lowQualScore : 111111111111111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 222222 11111 1 22 11 4444444444 3333333333 3333333333333333 222 22222222 66666666666666666666666666666666666666666666666666 11 1111 22222222222 1111 11111 1111 111 222222222 222222 22 1111111 1111 22222 11 1111 111111111111111111111111111111111111111111111111111111 3333333333 222 1111 1 111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 44 888888 33333 7 3 0 99 1 33 11 3 0 0 0 44 1 1 66 2222222222 0000000000 99 1111111111111111 000 5 88888888 6666 33333333333333333333333333333333333333333333333333 3 22 7777 5 5 77777777777 0 2222 22222 666 8888 777 0 6 666666666 999999 00 7 6 6 5 888 5 8888888 2 8 6 1 8888 0 66666 0 55 0 2222 666666666666666666666666666666666666666666666666666666 77 999 5 77 7777777777 6 000 3 4 2 5 6 2222 1 7 1 0 666666 6 6 2 6 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : .. ...... ..... . . . .. . .. .. . . . . .. . . .. .......... .......... .. ................ ... . ........ .... .................................................. . .. .... . . ........... . .... ..... ... .... ... . . ......... ...... .. . . . . ... . ....... . . . . .... . ..... . .. . .... ...................................................... .. ... . .. .......... . ... . . . . . .... . . . . ...... . . . . .........................................................................................................................................................
lowQualScore : 00 888888 22222 0 7 3 22 4 22 00 2 8 8 6 66 8 4 22 0000000000 0000000000 22 3333333333333333 000 7 66666666 3333 11111111111111111111111111111111111111111111111111 0 00 9999 7 7 33333333333 9 1111 99999 111 1111 999 7 7 333333333 000000 00 1 0 9 0 888 3 6666666 5 0 7 7 8888 6 00000 6 22 7 9999 777777777777777777777777777777777777777777777777777777 99 666 4 11 0000000000 0 000 2 0 5 7 7 8888 8 5 0 3 444444 7 7 5 7 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
consensus : TGATGATTAATAGTTA------TGTATAATGTCCATGTCTTCCAAACGCAGANGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCC-CTNTTTGAAATGGGCATGGACCANTGGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGATGT--GTT----C-G---G--C--TCGAA---GA-AG--------AC-GA-GAAAGN-----AA-TA---------GG------TAA--A------TAAAG-----TAGAA-AAAAT----AAA-G-GAAA-------T---AGGCT----AGGGTAG----GGAAAT-A-AAGATAAT--TAAAGC---ATCAGTGGAAG-AGC----C----TAAGGAATTGC-----GGTACTG-GGTGCANTTATC-CTG---GATAAGGGTGANGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTCA--N-TACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAA---------------------ATA--GA---A----AAAT-------T-A----TAT--TG-C-GATCAGCTTA-TAN-----AATCAATAA--CTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATANATGTCCCCATCTCT------TGTAAAG-AACCCAG-TAACAC-GTTACATTATTGTTGAT--CG-TCGGTCAAGGGATAGGTGACGGGTACNTACGTGATTATT---------TTGATTAATT--TATAGGATTTGTAA---ATTTGTTTTGAACCTTAGTTATTGTTGCGTGCTCAA-GTATAT--AACACCGTAACCAAGTTCAA
Reference ( gi|2 ) : TGATGATTAATAGTTA------TGTATAATGTTCATGTCTTCCAATCGCAGAGGTGATTTATAATATTGGAATG--GTCCAAGGACCTGTTCATCC-TTCTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGATGT--GTT----T-G---G--C--TCGAA---GA-AG--------AC-GA-GAAAGT-----TA-TA---------GG------TAA--A------TAAAGC----TAGAA-AAAAT----AAA-G-GAAA-------T---AGACT----AGGGTAG----GGAAAT-A-AAGATAAT--TAAAGC---ATCAGTGGAAG-AGC----C----TAAGGAATTGC-----GGTACTC-GATGTAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAATAGGAACTTGGCTCCGGAACACGGTGCAGGTACCCAGTCA--A-TACACTACCCTCTGTGATTAGAAACACAA-GATAAGTAACTCAATACCAATCAACGCTCGGAT--AGAGAA---------------------TTA--GA---A----AAAT------GT-A----TAT--TG-C-GATCAGCTTG-TAG-----AATCAATAT--CTCAAGTAGAGTAAG-AGGAAAATT-ATAAAATATACGTCCCCATATCT------TGTAAAG-AACCCAG-TAACAC-GTTACATTACTATTGAT--CA-TTGG--AAGGGGTA-TTGAAAGATAGCTA-ATG-TTATTTACTACACGTTGGTCTATTGCTGTAGTATT--TAACGCATTTGGGTTGACTCCTAGCCA--GTTATGCATACAATGTACATTCAACATTGTAACT---TTCAAA
gi|1 : TGATGATT--TAGTTAGTATATTGTATAATGTCCATGTCTTCCAAACGCAGAGGTGAATTCTAATATTAGAATGAGGTCCAAGGACCTGTTCCCCC-TCTTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----CAGTCTGATGT--GTT----TCG---G--C--TCGAAAGAGA-AG--------AC-G--GAAAAA-----AA-TA---------GACGCCAATAA--AGGG---TAAAACAAATTAGAATAAGAT----AAA-G-ATAA-------T---AGACT----AGGGTAG----GGAAATTA-AAGATAAA--TAAAGC---ATCAGTG-AAG-AGC----T----TAAGGAATTGCTAC--AGTACTG-GGTGCATTTATCTCTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGATACCCAGTCACTACTACACTACCCTCGGTGATTAGAAACCCGGCGATAAGTAACTCGGTACCAATCAA-GCTCAGA---AGAGAAANNNNNNNNNNNNNNNNNNNNNNN--NN---A----AAATTTTAGAGT-AAAATTATATTG-C-GATCAGCTTACTAGCATATAATAAATAA--CTCAAGTAGAGTAAG-AGGAAAATT-AT-AAATATAAGTCCCCATCTCT------TGTAAAG-AACTCAG-TAACAC-GTTACATT----TTGGTGGCAGTCGGTCAAGGGAT------AGGGTACATACGTGATTATT---------TTGATTAATT--TATAGGATTTGTAA---ATTTGTTTTGAACCTTAGTTATTGTTGCGTGCTCAA-GTATAT--AACACCGTAACCAAGTTCAA
gi|4 : aataactgcTGATGATTAGTAGTTA------AGTATAATGTCCATGTCTTCCAAACGCAGAGGTGATTTATGATATTAGAATA--GTCCAAGGACCTGTTC-CCC-CTCTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAATAGTCA----GTCAGT----C----TGATGT--GTT----C-G---G--C--TCGAAAGAGA-AG--------AC-GA-AAAAGA-----AA-TACACGCAAAAAG------TAA--A------TAATG------AGAA-TAAAT----AAA-G-AGAA-------C---AGACT----AGGGTAG----GGAAAT-A-AAGATAAA--TAAAGC---ATCAGTGGAAG-AGC----T----TAAGGAATTAC-----ATTACTG-GGTGCATTTATC-TTG---GATAAGGGTGACGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTCA--C-TACACTACCCTCGGTGATTAGAAACCCGG-GATAAGTAACTCGGTAGCAATCAACGCTCAGAT--AGAGAG---------------------ATAGTGT---A----AAAT-------T-A----TAT--TG-C-GATCAGCTTgt
gi|16 : atattgTGATGGTTAATAGTTA------TGTATA-----CATGTCTTCCAAACGCAGAAGTGATTTATAATATTGGAATG--ac
gi|3 : aatttgGATGATTAATAGTTA------TGCATAATGACCATGTCTTCCAAACGCAGGAGTGATTTATAATATTGGAATG--GTCCAAGGACCTGCTC--CCGCTCTTTGAAATGGGCATGAACGAATGGTATAAAAGAGCTTGCAGTTGAGAA-----A----ACCAGTTAGTC----TGATGT--GTT----C-G---GATCG-TCGAA---GA-AG--------AT-GA-GAGAGT-----AG-TA---------GG------TAA--A------TAAAAT----TAAAA-TAAAT----AAA-G-AGAA-------T---AGGCT----AGGGTAG----GAAAAT-A-AAGATAAT--CAAAGC---ATCAGTCGAAG-AAC----C----TAAGGAATTGC-----AGTACTG-GGTACAATTATC-CTG---GATAAGGGTGAAGCACTCTGT-------ACTT
gi|7 : atatactggTATGA-GCCCATGTCTTCCAAACACTGATGTGACTCGGACTAATGGAATA--GTCCGAAATCCTGTTTACCC-CTATTTG-AATGGGTATAGCCCTTTGCTATATAAGAAGCTGCA---GAGGC-----AGT--ATCAAG----C------ACTT--GTTAGTAT-G---A--CGGCCGAA---GA-AGTA------GCAAA-GAAAAC-----GA-AA---------AG------TAA--A------TTAA------T--AA-AGAATTGTGAAACG-GAAG-------TGAAAGGTT----AGGGT------TGAAAT-ATAAGACACTGGTAAAGTTAAACCA-TGGAAgcnttgcagtactgggtacaattatcctggataaaggtgaagcactctgtacttatcaataggaacttggctccggaacacggttcaggtacccagtcactacactaccctctgtgattagagatccgatataagtaactcggtaccaatcaacgctcgggtagagaaatagaaaaagatcgtattgagatcagtttatatataacataactcagtagagtaggtaggcg
gi|8 : aatgagtaaggaacgatacCATGTCTTCCAAATACTGATGTGACTCAGACTAATGGAATA--GTTCGAGATCCTGTTTACCC-CTATTTGAA-TGGGTATAGCCCTTTCCTATATAAGAAGCTGCAG-----AA-----GCCTTATCAAT----C----ACTTGTTAGTC----T-GACAG--C--T-GAA---GA-AGCAGCAGCGAA-GA-AAAAG-------A-AA---------GG------TAA--A------TTAA------TA-AA-GAATT----AAA-GTGAAA-------C---GGAATTGAAAGGTTAT----GG---T-T-AATATA----TAA-GC-----CACTGGTAA-AGTTAAAC----CAAGGAATTGttgtg
gi|5 : aaaatgaaccTGT--GTC----C-A---G--C--TCAAA---GA-AA--------AA-AAAGAAAGTAGACCTAATA---------GG------TAATAA------TAAAGT----TAGAATAAAATT---AAA-G-GA----------------TT----AGGGTAGTAGAGGAAAT-A-AATATAAT--TAAA-CTA-ATCAGTGGA-G-TGC----C----TAAGGGATTGC-----GGTACT--GGTGCA-TTAT------------------------CCTGG-------A--TA-----AGGAACTTGGT--CGGAACATGGTAATGGTACC-AG-CA--A-TAAACTGC--TCTGTAATTAGAAACG--A-GCTAAGTAAATCG-TAACAA--AAC--TCGG-T--AGAGAA-----------------------A--GA---AGGATAATT------GT-A----TA----G-C-GATCAG-TTG-TTA-----GATCAATAA--CTCAAGAAGAGTAAG-AGGCAAATTGATAA--TTTATGTCCG---GTC----------AAAG-CACCCAG-TAA-AA-GTTTCAGTATT
