScore : 111 222222 1 11 11 333333333333333 111 22 1 22 11111 1111 111111 111 11 111 33333333333 3333333333 22222222 222 11 555555555555555555 1 11 111 111 111111 11 11 11 1 1 11 222 11 111111 1 11 22222222222 222222222222 2222222222 222222222 2222222 11 11111111 1111 11111111111 333333333333 111 111111111 1111 22222 4444444444 11 11 1111111111 1 1111 1111 111 444444444 1111 3333333333 4444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 222 777777 6 6 6 5 6 3 1 6 11 8 11 5 6 99 6 111111111111111 6 3 111 99 1 0 0 22 5 1 00 6 6 77777 6 5 5 2222 4 5 666666 5 111 8 11 7777 6 6 222 1 6 1 11111111111 99 7 6 6 7777777777 44444444 6 555 6 3 99 6 3 6 99 6 99 6 00 7 6 6 2 777 666666666666666666 3 6 2 7 66 111 000 77 88 999999 11 11 99 6 1 6 6 7 8 0 11 6 1 0 666 8 11 88 888888 6 3 55 6 1 3 00 3 44444444444 6 6 77 77 5 5 99 3 1 000000000000 1 6 9999999999 666666666 6 77 44 4444444 33 00000000 4444 00000000000 3 333 1 6 6 6 111111111111 000 8888 77 0 1 888888888 0000 3 3 00000 99 0000000000 1 6 6 99 11 5 1 1 0 0 11 8 6 6 6 99 6 6 6 6 1 77 5 888 5 4 8888888888 1 8 5 77 5 1 44 5 5 5 5 5 5 5 888 5 5 0 77 5 1111 0 5 66 888 5 66 66 1 1111 000 111111111 0000 5 5 5 0000000000 5 77 7777777777777777777777777777777777777777777777777777777777777777 0 333 5 6
lowQualScore : ... ...... . . . . . . . . .. . .. . . .. . ............... . . ... .. . . . .. . . .. . . ..... . . . .... . . ...... . ... . .. .... . . ... . . . ........... .. . . . .......... ........ . ... . . .. . . . .. . .. . .. . . . . ... .................. . . . . .. ... ... .. .. ...... .. .. .. . . . . . . . .. . . . ... . .. .. ...... . . .. . . . .. . ........... . . .. .. . . .. . . ............ . . .......... ......... . .. .. ....... .. ........ .... ........... . ... . . . . ............ ... .... .. . . ......... .... . . ..... .. .......... . . . .. .. . . . . . .. . . . . .. . . . . . .. . ... . . .......... . . . .. . . .. . . . . . . . ... . . . .. . .... . . .. ... . .. .. . .... ... ......... .... . . . .......... . .. ................................................................ . ... . .
lowQualScore : 333 111111 7 7 7 7 7 7 7 7 00 0 00 7 7 22 7 333333333333333 7 2 777 22 0 8 8 11 7 4 55 7 7 55555 7 7 7 1111 0 7 444444 7 777 0 00 5555 7 7 333 0 7 7 22222222222 22 3 7 7 8888888888 22222222 7 777 7 2 22 7 2 7 22 7 22 7 22 3 7 7 5 000 888888888888888888 3 7 5 3 55 777 000 99 33 222222 00 00 00 7 3 7 7 5 0 6 00 7 0 8 444 0 00 88 333333 7 2 00 7 7 3 88 2 33333333333 7 7 99 99 7 7 22 2 0 777777777777 7 7 2222222222 777777777 7 99 44 4444444 66 55555555 0000 88888888888 2 888 0 7 7 7 777777777777 000 3333 99 7 4 777777777 0000 2 2 88888 88 2222222222 0 7 7 22 22 0 0 0 8 8 00 0 7 7 3 22 7 7 7 7 5 99 0 888 0 4 7777777777 9 8 6 99 7 4 99 7 7 7 7 7 0 0 888 9 7 1 44 7 0000 2 0 99 888 0 11 11 0 6666 000 000000000 7777 7 7 7 7777777777 7 99 1111111111111111111111111111111111111111111111111111111111111111 1 999 6 7
consensus : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-TA----C--A--AAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
Reference ( family-401 ) : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-TA----C--A--AAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
gi|1 : ATGTTATGTTTGTTGCTT----AA-GTTCTT-TTGGTAGTT-TC-GATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAA----CTG-ACTGTACAAGACA-AACATTTA---TAA--TCACAAAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTTAACATGTTTGATT----CAGAGTCAAA-CAG--TAATAA-AA-CAGA-CACTGTAA-CAAAAG-C-TGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TGAAATA-CGAGTG--GTGG-GGAATTTTG-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTC-GACAA-ATG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAG---AAA------GGGGGGGGG--GTA--AGCAA--GAGACCTAACACTAGC-AGA-TATAATAAAACT-AATG-AACAAAAAGAGCAACTACTAATTCTA-GTTAAAGTGCACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGCTGAGGAC-AAAACGTGAACACATAGA-CAAAAATG--CAATACAGAA---A-------AT-GGC-ATCCA--CATTTAC---AAAATCGCA-TAT-CGAACGTAAAATAATATATTTGTGTAACTTAACAGAC-------------TTTGCACGCGATTTGGTTATGACAATGAAAACC-ATTAACATGGAATAGC-GTTATCTAGAAATTGTAATTTATCTAGAAATTGTAATTTTGCCCGC-TTTACA--AAGAAACTATAAAAATTTTATACAAAAGT-AA-ATGATTTG-AACGAATATC-TAAAATTCTCAAAGTTTAGAA-AT-AA-TACGTTCCTATGC-AATAAA---TTG--TAAAACAG--AAAAACATGAATATAAAGAG---C-TACAGTGGAAAATT--G-ATACTAAAAAGTAAA-T--------------------A--AAAGT-TCTTTAACCTGAAA--TCAGGACAGGA--ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGACCCGGACAATTCA--AGC-TAGC-GTCTCCTG-TTTA-GCCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACTCAATTTACTGTGGGAA--ATTAC-TTA-C-ACGCGGACAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTATCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTTATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGATT--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACCT-CG-CGACA-AAG----------TATAT-T--AACAC--------------------ATATGCCCA--TG----------ACAAAG-A-ATAAA-AAT---ATAAAATATGTAGGAAGGAATGCGGCACAT
