lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 4 777777777 1 1 22 1 2222 222 22222 1 1 1 2 77777777777777777 77777777 1 111 1 222 66666666666666 222 1 33333333 11 1 99999999999999999999 11 22 1 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 1 4444 2 88888888888888 2 555555555555555555 11 1 11 22222 4444 4 11 444444 11 5555555555555555555555 22 4444444 3 2 4444 111 9999999999999999999999999999999999999999999999999999999999999999999 333 2 22 1111 3333333333 88888888888888888888888888888888888888888888888888888888888888888888888888 33333 111 2222 777777777777777777 1 11111111 88888888888888888888888888888 333333333333333333 1111 2 222 22222 44 22222 22222222222 11 22222222222222222222222222222222222222222222222222222222222222 222 1111 4444444 1 1 22222222222222222 1111111 11 2 333333333333 11 3333333333333333333333333333333 22 444444
lowQualScore : 55 0 777777777 5 5 77 5 3333 333 99999 3 3 3 6 66666666666666666 77777777 6 999 7 7 6 888 7 55555555555555 333 6 3 88888888 1 77 3 00000000000000000000 9 55 33 3 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 5 5 8888 0 88888888888888 0 3 888888888888888888 88 3 88 99999 9999 0 44 7 222222 66 5555555555555555555555 55 7 3 2222222 1 0 2222 8 444 6666666666666666666666666666666666666666666666666666666666666666666 000 7 3 00 7777 4444444444 00000000000000000000000000000000000000000000000000000000000000000000000000 6 33333 111 0000 1 5 333333333333333333 4 4 9 66666666 88888888888888888888888888888 4 4 4 4 666666666666666666 4 3333 8 555 888 55555 66 11 88888 5 5 99999999999 5 6 44 66 5 5 99999999999999999999999999999999999999999999999999999999999999 3 1 4 111 55 4 0 4 5555 55 3333333 0 6 0 3 3 3 555 99999999999999999 6 44 3 777 3 8888888 0 22 1 3 555555555555 4 777 4 33 4 4 1111111111111111111111111111111 666 3 3 88 3 55 3 000000 88 4
lowQualScore : .. . ......... . . .. . .... ... ..... . . . . ................. ........ . ... . . . ... . .............. ... . . ........ . .. . .................... . .. .. . . ...................................................................................................................... . . . .... . .............. . . .................. .. . .. ..... .... . .. . ...... .. ...................... .. . . ....... . . .... . ... ................................................................... ... . . .. .... .......... .......................................................................... . ..... ... .... . . .................. . . . ........ ............................. . . . . .................. . .... . ... ... ..... .. .. ..... . . ........... . . .. .. . . .............................................................. . . . ... .. . . . .... .. ....... . . . . . . ... ................. . .. . ... . ....... . .. . . ............ . ... . .. . . ............................... ... . . .. . .. . ...... .. .
lowQualScore : 55 0 000000000 5 0 55 5 8888 333 33333 3 3 3 7 00000000000000000 00000000 0 333 3 3 0 000 3 33333333333333 333 7 3 77777777 0 00 3 77777777777777777777 0 77 33 3 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 5 5555 0 00000000000000 0 0 777777777777777777 33 3 33 00000 0000 0 77 3 777777 55 5555555555555555555555 55 0 2 2222222 5 0 0000 0 000 9999999999999999999999999999999999999999999999999999999999999999999 000 3 7 77 3333 3333333333 33333333333333333333333333333333333333333333333333333333333333333333333333 7 77777 777 7777 0 0 888888888888888888 4 4 6 11111111 33333333333333333333333333333 4 4 4 4 888888888888888888 4 4444 9 444 888 44444 99 99 22222 0 0 88888888888 0 0 55 99 0 0 00000000000000000000000000000000000000000000000000000000000000 6 8 0 444 55 0 8 0 0000 00 0000000 0 7 0 3 3 3 888 44444444444444444 0 66 3 222 3 7777777 4 77 8 3 333333333333 0 000 0 55 0 0 3333333333333333333333333333333 444 6 6 33 6 00 6 000000 66 4
consensus : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGCTATTAATTGTATGGACAC---AGAAT----GCAA-GAGC-TTTT-CTTGAAATGTTTTC------A-AACAA----AACACCCCCCCCC-----AGAAAAAT-AAACA-AAATATCAGAAAC-AAAACT-TATAAATCCAG-T----TG---GT-GTA---TCATTTC-TAGA-TCCGC--CCTCAAAATCCCGTG-AACTACA--------ATCA------TAATATTTA-GAGTA-TCTTT-TCTGAGGCTCATATCTTTGGGGTGGAGGGGTGTTATAGGTATATTGATGAAGA-TGGGATTGTTNAGG-GTACATTACAAATG--TCTCCGTTCTAAAAGTGTGGGTATAT-AT-----TATATAAAGTNCTCCTCGATTACACTT-CTTCTATTTGAGCATGNNNGATCTACAGCTCGANTGTACAAAA-TTCAA-ACTTCCT-A--GTA--TATACGATGAT-CGTTTGAT--GAACGCT-AAT-CTAC-A--TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAANC--C----AGGTNAA--T---TATAT-TTCAAGTTCAGTG----G-TACCACAG-ATCAAATGTTTTAAAATTT-ACTAGTAC---TTTTC---GCATTTNC-CTCCATT--TTAT--TGATTTGG-ATG-T--TTT---T-----AA-----TC--TTAACAA-C-ATGGTT-CAATTT-AGTAATTAA-TT-TGC-CGTTCA--ATTATTTC------G---TGAGATCAG-ATG-ATTTT-C---TATGACAG---GTGGC-TTAA-AAAGGAG-AT----CA-GTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTG-AAATGG-ACAACAATTAATT----TGTAGTCAAC-AC-TTATATTTCC--------CCAGCTG------------------T-T--CG----TAT-TG-TA-AGTTGC-T-T-------------TGTATTG-TATT-C--TCAT-AGAAATA-ACTGGC---AAG-A--CG--CAGA-TAGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-T-AAATGGGC-TTNTNTTCGCNTCGTNTTANNAGNTTGGCCCCNCCCNCACCCCTCCCCC-CA-AATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TGTT----C--AGTCT--AAA-AATCCC-G-G-CGAA-A-A-A---TT---TAAA---------ATTCA--A-TTA-T-TT-T-A-TT--GAATCATAATTT-TT-TTTN-------CTGACAT-A---AT-CG--T-T-GG----A--TA-T--A--ACAA-CA-AATC---TT---CC-GAC-TGAAA--TCCA-TA--TTT-TAT----AAC--GCAG-TAGA
Reference ( gi|2 ) : TGTGACCTGGG-ATAATTCGCGACCAGTAAATTGCCCGC--TTAATTGTATGAACAC---AGAAT----ACAA-GAGC-TTTT-CTTGAAATG-TTTC------A-AACAAA---AACACCCCCCCCCCCTAAAAAAAAATAAAAAA-AAATATCAGAAACAAAAACT-TATAAATCCAGTT----TG---GG-GTA---TCATTTC-TAGATTCCGCAACTTCAAAATCCTATG-AACTACA--------ATCA------TAACATTTGCGAGTAATCTTT-TCTGAGGC--A-ATCTG-GGGGTGGCGGCCCGT-ATAGATCTAT--ATGAAAATTGGGA--GTTATGGCGTACAT-ACAAATGCTTCTCCGTTCTAAAAGTGCGGGTATATGATACATGTATATATAGTGCTCCTCGATTACACTTTCTTCT-TTT-ACCA-GATAGA--TACA-CTCGAATGTACAAAA-TTCAA-ACTTTCTAAAAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTACCA--TGATACAAGTTAAAATTTTGAC-ATTCCAC-GTGGAAA---C----AGGCTAA--T---TATAT-TTCAAGTTTAGTG----GTTACCACAGCATCAAA-GTT----AATTT-ACTAGTAC---TTTTCAAAGCAGTTCCTCTCCATT--TTAT--TGATTTGG-ATGTTATTTT---T-----AA-----TC--TTAACAA-C-ATGGTTTCAATTT-AGTAATTAA-TT-TGC-CATTCA--ATTATTTC------GCT-TGAGATCAGCGTGCATTTT-C---TAT-ACAG-A-GTGGCCTTAATAAAGGAGCAT----CAGGTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTG-AAATGGTACAACAATTAATTGTTATGTAGTCAAC-AC-TTATATGTCC--------CCAGCTG------------------T-T--C-----TAT-TG-TA-AGTTGC-TGTAGG----CT--TATATATTG-TATT-C--TCATCAGAAAAATACTGGC---AA--A--CG--CAG--TAGTT---AGGT-CT-AC-----AC--C-G-CAAGCGT-AACC--AAC-T-AAATGGGC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC-CA-ATTTCATTACGCCTATAAACA-ATTATG--TTGAA-AAAAG-TGTT----C--AGTCT-TAAACAATCCC-G-G-CGAA-A-A-A---TT---TAAA---------ATTTA--A-TTA-T-TT-T-A-TT--GAATCATAATTTGTT-TTTC-------CTGACAT-A---AT-CG--T-T-GA----A--TA-T--A--ACAA-CA-AAAC---TT---CC-GAC-TGAAAT-TCCA-TA--TTT-TGA----AAC--GCAG-TAGA
gi|3 : TGTG--CTGGGGATAAT--GGGAC-GGTAAATTGCC-GC--TTA-TTGTATGA-CAC---AGAAT----ATAA-GAGT-TTTT-CTTGAAATGTTTTC------A-AAC------AACACCCCCCCCC--------AAAAT-AAACA-AAATATCAGAAAC-AAAACTATATAA--TCAG------TG---GGAGTA---T-ATTTC-TAGA-TCCG---CCTCAAAATCAT-TG-AACTACA--------AT-A------TAATATTTG-GAGT-ATTTTT-TCTGA-GC----ATCT--GGGGTGG------------GGTATAT--ATGAAAA--GGGA--GTTCAGG-GTACAT----AATG--TCTCC-TTCT-AAAGTG-GGGTATAT-AT-----TATATA-AGTACT-CTCGA-TACA----CTTCT-TTT-AGCATGCAAGATCTACA-CTCGAATGTACAAAA--TCAA---CTTCT-ACAGTA--TATACAATGAT-CATTTGAT--GAACGCTGAAT-CTAC----TGATA-AAG-TAAAATTTTGAC-AT--CAC--TGGAACT--C----AGG-TAA--T---TATA--TTCAAGTTTAGTG----G-TACCACAG-ATCAAATGTT----AATTT-TCTAGTAT---TTTCC---GCA-TT--TCTCAATT--TTA---TGATTTGG-ATG----TTT---TACACGAA-----TC---TAACAA-C-ATGG-TTCAATTT-AGTATTAAA-TT-TG--CATT----ATTATTTG------G---TGAGATCAG-ATG-A-TTT-C---TAT-GAAG---GTGGC--TAA-AAAGGAG-AT----CA-GTA-ATAAATTCCGTGT---ACACACAGTA
gi|11 : cattaattgtcatgatatatgcttgcaaatattaggattaacagtacatccttgataaaaataaattgataaaacagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGTGGCCTGGGGATAAT--GGGAC-GGTAA-TTGCCCGCTATTAATTGTA--GACAC---AGAAT----GCAA-GAGCTTTTT-CTTGAAATGTTTTC------A-A--AAC---AACACCCCCCCCCC----AAAAAAATAAAACATAAATATCAG-AACAACAAC--TATAAATCCAG-T----TG---GT-GTA---TCATTTC-TAGA-TCCGCTACTTCAAAATTCCATG-AACTATAATATATAGATCAAAATTTTAAAATTTACTAGTA--CTTT-TC
gi|1 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnACACGTAAGAATCATCGCAATGAGC-TTTTTCTTGAAATG-TTTTTGTTCTATAACAAACCCAACATATCCCCA----AAAGAAAAGTTAAAAC-AAGTATC-GAAACTAAAACT--ATAAATCCAGTTGGTGTGTTCGT-GTACCTTCATTTCATAGAT-CCGC--CCTCAAAATCCAGTGGAACTT-----------TTA------TAGTATTTAGGGATATTCTCTATCTGAGGCTCATATCTTTGGGGTGGAGGGGTGTTATA----TATTGATGAAG--TGGGATTGTTA--G-GTACATTACAAATG--TCTCCGTTCTAAA--T-TGGGTATA----------AT-TAAAGTTTTCCTCGATTACACTT-CTTCTATTTGAGCA-AGTC----TACAGCTCGACTGTACAAAAATGCAATACTTCATTAA-GTCCCTCTACAATGCTTCATTTGATTCGAACGCG-AATTCTAC-A--TGATA-AAGT-AAAATTTTGACTAT--CACTGTGGAAC---CCTTCAGATAAG--T---TATAT-T-CAAGGTT-GTGAGACGT-ACCTCAGTATCAAATGTTT---AATTTTACAAGTACCTGTTTTC---GCCATTTC-CTCCATTATTTATGTTGAAGTGA-TTGATATTTTACAC-----AA-----TCCCTTAACAAGCGATGGTT-CAATT--AGTAATTAAATTATGCATGTTCAGGATTATTTCCTTACGGCTGTACGATCAGTATG-ATTTT-CGTCTATGACAG-CTGTGGC-TAAAAAAAGGAG-ATACTACAG-TATATTA----CGTGTTACACACGCAGTAATATTCTCAGTGAAAATGGAAAGACA---AATT----TGTAGTCAAC-AC-TTATATTTCC--------C--GCTG------------------TAT--CG----TATGTG-TA-AGTTGC-T-TG-------------ATATTGTTATTAG--TCATAAG-AATATACTGGCCAAGA--A--CG--CAGA-TAGTT---GAGTGCT-ACAACTAAC--CAG-CGAACGA-AACT--AAT-C-AAc
gi|14 : tgcacTGTACAATG-TT-AG-ACTT-CTAA--GTA--TATCCGATTAT-CGTTTGAT--AAATGCT-G---CTACAACTTGATA-AAGTTAAG--TTTAA--ACTTCAC-ATGGAAA---C----CTGCTAAACTGCATGTATATTCAAGTTCAGTG----G-TATCACCG-ATCAAA-cagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccccccaaatcatacgcctataaacaatagtcgaaaaaagtgtttcagtctaaaatcccggcgaagaagatttaaattctaatcatattttttttactgacataatcgtttgaatattaataaccacagactctttcctgactgaaatcttcttgttataacgcgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|18 : gatctacacaatatCAC-GTGGAAACCTC----AGATAAA--T---TATA--TCCAAGTTCAGTG----G-TACAACAG-ACCAAATGTT----AATTT-ACCG-------TTTCC---GCATTTA--CTTCGTT--TTA---TGATTTGG-tgctgtacaatatattttccgtattttttagatgtctttat
gi|11 : catATCAAA-ATTTTAAAATTT-ACTAGTAC---TTTTC
gi|13 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtggcctggggataatgggacggtaattgcccgctattaattgtagacacagaatgcaagagctttttcttgaaatgttttcaaaacaacaccccccccccaaaaaaataaaacataaatatcagaacaacaactataaatccagttggtgtatcatttctagatccgctacttcaaaattccatgaactataatatatagATCAAA-ATTTTAAAATTT-ACTAGTAC---TTTTCC--GCATTTCC-CTC-ATT--TTAT---GATTTGGGATGTT--TTT---T-----AACCGAATC--TAAACAA-CTATGGTT-CAATTTTAGTAATTAA-AT-TGC-ATTTCA--ATTATTTC------G-G-TGAGATCAG-ATG-ATTTTCC---TATGACAGTG-GTGG-CTTAA-AAGGGAG-AT----CA-GTA-ATAAATTCCGTGT---ACACACAGc
gi|9 : A-ATTAA---T-TGT---ACA--------TATTCTCAGTG-AAATGG-ACAA--ATTAATT----TGTAGTCAAC-AC-TTATATTTCC--------CCAGCTG------------------TAT--CA----TAT-TG-TA-AGTTGC-T----------T--TA---ATTG-TATT-C--TCCT-AGAAATAAACTGGC---AA--G--CG--CAGA-TAGT-----AGT-CT-AC-----AC----G-CGAGCGGGAACC--AAC-T-AAATGGGC-TTTTTTGCTTGTACATTTAGAAGTTTGGCCCCACCCCCACCCCTCCCCCACA-AAT-CAT-AAGCCTATAAACA-AT-ATG--TTGAA-AAAAG-TGTT----C--AATCT--AAA-AATCCC-G-GGCGAA-A-A-A---TT---TAAA----------TTCA--A-TTA-T-TTAT-A-TT--GAATCATA-TTTTTT-TTTA-------C---CAT-A---AT-CG--T-T-GG----A--TA-TATA--ACAA-CA-AATC---TT---CC-AACTTGAAA--TCCA-TA--TTT-TAT----AAT--GCAG-TAGA
gi|7 : A-ATTAA---T-TGT---AC------TAATATTCTCAGTG-AAATGG-ACAA--ATTAATT----CGTAGTCAAC-AC-TTATAT-TCC--------CCAGCTG------------------T-TATCA----TAT-TG-TA-AGTTGC-T---------------TGAATTG-TATT-C--TCAT-AGAAAAA--CTGGC---AAG-A--CG--CAGA-TAGT-----AGT-CT-AC-----AC----G-CGATCGG-AACC--AAC-T-AA-TGGGC-TTGTTTGCTCGTCACATTTAGAAGTTTGCCCCCCCCAT--------CCC-CA-AT--CAT-AAGCTTA--AACA-AT-ATG--TTGAA-AAAAG-TGTT----C--AGTCT--AAA-AATCCC-G-GGCGAA-A-A-A---TT---TAAA----------TTCA--A-T-A-T-TT-T-A-TTT-GAATCATAATTT-TT-TTTA-------C---CAT-A---AT-CG--T-T-GG----AATTA-T--A--ACAA-CA-AATC---TT---CC-GAC-TGAAA--TCCATTA--TTT-T------AAC--GCGG-TAGA
gi|4 : ttctgA-ATTAA---ATTGT---AC-TA-AATGAT-TACTCAGTG-AAATGG---AA-AATTAA--ATT-TGTAGTCACC-AC-TTATATTTCCCATTGATACCAGCTG------------------A-G--T-----TAT-CA-TACAGT----TGTAAGATTTCTGCTATGAATTG-TATT-CCTTCATCAGAAATAAATTGGC---AA--GATCGCTCAGATTAGCTCAAAGGT-CTCAC-----ACAAC-GACGAGCAG-AACCCAAACATAAAATGGGC-CTATGTTTGGCTTGTCACATTTAGCAGTTTGACCCCGCCCCCGCCCCCC-TAGA--TCATCAAGGCTATAAACA-ATGATGATTTG-A-AAAAG-TGTT----CAGAGTCTCTAAA-AATCCC-G-G-----------------------------------TA--A-CTA--------------GGGTGATAAATTGTT-TTAC-----------CAT-AAGGATGCG--TAT-GGAAT-A--TA-T--A--GAAA-CA-AGTC---TTGCACC-GAC-TGAAAA-TCCA-TA--ATT-TTAGTATATC--GCAGATAGAttaccgcggcatcagtcaagctctgttta
gi|6 : ggtttctgATATTCTCAGTG-AAATGG----ACAAATAATTTGTACATAGTCAACCAT-TTATAT-TCC--------CCAGCTG------------------T-TATCG----TAT-TGGTA-AGTTGC-T---------------TGTATTG-TATT-C--TCAT-AGAAATA-ACTGGC---AAG-A--CG--CAGA-TAGTT---AGGT-CT-AC-----AC----G-CGAGCGT-AACC--AAC-T-AAATGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCC-CA-A--TCA-TACGCCTATAAACA-A-TATG--TTGAA-AAAAA-ATTT----C--AGTC--TAA--AATCCCGG-G-CGAA-A-C-A---TT---T-AA---------ATTCA--ATTTATT-TT-T-A-TTTGAAATCAT-ATTT-TT-TTTT-------ATGACAT-A---AT-CG--T-TGGA----A--TA-TAGA--ACAA-CA-AATC---TT---CC-GAC-TAAAA--TCCA-TA--TTT-TAT----AAC--GCAG-TAGAgatataatctaccgcggcatcagtcaagcttctgttttatacttgcggaacgtaaacatggcg
gi|8 : ATATTCTCAGTG-------TACTGCAAT-AATT----TGTAGGCAA--ACATTATATA-CA--------TCAGCTG------------------T-T--TAAATATAT-TG-TA-AGTTGC-T-TCG------------AAATGG-T-TT-T--T-------AAGATAATGGT---GACGA--CG--CAGA-TAGT----AGGT-CT-AC-----AC----G-CGAGAGA-GAAC--AGC-T-AAATGGAC-TTGTAGTTGCTGTCTACTATTTGAGTTGCTCC--------------CCC-CA-AT--CAT-AAACGTATAAA-A-ATACTG--TTGAA-AAA-G-TGTTAATTC--AATCT--AAA-AATTCG-G-G--GAA-A-ATA---TT-----AA---------ATC----A-TTA-T-TT-A-T-TT--GAATCATAATTTATTATAGC-------C--ATAT-A---TT-CGT-T-T-GA----G--CA-T--AT-ATAA-TA-TAAT---TT---AC-GAC-TGAA---TCGA--A--TTTAT------AACG-GCAG-TAGtctaaccgcagcatcagtcaagctctgttta
gi|10 : gtttctgacttattgtactTATTCTCAGTG-AAATG----AACAATTAATT----TGTAGTCA-C-AC-TTATATTTCC--------CCAGCTGTTA---------------T-T--G-----TAT-TG-TA-AGTTGCTTGTA-------T----TGTATTG-TAAT-C--TCAT-AGAAATA-ACTGGC---AAG-A--CG--CAGA-TAGTT----GGT-CT-AC-----A---C-G-CGAGC-T-AACC--AAC-T-AAATGGGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNAACA-A-TATG--TTGAA-AAAAG-TGTT----C--AGTC--TAA--AAT-CG-G-G-CGAA-A-A-A---TT---T--A---------ATTAA--A-TTATT-TT-T-ATTT--GAAT-ATATTTTTTT-TTTTTTTTTTACTGACAT-A---AT-CG--T-T-GG----A---A-T----------------C---TT----C-AAC-TGAAA--TCCA-TA--TTT-TAT----AAC--GCAG-TAtactaccggaaatcagtcaagctat
gi|5 : TTCTCAGTG-AAATGG-ACAA--ATTAATT----TGTAGTCAAC-AC-TTATATTTCC--------CCAGCTG------------------T-TATCAA---TAT-TG-TA-AGTTGC-T-------------TA-AT-TTG-TATT----TCCT-AGAAATA-ACTGGC---AA--G--CG--CAGA-TAGTA---GGGT-CT-AC-----AA--C-G-CGAGCGG-AACC--AAC-T-AAATGGGCTTTTTGCTTGTCACATTTAGAAAGTTTGGCCCCACCCCCACCCCTCCCCC-CA-AATTCA-TAAGCCTA-AAACATATT-TG--TTGAA-AAAAGTTGTT----C--AATC--TAAA-AATCCCGG-G-CGAA-A-A-AAATTT---TAAA---------ATTCAATA-TTA-T-TT-TAA-TT--GAATCAT-ATTT-TT-TTTT-------TTACCAT-A---AT-CG--T-T-GGACATA--TA-T--A--ACAA-CA-ATCT---TT---CC-AAC-TGAAAA-TCCA-TA--TTT-TTAT---AAT--GCAG--AGA
gi|20 : tctgaataattgtacttaatcatGTCAAC-AC-TTGTATTTCC--------CGAGCTGACAGCAAGCCTGTTATCTT-C--C-----CAT-TG-TA-AGGTGC-T---------------TGTATTG-TATT-G--TCAT-AGAAAtctaccgccgggcatcagttcaagctctgattttatttcaacggtaaacatggcg
gi|1 : CCC-CA-AAT-CAT-ACGCCTATAAACA-AT-A-G--TCGAA-AAAAG-TGTTT---C--AGTCT---AA-AATCCC-G-G-CGAA-G-A-A-----------G---------ATTTA--A---A-T-TC-T-A-------ATCATA-TTT-TT-TTTA-------CTGACAT-A---AT-CGT-T-T-GA----A--TATT--A--ATAACCACAGACTCTTT---CCTGAC-TGAAATCTTCT-TG--TTA-T------AAC--GCtaac
gi|12 : tgcacacacgtaagaatcatcgcaatgagctttttcttgaaatgtttttgttctataacaaacccaacatatccccaaaagaaaagttaaaacaagtatcgaaactaaaactataaatccagttggtgtgttcgtgtaccttcatttcatagatccgccctcaaaatccagtggaacttttatagtatttagggatattctctatctgaggctcatatctttggggtggaggggtgttatatattgatgaagtgggattgttaggtacattacaaatgtctccgttctaaattgggtataattaaagttttcctcgattacacttcttctatttgagcaagtctacagctcgactgtacaaaaatgcaatacttcattaagtccctctacaatgcttcatttgattcgaacgcgaattctacatgataaagtaaaattttgactatcactgtggaacccttcagataagttatattcaaggttgtgagacgtacctcagtatcaaatgtttaattttacaagtacctgttttcgccatttcctccattatttatgttgaagtgattgatattttacacaatcccttaacaagcgatggttcaattagtaattaaattatgcatgttcaggattatttccttacggctgtacgatcagtatgattttcgtctatgacagctgtggctaaaaaaaggagatactacagtatattacgtgttacacacgcagtaatattctcagtgaaaatggaaagacaaatttgtagtcaacacttatatttcccgctgtatcgtatgtgtaagttgcttgatattgttattagtcataagaatatactggccaagaacgcagatagttgagtgctacaactaaccagcgaacgaaactaatcaacagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccCCC-CA----TCAC-ACGCCTATAAACA-ATAGCT--CTGACCAAAAG-TGTG----C--AGTCT--AAAAAATCCC-GAG-CGAC-ATA-A---TTATATACG---------AAGTA--A-TTG-A-TT-T-A------AATCATAATTTATT-TTTA-------TTTACATCA---AT-CGATC-T-GA----A--TA-T--ATTACAA-C--CACC---TT---CC-GAC-TGAAA--TCCA-TATTTTT-TAT----AACCAGCAG-TAgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|15 : tttgattgattgattatttattgtttaacgtccccccccccTAC-CCTATAAACA-AAT-TG--TTGCA-AAA---TTTTG---C--AGTCT-GAATCA--CCC-GTG-CGAATG-A-A---TT---TATA----------TTCA--A-TTA-TTTT-T-ATTT--GAAT-AT-ATTTTTT-TTttctaagaccaataagctctgttattatgcaacgtaaacttggcg
gi|21 : ttttgctttcacaatttagaaggtttgccccccccccctccaaataTT----C--AGTCT--AAA-AATCCCGG-G-CGTA-A-A-A---TT---T-AA---------ATTCA--A-TTA-T-TA-T---TT--GAATCAT--TTTTTT-TTT
gi|17 : TCCC-G-GGCGAA-A-A-A---TT---TAAATTCAATTATATTCA--A-TTA-T-TT-T-ATTT--CAATCATACTTT-TT-TTTA-------CTGGCAT-A---AT-CG--T-T-GG----A--T-------------------C---TT---CC--AC-TGAAA--TCCA-TA--TTT-TAT----AAC--Gtttaca
gi|22 : g---CC-GAC-TGAAAT--CCA-TA--TTT-TAT----AAT--GCAG-TA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): AACAACACCCCCCCCCCAAAAAAAAACACACCAAAAAACAACAACAATAAAATCAACTACAATCAACTACAATTCCTAATTTCACTATTGCTTCAAAATTCCATTTTATAATAGATA
Unaligned ( gi|19 ): TCATTAAATTGTCATGATAAATGCGTTGCAATATTATGATTAAACAGTTACTGCTTGATAAAATAAATTGATATTAAATAGAAGTTAC
Unaligned ( gi|23 ): TGATTGATTGATTGTAATATATTGTTTTACGCCCCCCCCCCCCC
Unaligned ( gi|24 ): TTTGGTTGATTGATTATTTGTTGTTTAACGTCCC
Alignments
lowQualScore : 1 11 1 33 111 111 2222 1 1 1 44444444444 1 11 1 44444444 22 1 11 1 1 1 111 1 555555555555 1 1 333 11 1 333333 1 1 111 1 333333 11 66666666666666 33 2222 33 11111 2 11 11 4444444444 1 33333333333333 2 111 1 11111 333333333 11 1 11 1111 33333 1 1 11 11 222222 222222 1111 1 1 3333 111 111 222 11 44444444 111 66666666666 11 1 2 1 11 1 1 1111 11 555555555555 2 1 11111 22222 222 1 1 2222 1 22222 111 1111 111111111 11111111 555555555555555555555555555555 222222222222222 1111 111 22222 22222222222 4444444444444444444444444 22222222 2222222 111 1 222222222222222222 111111111 1111111111 333333333333 111
lowQualScore : 2 6 88 3 7 6 00 7 777 777 1111 0 0 0 77777777777 0 22 0 3 22222222 33 0 33 3 3 0 0 0 666 3 0 3 000000000000 0 0 000 44 0 444444 0 3 777 3 333333 11 55555555555555 00 8888 00 88888 3 88 6 7 7 99 3333333333 7 1 6 7 3 77777777777777 2 7 444 0 77777 777777777 33 2 0 2 33 8888 00000 0 5 3 8 11 11 1 555555 1 8 000000 3 6 7777 8 1 2 3333 0 000 5 000 6 999 3 11 66666666 88 777 88888888888 33 3 0 0 0 33 0 0 7777 2 33 333333333333 0 0 3 88888 2 2 77777 333 0 0 1111 0 5 66666 000 2222 4 999999999 4 4 9999 8888 4 4 0 44444444 55 666666666666666666666666666666 777 4 4 8888 666666666666666 4 1111 8 4 8 4 4 4 000 66 4 33333 4 4 33333333333 4 66 66 4 4 1111111111111111111111111 22 55 33 2 33333333 3 5555555 0 3 777 55 2 3 3 7777 6 7777 3 3 44 5 6 3 3 3 555 3 666666666666666666 44 3 9 3 222222222 9999999999 6 1 888 3 666 3 88 3 555555555555 99999 3 3 000 3 6 3 3 3 77 3 555 77 4
lowQualScore : . . .. . . . .. . ... ... .... . . . ........... . .. . . ........ .. . .. . . . . . ... . . . ............ . . ... .. . ...... . . ... . ...... .. .............. .. .... .. ..... . .. . . . .. .......... . . . . . .............. . . ... . ..... ......... .. . . . .. .... ..... . . . . .. .. . ...... . . ...... . . .... . . . .... . ... . ... . ... . .. ........ .. ... ........... .. . . . . .. . . .... . .. ............ . . . ..... . . ..... ... . . .... . . ..... ... .... . ......... . . .... .... . . . ........ .. .............................. ... . . .... ............... . .... . . . . . . ... .. . ..... . . ........... . .. .. . . ......................... .. .. .. . ........ . ....... . . ... .. . . . .... . .... . . .. . . . . . ... . .................. .. . . . ......... .......... . . ... . ... . .. . ............ ..... . . ... . . . . . .. . ... .. .