gi|6 : tgGAA---GAGAG--------AC-AA-GGAAGA-----AA-TA---------GG------TAA--ACCAAAATAAAG-----TAGGA-ATAAG----AAA-A-GAAAGAATATAT---ATGCT----ACGATAT----ATAAAT-A-AAGATAA------AGC---ATCAGTGGTAGAAGC----TTATATAAGGGATTGCAGTGGGGTATTG-AGTGCAATTATC-CAGTCTGATAAtataatgtgaa
gi|3 : TTGC-----AGTACTG-GGTACAATTATC-CTG---GATAAAGGTGAAGCACTCTGT-------ACTTATCAATAGGAACTTGGCTCCGGAACACGGTTCAGGTACCCAGTCA--C-TACACTACCCTCTGTGATTAGAGATCCGA-TATAAGTAACTCGGTACCAATCAACGCTCGGGT--AGAGAA---------------------ATA--GA---A----AAAG------ATCG----TAT--TG-A-GATCAGTTTA-TAT-----A--TAACATAACTC-AGTAGAGTAGGTAGGaaaacaccttctcctatcatcgtttcctgatgaccattatgagcagggcggtagtaatcagctgcaattatcctgaataatggtgatgcaccttattctttcaacttagcgatagaacttagttcaggaacacagtgcaagt
gi|6 : atatactgggatgattaatagttatgcataatgaccatgtcttccaaacgcaggagtgatttataatattggaatggtccaaggacctgctcccgctctttgaaatgggcatgaacgaatggtataaaagagcttgcagttgagaaaaccagttagtctgatgtgttcggatcgtcgaagaagatgagagagtagtaggtaaataaaattaaaataaataaagagaataggctagggtaggaaaataaagataatcaaagcatcagtcgaagaacctaaggaattgcagtactgggtacaattatcctggataagggtgaagcactctgtacttgcnGTAATCAGCTGCAATTATC-CTG---AATAATGGTGATGCACCTTATTCTTTCAACTTAGCGATA-GAACTTAGTTCAGGAACACAGTGCAAGTcg
gi|14 : gaagagagacaaggaagaaataggtaaaccaaaataaagtaggaataagaaaagaaagaatatatatgctacgatatataaataaagataaagcatcagtggtagaagcttatataagggattgcagtggggtattgagtgcaattatccagtctgataaaaaacaccttctcctatcatcgtttcctgatgaccattatgagcagggcggtaACTG-GGTGCATTTATC-CTG---GATAAGGGTAAGGCACCCTGT-------ACTTAGCAAAGGGTACTTGGCTCGGGGACACGGTGCAGGTACCCAGTCA--C-TACACTA
gi|12 : AGGTACCCAGCCA--A-TACACTGCCCTCTGTAATTAGAAACCCGA-GCTAAGTAACTCGGTACCAATAAACTCTCGGAT--AGAGAA-----------------------A--GAAGGA----AAAT-------T-G----TAT--TG-C-GATCAGTTTG-TA
gi|9 : TGACTCAGTACCAGTCAACGCTTGGATCTAGAGAA---------------------ATA--AG---A----TAAT------TC-A----TGT--TGGT-GATCAGGTAA-TAT-----AGCCAATAA--CTCAAGAACAGTAAG-AGGAAAATT-ATAAA-TAAATGTCCCTATCTCT------TGTAAAG-AACCCAG-TGACAC-GTTACA-TGTTGGTGAC--AG-CCGGTCAAGGGATAGGTGACAAATA-CTA-GTA-T
gi|11 : TACCAGTCAACGCTCG----------------------------------------------------------T-A----TAT--GG-TTGATCAACTAA-CAG-----GG--AAAAA--CTCAAGTA-----AG-AGGAAAATT-ATAAA-TAGATGTCATCATCTCT------TGTAAAG-AA-CCAG-TAAAACTATCATATTatacacgaaatcttgctttgattagttcatttgcagagttatgcttagaaaca
gi|13 : CAGTGTA-TAT-----AAT-AA-AC--CTCCAGAAGAGTAAG-AGAAAAAT-----AAATATATG--CCCATCT-T------TGTAAGA-GACTCAGTTAACAC-GTTACA--A--AT--AT--CA-TTGA--AGAGAGTg
gi|10 : AGTAAG-AGGAAAATT-AT-AAATACATGTCCCCATCTCT------Tg
gi|15 : ATATCTAATCCCTGTATAGTACCCCAT-TAACAC-GTTACATTttggtggcactgagctggtgaggggatagggtacatacgtgattattttgtttaggatttgtagttctgttttggacc
Alignments
lowQualScore : 222222 111 1 3333333333 2222222222 4444444 111 11111 111111 222222222222 111111 33333333333333333 111 1111 1111111 1111 111 222222222 22222 1111111 111 111111 111111 1 111 11 777777777777777777777777777777777777777777 111111 222 11 2 22 222
lowQualScore : 0 333333 1 000 1 77 0 1 1 7 1 2 2 3333333333 5555555555 2222222 77 5 777 5 99999 88888 1 444444 000000000000 66 444444 99999999999999999 111 0000 5 5 6666666 888 0000 5 5 5 0 777 555 5 111111111 11111 9999 0 5 4 777 2 6666666 2 0 000 1 2 6 9999 5 666666 0 66 5 5 777 3 222222 33 44 5 1 6 5 5 8 1 0 1 0 0 5 5 2 5 5 444 7 99 0 3 3 111111111111111111111111111111111111111111 3 222222 3 2 3 333 88 4 0 77 111
lowQualScore : . ...... . ... . .. . . . . . . . .......... .......... ....... .. . ... . ..... ..... . ...... ............ .. ...... ................. ... .... . . ....... ... .... . . . . ... ... . ......... ..... .... . . . ... . ....... . . ... . . . .... . ...... . .. . . ... . ...... .. .. . . . . . . . . . . . . . . . . ... . .. . . . .......................................... . ...... . . . ... .. . . .. ...
lowQualScore : 8 000000 4 333 0 99 7 3 0 3 0 2 5 5555555555 7777777777 9999999 99 7 555 0 44444 11111 0 444444 999999999999 99 444444 00000000000000000 111 6666 0 0 2222222 888 6666 0 0 0 1 444 666 7 111111111 22222 4444 1 3 4 888 8 2222222 1 1 000 0 5 7 0000 0 888888 5 99 0 0 111 7 888888 33 44 7 4 6 0 7 5 0 1 4 1 4 0 0 5 0 0 666 0 88 8 8 2 000000000000000000000000000000000000000000 8 666666 2 5 2 333 55 0 0 55 000
consensus : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTTGAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGACGTGTT-------CGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGNA------ATA---------G--GTAA--A------TAAAG------------T-AGAA-A-AAAT----AAA-G-GGA-------AT---AGGCT----AGGGTAG-GGAAAT-A-AAGATAAT--TAAAGC---ATCAGTGGAAG-AGC----C----TAAGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAAT-A--GG--AAA--AT-T-ATATTG-C-GATCAGCTTA------TATAATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATCTCTTGTAAAG-AACCCAG-TAACACGTTA-C-A-TATTGGTGACAGTCGGTCAAGGGATAGGTGA-A-------GTACATACGTGA----TTATT---------TTGATTNATT--TATAGNATTTGTAA---ATTTGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
Reference ( family-3981 ) : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGANGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTNTTTGAAATGGGCATGGACCANTGGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGATGTGTT-------CGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGNA------ATA---------G--GTAA--A------TAAAG------------T-AGAA-A-AAAT----AAA-G-GAA-------AT---AGGCT----AGGGTAG-GGAAAT-A-AAGATAAT--TAAAGC---ATCAGTGGAAG-AGC----C----TAAGGAATTGC-----GGTACTG----GGTGCANTTATC-CTG---GATAAGGGTGANGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ANTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAAT-A--GA--AAA--AT-T-ATATTG-C-GATCAGCTTA------TANAATCA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATANATGTCCCCATCTCTTGTAAAG-AACCCAG-TAACACGTTA-C-ATTATTGTTGATCGTCGGTCAAGGGATAGGTGACG------GGTACNTACGTGA----TTATT---------TTGATTAATT--TATAGGATTTGTAA---ATTTGTTTTGAACCTTAGTTATTGTTGCGTGCTCAA-GTATAT--AACACCGTAACCAAGTTCAA
gi|1 : TGATGATT--TAGTTAGTATATTGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGAATTCTAATATTAGAATGAGGTCCAAGGACCTGTTCCCCCTCTTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----CAGTCTGATGTGTTT------CGG--C-TCGAAAGAGA-AG-----AC-G---GAAAAAA------ATA---------GACGCCA--A------TAAAGGGTAAAACAAATT-AGAATA-AGAT----AAA-G-ATA-------AT---AGACT----AGGGTAG-GGAAATTA-AAGATAAA--TAAAGC---ATCAGTG-AAG-AGC----T----TAAGGAATTGCTAC--AGTACTG----GGTGCATTTATCTCTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGATACCCAGTCACTACTACACTACCCTCGGTGATTAGAAACCCGGCGATAAGTAACTCGGTACCAATCAA-GCTCAGA---AGAGAAA
gi|1 : aataactgcT-A--GAGTAAA--AT-T-ATATTG-C-GATCAGCTTACTAGCATATAATAA-ATAACTCAAGTAGAGTAAG-AGGAAAATT-ATAAA-TATAAGTCCCCATCTCTTGTAAAG-AACTCAG-TAACACGTTA-C-ATT-TTGGTGGCAGTCGGTCAAGGGATAGG------------GTACATACGTGA----TTATT---------TTGATTAATT--TATAGGATTTGTAA---ATTTGTTTTGAACCTTAGTTATTGTTGCGTGCTCAA-GTATAT--AACACCGTAACCAAGTTCAAnnnnnnnnnnnnnnnnnnnnnnnnnaaaattttagagtaaaattatattgcgatcagcttactagcatataataaataactcaagtagagtaagaggaaaattataaatataagtccccatctcttgtaaagaactcagtaacacgttacattttggtggcagtcggtcaagggatagggtacatacgtgattattttgattaatttataggatttgtaaatttgttttgaaccttagttattgttgcgtgctcaagtatataacaccgtaaccaagttcaagt
gi|10 : aataactgctgatgatttagttagtatattgtataatgtccatgtcttccaaacgcagaggtgaattctaatattagaatgaggtccaaggacctgttccccctcttttgaaatggacatggaccagtagtataaaagagcctgcagttgagaaaatcagtcagtctgatgtgtttcggctcgaaagagaagacggaaaaaaatagacgccaataaagggtaaaacaaattagaataagataaagataatagactagggtagggaaattaaagataaataaagcatcagtgaagagcttaaggaattgctacagtactgggtgcatttatctctggataagggtgaggcaccctgtacttagcaaaaggaacttggctcgggaacacggtgcagatacccagtcactactacactaccctcggtgattagaaacccggcgataagtaactcggtaccaatcaagctcagaagagaaannnnnnnnnnnnnnnnnnnnnnnnnaaaatttAGTAAG-AGGAAAATT-ATAAA-TACATGTCCCCATCTCTTTTG----------G-TGGCAC---------------TGA--GCTGGTGAGGGGATAGG------------GTACATACGTGA----TTATT---------TTG-TT--------TAGGATTTGTAG---TTCTGTTTTGGACCgt