gi|10 : ------GTT--CATTTTTGATT---ACAGATTCAAAGCAG--TGTTAG----CAGG-CACTGTAT-TAAAAG-------TG--------------AGACAAT--TAG------CTATATAGT-CAGGCAGACAA-TTGATTAC-ATTGTTAAATAAATAAATA--------ATATCTG-TATAATGAGTG--ATGGCGGAATTTTACACATAA--ATGGGGGAAAATAACCAATTGATAGAAAATTTGGACTTTGGCT-ATGAATGATTGTGTA-TTCGAGCAAGATGGAGTTGTTTGGAACAATTAAGATTTTATTG-A-AC-A-ATAAGA---GGGACTT---CTGGTTAC--Tt
gi|11 : g--TGA--TTTT-TCGGA-A--T---AAGAAAAAC---CGTGAAAAA--------AAGTGC-A---CAGAATAACT-CGACA-A-G----------TATAT-C--GGCAA--------------------GTGTG-CCA--CG----------ACAAAG-AGAT-A--------ATAAAATA---------GAATGCGG-GCA
gi|12 : tcTGTTAT-TTAATTGC------GA-GTTCTTGTTTGTAGTTTGTTGGTGTTGATTGTGGA-TCTGAAAATCAGGACAGGAGACGGAATTGTAATTT--CAGT--GACTTT-ATTGTTTGACGTCCACAGG-AGAA----------------AAGACATAACATTTATTTTAA--TCACAGAAATAAT-ACCACCAATGCCTCTGTAAAGGTTTG-AG-CA-TGCAGGTGAGCACAAATA-T-AATTAGCATG-TG----CAT-GACACCA-Tccagttttggcaattaaatgtccttgattacattaattcggaaaaattttgttgtttttttttaaacttaaaaattgtacatggacgtgaataaatataaaatgtaccgaaagttattagaattataagattgc
gi|13 : ATTCTACGTTAAAGTATACACGTCCTAACTCGTGAAGTCA--ATAG--TA-ATA-------G-TCAAG------------GTGTGAACAGAGAGACCAAAAATAA-C--TGCAGAAAATA-------AT-GTT-ATCTG--CATTTACAAAAAAATCGCA-CAT-TGG
gi|14 : -TT-ATTACTTGACGTC--CA-------------------------GACA-AAC--------TAA--T----GAAA------CCAACAATGTCTCTGTAAAGGTTTG-AATCA-TGC-GTTG-GCACA---A-TAAACTA-GATG-CG----CATGGACACCA-TTAAAACAATA------ATT-A
gi|15 : t-AATAAAAAGTCG--AAAAATAG--AAAAA------TATAAAGAG---CGTGC--TGAAAAATT--G-ATACT-AAAAGT--A-T-A-TTAAAAAGTA----C------ATGT-TTTTT-ACCTTAAG--TTAGGACAGG
gi|16 : ga-----AA-GATTTT-TTG----TT-GT-GATGTTGAG-GTGGA-TCTGAAA-TCAGGACAAGAGACGGAATTGTAAATT--C-GT--GAC-T
gi|17 : gtataaatgtggacatgtatcacaCACGGGATTTAGTTATGACAATGAAAACCGGTGAACATGGAATAGC-ATTATCTTGAAATTGTAATT----------TTG---------CCGC-TTTAC----AGAAATTATAA------CATAC-AAAGT-Acttatgtac
gi|18 : TTTTTT-TA-CAAA-TTAC-TCTAAAACCGTCTGCTTCATTGA-TT-TATGTTACGC--TAACTA-T--TGG--TTTTCTC--A-T--TTCAAAG
gi|19 : ATGTT---TTTGTTG-T-----CA-GTTCTT-TTTGTAGTT-GT-GATGTTGAT-GT-GAATCTGAAA-TCAGGACAGGAGACAAACTGGCGAATgaggggggggggggg
gi|2 : gtgATTAA-AAACAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACA------------------T--TACAGGCAGGCAG-T-GAT----------------------A--------ATCT-TG-A-TA-CGAGTG--GTGG-GGAATTTTA-ACAGAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCA-ATGAAGGA-------------------AG-----------------TCAGA-CTCATTTTACACAA--TAAG------GACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTGTTATCAA--GAGA-CTA-CACTAGC-AGA-TATAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTGATAT-A--ATAG-TTACATAT-C----G-TCAAGATGAGGAC-ATCGCGTGAACACATAGA-CGAAAATGA-CAATACAGAA---A-------AT-GGC----TA--CATTTAC--AAAAATCGAA-TAT-CGGACATAAAATAATGTATT--TGTAACTTAACACACTTTGTTTCTTCATTTTGCACAGGATTTAGTTACGACAATGAAAACCGATTATTATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAAC-----TATA--AACAT-A----GATCTA-CA-AAGTA-------------AAAG--AAAAACATGAA-TAGG--CCTATAC-AG-AGA---GCG--T--AGTGG--AAA---ATTGAT-------G---C------TAAAAAGT------------AAAATA-----A-GTAAAAA-TA----C--GTTAAACT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGCTTAGC-GTCTCCTG-TTTAGGTCATTGAGTTAAT--CTTGTTGATTGTAA---TGTGCG-ATAAGAG---TATT--------T--TGTAATTGAAATTAAAACAACACAATGTACTGTGTGAAACATTACTTTA-TAACGCGGTATTAC-AGG-TAAATGACA-TA-TG-G-G-GAAAATTTAAGCTTTCT-TAACAAATTTAT-ATAAAGGATGTCGGCTTT--------------GACAC--TA---A-TAATGAGTTTTTTTCAGA-TTATTCAGAGAC-AAA---CATCATAAAGGGAAAGGGGGGGGGG---CAGGCTA-CT-CAACA-AAGA---------TATAT-T--AACAC--------------------ATTAGTCTACCTGGGATATGTGTACAAAA-A-AT-AATGATTTAAGAAAGTATATA
gi|20 : AGGAAGN--ATTT-------T--TGTAATTGACATTAAAACAGCACAATT----------------AC-TTA-TAACGCGGAGGGAA-AGG-TAAATGATA-TA-AG-A-G-GAA---tctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|21 : g-AA-CAT-GC-GGTG-GCACA---A-T-AATTA-TATG-TG----CGTGGACACCA-TTAATACAATA------GTT-ACATGTTTGATT---ACAGATTCAA
gi|22 : aCTA--CATTTAC--AAAAATCGCA-TAC-TGGACGTAAAATAATGAATT--TGTAACT-------CTTTTTTTTTT--TTTT
gi|23 : ggctaaACTT---CCGGTTAC--CAAAGGCGAAA------GGGGGAAGGATGTA--AGCAAATGAGA--TAACACTAGCGAAA-TTTAA-AAAt
gi|24 : AT-TT-ATTGCTTGACGTC--CAGG-GGAAAAGTGTTG-ACTGTTCAAGACA-ATCA-TAA---TAA--ATACAGg
gi|25 : AGA-C-AACGCTTGC-AAAATCTACTAAAAGT-AATGAAACGGAA--AGCAACTACAAATTCTA-Gg
gi|26 : T-TTTGTTGCC-----AAAGTTCTT-TTGGTAGTT-GT-CATG
gi|27 : gggattgtACCAGCAATGCCTCTGTAAAGGTTTGAAA-CAT
gi|28 : -TT-GAAA-GACAC--TA---A-T--TGA--TTTTCTCAGA-C--TTgt