lowQualScore : 0 7 33 3 3 7 77 3 777 555 2222 0 0 0 00000000000 0 22 0 2 55555555 88 0 22 2 2 0 0 0 555 2 0 5 000000000000 0 0 000 88 0 222222 0 3 777 3 333333 33 33333333333333 33 7777 77 77777 7 33 7 3 3 00 3333333333 3 0 7 3 3 33333333333333 5 5 888 0 55555 888888888 88 0 0 0 88 0000 88888 0 5 2 0 00 22 0 000000 4 8 888888 8 4 0000 0 4 0 1111 3 000 7 000 7 666 2 00 44444444 88 555 22222222222 88 2 0 0 0 22 0 0 0000 5 88 888888888888 0 0 2 55555 5 5 55555 222 0 0 2222 0 7 00000 000 3333 4 777777777 6 4 4444 5555 0 0 8 55555555 55 777777777777777777777777777777 000 0 0 5555 555555555555555 0 1111 0 0 0 0 4 4 888 11 4 11111 4 4 22222222222 4 33 11 4 4 8888888888888888888888888 00 44 00 6 55555555 6 4444444 6 6 000 00 1 6 6 1111 7 1111 3 3 22 4 2 1 1 1 444 1 555555555555555555 22 1 2 1 222222222 7777777777 2 0 666 6 444 6 66 6 777777777777 00000 6 6 444 3 7 3 3 3 99 3 888 99 0
consensus : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGCT--TAATTGTATGGACAC---AGAAT----GCAA-GAGC-TTTT-CTTGAAATGTTTT----------C-AAACAAAA-CACCCCCCCCC-----A-AAAAAAT--AAACA-AAA-TATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-ACCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC-CA-ATCTNTGGGGTGG-GG--CGT-A--GGTATAT--ATGAAAAT-GGGA--GTTA-GG-GTACAT-ACAAATG--TCTCCGTTCTAAAAGTGCGGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA-G--AGATCTACA-CTCGAN--TGTAC-AAAATTCAA-ACTTCT-T--A---GT--ATATACAATGA-TCATTTGAT--GAACGCT-AA-TCTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAAC---C--AGGTAAATTATAT-----TTCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTC-C---G-CATTTCC-CTCCAT--TTTAT-------TGATTT-GGATGTT---TTACA-T------AAT--CTTAACAA-C-ATGGTT-CAA-TTTAGTAATT-AATT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTT---T-CTATGACA--G--GTGGC-T-TAA-AAAGGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTG-AAATGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------CCAGCT--G-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-T-AAATGGGC-TTNTNTTTGC-NTCGT----N---TTAGAAG-TTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGG-G-CGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
Reference ( family-3950 ) : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGCTATTAATTGTATGGACAC---AGAAT----GCAA-GAGC-TTTT-CTTGAAATGTTTT----------C-AAACAAAA-CACCCCCCCCC-----A-GAAAAAT--AAACA-AAA-TATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGTGTAT-----------CATTTC-TAGAT-CCGC--CCTCAAAATCCCGTG-AACTACAATCATAATATTTA-GAG-TA-T-CTTT-TCTGAGGCTCATATCTTTGGGGTGGAGGGGTGTTATAGGTATATTGATGAAGAT-GGGATTGTTNAGG-GTACATTACAAATG--TCTCCGTTCTAAAAGTGTGGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCTATTTGAGCATGNNNGATCTACAGCTCGAN--TGTAC-AAAATTCAA-ACTTCC-T--A---GT--ATATACGATGA-TCGTTTGAT--GAACGCT-AA-TCTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAANC---C--AGGTNAATTATAT-----TTCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTT-C---G-CATTTNC-CTCCAT--TTTAT-------TGATTT-GGATGTT---TT----T------AAT--CTTAACAA-C-ATGGTT-CAA-TTTAGTAATT-AATT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAG-ATG-ATTT---T-CTATGACA--G--GTGGC-T-TAA-AAAGGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTG-AAATGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------CCAGCT--G-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-T-AAATGGGC-TTNTNTTCGC-NTCGT----N---TTANNAG-NTTGGCCCCNCCCNCACCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCC-G-G-CGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTNCTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
gi|1 : ACACGTAAGAATCATCGCAATGAGC-TTTTTCTTGAAATGTTTTTGTTCTATAAC-AAACCCAA-CATATCCCCAA-----AAGAAAAGTTAAAACA-AG--TATC-GAAACTAA-AA-CT--ATAAATCCAGTT-GGTGTGTTCGTGTACCTTCATTTCATAGAT-CCGC--CCTCAAAATCCAGTGGAACTT---TTATAGTATTTA-GGGATA-TTCTCTATCTGAGGCTCATATCTTTGGGGTGGAGGGGTGTTA----TATATTGATGAAG-T-GGGATTGTTA--G-GTACATTACAAATG--TCTCCGTTCTAAA--T-TGGGTATA------AT-----TAAAGTTTTCCTCGATTACACTT-CTTCTATTTGAGCAAG-----TCTACAGCTCGAC--TGTACAAAAATGCAATACTTCA-TTAA---GTCCCTCTACAATGCTTCATTTGATTCGAACGCG-AATTCTAC-A---TGATA-AAG-TAAAATTTTGACTAT--CACTGTGGAACCCTTC--AGATAAGTTATAT-----TCAAGGTT--GTGAGACGT-ACCTCAGTATCAAATGTTT--AATTTTACAAGTACCTGTTTT-C---GCCATTT-C-CTCCATTATTTATGTTGAAGTGATT---GATATT---TTACA-C------AATCCCTTAACAAGCGATGGTT-CAA--TTAGTAATTAAATTATGCATGTTCAGGATTATTTCCTTACGGCTG--TACGATCAGTATG-ATTTTCGT-CTATGACA--GCTGTGGC-TAAAA-AAAGGAG-ATACTACAG-TATATT-A---CGTGTTACACACGCAGTAATATTCTCAGTGAAAATGG-AAAGACA---AA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------C--GCT--G-----------------TA-T--C-G----TA---TGTG-TAAG----TTGCT-------T----GATATTGTTATTAG--TCAT-AAGAAT-ATA-CTGGCCAA-GAA-CG--CAGA-TAGTT---GAGTGCT-ACAACTAAC--CAG-CGAACGA-AACT--AAT-C-AA
gi|1 : tgcacCGCCCCCCCCCC-CAAAT-CAT-ACGCCTATAAACA-AT-A-G--TCGAA-AAAAG-TG----TTTCAG----TC-TAAA-A--TCCC-G-G-CGAA-G-AA--------------G---------ATTTA--A---A-TTC-T-A--------ATCATA---------TTT-TTTTTACTGACAT-A---AT-CGT-T-TGA----A--TATTAAT--A--ACCACA-GACTCTTTC-CTGAC-TG-AAA-TCT--T-C--TTGT---TATAAC--GCcagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccccccaaatcatacgcctataaacaatagtcgaaaaaagtgtttcagtctaaaatcccggcgaagaagatttaaattctaatcatattttttttactgacataatcgtttgaatattaataaccacagactctttcctgactgaaatcttcttgttataacgcgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|10 : tgcacacacgtaagaatcatcgcaatgagctttttcttgaaatgtttttgttctataacaaacccaacatatccccaaaagaaaagttaaaacaagtatcgaaactaaaactataaatccagttggtgtgttcgtgtaccttcatttcatagatccgccctcaaaatccagtggaacttttatagtatttagggatattctctatctgaggctcatatctttggggtggaggggtgttatatattgatgaagtgggattgttaggtacattacaaatgtctccgttctaaattgggtataattaaagttttcctcgattacacttcttctatttgagcaagtctacagctcgactgtacaaaaatgcaatacttcattaagtccctctacaatgcttcatttgattcgaacgcgaattctacatgataaagtaaaattttgactatcactgtggaacccttcagataagttatattcaaggttgtgagacgtacctcagtatcaaatgtttaattttacaagtacctgttttcgccatttcctccattatttatgttgaagtgattgatattttacacaatcccttaacaagcgatggttcaattagtaattaaattatgcatgttcaggattatttccttacggctgtacgatcagtatgattttcgtctatgacagctgtggctaaaaaaaggagatactacagtatattacgtgttacacacgcagtaatattctcagtgaaaatggaaagacaaatttgtagtcaacacttatatttcccgctgtatcgtatgtgtaagttgcttgatattgttattagtcataagaatatactggccaagaacgcagatagttgagtgctacaactaaccagcgaacgaaactaatcaacagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttTATTCTCAGTG-AAATG----A-ACAATTAA-TT----TGTA----GTCA--C-ACTTATATTTCC--------CCAGCT--G-----------------T--TATT-G----TA---T-TG-TAAG----TTGCT-------TGTATTGTATTG-TAAT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT----GGT-CT-AC-----A---C-G-CGAGC-T-AACC--AAC-T-AAATGGGC-------NNNN-NNNNN----N---NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-A---TCG-G-G-CGAA-A-AA---T-T---T----A---------ATTAA--A-TTATTTT-T-ATTT--G-AAT-ATATTTTTTTTTTTT-TTTTTACTGACAT-A---AT-CG--T-TGG--------------------------AA-TCTT----CAAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|11 : TGTGGCCTGGGGATAAT--GGGAC-GGTAA-TTGCCCGCTATTAATTGTA--GACAC---AGAAT----GCAA-GAGCTTTTT-CTTGAAATGTTTT----------CAAAACAACA-C-CCCCCCCCC-----A-AAAAAATA-AAACATAAA-TATCAG-AAC-AACAA-C--TATAAATCCAGTT-GGTGTAT-----------CATTTC-TAGAT-CCGCTACTTCAAAATTCCATG-AACT------ATAATATATA-GA
gi|11 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAG-ATCAAA-ATTTTAAAATTTACTAGTAC---TTTT-C---tcaaaattttaaaatttactagtacttttcc
gi|12 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtggcctggggataatgggacggtaattgcccgctattaattgtagacacagaatgcaagagctttttcttgaaatgttttcaaaacaacaccccccccccaaaaaaataaaacataaatatcagaacaacaactataaatccagttggtgtatcatttctagatccgctacttcaaaattccatgaactataatatCCCCCCCCCC-CA---TCAC-ACGCCTATAAACA-ATAGCT--CTGACCAAAAG-TG----TG-CAG----TC-TAAA-AAATCCC-GAG-CGAC-ATAA---T-TATATACGAA---------GT--A--A-TTG-ATT-T-A-------AATCATA--------ATTTATTTTTATTTACATCA---AT-CGATC-TGA----A--T----AT--ATTACAACC-A--CCTT---CCGAC-TG-AAA-TCCA-T-ATTTT-T---TATAACCAGCAG-TAc
gi|13 : tttgattgattgattatttattgtttaacgtccc-ATCAAA-ATTTTAAAATTTACTAGTAC---TTTTCC---G-CATTTCC-CT-CAT--TTTA--------TGATTTGGGATGTT---TT----TTAACCGAAT--CTAAACAA-CTATGGTT-CAATTTTAGTAATT-AAAT-TGC-ATTTCA--ATTATTTCG--------G--TGAGATCAG-ATG-ATTT---TCCTATGACAGTG--GTGGC-T-TAA-AAGGGAG-AT----CAG-TA-ATAAATTCCGTGT---ACACACAGttctaagaccaataagctctgttattatgcaacgtaaacttggcg
gi|14 : GATCTACA---CAATATTGTAC-AATGTT-AG-ACTTCT-A--A---GT--ATATCCGATTA-TCGTTTGAT--AAATGCT-G---CTAC-AACTTGATA-AAGTT-AAGTTTAAAC-TT--CAC-ATGGAAAC---C--TGCTAAACTGCATGTATATTCAAGTTCAGTG----GT-ATCACCG-ATCAAATGCTGTACAAT------ATAT---TTTC-C---G-TATTT
gi|15 : ---TTAGAAG-GTTTGCCCCCCCC--------CCCTC-CAAAT--AT--ACCCTATAAACA-AAT-TG--TTGCA-AAA---TT----TTGCAG----TC-TGAA-TC-ACCC-GTG-CGAATG-AA---T-T---T---AT---------ATTCA--A-TTATTTT-T-ATTT--G-AAT-AT---------ATTT-TTTTTtttagatgtctttat
gi|17 : ttttgctttcacaat-TCCC-G-GGCGAA-A-AA---T-T---TA--AATTCAATTATATTCA--A-TTA-TTT-T-A-TT--TCAATCATA--------CTTT-TTTTTACTGGCAT-A---AT-CG--T-TGG---------------------------A-TCTT---CC-AC-TG-AAA-TCCA-T-A--TT-T---TATAAC--G
gi|18 : gC-AT--CAC-GTGGAAAC---CTCAGATAAATTATAT-----C-CAAGTTCAGTG----GT-ACAACAG-ACCAAATGTT----AATTTACCG-------TTTC-C---G-CATTTA--CTTCGT--TTTA--------TGATTT-GG
gi|2 : TGTGACCTGGG-ATAATTCGCGACCAGTAAATTGCCCGCT--TAATTGTATGAACAC---AGAAT----ACAA-GAGC-TTTT-CTTGAAATGTTT-----------C-AAACAAAAACACCCCCCCCCCCTAAA-AAAAAAT--AAAAA-AAAATATCAGAAAC-AA-AAACT-TATAAATCCAGTTTGGGGTAT-----------CATTTC-TAGATTCCGCAACTTCAAAATCCTATG-AACTACAATCATAACATTTGCGAG-TAAT-CTTT-TCTGAGGC--A-ATCTG-GGGGTGGCGGCCCGT-ATAGATCTAT--ATGAAAATTGGGA--GTTATGGCGTACAT-ACAAATGCTTCTCCGTTCTAAAAGTGCGGGTATATGATACATGTATATATAGTGCTCCTCGATTACACTTTCTTCT-TTT-ACCA-GATAGAT--ACA-CTCGAA--TGTAC-AAAATTCAA-ACTTTC-T--AAAAGT--ATATACAATGA-TCATTTGAT--GAACGCT-AA-TCTACCA---TGATACAAGTTAAAATTTTGAC-ATTCCAC-GTGGAAAC------AGGCTAATTATAT-----TTCAAGTTTAGTG----GTTACCACAGCATCAAA-GTT----AATTTACTAGTAC---TTTT-CAAAG-CAGTTCCTCTCCAT--TTTAT-------TGATTT-GGATGTTATTTT----T------AAT--CTTAACAA-C-ATGGTTTCAA-TTTAGTAATT-AATT-TGC-CATTCA--ATTATTTC---------GCTTGAGATCAGCGTGCATTT---T-CTAT-ACA--GA-GTGGCCT-TAATAAAGGAGCAT----CAGGTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTG-AAATGGTACA-ACAATTAA-TTGTTATGTA----GTCAA-C-ACTTATATGTCC--------CCAGCT--G-----------------T--T--C------TA---T-TG-TAAG----TTGCTGTAGGCTTA---TATATTG-TATT-C--TCATCAGAAAA-ATA-CTGG-CAA---A-CG--CAG--TAGTT---AGGT-CT-AC-----AC--C-G-CAAGCGT-AACC--AAC-T-AAATGGGC-NNNNNNNNNN-NNNNN----N---NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNCCC-CAATTTCATTACGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TCTTAAACAA-TCCC-G-G-CGAA-A-AA---T-T---TA--AA---------ATTTA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTTGTTTTTCCTGACAT-A---AT-CG--T-TGA----A--T----AT--A--ACAACA-AA-ACTT---CCGAC-TG-AAATTCCA-T-A--TT-T---TGAAAC--GCAG-TAGA
gi|20 : ----GTCAA-C-ACTTGTATTTCC--------CGAGCT--GACAGCAAGCCTGTTATCT--T--C-C----CA---T-TG-TAAG----GTGCT-------T-----GTATTG-TATT-G--TCAT-AGAAAT-A-A-C
gi|21 : ----TT-CAG----TC-TAAA-AA-TCCCGG-G-CGTA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTA-T---TT--G-AATCAT----------TTT-TTTTTTTTTACA
gi|22 : ---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TA
gi|3 : TGTG--CTGGGGATAAT--GGGAC-GGTAAATTGCC-GCT--TA-TTGTATG-ACAC---AGAAT----ATAA-GAGT-TTTT-CTTGAAATGTTTT----------C-AAAC--AA-CACCCCCCCCC---------AAAAT--AAACA-AAA-TATCAGAAAC-AA-AA-CTATATAA--TCAGTG-GGAGTAT------------ATTTC-TAGAT-CCG---CCTCAAAATCAT-TG-AACTACAAT-ATAATATTTG-GAG-TA-T-TTTT-TCTGAG---CA----TCTGGGGTGG------------GGTATAT--ATGAAAA--GGGA--GTTCAGG-GTACAT----AATG--TCTCC-TTCT-AAAGTG-GGGTATAT-----AT-TATAT-AAGTACT-CTCGA-TACACTT-CTTTT-----AGCATGCAAGATCTACA-CTCGAA--TGTAC-AAAATC--A-ACTTCTAC--A---GT--ATATACAATGA-TCATTTGAT--GAACGCTGAA-TCTAC-----TGATA-AAG-TAAAATTTTGAC-AT--CAC--TGGAACT---C--AGGT-AATTATA------TTCAAGTTTAGTG----GT-ACCACAG-ATCAAATGTT----AATTTTCTAGTAT---TTTC-C---G-CATTT---CTCAAT--TTTA--------TGATTT-GGATGTT---TTACACG------AAT--C-TAACAA-C-ATGGTT-CAA-TTTAGTATTA-AATT-TG--CATT----ATTATTTG---------G--TGAGATCAG-ATG-A-TT---T-CTATGA-A--G--GTGGC---TAA-AAAGGAG-AT----CAG-TA-ATAAATTCCGTGT---ACACACAGTAcatctaccgcgacatcagtcaagctctgttta
gi|4 : cattaattgtcatgatatatgcttgcaaatattaggattaacagtacatccttgataaaaataaattgataaaacagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-ATTAA---ATTGT---AC-TA-AATGAT-TACTCAGTG-AAATGG-A---A-AATTAAATT----TGTA----GTCAC-C-ACTTATATTTCCCATTGATACCAGCTGAG-----------------TTAT--C-A----TACAGT-TG-TAAGATTTCTGCT-------A----TGAATTG-TATT-CCTTCATCAGAAATAA-A-TTGG-CAA-G-ATCGCTCAGATTAGCTCAAAGGT-CTCAC-----ACAAC-GACGAGCAG-AACCCAAACATAAAATGGGC-CTATGTTTGG-CTTGTCACAT---TTAGCAG-TTTGACCCCGCCCCCGC----CCCCC-TAGA-TCATCAAGGCTATAAACA-ATGATGATTTG-A-AAAAG-TG----TT-CAGAGTCTC-TAAA-AA-TCCC-G-G-------------------------------------TA--A-CTA-------------G-GGTGATA--------AATT-GTTTTAC---CAT-AAGGATGCG--TATGGAAT-A--T----AT--A--GAAACA-AG-TCTTGCACCGAC-TGAAAA-TCCA-TAA--TT-TTAGTATATC--GCAGATAGA
gi|5 : ggtttctgTTCTCAGTG-AAATGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------CCAGCT--G-----------------TTAT--CAA----TA---T-TG-TAAG----TTGCT-------T----AAT-TTG-TATT----TCCT-AGAAAT-A-A-CTGG-CAA-G---CG--CAGA-TAGTA---GGGT-CT-AC-----AA--C-G-CGAGCGG-AACC--AAC-T-AAATGGGCTTTTTGCTTGT-CACAT----T---TAGAAAG-TTTGGCCCCACCCCCACCCCTCCCCC-CAAATTCA-TAAGCCTA-AAACATATT-TG--TTGAA-AAAAGTTG----TT-CAA----TC-TAAA-AA-TCCCGG-G-CGAA-A-AAAATT-T---TA--AA---------ATTCAATA-TTA-TTT-TAA-TT--G-AATCAT---------ATTT-TTTTTTTTACCAT-A---AT-CG--T-TGGACATA--T----AT--A--ACAACA-AT-CTTT---CCAAC-TGAAAA-TCCA-T-AT-TT-T---TATAAT--GCAG--AGAgatataatctaccgcggcatcagtcaagcttctgttttatacttgcggaacgtaaacatggcg
gi|6 : tctgaataattgtacttaatcatATATTCTCAGTG-AAATGG-ACA-A--AT-AA-TT----TGTACATAGTCAA-CCATTTATATT-CC--------CCAGCT--G-----------------T--TATC-G----TA---T-TGGTAAG----TTGCT-------T-----GTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-----A---C-G-CGAGCGT-AACC--AAC-T-AAATGGGC-NNNNNNNNNN-NNNNN----N---NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNCCC-CCAA-TCA-TACGCCTATAAACA-A-TATG--TTGAA-AAAAA-AT----TT-CAG----TC-T-AA-AA-TCCCGG-G-CGAA-A-CA---T-T---T---AA---------ATTCA--ATTTATTTT-T-A-TTTGA-AATCAT---------ATTT-TTTTTTATGACAT-A---AT-CG--T-TGGA---A--T----ATAGA--ACAACA-AA-TCTT---CCGAC-TA-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGAtctaccgccgggcatcagttcaagctctgattttatttcaacggtaaacatggcg
gi|7 : A-ATTAA---T-TGT---AC------TAATATTCTCAGTG-AAATGG-ACA-A--ATTAA-TT----CGTA----GTCAA-C-ACTTATA-TTCC--------CCAGCT--G-----------------TTAT--C-A----TA---T-TG-TAAG----TTGC--------T----TGAATTG-TATT-C--TCAT-AGAAA--A-A-CTGG-CAA-G-A-CG--CAGA-TAGT-----AGT-CT-AC-----A---C-G-CGATCGG-AACC--AAC-T--AATGGGC-TTGTTTGCTC-GTCACA---T---TTAGAAG-TTT-GCCCCCCCCA--------TCCC-CAA--TCA-TAAGCT--TAAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGG-G-CGAA-A-AA---T-T---T---AA---------ATTCA--A--TA-TTT-T-ATTT--G-AATCATA--------ATTT-TTTTTAC---CAT-A---AT-CG--T-TGG----AATT----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCATT-A--TT-T-----TAAC--GCGG-TAGAtctaaccgcagcatcagtcaagctctgttta
gi|8 : ttctgATATTCTCAGTG-TACTG-------CAAT-AA-TT----TGTA----GGCAAAC-A-TTATATA-CA--------TCAGCT--G-----------------T--T--T-AAATATA---T-TG-TAAG----TTGCT-------T----CGAAATG--GTT-T--TTA----AGAT-A-A--TGG-TGACG-A-CG--CAGA-TAGT----AGGT-CT-AC-----AC----G-CGAGAGA-GAAC--AGC-T-AAATGGAC-TTGTAGTTGCTGTC-T----A---CTATTTGAGTTG---------------CTCCCCC-CAA--TCA-TAAACGTATAAA-A-ATACTG--TTG-A-AAAAG-TGTTAATT-CAA----TC-TAAA-AA-T-TC-G-G--GGA-A-AA---TAT---TA--AA-----------TC---A-TTA-TTT-A-T-TT--G-AATCATA--------ATTT-ATTATAGCCATAT-A---TT-CG--T-TTG----AG-C----AT--AT-ATAATATAA-T-TT---ACGAC-TG--AA-TCGA---A---T-T---TATAACG-GCAG-TAGttaccgcggcatcagtcaagctctgttta
gi|9 : gtttctgacttattgtactA-ATTAA---T-TGT---ACA--------TATTCTCAGTG-AAATGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------CCAGCT--G-----------------TA-T--C-A----TA---T-TG-TAAG----TTGCT-------T----TA-ATTG-TATT-C--TCCT-AGAAAT-A-AACTGG-CAA-G---CG--CAGA-TAGT-----AGT-CT-AC-----AC----G-CGAGCGGGAACC--AAC-T-AAATGGGC-TTTTTT--GC-TT-GT----ACATTTAGAAG-TTTGGCCCCACCCCCACCCCTCCCCCACAAAT-CAT-AAGCCTATAAACA-AT-ATG--TTGAA-AAAAG-TG----TT-CAA----TC-TAAA-AA-TCCCGG-G-CGAA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTTAT-A-TT--G-AATCATA--------TTTT-TTTTTAC---CAT-A---AT-CG--T-TGGAT--A--T----AT--A--ACAACA-AA-TCTT---CCAACTTG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAGAtactaccggaaatcagtcaagctat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACAACACCCCCCCCCCAAAAAAAAACACACCAAAAAACAACAACAATAAAATCAACTACAATCAACTACAATTCCTAATTTCACTATTGCTTCAAAATTCCATTTTATAATAGATA
Unaligned ( gi|19 ): TCATTAAATTGTCATGATAAATGCGTTGCAATATTATGATTAAACAGTTACTGCTTGATAAAATAAATTGATATTAAATAGAAGTTAC
Unaligned ( gi|23 ): TGATTGATTGATTGTAATATATTGTTTTACGCCCCCCCCCCCCC
Unaligned ( gi|24 ): TTTGGTTGATTGATTATTTGTTGTTTAACGTCCC
Alignments
lowQualScore : 1 11 1 11 111 111 2222 1 2 44444444444 1 11 1 222222 11 1111 1 1 1 1 22 1 555555555555 1 1 3333 1 1 1 1 111 1 3333333 88888888888 1 11 22 11 111 22 22 11 11 555555555 1111 1 1 3333 1 1111111 33333333 11 1 11 11111 33333 1 11 11 222 222222 1111 1 1 3333 111 111 111 11 44444444 22222222 111 1 2 1 1 1 1 1111 11 555555555555 1 1 1 111 22222 11 1 1 1 2222 1 22222 111 1111 111111111 11111111 555555555555555555555555555555 222222222222222 1111 111 22222 22222222222 555555555555555555555555555 111111 2222222 111 2222222222222222222 111111111 1111111111 333333333333 111
lowQualScore : 2 6 88 3 7 6 88 7 777 777 1111 0 0 77777777777 0 22 0 3 888888 0 33 9999 0 3 3 0 0 0 55 3 0 1 000000000000 0 0 1111 88 0 6 9 3 3 777 3 6666666 88 44444444444 3 3 88 00 88 777 00 00 88 6 7 7 88 222222222 7 7 1 6 7 8888 3 3 5555 3 0 1 8888888 44444444 33 0 33 55555 00000 0 66 3 8 11 11 0 555 1 6 000000 3 6 7777 8 1 2 3333 0 555 000 6 888 3 11 66666666 88 77777777 777 0 0 0 0 3 0 0 7777 2 33 333333333333 9 0 3 0 777 2 2 77777 33 0 0 0 1111 0 5 66666 000 2222 4 999999999 4 4 9999 8888 4 4 0 44444444 55 666666666666666666666666666666 777 4 4 8888 666666666666666 4 1111 8 4 8 4 4 4 000 66 4 33333 4 4 33333333333 4 66 66 4 4 666666666666666666666666666 4 44 2 333333 3 5555555 0 3 777 55 2 3 3 7777 6 7777 3 3 44 3 3 555 3 4444444444444444444 44 3 9 3 222222222 7777777777 6 999 3 666 3 88 3 555555555555 99999 3 3 000 3 6 3 3 3 77 3 555 77 4
lowQualScore : . . .. . . . .. . ... ... .... . . ........... . .. . . ...... . .. .... . . . . . . .. . . . ............ . . .... .. . . . . . ... . ....... .. ........... . . .. .. .. ... .. .. .. . . . .. ......... . . . . . .... . . .... . . . ....... ........ .. . .. ..... ..... . .. . . .. .. . ... . . ...... . . .... . . . .... . ... ... . ... . .. ........ .. ........ ... . . . . . . . .... . .. ............ . . . . ... . . ..... .. . . . .... . . ..... ... .... . ......... . . .... .... . . . ........ .. .............................. ... . . .... ............... . .... . . . . . . ... .. . ..... . . ........... . .. .. . . ........................... . .. . ...... . ....... . . ... .. . . . .... . .... . . .. . . ... . ................... .. . . . ......... .......... . ... . ... . .. . ............ ..... . . ... . . . . . .. . ... .. .