gi|11 : TACCAGTCAACGCTCG-----------------------------T-ATATGG-TTGATCAACTAA------CAGGG--A-AAAACTCAAG-----TAAG-AGGAAAATT-ATAAA-TAGATGTCATCATCTCTTGTAAAG-AA-CCAG-TAAAAC--TATC-A-TATTG
gi|12 : AGGTACCCAGCC---AATACACTGCCCTCTGTAATTAGAAACCCGA-GCTAAGTAACTCGGTACCAATAAACTCTCGGAT--AGAGAAAGAA--GG--AAA--AT-T-GTATTG-C-GATCAGTTTG------TA
gi|13 : CAGTGTA------TATAATAA-AC--CTCCAGAAGAGTAAG-AGAAAAAT-----AAATATATG--CCCATCT-TTGTAAGA-GACTCAGTTAACACGTTA-CAAATATCATTGA
gi|14 : ACTG----GGTGCATTTATC-CTG---GATAAGGGTAAGGCACCCTGT-------ACTTAGCAAAGGGTACTTGGCTCGGGGACACGGTGCAGGTACCCAGTC---ACTACACTAagagagtg
gi|15 : AATATAT---CTAATCCCT-GTATAGTACCCCAT-TAACACGTTA-C-ATT-TCGGTGGCAGTTTGTCA------AAGTGA-----------------GTG------TACT---------CTGATTTATT--TAT--CATTTGT
gi|16 : TGATGGTTAATAGTTA------TGTATA-------CATGTCTTCCAAACGCAGAAGTGATTTATAATATTGGAATG--g
gi|2 : aatttgTGATGATTAATAGTTA------TGTATAATG--TTCATGTCTTCCAATCGCAGAGGTGATTTATAATATTGGAATG--GTCCAAGGACCTGTTCATCCTTCTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGATGTGTT-------TGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGTT------ATA---------G--GTAA--A------TAAAGC-----------T-AGAA-A-AAAT----AAA-G-GAA-------AT---AGACT----AGGGTAG-GGAAAT-A-AAGATAAT--TAAAGC---ATCAGTGGAAG-AGC----C----TAAGGAATTGC-----GGTACTC----GATGTAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAATAGGAACTTGGCTCCGGAACACGGTGCAGGTACCCAGTC---AATACACTACCCTCTGTGATTAGAAACACAA-GATAAGTAACTCAATACCAATCAACGCTCGGAT--AGAGAATT-A--GA--AAA--ATGT-ATATTG-C-GATCAGCTTG------TAGAATCA-ATATCTCAAGTAGAGTAAG-AGGAAAATT-ATAAAATATACGTCCCCATATCTTGTAAAG-AACCCAG-TAACACGTTA-C-ATTACTATTGATCATTGG--AAGGGGTA-TTGAAA------GATAGCTA-ATG-----TTATTTACTACACGTTGGTCTATTGCTGTAGTATT--TAACGCATTTGGGTTGACTCCTAGCCA--GTTATGCATACAATGTACATTCAACATTGTAACT---TTCAA
gi|3 : GATGATTAATAGTTA------TGCATAATG--ACCATGTCTTCCAAACGCAGGAGTGATTTATAATATTGGAATG--GTCCAAGGACCTGCTC-CCGCTCTTTGAAATGGGCATGAACGAATGGTATAAAAGAGCTTGCAGTTGAGAA-----A----ACCAGTTAGTC----TGATGTGTT-------CGGATCGTCGAA---GA-AG-----AT-G-A-GAGAGTA------GTA---------G--GTAA--A------TAAAA------------T-TAAA-ATAAAT----AAA-G-AGA-------AT---AGGCT----AGGGTAG-GAAAAT-A-AAGATAAT--CAAAGC---ATCAGTCGAAG-AAC----C----TAAGGAATTGC-----AGTACTG----GGTACAATTATC-CTG---GATAAGGGTGAAGCACTCTGT-------ACTTa
gi|3 : atatactggTTGC-----AGTACTG----GGTACAATTATC-CTG---GATAAAGGTGAAGCACTCTGT-------ACTTATCAATAGGAACTTGGCTCCGGAACACGGTTCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAGATCCGA-TATAAGTAACTCGGTACCAATCAACGCTCGGGT--AGAGAAAT-A--GA--AAAAGAT-C-GTATTG-A-GATCAGTTTA------TAT-ATAACATAACTC-AGTAGAGTAGGTAGGgcnttgcagtactgggtacaattatcctggataaaggtgaagcactctgtacttatcaataggaacttggctccggaacacggttcaggtacccagtcactacactaccctctgtgattagagatccgatataagtaactcggtaccaatcaacgctcgggtagagaaatagaaaaagatcgtattgagatcagtttatatataacataactcagtagagtaggtaggcg
gi|4 : atatactgggatgattaatagttatgcataatgaccatgtcttccaaacgcaggagtgatttataatattggaatggtccaaggacctgctcccgctctttgaaatgggcatgaacgaatggtataaaagagcttgcagttgagaaaaccagttagtctgatgtgttcggatcgtcgaagaagatgagagagtagtaggtaaataaaattaaaataaataaagagaataggctagggtaggaaaataaagataatcaaagcatcagtcgaagaacctaaggaattgcagtactgggtacaattatcctggataagggtgaagcactctgtacttgcnTGATGATTAGTAGTTA------AGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATGATATTAGAATA--GTCCAAGGACCTGTTC-CCCCTCTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAATAGTCA----GTCAGT----C----TGATGTGTT-------CGG--C-TCGAAAGAGA-AG-----AC-G-A-AAAAGAA------ATACACGCAAAAA--GTAA--A------TAATG--------------AGAA-T-AAAT----AAA-G-AGA-------AC---AGACT----AGGGTAG-GGAAAT-A-AAGATAAA--TAAAGC---ATCAGTGGAAG-AGC----T----TAAGGAATTAC-----ATTACTG----GGTGCATTTATC-TTG---GATAAGGGTGACGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCGGTGATTAGAAACCCGG-GATAAGTAACTCGGTAGCAATCAACGCTCAGAT--AGAGAGAT-AGTGT--AAA--AT-T-ATATTG-C-GATCAGCTTA------cg
gi|5 : atattgTGTGTC-------CAG--C-TCAAA---GA-AA-----AA-A-AAGAAAGTAGACCTAATA---------G--GTAATAA------TAAAG------------TTAGAATA-AAAT----TAA-A-GGA-------TT---AGGGT----AG--TAGAGGAAAT-A-AATATAAT--TAAA-CTA-ATCAGTGGA-G-TGC----C----TAAGGGATTGC-----GGTACTG----G-TGCA-TTAT------------------------CCTGG-------AT-------AAGGAACTTGG-TCGG-AACATGGTAATGGTACC-AG-C---AATAAACTGC--TCTGTAATTAGAAAC--GA-GCTAAGTAAATCG-TAACAA--AAC--TCGG-T--AGAGAAAG-AA-GG--ATA--AT-T-GTATAG-C-GATCAG-TTG------TTAGATCA-ATAACTCAAGAAGAGTAAG-AGGCAAATTGATAA--TTTATGTCCG-GTC------AAAG-CACCCAG-TAA-AAGTTT-C-AGTATTc
gi|6 : tgGAA---GAGAG-----AC-A-A-GGAAGAA------ATA---------G--GTAA--ACCAAAATAAAG------------T-AGGA-A-TAAG----AAA-A-GAAAGAATATAT---ATGCT----ACGATAT-ATAAAT-A-AAGA------TAAAGC---ATCAGTGGTAGAAGC----TTATATAAGGGATTGCAGTGGGGTATTG----AGTGCAATTATC-CAGTCTGATAAtataatgtgaa
gi|6 : GC-----GGTAGTAATCAGCTGCAATTATC-CTG---AATAATGGTGATGCACCTTATTCTTTCAACTTAGCGATA-GAACTTAGTTCAGGAACACAGTGCAAGTaaaacaccttctcctatcatcgtttcctgatgaccattatgagcagggcggtagtaatcagctgcaattatcctgaataatggtgatgcaccttattctttcaacttagcgatagaacttagttcaggaacacagtgcaagt
gi|7 : gaagagagacaaggaagaaataggtaaaccaaaataaagtaggaataagaaaagaaagaatatatatgctacgatatataaataaagataaagcatcagtggtagaagcttatataagggattgcagtggggtattgagtgcaattatccagtctgataaaaaacaccttctcctatcatcgtttcctgatgaccattatgagcaggTATGA-G--CCCATGTCTTCCAAACACTGATGTGACTCGGACTAATGGAATA--GTCCGAAATCCTGTTTACCCCTATTTG-AATGGGTATAGCCCTTTGCTATATAAGAAGCTGCA---GAGGC-----AGT--ATCAAG----C------ACTTGTTAGTATGACGG--C--CGAA---GA-AGTA---GCAA-A-GAAAACG------AAA---------A--GTAA--A------TTAA-------------T---AA-A-GAATTGTGAAACG-GAA-------GTGAAAGGTT----AGGGT---TGAAAT-ATAAGACACTGGTAAAGTTAAACCA-TGGAA
gi|8 : aatgagtaaggaacgatacAATGAACCCATGTCTTCCAAATACTGATGTGACTCAGACTAATGGAATA--GTTCGAGATCCTGTTTACCCCTATTTG-AATGGGTATAGCCCTTTCCTATATAAGAAGCTGC-----AGAA-----GCCTTATCAAT----C------ACTTGTTAGTCTGACAG--C-T-GAA---GA-AGCAGCAGC-GAA-GAAAAAG------AAA---------G--GTAA--A------TTAA-------------T-A-AA-G-AATT----AAA-GTGAA-------AC---GGAATTGAAAGGTTAT-GG---T-T-AATAT-AT----AAGC-----CACTGGTAA-AGTTAAAC----CAAGGAATTGttgtg
gi|9 : aaTGACTCAGTACCAGTCAACGCTTGGATCTAGAGAAAT-A--AG--ATA--AT-TCATGTTGGT-GATCAGGTAA------TATAGCCA-ATAACTCAAGAACAGTAAG-AGGAAAATT-ATAAA-TAAATGTCCCTATCTCTTGTAAAG-AACCCAG-TGACACGTTA-C-A-TGTTGGTGACAGCCGGTCAAGGGATAGGTGACAAATACTAGTATATACACGAAATCTTGCT---------TTGATTAGTT--CAT
Alignments
lowQualScore : 222222 111 1 3333333333 2222222222 4444444 111 11111 111111 222222222222 111111 33333333333333333 111 1111 22222222222 111 111 1111 1111 22222 1111111 111 11111111 111111 1 1 66666666666666666666666666666666666666666666 22222222 222222 1 11 1 11 222
lowQualScore : 0 333333 1 000 1 77 0 5 6 1 3 3333333333 5555555555 0 2222222 77 5 777 5 99999 88888 1 444444 000000000000 66 444444 99999999999999999 111 0000 99999999999 5 888 5 5 555 5 555 5 2222 2222 11111 9999 0 5 4 777 3 6666666 0 3 0 000 0 2 6 9999 00000000 0 66 5 5 777 3 222222 5 1 5 1 6 5 5 8 0 1 7777 0 0 5 5 2 5 0 2 33 0 22222222222222222222222222222222222222222222 3 8 22222222 0 333333 0 0 88 1 5 88 111
lowQualScore : . ...... . ... . .. . . . . . .......... .......... . ....... .. . ... . ..... ..... . ...... ............ .. ...... ................. ... .... ........... . ... . . ... . ... . .... .... ..... .... . . . ... . ....... . . . ... . . . .... ........ . .. . . ... . ...... . . . . . . . . . . .... . . . . . . . . .. . ............................................ . . ........ . ...... . . .. . . .. ...