gi|3 : at-GAT-TTGAG-GTGTATCTTGAAA-TCAGGACAGGAGACGGAATTGTAAATTTCC-GTTGGAC-TT-ATTACTTGACGTC--CAGGGAGAAAA---CTGGATCGTACAAGACA-AACATTTA---TAA--TCACAGA--TAATT-CCAACAATGTTTCTGTAAAAGTT-G-AA-CAT-GC-GGTG--CACA-----T-A--TA-CATG-TG----C-TGGACACCATTTAAAAC-ATA------GTT-ACATGTTTGATT---ACAGATTCAAC-CAGTATATTAA-AA-AAGACCACTGTAACCAAAAGCCATGTGTGCAAGGACACCTATTAAACAATGTTAAAGA-TACTACAT--T-CAGGCAGGCAGCT-GATT---AT-----AATAAATGAATA--------ATCT-TG--ATA-CG-GTGTTGGGG-GGAA-TTTA-ACATAAGGGGGGGG-AAATTAACCAATTGATAG-AAATTCG--CTTT-GC--ATGAAGAG--GC-TATTTCGGACAA-TGG-----------------ACAGACCTCATTT-ACACAATGTAAGAAGCAGGACTT---CCGGTTAC--TTAAGA-AAA-----------GGGGG--GTA--AGCAAT-GAGA-CTACAATTAGC-AGA-T-TAATAAAACTAAATG-AACAAAA--G--AACTACTAATTC-A-GTTAAAGTGCACAAATACT-A--AGTAATAT-A--ATAGTTTAC-TAT-T----GTTCAAGATGA-GACAAAAATGTGAACAC-TAG---AGAAATGG-GCATACAGAA---A-------ATGGGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGAACGTAAAA-A----------------TAACAAAC--TG------------GCACGGGA-TTAGTTACGACAATG-AAGCCGATTAACAT-GAATAGCAGTTATCTAGAAA-TGTTATT----------TTG---------CCGC-TTTACACGAAG----TATAA------TATA-----------------TG-AACGAATATC-T-AAATTCTCA---TTTAGAA-AT-AATTACGTTCCTATGCAAATAAA---TTG--TAAAACAG--AAAAACA-GAATATAAAGAG---CG-ACAGTGGAAAATT--GCCTACTAGAAAGTAAA-TAA-GTAAAAA-TAACATT--A--AAAGT-TATTT--CCTGAAAATTCAGGACAGGAGAACGGAATTGTTAAATCGTGACTTTATTACTTGACGGATCCAGGGAGAAAAACTGA-CCGGAC-ATTCAAGAGC-TAGCGGTCTCCTGTTTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA----------TGTAATTGAAATT-AAACAACTCAA-TTAC-GT-GGAA--ATTAC-TTATTAACGCGGAC-GAC-AGGCTAAA-------A-TG-G-G-ACA---TCACATTGT
gi|4 : gtgatgttgaggtggagatgtagaatctggtggatgttgagagtg-TTTGTTGCTTAATTAG-TTTCTT-TTGGTAGTT-GT-CATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TTTATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAACACA-AGCATTTA---TAAGATCACAGAAATAATA-CCAAC---GTCTCTGTAAAGGTTTG-AAACAT-GC-GGTG-GCACA---AAT-AATTA-CATG-TGACTGCGTGGACACCA-TAAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACGT--TACAGGCAGGCAG-T-GATTATAAT-----ATTAAATGAATA--------ATCT-TG-A-TA-CGAGTG--GTGT-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAAGATTGC-TA-TTCGGACAA-AAGG----------------TCAGA-CTCATTA-AAACAA--TAAGA---AGGGCTTGAACCGTTTAC--TAAAAA-AAAAAAAAAGGGGGGGGGG--GTA--AGCAA--GATA-CTA-CACTAGC-AGA-TCTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACTAA---GTGATAT-ATAACAG-TTACATAT-TCGTTG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GACTATCTATACATTTAC--AAAAATCGCA-TAT-CGAACGTAAAATAATATATT--TGTAACTTAACAGACTTTGCTTTTTCATTTTGCACGGGATTTAGTTACGACATTGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGT-TTTACA--AAGAAAGTATAA------TATAC-AAAGTAAA-ATGATTTGTAA-GAATATC-TAAAATTCT-AAAGTTAAGAA-AT-AA-TATG------------TAAA---TCG--CATAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAATTT--G-ATACTAAAAAGTAAA-TAA-GTAAAAA-TA----CGTA--AAACT-TCTTT-ACCTGAAA--TCAGGACA-GAG-AGGGAATTGTAAATTCGTGACTTTTTTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGC-TAGC-ATCTCCTG-TTTT-GTCACTGAGTTAAT--CTTGTCAA-TGTAA---TGTGCG-AAAAGAAGC-TGTTA-------TAAGGTAATTGAAATTAAAACAACACAATTTACTGTGataaaacgatt
gi|5 : atgTACATATGT----G-TCAAGATGAG-AC-AAAGCATGAACACGTAGAACAAAAATGAACAATGCGGAA---ATAGCCTTAC-GGT-ATCTA--CATTTA---AAAAATCGCACTATGTGGACGTAAAATAATGTATT--TGTA---TGACAGACTTTTGTTTTTCATTTTGCACGGGATATTG-TACGACAATGAAA--CGATAAACATGCAATAGC-ATTAT-TAGAAATTGTAA-A----------TTG---------TTGCGTTTACA--AAGAAACTA-AA------CATAC-AAAGT-AATATAGTT------GATTTTCGTAAG------AAAGAAAAGGA-AT-AA-TA-------A----AATAAA---CAGTTTCAGACAATTAAGAACATGAATAAAAAGt
gi|5 : acta--AAGAA--CATGA-------ATAA-AAAGT-AA-ATG-TTTG-AA-GAATATT-GAAATTTCTCAA-GTTTA----------------CTTATGC-AATAAA---TCG--CAAAACAG--AAAAACATGAATATAAAAAGAGGCGTA--GTGAAAAATTTGG-ATACTAAAA-GTAAAAT-AAGTAAAA--TA----CTAA--AAACTGTCTTT-AC-TGAAT--TCAGGACAGAAA-A-----------------GACT--AT-ACTTGAGT--TCCA-GGAA-AAAACTGA-CCAAGCGATTCA--AGC-TAG--------TG-TTTA-TGCATTGAGTTAAT---TTGTCAA-TGTAA---TG-GTGAAAAAGAAGCTTATTA-------T--TATAATT-AAATTAAAACAACACAA-TTACT-TTGGAA--ATTAC-TTATTAACACGGAGATAT--GG-CAAATGACA-TACTG-GAG-AAG---TTAAGTT-TCT-TAACAAA-TTAT-ACT-AAGATGTCAGCTTCATTGA-C-----------C--TA---AGT--TGA--TTTTCTCAGA----TTCAGAGACAAAA---TGCCAAAAA---------GGGGGAA---GAGACTA-ATGCAACACAAGTACAGTTAGTTATAT-T--AACAC--------------------ATATGTCCA--TG----------GAAAGA-A-AT-AA-AA----ATAAAATGTGTAGGAAGtaaatgtttgaagaatattgaaatttctcaagtttacttatgcaataaatcgcaaaacagaaaaacatgaatataaaaagaggcgtagtgaaaaatttggatactaaaagtaaaataagtaaaatactaaaaactgtctttactgaattcaggacagaaaagactatacttgagttccaggaaaaaactgaccaagcgattcaagctagtgtttatgcattgagttaatttgtcaatgtaatggtgaaaaagaagcttattattataattaaattaaaacaacacaattactttggaaattacttattaacacggagatatggcaaatgacatactggagaagttaagtttcttaacaaattatactaagatgtcagcttcattgacctaagttgattttctcagattcagagacaaaatgccaaaaagggggaagagactaatgcaacacaagtacagttagttatattaacacatatgtccatggaaagaaataaaaataaaatgtgtaggaagattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|6 : actatacatatgtgtcaagatgagacaaagcatgaacacgtagaacaaaaatgaacaatgcggaaatagccttacggtatctacatttaaaaaatcgcactatgtggacgtaaaataatgtatttgtatgacagacttttgtttttcattttgcacgggatattgtacgacaatgaaacgataaacatgcaatagcattattagaaattgtaaattgttgcgtttacaaagaaactaaacatacaaagtaatatagttgattttcgtaagaaagaaaaggaataataaaataaacagtttcagacaattG-AAAACTGG-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GGAAATGA-TTAATTTCTTGTCGA-TGTAAAATTCTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGACATTAAAACAACACAATTTACTTTTGAAA--ATTAC-TTA-TAACGCGGAGAAAA-AGG-CAAATGACA-GA-AGAG-G-AAA---TTAAGTTTTCT-TAGCAGA-TTAC-ACTACAGATGTCGGCTTCAGTGATTT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---TGCCAAAAAGGAAGGG-GGGGGGGAGGTCAGACTA-CT-CGACC-AAG----------TA----T--AACAT--------------------GTATG--------------------AA-----------------ATAAAATATGCTCGAAGGAATGattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|7 : GTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTAAGTATTAT--TGTAATTGAAATTAAAACAACACA-TTTACT-TGGGAA--ATTAC-T-A-TAACGCGGACAGACCAGG-TAAATGGCAATA-TG-G-GGAAA---TTAAGTTATCTATAACAA--TTATTATTAAAGATGTCGCTTTAATTGA-TTTGAAG-GACACACTA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGAAAAAAAACCGCCAAAAA--------AGCGGGGA---CAGACTA-CT-CGACA-AAG----------TATATATTAAACAC--------------------ATATGTCCA--TG----------ACAAAG----------AT---ATGAA------AGGA---AATGCGACGCATttaaacgtcctttaagtgaactggtttttgttctcaaaaattccaaatgttgttacagtttctatttatcatctaaaaacttacgaaattgtgtgggaacatggacagaatatagaaaatatcggaaagttctaaaattaaagaaattgtcaaatggtgattgaatgtgcctata
