lowQualScore : 11111111 22222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111 111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 4 1 1 555555555555555555 1 1 1 2222 22 2222222 11 8888888888888888888888888888888888888888888888 111 111 55555555 6666 11 1 1 1 222 444444 22222222 4 222 777 999999999999 4 1 1 888888888888888888888888888888888888888888 55 1 33333333333333333333333333333333333333333333333333333333 0000000000000000000000000000000000000000000000 1 4 4 8888888 6666 1 444444 888888888888888888888888888888888 2 444444 1 3333 333333333333 1 1 1 33 4 222222 2222 222 666666666666 2 2 7777777777777 33 2 777 44444444444 9999999999999999999999999999999999999999999999999999999999 3333333 11111111 11 222222 44444 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 111111 8888888888888888888888888888888888888888888888888888888888888 2 55 4 1 1 4 4 22 22 4 444 55 4 88888888888888 00000000000000000000 333333 1 2 55555555 5555555555555 4 777777 2 11 33333333 222 1 1 2 1 5555555555555555555 2 22 22222222 77777777777777777777777777777777777777777777777777777777777777777 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 222 44444444444444444444444444
lowQualScore : 0 0 0 5 999999999999999999 0 0 0 7777 99 99 6 0000000 55 6 2222222222222222222222222222222222222222222222 777 666 22222222 0000 88 3 3 5 888 333333 11111111 0 111 000 222222222222 6 0 7 7 999999999999999999999999999999999999999999 55 5 88888888888888888888888888888888888888888888888888888888 6 6 8888888888888888888888888888888888888888888888 5 0 0 5555555 0000 7 222222 6 6 999999999999999999999999999999999 0 222222 5 8888 3 666666666666 5 5 5 55 0 888888 1111 111 444444444444 4 0 3 4444444444444 00 99 0 000 77777777777 8 2 9999999999999999999999999999999999999999999999999999999999 66 66 9999999 55555555 888 55 777 88 5 66 0 000000 55 66666 888 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55 666 2 8888 8 222222 0000000000000000000000000000000000000000000000000000000000000 2 4 55 6 0 5 5 0 0 11 11 0 000 55 0 55555555555555 22222222222222222222 555555 5 0 00000000 0000000000000 0 333333 3 22 1 55555555 7 333 3 6 6 1 3 7777777777777777777 7 4 88 5 00000000 00000000000000000000000000000000000000000000000000000000000000000 4 5 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 55 5 0 55 66 444 55555555555555555555555555 8 6 2
lowQualScore : . . . . .................. . . . .... .. .. . ....... .. . .............................................. ... ... ........ .... .. . . . ... ...... ........ . ... ... ............ . . . . .......................................... .. . ........................................................ . . .............................................. . . . ....... .... . ...... . . ................................. . ...... . .... . ............ . . . .. . ...... .... ... ............ . . . ............. .. .. . ... ........... . . .......................................................... .. .. ....... ........ ... .. ... .. . .. . ...... .. ..... ... ... ....................................................................................................................................... .. ... . .... . ...... ............................................................. . . .. . . . . . . .. .. . ... .. . .............. .................... ...... . . ........ ............. . ...... . .. . ........ . ... . . . . . ................... . . .. . ........ ................................................................. . . ........................................................................................................................................................................................................................................................................................ .. . . .. .. ... .......................... . . .
lowQualScore : 0 7 0 0 888888888888888888 0 0 0 8888 22 77 7 2222222 88 7 9999999999999999999999999999999999999999999999 888 222 00000000 0000 33 3 3 0 000 000000 00000000 0 000 000 000000000000 0 0 0 0 000000000000000000000000000000000000000000 00 0 00000000000000000000000000000000000000000000000000000000 0 0 0000000000000000000000000000000000000000000000 0 0 0 0000000 0000 0 000000 0 0 000000000000000000000000000000000 0 000000 0 5555 0 000000000000 5 5 5 55 0 000000 0000 000 555555555555 0 0 0 0000000000000 00 00 0 000 55555555555 0 0 9999999999999999999999999999999999999999999999999999999999 11 99 2222222 66666666 888 99 888 00 0 99 1 999999 44 55555 888 777 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 55 444 9 9999 2 222222 3333333333333333333333333333333333333333333333333333333333333 0 7 00 0 0 0 0 0 0 00 00 0 000 00 0 00000000000000 00000000000000000000 000000 0 0 55555555 2222222222222 0 777777 7 00 2 33333333 3 333 3 0 0 0 5 8888888888888888888 0 0 55 7 77777777 77777777777777777777777777777777777777777777777777777777777777777 4 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 44 0 0 55 11 444 11111111111111111111111111 0 0 5
consensus : NNNTTTCGCTGCCAACG-TTTCCGANGTGTA-AA-TTTCCA--AGTT-G-CC-AAA--N-TTG--CAA-ACGTC-ATA--A--AATT--TTACGTAAGAA--AT-TGTT-A---TGACGTTT-GCC-TTG-CT----CAA--CGTT--NTTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCCTANNACAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATG-TTGGAGCGTGTACA-CTTGTACCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTAC-GGGATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATG-ATGTTATACCATTTTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGNNATGACCCTTGTTCCTTATGNCTTTAAAAGTAAAC---CAC-ATGTATGAAGTTAAAATGTCACAGGGCA-TGAAAAATCATACAAATTTCACTTTTTCTATACTGTACACCC-ATCTATCNGTGATNGCAAAACTCTGTCCTGCTCAAAAATGTTTTAATAATTAGTCTCATGGTCCATTGCACTCCTCGCAACANGCGCTGCCTTTT---CCTACACTGGAAGTG-----------AAG-TTCTCCTGGAGAAAA-GC--CGTCAA--TTNTA----ATCAATAGAATTCT-----GG---T-AC----GAGTTCTCCT--G--GA---G--AAAAC--T--T-TG---TCAATT---TTTATC-AA-TA--AAATC-----TGGGT-AC----GAGTT---CT---GGAGAAAAA-TTT-TTT---TTTCTGTCAGTTTATTAAAGTTACA----T-AGAAAT-GTTGNNTATG--AGTTCT----GANAAAGGA-GAAAAACT-T-TC-TTTGTC-AAT-T-CTA-TC--ATAT---AAATN-TGGGT--AC---GAGTTCTCCTGGA---GAGAAAACA----AAAC----TTT-T--CGT--T-T-TC---TCA--T-----AAAA--A--TTGGG-TACGAGT--TTTCCTGGAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACTTGCAATT-GTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATTA-GCT-AAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAAATNNAGATTAAGCTCG-CG-TCA-AAATTTT-GATTCCAGCATGACACG----GTTTTTCTC-CAGAAATAT-GATA-A-AATGA-NTTTTTTT-CTTTTAGGAGAACTCGTACCC-AGATTTCTATTGAT--AA---------------TTTTTTCCCAGGA-AAACTC-G--------TACCCCAGAATTTT------AT--TT-GAT-AAAAT-TG-A---C--A--G----TTTTTT-------CTCCAGGAGAACTC-GT-ACC-CA-ATATCTTTNT-GA-CA-GAAATGAC-------AAA---GTT--------TTTTC--CAGGAGAAC-TCGTA-ACC-CAGATTTTA-TT-GA-TA-AAATTGA----N-----AA--GTTTTTTCTCCAGGAGA-ACTCGTA--C-----CC-----T-------A--TTTT--N-TAG-ATAAAAATTGAN--AACANN-TTT-TTCTCC---AG----------AACTC-GTACC-CA-TAT-TTTA-TT-T--ATAAAT-TGA---C-----N-AATTTTTTC-TCCAG-GAGAACT--CGTA--CCC-NGATTTTTATATGATAGAAATGA---C-AAAGTTTTT-CTCCAGGAGAACTCGTANCCT
Reference ( gi|1 ) : ACCTTTCGCTGC-AGCG-TTTCTGAC-T----AA-TTTTCACCAATT-G-CC-AAA--T-TTG--CAA-GCGTC-ATA--A--AATT--TGACGTAAGAACAAT-TGTTTA---TGACGTTT-GCC-TTGTCT----CAA--AGTT--TTTTTCCATGTTT--TGA-C-GTACAGCGACCATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATT-TGTATTTTAATT----CA--GATTGGGAATGTTTGTACCGTGTACAGAGTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTA--AGATATATATCTTTCTATAAGATTATGTTGAATTTTTTTTTACACAGTATTCTTCA-AAAACATTTAAATAATCATTCACTTGCACGGTAAGCAAC--TTTTGTTTATG--TGATCAG---AGAAC-AAACTTTACG----AAAACCTCAC--ATGAAAATTA-ACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGACTCACTTCTTGTTTCTGCAAG-GATCCAATAGCGTTTAC--GTTCGAGATAAAAAGTTATAATGAACCGACACATCGG-CTAATTTTAGTTGCAGA-CC-CCCTTCCCAGTTCTGT-AGCT-AATCACCATTG----TAAAAACGT-TTCACATCGAAATGAATACGTAGTAGC-TATATGC-GCTA-GACCCTTGTTTC--A-GTCTTTAAAAGTAAACGTTTACGGTGTATGAAGTTAAAATGT-ATAGGGCAGTGAAAAATCA-ACAA-TTT-AC-TTTTCTATAATGTATACCGGATTC-TCAG-GATTACAAAACTC-GTCCTGCTCGAAAATGTTTTAATAATTAGTCTCCTTGTCCATTTCACTCCTCGCAACAAACG-TGCCTTTTTTCCCTACACTGGAAGTG-----------AAG-TTCTCCCGGAGA--------CGTCAA--TTGTA----ATCAATAGAATTCT-----GG---T-GC----GAGTTCTCCT--G--G----G--AAAAC--T--T-TG---TCAATT---TTTATC-AA-TA--AAATC-----TGGGT-AC--GGGAGTT---CT---GGA-------TTT-TTT---TTTCTGTCAGTTTATTAAAGTTACAAATGT-AGAAAT-GTTGGGTATGGAAATTCT----GAAAAAGGA-AAAAAACTCTTTC-TTTGTCGAAT-T-CTA-TC--GTAT---AAATGGTGGGT--AC---GAGTTCTACTGGA---GAGAAAACA----AAAC----TTT-T--CGT--T-T-TC---TCA--T-----AAAA--AGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGA--TGTAATTTGTGGTTTTGTTTGGC-AATAATTACAATACTGTGAGAACATCGATCTCAATAAAACAACAAT-TTCGATTCTATAACAATC--GATGT-ATACGATATATATAATTTTGTAGGTAAAGATAATTAAGCTTAAAATTA-TCA-GTCAAGATTTTATCGAAATTTT-ATGATAAATTTT--A-TCAAGATTAAGCTCG-TG-TCATAAATTTTTGATTCCAGCATGACACGGAGTGTTTTTCTCACAAGAATATGGATA-G-AATGA-ACTTTTTT-CTTTTA-GAGAACTCATACCCCAGATTTCTATTGAT--AA---------------TTTTCTCACAGGATGAACTC-G--------TACCTCAGAATTTT------AT--TT-AAT-GAAAT-TG-A---C--A--G----TTCCTT-------GTCCAGGAGAACTC-GT-ACCTCAGATATCTTCAT-GG-CA-GAAATGACTAAAAAAAAA---ATT--------TT-----CAGGAGAACGTCGTATACCGCAGATTTTA-TT-GA-TA-AAACGGA----A-----AA--GTTTTTTATCCAGGAGAGACTCGT---C-----CC-----T-------G--TTTT--A-TAG-ATGATAATTGAT--AGTAGA-----TTCTCC---AG----------AATTT-GTAACACAGTAT-TTTA-TT-T--ATAAAT-TGA---C-----C-AATTTTTTC-TCCAGCGAGAACT--TGTA--CCC-TGATTTTTATATAATAAAACTGA---C-AAAGATTTT-CTTCAGGAGAACTCGTACCCTGATA
gi|2 : TTTCGCTGCCAGCGCTTTCCGACGT----AAATTTTCA--AATTTG-CCCAGA--A-TTG--CAA--CGTC-A-A--A--AATT--TGACGTAAGAA--ATCTGT--A---TGACGTTTAGCC-TT--CCGGGACAA--CGTT--ATTTTC-ATGTTTGCTGAACAGTACAG-GCACATGCGCTCTTTTCCTC-TGCGGCTGTGCGCTT-TAATAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATG-TTGGAGCGTGTACA-CTTGTACCAAA
gi|7 : TTTCGCTGCCAACG-TTT-TGAA-TGTA-AA-TTTCCA--AGTT-G-CC-AAA--A-TTG--CAA--CGTC-AAA--ATTAATT--TTACGTAAGAA--AT-TGT--A---TGACGTTT-GC-------T----CAA--CGTT--ATTTTTCATGTTTA-TGA-C-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTG-GCCTAATACAAGAatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|8 : TTTGCTGCCAACG-TTT-TGAA-TGTAAAA-TTTCCAA-AGTT-GGCC-AAAATT-TCG--CAA-ACGTC-AAATTA--AATT--TTACGTAAGAA---T-TGT--A---TGACGT---G---TTG-CT----CAA---GTA--TTTTTTCATGTTTA-TGGGC-GTACAG-GCACATGT--TCTTTCTCTCTTGCG-CTca
gi|12 : c-TTTCCGACGT----AG-ATTTCAT--ATT-G-CC-AAA--TATTGGACAA--CGTCAATC--A--ATTT--TGACCTA-----GAT-T-TTGAT--TGCCGTTT-GCCATTG-CT----CAACCAGTTAGTTTT---ATGTTtgg
gi|7 : cG--CAA-ACGTC-ATA--C--AATTTCTTACGTAA----AAT-TAATTT---TGACGTTag
gi|8 : tttcgctgccaacgttttgaatgtaaatttccaagttgccaaaattgcG--CAACACGTC-ATA--C--AATTC-TTACGTAAAA--------TTTAATTTGACGTTT-GCtcaacgttatttttcatgtttatgacgtacaggcacatgttctttctctctgcgctgtggcctaatacaagaca
gi|2 : ctttgctgccaacgttttgaatgtaaaatttccaaagttggccaaaatttcTACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTAC-GGGATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATG-ATGTTATACCATTTTTACACtcaagtattttttcatgtttatgggcgtacaggcacatgttctttctctcttgcgcttgg
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGCGATGACC-TTGTTTCTTATGGCTTTAAAAGTAA-----CAC--TGT-TGAAGTTAAA-TGT--CAAGGCA-TGAAAAATCATACAAATTT-ACTTTTTCTATACT-TACACT--ATTTATCAGTGATTACAAAACTCTGTCCTGCTC-AAAATGTTTTAATAATTAGTCTCATGATCCATTGCACTCCTCGCAACAAGCGCTGCCTTTT---CCTACACTGGAAGTGAAGCTTCTACCAAG-TTCCCCCGGAGAAAATGTTTCGTCAA--TTTTA----ATCAA-AGAA-ACT-----GGGTTT-CT----GAGTTCTCCT--G--GAA--A--AAAAC--T--T-TGTTTTC-ATT---TTTATC-AATTA--AAAT------TGGGT-AC----GAGTT---Ccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|14 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttaca-TATATGC-AGCA-GACCCTTGTTCC--A-GTTTTTAAAAAT-AAC-------ATGTATGAAGTT-AAATGTCATAGG
gi|10 : ATCA-A-AA-TTTCAC-TTTTCTATACTGTATACCC-ATCT-TTTG-GATAGCAAAACTT-GTCCTATTCAAAAATGTTTTAAT-------------GTCCATT--ACTCCTCGCAACACGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAG-ca
gi|3 : AGTG-----------CAGCTTCTCCTGGAG------------CAAGATTGTACCACATCAATA----TCT-----GG---T-ACT---GAGTTTT-----G--GAGAAG--AAATC--TGTT-TG---TCAATT---TTTATT--A-TA--AAATTATTAATAGGTCACTAAGGAGTT---CT---
gi|9 : aactcgtacccaagagaactcatgcccttttttttcccaggaaaactcgtacttcgatttctatttgaataatgtgcaaagttttttttttctccggaagaactcatatccaaatgtctatgacagaaattacaaagtttttctccaggagaactgatccagatttatcagataaagttaaatgaccaagtttttcaccatg-----------AAG-TTCTCCTGGAGAAAAAAC--TGTCAT--TTCT-----GTC-ATAAAATTATG----GG---T-AC----AAGTTTTCCT--ctatttttctggatacgag