lowQualScore : 8 000000 4 333 7 99 7 5 7 0 2 5555555555 7777777777 7 9999999 99 7 555 0 44444 11111 0 444444 999999999999 99 444444 00000000000000000 111 6666 00000000000 0 888 0 0 555 0 666 7 1111 1111 22222 4444 1 1 4 888 4 2222222 7 0 1 000 7 5 7 0000 77777777 5 99 0 0 111 7 888888 7 0 7 4 6 0 7 5 1 4 2222 1 1 0 0 5 0 0 4 88 8 66666666666666666666666666666666666666666666 8 8 66666666 8 555555 0 8 55 0 5 00 000
consensus : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTT-GAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGACGTGTT-------CGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGNA------ATA---------G--GTAA--A------TAAAG------------T-AGAA-A-AAAT----AAAGGGAA-------T---AGGCTAGGGTAG-GGAAA---T-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAAT-A-G-G-AAA--AT-T-ATATTG-C-GATCAGCTTA------TATA-ATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATC--TCTTGTAAAG-AACCCAGT-AACACGTTA-CA-TATTGGTGACAGTCGGTCAAGGGATAGGTGA--------AGTACATACGTGA----TTATT---------TTGATTNATT--TATAGNATTTGTA-A---ATT-TGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
Reference ( family-3981 ) : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTT-GAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGACGTGTT-------CGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGNA------ATA---------G--GTAA--A------TAAAG------------T-AGAA-A-AAAT----AAAGGGAA-------T---AGGCTAGGGTAG-GGAAA---T-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAAT-A-G-G-AAA--AT-T-ATATTG-C-GATCAGCTTA------TATA-ATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATC--TCTTGTAAAG-AACCCAGT-AACACGTTA-CA-TATTGGTGACAGTCGGTCAAGGGATAGGTGA--------AGTACATACGTGA----TTATT---------TTGATTNATT--TATAGNATTTGTA-A---ATT-TGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
gi|1 : TGATGATT--TAGTTAGTATATTGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGAATTCTAATATTAGAATGAGGTCCAAGGACCTGTTC-CCCCTCTTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----CAGTCTGATGTGTTT------CGG--C-TCGAAAGAGA-AG-----AC-G---GAAAAAA------ATA---------GACGCCA--A------TAAAGGGTAAAACAAATT-AGAATA-AGAT----AAAGATAA-------T---AGACTAGGGTAG-GGAAA---TTA-AAGATAAA--TA-AAGC---ATCAGTG-AAGA-GC----TTA----AGGAATTGCTAC--AGTACTG----GGTGCATTTATCTCTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGATACCCAGTCACTACTACACTACCCTCGGTGATTAGAAACCCGGCGATAAGTAACTCGGTACCAATCAA-GCTCAGA---AGAGAAA
gi|1 : aataactgc-A-G-T-AAA--AT-T-ATATTG-C-GATCAGCTTACTAGCATATA-ATAA-ATAACTCAAGTAGAGTAAG-AGGAAAATT-ATAAA-TATAAGTCCCCATC--TCTTGTAAAG-AACTCAGT-AACACGTTA-CA-TTTTGGTGGCAGTCGGTCAAGGGATAGG------------GTACATACGTGA----TTATT---------TTGATTAATT--TATAGGATTTGTA-A---ATT-TGTTTTGAACCTTAGTTATTGTTGCGTGCTCAA-GTATAT--AACACCGTAACCAAGTTCAAnnnnnnnnnnnnnnnnnnnnnnnnnaaaattttagagtaaaattatattgcgatcagcttactagcatataataaataactcaagtagagtaagaggaaaattataaatataagtccccatctcttgtaaagaactcagtaacacgttacattttggtggcagtcggtcaagggatagggtacatacgtgattattttgattaatttataggatttgtaaatttgttttgaaccttagttattgttgcgtgctcaagtatataacaccgtaaccaagttcaagt
gi|10 : aataactgctgatgatttagttagtatattgtataatgtccatgtcttccaaacgcagaggtgaattctaatattagaatgaggtccaaggacctgttccccctcttttgaaatggacatggaccagtagtataaaagagcctgcagttgagaaaatcagtcagtctgatgtgtttcggctcgaaagagaagacggaaaaaaatagacgccaataaagggtaaaacaaattagaataagataaagataatagactagggtagggaaattaaagataaataaagcatcagtgaagagcttaaggaattgctacagtactgggtgcatttatctctggataagggtgaggcaccctgtacttagcaaaaggaacttggctcgggaacacggtgcagatacccagtcactactacactaccctcggtgattagaaacccggcgataagtaactcggtaccaatcaagctcagaagagaaannnnnnnnnnnnnnnnnnnnnnnnnaaaattttagAGTAAG-AGGAAAATT-ATAAA-TACATGTCCCCATCTCTTTTG------------GT-GGCAC--------------TGA--GCTGGTGAGGGGATAGG------------GTACATACGTGA----TTATT---------TTG-TT--------TAGGATTTGTA-G---TTC-TGTTTTGGACCgt
gi|11 : TACCAGTCAACGCTCG----------------------------T-ATATGG-TTGATCAACT-A-------ACA-GGGA-AAAACTCAAG-----TAAG-AGGAAAATT-ATAAA-TAGATGTCATCATC--TCTTGTAAAG-AA-CCAGT-AAAAC--TATCA-TATTG
gi|12 : AGGTACCCAGCC---AATACACTGCCCTCTGTAATTAGAAACCCGA-GCTAAGTAACTCGGTACCAATAAACTCTCGGAT--AGAGAAAGAA-G-G-AAA--AT-T-GTATTG-C-GATCAGTTTG------TA
gi|13 : CAGTGTA------TATA-ATAA-AC--CTCCAGAAGAGTAAG-AGAAAAAT-----AAATATATG--CCCATC--T-TTGTAAGA-GACTCAGTTAACACGTTA-CA-AAT
gi|14 : ACTG----GGTGCATTTATC-CTG---GATAAGGGTAAGGCACCCTGT-------ACTTAGCAAAGGGTACTTGGCTCGGGGACACGGTGCAGGTACCCAGTC---ACTACACTAatcattgaagagagtg
gi|15 : AATATAT---CTAATC--CCT-GTATAGTACCCCATT-AACACGTTA-CA-TTTCGGTGGCAGTTTGTCAAAG------TGA-----------------GTG------TACT---------CTGATTTATT--TAT--CATTTGT
gi|16 : TGATGGTTAATAGTTA------TGTATA-------CATGTCTTCCAAACGCAGAAGTGATTTATAATATTGGAATG--g
gi|2 : aatttgTGATGATTAATAGTTA------TGTATAATG--TTCATGTCTTCCAATCGCAGAGGTGATTTATAATATTGGAATG--GTCCAAGGACCTGTTCATCCTTCTTT-GAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGATGTGTT-------TGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGTT------ATA---------G--GTAA--A------TAAAGC-----------T-AGAA-A-AAAT----AAAGGAAA-------T---AGACTAGGGTAG-GGAAA---T-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTC----GATGTAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAATAGGAACTTGGCTCCGGAACACGGTGCAGGTACCCAGTC---AATACACTACCCTCTGTGATTAGAAACACAA-GATAAGTAACTCAATACCAATCAACGCTCGGAT--AGAGAATT-A-G-A-AAA--ATGT-ATATTG-C-GATCAGCTTG------TAGA-ATCA-ATATCTCAAGTAGAGTAAG-AGGAAAATT-ATAAAATATACGTCCCCATA--TCTTGTAAAG-AACCCAGT-AACACGTTA-CATTACTATTGATCATTGG--AAGGGGTA-TTGA--------A--AGATAGCTAATG--TTATTTACTACACGTTGGTCTATTGCTGTAGTATT--TA-ACGCATT-TGGGTTGACTCCTAGCCA--GTTATGCATACAATGTACATTCAACATTGTAACT---TTCAA
gi|3 : GATGATTAATAGTTA------TGCATAATG--ACCATGTCTTCCAAACGCAGGAGTGATTTATAATATTGGAATG--GTCCAAGGACCTGCTC-CCGCTCTTT-GAAATGGGCATGAACGAATGGTATAAAAGAGCTTGCAGTTGAGAA-----A----ACCAGTTAGTC----TGATGTGTT-------CGGATCGTCGAA---GA-AG-----AT-G-A-GAGAGTA------GTA---------G--GTAA--A------TAAAA------------T-TAAA-ATAAAT----AAAGAGAA-------T---AGGCTAGGGTAG-GAAAA---T-A-AAGATAAT--CA-AAGC---ATCAGTCGAAGA-AC----CTA----AGGAATTGC-----AGTACTG----GGTACAATTATC-CTG---GATAAGGGTGAAGCACTCTGT-------ACTTa
gi|3 : atatactggTTGC-----AGTACTG----GGTACAATTATC-CTG---GATAAAGGTGAAGCACTCTGT-------ACTTATCAATAGGAACTTGGCTCCGGAACACGGTTCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAGATCCGA-TATAAGTAACTCGGTACCAATCAACGCTCGGGT--AGAGAAAT-A-G-A-AAAAGAT-C-GTATTG-A-GATCAGTTTA------TAT--ATAACATAACTC-AGTAGAGTAGGTAGGgcnttgcagtactgggtacaattatcctggataaaggtgaagcactctgtacttatcaataggaacttggctccggaacacggttcaggtacccagtcactacactaccctctgtgattagagatccgatataagtaactcggtaccaatcaacgctcgggtagagaaatagaaaaagatcgtattgagatcagtttatatataacataactcagtagagtaggtaggcg
gi|4 : atatactgggatgattaatagttatgcataatgaccatgtcttccaaacgcaggagtgatttataatattggaatggtccaaggacctgctcccgctctttgaaatgggcatgaacgaatggtataaaagagcttgcagttgagaaaaccagttagtctgatgtgttcggatcgtcgaagaagatgagagagtagtaggtaaataaaattaaaataaataaagagaataggctagggtaggaaaataaagataatcaaagcatcagtcgaagaacctaaggaattgcagtactgggtacaattatcctggataagggtgaagcactctgtacttgcnTGATGATTAGTAGTTA------AGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATGATATTAGAATA--GTCCAAGGACCTGTTC-CCCCTCTTT-GAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAATAGTCA----GTCAGT----C----TGATGTGTT-------CGG--C-TCGAAAGAGA-AG-----AC-G-A-AAAAGAA------ATACACGCAAAAA--GTAA--A------TAATG--------------AGAA-T-AAAT----AAAGAGAA-------C---AGACTAGGGTAG-GGAAA---T-A-AAGATAAA--TA-AAGC---ATCAGTGGAAGA-GC----TTA----AGGAATTAC-----ATTACTG----GGTGCATTTATC-TTG---GATAAGGGTGACGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCGGTGATTAGAAACCCGG-GATAAGTAACTCGGTAGCAATCAACGCTCAGAT--AGAGAGAT-A-GTGTAAA--AT-T-ATATTG-C-GATCAGCTTA------cg