gi|8 : GTTAAT--CTTATCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------C--TGTAATTGAAATTAAAACAACACAATTTATTcgtttaagtaaactagtctttgttctcaaaattccaaatgttgttacagtttctaatcatctaaaactcttcgaaattgcgtgggaacatgaaacaaaatatagaatatgtccaaagtttactaaaattaaagaaattgtaaaatggtgaaatgtgcctatatg
gi|8 : -G-AAA---TTAAAACAAC----ACAAT-TTAT-TNNNNAGAGGTCGGCTTCATTGA-TTTGAAG-GACAG--T----------GA--TTTTCTCTTA-T--TTCATAGACAAAA---CGTCAAAAG--------GGAGGGGG----GGACTA-CT-TGACA-AAG----------TATAT-T--AACACATACATACTAACACATACATGTATGTCCA--TG----------GCAAAGAA-AT-AA-AAT---ATAAAACATnnnnagaggtcggcttcattgatttgaaggacagtgattttctcttatttcatagacaaaacgtcaaaagggagggggggactacttgacaaagtatattaacacatacatactaacacatacatgtatgtccatggcaaagaaataaaatataaaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
gi|9 : gttaatcttatcgatgtaatgtgcgaaaagaagctattactgtaattTG-CATGGTG----CATGGACACCA-TTAAAACAATACCGGTAGTT-ACATGTTTGAGTGTAACA-ATTCAAA-CAG--TATTAACAA-CAGA-CACTGTAA-CAAAAA-AATGTGCGTAAGGACACCT-TTA--------------TTACTACAT--TACAGACAGACAG-T-GATTC---T-----AATAAATGAATACCCCGGTAATCT-TG-A----------------------TTTA-ACATAA--ATGGGG-AATTTAACCGAATGATAGAAAATTCG--CTTT-GCTAATGAAGGATTGT-TA-TTTGGACAA-ATG-------------------A----TTGTTT-ACAC-A-ATAAGA---GGGACTT---CTGGCTACTATAAACA-AAAA------CGAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
blockSeqs : AT TTAATT A G T T T G A A TC A TG T T CA G AAGTGTTGACTGTT T T TTT GA C A A T T A A AATA A G G ACTG A T CCGGTA . GTA G TA AAA C C CCA C A G ATGTTAAAGAT AG A C T ACATTGTTA CCCCGGTA C TA A A TT C T C GG G GA G TA T G T G GAT GAGTTGTTTGGAACAATT T T C A TG AGC GAA TA GC AAAAAG AT TT AT . A G A A A A . C T CTC C TA TT TCGTT T A GG A A C AA A ATAGCCTT G T TA AA C G . A C TTTGTTTCTTCA A A . . G CG AT CT C AAAATGA AAC GAAATTTCTC A TTT A C G T CGTTCCTATGCA AAG TTTC TT T AGGCGTA TGG A A ATAA AG ACATTA G G . AT GA C A T GA G A . A AG T G T G T TT T AAT A T AGTATTAT T G G AC T T AT C C A C A A G AAT T A AT T TTT T AC ACT G AA GT G TTA AAC GGGAAAGGG GGTC A G C TACAGTTAGT A TA ATACATACTAACACATACATGTATGTCCATGGCAAAGAAATAAAAT TAT A C
blockSeqs : . T . . . . . G T . . . . . . . . AACTGGATCGTA . T . . T T . A T . . AA . . . . A . . . . . . CAA . . CA C . A ATGTTAAAGA . A . . ATAAT . . A . A . . T . . . . . T T . . G TG GT C . C A A . . . A . . . T . A . . T . A . . A A . . T GT . A GG . A A A C AATA . . . . . . . A A TTTGCTTTTTCA A . . . . . AC C C AATATAG TAA TAAATTCTC A TTA G . . . GGCCTATAC . AA . T CGTACA GC A A TAA A CGTT C . . . G C T A . . . . A . . . . . T . . . . . TAA T G G . . T GG . . . . . . . . T . A . TTT . . . . . . A A . GGAAGGGG C . . . A . . ATTAGTCTACCTGGGATATGTGTACAAAAAATAATGATTTA TGT A .
blockSeqs : C . . . . . G A . . . . . . . . AACTGACCGTA . T . . C A . . T . . A . . . . G . . . . . . AA . . CA C . A ATTAG . A . . AT . . A . A . . T . . . . . A T . . G AA T . . A A A . . . A . . . . . C . . C . A . . C . . . T C . A G . A . A A A . . . . . . . A G TTTTGTTTTTCA G . . . . . AG T C AAATG CA TAAAATTCT A AAA G . . . CTTATGC . TA . T CGTGC G A A TAA A CGTA G . . . G G A T . . . . G . . . . . T . . . . . T T G T . . . GA . . . . . . . . G . A . TTT . . . . . . A T . A C . . . . . . ATATGTCCATGGAAAGAAATAAAA TGC .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . C . . . T . . A . . . . G . . . . . . AA . . AA T . A T . . . . CT . . A . . . . . . . . . . T . . . G AT A . . C . . . . . A . . . . . . . . C . . . . A . . . . T . A G . G . G A A . . . . . . . . G TTTTTTTTTT A . . . . . AC T A AGA AA GTAAG . TTT G . . . TG . CA . T CGACA G . . TA A CTAA C . . . A . . . . . . . G . . . . . G . . . . . T T T T . . . GA . . . . . . . . T . A . TT . . . . . . A C . A G . . . . . . GTGTGCCACGACAAAGAGATA . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . . . . . . A . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . A . . . . . . . . . A . . . . . . . . . . . . . . G . A . . . . . . . . . TG . . . . . . . C . . . . . A . . . . A . CA . . C . . . A . C C . . . . . . . . . . . G . . . . . T T . G . . . CA . . . . . . . . A . T . TT . . . . . . A T . G C . . . . . . ATATGTCCATGACAAAGAT .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . T T . . . . . C . . . . . . . . A . . . C . . . . . . A T . . . . . . . . . GTATGAA
blockSeqs : . . . . C . . . . . . . . . . . . . . T T
blockSeqs : . . . . . . .