lowQualScore : 0 7 33 3 3 7 33 3 777 555 2222 0 0 00000000000 0 22 0 2 222222 8 88 5555 0 2 2 0 0 0 55 2 0 0 000000000000 0 0 8888 22 0 5 0 3 3 777 3 7777777 33 77777777777 7 3 33 77 33 777 00 77 33 7 3 3 77 000000000 3 3 0 7 3 0000 3 3 3333 2 0 0 5555555 55555555 88 0 88 00000 88888 0 55 2 0 00 22 6 000 4 0 888888 8 4 0000 0 4 0 1111 3 777 000 7 000 2 00 44444444 88 00000000 000 0 0 0 0 2 0 0 0000 5 88 888888888888 0 0 2 0 555 5 5 55555 22 0 0 0 2222 0 7 00000 000 3333 4 777777777 6 4 4444 5555 0 0 8 55555555 55 777777777777777777777777777777 000 0 0 5555 555555555555555 0 1111 0 0 0 0 4 4 888 11 4 11111 4 4 22222222222 4 33 11 4 4 222222222222222222222222222 4 88 6 999999 6 4444444 6 6 000 00 1 6 6 1111 7 1111 3 3 22 1 1 444 1 2222222222222222222 22 1 2 1 222222222 9999999999 2 666 6 444 6 66 6 777777777777 00000 6 6 444 3 7 3 3 3 99 3 888 99 0
consensus : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGCT--TAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------CAAA-CAAAA-CACCCCCCCCC-----AAAAAAA--TAAA-NA-AAA-TATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-A-CCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC-CA-ATCTNTGGGGTGG-GG-----GT-GNTATATAT-GA--AAAT-GGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAAAGTGCGGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-T-TAA--GTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATTATAT-----TTCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGGTT-CAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGGC-TTAA-AAA-GGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------CCAGCT--G-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-T-AAATGGGCTT-TGTTTGC-TT---CGT----T---TTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
Reference ( family-3950 ) : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGCT--TAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTT-CTTGAAATGTTTT----------CAAA-CAAAA-CACCCCCCCCC-----AAAAAAA--TAAA-CA-AAA-TATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-A-CCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC-CA-ATCTNTGGGGTGG-GGC----GTAGGTATATAT-GA--AAAT-GGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAAAGTGCGGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-T-TA---GTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACC---AGGTAAATTATAT-----TTCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACAT-AATC--TTAACAA-C-ATGGTT-CAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGGC-TTAA-AAA-GGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------CCAGCT--G-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-T-AAATGGGCTTNTNTTTGC-NT---CGT----N---TTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
gi|1 : ACACGTAAGAATCATCGCAATGAGCTTTTTCTTGAAATGTTTTTGTTCTATAACAAA-CCCAA-CATATCCCCAA-----AAGAAAAGTTAAA-AC-AAG-TATC-GAAACTAA-AA-CT--ATAAATCCAGTT-GGTGTGTTCGTGTACCTTCATTTCATAGAT-CCGC---CCTCAAAATCCAGTGGAACTT---TTATAGTATTTA-GGGATA-TTCTCTATCTGAGGCTCATATCTTTGGGGTGGAGGG----GT-GTTATATATTGATGAAGT-GGGATTGTT-A-GG--TACATTACAAATG--TCTCCGTTCTAAA--T-TGGGTATA----------AT-TAAAGTTTTCCTCGATTACACTT-CTTCTATTTGAGCA----AG-TCTACAGCTCGACTGTACAAAAATGCAATACTTCAT-TAA--GTCCCTCTACAATGCTTCATTTGATTCGAACGCG-AATTCTAC-A---TGATA-AAGT-AAAATTTTGACTAT--CACTGTGGAACCCTTCAGATAAGTTATAT-----TCAAGGTT--GTGAGACGT-ACCTCAGTATCAAATGTTT--AATTTTACAAGTACCTGTTTTC---GCCATTTCC--TCCATTATTTATGTTGAAGTGATT---GATATTTT---ACAC-AATCCCTTAACAAGCGATGGTT-CAA-TT-AGTAATTAAATTATGCATGTTCAGGATTATTTCCTTACGGCTG--TACGATCAGTATG-ATTTT-CGTCTATGACA--GCTGTGGC-TAAA-AAAAGGAG-ATACTACAG-TATATTA----CGTGTTACACACGCAGTAATATTCTCAGTGAAAATGG-AAAGACAA---A-TT----TGTA----GTCAA-C-ACTTATATTTCC--------C--GCT--G-----------------TA-T--C-G----TA---TGTG-TAAG----TTGCT-------T----GATATTGTTATTAG--TCAT-AAGAAT-ATA-CTGGCCAA-GAA-CG--CAGA-TAGTT---GAGTGCT-ACAACTAAC--CAG-CGAACGA-AACT--AAT-C-AA
gi|1 : tgcacCGCCCCCCCCCC-CAAAT-CAT-ACGCCTATAAACA-AT-A-G--TCGAA-AAAAG-TG----TTTCAG----TC-TAAA-A--TCCCGG-CGAA-G-AA--------------G---------ATTTA--A---A-TTC-T-A--------ATCATA---------TTT-TTTTTACTGACAT-A---AT-CGT-T-TGA----A--TATTAAT--A--ACCACA-GACTCTTTC-CTGAC-TG-AAA-TCT--T-C--TTGT---TATAAC--GCcagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccccccaaatcatacgcctataaacaatagtcgaaaaaagtgtttcagtctaaaatcccggcgaagaagatttaaattctaatcatattttttttactgacataatcgtttgaatattaataaccacagactctttcctgactgaaatcttcttgttataacgcgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|10 : tgcacacacgtaagaatcatcgcaatgagctttttcttgaaatgtttttgttctataacaaacccaacatatccccaaaagaaaagttaaaacaagtatcgaaactaaaactataaatccagttggtgtgttcgtgtaccttcatttcatagatccgccctcaaaatccagtggaacttttatagtatttagggatattctctatctgaggctcatatctttggggtggaggggtgttatatattgatgaagtgggattgttaggtacattacaaatgtctccgttctaaattgggtataattaaagttttcctcgattacacttcttctatttgagcaagtctacagctcgactgtacaaaaatgcaatacttcattaagtccctctacaatgcttcatttgattcgaacgcgaattctacatgataaagtaaaattttgactatcactgtggaacccttcagataagttatattcaaggttgtgagacgtacctcagtatcaaatgtttaattttacaagtacctgttttcgccatttcctccattatttatgttgaagtgattgatattttacacaatcccttaacaagcgatggttcaattagtaattaaattatgcatgttcaggattatttccttacggctgtacgatcagtatgattttcgtctatgacagctgtggctaaaaaaaggagatactacagtatattacgtgttacacacgcagtaatattctcagtgaaaatggaaagacaaatttgtagtcaacacttatatttcccgctgtatcgtatgtgtaagttgcttgatattgttattagtcataagaatatactggccaagaacgcagatagttgagtgctacaactaaccagcgaacgaaactaatcaacagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttTATTCTCAGTGAAA-TG----A-ACAATTAA-TT----TGTA----GTCA--C-ACTTATATTTCC--------CCAGCT--G-----------------T--TATT-G----TA---T-TG-TAAG----TTGCT-------TGTATTGTATTG-TAAT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT----GGT-CT-AC-----A---C-G-CGAGC-T-AACC--AAC-T-AAATGGGC------NNNN-NN---NNN----N---NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-A----TCGGGCGAA-A-AA---T-T---T----A---------ATTAA--A-TTATTTT-T-ATTT--G-AAT-ATATTTTTTTTTTTT-TTTTTACTGACAT-A---AT-CG--T-TGG--------------------------AA-TCTT----CAAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|11 : TGTGGCCTGGGGATAAT--GGGAC-GGTAA-TTGCCCGCTATTAATTGTA--GACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------CAAAACAACA-C-CCCCCCCCC-----AAAAAAA--TAAAACATAAA-TATCAGAA-C-AACAA-CT--ATAAATCCAGTT-GGTGTAT-----------CATTTC-TAGAT-CCGCTA-CTTCAAAATTCCATG-AACTATAAT-ATA
gi|11 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAG-ATCAAA-ATTTTAAAATTTACTAGTAC---TTTTC---tagatcaaaattttaaaatttactagtacttttcc
gi|12 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtggcctggggataatgggacggtaattgcccgctattaattgtagacacagaatgcaagagctttttcttgaaatgttttcaaaacaacaccccccccccaaaaaaataaaacataaatatcagaacaacaactataaatccagttggtgtatcatttctagatccgctacttcaaaattccatgaactataatatCCCCCCCCCCCCC-CA---TCAC-ACGCCTATAAACA-ATAGCT--CTGACCAAAAG-TG----TG-CAG----TC-TAAA-AAATCCCGAGCGAC-ATAA---T-TATATACGAA---------GT--A--A-TTG-ATT-T-A-------AATCATA--------ATTTATTTTTATTTACATCA---AT-CGATC-TGA----A--T----AT--ATTACAACC-A--CCTT---CCGAC-TG-AAA-TCCA-T-ATTTT-T---TATAACCAGCAG-TAc
gi|13 : tttgattgattgattatttattgtttaacgt-ATCAAA-ATTTTAAAATTTACTAGTACT--TTTCC---GC-ATTTCC-CT-CATT--TTA--------TGATTTGGGATGTTTTTTAACCG-AATC--TAAACAA-CTATGGTT-CAATTTTAGTAATTAA-AT-TGC-ATTTCA--ATTATTTCG--------G--TGAGATCAG-ATG-ATTTTCC---TATGACAGTG--GTGGC-TTAA-AAG-GGAG-AT----CAG-TA-ATAAATTCCGTGT---ACACACAGttctaagaccaataagctctgttattatgcaacgtaaacttggcg
gi|14 : GATCTACA-CAATATTGTACAATG-TT-AG-ACTTC-T-AA---GTA--TATCCGATTAT-CGTTTGAT--AAATGCT-G---CTAC-AACTTGATA-AAGTTAAG-TTTAAAC-TT--CAC-ATGGAAACC---TGCTAAACTGCATGTATATTCAAGTTCAGTG----GT-ATCACCG-ATCAAATGCTGTACAAT------ATAT---TTTCC---GT-ATTT
gi|15 : TTTGC-TTTCACAA----T---TTAG-AAGGTTTGCCCCCCCCCC--------CTC-CAAAT--AT--ACCCTATAAACA-AAT-TG--TTGCA-AAA---TT----TTGCAG----TC-TGAA-TC-ACCCGTGCGAATG-AA---T-T---TA--TA----------TTCA--A-TTATTTT-T-ATTT--G-AAT-AT---------ATTT-TTTTTtttagatgtctttat
gi|17 : t-TCCCGGGCGAA-A-AA---T-T---TA--AATTCAATTATATTCA--A-TTA-TTT-T-A-TT--TCAATCATA--------CTTT-TTTTTACTGGCAT-A---AT-CG--T-TGG---------------------------A-TCTT---CC-AC-TG-AAA-TCCA-T-A--TT-T---TATAAC--G
gi|18 : gC-AT--CAC-GTGGAAACCTC-AGATAAATTATAT-----C-CAAGTTCAGTG----GT-ACAACAG-ACCAAATGTT----AATTTACCG-------TTTCC---GC-ATTT-A-CTTCGTT--TTA--------TGATTT-GG
gi|2 : TGTGACCTGGG-ATAATTCGCGACCAGTAAATTGCCCGCT--TAATTGTATGAACAC---AGAAT----ACAA-GAGCTTTT-CTTGAAATGTTT-----------CAAA-CAAAAACACCCCCCCCCCCTAAAAAAAAA--TAAA-AA-AAAATATCAGAAAC-AA-AAACT-TATAAATCCAGTTTGGGGTAT-----------CATTTC-TAGATTCCGC-AACTTCAAAATCCTATG-AACTACAATCATAACATTTGCGAG-TAAT-CTTT-TCTGAGGC--A-ATCTG-GGGGTGGCGGCCCGTATAGATCTATAT-GA--AAATTGGGA--GTT-ATGGCGTACAT-ACAAATGCTTCTCCGTTCTAAAAGTGCGGGTATATGATACATGTATATATAGTGCTCCTCGATTACACTTTCTTCT-TTT-ACCA---GATAGATACA-CTCGAATGTACAAAA-TTCAA-ACTTT-C-TAAAAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTACCA---TGATACAAGTTAAAATTTTGAC-ATTCCAC-GTGGAAAC----AGGCTAATTATAT-----TTCAAGTTTAGTG----GTTACCACAGCATCAAA-GTT----AATTTACTAGTAC---TTTTCAAAGC-AGTTCCTCTCCATT--TTAT-------TGATTT-GGATGTTAT---TTTT-AATC--TTAACAA-C-ATGGTTTCAA-TTTAGTAATTAA-TT-TGC-CATTCA--ATTATTTC---------GCTTGAGATCAGCGTGCATTTT-C---TAT-ACA--GA-GTGGCCTTAATAAA-GGAGCAT----CAGGTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGGTACA-ACAATTAA-TTGTTATGTA----GTCAA-C-ACTTATATGTCC--------CCAGCT--G-----------------T--T--C------TA---T-TG-TAAG----TTGCTGTAGGCTTA---TATATTG-TATT-C--TCATCAGAAAA-ATA-CTGG-CAA---A-CG--CAG--TAGTT---AGGT-CT-AC-----AC--C-G-CAAGCGT-AACC--AAC-T-AAATGGGCNNNNNNNNNN-NN---NNN----N---NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNCCC-CAATTTCATTACGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TCTTAAACAA-TCCC-GGCGAA-A-AA---T-T---TA--AA---------ATTTA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTTGTTTTTCCTGACAT-A---AT-CG--T-TGA----A--T----AT--A--ACAACA-AA-ACTT---CCGAC-TG-AAATTCCA-T-A--TT-T---TGAAAC--GCAG-TAGA
gi|20 : ----GTCAA-C-ACTTGTATTTCC--------CGAGCT--GACAGCAAGCCTGTTATCT--T--C-C----CA---T-TG-TAAG----GTGCT-------T-----GTATTG-TATT-G--TCAT-AGAAAT-A-A-C
gi|21 : ----TT-CAG----TC-TAAA-AA-TCCCGGGCGTA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTA-T---TT--G-AATCAT----------TTT-TTTTT
gi|22 : ---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAttttaca
gi|3 : TGTG--CTGGGGATAAT--GGGAC-GGTAAATTGCC-GCT--TA-TTGTATG-ACAC---AGAAT----ATAA-GAGTTTTT-CTTGAAATGTTTT----------CAAA-C--AA-CACCCCCCCCC--------AAAA--TAAA-CA-AAA-TATCAGAAAC-AA-AA-CTATATAA--TCAGTG-GGAGTAT------------ATTTC-TAGAT-CCG----CCTCAAAATCAT-TG-AACTACAAT-ATAATATTTG-GAG-TA-T-TTTT-TCTGAG---CA----TCTGGGGTGG-----------GGTATATAT-GA--AAA--GGGA--GTTCA-GG-GTACAT----AATG--TCTCC-TTCT-AAAGTG-GGGTATAT-----AT-TATAT-AAGTACT-CTCGA-TACA----CTTCT-TTT-AGCATGCAAGATCTACA-CTCGAATGTACAAAA-TC--A-ACTTC-TACA---GTA--TATACAATGAT-CATTTGAT--GAACGCTGAAT-CTAC-----TGATA-AAG-TAAAATTTTGAC-AT--CAC--TGGAACTC---AGGT-AATTATA------TTCAAGTTTAGTG----GT-ACCACAG-ATCAAATGTT----AATTTTCTAGTAT---TTTCC---GC-ATTT---CTCAATT--TTA--------TGATTT-GGATGTTTT---ACACGAATC---TAACAA-C-ATGGTT-CAA-TTTAGTATTAAA-TT-TG--CATT----ATTATTTG---------G--TGAGATCAG-ATG-A-TTT-C---TATGA-A--G--GTGGC--TAA-AAA-GGAG-AT----CAG-TA-ATAAATTCCGTGT---ACACACAGTAcatctaccgcgacatcagtcaagctctgttta
gi|4 : cattaattgtcatgatatatgcttgcaaatattaggattaacagtacatccttgataaaaataaattgataaaacagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-ATTAA---ATTGT---AC-TA-AATGAT-TACTCAGTGAAA-TGG-A---A-AATTAAATT----TGTA----GTCAC-C-ACTTATATTTCCCATTGATACCAGCTGAG-----------------TTAT--C-A----TACAGT-TG-TAAGATTTCTGCT-------A----TGAATTG-TATT-CCTTCATCAGAAATAA-A-TTGG-CAA-G-ATCGCTCAGATTAGCTCAAAGGT-CTCAC-----ACAAC-GACGAGCAG-AACCCAAACATAAAATGGGCCTATGTTTGG-CT---TGTCACAT---TTAG-CAGTTTGACCCCGCCCCCGC----CCCCC-TAGA-TCATCAAGGCTATAAACA-ATGATGATTTG-A-AAAAG-TG----TT-CAGAGTCTC-TAAA-AA-TCCCGG-------------------------------------TA--A-CTA-------------G-GGTGATA--------AATT-GTTTTAC---CAT-AAGGATGCG--TATGGAAT-A--T----AT--A--GAAACA-AG-TCTTGCACCGAC-TGAAAA-TCCA-TAA--TT-TTAGTATATC--GCAGATAGA
gi|5 : ggtttctgTTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------CCAGCT--G-----------------TTAT--CAA----TA---T-TG-TAAG----TTGCT-------T----AAT-TTG-TATT----TCCT-AGAAAT-A-A-CTGG-CAA-G---CG--CAGA-TAGTA---GGGT-CT-AC-----AA--C-G-CGAGCGG-AACC--AAC-T-AAATGGGCTT---TTTGC-TT----GTCACAT---TTAGAAAGTTTGGCCCCACCCCCACCCCTCCCCC-CAAATTCA-TAAGCCTA-AAACATATT-TG--TTGAA-AAAAGTTG----TT-CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AAAATT-T---TA--AA---------ATTCAATA-TTA-TTT-TAA-TT--G-AATCAT---------ATTT-TTTTTTTTACCAT-A---AT-CG--T-TGGACATA--T----AT--A--ACAACA-AT-CTTT---CCAAC-TGAAAA-TCCA-T-AT-TT-T---TATAAT--GCAG--AGAgatataatctaccgcggcatcagtcaagcttctgttttatacttgcggaacgtaaacatggcg
gi|6 : tctgaataattgtacttaatcatATATTCTCAGTGAAA-TGG-ACA-A--AT-AA-TT----TGTACATAGTCAA-CCATTTATATT-CC--------CCAGCT--G-----------------T--TATC-G----TA---T-TGGTAAG----TTGCT-------T-----GTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-----A---C-G-CGAGCGT-AACC--AAC-T-AAATGGGCNNNNNNNNNN-NN---NNN----N---NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNCCC-CCAA-TCA-TACGCCTATAAACA-A-TATG--TTGAA-AAAAA-AT----TT-CAG----TC-T-AA-AA-TCCCGGGCGAA-A-CA---T-T---T---AA---------ATTCA--ATTTATTTT-T-A-TTTGA-AATCATA--------TTTT-TTTTTA-TGACAT-A---AT-CG--T-TGGA---A--T----ATAGA--ACAACA-AA-TCTT---CCGAC-TA-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGAtctaccgccgggcatcagttcaagctctgattttatttcaacggtaaacatggcg
gi|7 : A-ATTAA---T-TGT---AC------TAATATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----CGTA----GTCAA-C-ACTTATA-TTCC--------CCAGCT--G-----------------TTAT--C-A----TA---T-TG-TAAG----TTGC--------T----TGAATTG-TATT-C--TCAT-AGAAA--A-A-CTGG-CAA-G-A-CG--CAGA-TAGT-----AGT-CT-AC-----A---C-G-CGATCGG-AACC--AAC-T--AATGGGCT--TGTTTGC--T---CGTCACAT---TTAG-AAGTTTG---CCCCCCCCA------TCCC-CAA--TCA-TAAGCT--TAAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A--TA-TTT-T-ATTT--G-AATCATA--------ATTT-TTTTTAC---CAT-A---AT-CG--T-TGG----AATT----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCATT-A--TT-T-----TAAC--GCGG-TAGAtctaaccgcagcatcagtcaagctctgttta
gi|8 : ttctgATATTCTCAGTGTAC-TG-------CAAT-AA-TT----TGTA----GGCAAAC-A-TTATATA-CA--------TCAGCT--G-----------------T--T--T-AAATATA---T-TG-TAAG----TTGCT-------T----CGAAATG--GTT-T--TTA----AGAT-A-A--TGG-TGACG-A-CG--CAGA-TAGT----AGGT-CT-AC-----AC----G-CGAGAGA-GAAC--AGC-T-AAATGGACTTGTAGTTGCTGT---C-T----A---CTA-----TTTGA----------GTTGCTCCCCC-CAA--TCA-TAAACGTATAAA-A-ATACTG--TTG-A-AAAAG-TGTTAATT-CAA----TC-TAAA-AA-TTCGGGG---A-A-AA---TAT---TA--AA-----------TC---A-TTA-TTT-A-T-TT--G-AATCATA--------ATTT-ATTATAGCCATAT-A---TT-CG--T-TTG----AG-C----AT--AT-ATAATATAA-T-TT---ACGAC-TG--AA-TCGA---A---T-T---TATAACG-GCAG-TAGttaccgcggcatcagtcaagctctgttta
gi|9 : gtttctgacttattgtactA-ATTAA---T-TGT---ACA--------TATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCC--------CCAGCT--G-----------------TA-T--C-A----TA---T-TG-TAAG----TTGCT-------T----TA-ATTG-TATT-C--TCCT-AGAAAT-A-AACTGG-CAA-G---CG--CAGA-TAGT-----AGT-CT-AC-----AC----G-CGAGCGGGAACC--AAC-T-AAATGGGCTTTT--TTGC-TT----GT----ACATTTAG-AAGTTTGGCCCCACCCCCACCCCTCCCCCACAAAT-CAT-AAGCCTATAAACA-AT-ATG--TTGAA-AAAAG-TG----TT-CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTTAT-A-TT--G-AATCATA--------TTTT-TTTTTAC---CAT-A---AT-CG--T-TGGAT--A--T----AT--A--ACAACA-AA-TCTT---CCAACTTG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAGAtactaccggaaatcagtcaagctat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACAACACCCCCCCCCCAAAAAAAAACACACCAAAAAACAACAACAATAAAATCAACTACAATCAACTACAATTCCTAATTTCACTATTGCTTCAAAATTCCATTTTATAATAGATA
Unaligned ( gi|19 ): TCATTAAATTGTCATGATAAATGCGTTGCAATATTATGATTAAACAGTTACTGCTTGATAAAATAAATTGATATTAAATAGAAGTTAC
Unaligned ( gi|23 ): TGATTGATTGATTGTAATATATTGTTTTACGCCCCCCCCCCCCC
Unaligned ( gi|24 ): TTTGGTTGATTGATTATTTGTTGTTTAACGTCCC
Alignments
lowQualScore : 1 11 1 11 111 111 2222 1 4444444444 1 1111 22222 2222 1 2 1 111 1 555555555555 1 1 33 1 1 1 111 1 1 3333333 666666666666666 1 11 22 11 111 22 1 11 33333 555555555 1 111 1 3333 1 1111111 22222 11 1 11 11111 1 2222 1 1 11 11 22222 222222 1111 1 1 3333 111 111 111 11 333333333 22222222 111 1 2 1 1 1 1 1111 11 555555555555 1 1 1 111 22222 1 1 1 1 2222 1 22222 111 1111 111111111 11111111 666666666666666666666666666666 2222222222 1111 111 22222 22222222222 666666666666666666666666666 2222222 111 1111 2222222222222222222 111111111 1111111111 333333333333 111
lowQualScore : 2 6 88 3 7 6 88 7 777 777 1111 0 55 3 3333333333 0 3333 3 55555 3 4444 1 0 3 3 0 0 666 3 0 1 000000000000 0 0 55 88 0 6 9 3 777 3 3 6666666 88 444444444444444 3 88 00 88 777 00 3 6 88 6 11111 222222222 7 7 1 6 7 3 999 3 5555 3 0 1 8888888 88888 33 0 33 55555 0 0000 0 5 3 8 11 11 5 11111 1 3 000000 6 6 7777 8 1 2 3333 0 555 000 6 888 3 11 777777777 88 00000000 777 0 0 0 0 3 0 0 7777 2 33 333333333333 9 0 3 0 777 2 2 77777 0 3 0 0 0 1111 0 5 66666 000 2222 4 999999999 4 4 9999 8888 4 4 0 44444444 222222222222222222222222222222 777 4 4 8888 4 8888888888 4 1111 8 8 8 4 4 000 66 4 33333 4 4 33333333333 4 66 66 4 5 333333333333333333333333333 55 4 888888 777777 3 7777777 0 3 777 55 3 3 3333 7777 3 3 44 3 3 555 3 4444444444444444444 44 3 9 3 222222222 7777777777 6 999 3 666 3 88 3 555555555555 99999 3 3 000 3 6 3 3 3 77 3 555 77 4
lowQualScore : . . .. . . . .. . ... ... .... . .. . .......... . .... . ..... . .... . . . . . . ... . . . ............ . . .. .. . . . . ... . . ....... .. ............... . .. .. .. ... .. . . .. . ..... ......... . . . . . . ... . .... . . . ....... ..... .. . .. ..... . .... . . . . .. .. . ..... . . ...... . . .... . . . .... . ... ... . ... . .. ......... .. ........ ... . . . . . . . .... . .. ............ . . . . ... . . ..... . . . . . .... . . ..... ... .... . ......... . . .... .... . . . ........ .............................. ... . . .... . .......... . .... . . . . . ... .. . ..... . . ........... . .. .. . . ........................... .. . ...... ...... . ....... . . ... .. . . .... .... . . .. . . ... . ................... .. . . . ......... .......... . ... . ... . .. . ............ ..... . . ... . . . . . .. . ... .. .