gi|5 : tcaaataggttacAG-TTCTCCTGGAGA------------AA--TCGTA----CCCGACAATATCTT-----GG---A-ACAT--GAGTTCTCCT--GAAG----A--AAAAC--T--TAAG---TCA--T---TTTACC-AA-AAAGAAATA-----TGGGT-AC----GAGTT---CT---aaaccctaaacaataaagtttatctcattcatcatgttacaaaaataggtacgagttttcctagacaaaaac
gi|3 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggGTCAA--TTTTT----ATTA-TAAAATTATTAATAGG---TCACTAAGGAGTTCTCAT--G--GTG--A--AAAAC--T--T-GG---TCATTTAACTTTATCTGA-TA--AA-TC-----TGGAT--C-----AGTT---CTCCTGGAGAAAAA-CTT-TGTAA-TTTCTGTCA--------------------T-AGACAT--TTGGATATG--AGTTCTTCCGGAGAAA--A-AAAAAA------C-TTTG-CACAT-T-AT--TCAAATAG---AAATCG-AAGT--AC---GAGTTTTCCTGGG---AAAAAAAcgtaccctattttctgggtacgagttctc
gi|3 : aactcgtacccaagagaactcatgccctAATAGA-----------G---T-GC----AGCTTCTCCT--G--G----AGCAAGAT--T--G-TA---CCA--------CATC-AA-TA-----TC-----TGG-T-AC--TG-AGTT---TT---GGAGAAGAAATCT-GTT---T----GTCAATTT-TTA---TTATAAAATT-ATTAATAGGTCACTAAGGAG-TTCT----CAT---GGT-GAAAAACTTGGTCATTT----AAC-T-TTA-TC--TGAT---AAATC-TGGAT---C----AGTTCTCCTGGA---GA------A----AAAC----TTT-----GTAAT-T-TCTG-TCA--T-----AGAC--A--TTTGGATATGAGT--TCTTCCGGAGAAAAaaacagatttcttctccaaaactcagtaccagatattgatgtggtacaatcttgctccaggagaagctgcactctatttttctggatacgag
gi|13 : aactcgtacccaagagaactcatgcccttttttttcccaggaaaactcgtacttcgatttctatttgaataatgtgcaaagttttttAATAGAAATCTG----GG---T-AT----GAGTTTTCCTAAA--A----G--AAAAA--A--A-TG---TC-ATT---TATATC-Atttctggatacgag
gi|9 : tgtcaaaattttgattccagcatgacacgttttttctccagaaata---T-AC----AAGTTCTCCT--G--GA---G--AAAAA--A--C-TG---TC-ATT---TCTGTC--A-TA--AAATTA----TGGGT-AC----AAGTT---TT---t
gi|2 : tcaaataggtC----AAGTTCCCCC--G--GA---G--AAAATGTT--T-CG---TCAATT---TTAATC-AA-AG--AAA-C-----TGGGT-TT--CTGAGTTCTCCT---GGAAAAAAACTTTGTTTTCATTTTTATCA----ATTAAAATTcctaaaccctaaacaataaagtttatctcattcatcatgttacaaaaataggtacgagttttcctagacaaaaac
gi|16 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctacT---TTTATC-AA-TA--AAATC-----TGGGT-AC----GAGTT---gggtacgagttc
gi|6 : gacaTT-TTT---TTTCTGTCAGTTTATAAAAGT-ACA--TGGGAGAAAT-GTAGCGTATG--AATTCT----GAAAAAGGA-AAAAAACTCT----TTTGTC-AATGT-CTA-T---GTATTTAAAGTGGT--TT--ACTGTGAGTTCTACTGGA---GAGAAAACA----AAAC----TTTCT--CGT--T-T-TCGTTTTAT-T-----AAAA--Att
gi|2 : gaGGA-AAAAAACTTTGTT-TTCAT----T-T-TTA-TC--A-ATTA-AAAT--TGGGT--AC---GAGTTCtt
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctGGA-GAAAA--TGTTTC----GTC-AAT-T-TTAATC--AAAG---AAAC--TGGGTTTCT---GAGTTCTCCTGGA---AA------A----AAACTTTGTTT-T--CAT--T-T-TTA--TCAATT-----AAAA-----TTGGG-TACGAGT
gi|3 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccGGA-GAAAAACT-------TTGT--AAT-TTCTG-TC--ATAG---ACATT-TGGAT--AT---GAGTTCTTCCGGA---GAAAAAA-A----AAAC----TTT-GCACAT--TAT-TC---AAA--T-----AGAA--ATC--GAAGTACGAGT--TTTCCTGG-GAAAAtc
gi|9 : aactcgtacccaagagaactcatgcccttttGGAGAAAAAACT---------GTC-ATT-T-CTG-TC--ATA----AAATTATGGGT--AC---AAGTTTTCCTAAACCCTAAACAATA----AAGT----TTA-T--CTC--A-T-TCA--TCA--TGTTACAAAA--A---TAGG-TACGAGT--TTTCCTAGACAAAAaggagaactgatccagatttatcagataaagttaaatgaccaagtttttcaccatgagaactccttagtgacctattaataattttataataaaaattgacaaacagatttcttctccaaaactcagtaccagatattgatgtggtacaatcttgctccaggagaagctgcactctatttttctggatacgag
gi|5 : tcaaataggttacaagttctcctAAT-T-TTA-TC--A-AT---AAATTCTGGGT--AC---GAGTTGTCCTGGA---ac
gi|5 : tta---AAATA-TGGGT--AC---GAGTTCT-CCAGA----AGAAATCATTATAAA--------------T--T-T-TA---TTA--T-----AAAA--A-TCAGGGTgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaagtttttcttcaggagaactcatgttccaagatattgtcgggtacgatttctccaggagaactcgtaccctattttctgggtacgagttctc
gi|9 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctGGTT--AC---AAGTTCTCCTGGA---GAAAAAAC--------------TG-T--CAT--T-TCTG---TCA--T-----AAAATTA---TGGG-TACAAGT--TTTCCTActttttggtaaaatgacttaagtttttcttcaggagaactcatgttccaagatattgtcgggtacgatttctccaggagaactcgtaccctattttctgggtacgagttctc
gi|15 : tcaaataC---GAGTTTTACTGGA---GAGAAAACA----CAAC----TTTCT--CGT--T-T-aaccctaaacaataaagtttatctcattcatcatgttacaaaaataggtacgagttttcctagacaaaaac
gi|4 : TTAGACTTGCAATT-GTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATTA-GCT-AAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAA-TACAGATTAAG---G-CGATCA-AAATTTT-GATTCCAGCATGGCACG----GTTTTTCTC-CAGAAATAT
gi|11 : TTT-ATGATAAATTTT--AATCA-GATTAA-CTCGGTG-TCA-AAATTTT-AATTCCAGCATGACACG----GTTTTTTTTACAGAAAAAT-CATA-GAAATGA-CTTTTTTT-CTTTTAGGAGAAC
gi|13 : -TG-TCA-AAATTTT-GATTCCAGCATGACAC---GT-TTTTTCTC-CAGAAATAT-GATATA-AATGACATTTTTTT-CTTTTAGGAAAACTCATA-CCCAGATTTCTATT
gi|6 : ACATTGACA-A-AA-GA-GTTTTTTTCCTTTTT-CAGAATTCATACGCTACATTTCTt
gi|3 : gattttttttctgtcagtttataaaagtacatgggA-GAGAACTCATGCCC----TT----------------------------TTTTTTCCCAGGA-AAACTC-G--------TACTTC-GATTTCT------AT--TTGAAT---AATGTGCA---A--A--GTTTTTTTTTT-------CTCCGGAAGAACTC-AT-ATC-CAAATGTCT--AT-GA-CA-GAAATTAC-------AAA---GTT--------TTTCTC-CAGGAGAAC--TG---ATC-CAGA-TTTA-TCAGA-TA-AAGTTAA----ATGACCAA--GTTTTTCA-CCATGAGA-ACTCCT---TAGTGACC-----TATTAATAA--TTTT--A-TA--ATAAAAATTGACA-AACAGATTTC-TTCTCC---AA----------AACTCAGTACCAGA-------TA-TT-G--ATG----TGG---TA----C-AA-TCTTGC-TCCAG-GAGAAGC--TGCA--CTC-T-ATTTTTctatgtatttaaagtggtttactgtgagttctactggagagaaaacaaaactttctcgttttcgttttattaaaaatt
gi|5 : aactcgtaccca-GACAACTCGTACCC-AGAATT-TATTGATAAAA---------------TTGNNNNNNNNNNNNNNNNN-NNNNTTTTCTACC-CTGATTTTT------A----T-AAT-AAAAT-TT-A---T--A--A----TGATTT-------CTTCTGGAGAACTC-GT-ACC-CATATTTCTTTTT-GG-TA--AAATGACT------TAA---GTTTTTC----TT-----CAGGAGAAC-TCATGTTCCA-AGA---TA-TT-G--T-----CGGG----T-----AC--GATTTC--TCCAGGAGA-ACTCGTA--C-----CC-----T-------A--TTTT--C-TGG-GTctggatacgag
gi|2 : ttatccagGAACTCGTACCC--AATTTTAATTGAT--AAAAATGAAAACAAAGTTTTTTTC-CAGGA-GAACTCAG--------AAACCCAG---TTT------CT--TT-GATTAAAAT-TG-A---CGAA--A----CATTTT-------CTCCGGGGGAACTT-Gacgagttctc
gi|16 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctacAACTCGTACCC-AGATTT-TATTGAT--AA---------------
gi|9 : gaca---------------TTTTGTC-TAGGA-AAACTC-G--------TACCT----ATTTTTGTAACATGATG-AAT-GAGAT-AA-A---C----------TTTATTGTTTAGGGTTTAGGAAAACTT-GT-ACCC---ATAATTTTAT-GA-CA-GAAATGAC---------A---GTT--------TTTTCTCCAGGAGAAC-TTGTA-ACCaatt
gi|9 : tcaaataAGGA-AAACTT-G--------TACC-CATAATTTT------AT-----GAC-AGAAA-TG-A---C--A--G----TTTTTT-------CTCCAGGAGAACTT-GTAACCTac