blockSeqCons : C***** AACTGACCGT***** A* T* CA* ATTAG****** AT******** A** A* ** *** G* ** TTTGNTTTTTCA ********** ********* C****** C* AATGG*** TAAATTCT*** CCTATGC***** TAA** A* CGTA****** G* TT** T***
originalCons : ATGTTAT-TTTGTTGCT-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAA---CTG-ACCGTACAAGACA-AACATTTA---TAA--TCACAGAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAATGTTAAAGATTACTACAT--TACAGGCAGGCAG-T-GATTA--AT-----AATAAATGAATA--------ATCT-TG-AATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA--AGTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGA-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------TATAC-AAAGT-AA-ATGATTTG-AA-GAATATC-TAAAATTCTCAAAGTTNAGAA-AT-AA-TACG--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-T-A-GTAAAAA-TA----C--A--AAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
finalCons : ATGTTAT-TTTGTTGCC-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GAC-TT-ATTACTTGACGTC--CAGG-AGAAAACTGACCGT-----CAAGACA-AACATTTA---TAA--TCACAGAAATAATA-CCAACAATGTCTCTGTAAAGGTTTG-AA-CAT-GC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAGCA-TGTGTGCAAGGACACCT-TTAAACAATTAG------TACTACAT--TACAGGCAGGCAG-T-GATTAT--------AATAAATGAATA--------ATCT-TGA--TA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACTAA---GTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGNTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAAC------ATAC-AAAGTAATGG---TTTG-AA-GAATATCTAAATTCT---AAAGTTNAGAA-AT-AA-TACCTATGC-----AATAAA---TCG--TAAAACAG--AAAAACATGAATATAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAATAA--GTAAAAA-TACGTA------AAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGATT--GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGAT---TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
Alignments
lowQualScore : 111 333333333 1 11 11 1 44444444444444 111 1 11111 1111 111111 111 11 111 77777777777777777 2222222 111 22222222 11 11 555555555555555555 1 11 111 111 111111 11 11 11 1 1 11 111 11 111111 1 22222222222 222222222222 2222222222 222222222 2222222 22222222222222222 111111111111 111 444444444 111 222222222 1111 22222222222222222 11 11 1111111111 1 1111 1111 111 444444444 1111 3333333333 4444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 222 111111111 6 6 5 6 3 1 6 11 8 11 3 99 6 3 88888888888888 6 3 111 99 1 66 6 5 1 5 6 6 77777 6 5 5 2222 4 5 666666 5 111 8 11 7777 6 6 222 1 6 1 77777777777777777 99 7 6 6 6 1111111 111 44444444 6 55 6 3 99 6 3 6 99 6 99 6 00 7 6 6 2 777 666666666666666666 3 6 2 7 66 111 000 77 88 999999 11 11 99 6 1 6 6 7 8 0 11 6 1 8 444 8 11 88 888888 6 3 55 6 1 3 1 6 3 44444444444 6 6 77 77 5 5 99 3 1 000000000000 1 6 9999999999 666666666 6 77 44 0000000 88 5 88888888888888888 999999999999 000 6 6 111111111 88 000 8888 77 0 1 5 111111111 0000 3 77777777777777777 1 6 6 99 11 5 1 1 0 0 11 8 6 6 6 99 6 6 6 6 1 77 5 888 5 4 8888888888 1 8 5 77 5 1 44 5 5 5 5 5 5 5 888 5 5 0 77 5 1111 0 5 66 888 5 66 66 1 1111 000 111111111 0000 5 5 5 0000000000 5 77 7777777777777777777777777777777777777777777777777777777777777777 0 333 5 6
lowQualScore : ... ......... . . . . . . . .. . .. . .. . . .............. . . ... .. . .. . . . . . . ..... . . . .... . . ...... . ... . .. .... . . ... . . . ................. .. . . . . ....... ... ........ . .. . . .. . . . .. . .. . .. . . . . ... .................. . . . . .. ... ... .. .. ...... .. .. .. . . . . . . . .. . . . ... . .. .. ...... . . .. . . . . . . ........... . . .. .. . . .. . . ............ . . .......... ......... . .. .. ....... .. . ................. ............ ... . . ......... .. ... .... .. . . . ......... .... . ................. . . . .. .. . . . . . .. . . . . .. . . . . . .. . ... . . .......... . . . .. . . .. . . . . . . . ... . . . .. . .... . . .. ... . .. .. . .... ... ......... .... . . . .......... . .. ................................................................ . ... . .
lowQualScore : 333 666666666 7 7 7 7 7 7 7 00 0 00 3 22 7 2 55555555555555 7 2 777 22 0 44 7 7 4 7 7 7 55555 7 7 7 1111 0 7 444444 7 777 0 00 5555 7 7 333 0 7 7 33333333333333333 22 3 7 7 7 7777777 777 22222222 7 88 7 2 22 7 2 7 22 7 22 7 22 3 7 7 5 000 888888888888888888 3 7 5 3 55 777 000 99 33 222222 00 00 00 7 3 7 7 5 0 6 00 7 0 0 000 0 00 88 333333 7 2 00 7 7 3 0 7 2 33333333333 7 7 99 99 7 7 22 2 0 888888888888 7 7 2222222222 777777777 7 99 44 4444444 77 7 00000000000000000 333333333333 333 7 7 888888888 22 000 3333 99 7 4 7 333333333 0000 2 55555555555555555 0 7 7 22 22 0 0 0 8 8 00 0 7 7 3 22 7 7 7 7 5 99 0 888 0 4 7777777777 9 8 6 99 7 4 99 7 7 7 7 7 0 0 888 9 7 1 44 7 0000 2 0 99 888 0 11 11 0 6666 000 000000000 7777 7 7 7 7777777777 7 99 1111111111111111111111111111111111111111111111111111111111111111 1 999 6 7
consensus : ATGTTAT-TTTGTTGCC-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GACTT-ATTACTTGACGTCCA--GG-AGAAAA---CTG-ACCG-TACAAGACA-AACATTTAT---AA--TCACAGAAATAAT-ACCAACAATGTCTCTGTAAAGGTTTG-AA-CA-TGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAA--T--TA---A----TACTACAT--TACAGGCAGGCAG-T-GATT-ATA-------ATA---AATGAA--------TAATCT-TG--ATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACT-AA---GTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGTTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------CATAC-AAA-GT--A--ATGATTTG-AA-GAATATC-T-AAATT-CT-AAAGTTAAGAA-AT-AA-TA-G--CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATA-TAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-TAAGTAAAAAT-ACG-TAAAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