lowQualScore : 0 7 33 3 3 7 33 3 777 555 2222 0 88 2 8888888888 0 2222 2 00000 2 8888 0 0 2 2 0 0 555 2 0 0 000000000000 0 0 55 22 0 5 0 3 777 3 3 7777777 33 777777777777777 3 33 77 33 777 00 3 7 33 7 77777 000000000 3 3 0 7 3 3 000 3 3333 2 0 0 5555555 22222 88 0 88 00000 0 8888 0 5 2 0 00 22 6 88888 4 8 888888 8 4 0000 0 4 0 1111 3 777 000 7 000 2 00 444444444 88 22222222 000 0 0 0 0 2 0 0 0000 5 88 888888888888 0 0 2 0 555 5 5 55555 0 2 0 0 0 2222 0 7 00000 000 3333 4 777777777 6 4 4444 5555 0 0 8 55555555 222222222222222222222222222222 000 0 0 5555 0 9999999999 0 1111 0 0 0 4 4 888 11 4 11111 4 4 22222222222 4 33 11 4 0 222222222222222222222222222 55 0 555555 111111 6 5555555 6 6 000 00 6 6 8888 1111 3 3 22 1 1 444 1 2222222222222222222 22 1 2 1 222222222 9999999999 2 666 6 444 6 66 6 777777777777 00000 6 6 444 3 7 3 3 3 99 3 888 99 0
consensus : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAAC-AAAACACCCCCCCCC-----AAAAAAA--TAAAANA-AAATATCAGAAAC-AA-AACT-TATAAATCCAG-TTGGNGTAT-----------CATTTC-TAGA-TCCGC-ACCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-T-AT-CTTT-TCTGAGG--CA-ATCTNTGGGGTGG--GGGC-------G-TATATAT-GA--AAA-TGGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAA-GTGCGGGTATAT-AT-----TATATAAAGTNCTCCTCGATTACAC-TTCTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TT--AAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTA-CA---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATTATAT-----TCCAAGTTCAGTG----G-TACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGG-TTCAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGG-CTTAA-AAA-GGAG-AT----CA-GTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-T-------TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGC--TT-TGT--TTGCTT---CGTC-CA-TT--TAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TGTT----CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
Reference ( family-3950 ) : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAAC-AAAACACCCCCCCCC-----AAAAAAA--T-AAANA-AAATATCAGAAAC-AA-AACT-TATAAATCCAG-TTGGNGTAT-----------CATTTC-TAGA-TCCGC-ACCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-T-AT-CTTT-TCTGAGGC-CA-ATCTNTGGGGTGG--GGGT-------GNTATATAT-GA--AAA-TGGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAAAGTGCGGGTATAT-AT-----TATATAAAGTNCTCCTCGATTACAC-TTCTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TT--AAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTA-CA---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATTATAT-----TTCAAGTTCAGTG----G-TACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGG-TTCAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGG-CTTAA-AAA-GGAG-AT----CA-GTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-T-------TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGC--TT-TGT--TTGCTT---CGT-----TT--TAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TGTT----CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
gi|1 : ACACGTAAGAATCATCGCAATGAGCTTTTTCTTGAAATGTTTTTGTTCTATAAC-AAAC-CCAACATATCCCCAA-----AAGAAAAGTT-AAAAC-AAGTATC-GAAACTAA-AACT--ATAAATCCAG-TTGGTGTGTTCGTGTACCTTCATTTCATAGA-TCCGC--CCTCAAAATCCAGTGGAACTT---TTATAGTATTTA-GGGAT-ATTCTCTATCTGAGGCTCATATCTTTGGGGTGGAGGGGT-------GTTATATATTGATGAAG-TGGGATTGTT-A-GG--TACATTACAAATG--TCTCCGTTCTAAA--T-TGGGTATA----------AT-TAAAGTTTTCCTCGATTACAC-TTCTTCTATTTGAGCA----AG-TCTACAGCTCGACTGTACAAAAATGCAATACTTCATT--AAGTCCCTCTACAATGCTTCATTTGATTCGAACGCG-AATTCTA-CA---TGATA-AAGT-AAAATTTTGACTAT--CACTGTGGAACCCTTCAGATAAGTTATAT-----TCAAGGTT--GTGAGACG-TACCTCAGTATCAAATGTTT--AATTTTACAAGTACCTGTTTTC---GCCATTTCC--TCCATTATTTATGTTGAAGTGATT---GATATTTT---ACAC-AATCCCTTAACAAGCGATGG-TTCAA-TT-AGTAATTAAATTATGCATGTTCAGGATTATTTCCTTACGGCTG--TACGATCAGTATG-ATTTT-CGTCTATGACA--GCTGTGG-CTAAA-AAAAGGAG-ATACTACA-GTATATTA----CGTGTTACACACGCAGTAATATTCTCAGTGAAAATGG-AAAGACAA---A-TT----TGTA----GTCAA-C-ACTTATATTTCCC----------GCTG-----------------TA-T--C-G----TA---TGTG-TAAG----TTGCT-T-------GATATTGTTATTAG--TCAT-AAGAATATA-CTGGCCAA-GAA-CGC--AGAT-AGTT---GAGTGCT-ACAACTAAC--CAG-CGAACGA-AACT--AAT-CAA
gi|1 : tgcacT-TCT--TCGCTC---TGTCCCAGTT--TAG-AGGTT------------CGCCCCCCCCCC-CAAAT-CAT-ACGCCTATAAACA-AT-A-G--TCGAA-AAAAG-TGTTT---CAG----TC-TAAA-A--TCCCGG-CGAA-G-AA--------------G---------ATTTA--A---A-TTC-T-A--------ATCATA---------TTT-TTTTTACTGACAT-A---AT-CGT-T-TGA----A--TATTAAT--A--ACCACA-GACTCTTTC-CTGAC-TG-AAA-TCT--T-C--TTGT---TATAAC--GCcagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccccccaaatcatacgcctataaacaatagtcgaaaaaagtgtttcagtctaaaatcccggcgaagaagatttaaattctaatcatattttttttactgacataatcgtttgaatattaataaccacagactctttcctgactgaaatcttcttgttataacgcgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|10 : tgcacacacgtaagaatcatcgcaatgagctttttcttgaaatgtttttgttctataacaaacccaacatatccccaaaagaaaagttaaaacaagtatcgaaactaaaactataaatccagttggtgtgttcgtgtaccttcatttcatagatccgccctcaaaatccagtggaacttttatagtatttagggatattctctatctgaggctcatatctttggggtggaggggtgttatatattgatgaagtgggattgttaggtacattacaaatgtctccgttctaaattgggtataattaaagttttcctcgattacacttcttctatttgagcaagtctacagctcgactgtacaaaaatgcaatacttcattaagtccctctacaatgcttcatttgattcgaacgcgaattctacatgataaagtaaaattttgactatcactgtggaacccttcagataagttatattcaaggttgtgagacgtacctcagtatcaaatgtttaattttacaagtacctgttttcgccatttcctccattatttatgttgaagtgattgatattttacacaatcccttaacaagcgatggttcaattagtaattaaattatgcatgttcaggattatttccttacggctgtacgatcagtatgattttcgtctatgacagctgtggctaaaaaaaggagatactacagtatattacgtgttacacacgcagtaatattctcagtgaaaatggaaagacaaatttgtagtcaacacttatatttcccgctgtatcgtatgtgtaagttgcttgatattgttattagtcataagaatatactggccaagaacgcagatagttgagtgctacaactaaccagcgaacgaaactaatcaacagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaaTATTCTCAGTGAAA-TG----A-ACAATTAA-TT----TGTA----GTCA--C-ACTTATATTTCCC--------CAGCTG-----------------T--TATT-G----TA---T-TG-TAAG----TTGCT-TGTAT---TGTATTG-TAAT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT----GGT-CT-AC-----A---C-G-CGAGC-T-AACC--AAC-TAAA-TGGGC----------NNNNNN---NNN-----NN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNAACA-A-TATG--TTGAA-AAAAG-TGTT----CAG----TC-TAAA-A----TCGGGCGAA-A-AA---T-T---T----A---------ATTAA--A-TTATTTT-T-ATTT--G-AAT-ATATTTTTTTTTTTT-TTTTTACTGACAT-A---AT-CG--T-TGG--------------------------AA-TCTT----CAAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|11 : TGTGGCCTGGGGATAAT--GGGAC-GGTAA-TTGCCCGCTATTAATTGTA--GACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------CAAAAC-AACAC-CCCCCCCCC-----AAAAAAA--TAAAACATAAATATCAG-AAC-AACAAC--TATAAATCCAG-TTGGTGTAT-----------CATTTC-TAGA-TCCGCTACTTCAAAATTCCATG-AACTATAAT-ATA
gi|11 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAG-ATCAAA-ATTTTAAAATTTACTAGTAC---TTTTC---tagatcaaaattttaaaatttactagtacttttcc
gi|12 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtggcctggggataatgggacggtaattgcccgctattaattgtagacacagaatgcaagagctttttcttgaaatgttttcaaaacaacaccccccccccaaaaaaataaaacataaatatcagaacaacaactataaatccagttggtgtatcatttctagatccgctacttcaaaattccatgaactataatatCCCCCCCCCCCCC-CA---TCAC-ACGCCTATAAACA-ATAGCT--CTGACCAAAAG-TGTG----CAG----TC-TAAA-AAATCCCGAGCGAC-ATAA---T-TATATACGAA---------GT--A--A-TTG-ATT-T-A-------AATCATA--------ATTTATTTTTATTTACATCA---AT-CGATC-TGA----A--T----AT--ATTACAACC-A--CCTT---CCGAC-TG-AAA-TCCA-T-ATTTT-T---TATAACCAGCAG-TAc
gi|13 : tttgattgattgattatttattgtttaacgt-ATCAAA-ATTTTAAAATTTACTAGTACT--TTTCC---GC-ATTTCC-CT-CATT--TTA--------TGATTTGGGATGTTTTTTAACCG-AATC--TAAACAA-CTATGG-TTCAATTTTAGTAATTAA-AT-TGC-ATTTCA--ATTATTTCG--------G--TGAGATCAG-ATG-ATTTTCC---TATGACAGTG--GTGG-CTTAA-AAG-GGAG-AT----CA-GTA-ATAAATTCCGTGT---ACACACAGttctaagaccaataagctctgttattatgcaacgtaaacttggcg
gi|14 : GATCTACA-CAATATTGTACAATG-TT-AG-ACTTC-T---AAGTA--TATCCGATTAT-CGTTTGAT--AAATGCT-G---CTA-CAACTTGATA-AAGTTAAG-TTTAAAC-TT--CAC-ATGGAAACCT---GCTAAACTGCATGTATATTCAAGTTCAGTG----G-TATCACCG-ATCAAATGCTGTACAAT------ATAT---TTTCC---GT-ATTT
gi|15 : T--TTGCTTTCACAA-----TT--TAG-AAGGTTTGCCCCCCCCCC--------CTC-CAAAT--AT--ACCCTATAAACA-AAT-TG--TTGCA-AAA---TTTTG---CAG----TC-TGAA-TC-ACCCGTGCGAATG-AA---T-T---TA--TA----------TTCA--A-TTATTTT-T-ATTT--G-AAT-AT---------ATTT-TTTTTtttagatgtctttat
gi|17 : t-TCCCGGGCGAA-A-AA---T-T---TA--AATTCAATTATATTCA--A-TTA-TTT-T-A-TT--TCAATCATA--------CTTT-TTTTTACTGGCAT-A---AT-CG--T-TGG---------------------------A-TCTT---CC-AC-TG-AAA-TCCA-T-A--TT-T---TATAAC--G
gi|18 : gC-AT--CAC-GTGGAAACCTC-AGATAAATTATA------TCCAAGTTCAGTG----G-TACAACAG-ACCAAATGTT----AATTTACCG-------TTTCC---GC-ATTT-A-CTTCGTT--TTA--------TGATTT-GG
gi|2 : TGTGACCTGGG-ATAATTCGCGACCAGTAAATTGCCCGC--TTAATTGTATGAACAC---AGAAT----ACAA-GAGC-TTTTCTTGAAATG-TTT----------C-AAACAAAAACACCCCCCCCCCCTAAAAAAAAA--TAAAAAA-AAATATCAGAAACAAA-AACT-TATAAATCCAGTTTGGGGTAT-----------CATTTC-TAGATTCCGCAACTTCAAAATCCTATG-AACTACAATCATAACATTTGCGAG-TAAT-CTTT-TCTGAGG--CA-ATCTG-GGGGTGG--CGGCCCGTATAGATCTATAT-GA--AAATTGGGA--GTT-ATGGCGTACAT-ACAAATGCTTCTCCGTTCTAAAAGTGCGGGTATATGATACATGTATATATAGTGCTCCTCGATTACACTTTCTTCT-TTT-ACCA---GATAGATACA-CTCGAATGTACAAAA-TTCAA-ACTTT-CTAAAAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTACCA---TGATACAAGTTAAAATTTTGAC-ATTCCAC-GTGGAAAC----AGGCTAATTATAT-----TTCAAGTTTAGTG----GTTACCACAGCATCAAA-GTT----AATTTACTAGTAC---TTTTCAAAGC-AGTTCCTCTCCATT--TTAT-------TGATTT-GGATGTTAT---TTTT-AATC--TTAACAA-C-ATGGTTTCAA-TTTAGTAATTAA-TT-TGC-CATTCA--ATTATTTC---------GCTTGAGATCAGCGTGCATTTT-C---TAT-ACA--GA-GTGGCCTTAATAAA-GGAGCAT----CAGGTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGGTACA-ACAATTAA-TTGTTATGTA----GTCAA-C-ACTTATATGTCCC--------CAGCTG-----------------T--T--C------TA---T-TG-TAAG----TTGCTGTAGGCTTATATATTG-TATT-C--TCATCAGAAAAATA-CTGG-CAA---A-CGC--AG-T-AGTT---AGGT-CT-AC-----AC--C-G-CAAGCGT-AACC--AAC-TAAA-TGGGCN-NN-NNN--NNNNNN---NNN-----NN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNCCC-CAATTTCATTACGCCTATAAACA-ATTATG--TTGAA-AAAAG-TGTT----CAG----TCTTAAACAA-TCCC-GGCGAA-A-AA---T-T---TA--AA---------ATTTA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTTGTTTTTCCTGACAT-A---AT-CG--T-TGA----A--T----AT--A--ACAACA-AA-ACTT---CCGAC-TG-AAATTCCA-T-A--TT-T---TGAAAC--GCAG-TAGA
gi|20 : ----GTCAA-C-ACTTGTATTTCCC--------GAGCTGACAGCAAGCCTGTTATCT--T--C-C----CA---T-TG-TAAG----GTGCT-T--------GTATTG-TATT-G--TCAT-AGAAATA-A-C
gi|21 : TT----CAG----TC-TAAA-AA-TCCCGGGCGTA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTA-T---TT--G-AATCAT----------TTT-TTTTT
gi|22 : ---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAttttaca
gi|3 : TGTG--CTGGGGATAAT--GGGAC-GGTAAATTGCC-GC--TTA-TTGTATG-ACAC---AGAAT----ATAA-GAG-TTTTTCTTGAAATGTTTT----------C-AAAC-AA--CACCCCCCCCC-----AAAA-----T-AAACA-AAATATCAGAAAC-AA-AACTATATAA--TCAG-TGGGAGTAT------------ATTTC-TAGA-TCCGC---CTCAAAATCAT-TG-AACTACAAT-ATAATATTTG-GAG-T-AT-TTTT-TCTGAG---CA----TCTGGGGTGG--GG-----------TATATAT-GA--AAA--GGGA--GTTCA-GG-GTACAT-A---ATG--TCTCC-TTCTAAA-GTG-GGGTATAT-AT-----TATATAA-GTACTC-TCGAT-ACAC-TTCTT----TT-AGCATGCAAGATCTACA-CTCGAATGTACAAAA-TC--A-ACTTC-TA--CAGTA--TATACAATGAT-CATTTGAT--GAACGCTGAAT-CTA-C----TGATA-AAGT-AAAATTTTGAC-AT--CAC--TGGAA-CTC--AGGTAA-TTATAT-----T-CAAGTTTAGTG----G-TACCACAG-ATCAAATGTT----AATTTTCTAGTAT---TTTCC---GC-ATTTC---TCAATT--TTAT--------GATTT-GGATGTTTT---ACACGAATC---TAACAA-C-ATGG-TTCAA-TTTAGTATTAAA-TT-TG--CATT----ATTATTTG---------G--TGAGATCAG-ATG-A-TTT-C---TATGA-A--G--GTGG-C-TAA-AAA-GGAG-AT----CA-GTA-ATAAATTCCGTGT---ACACACAGTAcatctaccgcgacatcagtcaagctctgttta
gi|4 : cattaattgtcatgatatatgcttgcaaatattaggattaacagtacatccttgataaaaataaattgataaaacagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-ATTAA---ATTGT---AC-TA-AATGAT-TACTCAGTGAAA-TGG-A---A-AATTAAATT----TGTA----GTCAC-C-ACTTATATTTCCCATTGATACCAGCTGAGT--------------TA-T--C-A----TACAGT-TG-TAAGATTTCTGCT-A-------TGAATTG-TATT-CCTTCATCAGAAATA-AATTGG-CAA-G-ATCGCTCAGATTAGCTCAAAGGT-CTCAC-----ACAAC-GACGAGCAG-AACCCAAACATAAAATGGGC--CTATGT--TTGGCT---TGTCACA-TT--TAG-CAGTTTGACCCCGCCCCCGCCCC----CC-TAGAT-CATCAAGGCTATAAACA-ATGATGATTTG-A-AAAAG-TGTT----CAGAGTCTC-TAAA-AA-TCCCGG-------------------------------------TA--A-CTA-------------G-GGTGATA--------AATT-GTTTTAC---CAT-AAGGATGCG--TATGGAAT-A--T----AT--A--GAAACA-AG-TCTTGCACCGAC-TGAAAA-TCCA-TAA--TT-TTAGTATATC--GCAGATAGA
gi|5 : ggtttctgTTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------TTAT--CAA----TA---T-TG-TAAG----TTGCT-T-------AAT-TTG-TATT----TCCT-AGAAATA-A-CTGG-CAA-G---CGC--AGAT-AGTA---GGGT-CT-AC-----AA--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGC--TT---T--TTGCTT----GTCACA-TT--TAGAAAGTTTGGCCCCACCCCCACCCCTCCCCC-CAAATTCA-TAAGCCTA-AAACATATT-TG--TTGAA-AAAAGTTGTT----CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AAAATT-T---TA--AA---------ATTCAATA-TTA-TTT-TAA-TT--G-AATCAT---------ATTT-TTTTTTTTACCAT-A---AT-CG--T-TGGACATA--T----AT--A--ACAACA-AT-CTTT---CCAAC-TGAAAA-TCCA-T-AT-TT-T---TATAAT--GCAG--AGAgatataatctaccgcggcatcagtcaagcttctgttttatacttgcggaacgtaaacatggcg
gi|6 : tctgaataattgtacttaatcatATATTCTCAGTGAAA-TGG-ACA-A--AT-AA-TT----TGTACATAGTCAA-CCATTTATATT-CCC--------CAGCTG-----------------T--TATC-G----TA---T-TGGTAAG----TTGCT-T--------GTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----A---C-G-CGAGCGT-AACC--AAC-TAAA-TGGGCNNNN-NNN--NNNNNN---NNN-----NN--NNN-NNNNNNNNNNNNNNNNNNNNNNNNNCCCC-CAA--TCA-TACGCCTATAAACA-A-TATG--TTGAA-AAAAA-ATTT----CAG----TC-T-AA-AA-TCCCGGGCGAA-A-CA---T-T---T---AA---------ATTCA--ATTTATTTT-T-A-TTTGA-AATCATA--------TTTT-TTTTTA-TGACAT-A---AT-CG--T-TGGA---A--T----ATAGA--ACAACA-AA-TCTT---CCGAC-TA-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGAtctaccgccgggcatcagttcaagctctgattttatttcaacggtaaacatggcg
gi|7 : A-ATTAA---T-TGT---AC------TAATATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----CGTA----GTCAA-C-ACTTATA-TTCCC--------CAGCTG-----------------TTAT--C-A----TA---T-TG-TAAG----TTGC--T-------TGAATTG-TATT-C--TCAT-AGAAA-A-A-CTGG-CAA-G-A-CGC--AGAT-AGT-----AGT-CT-AC-----A---C-G-CGATCGG-AACC--AAC-T-AA-TGGGC---T-TGT--TTGC-T---CGTCACA-TT--TAG-AAGTTTG---CCCCCCCCA------TCCC-CAA--TCA-TAAGCT--TAAACA-A-TATG--TTGAA-AAAAG-TGTT----CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A--TA-TTT-T-ATTT--G-AATCATA--------ATTT-TTTTTAC---CAT-A---AT-CG--T-TGG----AATT----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCATT-A--TT-T-----TAAC--GCGG-TAGAtctaaccgcagcatcagtcaagctctgttta
gi|8 : ttctgATATTCTCAGTGTAC-TG-------CAAT-AA-TT----TGTA----GGCAAAC-A-TTATATA-CAT--------CAGCTG-----------------T--T--T-AAATATA---T-TG-TAAG----TTGCT-T-------CGAAATG--GTT-T--TTA----AGATA-A--TGG-TGACG-A-CGC--AGAT-AGT----AGGT-CT-AC-----AC----G-CGAGAGA-GAAC--AGC-TAAA-TGGAC--TT--GTAGTTGCT-----GT-----CTACTA-----TTTGA----------GTTGCTCCCCC-CAA--TCAT-AAACGTATAAA-A-ATACTG--TTGAA-AAA-G-TGTTAATTCAA----TC-TAAA-AA-TTCGGGG---A-A-AA---TAT---TA--AA-----------TCA----TTA-TTT-A-T-TT--G-AATCATA--------ATTT-ATTATAGCCATAT-A---TT-CG--T-TTG----AG-C----AT--AT-ATAATATAA-T-TT---ACGAC-TG--AA-TCGA---A---T-T---TATAACG-GCAG-TAGttaccgcggcatcagtcaagctctgttta
gi|9 : gtttctgacttattgtactA-ATTAA---T-TGT---ACA--------TATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------TA-T--C-A----TA---T-TG-TAAG----TTGCT-T-------TA-ATTG-TATT-C--TCCT-AGAAATA-AACTGG-CAA-G---CGC--AGAT-AGT-----AGT-CT-AC-----AC----G-CGAGCGGGAACC--AAC-TAAA-TGGGC--TT-T-T--TTGCTT----GTACA--TT--TAG-AAGTTTGGCCCCACCCCCACCCCTCCCCCACAAAT-CAT-AAGCCTATAAACA-AT-ATG--TTGAA-AAAAG-TGTT----CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTTAT-A-TT--G-AATCATA--------TTTT-TTTTTAC---CAT-A---AT-CG--T-TGGAT--A--T----AT--A--ACAACA-AA-TCTT---CCAACTTG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAGAtactaccggaaatcagtcaagctat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACAACACCCCCCCCCCAAAAAAAAACACACCAAAAAACAACAACAATAAAATCAACTACAATCAACTACAATTCCTAATTTCACTATTGCTTCAAAATTCCATTTTATAATAGATA
Unaligned ( gi|19 ): TCATTAAATTGTCATGATAAATGCGTTGCAATATTATGATTAAACAGTTACTGCTTGATAAAATAAATTGATATTAAATAGAAGTTAC
Unaligned ( gi|23 ): TGATTGATTGATTGTAATATATTGTTTTACGCCCCCCCCCCCCC
Unaligned ( gi|24 ): TTTGGTTGATTGATTATTTGTTGTTTAACGTCCC
Alignments
lowQualScore : 1 11 1 11 111 111 2222 1 4444444444 1 1111 22222 11 1 2 1 111 1 555555555555 1 1 33 1 1 1 111 1 1 33333 666666666666666666 1 11 22 11 111 22 1 11 1 2 555555555 1 111 1 3333 1 1111111 22222 11 1 11 11111 1 2222 1 1 11 11 22222 222222 1 1111 1 1 3333 111 111 111 11 333333333 22222222 111 1 2 1 1 1 1 1111 11 555555555555 1 1 1 111 22222 1 1 1 1 2222 1 22222 111 1111 111111111 11111111 666666666666666666666666666666 2222222222 1111 111 22222 22222222222 33333333 111 1111 2222222 111 2222222222222222222 111111111 1111111111 333333333333 111
lowQualScore : 2 6 88 3 7 6 88 7 777 777 1111 0 55 3 3333333333 0 3333 3 55555 3 33 44 0 3 3 3 0 0 666 3 0 1 000000000000 0 0 55 88 0 6 9 3 777 3 3 6 00000 88 777777777777777777 3 88 00 88 777 00 3 6 88 6 3 3 222222222 7 7 1 6 7 3 999 3 5555 3 0 1 8888888 88888 33 0 33 55555 0 0000 0 5 3 8 11 11 5 11111 1 3 333333 0 5 6 7777 8 1 2 3333 0 555 000 6 888 3 11 777777777 88 00000000 777 0 0 0 0 3 0 0 7777 2 33 333333333333 9 0 3 0 777 2 2 77777 0 3 0 0 0 1111 0 5 66666 000 2222 4 999999999 4 4 9999 8888 4 4 0 44444444 222222222222222222222222222222 777 4 4 8888 4 8888888888 4 1111 8 8 8 4 4 000 66 4 33333 4 4 33333333333 4 66 66 4 5 44444444 111 4444 4 888888 777777 3 7777777 0 3 777 55 3 3 7777 6 7777 3 3 44 3 3 555 3 4444444444444444444 44 3 9 3 222222222 7777777777 6 999 3 666 3 88 3 555555555555 99999 3 3 000 3 6 3 3 3 77 3 555 77 4
lowQualScore : . . .. . . . .. . ... ... .... . .. . .......... . .... . ..... . .. .. . . . . . . ... . . . ............ . . .. .. . . . . ... . . . ..... .. .................. . .. .. .. ... .. . . .. . . . ......... . . . . . . ... . .... . . . ....... ..... .. . .. ..... . .... . . . . .. .. . ..... . . ...... . . . .... . . . .... . ... ... . ... . .. ......... .. ........ ... . . . . . . . .... . .. ............ . . . . ... . . ..... . . . . . .... . . ..... ... .... . ......... . . .... .... . . . ........ .............................. ... . . .... . .......... . .... . . . . . ... .. . ..... . . ........... . .. .. . . ........ ... .... . ...... ...... . ....... . . ... .. . . .... . .... . . .. . . ... . ................... .. . . . ......... .......... . ... . ... . .. . ............ ..... . . ... . . . . . .. . ... .. .