gi|16 : tcaaatGACAAACTC-G--------TACC-CAG-ATTTT------A---TT-GAT-AAAAT-Taaaccctaaacaataaagtttatctcattcatcatgttacaaaaataggtacgagttttcctagacaaaaac
gi|2 : GAACTC-G--------TACCC---AATTTT------AA--TT-GAT-AAAAA-TG-AAAAC--AAAG----TTTTTT--------TCCAGGAGAACTCAGA-AACCCAG-TTTCTT--T-GATTA-AAATTGAC-----GAAAC---ATT--------TTCTC--CGGGGGAACTTGGTA
gi|5 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttcTT-------ATCCAGGACAACTC-GT-ACC-CAGA-AT-TTATT-GA-TA-AAATTG------NNNNNN---NNN--------NN-----NNNNNNNNNNTTTTCTACC-CTGATTTTT-AT-AA-TA-AAATTTA----T-----AATGATTTCTTCT---GGAGA-ACTCGTA--C-----CCATATTT-------C--TTTTTGG-TAA-A--ATGACTTA---AGT-TT-----TTCTTC---AG----------GA----G-AACTCA-TGT-TCCA-------AGATAT-TGT---CGGGTAC-GAT---TTC-TCCAG-GAGAACT--CGTA--CCC-T-ATTTT
gi|9 : TT-------GTCTAGGAAAACTC-GT-ACC-----TATTTTTGT-AA-CATG--ATGAATGAGATAAACTTTATTGTTTAGGGTT-----TAGGAAAAC-TTGTAC-CCATA-ATTTTA--T-GA-CAGAAATG------A-----CA--GTTTTTTCTCCAGGAGA-ACTTGTA--A-----CC-----T-------A--TTTctgggtacgagttctc
gi|2 : tcGAACTC-GT-ACC-CA---ATTTTAATTGA-TA-AAAATGA----AAACAAA---GTT--------TTTTTC-CAGGAGAAC-TCAGAAACC-CAG-TTTCT-TT-GATTA-AAATTGAC---G-----AA--ACATTTTCTCCGGGGGA-ACTTGaaac
gi|5 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctac--------TC-----CAGGACAAC-TCGTA--CC-CAGAATTTA-TT-GA-TA-AAATTGN----N-----NN--NNNNNNNNNNNNNNNNNTTTTCTA---C-----CC-----T-------GATTTTT--A-TA--ATAA-AATTTAT--AATGAT-----TTCTTCTGGAG----------AACTC-GTACC-CA-TAT-TTCT-TT-TTGGTAAAA-TGA---C-----TTAAGTTTTTC-TTCAG-GAGAACTCATGTT--CCA-AGA-TATTGTCGGGTA----CGA-----------TTT-CTCCAGGAGAACTCGTACCCT
gi|2 : ttaGAAC-TCGTA--CC-CA-ATTTTAATT-GA-TA-AAAATGAAAACA-----AA--GTTTTTT-TCCAGGAGA-ACTCAGAAAC-----CC-----A-------G--TTTC--T-TTG-ATTAAAATTGACGAAACATT-----TTCTCCGGGGG----------AACTT-Gattttctgggtacgagttctc
gi|16 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctacAAC-TCGTA--CC-CAGATTTTA-TT-GA-TA-AAA
gi|9 : gacaTTTTTGTCTAGGAAA-ACTCGT---A-----CC-----T-------A--TTTTT-G-TAACATGATGAATGAG--A-TAAACTTTATTGTTT---AGGGTTTAGGAAAACTT-GTACC-CATAAT-TTTA-TGAC--AGAAAT--GA---C-------AGTTTTTTC-TCCAG-GAGAACT--TGTA--ACC-T-ATTTtt
gi|2 : tcACTCGTA--C-----CC-----A-------A--TTTT--AATTG-ATAAAAAT-GAA--AACAAAGTTT-TTTTCC---AGGAG-------AACTCAGAAACCCAGTTTCTTTG-AT-T--A-AAAT-TGA---CG----A-AACATTTTC-TCCGG-GGGAACT--TGc
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctacG----------AACTC-GTACC-CA--AT-TTTAATT-G--ATAAAAATGAAAAC-----A-AAGTTTTTT-TCCAG-GAGAACT--CAGAAACCC-AGTTTCTTTGAT--TAAAATTGA---CGAAACATTTT-CTCCGGGGGAACTTGtc
gi|13 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctac-T--ATAAAT--GA---C-------ATTTTTTTCTTTTAG-GAAAACT--CATA--CCC-AGATTTCTAT
gi|3 : tgtcaaaattttgattccagcatgacacgttttttctccagaaatatgaTTTTTTC-TCCGG-AAGAACT--CATA--TCC-AAATGTCTATG--ACAGAAATTA---C-AAAGTTTTT-CTCCAGGAGAACTtt
gi|9 : aactcgtacccaagagaactcatgcccttttttttcccaggaaaactcgtacttcgatttctatttgaataatgtgcaaagttttGAAAACT--TGTA--CCCATAATTTT---ATGACAGAAATGA---C-A--GTTTTTTCTCCAGGAGAACTTGTAACCTgatccagatttatcagataaagttaaatgaccaagtttttcaccatgagaactccttagtgacctattaataattttataataaaaattgacaaacagatttcttctccaaaactcagtaccagatattgatgtggtacaatcttgctccaggagaagctgcactctatttttctggatacgag
gi|2 : tcaaatGAACT--CGTA--CCC--AATTTTAAT-TGATAAAAATGAAAAC-AAAGTTTTT-TTCCAGGAGAACTCctaaaccctaaacaataaagtttatctcattcatcatgttacaaaaataggtacgagttttcctagacaaaaac
Alignments
lowQualScore : 111111
lowQualScore : 33333 11 11 11 1 22222222 111 222 11111111111 111 11 1 1 1 11 1 1 222 2 1 2222 11 2 222 33333333333333333333333333333333 2 11 2 2 2 1 2 11 11 2222 1 2222 11 222 1 4444444444444444444444444444444444444444 2 22 1 2 11 2 2 11 111 1 1 1 1 2222 11 333 2 1 2222 4444 7777777777 2 2 2 2 1 2 1 2 11 1 111 1 2 222 66666666666 88888888 1 11 33333 33 333 1 1 11 111111 1 66666666 22 33333 2 2 2 333 222222 1 2 333 2 11 2 22 666666666666666666666666666666666666666666666666666666666666666666666 11 2 1 2 1 11 1 2 2 2 2 2 11 1 2 1 44 11 1111111 1 1 1 2222 2 1 2 11 1 22222 2 1 111 2222 33333 333333 1 11 6666666666666666666666666666 22 111 222222 1111 11 22222 22 1 333333333 1 1 555555555555555555555555 11111 1 11 444444444444444444444444444444
lowQualScore : 2 8 8 55555 11 44 8 8 8 99 11 8 3 88888888 5 0 777 8 999 0 8 77777777777 666 1 3 77 9 0 0 33 0 0 6 0 555 0 0 5 4444 88 2 0 2 555 22222222222222222222222222222222 0 77 0 0 4 4 0 4 4 5 2 4 88 3 2 55 0 88 3 88 5555 4 5 3 2 4444 2 88 222 5 0000000000000000000000000000000000000000 0 4 77 4 5 0 4 2 77 3 0 0 88 000 5 5 4 5 5 2222 99 555 2 2 0 5 7 4444 6 0 5555 1 2222222222 7 3 3 0 0 3 7 2 3 6 0 6 3 0 5 1 3 11 44 2 7 222 5 1 3 333 33333333333 6 22222222 1 5 99 66666 55 555 5 3 6 88 555555 4 5 88888888 4 22 77 6 1 6 22222 0 0 0 4 666 2 444444 5 6 555 0 88 0 77 4 999999999999999999999999999999999999999999999999999999999999999999999 88 0 3 5 2 0 2 2 5 88 88 5 0 0 66 0 0 0 99 5 0 2 4 3 2 5 77 55 4444444 0 0 0 1111 0 0 6 44 6 6 3 7 77777 2 0 6 5 4 888 1111 2 55555 888888 3 1 3 88 3333333333333333333333333333 0 8 3 88 8 8 6 5 777 5 111111 2 2 7 8 7777 3 33 55555 1 55 2 1 555555555 0 0 2 555555555555555555555555 22222 7 3 0 2 33 444444444444444444444444444444 3 1
lowQualScore : . . . ..... .. .. . . . .. .. . . ........ . . ... . ... . . ........... ... . . .. . . . .. . . . . ... . . . .... .. . . . ... ................................ . .. . . . . . . . . . . .. . . .. . .. . .. .... . . . . .... . .. ... . ........................................ . . .. . . . . . .. . . . .. ... . . . . . .... .. ... . . . . . .... . . .... . .......... . . . . . . . . . . . . . . . . . .. .. . . ... . . . ... ........... . ........ . . .. ..... .. ... . . . .. ...... . . ........ . .. .. . . . ..... . . . . ... . ...... . . ... . .. . .. . ..................................................................... .. . . . . . . . . .. .. . . . .. . . . .. . . . . . . . .. .. ....... . . . .... . . . .. . . . . ..... . . . . . ... .... . ..... ...... . . . .. ............................ . . . .. . . . . ... . ...... . . . . .... . .. ..... . .. . . ......... . . . ........................ ..... . . . . .. .............................. . .