Reference ( family-401 ) : ATGTTAT-TTTGTTGCC-----AA-GTTCTT-TTGGTAGTT-GT-GATGTTGAT-GTGGAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GACTT-ATTACTTGACGTCCA--GG-AGAAAA---CTG-ACCG-T-CAAGACA-AACATTTAT---AA--TCACAGAAATAAT-ACCAACAATGTCTCTGTAAAGGTTTG-AA-CA-TGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAA--T--TA---G----TACTACAT--TACAGGCAGGCAG-T-GATT-ATA-------ATA---AATGAA--------TAATCT-TG--ATA-CGAGTG--GTGG-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTCGGACAA-ANG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTA--AGCAA--GAGA-CTAACACTAGC-AGA-TNTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGNACAAATACT-AA---GTGATAT-A--ATAG-TTACATAT-T----G-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGGACGTAAAATAATGTATT--TGTAACTTAACAGACTTTGNTTTTTCATTTTGCACGGGATTTAGTTACGACAATGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------CATAC-AAA-GT--A--ATGGTTTG-AA-GAATATC-T-AAATT-CT-AAAGTTNAGAA-AT-AA-TA----CCTATGC-AATAAA---TCG--TAAAACAG--AAAAACATGAATA-TAAAGAG---CGTACAGTGAAAAATT--G-ATACTAAAAAGTAAA-TAAGTAAAAAT-ACG-TAAAANT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACACAATTTACTGTGGGAA--ATTAC-TTA-TAACGCGGANAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTNTCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTCATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACTA-CT-CGACA-AAG----------TATAT-T--AACAC--------------------GTATGTCCA--TG----------ACAAAG-A-AT-AA-AAT---ATAAAATATGTAGGAAGGAATGCGGCGCAT
gi|1 : ATGTTATGTTTGTTGCTT----AA-GTTCTT-TTGGTAGTT-TC-GATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GACTT-ATTACTTGACGTCCA--GG-AG-AAA---CTG-ACTG-TACAAGACA-AACATTTAT---AA--TCACAAAAATAATAACCAACAATGTCTCTGTAAAGGTTTG-AA-CATTGC-GGTG-GCACA---A-T-AATTA-CATG-TG----CGTGGACACCA-TTAAAACAATA------GTTAACATGTTTGATT----CAGAGTCAAA-CAG--TAATAA-AA-CAGA-CACTGTAA-CAAAAG-C-TGTGTGCAAGGACACCT-TTAAACAATGT--TA---AAGATTACTACAT--TACAGGCAGGCAG-T-GATTAATA-------ATA---AATGAA--------TAATCT-TGAAATA-CGAGTG--GTGG-GGAATTTTG-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAGGATTGT-TA-TTC-GACAA-ATG-----------------TCAGA-CTCATTT-ACACAA-ATAAGA---AGGACTT---CCGGTTAC--TAAAG---AAA------GGGGGGGGG--GTA--AGCAA--GAGACCTAACACTAGC-AGA-TATAATAAAACT-AATG-AACAAAAAGAGCAACTACTAATTCTA-GTTAAAGTGCACAAATACTAAA---GTGATAT-A--ATAG-TTACATAT-T----G-TCAAGCTGAGGAC-AAAACGTGAACACATAGA-CAAAAAT-G-CAATACAGAA---A-------AT-GGC-ATCCA--CATTTAC---AAAATCGCA-TAT-CGAACGTAAAATAATATATTTGTGTAACTTAACAGAC-------------TTTGCACGCGATTTGGTTATGACAATGAAAACC-ATTAACATGGAATAGC-GTTATCTAGAAATTGTAATTTATCTAGAAATTGTAATTTTGCCCGC-TTTACA--AAGAAACTATAAAAATTTTATACAAAA-GTA-A--ATGATTTG-AACGAATATC-TAAAATT-CTCAAAGTTTAGAA-AT-AA-TACGTTCCTATGC-AATAAA---TTG--TAAAACAG--AAAAACATGAATA-TAAAGAG---C-TACAGTGGAAAATT--G-ATACTAAAAAGTAAA-----------------TAAAAGT-TCTTTAACCTGAAA--TCAGGACAGGA--ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGACCCGGACAATTCA--AGC-TAGC-GTCTCCTG-TTTA-GCCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGAAATTAAAACAACTCAATTTACTGTGGGAA--ATTAC-TTA-C-ACGCGGACAGAC-AGG-TAAATGACA-TA-TG-G-G-AAA---TTAAGTTATCT-TAACAAA-TTAT-ACTAAAGATGTCGGCTTTATTGA-TT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGATT--TTCAGAGACAAAA---CGCCAAAAA--------GGGGGGGA---CAGACCT-CG-CGACA-AAG----------TATAT-T--AACAC--------------------ATATGCCCA--TG----------ACAAAG-A-ATAAA-AAT---ATAAAATATGTAGGAAGGAATGCGGCACAT
gi|10 : ------GTT--CATTTTTGATT---ACAGATTCAAAGCAG--TGTTAG----CAGG-CACTGTAT-TAAAAG-------TG--------------AGACAA--T--TA---G------CTATATAGT-CAGGCAGACAA-TTGATT-ACATTGTTAAATA---AATAAA--------TAATATCTGT-ATAATGAGTG--ATGGCGGAATTTTACACATAA--ATGGGGGAAAATAACCAATTGATAGAAAATTTGGACTTTGGCT-ATGAATGATTGTGTA-TTCGAGCAAGATGGAGTTGTTTGGAACAATTAAGATTTTATTG-A-AC-A-ATAAGA---GGGACTT---CTGGTTAC--Tt
gi|11 : g--TGA--TTTT-TCGGA-A--T---AAGAAAAAC---CGTGAAAAA--------AAGTGC-A---CAGAATAACT-CGACA-A-G----------TATAT-C--GGCAA--------------------GTGTG-CCA--CG----------ACAAAG-AGAT-A--------ATAAAATA---------GAATGCGG-GCA
gi|12 : tcTGTTAT-TTAATTGC------GA-GTTCTTGTTTGTAGTTTGTTGGTGTTGATTGTGGA-TCTGAAAATCAGGACAGGAGACGGAATTGTAATTT--CAGT--GACTTTATTGTTTGACGTCCACAGG-AGAAAA-----------------GACATAACATTTATTTTAA--TCACAGAAATAAT-ACCACCAATGCCTCTGTAAAGGTTTG-AG-CA-TGCAGGTGAGCACAAATA-T-AATTAGCATG-TG----CAT-GACACCA-Tccagttttggcaattaaatgtccttgattacattaattcggaaaaattttgttgtttttttttaaacttaaaaattgtacatggacgtgaataaatataaaatgtaccgaaagttattagaattataagattgc
gi|13 : ATTCTACGTTAAAGTATACACGTCCT-AACTCGTGAAGTCA--ATAG--TA-ATA-------G-TCAAG------------GTGTGAACAGAGAGACCAAAAATAA-C--TGCAGAAAATA-------AT-GTT-ATCTG--CATTTACAAAAAAATCGCA-CAT-TGG
gi|14 : TT-ATTACTTGACGTCCA--G--------------------------ACA-AAC-----T---AA--T----GAA------ACCAACAATGTCTCTGTAAAGGTTTG-AATCA-TGC-GTTG-GCACA---A-TAAACTA-GATG-CG----CATGGACACCA-TTAAAACAATA------ATT-A
gi|15 : t-AATAAAAAGTCG--AAAAATAG--AAAAA------TA-TAAAGAG---CGTGC--TGAAAAATT--G-ATACT-AAAAGTATA-T---TAAAAA----G-TACATGT-TTTTT-ACCTTAAG--TTAGGACAGG
gi|16 : ga-----AA-GATTTT-TTG----TT-GT-GATGTTGAG-GTGGA-TCTGAAA-TCAGGACAAGAGACGGAATTGTAAATT--C-GT--GACT
gi|17 : gtataaatgtggacatgtatcacaCACGGGATTTAGTTATGACAATGAAAACCGGTGAACATGGAATAGC-ATTATCTTGAAATTGTAATT----------TTG---------CCGC-TTTAC----AGAAATTATAA------CATAC-AAA-GT--A--cttatgtac