gi|5 : atattgGTGTC-------CAG--C-TCAAA---GA-AA-----AA-A-AAGAAAGTAGACCTAATA---------G--GTAATAA------TAAAG------------TTAGAATA-AAAT----TAAAGGAT-------T---AGGGTAG--TAGAGGAAA---T-A-AATATAAT--TA-AA-CTA-ATCAGTGGA-GT-GC----CTA----AGGGATTGC-----GGTACTG----G-TGCA-TTAT------------------------CCTGG-------A--TA-----AGGAACTTGG-TCGG-AACATGGTAATGGTACC-AG-C---AATAAACTGC--TCTGTAATTAGAAAC--GA-GCTAAGTAAATCG-TAACAA--AAC--TCGG-T--AGAGAAAG-AAG-G-ATA--AT-T-GTATAG-C-GATCAG-TTG------T-TAGATCA-ATAACTCAAGAAGAGTAAG-AGGCAAATTGATAA--TTTATGTCCG-GTC--------AAAG-CACCCAGT-AA-AAGTTT-CAGTATTc
gi|6 : tgtGAA---GAGAG-----AC-A-A-GGAAGAA------ATA---------G--GTAA--ACCAAAATAAAG------------T-AGGA-A-TAAG----AAAAGAAAGAATATAT---ATGCTACGATAT-ATAAA---T-A-AAGATAA-------AGC---ATCAGTGGTAGAAGC----TTATATAAGGGATTGCAGTGGGGTATTG----AGTGCAATTATC-CAGTCTGATAAtataatgtgaa
gi|6 : GC-----GGTAGTAATCAGCTGCAATTATC-CTG---AATAATGGTGATGCACCTTATTCTTTCAACTTAGCGATA-GAACTTAGTTCAGGAACACAGTGCAAGTaaaacaccttctcctatcatcgtttcctgatgaccattatgagcagggcggtagtaatcagctgcaattatcctgaataatggtgatgcaccttattctttcaacttagcgatagaacttagttcaggaacacagtgcaagt
gi|7 : gaagagagacaaggaagaaataggtaaaccaaaataaagtaggaataagaaaagaaagaatatatatgctacgatatataaataaagataaagcatcagtggtagaagcttatataagggattgcagtggggtattgagtgcaattatccagtctgataaaaaacaccttctcctatcatcgtttcctgatgaccattatgagcaggTATGA-G--CCCATGTCTTCCAAACACTGATGTGACTCGGACTAATGGAATA--GTCCGAAATCCTGTTTACCCCTATTT-GAA-TGGGTATAGCCCTTTGCTATATAAGAAGCTGCAG---AGGC-----AGT--ATCAAG----C------ACTTGTTAGTATGACGG--C--CGAA---GA-AGTA---GCAA-A-GAAAACG------AAA---------A--GTAA--A------TTAA-------------T---AA-A-GAATTGTGAAACGGAAG------TGAAAGGTTAGGGT---TGAAA---T-ATAAGACACTGGTA-AAGTTAAACCA-TGGAA
gi|8 : aatgagtaaggaacgatacAATGAACCCATGTCTTCCAAATACTGATGTGACTCAGACTAATGGAATA--GTTCGAGATCCTGTTTACCCCTATTT-G-AATGGGTATAGCCCTTTCCTATATAAGAAGCTGC-----AGAA-----GCCTTATCAAT----C------ACTTGTTAGTCTGACAG--C-T-GAA---GA-AGCAGCAGC-GAA-GAAAAAG------AAA---------G--GTAA--A------TTAA-------------T-A-AA-G-AATT----AAAGTGAA----------------ACGGAAT-TGAAAGGTT-A-TGGTTAATA-TATAAGC-----CACTGGTAAA-GTTAAACCA----AGGAATTGttgtg
gi|9 : aaTGACTCAGTACCAGTCAACGCTTGGATCTAGAGAAAT-A-A-G-ATA--AT-TCATGTTGGT-GATCAGGTAA------TATA-GCCA-ATAACTCAAGAACAGTAAG-AGGAAAATT-ATAAA-TAAATGTCCCTATC--TCTTGTAAAG-AACCCAGT-GACACGTTA-CA-TGTTGGTGACAGCCGGTCAAGGGATAGGTGACAAATACTAGTATATACACGAAATCTTGCT---------TTGATTAGTT-------CATTTGCAGA---GTTATGCTTAGAA
Alignments
lowQualScore : 222222 111 1 3333333333 2222222222 4444444 111 11111 111111 222222222222 111111 33333333333333333 111 1111 22222222222 111 111 1111 1111 22222 1111111 111 11111111 111111 1 1 66666666666666666666666666666666666666666666 22222222 222222 1 11 1 11 222
lowQualScore : 0 333333 1 000 1 77 0 5 6 1 3 3333333333 5555555555 0 2222222 77 5 777 5 99999 88888 1 444444 000000000000 66 444444 99999999999999999 111 0000 99999999999 5 888 5 5 555 5 555 5 2222 2222 11111 9999 0 5 4 777 3 6666666 0 3 0 000 0 2 6 9999 00000000 0 66 5 5 777 3 222222 5 1 5 1 6 5 5 8 0 1 7777 0 0 5 5 2 5 0 2 33 0 22222222222222222222222222222222222222222222 3 8 22222222 0 333333 0 0 88 1 5 88 111
lowQualScore : . ...... . ... . .. . . . . . .......... .......... . ....... .. . ... . ..... ..... . ...... ............ .. ...... ................. ... .... ........... . ... . . ... . ... . .... .... ..... .... . . . ... . ....... . . . ... . . . .... ........ . .. . . ... . ...... . . . . . . . . . . .... . . . . . . . . .. . ............................................ . . ........ . ...... . . .. . . .. ...
lowQualScore : 8 000000 4 333 7 99 7 5 7 0 2 5555555555 7777777777 7 9999999 99 7 555 0 44444 11111 0 444444 999999999999 99 444444 00000000000000000 111 6666 00000000000 0 888 0 0 555 0 666 7 1111 1111 22222 4444 1 1 4 888 4 2222222 7 0 1 000 7 5 7 0000 77777777 5 99 0 0 111 7 888888 7 0 7 4 6 0 7 5 1 4 2222 1 1 0 0 5 0 0 4 88 8 66666666666666666666666666666666666666666666 8 8 66666666 8 555555 0 8 55 0 5 00 000
consensus : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTT-GAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGACGTGTT-------CGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGNA------ATA---------G--GTAA--A------TAAAG------------T-AGAA-A-AAAT----AAAGGGAA-------T---AGGCTAGGGTAG-GGAAA---T-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAAT-A-G-G-AAA--AT-T-ATATTG-C-GATCAGCTTA------TATA-ATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATC--TCTTGTAAAG-AACCCAGT-AACACGTTA-CA-TATTGGTGACAGTCGGTCAAGGGATAGGTGA--------AGTACATACGTGA----TTATT---------TTGATTNATT--TATAGNATTTGTA-A---ATT-TGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
Reference ( family-3981 ) : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTT-GAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGACGTGTT-------CGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGNA------ATA---------G--GTAA--A------TAAAG------------T-AGAA-A-AAAT----AAAGGGAA-------T---AGGCTAGGGTAG-GGAAA---T-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAAT-A-G-G-AAA--AT-T-ATATTG-C-GATCAGCTTA------TATA-ATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATC--TCTTGTAAAG-AACCCAGT-AACACGTTA-CA-TATTGGTGACAGTCGGTCAAGGGATAGGTGA--------AGTACATACGTGA----TTATT---------TTGATTNATT--TATAGNATTTGTA-A---ATT-TGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
gi|1 : TGATGATT--TAGTTAGTATATTGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGAATTCTAATATTAGAATGAGGTCCAAGGACCTGTTC-CCCCTCTTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----CAGTCTGATGTGTTT------CGG--C-TCGAAAGAGA-AG-----AC-G---GAAAAAA------ATA---------GACGCCA--A------TAAAGGGTAAAACAAATT-AGAATA-AGAT----AAAGATAA-------T---AGACTAGGGTAG-GGAAA---TTA-AAGATAAA--TA-AAGC---ATCAGTG-AAGA-GC----TTA----AGGAATTGCTAC--AGTACTG----GGTGCATTTATCTCTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGATACCCAGTCACTACTACACTACCCTCGGTGATTAGAAACCCGGCGATAAGTAACTCGGTACCAATCAA-GCTCAGA---AGAGAAA
gi|1 : aataactgc-A-G-T-AAA--AT-T-ATATTG-C-GATCAGCTTACTAGCATATA-ATAA-ATAACTCAAGTAGAGTAAG-AGGAAAATT-ATAAA-TATAAGTCCCCATC--TCTTGTAAAG-AACTCAGT-AACACGTTA-CA-TTTTGGTGGCAGTCGGTCAAGGGATAGG------------GTACATACGTGA----TTATT---------TTGATTAATT--TATAGGATTTGTA-A---ATT-TGTTTTGAACCTTAGTTATTGTTGCGTGCTCAA-GTATAT--AACACCGTAACCAAGTTCAAnnnnnnnnnnnnnnnnnnnnnnnnnaaaattttagagtaaaattatattgcgatcagcttactagcatataataaataactcaagtagagtaagaggaaaattataaatataagtccccatctcttgtaaagaactcagtaacacgttacattttggtggcagtcggtcaagggatagggtacatacgtgattattttgattaatttataggatttgtaaatttgttttgaaccttagttattgttgcgtgctcaagtatataacaccgtaaccaagttcaagt