lowQualScore : 5 0 2 44444 00 44 0 0 0 00 00 0 6 00000000 4 8 000 0 222 8 0 44444444444 000 0 8 00 0 0 0 88 0 0 7 7 777 7 0 0 0000 55 5 0 5 555 00000000000000000000000000000000 0 55 0 0 0 0 0 0 0 5 5 0 00 0 5 00 0 55 0 55 5555 0 5 0 5 5555 5 00 000 5 0000000000000000000000000000000000000000 0 0 55 0 5 0 0 5 55 0 0 0 55 555 5 0 0 5 0 5555 55 000 5 5 0 5 3 7777 7 7 3333 0 0000000000 3 7 3 7 0 7 3 0 7 7 7 7 7 7 3 0 7 77 00 3 3 777 0 0 3 333 33333333333 0 00000000 0 5 55 55555 55 000 5 3 7 33 000000 0 5 55555555 0 00 55 0 0 0 00000 0 0 0 0 555 5 333333 0 7 000 0 33 0 55 0 000000000000000000000000000000000000000000000000000000000000000000000 00 0 0 5 5 0 5 5 0 00 00 0 0 0 55 0 0 0 55 5 0 5 0 0 5 5 00 00 7777777 0 0 0 2222 0 0 7 33 5 0 3 3 00000 5 0 0 5 0 000 0000 5 00000 777777 7 0 3 33 7777777777777777777777777777 2 0 2 44 0 0 0 6 444 6 000000 8 8 6 0 0000 8 88 00000 0 33 3 0 777777777 0 0 5 555555555555555555555555 00000 0 0 0 5 88 000000000000000000000000000000 7 0
consensus : NNNTTTCGCTGCCAGCG-TTTCCGACGT-TAAATTTC--CAA-GTT-G-CC-AAAA-TT--GCA-AACGTCA-NA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCAGCGA-GACCCTTGTTTC--A-GTCTTTAAAAGTAA-----CACG-TGTATGAAGTT-AAATGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCACTTTT-CTATACTGTATACCNATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC-T-GTCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGA------TTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTCTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAA--TTGGGTTACGAGTAATCTCCCGGNGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAATTTT--AATC-AGATTAAGCTCG-CG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTT----GTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGAN-----AAGTTTTTTCTCCAGGAGA-ACTC----GTACCCTG--TT-----TTATA-GATGAAAATTGATAA-TAGATTC-TTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC-NAATTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAA-ACGA---AG-TTTTCTNCAGGAGAACTCGTACCCT
Reference ( family-3926 ) : NNNTTTCGCTGCCAACG-TTTCCGANGTGTAAATTTC--CAA-GTT-G-CC-AAAN-TT--GCA-AACGTCA-TA--A--AATTTTACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTNTTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCCTANNACAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTGG-AGCGTGTACAC-TTGTACCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTACGGG-ATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATGATG-TTATACCATTTTTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGNNATGACCCTTGTTCCTTATGNCTTTAAAAGTAAAC---CACA-TGTATGAAGTTAAAATGTCACAGGGCA-TGAAAAATCATACAAATTTCACTTTTTCTATACTGTACACCCATCTATCNGTGATNGCAAAACTCTGTCCTGCTCAAAAATGTTTTAATAATTAGTCTCATGGTCCATTGCACTCCTCGCAACANGCGCTGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCTCCTGGAGAAAA-G--CCGTCAATTNTAATCAATAGAATTCTGG---TACGAGTTCTCCTGG-AGAAAACTTTG---TCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGAGAAAAATTTTTTTTTCTGTCAGTTTATTAAAGTTACA----T---AGAAATGTTGNNTATG--AGTTCTGANAAAGGAGAAAAACT--TTCTTTGTC-AAT-TCTAT-CATATAAATN-TGGGT-AC---GAGTTCTCCTGGAGAGAAAACAAAACTTT-TCGTTTTC---TCA-TAAAAA--TTGGG-TACGAGT--TTTCCTGGAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACTTGCAA-TTGTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATT-AGC-TAAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAAATNNAGATTAAGCTCG-CG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTC-CAGAAATAT-GATA-AAATGA-NTTTTTTTCTTTTAGGAGAACTCGTA-CCCAGATTTCTATTGATAATTTTTTCCCAGGA-AAACTCGTACCCCAGAATTTTATTTGATAAAAT-TG-ACAGTTTTTT----CTCCAGGAGAACTCGTACC-CA-ATATCTTTNTGACA-GA--AATGA--C-------AAAGTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATT-GATAAAATTGAN-----AAGTTTTTTCTCCAGGAGA-ACTC----GTACCCTA--TT-----TTNTA-GATAAAAATTGANAA-CANNTTT-TTCTCCAGAACTC-GT-ACCCA-TATTTTATTT--ATAAATTG---AC-NAATTTTTTCTCCAG-GAGAACTC--GTACCCNGATTTTTATATGATAGAA-ATGACAAAGTTTTTCTCCAGGAGAACTCGTANCCT
gi|1 : TTTCGCTGC-AGCG-TTTCTGAC---TAATTTTCACCAA--TT-G-CC-AAAT-TT--GCA-AGCGTCA-TA--A--AATTTGACGTAAGAACAAT-TGTTTATGACGTTT-GCC-TTGTCT---CAAA--GTTTTTTTCCATGTTT--TGA-C-GTACAGCGACCATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATT-TGTATTTTAATT----CA--GATTGGGAATGTTTGTACCGTGTACAGAGTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTA--AGATATATATCTTTCTATAAGATTATGTTGAATTTTTTTTTACACAGTATTCTTCAAA-AACATTTAAATAATCATTCACTTGCACGGTAAGCAACT--TTTGTTTATGT--GATCAGA---GAAC-AAACTTTACG----AAAACCTCAC--ATGAAAATTA-ACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGACTCACTTCTTGTTTCTGCAAG-GATCCAATAGCGTTTAC--GTTCGAGATAAAAAGTTATAATGAACCGACACATCGG-CTAATTTTAGTTGCAGA-CC-CCCTTCCCAGTTCTGT-AGCT-AATCACCATTG----TAAAAACGT-TTCACATCGAAATGAATACGTAGTAGC-TATATGC-GCTA-GACCCTTGTTTC--A-GTCTTTAAAAGTAAACGTTTACGGTGTATGAAGTTAAAATGT-ATAGGGCAGTGAAAAATCA-ACAA--TTTACTTTT-CTATAATGTATACCGGATTCTCAG-GATTACAAAACTC-GTCCTGCTCGAAAATGTTTTAATAATTAGTCTCCTTGTCCATTTCACTCCTCGCAACAAACG-TGCCTTTTTTCCCTACACTGGAAGTG-----------AAGTTCTCCCGGAGA--------CGTCAATTGTAATCAATAGAATTCTGG---TGCGAGTTCTCCTGG--GAAAACTTTG---TCAATTTTTATCAA-TAAAATCTGGGTACGGGAGTTCTGGA------TTTTTTTTTCTGTCAGTTTATTAAAGTTACAAATGT---AGAAATGTTGGGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAAT-TCTAT-CGTATAAATGGTGGGT-AC---GAGTTCTACTGGAGAGAAAACAAAACTTT-TCGTTTTC---TCA-TAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGA--TGTAATTTGTGGTTTTG-TTTGGCAATAATTACAATACTGTGAGAACATCGATCTCAATAAAACAACAAT-TTCGATTCTATAACAA--TCGATGT-ATACGATATATATAATTTTGTAGGTAAAGATAATTAAGCTTAAAAT-TATCA-GTCAAGATTTTATCGAAA-TTTTATGATAAATTTT---ATCAAGATTAAGCTCG-TG-TCATAAATTTTTGATTCCAGCATGACACGGAGTGTTTTTCTCACAAGAATATGGATA-GAATGA-ACTTTTTTCTTTTA-GAGAACTCATACCCCAGATTTCTATTGATAATTTTCTCACAGGATGAACTCGTACCTCAGAATTTTATTTAATGAAAT-TG-ACAGTTCCTT----GTCCAGGAGAACTCGTACCTCAGATATCTTCATGGCA-GA--AATGA--CTAAAAAAAAAATTT-----T-------CAGGAGAACGTCGTATACCGCA-GATTTTATT-GATAAAACGGAA-----AAGTTTTTTATCCAGGAGAGACTC----GT-CCCTG--TT-----TTATA-GATGATAATTGATAG-TAGA----TTCTCCAGAATTT-GTAACACAGTATTTTATTT--ATAAATTG---AC-CAATTTTTTCTCCAGCGAGAACTT--GTACCCTGATTTTTATATAATAAAA-CTGACAAAGATTTTCTTCAGGAGAACTCGTACCCT