lowQualScore : 0 7 33 3 3 7 33 3 777 555 2222 0 88 2 8888888888 0 2222 2 00000 2 88 22 0 2 2 2 0 0 555 2 0 0 000000000000 0 0 55 22 0 5 0 3 777 3 3 7 00000 33 333333333333333333 3 33 77 33 777 00 3 7 33 7 3 3 000000000 3 3 0 7 3 3 000 3 3333 2 0 0 5555555 22222 88 0 88 00000 0 8888 0 5 2 0 00 22 6 88888 4 8 000000 8 0 4 0000 0 4 0 1111 3 777 000 7 000 2 00 444444444 88 22222222 000 0 0 0 0 2 0 0 0000 5 88 888888888888 0 0 2 0 555 5 5 55555 0 2 0 0 0 2222 0 7 00000 000 3333 4 777777777 6 4 4444 5555 0 0 8 55555555 222222222222222222222222222222 000 0 0 5555 0 9999999999 0 1111 0 0 0 4 4 888 11 4 11111 4 4 22222222222 4 33 11 4 0 00000000 444 9999 0 555555 111111 6 5555555 6 6 000 00 6 6 1111 7 1111 3 3 22 1 1 444 1 2222222222222222222 22 1 2 1 222222222 9999999999 2 666 6 444 6 66 6 777777777777 00000 6 6 444 3 7 3 3 3 99 3 888 99 0
consensus : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAAC-AAAACACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AACT-TATAAATCCAG-TTGGNGTAT-----------CATTTC-TAGA-TCCGC-ACCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-T-AT-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGG--CGT-A------TATAT-GA--AAA-TGGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCT-AAAGTG-GGGTATAT-AT-----TATATAAAGTNCTCCTCGATTACAC-TTCTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TT--AAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTA-CA---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATT------ATATTCCAAGTTCAGTG----G-TACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGG-TTCAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGG-CTTAA-AAA-GGAG-AT----CA-GTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-T-------TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGC-T-TGT--TTGCTTTGTC-C--ATTTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
Reference ( family-3950 ) : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAAC-AAAACACCCCCCCCC-----AAAAAAA--TAAAANA-AAATATCAGAAAC-AA-AACT-TATAAATCCAG-TTGGNGTAT-----------CATTTC-TAGA-TCCGC-ACCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-T-AT-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGG--CGT-A------TATAT-GA--AAA-TGGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCT-AAAGTGCGGGTATAT-AT-----TATATAAAGTNCTCCTCGATTACAC-TTCTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TT--AAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTA-CA---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATT------ATATTCCAAGTTCAGTG----G-TACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGG-TTCAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGG-CTTAA-AAA-GGAG-AT----CA-GTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-T-------TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT-TGT--TTGCTTCGTC-C--ATTTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
gi|1 : ACACGTAAGAATCATCGCAATGAGCTTTTTCTTGAAATGTTTTTGTTCTATAAC-AAAC-CCAACATATCCCCAA-----AAGAAAAGTTAAAACA-AG-TATC-GAAACTAA-AACT--ATAAATCCAG-TTGGTGTGTTCGTGTACCTTCATTTCATAGA-TCCGC--CCTCAAAATCCAGTGGAACTT---TTATAGTATTTA-GGGAT-ATTCTCTATCTGAGGCTCATATCTTTGGGGTGGAGGGG--TGTTA------TATATTGATGAAG-TGGGATTGTT-A-GG--TACATTACAAATG--TCTCCGTTCT-AAATTG--GGTATA----------AT-TAAAGTTTTCCTCGATTACAC-TTCTTCTATTTGAGCA----AG-TCTACAGCTCGACTGTACAAAAATGCAATACTTCATT--AAGTCCCTCTACAATGCTTCATTTGATTCGAACGCG-AATTCTA-CA---TGATA-AAGT-AAAATTTTGACTAT--CACTGTGGAACCCTTCAGATAAGTT------ATATTCAAGGTT--GTGAGACG-TACCTCAGTATCAAATGTTT--AATTTTACAAGTACCTGTTTTC---GCCATTTCC--TCCATTATTTATGTTGAAGTGATT---GATATTTT---ACAC-AATCCCTTAACAAGCGATGG-TTCAA-TT-AGTAATTAAATTATGCATGTTCAGGATTATTTCCTTACGGCTG--TACGATCAGTATG-ATTTT-CGTCTATGACA--GCTGTGG-CTAAA-AAAAGGAG-ATACTACA-GTATATTA----CGTGTTACACACGCAGTAATATTCTCAGTGAAAATGG-AAAGACAA---A-TT----TGTA----GTCAA-C-ACTTATATTTCCC----------GCTG-----------------TA-T--C-G----TA---TGTG-TAAG----TTGCT-T-------GATATTGTTATTAG--TCAT-AAGAATATA-CTGGCCAA-GAA-CGC--AGAT-AGTT---GAGTGCT-ACAACTAAC--CAG-CGAACGA-AACT--AAT-CAA
gi|1 : tgcacT-TCT--TCGCTCTGTC-CCAGTTTAG-AGGTT------------CGCCCCCCCCCC-CAAAT-CAT-ACGCCTATAAACA-AT-A-G--TCGAA-AAAAG-TG----TTTCAG----TC-TAAA-A--TCCCGG-CGAA-G-AA--------------G---------ATTTA--A---A-TTC-T-A--------ATCATA---------TTT-TTTTTACTGACAT-A---AT-CGT-T-TGA----A--TATTAAT--A--ACCACA-GACTCTTTC-CTGAC-TG-AAA-TCT--T-C--TTGT---TATAAC--GCcagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccccccaaatcatacgcctataaacaatagtcgaaaaaagtgtttcagtctaaaatcccggcgaagaagatttaaattctaatcatattttttttactgacataatcgtttgaatattaataaccacagactctttcctgactgaaatcttcttgttataacgcgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|10 : tgcacacacgtaagaatcatcgcaatgagctttttcttgaaatgtttttgttctataacaaacccaacatatccccaaaagaaaagttaaaacaagtatcgaaactaaaactataaatccagttggtgtgttcgtgtaccttcatttcatagatccgccctcaaaatccagtggaacttttatagtatttagggatattctctatctgaggctcatatctttggggtggaggggtgttatatattgatgaagtgggattgttaggtacattacaaatgtctccgttctaaattgggtataattaaagttttcctcgattacacttcttctatttgagcaagtctacagctcgactgtacaaaaatgcaatacttcattaagtccctctacaatgcttcatttgattcgaacgcgaattctacatgataaagtaaaattttgactatcactgtggaacccttcagataagttatattcaaggttgtgagacgtacctcagtatcaaatgtttaattttacaagtacctgttttcgccatttcctccattatttatgttgaagtgattgatattttacacaatcccttaacaagcgatggttcaattagtaattaaattatgcatgttcaggattatttccttacggctgtacgatcagtatgattttcgtctatgacagctgtggctaaaaaaaggagatactacagtatattacgtgttacacacgcagtaatattctcagtgaaaatggaaagacaaatttgtagtcaacacttatatttcccgctgtatcgtatgtgtaagttgcttgatattgttattagtcataagaatatactggccaagaacgcagatagttgagtgctacaactaaccagcgaacgaaactaatcaacagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaaTATTCTCAGTGAAA-TG----A-ACAATTAA-TT----TGTA----GTCA--C-ACTTATATTTCCC--------CAGCTG-----------------T--TATT-G----TA---T-TG-TAAG----TTGCT-TGTAT---TGTATTG-TAAT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT----GGT-CT-AC-----A---C-G-CGAGC-T-AACC--AAC-TAAA-TGGGC-----------NNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-A----TCGGGCGAA-A-AA---T-T---T----A---------ATTAA--A-TTATTTT-T-ATTT--G-AAT-ATATTTTTTTTTTTT-TTTTTACTGACAT-A---AT-CG--T-TGG--------------------------AA-TCTT----CAAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|11 : TGTGGCCTGGGGATAAT--GGGAC-GGTAA-TTGCCCGCTATTAATTGTA--GACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------CAAAAC-AACAC-CCCCCCCCC-----AAAAAAA--TAAAACATAAATATCAG-AAC-AACAAC--TATAAATCCAG-TTGGTGTAT-----------CATTTC-TAGA-TCCGCTACTTCAAAATTCCATG-AACTATAAT-ATA
gi|11 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAG-ATCAAA-ATTTTAAAATTTACTAGTAC---TTTTC---tagatcaaaattttaaaatttactagtacttttcc
gi|12 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtggcctggggataatgggacggtaattgcccgctattaattgtagacacagaatgcaagagctttttcttgaaatgttttcaaaacaacaccccccccccaaaaaaataaaacataaatatcagaacaacaactataaatccagttggtgtatcatttctagatccgctacttcaaaattccatgaactataatatCCCCCCCCCCCCC-CA---TCAC-ACGCCTATAAACA-ATAGCT--CTGACCAAAAG-TG----TG-CAG----TC-TAAA-AAATCCCGAGCGAC-ATAA---T-TATATACGAA---------GT--A--A-TTG-ATT-T-A-------AATCATA--------ATTTATTTTTATTTACATCA---AT-CGATC-TGA----A--T----AT--ATTACAACC-A--CCTT---CCGAC-TG-AAA-TCCA-T-ATTTT-T---TATAACCAGCAG-TAc
gi|13 : tttgattgattgattatttattgtttaacgt-ATCAAA-ATTTTAAAATTTACTAGTACT--TTTCC---GC-ATTTCC-CT-CATT--TTA--------TGATTTGGGATGTTTTTTAACCG-AATC--TAAACAA-CTATGG-TTCAATTTTAGTAATTAA-AT-TGC-ATTTCA--ATTATTTCG--------G--TGAGATCAG-ATG-ATTTTCC---TATGACAGTG--GTGG-CTTAA-AAG-GGAG-AT----CA-GTA-ATAAATTCCGTGT---ACACACAGttctaagaccaataagctctgttattatgcaacgtaaacttggcg
gi|14 : GATCTACA-CAATATTGTACAATG-TT-AG-ACTTC-T---AAGTA--TATCCGATTAT-CGTTTGAT--AAATGCT-G---CTA-CAACTTGATA-AAGTTAAG-TTTAAAC-TT--CAC-ATGGAAACCT---GCTAAACTGCATGTATATTC-AAGTTCAGTG----G-TATCACCG-ATCAAATGCTGTACAAT------ATAT---TTTCC---GT-ATTT
gi|15 : T--TTGCTTTCAC-A--ATTTAG-AAGGTTTGCCCCCCCCCC--------CTC-CAAAT--AT--ACCCTATAAACA-AAT-TG--TTGCA-AAA---TT----TTGCAG----TC-TGAA-TC-ACCCGTGCGAATG-AA---T-T---TA--TA----------TTCA--A-TTATTTT-T-ATTT--G-AAT-AT---------ATTT-TTTTTtttagatgtctttat
gi|17 : t-TCCCGGGCGAA-A-AA---T-T---TA--AATTCAATTATATTCA--A-TTA-TTT-T-A-TT--TCAATCATA--------CTTT-TTTTTACTGGCAT-A---AT-CG--T-TGG---------------------------A-TCTT---CC-AC-TG-AAA-TCCA-T-A--TT-T---TATAAC--G
gi|18 : gC-AT--CAC-GTGGAAACCTC-AGATAAATT------ATA-TCCAAGTTCAGTG----G-TACAACAG-ACCAAATGTT----AATTTACCG-------TTTCC---GC-ATTT-A-CTTCGTT--TTA--------TGATTT-GG
gi|2 : TGTGACCTGGG-ATAATTCGCGACCAGTAAATTGCCCGC--TTAATTGTATGAACAC---AGAAT----ACAA-GAGC-TTTTCTTGAAATG-TTT----------C-AAACAAAAACACCCCCCCCCCCTAAAAAAAAA--TAAAAAA-AAATATCAGAAACAAA-AACT-TATAAATCCAGTTTGGGGTAT-----------CATTTC-TAGATTCCGCAACTTCAAAATCCTATG-AACTACAATCATAACATTTGCGAG-TAAT-CTTT-TCTGAGGC--A-ATCTG-GGGGTGG--CGGCCCGT-ATAGATCTATAT-GA--AAATTGGGA--GTT-ATGGCGTACAT-ACAAATGCTTCTCCGTTCTAAAAGTGCGGGTATATGATACATGTATATATAGTGCTCCTCGATTACACTTTCTTCT-TTT-ACCA---GATAGATACA-CTCGAATGTACAAAA-TTCAA-ACTTT-CTAAAAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTACCA---TGATACAAGTTAAAATTTTGAC-ATTCCAC-GTGGAAAC----AGGCTAATT------ATATTTCAAGTTTAGTG----GTTACCACAGCATCAAA-GTT----AATTTACTAGTAC---TTTTCAAAGC-AGTTCCTCTCCATT--TTAT-------TGATTT-GGATGTTAT---TTTT-AATC--TTAACAA-C-ATGGTTTCAA-TTTAGTAATTAA-TT-TGC-CATTCA--ATTATTTC---------GCTTGAGATCAGCGTGCATTTT-C---TAT-ACA--GA-GTGGCCTTAATAAA-GGAGCAT----CAGGTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGGTACA-ACAATTAA-TTGTTATGTA----GTCAA-C-ACTTATATGTCCC--------CAGCTG-----------------T--T--C------TA---T-TG-TAAG----TTGCTGTAGGCTTATATATTG-TATT-C--TCATCAGAAAAATA-CTGG-CAA---A-CGC--AG-T-AGTT---AGGT-CT-AC-----AC--C-G-CAAGCGT-AACC--AAC-TAAA-TGGGC---NNN--NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNCCC-CAATTTCATTACGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TCTTAAACAA-TCCC-GGCGAA-A-AA---T-T---TA--AA---------ATTTA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTTGTTTTTCCTGACAT-A---AT-CG--T-TGA----A--T----AT--A--ACAACA-AA-ACTT---CCGAC-TG-AAATTCCA-T-A--TT-T---TGAAAC--GCAG-TAGA
gi|20 : ----GTCAA-C-ACTTGTATTTCCC--------GAGCTGACAGCAAGCCTGTTATCT--T--C-C----CA---T-TG-TAAG----GTGCT-T--------GTATTG-TATT-G--TCAT-AGAAATA-A-C
gi|21 : ----TT-CAG----TC-TAAA-AA-TCCCGGGCGTA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTA-T---TT--G-AATCAT----------TTT-TTTTT
gi|22 : ---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAttttaca
gi|3 : TGTG--CTGGGGATAAT--GGGAC-GGTAAATTGCC-GC--TTA-TTGTATG-ACAC---AGAAT----ATAA-GAG-TTTTTCTTGAAATGTTTT----------C-AAAC-AA--CACCCCCCCCC-----AAAA-----TAAA-CA-AAATATCAGAAAC-AA-AACTATATAA--TCAG-TGGGAGTAT------------ATTTC-TAGA-TCCGC---CTCAAAATCAT-TG-AACTACAAT-ATAATATTTG-GAG-T-AT-TTTT-TCTGAG-C--A----TCTGGGGTGG--GG-----T-A------TATAT-GA--AAA--GGGA--GTTCA-GG-GTACAT-A---ATG--TCTCC-TTCT-AAAGTG-GGGTATAT-AT-----TATATAA-GTACTC-TCGAT-ACAC-TTCTT----TT-AGCATGCAAGATCTACA-CTCGAATGTACAAAA-TC--A-ACTTC-TA--CAGTA--TATACAATGAT-CATTTGAT--GAACGCTGAAT-CTA-C----TGATA-AAGT-AAAATTTTGAC-AT--CAC--TGGAA-CTC--AGGTAA-TT------ATATTC-AAGTTTAGTG----G-TACCACAG-ATCAAATGTT----AATTTTCTAGTAT---TTTCC---GC-ATTTC---TCAATT--TTAT--------GATTT-GGATGTTTT---ACACGAATC---TAACAA-C-ATGG-TTCAA-TTTAGTATTAAA-TT-TG--CATT----ATTATTTG---------G--TGAGATCAG-ATG-A-TTT-C---TATGA-A--G--GTGG-C-TAA-AAA-GGAG-AT----CA-GTA-ATAAATTCCGTGT---ACACACAGTAcatctaccgcgacatcagtcaagctctgttta
gi|4 : cattaattgtcatgatatatgcttgcaaatattaggattaacagtacatccttgataaaaataaattgataaaacagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-ATTAA---ATTGT---AC-TA-AATGAT-TACTCAGTGAAA-TGG-A---A-AATTAAATT----TGTA----GTCAC-C-ACTTATATTTCCCATTGATACCAGCTGAGT--------------TA-T--C-A----TACAGT-TG-TAAGATTTCTGCT-A-------TGAATTG-TATT-CCTTCATCAGAAATA-AATTGG-CAA-G-ATCGCTCAGATTAGCTCAAAGGT-CTCAC-----ACAAC-GACGAGCAG-AACCCAAACATAAAATGGGCCTATGT--TTGGCTTGTCAC--ATTTAG-CAGTTTGACCCCGCCCCCGCCCC----CC-TAGAT-CATCAAGGCTATAAACA-ATGATGATTTGAA-AAA-G-TG----TT-CAGAGTCTC-TAAA-AA-TCCCGG-------------------------------------TA--A-CTA-------------G-GGTGATA--------AATT-GTTTTAC---CAT-AAGGATGCG--TATGGAAT-A--T----AT--A--GAAACA-AG-TCTTGCACCGAC-TGAAAA-TCCA-TAA--TT-TTAGTATATC--GCAGATAGA
gi|5 : ggtttctgTTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------TTAT--CAA----TA---T-TG-TAAG----TTGCT-T-------AAT-TTG-TATT----TCCT-AGAAATA-A-CTGG-CAA-G---CGC--AGAT-AGTA---GGGT-CT-AC-----AA--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT---T--TTGCTT-GTCAC--ATTTAGAAAGTTTGGCCCCACCCCCACCCCTCCCCC-CAAATTCA-TAAGCCTA-AAACATATT-TG--TTGAA-AAAAGTTG----TT-CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AAAATT-T---TA--AA---------ATTCAATA-TTA-TTT-TAA-TT--G-AATCAT---------ATTT-TTTTTTTTACCAT-A---AT-CG--T-TGGACATA--T----AT--A--ACAACA-AT-CTTT---CCAAC-TGAAAA-TCCA-T-AT-TT-T---TATAAT--GCAG--AGAgatataatctaccgcggcatcagtcaagcttctgttttatacttgcggaacgtaaacatggcg
gi|6 : tctgaataattgtacttaatcatATATTCTCAGTGAAA-TGG-ACA-A--AT-AA-TT----TGTACATAGTCAA-CCATTTATATT-CCC--------CAGCTG-----------------T--TATC-G----TA---T-TGGTAAG----TTGCT-T--------GTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----A---C-G-CGAGCGT-AACC--AAC-TAAA-TGGGC-N-NNN--NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNCCCC-CAA--TCA-TACGCCTATAAACA-A-TATG--TTGAA-AAAAA-AT----TT-CAG----TC-T-AA-AA-TCCCGGGCGAA-A-CA---T-T---T---AA---------ATTCA--ATTTATTTT-T-A-TTTGA-AATCATA--------TTTT-TTTTTA-TGACAT-A---AT-CG--T-TGGA---A--T----ATAGA--ACAACA-AA-TCTT---CCGAC-TA-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGAtctaccgccgggcatcagttcaagctctgattttatttcaacggtaaacatggcg
gi|7 : A-ATTAA---T-TGT---AC------TAATATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----CGTA----GTCAA-C-ACTTATA-TTCCC--------CAGCTG-----------------TTAT--C-A----TA---T-TG-TAAG----TTGC--T-------TGAATTG-TATT-C--TCAT-AGAAA-A-A-CTGG-CAA-G-A-CGC--AGAT-AGT-----AGT-CT-AC-----A---C-G-CGATCGG-AACC--AAC-T-AA-TGGGC-T-TGT--TTGC-TCGTCAC--ATTTAG-AAGTTTG---CCCCCCCCA------TCCC-CAA--TCA-TAAGCT--TAAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A--TA-TTT-T-ATTT--G-AATCATA--------ATTT-TTTTTAC---CAT-A---AT-CG--T-TGG----AATT----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCATT-A--TT-T-----TAAC--GCGG-TAGAtctaaccgcagcatcagtcaagctctgttta
gi|8 : ttctgATATTCTCAGTGTAC-TG-------CAAT-AA-TT----TGTA----GGCAAAC-A-TTATATA-CAT--------CAGCTG-----------------T--T--T-AAATATA---T-TG-TAAG----TTGCT-T-------CGAAATG--GTT-T--TTA----AGATA-A--TGG-TGACG-A-CGC--AGAT-AGT----AGGT-CT-AC-----AC----G-CGAGAGA-GAAC--AGC-TAAA-TGGAC-T-TGTAGTTGCT--GTC-T--ACT------ATTTGA----------GTTGCTCCCCC-CAA--TCA-TAAACGTATAAA-A-ATACTG--TTG-A-AAAAG-TGTTAATT-CAA----TC-TAAA-AA-TTCGGGG---A-A-AA---TAT---TA--AA-----------TC---A-TTA-TTT-A-T-TT--G-AATCATA--------ATTT-ATTATAGCCATAT-A---TT-CG--T-TTG----AG-C----AT--AT-ATAATATAA-T-TT---ACGAC-TG--AA-TCGA---A---T-T---TATAACG-GCAG-TAGttaccgcggcatcagtcaagctctgttta
gi|9 : gtttctgacttattgtactA-ATTAA---T-TGT---ACA--------TATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------TA-T--C-A----TA---T-TG-TAAG----TTGCT-T-------TA-ATTG-TATT-C--TCCT-AGAAATA-AACTGG-CAA-G---CGC--AGAT-AGT-----AGT-CT-AC-----AC----G-CGAGCGGGAACC--AAC-TAAA-TGGGCTT-T-T--TTGCTT-GTA-C--ATTTAG-AAGTTTGGCCCCACCCCCACCCCTCCCCCACAAAT-CAT-AAGCCTATAAACA-AT-ATG--TTGAA-AAAAG-TG----TT-CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTTAT-A-TT--G-AATCATA--------TTTT-TTTTTAC---CAT-A---AT-CG--T-TGGAT--A--T----AT--A--ACAACA-AA-TCTT---CCAACTTG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAGAtactaccggaaatcagtcaagctat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACAACACCCCCCCCCCAAAAAAAAACACACCAAAAAACAACAACAATAAAATCAACTACAATCAACTACAATTCCTAATTTCACTATTGCTTCAAAATTCCATTTTATAATAGATA
Unaligned ( gi|19 ): TCATTAAATTGTCATGATAAATGCGTTGCAATATTATGATTAAACAGTTACTGCTTGATAAAATAAATTGATATTAAATAGAAGTTAC
Unaligned ( gi|23 ): TGATTGATTGATTGTAATATATTGTTTTACGCCCCCCCCCCCCC
Unaligned ( gi|24 ): TTTGGTTGATTGATTATTTGTTGTTTAACGTCCC
Alignments
lowQualScore : 1 11 1 11 111 111 2222 1 44444444444 1 111 22222 11 1 1 1 1 111 1 555555555555 1 1 333 1 1 1 1 111 1 33333 44444444444444444444 1 11 22 11 111 22 1 11 1 1 44444444 1 111 1 3333 1 1111111 1111111 11 1 11 11111 33333 1 1 11 11 22222 222222 1 1111 1 1 3333 111 111 111 11 333333333 22222222 111 1 2 1 1 1 1 1111 11 555555555555 1 1 1 111 22222 11 1 1 1 2222 1 22222 111 1111 111111111 11111111 666666666666666666666666666666 222222222222222 1111 111 22222 22222222222 111111 1 1111 2222222 111 222222222222222222 111111111 1111111111 333333333333 111
lowQualScore : 2 6 88 3 7 6 88 7 777 777 1111 0 2 3 77777777777 0 666 3 55555 3 33 3 0 3 3 3 0 0 0 666 3 0 1 000000000000 0 0 555 88 0 6 9 3 3 777 3 6 00000 88 99999999999999999999 3 88 00 88 777 00 3 6 88 6 3 3 6 55555555 7 7 1 6 7 3 999 3 5555 3 0 1 8888888 6666666 33 0 33 55555 00000 0 5 3 8 11 11 5 11111 1 3 333333 0 5 6 7777 8 1 2 3333 0 555 000 6 888 3 11 777777777 88 00000000 777 0 0 0 0 3 0 0 7777 2 33 333333333333 9 0 3 0 777 2 2 77777 33 0 0 0 1111 0 5 66666 000 2222 4 999999999 4 4 9999 8888 4 4 0 44444444 222222222222222222222222222222 777 4 4 8888 666666666666666 4 1111 8 8 8 4 4 000 66 4 33333 4 4 33333333333 4 66 66 4 5 0 333333 0 0 4444 4 888888 2 33 5 3 7777777 0 3 777 55 3 3 7777 6 7777 3 3 44 3 3 555 3 666666666666666666 44 3 9 3 222222222 7777777777 6 999 3 666 3 88 3 555555555555 99999 3 3 000 3 6 3 3 3 77 3 555 77 4
lowQualScore : . . .. . . . .. . ... ... .... . . . ........... . ... . ..... . .. . . . . . . . . ... . . . ............ . . ... .. . . . . . ... . . ..... .. .................... . .. .. .. ... .. . . .. . . . . ........ . . . . . . ... . .... . . . ....... ....... .. . .. ..... ..... . . . . .. .. . ..... . . ...... . . . .... . . . .... . ... ... . ... . .. ......... .. ........ ... . . . . . . . .... . .. ............ . . . . ... . . ..... .. . . . .... . . ..... ... .... . ......... . . .... .... . . . ........ .............................. ... . . .... ............... . .... . . . . . ... .. . ..... . . ........... . .. .. . . . ...... . . .... . ...... . .. . . ....... . . ... .. . . .... . .... . . .. . . ... . .................. .. . . . ......... .......... . ... . ... . .. . ............ ..... . . ... . . . . . .. . ... .. .