gi|10 : aataactgctgatgatttagttagtatattgtataatgtccatgtcttccaaacgcagaggtgaattctaatattagaatgaggtccaaggacctgttccccctcttttgaaatggacatggaccagtagtataaaagagcctgcagttgagaaaatcagtcagtctgatgtgtttcggctcgaaagagaagacggaaaaaaatagacgccaataaagggtaaaacaaattagaataagataaagataatagactagggtagggaaattaaagataaataaagcatcagtgaagagcttaaggaattgctacagtactgggtgcatttatctctggataagggtgaggcaccctgtacttagcaaaaggaacttggctcgggaacacggtgcagatacccagtcactactacactaccctcggtgattagaaacccggcgataagtaactcggtaccaatcaagctcagaagagaaannnnnnnnnnnnnnnnnnnnnnnnnaaaattttagAGTAAG-AGGAAAATT-ATAAA-TACATGTCCCCATCTCTTTTG------------GT-GGCAC--------------TGA--GCTGGTGAGGGGATAGG------------GTACATACGTGA----TTATT---------TTG-TT--------TAGGATTTGTA-G---TTC-TGTTTTGGACCgt
gi|11 : TACCAGTCAACGCTCG----------------------------T-ATATGG-TTGATCAACT-A-------ACA-GGGA-AAAACTCAAG-----TAAG-AGGAAAATT-ATAAA-TAGATGTCATCATC--TCTTGTAAAG-AA-CCAGT-AAAAC--TATCA-TATTG
gi|12 : AGGTACCCAGCC---AATACACTGCCCTCTGTAATTAGAAACCCGA-GCTAAGTAACTCGGTACCAATAAACTCTCGGAT--AGAGAAAGAA-G-G-AAA--AT-T-GTATTG-C-GATCAGTTTG------TA
gi|13 : CAGTGTA------TATA-ATAA-AC--CTCCAGAAGAGTAAG-AGAAAAAT-----AAATATATG--CCCATC--T-TTGTAAGA-GACTCAGTTAACACGTTA-CA-AAT
gi|14 : ACTG----GGTGCATTTATC-CTG---GATAAGGGTAAGGCACCCTGT-------ACTTAGCAAAGGGTACTTGGCTCGGGGACACGGTGCAGGTACCCAGTC---ACTACACTAatcattgaagagagtg
gi|15 : AATATAT---CTAATC--CCT-GTATAGTACCCCATT-AACACGTTA-CA-TTTCGGTGGCAGTTTGTCAAAG------TGA-----------------GTG------TACT---------CTGATTTATT--TAT--CATTTGT
gi|16 : TGATGGTTAATAGTTA------TGTATA-------CATGTCTTCCAAACGCAGAAGTGATTTATAATATTGGAATG--g
gi|2 : aatttgTGATGATTAATAGTTA------TGTATAATG--TTCATGTCTTCCAATCGCAGAGGTGATTTATAATATTGGAATG--GTCCAAGGACCTGTTCATCCTTCTTT-GAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGATGTGTT-------TGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGTT------ATA---------G--GTAA--A------TAAAGC-----------T-AGAA-A-AAAT----AAAGGAAA-------T---AGACTAGGGTAG-GGAAA---T-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTC----GATGTAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAATAGGAACTTGGCTCCGGAACACGGTGCAGGTACCCAGTC---AATACACTACCCTCTGTGATTAGAAACACAA-GATAAGTAACTCAATACCAATCAACGCTCGGAT--AGAGAATT-A-G-A-AAA--ATGT-ATATTG-C-GATCAGCTTG------TAGA-ATCA-ATATCTCAAGTAGAGTAAG-AGGAAAATT-ATAAAATATACGTCCCCATA--TCTTGTAAAG-AACCCAGT-AACACGTTA-CATTACTATTGATCATTGG--AAGGGGTA-TTGA--------A--AGATAGCTAATG--TTATTTACTACACGTTGGTCTATTGCTGTAGTATT--TA-ACGCATT-TGGGTTGACTCCTAGCCA--GTTATGCATACAATGTACATTCAACATTGTAACT---TTCAA
gi|3 : GATGATTAATAGTTA------TGCATAATG--ACCATGTCTTCCAAACGCAGGAGTGATTTATAATATTGGAATG--GTCCAAGGACCTGCTC-CCGCTCTTT-GAAATGGGCATGAACGAATGGTATAAAAGAGCTTGCAGTTGAGAA-----A----ACCAGTTAGTC----TGATGTGTT-------CGGATCGTCGAA---GA-AG-----AT-G-A-GAGAGTA------GTA---------G--GTAA--A------TAAAA------------T-TAAA-ATAAAT----AAAGAGAA-------T---AGGCTAGGGTAG-GAAAA---T-A-AAGATAAT--CA-AAGC---ATCAGTCGAAGA-AC----CTA----AGGAATTGC-----AGTACTG----GGTACAATTATC-CTG---GATAAGGGTGAAGCACTCTGT-------ACTTa
gi|3 : atatactggTTGC-----AGTACTG----GGTACAATTATC-CTG---GATAAAGGTGAAGCACTCTGT-------ACTTATCAATAGGAACTTGGCTCCGGAACACGGTTCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAGATCCGA-TATAAGTAACTCGGTACCAATCAACGCTCGGGT--AGAGAAAT-A-G-A-AAAAGAT-C-GTATTG-A-GATCAGTTTA------TAT--ATAACATAACTC-AGTAGAGTAGGTAGGgcnttgcagtactgggtacaattatcctggataaaggtgaagcactctgtacttatcaataggaacttggctccggaacacggttcaggtacccagtcactacactaccctctgtgattagagatccgatataagtaactcggtaccaatcaacgctcgggtagagaaatagaaaaagatcgtattgagatcagtttatatataacataactcagtagagtaggtaggcg
gi|4 : atatactgggatgattaatagttatgcataatgaccatgtcttccaaacgcaggagtgatttataatattggaatggtccaaggacctgctcccgctctttgaaatgggcatgaacgaatggtataaaagagcttgcagttgagaaaaccagttagtctgatgtgttcggatcgtcgaagaagatgagagagtagtaggtaaataaaattaaaataaataaagagaataggctagggtaggaaaataaagataatcaaagcatcagtcgaagaacctaaggaattgcagtactgggtacaattatcctggataagggtgaagcactctgtacttgcnTGATGATTAGTAGTTA------AGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATGATATTAGAATA--GTCCAAGGACCTGTTC-CCCCTCTTT-GAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAATAGTCA----GTCAGT----C----TGATGTGTT-------CGG--C-TCGAAAGAGA-AG-----AC-G-A-AAAAGAA------ATACACGCAAAAA--GTAA--A------TAATG--------------AGAA-T-AAAT----AAAGAGAA-------C---AGACTAGGGTAG-GGAAA---T-A-AAGATAAA--TA-AAGC---ATCAGTGGAAGA-GC----TTA----AGGAATTAC-----ATTACTG----GGTGCATTTATC-TTG---GATAAGGGTGACGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCGGTGATTAGAAACCCGG-GATAAGTAACTCGGTAGCAATCAACGCTCAGAT--AGAGAGAT-A-GTGTAAA--AT-T-ATATTG-C-GATCAGCTTA------cg
gi|5 : atattgGTGTC-------CAG--C-TCAAA---GA-AA-----AA-A-AAGAAAGTAGACCTAATA---------G--GTAATAA------TAAAG------------TTAGAATA-AAAT----TAAAGGAT-------T---AGGGTAG--TAGAGGAAA---T-A-AATATAAT--TA-AA-CTA-ATCAGTGGA-GT-GC----CTA----AGGGATTGC-----GGTACTG----G-TGCA-TTAT------------------------CCTGG-------A--TA-----AGGAACTTGG-TCGG-AACATGGTAATGGTACC-AG-C---AATAAACTGC--TCTGTAATTAGAAAC--GA-GCTAAGTAAATCG-TAACAA--AAC--TCGG-T--AGAGAAAG-AAG-G-ATA--AT-T-GTATAG-C-GATCAG-TTG------T-TAGATCA-ATAACTCAAGAAGAGTAAG-AGGCAAATTGATAA--TTTATGTCCG-GTC--------AAAG-CACCCAGT-AA-AAGTTT-CAGTATTc
gi|6 : tgtGAA---GAGAG-----AC-A-A-GGAAGAA------ATA---------G--GTAA--ACCAAAATAAAG------------T-AGGA-A-TAAG----AAAAGAAAGAATATAT---ATGCTACGATAT-ATAAA---T-A-AAGATAA-------AGC---ATCAGTGGTAGAAGC----TTATATAAGGGATTGCAGTGGGGTATTG----AGTGCAATTATC-CAGTCTGATAAtataatgtgaa
gi|6 : GC-----GGTAGTAATCAGCTGCAATTATC-CTG---AATAATGGTGATGCACCTTATTCTTTCAACTTAGCGATA-GAACTTAGTTCAGGAACACAGTGCAAGTaaaacaccttctcctatcatcgtttcctgatgaccattatgagcagggcggtagtaatcagctgcaattatcctgaataatggtgatgcaccttattctttcaacttagcgatagaacttagttcaggaacacagtgcaagt
gi|7 : gaagagagacaaggaagaaataggtaaaccaaaataaagtaggaataagaaaagaaagaatatatatgctacgatatataaataaagataaagcatcagtggtagaagcttatataagggattgcagtggggtattgagtgcaattatccagtctgataaaaaacaccttctcctatcatcgtttcctgatgaccattatgagcaggTATGA-G--CCCATGTCTTCCAAACACTGATGTGACTCGGACTAATGGAATA--GTCCGAAATCCTGTTTACCCCTATTT-GAA-TGGGTATAGCCCTTTGCTATATAAGAAGCTGCAG---AGGC-----AGT--ATCAAG----C------ACTTGTTAGTATGACGG--C--CGAA---GA-AGTA---GCAA-A-GAAAACG------AAA---------A--GTAA--A------TTAA-------------T---AA-A-GAATTGTGAAACGGAAG------TGAAAGGTTAGGGT---TGAAA---T-ATAAGACACTGGTA-AAGTTAAACCA-TGGAA
gi|8 : aatgagtaaggaacgatacAATGAACCCATGTCTTCCAAATACTGATGTGACTCAGACTAATGGAATA--GTTCGAGATCCTGTTTACCCCTATTT-G-AATGGGTATAGCCCTTTCCTATATAAGAAGCTGC-----AGAA-----GCCTTATCAAT----C------ACTTGTTAGTCTGACAG--C-T-GAA---GA-AGCAGCAGC-GAA-GAAAAAG------AAA---------G--GTAA--A------TTAA-------------T-A-AA-G-AATT----AAAGTGAA----------------ACGGAAT-TGAAAGGTT-A-TGGTTAATA-TATAAGC-----CACTGGTAAA-GTTAAACCA----AGGAATTGttgtg
gi|9 : aaTGACTCAGTACCAGTCAACGCTTGGATCTAGAGAAAT-A-A-G-ATA--AT-TCATGTTGGT-GATCAGGTAA------TATA-GCCA-ATAACTCAAGAACAGTAAG-AGGAAAATT-ATAAA-TAAATGTCCCTATC--TCTTGTAAAG-AACCCAGT-GACACGTTA-CA-TGTTGGTGACAGCCGGTCAAGGGATAGGTGACAAATACTAGTATATACACGAAATCTTGCT---------TTGATTAGTT-------CATTTGCAGA---GTTATGCTTAGAA
blockSeqs : . T AAC A . A . G T TAGTCA TAGTCT AGTATGA AT G AGA G CAGCA AAA T GACCTA CACGCAAAAA TA CCAAAA GCTAG AT TGTG GAATATAT A GGT . T TGG T TAA A TAAA TATA AGTGG ATCA T . TCT G TCTTTCA A . C . ATCT TAGTGT AG G C TT C . G G C A A T G A C TCTT T T G T T A CA GGTGACAAATACTAGTATATACACGAAATCTTGCT A T GCTGTAGT ACGCA A . A T TC .