gi|10 : accATCA---AAATTTCACTTTT-CTATACTGTATACCCATCT-TTTG-GATAGCAAAACT-TGTCCTATTCAAAAATGTTTTAAT-------------GTCCATT--ACTCCTCGCAACACGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGgata
gi|11 : TTTATGATAAATTTT--AATC-AGATTAA-CTCGGTG-TCA-AAA-TTTTAATTCCAGCATGACACG----GTTTTTTTTACAGAAAAAT-CATAGAAATGA-CTTTTTTTCTTTTAGGAGAAC
gi|12 : -TTTCCGACGT--AGATTTC---AT-ATT-G-CC-AAATATT--GGACAACGTCAATC--A--ATTTTGACCTA-GAT--TT-TGAT--TGCCGTTT-GCCATTG-CT---CAACCAGTTAGTTTT-ATGTT
gi|13 : cG-TCA-AAA-TTTTGATTCCAGCATGACACG----TTTTTTCTC-CAGAAATAT-GATATAAATGACATTTTTTTCTTTTAGGAAAACTCATA-CCCAGATTTCTATTag
gi|14 : tTATATGCAGCA--GACCCTTGTTCC--A-GTTTTTAAAAATAA-------CA-TGTATGAAGTT-AAATGTCATAGGt
gi|15 : C---GAGTTTTACTGGAGAGAAAACACAACTTTCTCGTTTca
gi|16 : TTTTATCAA-TAAAATCTGGGTACG--AGTT
gi|2 : gacaTTTCGCTGCCAGCGCTTTCCGACGT--AAATTTT--CAA-ATTTG-CCCAGAA-TT--GCA-A-CGTCA--A--A--AATTTGACGTAAGAA--ATCTGT--ATGACGTTTAGCC-TTC-CGGGACAAC--GTTATTTT-CATGTTTGCTGAACAGTACAG-GCACATGCGCTCTTTTCCTC-TGCGGCTGTGCGCTT-TAATAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTGG-AGCGTGTACAC-TTGTACCAAAtt
gi|2 : TACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTACGGG-ATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATGATG-TTATACCATTTTTACACatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGCGATGA-CCTTGTTTCTTATGGCTTTAAAAGTAA-----CAC--TGT-TGAAGTT-AAATGT--CAAGGCA-TGAAAAATCATACAAATTT-ACTTTTTCTATACT-TACA-CTATTTATCAGTGATTACAAAACTCTGTCCTGCTC-AAAATGTTTTAATAATTAGTCTCATGATCCATTGCACTCCTCGCAACAAGCGCTGCCTTTT---CCTACACTGGAAGTGAAGCTTCTACCAAGTTCCCCCGGAGAAAATGTTTCGTCAATTTTAATCAA-AGAA-ACTGGGTTTCTGAGTTCTCCTGGAAAAAAACTTTGTTTTC-ATTTTTATCAATTAAAAT-TGGGTACG--AGTTCcagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|3 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaAAGAGAACTCATG-CCC---------TT-----TTTTTTCCCAGGA-AAACTCGTACTTC-GATTTCTATTTGA-ATAATGTGCAAAGTTTTTTTTTTCTCCGGAAGAACTCATATC-CA-A-ATGTCTATGACA-GA--AATTA--C-------AAAGTTT-----TTC---TCCAGGAGAAC-T---G-ATC-CA-GATTT-ATCAGATAAAGTTAAATGACCAAGTTTTT-CACCATGAGA-ACTCCTTAGTGACCTA--TTAATAATTTTATAATAAAAATTGACAAACAGATTTCTTCTCCAAAACTCAGT-ACC-A-GAT---ATTG--ATG---TGGT-AC-AA--TCTTGCTCCAG-GAGAAGCT--GCACTCT-ATTTTT
gi|4 : aactcgtacccTTAGACTTGCAA-TTGTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATT-AGC-TAAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTT-AATACAGATTAAG---G-CGATCA-AAA-TTTTGATTCCAGCATGGCACG----GTTTTTCTC-CAGAAATAT-ctggatacgag
gi|5 : T-----TA----TCCAGGACAAC-TCGTA--CC-CA-GAATTTATT-GATAAAATTGNN-----NNNNNNNNNNNNNNNNNNN-TTTT----CTACCCTGATTT-----TTATA--AT-AAAATTTATAA-TGATTTC-TTCTGGAGAACTC-GT-ACCCA-TATTTCTTTTTGGTAAAATG---ACTTAAGTTTTTCTTCAG-GAGAACTCATGTTCCAAGA----TAT-TGTCGGGT-ACGA-------TTTCTCCAGGAGAACTCGTACCCT
gi|5 : AGAACTC-GT-ACCCA-GA------------AAATAGGGTAC-GAGTT----CTCCTG-GAGAAATC--GTACCC-GA---CAATATCTTGGAACATG----AGTTCTCCTGAAGAAAAACTattttctgggtacgagttctc
gi|5 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaGAGAAC-TCGTA--CC-CA-GA----A---AATAGGGT--AC-----GAGTT----CTCCTGGAGA-AATC----GTACCCc
gi|5 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaagtttttcttcaggagaactcatgttccaagatattgtcAAAA--TAGGG-TACGAGT--TCTCCTGGAGAAA
gi|6 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaagtttttcttcaggagaactcatgttccaagatattgtcgggtacgaTTTTTTTTCTGTCAGTTTATAAAAGT-ACA----TGGGAGAAATGTAGCGTATG--AATTCTGAAAAAGGAAAAAAACT--CT-TTTGTC-AATGTCTATGTATTTAAA-G-TGGTTTACTGTGAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTTATTAAAAA--TTctgggtacgagttctc
gi|7 : gaTTTCGCTGCCAACG-TTTT-GAA-TGTAAATTTC--CAA-GTT-G-CC-AAAA-TT--GCA-A-CGTCA-AA--ATTAATTTTACGTAAGAA--AT-TGT--ATGACGTTT-GC-------T---CAAC--GTTATTTTTCATGTTTA-TGA-C-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTG-GCCTAATACAAGA
gi|8 : TTTGCTGCCAACG-TTTTGAATGTA-AAATTTC--CAAAGTT-GGCC-AAAA-TTTCGCA-AACGTCA-AATTA--AATTTTACGTAAGAA---T-TGT--ATGACGT---G---TTG-CT---CAA---GTATTTTTTCATGTTTA-TGGGC-GTACAG-GCACATGT--TCTTTCTCTCTTGCG-CTca
gi|9 : cTTTTT----GTCTAGGAAAACTCGTACC-----TATTTTTGTAACATGATGAATGAGAT-------AAACTTTATTGTTTAGGGTTTAGGAAAAC-TTGTA--CC-CATAATTTTAT--GACAGAAATGAC-----A-GTTTTTTCTCCAGGAGA-ACTT----GTAACCTA--TT-----Ttgg
Alignments
lowQualScore : 22 111 11 11 1 1111111 111 222 11111111111 111 11 1 1 1 11 1 1 1 1 1 2222 11 1 111 1 11 1 1 1 1 1 11 11 2222 1 2222 11 1 1 1 11 1 1 11 1 1 11 1 1 1 1 2222 11 222 1 1 111 2222 5555555555 1 22 1 1 1 1 11 1 1 11 1 33333 33 1 222 66666666666 33333333 1 11 222 11 22222 1 11 1 33333333 11 222 1 1 1 11 1 222 222 1 22 11 1 1 1 1 11 1 1 1 1 1 1 11 1 1 1 1 111 22222 1 1 1 2222 1 1 2 1 1 11111111111 1 1 1 1 1 4444 333333 1 11 6666666666666666666666666666 111 22 1 1 22 222222 1 2222 4444444444 2 1 1 22 1 1 555555555555555555555555555555 1 11 2222222 4444444444