lowQualScore : 0 7 33 3 3 7 33 3 777 555 2222 0 5 2 00000000000 0 222 2 00000 2 88 2 0 2 2 2 0 0 0 555 2 0 0 000000000000 0 0 555 22 0 5 0 3 3 777 3 7 00000 33 33333333333333333333 3 33 77 33 777 00 3 7 33 7 3 3 7 00000000 3 3 0 7 3 3 000 3 3333 2 0 0 5555555 2222222 88 0 88 00000 88888 0 5 2 0 00 22 6 88888 4 8 000000 8 0 4 0000 0 4 0 1111 3 777 000 7 000 2 00 444444444 88 22222222 000 0 0 0 0 2 0 0 0000 5 88 888888888888 0 0 2 0 555 5 5 55555 22 0 0 0 2222 0 7 00000 000 3333 4 777777777 6 4 4444 5555 0 0 8 55555555 222222222222222222222222222222 000 0 0 5555 555555555555555 0 1111 0 0 0 4 4 888 11 4 11111 4 4 22222222222 4 33 11 4 0 3 333333 2 4 9999 0 555555 1 22 3 6 5555555 6 6 000 00 6 6 1111 7 1111 3 3 22 1 1 444 1 555555555555555555 22 1 2 1 222222222 9999999999 2 666 6 444 6 66 6 777777777777 00000 6 6 444 3 7 3 3 3 99 3 888 99 0
consensus : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAACAAAA-CACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-A-CCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGGC--GT-ATA------TAT-GA--AAAT-GGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAA-GTG-GGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TTAA--GTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATT------ATATTCCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGGTT-CAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGGC-TTAA-AAA-GGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT--GT--TTGCTTTGTC-C--ATTTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
Reference ( family-3950 ) : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAACAAAA-CACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-A-CCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGGC--GT-ATA------TAT-GA--AAAT-GGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAA-GTG-GGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TTAA--GTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATT------ATATTCCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGGTT-CAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGGC-TTAA-AAA-GGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT--GT--TTGCTTTGTC-C--ATTTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
gi|1 : ACACGTAAGAATCATCGCAATGAGCTTTTTCTTGAAATGTTTTTGTTCTATAAC-AAACCCAA-CATATCCCCAA-----AAGAAAAGTTAAAACA-AG-TATC-GAAACTAA-AA-CT--ATAAATCCAGTT-GGTGTGTTCGTGTACCTTCATTTCATAGAT-CCGC---CCTCAAAATCCAGTGGAACTT---TTATAGTATTTA-GGGATA-TTCTCTATCTGAGGCTCATATCTTTGGGGTGGAGGGGT--GTTATA------TATTGATGAAGT-GGGATTGTT-A-GG--TACATTACAAATG--TCTCCGTTCTAAA-TTG-GG---TAT-----A---AT-TAAAGTTTTCCTCGATTACACTT-CTTCTATTTGAGCA----AG-TCTACAGCTCGACTGTACAAAAATGCAATACTTCATTAA--GTCCCTCTACAATGCTTCATTTGATTCGAACGCG-AATTCTAC-A---TGATA-AAGT-AAAATTTTGACTAT--CACTGTGGAACCCTTCAGATAAGTT------ATATTCAAGGTT--GTGAGACGT-ACCTCAGTATCAAATGTTT--AATTTTACAAGTACCTGTTTTC---GCCATTTCC--TCCATTATTTATGTTGAAGTGATT---GATATTTT---ACAC-AATCCCTTAACAAGCGATGGTT-CAA-TT-AGTAATTAAATTATGCATGTTCAGGATTATTTCCTTACGGCTG--TACGATCAGTATG-ATTTT-CGTCTATGACA--GCTGTGGC-TAAA-AAAAGGAG-ATACTACAG-TATATTA----CGTGTTACACACGCAGTAATATTCTCAGTGAAAATGG-AAAGACAA---A-TT----TGTA----GTCAA-C-ACTTATATTTCCC----------GCTG-----------------TA-T--C-G----TA---TGTG-TAAG----TTGCT-------T----GATATTGTTATTAG--TCAT-AAGAATATA-CTGGCCAA-GAA-CGC--AGAT-AGTT---GAGTGCT-ACAACTAAC--CAG-CGAACGA-AACT--AAT-CAA
gi|1 : tgcacTT--CT--TCGCTCTGTC-CCAGTTTAG-AGGTT------------CGCCCCCCCCCC-CAAAT-CAT-ACGCCTATAAACA-AT-A-G--TCGAA-AAAAG-TG----TTTCAG----TC-TAAA-A--TCCCGG-CGAA-G-AA--------------G---------ATTTA--A---A-TTC-T-A--------ATCATA---------TTT-TTTTTACTGACAT-A---AT-CGT-T-TGA----A--TATTAAT--A--ACCACA-GACTCTTTC-CTGAC-TG-AAA-TCT--T-C--TTGT---TATAAC--GCcagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccccccaaatcatacgcctataaacaatagtcgaaaaaagtgtttcagtctaaaatcccggcgaagaagatttaaattctaatcatattttttttactgacataatcgtttgaatattaataaccacagactctttcctgactgaaatcttcttgttataacgcgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|10 : tgcacacacgtaagaatcatcgcaatgagctttttcttgaaatgtttttgttctataacaaacccaacatatccccaaaagaaaagttaaaacaagtatcgaaactaaaactataaatccagttggtgtgttcgtgtaccttcatttcatagatccgccctcaaaatccagtggaacttttatagtatttagggatattctctatctgaggctcatatctttggggtggaggggtgttatatattgatgaagtgggattgttaggtacattacaaatgtctccgttctaaattgggtataattaaagttttcctcgattacacttcttctatttgagcaagtctacagctcgactgtacaaaaatgcaatacttcattaagtccctctacaatgcttcatttgattcgaacgcgaattctacatgataaagtaaaattttgactatcactgtggaacccttcagataagttatattcaaggttgtgagacgtacctcagtatcaaatgtttaattttacaagtacctgttttcgccatttcctccattatttatgttgaagtgattgatattttacacaatcccttaacaagcgatggttcaattagtaattaaattatgcatgttcaggattatttccttacggctgtacgatcagtatgattttcgtctatgacagctgtggctaaaaaaaggagatactacagtatattacgtgttacacacgcagtaatattctcagtgaaaatggaaagacaaatttgtagtcaacacttatatttcccgctgtatcgtatgtgtaagttgcttgatattgttattagtcataagaatatactggccaagaacgcagatagttgagtgctacaactaaccagcgaacgaaactaatcaacagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaaTATTCTCAGTGAAA-TG----A-ACAATTAA-TT----TGTA----GTCA--C-ACTTATATTTCCC--------CAGCTG-----------------T--TATT-G----TA---T-TG-TAAG----TTGCT-------TGTATTGTATTG-TAAT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT----GGT-CT-AC-----A---C-G-CGAGC-T-AACC--AAC-TAAA-TGGGC-----------NNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-A----TCGGGCGAA-A-AA---T-T---T----A---------ATTAA--A-TTATTTT-T-ATTT--G-AAT-ATATTTTTTTTTTTT-TTTTTACTGACAT-A---AT-CG--T-TGG--------------------------AA-TCTT----CAAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|11 : TGTGGCCTGGGGATAAT--GGGAC-GGTAA-TTGCCCGCTATTAATTGTA--GACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------CAAAACAACA-C-CCCCCCCCC-----AAAAAAA--TAAAACATAAATATCAG-AAC-AACAA-C--TATAAATCCAGTT-GGTGTAT-----------CATTTC-TAGAT-CCGCTA-CTTCAAAATTCCATG-AACTATAAT-ATA
gi|11 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAG-ATCAAA-ATTTTAAAATTTACTAGTAC---TTTTC---tagatcaaaattttaaaatttactagtacttttcc
gi|12 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtggcctggggataatgggacggtaattgcccgctattaattgtagacacagaatgcaagagctttttcttgaaatgttttcaaaacaacaccccccccccaaaaaaataaaacataaatatcagaacaacaactataaatccagttggtgtatcatttctagatccgctacttcaaaattccatgaactataatatCCCCCCCCCCCCC-CA---TCAC-ACGCCTATAAACA-ATAGCT--CTGACCAAAAG-TG----TG-CAG----TC-TAAA-AAATCCCGAGCGAC-ATAA---T-TATATACGAA---------GT--A--A-TTG-ATT-T-A-------AATCATA--------ATTTATTTTTATTTACATCA---AT-CGATC-TGA----A--T----AT--ATTACAACC-A--CCTT---CCGAC-TG-AAA-TCCA-T-ATTTT-T---TATAACCAGCAG-TAc
gi|13 : tttgattgattgattatttattgtttaacgt-ATCAAA-ATTTTAAAATTTACTAGTACT--TTTCC---GC-ATTTCC-CT-CATT--TTA--------TGATTTGGGATGTTTTTTAACCG-AATC--TAAACAA-CTATGGTT-CAATTTTAGTAATTAA-AT-TGC-ATTTCA--ATTATTTCG--------G--TGAGATCAG-ATG-ATTTTCC---TATGACAGTG--GTGGC-TTAA-AAG-GGAG-AT----CAG-TA-ATAAATTCCGTGT---ACACACAGttctaagaccaataagctctgttattatgcaacgtaaacttggcg
gi|14 : GATCTACA-CAATATTGTACAATG-TT-AG-ACTTC-T-AA--GTA--TATCCGATTAT-CGTTTGAT--AAATGCT-G---CTAC-AACTTGATA-AAGTTAAG-TTTAAAC-TT--CAC-ATGGAAACCT---GCTAAACTGCATGTATATTC-AAGTTCAGTG----GT-ATCACCG-ATCAAATGCTGTACAAT------ATAT---TTTCC---GT-ATTT
gi|15 : T--TTGCTTTCAC-A--ATTTAG-AAGGTTTGCCCCCCCC--------CCCTC-CAAAT--AT--ACCCTATAAACA-AAT-TG--TTGCA-AAA---TT----TTGCAG----TC-TGAA-TC-ACCCGTGCGAATG-AA---T-T---T---AT---------ATTCA--A-TTATTTT-T-ATTT--G-AAT-AT---------ATTT-TTTTTtttagatgtctttat
gi|17 : t-TCCCGGGCGAA-A-AA---T-T---TA--AATTCAATTATATTCA--A-TTA-TTT-T-A-TT--TCAATCATA--------CTTT-TTTTTACTGGCAT-A---AT-CG--T-TGG---------------------------A-TCTT---CC-AC-TG-AAA-TCCA-T-A--TT-T---TATAAC--G
gi|18 : gC-AT--CAC-GTGGAAACCTC-AGATAAATT------ATA-TCCAAGTTCAGTG----GT-ACAACAG-ACCAAATGTT----AATTTACCG-------TTTCC---GC-ATTT-A-CTTCGTT--TTA--------TGATTT-GG
gi|2 : TGTGACCTGGG-ATAATTCGCGACCAGTAAATTGCCCGC--TTAATTGTATGAACAC---AGAAT----ACAA-GAGCTTTT-CTTGAAATGTTT-----------C-AAACAAAAACACCCCCCCCCCCTAAAAAAAAA--TAAAAAA-AAATATCAGAAAC-AA-AAACT-TATAAATCCAGTTTGGGGTAT-----------CATTTC-TAGATTCCGC-AACTTCAAAATCCTATG-AACTACAATCATAACATTTGCGAG-TAAT-CTTT-TCTGAGGC--A-ATCTG-GGGGTGG--CGGCCCGT-ATAGATCTATAT-GA--AAATTGGGA--GTT-ATGGCGTACAT-ACAAATGCTTCTCCGTTCTAAAAGTGCGGGTATATGATACATGTATATATAGTGCTCCTCGATTACACTTTCTTCT-TTT-ACCA---GATAGATACA-CTCGAATGTACAAAA-TTCAA-ACTTT-CTAAAAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTACCA---TGATACAAGTTAAAATTTTGAC-ATTCCAC-GTGGAAAC----AGGCTAATT------ATATTTCAAGTTTAGTG----GTTACCACAGCATCAAA-GTT----AATTTACTAGTAC---TTTTCAAAGC-AGTTCCTCTCCATT--TTAT-------TGATTT-GGATGTTAT---TTTT-AATC--TTAACAA-C-ATGGTTTCAA-TTTAGTAATTAA-TT-TGC-CATTCA--ATTATTTC---------GCTTGAGATCAGCGTGCATTTT-C---TAT-ACA--GA-GTGGCCTTAATAAA-GGAGCAT----CAGGTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGGTACA-ACAATTAA-TTGTTATGTA----GTCAA-C-ACTTATATGTCCC--------CAGCTG-----------------T--T--C------TA---T-TG-TAAG----TTGCTGTAGGCTTA---TATATTG-TATT-C--TCATCAGAAAAATA-CTGG-CAA---A-CGC--AG-T-AGTT---AGGT-CT-AC-----AC--C-G-CAAGCGT-AACC--AAC-TAAA-TGGGCNN--NN--NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNCCCC--AATTTCATTACGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TCTTAAACAA-TCCC-GGCGAA-A-AA---T-T---TA--AA---------ATTTA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTTGTTTTTCCTGACAT-A---AT-CG--T-TGA----A--T----AT--A--ACAACA-AA-ACTT---CCGAC-TG-AAATTCCA-T-A--TT-T---TGAAAC--GCAG-TAGA
gi|20 : ----GTCAA-C-ACTTGTATTTCCC--------GAGCTGACAGCAAGCCTGTTATCT--T--C-C----CA---T-TG-TAAG----GTGCT-------T-----GTATTG-TATT-G--TCAT-AGAAATA-A-C
gi|21 : ----TT-CAG----TC-TAAA-AA-TCCCGGGCGTA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTA-T---TT--G-AATCAT----------TTT-TTTTT
gi|22 : ---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAttttaca
gi|3 : TGTG--CTGGGGATAAT--GGGAC-GGTAAATTGCC-GC--TTA-TTGTATG-ACAC---AGAAT----ATAA-GAG-TTTTTCTTGAAATGTTTT----------C-AAACAA---CACCCCCCCCC-----AAAA-----TAAA-CA-AAATATCAGAAAC-AA-AA-CTATATAA--TCAGTG-GGAGTAT------------ATTTC-TAGAT-CCGC----CTCAAAATCAT-TG-AACTACAAT-ATAATATTTG-GAG-TA-T-TTTT-TCTGAG-C--A----TCTGGGGTGG--GG-----T-ATA------TAT-GA--AAA--GGGA--GTTCA-GG-GTACAT-A---ATG--TCTCC-TTCTAAA-GTG-GGGTATAT-----AT-TATATAA-GTACTC-TCGAT-ACACTT-CTT----TT-AGCATGCAAGATCTACA-CTCGAATGTACAAAA-TC--A-ACTTC-TACA--GTA--TATACAATGAT-CATTTGAT--GAACGCTGAAT-CTAC-----TGATA-AAGT-AAAATTTTGAC-AT--CAC--TGGAA-CTC--AGGTAA-TT------ATATTC-AAGTTTAGTG----GT-ACCACAG-ATCAAATGTT----AATTTTCTAGTAT---TTTCC---GC-ATTTC---TCAATT--TTAT--------GATTT-GGATGTTTT---ACACGAATC---TAACAA-C-ATGGTT-CAA-TTTAGTATTAAA-TT-TG--CATT----ATTATTTG---------G--TGAGATCAG-ATG-A-TTT-C---TATGA-A--G--GTGGC--TAA-AAA-GGAG-AT----CAG-TA-ATAAATTCCGTGT---ACACACAGTAcatctaccgcgacatcagtcaagctctgttta
gi|4 : cattaattgtcatgatatatgcttgcaaatattaggattaacagtacatccttgataaaaataaattgataaaacagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-ATTAA---ATTGT---AC-TA-AATGAT-TACTCAGTGAAA-TGG-A---A-AATTAAATT----TGTA----GTCAC-C-ACTTATATTTCCCATTGATACCAGCTGAGT--------------TA-T--C-A----TACAGT-TG-TAAGATTTCTGCT-------A----TGAATTG-TATT-CCTTCATCAGAAATA-AATTGG-CAA-G-ATCGCTCAGATTAGCTCAAAGGT-CTCAC-----ACAAC-GACGAGCAG-AACCCAAACATAAAATGGGCCTATGT--TTGGCTTGTCAC--ATTTAG-CAGTTTGACCCCGCCCCCGCCCC----CC-TAGAT-CATCAAGGCTATAAACA-ATGATGATTTGAA-AAA-G-TG----TT-CAGAGTCTC-TAAA-AA-TCCCGG-------------------------------------TA--A-CTA-------------G-GGTGATA--------AATT-GTTTTAC---CAT-AAGGATGCG--TATGGAAT-A--T----AT--A--GAAACA-AG-TCTTGCACCGAC-TGAAAA-TCCA-TAA--TT-TTAGTATATC--GCAGATAGA
gi|5 : ggtttctgTTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------TTAT--CAA----TA---T-TG-TAAG----TTGCT-------T----AAT-TTG-TATT----TCCT-AGAAATA-A-CTGG-CAA-G---CGC--AGAT-AGTA---GGGT-CT-AC-----AA--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT---T--TTGC-TTGTCAC--ATTTAGAAAGTTTGGCCCCACCCCCACCCCTCCCCC-CAAATTCA-TAAGCCTA-AAACATATT-TG--TTGAA-AAAAGTTG----TT-CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AAAATT-T---TA--AA---------ATTCAATA-TTA-TTT-TAA-TT--G-AATCAT---------ATTT-TTTTTTTTACCAT-A---AT-CG--T-TGGACATA--T----AT--A--ACAACA-AT-CTTT---CCAAC-TGAAAA-TCCA-T-AT-TT-T---TATAAT--GCAG--AGAgatataatctaccgcggcatcagtcaagcttctgttttatacttgcggaacgtaaacatggcg
gi|6 : tctgaataattgtacttaatcatATATTCTCAGTGAAA-TGG-ACA-A--AT-AA-TT----TGTACATAGTCAA-CCATTTATATT-CCC--------CAGCTG-----------------T--TATC-G----TA---T-TGGTAAG----TTGCT-------T-----GTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----A---C-G-CGAGCGT-AACC--AAC-TAAA-TGGGCNN--NN--NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNCCCC-CAA--TCA-TACGCCTATAAACA-A-TATG--TTGAA-AAAAA-AT----TT-CAG----TC-T-AA-AA-TCCCGGGCGAA-A-CA---T-T---T---AA---------ATTCA--ATTTATTTT-T-A-TTTGA-AATCATA--------TTTT-TTTTTA-TGACAT-A---AT-CG--T-TGGA---A--T----ATAGA--ACAACA-AA-TCTT---CCGAC-TA-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGAtctaccgccgggcatcagttcaagctctgattttatttcaacggtaaacatggcg
gi|7 : A-ATTAA---T-TGT---AC------TAATATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----CGTA----GTCAA-C-ACTTATA-TTCCC--------CAGCTG-----------------TTAT--C-A----TA---T-TG-TAAG----TTGC--------T----TGAATTG-TATT-C--TCAT-AGAAA-A-A-CTGG-CAA-G-A-CGC--AGAT-AGT-----AGT-CT-AC-----A---C-G-CGATCGG-AACC--AAC-T-AA-TGGGCTT--GT--TTGC-TCGTCAC--ATTTAG-AAGTTTG---CCCCCCCCA------TCCC-CAA--TCA-TAAGCT--TAAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A--TA-TTT-T-ATTT--G-AATCATA--------ATTT-TTTTTAC---CAT-A---AT-CG--T-TGG----AATT----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCATT-A--TT-T-----TAAC--GCGG-TAGAtctaaccgcagcatcagtcaagctctgttta
gi|8 : ttctgATATTCTCAGTGTAC-TG-------CAAT-AA-TT----TGTA----GGCAAAC-A-TTATATA-CAT--------CAGCTG-----------------T--T--T-AAATATA---T-TG-TAAG----TTGCT-------T----CGAAATG--GTT-T--TTA----AGATA-A--TGG-TGACG-A-CGC--AGAT-AGT----AGGT-CT-AC-----AC----G-CGAGAGA-GAAC--AGC-TAAA-TGGACTT--GTAGTTGC--TGTC-T--ACT------ATTTGA----------GTTGCTCCCCC-CAA--TCA-TAAACGTATAAA-A-ATACTG--TTG-A-AAAAG-TGTTAATT-CAA----TC-TAAA-AA-TTCGGGG---A-A-AA---TAT---TA--AA-----------TC---A-TTA-TTT-A-T-TT--G-AATCATA--------ATTT-ATTATAGCCATAT-A---TT-CG--T-TTG----AG-C----AT--AT-ATAATATAA-T-TT---ACGAC-TG--AA-TCGA---A---T-T---TATAACG-GCAG-TAGttaccgcggcatcagtcaagctctgttta
gi|9 : gtttctgacttattgtactA-ATTAA---T-TGT---ACA--------TATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------TA-T--C-A----TA---T-TG-TAAG----TTGCT-------T----TA-ATTG-TATT-C--TCCT-AGAAATA-AACTGG-CAA-G---CGC--AGAT-AGT-----AGT-CT-AC-----AC----G-CGAGCGGGAACC--AAC-TAAA-TGGGCTT--TT--TTGCTT-GTA-C--ATTTAG-AAGTTTGGCCCCACCCCCACCCCTCCCCCACAAAT-CAT-AAGCCTATAAACA-AT-ATG--TTGAA-AAAAG-TG----TT-CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTTAT-A-TT--G-AATCATA--------TTTT-TTTTTAC---CAT-A---AT-CG--T-TGGAT--A--T----AT--A--ACAACA-AA-TCTT---CCAACTTG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAGAtactaccggaaatcagtcaagctat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACAACACCCCCCCCCCAAAAAAAAACACACCAAAAAACAACAACAATAAAATCAACTACAATCAACTACAATTCCTAATTTCACTATTGCTTCAAAATTCCATTTTATAATAGATA
Unaligned ( gi|19 ): TCATTAAATTGTCATGATAAATGCGTTGCAATATTATGATTAAACAGTTACTGCTTGATAAAATAAATTGATATTAAATAGAAGTTAC
Unaligned ( gi|23 ): TGATTGATTGATTGTAATATATTGTTTTACGCCCCCCCCCCCCC
Unaligned ( gi|24 ): TTTGGTTGATTGATTATTTGTTGTTTAACGTCCC
Alignments
lowQualScore : 1 11 1 11 111 111 2222 1 44444444444 1 111 22222 11 1 1 1 1 111 1 555555555555 1 1 333 1 1 1 1 111 1 33333 44444444444444444444 1 11 22 11 111 22 1 11 1 1 44444444 1 111 1 3333 1 1111111 1111111 11 1 11 11111 33333 1 1 11 11 22222 222222 1 1111 1 1 3333 111 111 111 11 333333333 22222222 111 1 2 1 1 1 1 1111 11 555555555555 1 1 1 111 22222 11 1 1 1 2222 1 22222 111 1111 111111111 11111111 666666666666666666666666666666 222222222222222 1111 111 22222 22222222222 111111 1 1111 2222222 111 222222222222222222 111111111 1111111111 333333333333 111
lowQualScore : 2 6 88 3 7 6 88 7 777 777 1111 0 2 3 77777777777 0 666 3 55555 3 33 3 0 3 3 3 0 0 0 666 3 0 1 000000000000 0 0 555 88 0 6 9 3 3 777 3 6 00000 88 99999999999999999999 3 88 00 88 777 00 3 6 88 6 3 3 6 55555555 7 7 1 6 7 3 999 3 5555 3 0 1 8888888 6666666 33 0 33 55555 00000 0 5 3 8 11 11 5 11111 1 3 333333 0 5 6 7777 8 1 2 3333 0 555 000 6 888 3 11 777777777 88 00000000 777 0 0 0 0 3 0 0 7777 2 33 333333333333 9 0 3 0 777 2 2 77777 33 0 0 0 1111 0 5 66666 000 2222 4 999999999 4 4 9999 8888 4 4 0 44444444 222222222222222222222222222222 777 4 4 8888 666666666666666 4 1111 8 8 8 4 4 000 66 4 33333 4 4 33333333333 4 66 66 4 5 0 333333 0 0 4444 4 888888 2 33 5 3 7777777 0 3 777 55 3 3 7777 6 7777 3 3 44 3 3 555 3 666666666666666666 44 3 9 3 222222222 7777777777 6 999 3 666 3 88 3 555555555555 99999 3 3 000 3 6 3 3 3 77 3 555 77 4
lowQualScore : . . .. . . . .. . ... ... .... . . . ........... . ... . ..... . .. . . . . . . . . ... . . . ............ . . ... .. . . . . . ... . . ..... .. .................... . .. .. .. ... .. . . .. . . . . ........ . . . . . . ... . .... . . . ....... ....... .. . .. ..... ..... . . . . .. .. . ..... . . ...... . . . .... . . . .... . ... ... . ... . .. ......... .. ........ ... . . . . . . . .... . .. ............ . . . . ... . . ..... .. . . . .... . . ..... ... .... . ......... . . .... .... . . . ........ .............................. ... . . .... ............... . .... . . . . . ... .. . ..... . . ........... . .. .. . . . ...... . . .... . ...... . .. . . ....... . . ... .. . . .... . .... . . .. . . ... . .................. .. . . . ......... .......... . ... . ... . .. . ............ ..... . . ... . . . . . .. . ... .. .