gi|18 : TTTTTT-TA-CAAA-TTAC-TCTAAAACCGTCTGCTTCATTGA-TT-TATGTTACGC--TAACTA-T--TGG--TTTTCTC--A-T--TTCAAAG
gi|19 : ATGTT---TTTGTTGTC-----A--GTTCTT-TTTGTAGTT-GT-GATGTTGAT-GT-GAATCTGAAA-TCAGGACAGGAGACAAACTGGCGAATgaggggggggggggg
gi|2 : gtgATTAA-AAACAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACA-----------------------T--TACAGGCAGGCAG-T-GAT---------------------------------AATCT-TG--ATA-CGAGTG--GTGG-GGAATTTTA-ACAGAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCA-ATGAAGGA-------------------AG-----------------TCAGA-CTCATTTTACACAA--TAAG------GACTT---CCGGTTAC--TAAAGA-AAAA------GGGGGGGGG--GTGTTATCAA--GAGA-CTA-CACTAGC-AGA-TATAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACT-AA---GTGATAT-A--ATAG-TTACATAT-C----G-TCAAGATGAGGAC-ATCGCGTGAACACATAGA-CGAAAATGA-CAATACAGAA---A-------AT-GGC----TA--CATTTAC--AAAAATCGAA-TAT-CGGACATAAAATAATGTATT--TGTAACTTAACACACTTTGTTTCTTCATTTTGCACAGGATTTAGTTACGACAATGAAAACCGATTATTATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGC-TTTACA--AAGAAACTATAA------C-TAT-AAACAT--A----GATCTA-CA-AAGTA--------------AAAG--AAAAACATGAA-TAGG--CCTATAC-AG-AGA---GCG--T--AGTGG--AAA---ATTGATGCTAAAAAG---T---------AAAAT-------------AAGTAA---------AAAT-ACG-TTAAACT-TCTTT-ACCTGAAA--TCAGGACAGGAG-ACGGAATTGTAAATTCGTGACTTTATTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGCTTAGC-GTCTCCTG-TTTAGGTCATTGAGTTAAT--CTTGTTGATTGTAA---TGTGCG-ATAAGAG---TATT--------T--TGTAATTGAAATTAAAACAACACAATGTACTGTGTGAAACATTACTTTA-TAACGCGGTATTAC-AGG-TAAATGACA-TA-TG-G-G-GAAAATTTAAGCTTTCT-TAACAAATTTAT-ATAAAGGATGTCGGCTTT--------------GACAC--TA---A-TAATGAGTTTTTTTCAGA-TTATTCAGAGAC-AAA---CATCATAAAGGGAAAGGGGGGGGGG---CAGGCTA-CT-CAACA-AAGA---------TATAT-T--AACAC--------------------ATTAGTCTACCTGGGATATGTGTACAAAA-A-AT-AATGATTTAAGAAAGTATATA
gi|20 : AGGAAGN--ATTT-------T--TGTAATTGACATTAAAACAGCACAATT----------------AC-TTA-TAACGCGGAGGGAA-AGG-TAAATGATA-TA-AG-A-G-GAA---tctaaaatatcatgtagggtataagcacatgagtgaaaatatcctttcacttaaacactcacgagtctgtttgtttactgctcaacttttggattaaatttcacaattaatgttaagctaccaattatgtctcacccagccgtgtatctagtaatatacataaaattgctgtccggaactaattataaaataaaaactagattatgttccaaagtttctaaaagctcataaagaatatagtcaaaaatttgcagtgaatgtgcatat
gi|21 : g-AA-CA-TGC-GGTG-GCACA---A-T-AATTA-TATG-TG----CGTGGACACCA-TTAATACAATA------GTT-ACATGTTTGATT---ACAGATTCAA
gi|22 : aCTA--CATTTAC--AAAAATCGCA-TAC-TGGACGTAAAATAATGAATT--TGTAACT-------CTTTTTTTTTT--TTTT
gi|23 : ggctaaACTT---CCGGTTAC--CAAAGGCGAAA------GGGGGAAGGATGTA--AGCAAATGAGA--TAACACTAGCGAAA-TTTAA-AAAt
gi|24 : ATTT-ATTGCTTGACGTCCA--GG-GGAAAAGTGTTG-ACTGTT-CAAGACA-ATCA-TAAT---AA--ATACAGg
gi|25 : AGA-C-AACGCTTGC-AAAATCTACTAAAAGT-AATGAAACGGAA--AGCAACTACAAATTCTA-Gg
gi|26 : T-TTTGTTGCC-----AAAGTTCTT-TTGGTAGTT-GT-CATG
gi|27 : gggattgt-ACCAGCAATGCCTCTGTAAAGGTTTGAAA-CA-TG
gi|28 : -TT-GAAA-GACAC--TA---A-T--TGA--TTTTCTCAGA-C--TTt
gi|3 : at-GAT-TTGAG-GTGTATCTTGAAA-TCAGGACAGGAGACGGAATTGTAAATTTCC-GTTGGACTT-ATTACTTGACGTCCA--GGGAGAAAA---CTGGATCG-TACAAGACA-AACATTTAT---AA--TCACAGA--TAAT-TCCAACAATGTTTCTGTAAAAGTT-G-AA-CA-TGC-GGTG--CACA-----T-A--TA-CATG-TG----C-TGGACACCATTTAAAAC-ATA------GTT-ACATGTTTGATT---ACAGATTCAAC-CAGTATATTAA-AA-AAGACCACTGTAACCAAAAGCCATGTGTGCAAGGACACCTATTAAACAATGT--TAAAGA----TACTACAT--T-CAGGCAGGCAGCT-GATT-ATA-------ATA---AATGAA--------TAATCT-TG--ATA-CG-GTGTTGGGG-GGAA-TTTA-ACATAAGGGGGGGG-AAATTAACCAATTGATAG-AAATTCG--CTTT-GC--ATGAAGAG--GC-TATTTCGGACAA-TGG-----------------ACAGACCTCATTT-ACACAATGTAAGAAGCAGGACTT---CCGGTTAC--TTAAGA-AAA-----------GGGGG--GTA--AGCAAT-GAGA-CTACAATTAGC-AGA-T-TAATAAAACTAAATG-AACAAAA--G--AACTACTAATTC-A-GTTAAAGTGCACAAATACT-AA---GTAATAT-A--ATAGTTTAC-TAT-T----GTTCAAGATGA-GACAAAAATGTGAACAC-TAG---AGAAATGG-GCATACAGAA---A-------ATGGGC-ATCTA--CATTTAC--AAAAATCGCA-TAT-CGAACGTAAAA-A----------------TAACAAAC--TG------------GCACGGGA-TTAGTTACGACAATG-AAGCCGATTAACAT-GAATAGCAGTTATCTAGAAA-TGTTATT----------TTG---------CCGC-TTTACACGAAG----TATAA------TATA-------------------TG-AACGAATATC-T-AAATT-CT-CA--TTTAGAA-AT-AATTACGTTCCTATGCAAATAAA---TTG--TAAAACAG--AAAAACA-GAATA-TAAAGAG---CG-ACAGTGGAAAATT--GCCTACTAGAAAGTAAA-TAAGTAAAAATAACATTAAAAGT-TATTT--CCTGAAAATTCAGGACAGGAGAACGGAATTGTTAAATCGTGACTTTATTACTTGACGGATCCAGGGAGAAAAACTGA-CCGGAC-ATTCAAGAGC-TAGCGGTCTCCTGTTTTA-GTCATTGAGTTAAT--CTTGTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA----------TGTAATTGAAATT-AAACAACTCAA-TTAC-GT-GGAA--ATTAC-TTATTAACGCGGAC-GAC-AGGCTAAA-------A-TG-G-G-ACA---TCACATTGT
gi|4 : gtgatgttgaggtggagatgtagaatctggtggatgttgagagtg-TTTGTTGCTTAATTAG-TTTCTT-TTGGTAGTT-GT-CATGTTGAT-GTAAAATCTGAAA-TCAGGACAGGAGACGGAATTGTAAATT--C-GT--GACTTTATTACTTGACGTCCA--GG-AGAAAA---CTG-ACCG-TACAACACA-AGCATTTAT---AAGATCACAGAAATAAT-ACCAAC---GTCTCTGTAAAGGTTTG-AAACA-TGC-GGTG-GCACA---AAT-AATTA-CATG-TGACTGCGTGGACACCA-TAAAAACAATA------GTT-ACATGTTTGATT---ACAGATTCAAA-CAG--TATTAA-AA-CAGA-CACTGTAA-CAAAAG-CATGTGTGCAAGGACACCT-TTAAACAA--TGTTA---AAGATTACTACGT--TACAGGCAGGCAG-T-GATT-ATA-------ATATTAAATGAA--------TAATCT-TG--ATA-CGAGTG--GTGT-GGAATTTTA-ACATAA--ATGGGG-AAATTAACCAATTGATAGAAAATTCG--CTTT-GCT-ATGAAAGATTGC-TA-TTCGGACAA-AAGG----------------TCAGA-CTCATTA-AAACAA--TAAGA---AGGGCTTGAACCGTTTAC--TAAAAA-AAAAAAAAAGGGGGGGGGG--GTA--AGCAA--GATA-CTA-CACTAGC-AGA-TCTAATAAAACT-AATGAAACAAAA--AGCAACTACTAATTCTA-GTTAAAGTGAACAAATACT-AA---GTGATAT-ATAACAG-TTACATAT-TCGTTG-TCAAGATGAGGAC-AAAGCGTGAACACATAGA-CAAAAATGG-CAATACAGAA---A-------AT-GACTATCTATACATTTAC--AAAAATCGCA-TAT-CGAACGTAAAATAATATATT--TGTAACTTAACAGACTTTGCTTTTTCATTTTGCACGGGATTTAGTTACGACATTGAAAACCGATTAACATGGAATAGC-GTTATCTAGAAATTGTAATT----------TTG---------CCGT-TTTACA--AAGAAAGTATAA------TATAC-AAA-GTAAA--ATGATTTGTAA-GAATATC-TAAAATT-CT-AAAGTTAAGAA-AT-AA---------TATG----TAAA---TCG--CATAACAG--AAAAACATGAATA-TAAAGAG---CGTACAGTGAAAATTT--G-ATACTAAAAAGTAAA-TAAGTAAAAAT-ACG-TAAAACT-TCTTT-ACCTGAAA--TCAGGACA-GAG-AGGGAATTGTAAATTCGTGACTTTTTTACTTGACG--TCCA-GGAG-AAAACTGA-CCGGACAATTCA--AGC-TAGC-ATCTCCTG-TTTT-GTCACTGAGTTAAT--CTTGTCAA-TGTAA---TGTGCG-AAAAGAAGC-TGTTA-------TAAGGTAATTGAAATTAAAACAACACAATTTACTGTGataaaacgatt