lowQualScore : 2 8 3 11 444 44 8 8 8 8 11 8 3 8 7777777 0 777 8 999 0 8 77777777777 666 1 3 77 9 0 0 33 0 0 6 3 5 5 4444 88 1 5 1 777 5 77 5 5 1 1 5 1 1 5 1 1 22 1 1 22 5 88 1 88 2222 1 5 1 1 4444 2 88 1 5 5 5 1 88 1 5 5 1 2 77 1 5 5 66 333 5 5 1 5 5 2222 66 000 1 1 5 5 7 999 6 2222 4444444444 7 3 00 5 3 6 7 2 3 6 6 44 3 3 44 2 7 44444 33 3 333 33333333333 66666666 1 5 66 111 1 88 77777 3 6 88 1 5 55555555 1 1 88 888 5 5 5 1 88 1 5 333 6 111 5 77 6 6 6 1 88 5 1 5 1 5 2 1 5 22 88 5 5 5 22 5 5 5 66 5 5 1 1 1 1 5 3 7 666 44444 0 0 0 0 1111 5 0 6 3 6 3 7 66666666666 1 5 5 1 5 1 5 5 1 2222 0 888888 1 3 88 1111111111111111111111111111 0 0 333 55 0 0 9 00 1 666666 5 5 0 1111 99 4444444444 3 2 3 00 0 0 2 777777777777777777777777777777 0 0 1 33 5555555 7 111 1111111111 1
lowQualScore : . . . .. ... .. . . . . .. . . . ....... . ... . ... . . ........... ... . . .. . . . .. . . . . . . .... .. . . . ... . .. . . . . . . . . . . .. . . .. . .. . .. .... . . . . .... . .. . . . . . .. . . . . . .. . . . .. ... . . . . . .... .. ... . . . . . ... . .... .......... . . .. . . . . . . . . .. . . .. . . ..... .. . ... ........... ........ . . .. ... . .. ..... . . .. . . ........ . . .. ... . . . . .. . . ... . ... . .. . . . . .. . . . . . . . . .. .. . . . .. . . . .. . . . . . . . . . ... ..... . . . . .... . . . . . . . ........... . . . . . . . . . .... . ...... . . .. ............................ . . ... .. . . . .. . ...... . . . .... .. .......... . . . .. . . . .............................. . . . .. ....... . ... .......... .
lowQualScore : 5 0 2 44 222 44 0 0 0 0 00 0 6 0 6666666 8 000 0 222 8 0 44444444444 000 4 8 00 0 0 0 88 0 0 7 3 5 0 0000 55 0 5 0 555 5 55 5 5 0 0 5 0 0 5 0 0 00 0 0 00 0 55 0 55 5555 0 5 0 0 5555 5 00 0 5 5 0 0 00 0 5 5 0 5 55 0 5 5 55 000 5 0 0 5 0 5555 55 555 0 0 0 5 3 333 7 7777 7777777777 3 3 77 0 3 7 3 0 3 7 7 33 3 3 00 0 3 00000 33 3 333 33333333333 00000000 0 5 55 000 0 55 00000 3 7 33 0 5 00000000 0 0 00 555 0 0 0 0 00 0 5 333 7 000 5 55 0 0 0 0 00 5 0 5 0 5 5 0 0 00 00 0 5 5 00 5 5 5 55 5 0 0 0 0 0 5 3 3 777 00000 7 0 0 0 2222 5 0 7 3 5 3 3 22222222222 0 5 5 0 5 0 0 0 0 5555 7 777777 0 3 33 0000000000000000000000000000 2 2 555 55 0 0 8 55 2 000000 8 8 0 2222 55 2222222222 3 0 3 77 0 0 5 555555555555555555555555555555 8 0 0 88 5555555 3 333 7777777777 0
consensus : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCAGC-A-GACCCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--ACNAA-TTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGAG--TTTTCTNCAGGAGAACTCGTACCCT
Reference ( family-3926 ) : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCAGCGA-GACCCTTGTTTC--A-GTCTTTAAAAGTAA-----CACG-TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTCTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAA--TTGGGTTACGAGTAATCTCCCGGNGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAG----TTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----NAAGTTTTTTCTCCAGGAGA-ACTC----GTACCCT-------G--TTTTATAGATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--ACNAATTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAA---ACGAAG-TTTTCTNCAGGAGAACTCGTACCCT
gi|1 : TTTCGCTGC-AGCG-TTTCTGAC--TAATTTTCACCAA--TT-G-CC-AAA-TTT--GCA-AGCGTC-ATA--A--AATTTGACGTAAGAACAAT-TGTTTATGACGTTT-GCC-TTGTCT---CAAA--GTTTTTTTCCATGTTT--TGA-C-GTACAGCGACCATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATT-TGTATTTTAATT----CA--GATTGGGAATGTTTGTACCGTGTACAGAGTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTA--AGATATATATCTTTCTATAAGATTATGTTGAATTTTTTTTTACACAGTATTCTTCAAA-AACATTTAAATAATCATTCACTTGCACGGTAAGCAACT--TTTGTTTATGT--GATCAGA---GAAC-AAACTTTACG----AAAACCTCAC--ATGAAAATTA-ACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGACTCACTTCTTGTTTCTGCAAG-GATCCAATAGCGTTTAC--GTTCGAGATAAAAAGTTATAATGAACCGACACATCGG-CTAATTTTAGTTGCAGA-CC-CCCTTCCCAGTTCTGT-AGCT-AATCACCATTG----TAAAAACGT-TTCACATCGAAATGAATACGTAGTAGC-TATATGC-GCTA-GACCCTTGTTTC--A-GTCTTTAAAAGTAAACGTTTACGGTGTATGAAGTTAAAATGT-ATAGGGCAGTGAAAAATCA-ACAA--TTTAC-TTTTCTATAATGTATACCGGATTC-TCAG-GATTACAAAACTC-GTCCTGCTCGAAAATGTTTTAATAATTAGTCTCCTTG-TCCATTTCACTCCTCGCAACAAACG-TGCCTTTTTTCCCTACACTGGAAGTG-----------AAGTTCTCCCGGAGA--------CGTCAATTGTAATCAATAGAATTCTGG---TGCGAGTTCTCCTGG--GAAAACTTTGT---CAATTTTTATCAA-TAAAATCTGGGTACGGGAGTTCTGGATTTTTTTTTCTGTCAGTTTATTAAAGTTACAAATGT---AGAAATGTTGGGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAAT-TCTAT-CGTATAAATGGTGGGT-AC---GAGTTCTACTGGAGAGAAAACAAAACTTT-TCGTTTTC---TCAT-AAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGA--TGTAATTTGTGGTTTTG-TTTGGCAATAATTACAATACTGTGAGAACATCGATCTCAATAAAACAACAAT-TTCGATTCTATAACAA--TCGATGT-ATACGATATATATAATTTTGTAGGTAAAGATAATTAAGCTTAAAAT-TATCA-GTCAAGATTTTATCGAAA-TTTTATGATAAA-TTTT-AT-CAAGATTAAGCTC-GTG-TCATAAATTTTTGATTCCAGCATGACACGGAGTGTTTTTCTCACAAGAATATGGATA-GAATGA-ACTTTTTTCTTTTA-GAGAACTCATACCCCAGATTTCTATTGATAATTTTCTCACAGGATGAACTCGTACCTCAGAATTTTATTTAATGAAAT-TG-ACAG----TTCCTTGTCCAGGAGAACTCGTACCTCAGATATCTTCATGGCA-GA--AATGA--CTAAAAAAAAAATTT-----T-------CAGGAGAACGTCGTATACCGCA-GATTTTATT-GATAAAACGGA-----AAAGTTTTTTATCCAGGAGAGACTC----GT-CCCT-------G--TTTTATAGATGATAATTGAT-AGTAGA----TTCTCCAGAATTT-GTAACACAGTATTTTATTT--ATAAATT-G--ACCAATTTTTTCTCCAGCGAGAACTT--GTACCCTGATTTTTATATAATAAAACTGACAAAGATTTTCTTCAGGAGAACTCGTACCCT