lowQualScore : 0 7 33 3 3 7 33 3 777 555 2222 0 5 2 00000000000 0 222 2 00000 2 88 2 0 2 2 2 0 0 0 555 2 0 0 000000000000 0 0 555 22 0 5 0 3 3 777 3 7 00000 33 33333333333333333333 3 33 77 33 777 00 3 7 33 7 3 3 7 00000000 3 3 0 7 3 3 000 3 3333 2 0 0 5555555 2222222 88 0 88 00000 88888 0 5 2 0 00 22 6 88888 4 8 000000 8 0 4 0000 0 4 0 1111 3 777 000 7 000 2 00 444444444 88 22222222 000 0 0 0 0 2 0 0 0000 5 88 888888888888 0 0 2 0 555 5 5 55555 22 0 0 0 2222 0 7 00000 000 3333 4 777777777 6 4 4444 5555 0 0 8 55555555 222222222222222222222222222222 000 0 0 5555 555555555555555 0 1111 0 0 0 4 4 888 11 4 11111 4 4 22222222222 4 33 11 4 0 3 333333 2 4 9999 0 555555 1 22 3 6 5555555 6 6 000 00 6 6 1111 7 1111 3 3 22 1 1 444 1 555555555555555555 22 1 2 1 222222222 9999999999 2 666 6 444 6 66 6 777777777777 00000 6 6 444 3 7 3 3 3 99 3 888 99 0
consensus : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAACAAAA-CACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-A-CCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGGC--GT-ATA------TAT-GA--AAAT-GGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAA-GTG-GGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TTAA--GTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATT------ATATTCCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGGTT-CAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGGC-TTAA-AAA-GGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT--GT--TTGCTTTGTC-C--ATTTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
Reference ( family-3950 ) : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAACAAAA-CACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-A-CCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGGC--GT-ATA------TAT-GA--AAAT-GGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAA-GTG-GGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TTAA--GTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATT------ATATTCCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGGTT-CAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGGC-TTAA-AAA-GGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT--GT--TTGCTTTGTC-C--ATTTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
gi|1 : ACACGTAAGAATCATCGCAATGAGCTTTTTCTTGAAATGTTTTTGTTCTATAAC-AAACCCAA-CATATCCCCAA-----AAGAAAAGTTAAAACA-AG-TATC-GAAACTAA-AA-CT--ATAAATCCAGTT-GGTGTGTTCGTGTACCTTCATTTCATAGAT-CCGC---CCTCAAAATCCAGTGGAACTT---TTATAGTATTTA-GGGATA-TTCTCTATCTGAGGCTCATATCTTTGGGGTGGAGGGGT--GTTATA------TATTGATGAAGT-GGGATTGTT-A-GG--TACATTACAAATG--TCTCCGTTCTAAA-TTG-GG---TAT-----A---AT-TAAAGTTTTCCTCGATTACACTT-CTTCTATTTGAGCA----AG-TCTACAGCTCGACTGTACAAAAATGCAATACTTCATTAA--GTCCCTCTACAATGCTTCATTTGATTCGAACGCG-AATTCTAC-A---TGATA-AAGT-AAAATTTTGACTAT--CACTGTGGAACCCTTCAGATAAGTT------ATATTCAAGGTT--GTGAGACGT-ACCTCAGTATCAAATGTTT--AATTTTACAAGTACCTGTTTTC---GCCATTTCC--TCCATTATTTATGTTGAAGTGATT---GATATTTT---ACAC-AATCCCTTAACAAGCGATGGTT-CAA-TT-AGTAATTAAATTATGCATGTTCAGGATTATTTCCTTACGGCTG--TACGATCAGTATG-ATTTT-CGTCTATGACA--GCTGTGGC-TAAA-AAAAGGAG-ATACTACAG-TATATTA----CGTGTTACACACGCAGTAATATTCTCAGTGAAAATGG-AAAGACAA---A-TT----TGTA----GTCAA-C-ACTTATATTTCCC----------GCTG-----------------TA-T--C-G----TA---TGTG-TAAG----TTGCT-------T----GATATTGTTATTAG--TCAT-AAGAATATA-CTGGCCAA-GAA-CGC--AGAT-AGTT---GAGTGCT-ACAACTAAC--CAG-CGAACGA-AACT--AAT-CAA
gi|1 : tgcacTT--CT--TCGCTCTGTC-CCAGTTTAG-AGGTT------------CGCCCCCCCCCC-CAAAT-CAT-ACGCCTATAAACA-AT-A-G--TCGAA-AAAAG-TG----TTTCAG----TC-TAAA-A--TCCCGG-CGAA-G-AA--------------G---------ATTTA--A---A-TTC-T-A--------ATCATA---------TTT-TTTTTACTGACAT-A---AT-CGT-T-TGA----A--TATTAAT--A--ACCACA-GACTCTTTC-CTGAC-TG-AAA-TCT--T-C--TTGT---TATAAC--GCcagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccccccaaatcatacgcctataaacaatagtcgaaaaaagtgtttcagtctaaaatcccggcgaagaagatttaaattctaatcatattttttttactgacataatcgtttgaatattaataaccacagactctttcctgactgaaatcttcttgttataacgcgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|10 : tgcacacacgtaagaatcatcgcaatgagctttttcttgaaatgtttttgttctataacaaacccaacatatccccaaaagaaaagttaaaacaagtatcgaaactaaaactataaatccagttggtgtgttcgtgtaccttcatttcatagatccgccctcaaaatccagtggaacttttatagtatttagggatattctctatctgaggctcatatctttggggtggaggggtgttatatattgatgaagtgggattgttaggtacattacaaatgtctccgttctaaattgggtataattaaagttttcctcgattacacttcttctatttgagcaagtctacagctcgactgtacaaaaatgcaatacttcattaagtccctctacaatgcttcatttgattcgaacgcgaattctacatgataaagtaaaattttgactatcactgtggaacccttcagataagttatattcaaggttgtgagacgtacctcagtatcaaatgtttaattttacaagtacctgttttcgccatttcctccattatttatgttgaagtgattgatattttacacaatcccttaacaagcgatggttcaattagtaattaaattatgcatgttcaggattatttccttacggctgtacgatcagtatgattttcgtctatgacagctgtggctaaaaaaaggagatactacagtatattacgtgttacacacgcagtaatattctcagtgaaaatggaaagacaaatttgtagtcaacacttatatttcccgctgtatcgtatgtgtaagttgcttgatattgttattagtcataagaatatactggccaagaacgcagatagttgagtgctacaactaaccagcgaacgaaactaatcaacagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaaTATTCTCAGTGAAA-TG----A-ACAATTAA-TT----TGTA----GTCA--C-ACTTATATTTCCC--------CAGCTG-----------------T--TATT-G----TA---T-TG-TAAG----TTGCT-------TGTATTGTATTG-TAAT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT----GGT-CT-AC-----A---C-G-CGAGC-T-AACC--AAC-TAAA-TGGGC-----------NNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-A----TCGGGCGAA-A-AA---T-T---T----A---------ATTAA--A-TTATTTT-T-ATTT--G-AAT-ATATTTTTTTTTTTT-TTTTTACTGACAT-A---AT-CG--T-TGG--------------------------AA-TCTT----CAAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|11 : TGTGGCCTGGGGATAAT--GGGAC-GGTAA-TTGCCCGCTATTAATTGTA--GACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------CAAAACAACA-C-CCCCCCCCC-----AAAAAAA--TAAAACATAAATATCAG-AAC-AACAA-C--TATAAATCCAGTT-GGTGTAT-----------CATTTC-TAGAT-CCGCTA-CTTCAAAATTCCATG-AACTATAAT-ATA
gi|11 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAG-ATCAAA-ATTTTAAAATTTACTAGTAC---TTTTC---tagatcaaaattttaaaatttactagtacttttcc
gi|12 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtggcctggggataatgggacggtaattgcccgctattaattgtagacacagaatgcaagagctttttcttgaaatgttttcaaaacaacaccccccccccaaaaaaataaaacataaatatcagaacaacaactataaatccagttggtgtatcatttctagatccgctacttcaaaattccatgaactataatatCCCCCCCCCCCCC-CA---TCAC-ACGCCTATAAACA-ATAGCT--CTGACCAAAAG-TG----TG-CAG----TC-TAAA-AAATCCCGAGCGAC-ATAA---T-TATATACGAA---------GT--A--A-TTG-ATT-T-A-------AATCATA--------ATTTATTTTTATTTACATCA---AT-CGATC-TGA----A--T----AT--ATTACAACC-A--CCTT---CCGAC-TG-AAA-TCCA-T-ATTTT-T---TATAACCAGCAG-TAc
gi|13 : tttgattgattgattatttattgtttaacgt-ATCAAA-ATTTTAAAATTTACTAGTACT--TTTCC---GC-ATTTCC-CT-CATT--TTA--------TGATTTGGGATGTTTTTTAACCG-AATC--TAAACAA-CTATGGTT-CAATTTTAGTAATTAA-AT-TGC-ATTTCA--ATTATTTCG--------G--TGAGATCAG-ATG-ATTTTCC---TATGACAGTG--GTGGC-TTAA-AAG-GGAG-AT----CAG-TA-ATAAATTCCGTGT---ACACACAGttctaagaccaataagctctgttattatgcaacgtaaacttggcg
gi|14 : GATCTACA-CAATATTGTACAATG-TT-AG-ACTTC-T-AA--GTA--TATCCGATTAT-CGTTTGAT--AAATGCT-G---CTAC-AACTTGATA-AAGTTAAG-TTTAAAC-TT--CAC-ATGGAAACCT---GCTAAACTGCATGTATATTC-AAGTTCAGTG----GT-ATCACCG-ATCAAATGCTGTACAAT------ATAT---TTTCC---GT-ATTT
gi|15 : T--TTGCTTTCAC-A--ATTTAG-AAGGTTTGCCCCCCCC--------CCCTC-CAAAT--AT--ACCCTATAAACA-AAT-TG--TTGCA-AAA---TT----TTGCAG----TC-TGAA-TC-ACCCGTGCGAATG-AA---T-T---T---AT---------ATTCA--A-TTATTTT-T-ATTT--G-AAT-AT---------ATTT-TTTTTtttagatgtctttat
gi|17 : t-TCCCGGGCGAA-A-AA---T-T---TA--AATTCAATTATATTCA--A-TTA-TTT-T-A-TT--TCAATCATA--------CTTT-TTTTTACTGGCAT-A---AT-CG--T-TGG---------------------------A-TCTT---CC-AC-TG-AAA-TCCA-T-A--TT-T---TATAAC--G
gi|18 : gC-AT--CAC-GTGGAAACCTC-AGATAAATT------ATA-TCCAAGTTCAGTG----GT-ACAACAG-ACCAAATGTT----AATTTACCG-------TTTCC---GC-ATTT-A-CTTCGTT--TTA--------TGATTT-GG
gi|2 : TGTGACCTGGG-ATAATTCGCGACCAGTAAATTGCCCGC--TTAATTGTATGAACAC---AGAAT----ACAA-GAGCTTTT-CTTGAAATGTTT-----------C-AAACAAAAACACCCCCCCCCCCTAAAAAAAAA--TAAAAAA-AAATATCAGAAAC-AA-AAACT-TATAAATCCAGTTTGGGGTAT-----------CATTTC-TAGATTCCGC-AACTTCAAAATCCTATG-AACTACAATCATAACATTTGCGAG-TAAT-CTTT-TCTGAGGC--A-ATCTG-GGGGTGG--CGGCCCGT-ATAGATCTATAT-GA--AAATTGGGA--GTT-ATGGCGTACAT-ACAAATGCTTCTCCGTTCTAAAAGTGCGGGTATATGATACATGTATATATAGTGCTCCTCGATTACACTTTCTTCT-TTT-ACCA---GATAGATACA-CTCGAATGTACAAAA-TTCAA-ACTTT-CTAAAAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTACCA---TGATACAAGTTAAAATTTTGAC-ATTCCAC-GTGGAAAC----AGGCTAATT------ATATTTCAAGTTTAGTG----GTTACCACAGCATCAAA-GTT----AATTTACTAGTAC---TTTTCAAAGC-AGTTCCTCTCCATT--TTAT-------TGATTT-GGATGTTAT---TTTT-AATC--TTAACAA-C-ATGGTTTCAA-TTTAGTAATTAA-TT-TGC-CATTCA--ATTATTTC---------GCTTGAGATCAGCGTGCATTTT-C---TAT-ACA--GA-GTGGCCTTAATAAA-GGAGCAT----CAGGTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGGTACA-ACAATTAA-TTGTTATGTA----GTCAA-C-ACTTATATGTCCC--------CAGCTG-----------------T--T--C------TA---T-TG-TAAG----TTGCTGTAGGCTTA---TATATTG-TATT-C--TCATCAGAAAAATA-CTGG-CAA---A-CGC--AG-T-AGTT---AGGT-CT-AC-----AC--C-G-CAAGCGT-AACC--AAC-TAAA-TGGGCNN--NN--NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNCCCC--AATTTCATTACGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TCTTAAACAA-TCCC-GGCGAA-A-AA---T-T---TA--AA---------ATTTA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTTGTTTTTCCTGACAT-A---AT-CG--T-TGA----A--T----AT--A--ACAACA-AA-ACTT---CCGAC-TG-AAATTCCA-T-A--TT-T---TGAAAC--GCAG-TAGA
gi|20 : ----GTCAA-C-ACTTGTATTTCCC--------GAGCTGACAGCAAGCCTGTTATCT--T--C-C----CA---T-TG-TAAG----GTGCT-------T-----GTATTG-TATT-G--TCAT-AGAAATA-A-C
gi|21 : ----TT-CAG----TC-TAAA-AA-TCCCGGGCGTA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTA-T---TT--G-AATCAT----------TTT-TTTTT
gi|22 : ---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAttttaca
gi|3 : TGTG--CTGGGGATAAT--GGGAC-GGTAAATTGCC-GC--TTA-TTGTATG-ACAC---AGAAT----ATAA-GAG-TTTTTCTTGAAATGTTTT----------C-AAACAA---CACCCCCCCCC-----AAAA-----TAAA-CA-AAATATCAGAAAC-AA-AA-CTATATAA--TCAGTG-GGAGTAT------------ATTTC-TAGAT-CCGC----CTCAAAATCAT-TG-AACTACAAT-ATAATATTTG-GAG-TA-T-TTTT-TCTGAG-C--A----TCTGGGGTGG--GG-----T-ATA------TAT-GA--AAA--GGGA--GTTCA-GG-GTACAT-A---ATG--TCTCC-TTCTAAA-GTG-GGGTATAT-----AT-TATATAA-GTACTC-TCGAT-ACACTT-CTT----TT-AGCATGCAAGATCTACA-CTCGAATGTACAAAA-TC--A-ACTTC-TACA--GTA--TATACAATGAT-CATTTGAT--GAACGCTGAAT-CTAC-----TGATA-AAGT-AAAATTTTGAC-AT--CAC--TGGAA-CTC--AGGTAA-TT------ATATTC-AAGTTTAGTG----GT-ACCACAG-ATCAAATGTT----AATTTTCTAGTAT---TTTCC---GC-ATTTC---TCAATT--TTAT--------GATTT-GGATGTTTT---ACACGAATC---TAACAA-C-ATGGTT-CAA-TTTAGTATTAAA-TT-TG--CATT----ATTATTTG---------G--TGAGATCAG-ATG-A-TTT-C---TATGA-A--G--GTGGC--TAA-AAA-GGAG-AT----CAG-TA-ATAAATTCCGTGT---ACACACAGTAcatctaccgcgacatcagtcaagctctgttta
gi|4 : cattaattgtcatgatatatgcttgcaaatattaggattaacagtacatccttgataaaaataaattgataaaacagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-ATTAA---ATTGT---AC-TA-AATGAT-TACTCAGTGAAA-TGG-A---A-AATTAAATT----TGTA----GTCAC-C-ACTTATATTTCCCATTGATACCAGCTGAGT--------------TA-T--C-A----TACAGT-TG-TAAGATTTCTGCT-------A----TGAATTG-TATT-CCTTCATCAGAAATA-AATTGG-CAA-G-ATCGCTCAGATTAGCTCAAAGGT-CTCAC-----ACAAC-GACGAGCAG-AACCCAAACATAAAATGGGCCTATGT--TTGGCTTGTCAC--ATTTAG-CAGTTTGACCCCGCCCCCGCCCC----CC-TAGAT-CATCAAGGCTATAAACA-ATGATGATTTGAA-AAA-G-TG----TT-CAGAGTCTC-TAAA-AA-TCCCGG-------------------------------------TA--A-CTA-------------G-GGTGATA--------AATT-GTTTTAC---CAT-AAGGATGCG--TATGGAAT-A--T----AT--A--GAAACA-AG-TCTTGCACCGAC-TGAAAA-TCCA-TAA--TT-TTAGTATATC--GCAGATAGA
gi|5 : ggtttctgTTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------TTAT--CAA----TA---T-TG-TAAG----TTGCT-------T----AAT-TTG-TATT----TCCT-AGAAATA-A-CTGG-CAA-G---CGC--AGAT-AGTA---GGGT-CT-AC-----AA--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT---T--TTGC-TTGTCAC--ATTTAGAAAGTTTGGCCCCACCCCCACCCCTCCCCC-CAAATTCA-TAAGCCTA-AAACATATT-TG--TTGAA-AAAAGTTG----TT-CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AAAATT-T---TA--AA---------ATTCAATA-TTA-TTT-TAA-TT--G-AATCAT---------ATTT-TTTTTTTTACCAT-A---AT-CG--T-TGGACATA--T----AT--A--ACAACA-AT-CTTT---CCAAC-TGAAAA-TCCA-T-AT-TT-T---TATAAT--GCAG--AGAgatataatctaccgcggcatcagtcaagcttctgttttatacttgcggaacgtaaacatggcg
gi|6 : tctgaataattgtacttaatcatATATTCTCAGTGAAA-TGG-ACA-A--AT-AA-TT----TGTACATAGTCAA-CCATTTATATT-CCC--------CAGCTG-----------------T--TATC-G----TA---T-TGGTAAG----TTGCT-------T-----GTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----A---C-G-CGAGCGT-AACC--AAC-TAAA-TGGGCNN--NN--NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNCCCC-CAA--TCA-TACGCCTATAAACA-A-TATG--TTGAA-AAAAA-AT----TT-CAG----TC-T-AA-AA-TCCCGGGCGAA-A-CA---T-T---T---AA---------ATTCA--ATTTATTTT-T-A-TTTGA-AATCATA--------TTTT-TTTTTA-TGACAT-A---AT-CG--T-TGGA---A--T----ATAGA--ACAACA-AA-TCTT---CCGAC-TA-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGAtctaccgccgggcatcagttcaagctctgattttatttcaacggtaaacatggcg
gi|7 : A-ATTAA---T-TGT---AC------TAATATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----CGTA----GTCAA-C-ACTTATA-TTCCC--------CAGCTG-----------------TTAT--C-A----TA---T-TG-TAAG----TTGC--------T----TGAATTG-TATT-C--TCAT-AGAAA-A-A-CTGG-CAA-G-A-CGC--AGAT-AGT-----AGT-CT-AC-----A---C-G-CGATCGG-AACC--AAC-T-AA-TGGGCTT--GT--TTGC-TCGTCAC--ATTTAG-AAGTTTG---CCCCCCCCA------TCCC-CAA--TCA-TAAGCT--TAAACA-A-TATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A--TA-TTT-T-ATTT--G-AATCATA--------ATTT-TTTTTAC---CAT-A---AT-CG--T-TGG----AATT----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCATT-A--TT-T-----TAAC--GCGG-TAGAtctaaccgcagcatcagtcaagctctgttta
gi|8 : ttctgATATTCTCAGTGTAC-TG-------CAAT-AA-TT----TGTA----GGCAAAC-A-TTATATA-CAT--------CAGCTG-----------------T--T--T-AAATATA---T-TG-TAAG----TTGCT-------T----CGAAATG--GTT-T--TTA----AGATA-A--TGG-TGACG-A-CGC--AGAT-AGT----AGGT-CT-AC-----AC----G-CGAGAGA-GAAC--AGC-TAAA-TGGACTT--GTAGTTGC--TGTC-T--ACT------ATTTGA----------GTTGCTCCCCC-CAA--TCA-TAAACGTATAAA-A-ATACTG--TTG-A-AAAAG-TGTTAATT-CAA----TC-TAAA-AA-TTCGGGG---A-A-AA---TAT---TA--AA-----------TC---A-TTA-TTT-A-T-TT--G-AATCATA--------ATTT-ATTATAGCCATAT-A---TT-CG--T-TTG----AG-C----AT--AT-ATAATATAA-T-TT---ACGAC-TG--AA-TCGA---A---T-T---TATAACG-GCAG-TAGttaccgcggcatcagtcaagctctgttta
gi|9 : gtttctgacttattgtactA-ATTAA---T-TGT---ACA--------TATTCTCAGTGAAA-TGG-ACA-A--ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------TA-T--C-A----TA---T-TG-TAAG----TTGCT-------T----TA-ATTG-TATT-C--TCCT-AGAAATA-AACTGG-CAA-G---CGC--AGAT-AGT-----AGT-CT-AC-----AC----G-CGAGCGGGAACC--AAC-TAAA-TGGGCTT--TT--TTGCTT-GTA-C--ATTTAG-AAGTTTGGCCCCACCCCCACCCCTCCCCCACAAAT-CAT-AAGCCTATAAACA-AT-ATG--TTGAA-AAAAG-TG----TT-CAA----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---T---AA---------ATTCA--A-TTA-TTTAT-A-TT--G-AATCATA--------TTTT-TTTTTAC---CAT-A---AT-CG--T-TGGAT--A--T----AT--A--ACAACA-AA-TCTT---CCAACTTG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAGAtactaccggaaatcagtcaagctat
blockSeqs : A G TC C A C . A TGA . . . C T T A AAA A CCTAA A . A T A A A . C A TAT A T T C . T TA CA . T C C . AT . G AA CT CGGCCCGTATAGATCTA . . TT . AT CG . C CT G A C G GATACATG A A G C T T CT . TGCA A . T TTCAA CTAAAA . . . GAAT AACT C T A . TC A A CTCA C A GCATGT C C . T C T TTAA T AAA . CTC T . TT TG TTAACCG T . T T T T . . CAT C . GCT C C T C . G C GTG CT T . C . G . TTCCG . ACAC . GTACAACA T A GTTA CATA A C ATTGATAC ACAGCAAGCCTGTTATCTTCC CAG . G ATTT GTAGGCTTATAT . CCT C T A . C AT TC T TCAAA . C ACAAC A GG CA A A ATGT N AC A NNNNNN N NN N A NNNNNNN T TAG AT C T TTAA G AGTC T C AA T T AAT A TAAATTCAATTAT AT T T A ATTTGA ATTTTTTTTT A TGA C AGG G AT A ACATAT ATT T . GCA T A T T A TT . TAG CA A
blockSeqs : . . . . A . . . TG . . . C T T . CA A . A . A . A A A . . . TT A . G C . . AA TA . C . . . T . . A G GGTATA . . . . CA G . . . . . . G AT A . A . . . . . G A . A TTAG TACA . . . AAT CA . T A . . G A TCA A A . C C . . . T TTAA . . . CC C . T T ACACG T . . . . T . . CCA C . GG . . T . . G C GA T . . . . . . TTCCG . ACAC . GACAA T . . . . . . AGTTATCA . . . . TGTATTGT . C C . A . . A . . TA . . ACC . T . . . GTAG T AC . GCCCCC C CC C . TTTCATT . TTA . . . . . . . . C . . . . ATATACGAA . . T . ATTTG AA G TTA . . . . . AATAT AGA . . . . A . . . T . . G .
blockSeqs : . . . . . . . . . . . . . . A A . . . . T . . A . . . . T . C . A . A TCA TAA . . . G . . . . . . G A CT G A . . T . . . T GTAC . . . AC C . T T TTTT . . . . . T . . CA . . G . . . . . . . G . . . . . . . CG . ACAC . GACAA T . . . . . . TTTAAATA . . . . ATGA . C . . . . . A . . AG . . AAC . T . . . NN N AC . NNNNNN N NN N . ATCATC . TGA . . . . . . . . A . . . . TAAA . . T . ATTTG AC . TGG . . . . . AATT AT . . . . . . . . . . . . .
blockSeqs : . . . . A G . . . T . . . . . . . . . . . T T . AT . TA . GACAA T . . . . . . TTATCAA . . . . TAAT . G . . . . . A . . TA . . AC . G . . . NN C N . ACCCCG C GC T . ATTCAT . TAC . . . . . . . . A . . . . TAAA . . . . ATTTC AA . TGA . . . . . ATAT A . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . A . GACAA T . . . . . . TTATTG . . . . TTGA . C . . . . . A . . T . . AC . G . . . GT N A . GCCCCA C AC N . ATCAT . TA . . . . . . . . A . . . . TAAA . . . . AATTG AA . TAC . . . . . AAT A . . . . . . . . . . . . .
blockSeqs : . . . . . . T . . . AACA T . . . . . . TTATCG . . . . TCGA . C . . . . . A . . A . . AC . T . . . TT T N . NNNNNN N NN T . TCAC . AT . . . . . . . . A . . . . TAT . . . . ATTTG AT . TGA . . . . . AGC A . . . . . . . . . . . . .
blockSeqs : . GAAA . . . . . . . TTATCA . . . . TGT . T . . . . . . . . . . . AC . G . . . T . N . GCCCCA C GT T . ATAT . TT . . . . . . . . A . . . . TAA . . . . ATTG AA . CCA . . . . . AT A . . . . . . . . . . . . .
blockSeqs : . CA . . . . . . . TATCA . . . . TGT . C . . . . . . . . . . . AC . A . . . . T . CCC C AC . . TCAT . TA . . . . . . . . A . . . . TAA . . . . TTTG AA . . . . . . . AT A . . . . . . . . . . . . .
blockSeqs : . . . . TTC . . . . TTA . . . . . . C . A . A . . TCAT . TA . . . . . . . . A . . . . TAA . . . . ATTG AT . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . TCAT . TA . . . . . . . . A . . . . TAA . . . . TTG A . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . TA . . . . A A . . . . . . . . . . .
blockSeqs : . . . . . . . . . G . .
blockSeqCons : G* TA*** **** TA** *** C** ** T******** T* *** GACAA**** TTATCG************************ C*** A** AC********* N*** GCCCCG TCAT*** A* TAA*************** ATTTG**** AA******** ** AAT********* ***
originalCons : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAACAAAA-CACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-A-CCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGGC--GT-ATA------TAT-GA--AAAT-GGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAA-GTG-GGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TTAA--GTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATT------ATATTCCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTTAAAATTTACTAGTAC---TTTCC---GC-ATTTCC-CTCCATT--TTAT-------TGATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGGTT-CAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGGC-TTAA-AAA-GGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA-ACAATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTG-----------------T--T--C-G----TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATT-C--TCAT-AGAAATA-A-CTGG-CAA-G-A-CGC--AGAT-AGTT---AGGT-CT-AC-----AC--C-G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT--GT--TTGCTTTGTC-C--ATTTAG-AAGTTTGGCCCCNCCCCCGCCCCTCCCCC-CAAATTCATTAAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-T---TA--AA---------ATTCA--A-TTA-TTT-T-A-TT--G-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG--T-TGG----A--T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
finalCons : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAACAAAA-CACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AA-CT-TATAAATCCAGTT-GGNGTAT-----------CATTTC-TAGAT-CCGC-A-CCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-TA-T-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGGC--GT-ATA------TAT-GA--AAAT-GGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCTAAA-GTG-GGGTATAT-----AT-TATATAAAGTNCTCCTCGATTACACTT-CTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TTAA--GTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTAC-A---TGATA-AAGTTAAAATTTTGAC-AT--CACG-TGGAAACTA---GGTAAATT------ATATTCCAAGTTCAGTG----GT-ACCACAG-ATCAAATGTTTA--AATTTACTAGTAC---TTTCC---GC-ATTTCC--TCCATT--TTAT--------GATTT-GGATGTTTT---ACNC-AATC--TTAACAA-C-ATGGTT-CAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGGC-TTAA-AAA-GGAG-AT----CAG-TA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGGACAA----ATTAA-TT----TGTA----GTCAA-C-ACTTATATTTCCC--------CAGCTGTTATCG------------------------TA---T-TG-TAAG----TTGCT-------T----TGTATTG-TATTC---TCAT-AGAAATA-A-CTGG-CAA-GA--CGC--AGAT-AGTT---AGGT-CT-ACAC---------G-CGAGCGG-AACC--AAC-TAAA-TGGGCTT--GT--TTGCTTTGTCN---ATTTAG-AAGTTTGGCCCCGCCCCCGCCCCTCCCCC-CAATCAT---AAGCCTATAAACA-ATTATG--TTGAA-AAAAG-TG----TT-CAG----TC-TAAA-AA-TCCCGGGCGAA-A-AA---T-TTAA---------------ATTCA--A-TTA-TTT-TATTTG----AATCATAA--------TTT-TTTTTACTGACAT-A---AT-CG--T-TGGAAT---------AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACAACACCCCCCCCCCAAAAAAAAACACACCAAAAAACAACAACAATAAAATCAACTACAATCAACTACAATTCCTAATTTCACTATTGCTTCAAAATTCCATTTTATAATAGATA
Unaligned ( gi|19 ): TCATTAAATTGTCATGATAAATGCGTTGCAATATTATGATTAAACAGTTACTGCTTGATAAAATAAATTGATATTAAATAGAAGTTAC
Unaligned ( gi|23 ): TGATTGATTGATTGTAATATATTGTTTTACGCCCCCCCCCCCCC
Unaligned ( gi|24 ): TTTGGTTGATTGATTATTTGTTGTTTAACGTCCC
Alignments
lowQualScore : 1 11 1 11 111 111 2222 1 4444444444 1 1111 22222 11 1 2 1 111 1 555555555555 1 1 33 1 1 1 111 1 1 33333 666666666666666666 1 11 22 11 111 22 1 11 1 1 44444444 1 111 1 3333 1 1111111 22222 11 1 11 11111 1 2222 1 1 11 11 3333 222222 1 1111 1 2222 1 111 111 11 11 22222222 22222222 111 1 2 1 1 1 1 1111 11 555555555555 1 1 1 111 22222 1 1 1 1 2222 1 22222 111 1111 1111111111111111 11111 2222222222 1111 111 22222 222222 11111111 1111 222222222222 11 111 1111 1111111111111 11 1111111111 1111111111 111
lowQualScore : 2 6 88 3 7 6 88 7 777 777 1111 0 55 3 3333333333 0 3333 3 55555 3 33 3 0 3 3 3 0 0 666 3 0 1 000000000000 0 0 55 88 0 6 9 3 777 3 3 6 00000 88 777777777777777777 3 88 00 88 777 00 3 6 88 6 3 3 6 55555555 7 7 1 6 7 3 999 3 5555 3 0 1 8888888 88888 33 0 33 55555 0 0000 0 5 3 8 11 11 0 7777 1 3 333333 0 5 6 7777 8 1 5 4444 1 0 000 5 000 6 11 11 8 0 8 99999999 00000000 777 0 0 0 0 3 0 0 7777 2 33 333333333333 9 0 3 0 777 2 2 77777 0 3 0 0 0 1111 0 5 66666 000 2222 4 4 66 1 4 9999 8888 4 4 5 9999999999999999 00000 55 7777 99 777 777 4 4 8888 4 8888888888 4 1111 8 4 8 4 4 4 000 66 4 33333 4 4 8 4 222222 66 66 4 4 33333333 888 8888 4 333333333333 3 3 33 3 3 44 0 3 777 55 3 3 3333 7777 3 3 3 1 44 3 44 3 77 7777777777777 3 55 0 33 3 7777777777 6 999 3 666 3 3 3 1 9999999999 99999 3 3 000 3 6 3 3 3 77 3 555 77 4
lowQualScore : . . .. . . . .. . ... ... .... . .. . .......... . .... . ..... . .. . . . . . . . ... . . . ............ . . .. .. . . . . ... . . . ..... .. .................. . .. .. .. ... .. . . .. . . . . ........ . . . . . . ... . .... . . . ....... ..... .. . .. ..... . .... . . . . .. .. . .... . . ...... . . . .... . . . .... . . ... . ... . .. .. . . . ........ ........ ... . . . . . . . .... . .. ............ . . . . ... . . ..... . . . . . .... . . ..... ... .... . . .. . . .... .... . . . ................ ..... .. .... .. ... ... . . .... . .......... . .... . . . . . . ... .. . ..... . . . . ...... .. .. . . ........ ... .... . ............ . . .. . . .. . . ... .. . . .... .... . . . . .. . .. . .. ............. . .. . .. . .......... . ... . ... . . . . .......... ..... . . ... . . . . . .. . ... .. .