blockSeqs : . T T G . A . A T GCCTT CT AGTCTGA . . . . TA AAA T . G . . GTTAG TA . GTGAA . . . . TA . TA . . . . . A . . G . T . A . AT GAAGG . . . GT T . . A . C T . . A C TC . . G . G A TC TTGAAAGATAGCTAATGTTATTTACTACACG G T TAGG GAG .
blockSeqs : . T A A . A . G T AGT CT . . . . . . GAA A . G . . ATTA A . T . . . . T . . . . . . . A . . A . T . C . AT GAAGG . . . C T . . C . A T . . A C CC . . G . . T CA GGGTACATACGTGATTATT A A TATC GT .
blockSeqs : . T T G . . . T . A C . . . . . . GA T . G . . GTAG T . T . . . . T . . . . . . . A . . A . A . C . GT TAGA . . . C C . . A . A A . . . A TC . . G . . A . TGAGTGTACT . . C
blockSeqs : . C T . . . T . A C . . . . . . GA A . G . . GAG A . C . . . . A . . . . . . . T . . C . T . . . AT TAGA . . . A T . . C . A A . . . C TC . . G . . A
blockSeqs : . . T . . . . . . . GA C . A . . TA A . T . . . . T . . . . . . . A . . T . . . T TAAG . . . C C . . C . . . . . . T T . . . . . G
blockSeqs : . . . AA A . G . . T G . . . . . . . . . . . A . . . . . . . . C G . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ****** ** CT******** ******* *** GA*** G*********** GTTAG************ A** ***** *** AT** TAAGG*** ****** GGAATANNCGATTACT**************************** TAC*****
originalCons : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTT-GAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGACGTGTT-------CGG--C-TCGAA---GA-AG-----AC-G-A-GAAAGNA------ATA---------G--GTAA--A------TAAAG------------T-AGAA-A-AAAT----AAAGGGAA-------T---AGGCTAGGGTAG-GGAAA---T-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAAT-A-G-G-AAA--AT-T-ATATTG-C-GATCAGCTTA------TATA-ATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATC--TCTTGTAAAG-AACCCAGT-AACACGTTA-CA-TATTGGTGACAGTCGGTCAAGGGATAGGTGA--------AGTACATACGTGA----TTATT---------TTGATTNATT--TATAGNATTTGTA-A---ATT-TGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
finalCons : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTT-GAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGTCT--------GACGTGTT-------CGG--C-TCGAA---GA-AG-----ACGA---GAAAGNA------ATAG-----------GTAA--A------TAAAGTTAG------------AAA--AAAT----AAAGGGAA-------T---AGGCTAGGGTAG-GGAAA---T-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAATAAGG---AAA--AT-T-ATATTG-C-GATCAGCTTA------TATA-ATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATC--TCTTGTAAAG-AACCCAGT-AACACGTTA-CA-TATTGGTGACAGTCGGTCAAGGGATAGGAATANNCGATTACT----------------------------TTGATTNATTTAC-----ATTTGTA-A---ATT-TGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 222222 111 1 3333333333 2222222222 4444444 111 11111111111 111111 222222222 111111 22222222222222 11 1111 333333333333 111 111 1111 1111 22222 1111111 111 111111 1 1 22222222222222222222222222222222222 22222 55555555555 222222 1 11 1 11 222
lowQualScore : 0 333333 1 000 1 77 0 5 6 1 3 3333333333 5555555555 0 2222222 77 5 777 5 44444444444 5 1 444444 000000000 66 66 444444 77777777777777 66 5555 0 333333333333 777 5 5 555 5 555 5 2222 2222 11111 9999 0 5 4 777 3 6666666 0 3 0 000 0 2 6 9999 0 1 66666 5 777 3 222222 5 1 5 1 6 5 5 1 2 0 1 0 5 5 2 5 0 2 5 1 0 11111111111111111111111111111111111 00000 3 3 33333333333 0 333333 0 0 88 1 5 88 111
lowQualScore : . ...... . ... . .. . . . . . .......... .......... . ....... .. . ... . ........... . . ...... ......... .. .. ...... .............. .. .... . ............ ... . . ... . ... . .... .... ..... .... . . . ... . ....... . . . ... . . . .... . . ..... . ... . ...... . . . . . . . . . . . . . . . . . . . . . ................................... ..... . . ........... . ...... . . .. . . .. ...
lowQualScore : 8 000000 4 333 7 99 7 5 7 0 2 5555555555 7777777777 7 9999999 99 7 555 0 00000000000 0 0 444444 000000000 99 99 444444 99999999999999 99 6666 2 555555555555 666 0 0 555 0 666 7 1111 1111 22222 4444 1 1 4 888 4 2222222 7 0 1 000 7 5 7 0000 1 3 44444 0 111 7 888888 7 0 7 4 6 0 7 4 4 1 4 1 0 0 5 0 0 4 0 8 8 22222222222222222222222222222222222 00000 8 8 00000000000 8 555555 0 8 55 0 5 00 000
consensus : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTT-GAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGACGTGTT-------CGG--C-TCGAA---GA-AG-----ACG-A-G-AAAGAA------ATA---------G--GTAA--A------TAAAG-----------TTAGAAT-AAAAT----AAAGGGAA-------T----AGGCTAGGGTAG-GGAAAT-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAATA-A-GNAAAAT-TATATTG-C-GATCAGCTTA------TATA-ATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATCTCTTGTAAAG-AACCCAGT-AACACGTTA-CA-TATTGGTGGCAGTCGGTCAAGGGATA--G--GATAC----------ATACGTGA--T---TTACT-----TTGATTNATT----TAGC---ATTTGTA-A---ATT-TGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
Reference ( family-3981 ) : TGATGATTAATAGTTA------TGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATAATATTGGAATG--GTCCGAGGACCTGTTCACCCCTCTTT-GAAATGGGCATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGACGTGTT-------CGG--C-TCGAA---GA-AG-----ACG-A-G-AAAGNA------ATA---------G--GTAA--A------TAAAG-----------TTAGAA--AAAAT----AAAGGGAA-------T----AGGCTAGGGTAG-GGAAAT-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTG----GGTGCAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAANAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAAACCCGA-GATAAGTAACTCGGTACCAATCAACGCTCGGAT--AGAGAAATA-A-GGAAAAT-TATATTG-C-GATCAGCTTA------TATA-ATNA-ATAACTCAAGNAGAGTAAG-AGGAAAATT-ATAAAATATATGTCCCCATCTCTTGTAAAG-AACCCAGT-AACACGTTA-CA-TATTGGTGACAGTCGGTCAAGGGATA--G--GA-------------ATANNCGA------TTACT-----TTGATTNATT----TA-C---ATTTGTA-A---ATT-TGTTTTGAACCCTAGCCATTGTTGCGCGCNCAATGTACATTCAACACCGTAACCAAGTTCAA
gi|1 : TGATGATT--TAGTTAGTATATTGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGAATTCTAATATTAGAATGAGGTCCAAGGACCTGTTC-CCCCTCTTTTGAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----CAGTCTGATGTGTTT------CGG--C-TCGAAAGAGA-AG-----ACG---G-AAAAAA------ATA---------GACGCCA--A------TAAAGGGTAAAACAAATTAGAAT-AAGAT----AAAGATAA-------T----AGACTAGGGTAG-GGAAATTA-AAGATAAA--TA-AAGC---ATCAGTG-AAGA-GC----TTA----AGGAATTGCTAC--AGTACTG----GGTGCATTTATCTCTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGATACCCAGTCACTACTACACTACCCTCGGTGATTAGAAACCCGGCGATAAGTAACTCGGTACCAATCAA-GCTCAGA---AGAGAAA
gi|1 : aataactgc-A-GTAAAAT-TATATTG-C-GATCAGCTTACTAGCATATA-ATAA-ATAACTCAAGTAGAGTAAG-AGGAAAATT-ATAAA-TATAAGTCCCCATCTCTTGTAAAG-AACTCAGT-AACACGTTA-CA-TTTTGGTGGCAGTCGGTCAAGGGATA--G--GGTAC----------ATACGTGA------TTATT-----TTGATTAATT----TA-TAGGATTTGTA-A---ATT-TGTTTTGAACCTTAGTTATTGTTGCGTGCTCAA-GTATAT--AACACCGTAACCAAGTTCAAnnnnnnnnnnnnnnnnnnnnnnnnnaaaattttagagtaaaattatattgcgatcagcttactagcatataataaataactcaagtagagtaagaggaaaattataaatataagtccccatctcttgtaaagaactcagtaacacgttacattttggtggcagtcggtcaagggatagggtacatacgtgattattttgattaatttataggatttgtaaatttgttttgaaccttagttattgttgcgtgctcaagtatataacaccgtaaccaagttcaagt