gi|5 : atgTACATATGT----G-TCAAGATGAG-AC-AAAGCATGAACACGTAGAACAAAAATGAACAATGCGGAA---ATAGCCTTAC-GGT-ATCTA--CATTTA---AAAAATCGCACTATGTGGACGTAAAATAATGTATT--TGTA---TGACAGACTTTTGTTTTTCATTTTGCACGGGATATTG-TACGACAATGAAA--CGATAAACATGCAATAGC-ATTAT-TAGAAATTGTAA-A----------TTG---------TTGCGTTTACA--AAGAAACTA-AA------CATAC-AAA-GT--AATATAGTT------GATTTTCGT-AAG------AAAGAAAAGGA-AT-AA-TA-------A----AATAAA---CAGTTTCAGACAATTAAGAACATGAATA-AAAAGt
gi|5 : acta--AAGAA--CATGA-------ATAA-AAA-GT--A--AATGTTTG-AA-GAATATT-G-AAATTTCT-CAAGTT------------TA----CTTATGC-AATAAA---TCG--CAAAACAG--AAAAACATGAATA-TAAAAAGAGGCGTA--GTGAAAAATTTGG-ATACTAAAA-GTAAAATAAGTAAAA-T-ACT-AAAAACTGTCTTT-AC-TGAAT--TCAGGACAGAAA-A-----------------GACT--AT-ACTTGAGT--TCCA-GGAA-AAAACTGA-CCAAGCGATTCA--AGC-TAG--------TG-TTTA-TGCATTGAGTTAAT---TTGTCAA-TGTAA---TG-GTGAAAAAGAAGCTTATTA-------T--TATAATT-AAATTAAAACAACACAA-TTACT-TTGGAA--ATTAC-TTATTAACACGGAGATAT--GG-CAAATGACA-TACTG-GAG-AAG---TTAAGTT-TCT-TAACAAA-TTAT-ACT-AAGATGTCAGCTTCATTGA-C-----------C--TA---AGT--TGA--TTTTCTCAGA----TTCAGAGACAAAA---TGCCAAAAA---------GGGGGAA---GAGACTA-ATGCAACACAAGTACAGTTAGTTATAT-T--AACAC--------------------ATATGTCCA--TG----------GAAAGA-A-AT-AA-AA----ATAAAATGTGTAGGAAGtaaatgtttgaagaatattgaaatttctcaagtttacttatgcaataaatcgcaaaacagaaaaacatgaatataaaaagaggcgtagtgaaaaatttggatactaaaagtaaaataagtaaaatactaaaaactgtctttactgaattcaggacagaaaagactatacttgagttccaggaaaaaactgaccaagcgattcaagctagtgtttatgcattgagttaatttgtcaatgtaatggtgaaaaagaagcttattattataattaaattaaaacaacacaattactttggaaattacttattaacacggagatatggcaaatgacatactggagaagttaagtttcttaacaaattatactaagatgtcagcttcattgacctaagttgattttctcagattcagagacaaaatgccaaaaagggggaagagactaatgcaacacaagtacagttagttatattaacacatatgtccatggaaagaaataaaaataaaatgtgtaggaagattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|6 : actatacatatgtgtcaagatgagacaaagcatgaacacgtagaacaaaaatgaacaatgcggaaatagccttacggtatctacatttaaaaaatcgcactatgtggacgtaaaataatgtatttgtatgacagacttttgtttttcattttgcacgggatattgtacgacaatgaaacgataaacatgcaatagcattattagaaattgtaaattgttgcgtttacaaagaaactaaacatacaaagtaatatagttgattttcgtaagaaagaaaaggaataataaaataaacagtttcagacaattG-AAAACTGG-CCGGACGATTCA--AGC-TAGC-GTCTCCTG-TTTA-GGAAATGA-TTAATTTCTTGTCGA-TGTAAAATTCTGCG-AAAAGAAGC-TATTA-------T--TGTAATTGACATTAAAACAACACAATTTACTTTTGAAA--ATTAC-TTA-TAACGCGGAGAAAA-AGG-CAAATGACA-GA-AGAG-G-AAA---TTAAGTTTTCT-TAGCAGA-TTAC-ACTACAGATGTCGGCTTCAGTGATTT-GAAG-GACAC--TA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGACAAAA---TGCCAAAAAGGAAGGG-GGGGGGGAGGTCAGACTA-CT-CGACC-AAG----------TA----T--AACAT--------------------GTATG--------------------AA-----------------ATAAAATATGCTCGAAGGAATGattccaaatgttgttacagttttctatctatctaaaaaattacaaaaattgtgtgggatacatgcacaaaatatagaattatgacaacagtttctaaaataaagaaattgttcaaaatgggtgaatgtgcatacat
gi|7 : GTCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTAAGTATTAT--TGTAATTGAAATTAAAACAACACA-TTTACT-TGGGAA--ATTAC-T-A-TAACGCGGACAGACCAGG-TAAATGGCAATA-TG-G-GGAAA---TTAAGTTATCTATAACAA--TTATTATTAAAGATGTCGCTTTAATTGA-TTTGAAG-GACACACTA---A-T--TGA--TTTTCTCAGA-T--TTCAGAGAAAAAAAACCGCCAAAAA--------AGCGGGGA---CAGACTA-CT-CGACA-AAG----------TATATATTAAACAC--------------------ATATGTCCA--TG----------ACAAAG----------AT---ATGAA------AGGA---AATGCGACGCATttaaacgtcctttaagtgaactggtttttgttctcaaaaattccaaatgttgttacagtttctatttatcatctaaaaacttacgaaattgtgtgggaacatggacagaatatagaaaatatcggaaagttctaaaattaaagaaattgtcaaatggtgattgaatgtgcctata
gi|8 : GTTAAT--CTTATCGA-TGTAA---TGTGCG-AAAAGAAGC-TATTA-------C--TGTAATTGAAATTAAAACAACACAATTTATTcgtttaagtaaactagtctttgttctcaaaattccaaatgttgttacagtttctaatcatctaaaactcttcgaaattgcgtgggaacatgaaacaaaatatagaatatgtccaaagtttactaaaattaaagaaattgtaaaatggtgaaatgtgcctatatg
gi|8 : -G-AAA---TTAAAACAAC----ACAAT-TTAT-TNNNNAGAGGTCGGCTTCATTGA-TTTGAAG-GACAG--T----------GA--TTTTCTCTTA-T--TTCATAGACAAAA---CGTCAAAAG--------GGAGGGGG----GGACTA-CT-TGACA-AAG----------TATAT-T--AACACATACATACTAACACATACATGTATGTCCA--TG----------GCAAAGAA-AT-AA-AAT---ATAAAACATnnnnagaggtcggcttcattgatttgaaggacagtgattttctcttatttcatagacaaaacgtcaaaagggagggggggactacttgacaaagtatattaacacatacatactaacacatacatgtatgtccatggcaaagaaataaaatataaaacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata
gi|9 : gttaatcttatcgatgtaatgtgcgaaaagaagctattactgtaattTG-CATGGTG----CATGGACACCA-TTAAAACAATACCGGTAGTT-ACATGTTTGAGTGTAACA-ATTCAAA-CAG--TATTAACAA-CAGA-CACTGTAA-CAAAAA-AATGTGCGTAAGGACACCT-TTA----------T---------TACTACAT--TACAGACAGACAG-T-GATT-CTA-------ATA---AATGAATACCCCGGTAATCT-TG--A---------------------TTTA-ACATAA--ATGGGG-AATTTAACCGAATGATAGAAAATTCG--CTTT-GCTAATGAAGGATTGT-TA-TTTGGACAA-ATG-------------------A----TTGTTT-ACAC-A-ATAAGA---GGGACTT---CTGGCTACTATAAACA-AAAA------CGAGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgttctcaaaaattccaattgttgttacaggttctatttatctaaaaacttacgaaattgtgtgggaacatggacaaagtatagaaaatgtcaaaagtttctaaaatcaaaaaaattgtcaaaatggtgaatgtgcatata