lowQualScore : 0 7 33 3 3 7 33 3 777 555 2222 0 88 2 8888888888 0 2222 2 00000 2 88 2 0 2 2 2 0 0 555 2 0 0 000000000000 0 0 55 22 0 5 0 3 777 3 3 7 00000 33 333333333333333333 3 33 77 33 777 00 3 7 33 7 3 3 7 00000000 3 3 0 7 3 3 000 3 3333 2 0 0 5555555 22222 88 0 88 00000 0 8888 0 5 2 0 00 22 6 8888 4 8 000000 8 0 4 0000 0 4 4 7777 4 3 000 7 000 7 00 00 0 8 0 00000000 22222222 000 0 0 0 0 2 0 0 0000 5 88 888888888888 0 0 2 0 555 5 5 55555 0 2 0 0 0 2222 0 7 00000 000 3333 4 4 11 9 4 4444 5555 0 0 7 1111111111111111 00000 55 8888 55 000 000 0 0 5555 0 9999999999 0 1111 0 0 0 0 4 4 888 11 4 11111 4 4 9 4 222222 33 11 4 4 99999999 555 5555 0 888888888888 6 6 66 6 6 33 8 6 000 00 6 6 8888 1111 3 3 3 2 22 1 22 1 33 4444444444444 1 44 3 55 1 9999999999 2 666 6 444 6 6 6 4 8888888888 00000 6 6 444 3 7 3 3 3 99 3 888 99 0
consensus : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAAC-AAAACACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AACT-TATAAATCCAG-TTGGNGTAT-----------CATTTC-TAGA-TCCGC-ACCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-T-AT-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGG--CGT-A------TATAT-GA--AAA-TGGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCT-AAAGTG-GGGTATAT-AT-----TATATAAAGTNCTCCTCGATTACAC-TTCTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TT--AAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTA-CA---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACCT--AGGTAAATT------ATATTCCAAGTTCAGTG----G-TACCACAG-ATCAAATGTT-TA-AA-TTTACTAGTAC---TTT-CC---GC-ATTTC--CTCCATT--TTA-TGATTT-G--------GATGTTTT---ACNC-AATC--TTAACAA-C-ATGG-TTCAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGG-CTTAA-AAA-GGAG-AT----CA-GTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA--AATT-AATT----TGTA----GTCAA-C-ACTTATATTTCC--------C-------CAGC-----T--GTT---ATC-GT---A---T-T-GTAAG----TTGCT-T-------TGTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-A-C------GCGAGCGG-AACC--AAC-T-AAATGGGCT--TGT--TTGCTTTGTC-C--ATTTAG-AAGTTTGGCCCCGCCCCCGCCCCCCCCCC-C-AA--TCA-T-A-AGCCTATAAACA-ATTATG--TTGA-AAAAAG-TGTT----CAG----TC-T-AAA-AATCCCGGGCG--AA-AAA--T-TT--AAATTC----------A--A-TTA-TTTTAT-TTG-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG-T-TGGA---A-T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
Reference ( family-3950 ) : TGTGGCCTGGGGATAAT--GGGAC-GGTAAATTGCCCGC--TTAATTGTATGGACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------C-AAAC-AAAACACCCCCCCCC-----AAAAAAA--TAAAACA-AAATATCAGAAAC-AA-AACT-TATAAATCCAG-TTGGNGTAT-----------CATTTC-TAGA-TCCGC-ACCTCAAAATCCTATG-AACTACAATCATAATATTTG-GAG-T-AT-CTTT-TCTGAGGC--A-ATCTNTGGGGTGG--GGG--CGT-A------TATAT-GA--AAA-TGGGA--GTT-A-GG-GTACAT-ACAAATG--TCTCCGTTCT-AAAGTG-GGGTATAT-AT-----TATATAAAGTNCTCCTCGATTACAC-TTCTTCT-TTT-AGCA---GAGATCTACA-CTCGANTGTACAAAA-TTCAA-ACTTC-TT--AAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTA-CA---TGATA-AAGTTAAAATTTTGAC-AT--CAC-GTGGAAACT---AGGTAAATT------ATATTCCAAGTTCAGTG----G-TACCACAG-ATCAAATGTT-TA-AA-TTTACTAGTAC---TTT-CC---GC-ATTTC--CTCCATT--TTA-TGATTT-G--------GATGTTTT---ACNC-AATC--TTAACAA-C-ATGG-TTCAA-TTTAGTAATTAA-TT-TGC-CGTTCA--ATTATTTC---------G--TGAGATCAGCATG-ATTTT-C---TATGACA--G--GTGG-CTTAA-AAA-GGAG-AT----CA-GTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGG-ACA--AATT-AATT----TGTA----GTCAA-C-ACTTATATTTCC--------C-------CAGC-----T--GTT---ATC-GT---A---T-T-GTAAG----TTGCT-T-------TGTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-A-C------GCGAGCGG-AACC--AAC-T-AAATGGGCT--TGT--TTGCTTTGTC-N--ATTTAG-AAGTTTGGCCCCGCCCCCGCCCCTCCCCC-C-AA--TCA-T-A-AGCCTATAAACA-ATTATG--TTGA-AAAAAG-TGTT----CAG----TC-T-AAA-AATCCCGGGCG--AA-AAA--T-TT--AAATTC----------A--A-TTA-TTTTAT-TTG-AATCATA--------ATTT-TTTTTACTGACAT-A---AT-CG-T-TGGA---A-T----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGA
gi|1 : ACACGTAAGAATCATCGCAATGAGCTTTTTCTTGAAATGTTTTTGTTCTATAAC-AAAC-CCAACATATCCCCAA-----AAGAAAAGTTAAAACA-AG-TATC-GAAACTAA-AACT--ATAAATCCAG-TTGGTGTGTTCGTGTACCTTCATTTCATAGA-TCCGC--CCTCAAAATCCAGTGGAACTT---TTATAGTATTTA-GGGAT-ATTCTCTATCTGAGGCTCATATCTTTGGGGTGGAGGGG--TGTTA------TATATTGATGAAG-TGGGATTGTT-A-GG--TACATTACAAATG--TCTCCGTTCT-AAATTG-GG---TAT-A-------AT-TAAAGTTTTCCTCGATTACAC-TTCTTCTATTTGAGCA----AG-TCTACAGCTCGACTGTACAAAAATGCAATACTTCATT--AAGTCCCTCTACAATGCTTCATTTGATTCGAACGCG-AATTCTA-CA---TGATA-AAGT-AAAATTTTGACTAT--CACTGTGGAACCCTTCAGATAAGTT------ATATTCAAGGTT--GTGAGACG-TACCTCAGTATCAAATGTT-TA-AT-TTTACAAGTACCTGTTT-TC---GCCATTTC--CTCCATTATTTA-TG--TT-GAAGTGATTGATATTTT---ACAC-AATCCCTTAACAAGCGATGG-TTCAA-TT-AGTAATTAAATTATGCATGTTCAGGATTATTTCCTTACGGCTG--TACGATCAGTATG-ATTTT-CGTCTATGACA--GCTGTGG-CTAAA-AAAAGGAG-ATACTACA-GTATATTA----CGTGTTACACACGCAGTAATATTCTCAGTGAAAATGG-AAA--GACA-AATT----TGTA----GTCAA-C-ACTTATATTTCC--------C---------GC-----T--G-T---ATC-GT---A---TGT-GTAAG----TTGCT-T-------GATATTGTTATTAG--TCAT-AAGAAT-ATA-CTGGCCAA-GAA-CG--CAGA-TAGTT---GAGTGCT-ACAA-CTAACCAGCGAACGA-AACT--AAT-C-AA
gi|1 : tgcacT--TCT--TCGCTCTGTC-CCAGTTTAG-AGGTT------------CGCCCCCCCCCC-C-AAA-TCA-T-A-CGCCTATAAACA-AT-A-G--TCGA-AAAAAG-TGTTT---CAG----TC-T-AAA-A-TCCCGG-CG--AA-GAAGAT-TT--AAATTC---------------------------T--AATCATA---------TTT-TTTTTACTGACAT-A---AT-CG-T-TTGA---A-TATTAAT--A--ACCACA-GACTCTTTC-CTGAC-TG-AAA-TCT--T-C--TTGT---TATAAC--GCcagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaattcttcgctctgtcccagtttagaggttcgcccccccccccaaatcatacgcctataaacaatagtcgaaaaaagtgtttcagtctaaaatcccggcgaagaagatttaaattctaatcatattttttttactgacataatcgtttgaatattaataaccacagactctttcctgactgaaatcttcttgttataacgcgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|10 : tgcacacacgtaagaatcatcgcaatgagctttttcttgaaatgtttttgttctataacaaacccaacatatccccaaaagaaaagttaaaacaagtatcgaaactaaaactataaatccagttggtgtgttcgtgtaccttcatttcatagatccgccctcaaaatccagtggaacttttatagtatttagggatattctctatctgaggctcatatctttggggtggaggggtgttatatattgatgaagtgggattgttaggtacattacaaatgtctccgttctaaattgggtataattaaagttttcctcgattacacttcttctatttgagcaagtctacagctcgactgtacaaaaatgcaatacttcattaagtccctctacaatgcttcatttgattcgaacgcgaattctacatgataaagtaaaattttgactatcactgtggaacccttcagataagttatattcaaggttgtgagacgtacctcagtatcaaatgtttaattttacaagtacctgttttcgccatttcctccattatttatgttgaagtgattgatattttacacaatcccttaacaagcgatggttcaattagtaattaaattatgcatgttcaggattatttccttacggctgtacgatcagtatgattttcgtctatgacagctgtggctaaaaaaaggagatactacagtatattacgtgttacacacgcagtaatattctcagtgaaaatggaaagacaaatttgtagtcaacacttatatttcccgctgtatcgtatgtgtaagttgcttgatattgttattagtcataagaatatactggccaagaacgcagatagttgagtgctacaactaaccagcgaacgaaactaatcaacagaactaggagaaagctgcgtcgagtgactcctagttttgtatgcggtcctgtcaaaaTATTCTCAGTGAAA-TGA-ACA--A-TT-AATT----TGTA----GTCA--C-ACTTATATTTCC--------C-------CAGC-----T--GTT---ATT-GT---A---T-T-GTAAG----TTGCT-TGTAT---TGTATTG-TAAT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT----GGT-CT-AC-A-C------GCGAGC-T-AACC--AAC-T-AAATGGGC--------NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-NN--NNN-N-N-NNNNNNNNAACA-A-TATG--TTGA-AAAAAG-TGTT----CAG----TC-T-AAA-A---TCGGGCG--AA-AAA--T-TT---AATTA----------A--A-TTATTTTTAT-TTG-AAT-ATATTTTTTTTTTTT-TTTTTACTGACAT-A---AT-CG-T-TGG-------------------------AA-TCTT----CAAC-TG-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAgaactttaaccgcgcacgctatcagtactgagctctgtttattatcaacgtaaacatggcg
gi|11 : TGTGGCCTGGGGATAAT--GGGAC-GGTAA-TTGCCCGCTATTAATTGTA--GACAC---AGAAT----GCAA-GAGCTTTTTCTTGAAATGTTTT----------CAAAAC-AACAC-CCCCCCCCC-----AAAAAAA--TAAAACATAAATATCAG-AAC-AACAAC--TATAAATCCAG-TTGGTGTAT-----------CATTTC-TAGA-TCCGCTACTTCAAAATTCCATG-AACTATAAT-ATA
gi|11 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAG-ATCAAAATTT-TA-AAATTTACTAGTAC---TTT-TC---tagatcaaaattttaaaatttactagtacttttcc
gi|12 : tcattaaattggtcatgataaatgcttgcaatattatgattaaacagtacagcttgataaaaataaattgatataaatagagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtggcctggggataatgggacggtaattgcccgctattaattgtagacacagaatgcaagagctttttcttgaaatgttttcaaaacaacaccccccccccaaaaaaataaaacataaatatcagaacaacaactataaatccagttggtgtatcatttctagatccgctacttcaaaattccatgaactataatatCGTCCCC--CCCCCCCCC-C-A---TCA-C-A-CGCCTATAAACA-ATAGCT--CTGACCAAAAG-TGTG----CAG----TC-TAAAA-AATCCCGAGCG--AC-ATA--A-TT--ATATACG---------A--A-GTA-ATTGAT-TTA-AATCATA--------ATTTATTTTTATTTACATCA---AT-CGAT-CTGA---A-T----AT--ATTACAAC--CA-CCTT---CCGAC-TG-AAA-TCCA-T-ATTTT-T---TATAACCAGCAG-TAc
gi|13 : tttgattgattgattatttattgtttaa-ATCAAAATTT-TA-AAATTTACTAGTAC---TTTTCC---GC-ATTTC--CCTCATT--TTA-TGATTTGG--------GATGTTTTTTAACCG-AATC--TAAACAA-CTATGG-TTCAATTTTAGTAATTAA-AT-TGC-ATTTCA--ATTATTTCG--------G--TGAGATCAG-ATG-ATTTTCC---TATGACAGTG--GTGG-CTTAA-AAG-GGAG-AT----CA-GTA-ATAAATTCCGTGT---ACACACAGttctaagaccaataagctctgttattatgcaacgtaaacttggcg
gi|14 : GATCTACA-CAATATTGTACAATG-TT-AG-ACTTC-T---AAGTA--TATCCGATTAT-CGTTTGAT--AAATGCT-G---CTA-CAACTTGATA-AAGTTAAG-TTTAAAC-TT--CAC-ATGGAAACC---TGCTAAACTGCATGTATATTC-AAGTTCAGTG----G-TATCACCG-ATCAAATGCTGTACAA-T------ATAT---TTT-CC---GT-ATTT
gi|15 : T--TTGCTTTCAC-A--ATTTAG-AAGGTTTGCCC--------CCCCCCCCTC-C-AA----A-T-ATACCCTATAAACA-AAT-TG--TTGC-AAAA---TTTTG---CAG----TC-T-GAA-TCACCCGTGCG--AATGAA--T-TT--ATATTC----------A--A-TTATTTTTAT-TTG-AAT-AT---------ATTT-TTTTTtttagatgtctttat
gi|17 : tTCCCGGGCG--AA-AAA--T-TT--AAATTCAATTATATTCA--A-TTA-TTTTAT-TTC-AATCATA--------CTTT-TTTTTACTGGCAT-A---AT-CG-T-TGG--------------------------A-TCTT---CC-AC-TG-AAA-TCCA-T-A--TT-T---TATAAC--G
gi|18 : gC-AT--CAC-GTGGAAACCTC-AGATAAATT------ATAT-CCAAGTTCAGTG----G-TACAACAG-ACCAAATGTT----AA-TTTACCG-------TTT-CC---GC-ATTTA--CTTCGTT--TTA-TGATTT-G--------G
gi|2 : TGTGACCTGGG-ATAATTCGCGACCAGTAAATTGCCCGC--TTAATTGTATGAACAC---AGAAT----ACAA-GAGC-TTTTCTTGAAATG-TTT----------C-AAACAAAAACACCCCCCCCCCCTAAAAAAAAA--TAAAAAA-AAATATCAGAAACAAA-AACT-TATAAATCCAGTTTGGGGTAT-----------CATTTC-TAGATTCCGCAACTTCAAAATCCTATG-AACTACAATCATAACATTTGCGAG-TAAT-CTTT-TCTGAGGC--A-ATCTG-GGGGTGG--CGGCCCGT-ATAGATCTATAT-GA--AAATTGGGA--GTT-ATGGCGTACAT-ACAAATGCTTCTCCGTTCTAAAAGTGCGGGTATATGATACATGTATATATAGTGCTCCTCGATTACACTTTCTTCT-TTT-ACCA---GATAGATACA-CTCGAATGTACAAAA-TTCAA-ACTTT-CTAAAAGTA--TATACAATGAT-CATTTGAT--GAACGCT-AAT-CTACCA---TGATACAAGTTAAAATTTTGAC-ATTCCAC-GTGGAAAC----AGGCTAATT------ATATTTCAAGTTTAGTG----GTTACCACAGCATCAAA-GTT----AA-TTTACTAGTAC---TTT-TCAAAGC-AGTTCCTCTCCATT--TTATTGATTT-G--------GATGTTAT---TTTT-AATC--TTAACAA-C-ATGGTTTCAA-TTTAGTAATTAA-TT-TGC-CATTCA--ATTATTTC---------GCTTGAGATCAGCGTGCATTTT-C---TAT-ACA--GA-GTGGCCTTAATAAA-GGAGCAT----CAGGTA-ATTAA---CGTGT---ACACACAGTAATATTCTCAGTGAAA-TGGTACAACAATT-AATTGTTATGTA----GTCAA-C-ACTTATATGTCC--------C-------CAGC-----T--GT-----TC--T---A---T-T-GTAAG----TTGCTGTAGGCTTATATATTG-TATT-C--TCATCAGAAAA-ATA-CTGG-CAA---A-CG--CAG--TAGTT---AGGT-CT-AC-ACC------GCAAGCGT-AACC--AAC-T-AAATGGGC---NNN--NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNCCC-C-AATTTCATT-A-CGCCTATAAACA-ATTATG--TTGA-AAAAAG-TGTT----CAG----TCTT-AAACAATCCC-GGCG--AA-AAA--T-TTA-AAATTT----------A--A-TTA-TTTTA--TTG-AATCATA--------ATTTGTTTTTCCTGACAT-A---AT-CG-T-T-GA---A-T----AT--A--ACAACA-AA-ACTT---CCGAC-TG-AAATTCCA-T-A--TT-T---TGAAAC--GCAG-TAGA
gi|20 : ----GTCAA-C-ACTTGTATTTCC--------CGAGCTGACAGCAAGCCT--GTT---ATC-TTCCCA---T-T-GTAAG----GTGCT-T--------GTATTG-TATT-G--TCAT-AGAAAT-A-A-C
gi|21 : TT----CAG----TC-T-AAA-AATCCCGGGCG--TA-AAA--T-TT--AAATTC----------A--A-TTA---TTAT-TTG-AATCAT----------TTT-TTTTT
gi|22 : ---CCGAC-TG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAttttaca
gi|3 : TGTG--CTGGGGATAAT--GGGAC-GGTAAATTGCC-GC--TTA-TTGTATG-ACAC---AGAAT----ATAA-GAG-TTTTTCTTGAAATGTTTT----------C-AAAC-AA--CACCCCCCCCC-----AAAA-----TAAA-CA-AAATATCAGAAAC-AA-AACTATATAA--TCAG-TGGGAGTAT------------ATTTC-TAGA-TCCGC---CTCAAAATCAT-TG-AACTACAAT-ATAATATTTG-GAG-T-AT-TTTT-TCTGAG-C--A----TCTGGGGTGG--GG-----T-A------TATAT-GA--AAA--GGGA--GTTCA-GG-GTACAT-A---ATG--TCTCC-TTCT-AAAGTG-GGGTATAT-AT-----TATATAA-GTACTC-TCGAT-ACAC-TTCTT----TT-AGCATGCAAGATCTACA-CTCGAATGTACAAAA-TC--A-ACTTC-TA--CAGTA--TATACAATGAT-CATTTGAT--GAACGCTGAAT-CTA-C----TGATA-AAGT-AAAATTTTGAC-AT--CAC--TGGAACTC---AGGTAA-TT------ATATTC-AAGTTTAGTG----G-TACCACAG-ATCAAATGTT----AA-TTTTCTAGTAT---TTT-CC---GC-ATTTC---TCAATT--TTA-TGATTT-G--------GATGTTTT---ACACGAATC---TAACAA-C-ATGG-TTCAA-TTTAGTATTAAA-TT-TG--CATT----ATTATTTG---------G--TGAGATCAG-ATG-A-TTT-C---TATGA-A--G--GTGG-C-TAA-AAA-GGAG-AT----CA-GTA-ATAAATTCCGTGT---ACACACAGTAcatctaccgcgacatcagtcaagctctgttta
gi|4 : cattaattgtcatgatatatgcttgcaaatattaggattaacagtacatccttgataaaaataaattgataaaacagaagttactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntA-ATTAA---ATTGT---AC-TA-AATGAT-TACTCAGTGAAA-TGG-A-A--AATTAAATT----TGTA----GTCAC-C-ACTTATATTTCCCATTGATAC-------CAGC-----TGAGTT---ATC-AT---ACAGT-T-GTAAGATTTCTGCT-A-------TGAATTG-TATT-CCTTCATCAGAAATAA-A-TTGG-CAA-G-ATCGCTCAGATTAGCTCAAAGGT-CTCAC-A-CAACG--ACGAGCAG-AACCCAAACATAAAATGGGCCTATGT--TTGGCTTGTCAC--ATTTAG-CAGTTTGACCCCGCCCCCGCC---CCCCT-A-GA--TCA-TCA-AGGCTATAAACA-ATGATGATTTG--AAAAAG-TGTT----CAGAGTCTC-T-AAA-AATCCCGG------------------------T----------A--A-CTA----------G-GGTGATA--------AATT-GTTTTAC---CAT-AAGGATGCG-TATGGAAT-A-T----AT--A--GAAACA-AG-TCTTGCACCGAC-TGAAAA-TCCA-TAA--TT-TTAGTATATC--GCAGATAGA
gi|5 : ggtttctgTTCTCAGTGAAA-TGG-ACA--AATT-AATT----TGTA----GTCAA-C-ACTTATATTTCC--------C-------CAGC-----T--GTT---ATCAAT---A---T-T-GTAAG----TTGCT-T-------AAT-TTG-TATT----TCCT-AGAAAT-A-A-CTGG-CAA-G---CG--CAGA-TAGTA---GGGT-CT-ACAA-C------GCGAGCGG-AACC--AAC-T-AAATGGGCT--T-T--TTGC-TTGTCAC--ATTTAGAAAGTTTGGCCCCACCCCCACCCCTCCCCC-C-AAATTCA-T-A-AGCCTA-AAACATATT-TG--TTGA-AAAAAGTTGTT----CAA----TC-T-AAA-AATCCCGGGCGAAAA-AAA--T-TTTAAAATTC----------AATA-TTA-TTTTAA-TTG-AATCAT---------ATTT-TTTTTTTTACCAT-A---AT-CG-T-TGGACATA-T----AT--A--ACAACA-AT-CTTT---CCAAC-TGAAAA-TCCA-T-AT-TT-T---TATAAT--GCAG--AGAgatataatctaccgcggcatcagtcaagcttctgttttatacttgcggaacgtaaacatggcg
gi|6 : tctgaataattgtacttaatcatATATTCTCAGTGAAA-TGG-ACA--AAT--AATT----TGTACATAGTCAA-CCATTTATATT-CC--------C-------CAGC-----T--GTT---ATC-GT---A---T-TGGTAAG----TTGC--T-------TGTATTG-TATT-C--TCAT-AGAAAT-A-A-CTGG-CAA-G-A-CG--CAGA-TAGTT---AGGT-CT-AC-A-C------GCGAGCGT-AACC--AAC-T-AAATGGGCN--NNN--NNNNNNNNNN-N--NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNCCCC-C-AA--TCA-T-A-CGCCTATAAACA-A-TATG--TTGA-AAAAAA-ATTT----CAG----TC-T--AA-AATCCCGGGCG--AA-ACA--T-TT--AAATTC----------A--ATTTATTTTTAT-TTGAAATCATA--------TTTT-TTTTTA-TGACAT-A---AT-CG-T-TGGA---A-T----ATAGA--ACAACA-AA-TCTT---CCGAC-TA-AAA-TCCA-T-A--TT-T---TATAAC--GCAG-TAGAtctaccgccgggcatcagttcaagctctgattttatttcaacggtaaacatggcg
gi|7 : A-ATTAA---T-TGT---AC------TAATATTCTCAGTGAAA-TGG-ACA--AATT-AATT----CGTA----GTCAA-C-ACTTATATT-CC--------C-------CAGC-----T--GTT---ATC-AT---A---T-T-GTAAG----TTGCT-T--------GAATTG-TATT-C--TCAT-AGAAA--A-A-CTGG-CAA-G-A-CG--CAGA-TAGT-----AGT-CT-AC-A-C------GCGATCGG-AACC--AAC-T-AA-TGGGCT--TGT--TTGCTC-GTC-AC-ATTTAG-AAGTTTG------CCCCC-CCCATCCCC----AA--TCA-T-A-AGCTTA--AACA-AT-ATG--TTGA-AAAAAG-TGTT----CAG----TC-T-AAA-AATCCCGGGCG--AA-AAA--T-TT--AAATTC----------A--A--TA-TTTTAT-TTG-AATCATA--------ATTT-TTTTTAC---CAT-A---AT-CG-T-TGGA---ATT----AT--A--ACAACA-AA-TCTT---CCGAC-TG-AAA-TCCATT-A--TT-T-----TAAC--GCGG-TAGAtctaaccgcagcatcagtcaagctctgttta
gi|8 : ttctgATATTCTCAGTGTAC-TG---CA--A--T-AATT----TGTA----GGCAAAC-A-TTATATA-CA--------T-------CAGC-----T--GTTTAAAT--AT---A---T-T-GTAAG----TTGCT-T-------CGAAATG--GTT-T--TTA----AGAT-A-A--TGG-TGACG-A-CG--CAGA-TAGT----AGGT-CT-AC-A-C------GCGAGAGA-GAAC--AGC-T-AAATGGACT--TGTAGTTGCT--GTC-T--ACT------ATTTGA----------GTTGCTCCCCC-C-AA--TCA-T-A-AACGTATAAA-A-ATACTG--TTGA-AAAA-G-TGTTAATTCAA----TC-T-AAA-AATTCGGGG-----A-AAA--TATT--AAATC--------------A-TTA-TTT-AT-TTG-AATCATA--------ATTT-ATTATAGCCATAT-A---TT-CG-T-TTGA---G-C----AT--AT-ATAATATAA-T-TT---ACGAC-TG--AA-TCGA---A---T-T---TATAACG-GCAG-TAGttaccgcggcatcagtcaagctctgttta
gi|9 : gtttctgacttattgtactA-ATTAA---T-TGT---ACA--------TATTCTCAGTGAAA-TGG-ACA--AATT-AATT----TGTA----GTCAA-C-ACTTATATTTCC--------C-------CAGC-----T--GT----ATC-AT---A---T-T-GTAAG----TTGCT-T-------TA-ATTG-TATT-C--TCCT-AGAAAT-A-AACTGG-CAA-G---CG--CAGA-TAGT-----AGT-CT-AC-A-C------GCGAGCGGGAACC--AAC-T-AAATGGGCT--TTT--TTGC-TTGTA-C--ATTTAG-AAGTTTGGCCCCACCCCCACCCCTCCCCCACAAA--TCA-T-A-AGCCTATAAACA-A-TATG--TTGA-AAAAAG-TGTT----CAA----TC-T-AAA-AATCCCGGGCG--AA-AAA--T-TT--AAATTC----------A--A-TTA--TTTATATTG-AATCATA--------TTTT-TTTTTAC---CAT-A---AT-CG-T-TGGAT--A-T----AT--A--ACAACA-AA-TCTT---CCAACTTG-AAA-TCCA-T-A--TT-T---TATAAT--GCAG-TAGAtactaccggaaatcagtcaagctat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): AACAACACCCCCCCCCCAAAAAAAAACACACCAAAAAACAACAACAATAAAATCAACTACAATCAACTACAATTCCTAATTTCACTATTGCTTCAAAATTCCATTTTATAATAGATA
Unaligned ( gi|19 ): TCATTAAATTGTCATGATAAATGCGTTGCAATATTATGATTAAACAGTTACTGCTTGATAAAATAAATTGATATTAAATAGAAGTTAC
Unaligned ( gi|23 ): TGATTGATTGATTGTAATATATTGTTTTACGCCCCCCCCCCCCC
Unaligned ( gi|24 ): TTTGGTTGATTGATTATTTGTTGTTTAACGTCCC