gi|10 : aataactgctgatgatttagttagtatattgtataatgtccatgtcttccaaacgcagaggtgaattctaatattagaatgaggtccaaggacctgttccccctcttttgaaatggacatggaccagtagtataaaagagcctgcagttgagaaaatcagtcagtctgatgtgtttcggctcgaaagagaagacggaaaaaaatagacgccaataaagggtaaaacaaattagaataagataaagataatagactagggtagggaaattaaagataaataaagcatcagtgaagagcttaaggaattgctacagtactgggtgcatttatctctggataagggtgaggcaccctgtacttagcaaaaggaacttggctcgggaacacggtgcagatacccagtcactactacactaccctcggtgattagaaacccggcgataagtaactcggtaccaatcaagctcagaagagaaannnnnnnnnnnnnnnnnnnnnnnnnaaaattttagAGTAAG-AGGAAAATT-AT-AAATACATGTCCCCATCTCTTTT----------GGT-GGCAC-----------TG-----AGCTGGTGAGGGGATA--G--GGTAC----------ATACGTGA------TTATT-----TTG-----TT----TAGG---ATTTGTA-G---TTC-TGTTTTGGACCgt
gi|11 : TACCAGTCAACGCTCG-------------------------TATATGG-TTGATCAACT-A-------ACA-GGGA-AAAACTCAAG-----TAAG-AGGAAAATT-ATAAA-TAGATGTCATCATCTCTTGTAAAG-AA-CCAGT-AAAAC--TATCA-TATTG
gi|12 : AGGTACCCAGCC---AATACACTGCCCTCTGTAATTAGAAACCCGA-GCTAAGTAACTCGGTACCAATAAACTCTCGGAT--AGAGAAAGA-A-GGAAAAT-TGTATTG-C-GATCAGTTTG------TA
gi|13 : CAGTGTA------TATA-ATAA-AC--CTCCAGAAGAGTAAG-AGAAAAAT-----AAATATATG--CCCATCT-TTGTAAGA-GACTCAGTTAACACGTTA-CA-AAT
gi|14 : ACTG----GGTGCATTTATC-CTG---GATAAGGGTAAGGCACCCTGT-------ACTTAGCAAAGGGTACTTGGCTCGGGGACACGGTGCAGGTACCCAGTC---ACTACACTAatcattgaagagagtg
gi|15 : AATATAT---CTAATCCCT-GTATAGTACCCCATT-AACACGTTA-CA-TTTCGGTGGCAGTTTGTCAAAG--T------GA-------------GTG------------TACT-----CTGATTTATT----TATC---ATTTGT
gi|16 : TGATGGTTAATAGTTA------TGTATA-------CATGTCTTCCAAACGCAGAAGTGATTTATAATATTGGAATG--g
gi|2 : aatttgTGATGATTAATAGTTA------TGTATAATG--TTCATGTCTTCCAATCGCAGAGGTGATTTATAATATTGGAATG--GTCCAAGGACCTGTTCATCCTTCTTT-GAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAA-----A----ATCAGT----C----TGATGTGTT-------TGG--C-TCGAA---GA-AG-----ACG-A-G-AAAGTT------ATA---------G--GTAA--A------TAAAG-----------CTAGAA--AAAAT----AAAGGAAA-------T----AGACTAGGGTAG-GGAAAT-A-AAGATAAT--TA-AAGC---ATCAGTGGAAGA-GC----CTA----AGGAATTGC-----GGTACTC----GATGTAATTATC-CTG---GATAAGGGTGAGGCACCCTGT-------ACTTAGCAATAGGAACTTGGCTCCGGAACACGGTGCAGGTACCCAGTC---AATACACTACCCTCTGTGATTAGAAACACAA-GATAAGTAACTCAATACCAATCAACGCTCGGAT--AGAG-AATT-A-GAAAAATGTATATTG-C-GATCAGCTTG------TAGA-ATCA-ATATCTCAAGTAGAGTAAG-AGGAAAATT-ATAAAATATACGTCCCCATATCTTGTAAAG-AACCCAGT-AACACGTTA-CATTACTATTGATCATTGG--AAGGGGTATTG--AAAG-----------ATAGCTAATGTTATTTACTACACGTTGGTCTATTGCTGTAGT---ATT--TA-ACGCATT-TGGGTTGACTCCTAGCCA--GTTATGCATACAATGTACATTCAACATTGTAACT---TTCAA
gi|3 : GATGATTAATAGTTA------TGCATAATG--ACCATGTCTTCCAAACGCAGGAGTGATTTATAATATTGGAATG--GTCCAAGGACCTGCTC-CCGCTCTTT-GAAATGGGCATGAACGAATGGTATAAAAGAGCTTGCAGTTGAGAA-----A----ACCAGTTAGTC----TGATGTGTT-------CGGATCGTCGAA---GA-AG-----ATG-A-G-AGAGTA------GTA---------G--GTAA--A------TAAAA-----------TTAAAA--TAAAT----AAAGAGAA-------T----AGGCTAGGGTAG-GAAAAT-A-AAGATAAT--CA-AAGC---ATCAGTCGAAGA-AC----CTA----AGGAATTGC-----AGTACTG----GGTACAATTATC-CTG---GATAAGGGTGAAGCACTCTGT-------ACTTa
gi|3 : atatactggTTGC-----AGTACTG----GGTACAATTATC-CTG---GATAAAGGTGAAGCACTCTGT-------ACTTATCAATAGGAACTTGGCTCCGGAACACGGTTCAGGTACCCAGTC---ACTACACTACCCTCTGTGATTAGAGATCCGA-TATAAGTAACTCGGTACCAATCAACGCTCGGGT--AGAGAAATAGA-AAAAGAT-CGTATTG-A-GATCAGTTTA------TAT--ATAACATAACTC-AGTAGAGTAGGTAGGgcnttgcagtactgggtacaattatcctggataaaggtgaagcactctgtacttatcaataggaacttggctccggaacacggttcaggtacccagtcactacactaccctctgtgattagagatccgatataagtaactcggtaccaatcaacgctcgggtagagaaatagaaaaagatcgtattgagatcagtttatatataacataactcagtagagtaggtaggcg
gi|4 : atatactgggatgattaatagttatgcataatgaccatgtcttccaaacgcaggagtgatttataatattggaatggtccaaggacctgctcccgctctttgaaatgggcatgaacgaatggtataaaagagcttgcagttgagaaaaccagttagtctgatgtgttcggatcgtcgaagaagatgagagagtagtaggtaaataaaattaaaataaataaagagaataggctagggtaggaaaataaagataatcaaagcatcagtcgaagaacctaaggaattgcagtactgggtacaattatcctggataagggtgaagcactctgtacttgcnTGATGATTAGTAGTTA------AGTATAATG--TCCATGTCTTCCAAACGCAGAGGTGATTTATGATATTAGAATA--GTCCAAGGACCTGTTC-CCCCTCTTT-GAAATGGACATGGACCAGTAGTATAAAAGAGCCTGCAGTTGAGAATAGTCA----GTCAGT----C----TGATGTGTT-------CGG--C-TCGAAAGAGA-AG-----ACG-A-A-AAAGAA------ATACACGCAAAAA--GTAA--A------TAA-------------TGAGAA--TAAAT----AAAGAGAA-------C----AGACTAGGGTAG-GGAAAT-A-AAGATAAA--TA-AAGC---ATCAGTGGAAGA-GC----TTA----AGGAATTAC-----ATTACTG----GGTGCATTTATC-TTG---GATAAGGGTGACGCACCCTGT-------ACTTAGCAAAAGGAACTTGGCTCGGGAACACGGTGCAGGTACCCAGTC---ACTACACTACCCTCGGTGATTAGAAACCCGG-GATAAGTAACTCGGTAGCAATCAACGCTCAGAT--AGAGAGATA-GTGTAAAAT-TATATTG-C-GATCAGCTTA------cg
gi|5 : atattgGTGTC-------CAG--C-TCAAA---GA-AA-----AAA-AAG-AAAGTAGACCTAATA---------G--GTAATAA------TAAAG-----------TTAGAAT-AAAAT----TAAAGGAT-------T----AGGGTAG--TAGAGGAAAT-A-AATATAAT--TA-AA-CTA-ATCAGTGGA-GT-GC----CTA----AGGGATTGC-----GGTACTG----G-TGCA-TTAT------------------------CCTGG-------A--TA-----AGGAACTTGG-TCGG-AACATGGTAATGGTACC-AG-C---AATAAACTGC--TCTGTAATTAGAAAC--GA-GCTAAGTAAATCG-TAACAA--AAC--TCGG-T--AGAGAAAGA-A-GGATAAT-TGTATAG-C-GATCAG-TTG------T-TAGATCA-ATAACTCAAGAAGAGTAAG-AGGCAAATTGATAA--TTTATGTCCG-GTC------AAAG-CACCCAGT-AA-AAGTTT-CAGTATTc
gi|6 : tgtGAA---GAGAG-----ACA-A-G-GAAGAA------ATA---------G--GTAA--ACCAAAATAAAG-----------T-AGGA--ATAAG----AAAAGAAAGAATATAT----ATGCTACGATAT-ATAAAT-A-AAGATAA-------AGC---ATCAGTGGTAGAAGC----TTATATAAGGGATTGCAGTGGGGTATTG----AGTGCAATTATC-CAGTCTGATAAtataatgtgaa
gi|6 : GC-----GGTAGTAATCAGCTGCAATTATC-CTG---AATAATGGTGATGCACCTTATTCTTTCAACTTAGCGATA-GAACTTAGTTCAGGAACACAGTGCAAGTaaaacaccttctcctatcatcgtttcctgatgaccattatgagcagggcggtagtaatcagctgcaattatcctgaataatggtgatgcaccttattctttcaacttagcgatagaacttagttcaggaacacagtgcaagt
gi|7 : gaagagagacaaggaagaaataggtaaaccaaaataaagtaggaataagaaaagaaagaatatatatgctacgatatataaataaagataaagcatcagtggtagaagcttatataagggattgcagtggggtattgagtgcaattatccagtctgataaaaaacaccttctcctatcatcgtttcctgatgaccattatgagcaggTATGA-G--CCCATGTCTTCCAAACACTGATGTGACTCGGACTAATGGAATA--GTCCGAAATCCTGTTTACCCCTATTT-GAA-TGGGTATAGCCCTTTGCTATATAAGAAGCTGCAG---AGGC-----AGT--ATCAAG----C------ACTTGTTAGTATGACGG--C--CGAA---GA-AG-------T-A-GCAAAGAA------AAC---------G--AAAA--G------TAAAT-----------TAATAA--AGAATTGTGAAACGGAAG------TGAA-AGGTTAGGGT---TGAAAT-ATAAGACACTGGTA-AAGTTAAACCA-TGGAA
gi|8 : aatgagtaaggaacgatacAATGAACCCATGTCTTCCAAATACTGATGTGACTCAGACTAATGGAATA--GTTCGAGATCCTGTTTACCCCTATTT-G-AATGGGTATAGCCCTTTCCTATATAAGAAGCTGC-----AGAA-----GCCTTATCAAT----C------ACTTGTTAGTCTGACAG--C-T-GAA---GA-AGCAGCAGCGAA-G-AAAAAG------AAA---------G--GTAA--A------TTAAT-----------AAAGAATTAAAGTG---AAACGGAA-------TTGAAAGGTTATGGT----------------TAATA-TATAAGC-----CACTGGTAAA-GTTAAACCA----AGGAATTGttgtg
gi|9 : aaTGACTCAGTACCAGTCAACGCTTGGATCTAGAGAAATA-A-GATAATT-CATGTTGGT-GATCAGGTAA------TATA-GCCA-ATAACTCAAGAACAGTAAG-AGGAAAATT-ATAAA-TAAATGTCCCTATCTCTTGTAAAG-AACCCAGT-GACACGTTA-CA-TGTTGGTGACAGCCGGTCAAGGGATA--GGTGACAAATACTAGTATATACACGAAATC--TTGCT-----TTGATTAGTT-------C---ATTTGCAGA---GTTATGCTTAGAA