gi|10 : accATCA-A--AATTTCAC-TTTTCTATACTGTATACCC-ATCT-TTTG-GATAGCAAAACT-TGTCCTATTCAAAAATGTTTTAAT-------------G-TCCATT--ACTCCTCGCAACACGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGgata
gi|11 : TTTATGATAAA-TTTTAAT-C-AGATTAA-CTCGGTG-TCA-AAA-TTTTAATTCCAGCATGACACG----GTTTTTTTTACAGAAAAAT-CATAGAAATGA-CTTTTTTTCTTTTAGGAGAAC
gi|12 : -TTTCCGACG-TAGATTT---CAT-ATT-G-CC-AAATATT--GGACAACGTCAATC--A--ATTTTGACCT-AGAT--TT-TGAT--TGCCGTTT-GCCATTG-CT---CAACCAGTTAGTTTT-ATGTT
gi|13 : cG-TCA-AAA-TTTTGATTCCAGCATGACACG----TTTTTTCTC-CAGAAATAT-GATATAAATGACATTTTTTTCTTTTAGGAAAACTCATA-CCCAGATTTCTATTag
gi|14 : tTATATGCAGC-A-GACCCTTGTTCC--A-GTTTTTAAAAATAA-----CA---TGTATGAAGTTAAA-TGTCATAGGt
gi|15 : C---GAGTTTTACTGGAGAGAAAACACAACTTTCTCGTTTca
gi|16 : TTTTATCAA-TAAAATCTGGGTACG--AGTT
gi|2 : gacaTTTCGCTGCCAGCGCTTTCCGACGT-AAATTTT--CAA-ATTTG-CCCAGA-ATT--GCA-A-CGTC-A-A--A--AATTTGACGTAAGAA--ATCTGT--ATGACGTTTAGCC-TTC-CGGGACAAC--GTTATTTT-CATGTTTGCTGAACAGTACAG-GCACATGCGCTCTTTTCCTC-TGCGGCTGTGCGCTT-TAATAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTGG-AGCGTGTACAC-TTGTACCAAAtt
gi|2 : TACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTACGGG-ATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATGATG-TTATACCATTTTTACACatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGCGATGA-CCTTGTTTCTTATGGCTTTAAAAGTAA-----CAC--TGT-TGAAGTTAAA-TGT--CAAGGCA-TGAAAAATCATACAAATTT-ACTTTTTCTATACT-TACA-CT-ATTTATCAGTGATTACAAAACTCTGTCCTGCTC-AAAATGTTTTAATAATTAGTCTCA-TGATCCATTGCACTCCTCGCAACAAGCGCTGCCTTTT---CCTACACTGGAAGTGAAGCTTCTACCAAGTTCCCCCGGAGAAAATGTTTCGTCAATTTTAATCAA-AGAA-ACTGGGTTTCTGAGTTCTCCTGGAAAAAAACTTTGTTTTC-ATTTTTATCAATTAAAAT-TGGGTACG--AGTTCcagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|3 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaAAGAGAACTCATG-CCC---TT-----------TTTTTTCCCAGGA-AAACTCGTACTTC-GATTTCTATTTGA-ATAATGTGCAAAGTTTTTTTTTTCTCCGGAAGAACTCATATC-CA-A-ATGTCTATGACA-GA--AATTA--C-------AAAGTTT-----TTC---TCCAGGAGAAC----TG-ATC-CA-GA-TTTATCAGATAAAGTTAAATGACCAAG-TTTTTCACCATGAGA-ACTCCTTAGTGACCTATTAATAA--TTTTATA-ATAAAAATTGACAAACAGATTTCTTCTCCAAAACTCAGT-A-CCA-GAT---ATTG--ATG---TGGT-ACAA--TCTTGCTCCAG-GAGAAGCT--GCACTCT-ATTTTT
gi|4 : aactcgtacccTTAGACTTGCAATT-GTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATT-AGC-TAAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAATAC-AGATTAAG----GCGATCA-AAA-TTTTGATTCCAGCATGGCACG----GTTTTTCTC-CAGAAATAT-ctggatacgag
gi|5 : T-----TA----TCCAGGACAAC-TCGTA--CC-CA-GAATTTATT-GATAAAATTGN-----NNNNNNNNNNNNNNNNNNNN-TTTT----CTACCCT-------GATTTTTATA-AT-AAAATTTAT-AATGAT-TTCTTCTGGAGAACTC-GT-ACCCA-TATTTCTTTTTGGTAAAATGA--CTTAAGTTTTTCTTCAG-GAGAACTCATGTTCCAAGA----TAT-TGTCGGGT---ACGA----TTTCTCCAGGAGAACTCGTACCCT
gi|5 : AGAACTC-GT-ACCCA-GA------------AAATAGGGTACGAG----TTCTCCTG-GAGAAATC--GTACCC-GA---CAATATCTTGGAAC--ATGAGT-TCTCCTGAAGAAAAACTattttctgggtacgagttctc
gi|6 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaTTTTTTTTCTGTCAGTTTATAAAAGT-ACA----TGGGAGAAATGTAGCGTATG--AATTCTGAAAAAGGAAAAAAACTCT---TTTGTC-AATGTCTATGTATTTAAA--GTGGTTTACTGTGAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTTATTAAAAA--TTc
gi|7 : gaTTTCGCTGCCAACG-TTTTGAATGT-AAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-A-CGTC-AAA--ATTAATTTTACGTAAGAA--AT-TGT--ATGACGTTT-GC-------T---CAAC--GTTATTTTTCATGTTTA-TGA-C-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTG-GCCTAATACAAGA
gi|8 : TTTGCTGCCAACG-TTTTGAATGTAAAATTTC--CAAAGTT-GGCC-AAA-ATTTCGCA-AACGTC-AAATTA--AATTTTACGTAAGAA---T-TGT--ATGACGT---G---TTG-CT---CAA---GTATTTTTTCATGTTTA-TGGGC-GTACAG-GCACATGT--TCTTTCTCTCTTGCG-CTca
gi|9 : cTTTTTGTCTAGGAAAACTCGTACC-----TATTTTTGTAACATGATGAATGAGAT-------AAACTTTATTGTTTAGGGTTTAGGAAAAC-TTGTA--CC-CATAATTTTAT--GACAGAAATGA-----CA-GTTTTTTCTCCAGGAGA-ACTT----GTAACCT-------A--TTTtgg
Alignments
lowQualScore : 22 111 11 11 1 1111111 111 222 11111111111 111 11 1 1 1 11 1 1 1 1 1 2222 11 1 111 1 11 1 1 1 1 1 11 11 2222 1 2222 11 1 1 1 11 1 1 11 1 1 11 1 1 1 1 2222 11 222 1 1 11 2222 4444444444 1 22 1 1 1 1 11 1 1 11 1 33333 33 1 222 66666666666 33333333 1 11 222 11 22222 1 11 1 33333333 11 222 1 1 1 11 1 222 222 1 11 1 1 1 1 11 1 1 1 1 1 1 11 1 1 1 1 111 22222 1 1 1 2222 1 1 2 1 1 11111111111 1 1 1 1 1 2222 333333 1 11 6666666666666666666666666666 111 22 1 1 22 22222 1 2222 4444444444 1 1 1 22 1 1 66666666666666666666666666666 1 1 11 22222222 2222 333333
lowQualScore : 2 8 3 11 444 44 8 8 8 8 11 8 3 8 7777777 0 777 8 999 0 8 77777777777 666 1 3 77 9 0 0 33 0 0 6 3 5 5 4444 88 1 5 1 777 5 77 5 5 1 1 5 1 1 5 1 1 22 1 1 22 5 88 1 88 2222 1 5 1 1 4444 2 88 1 5 5 5 1 88 1 5 5 1 2 77 1 5 5 66 333 5 5 1 5 5 2222 66 000 1 1 5 5 7 88 2222 4444444444 7 3 00 5 3 6 7 2 3 6 6 44 3 3 44 2 7 44444 33 3 333 33333333333 66666666 1 5 66 111 1 88 77777 3 6 88 1 5 55555555 1 1 88 111 5 5 5 1 88 1 5 333 6 111 5 88 5 1 5 1 5 2 1 5 22 88 5 5 5 22 5 5 5 66 5 5 1 1 1 1 5 3 7 666 44444 0 0 0 0 1111 5 0 6 3 6 3 7 66666666666 1 5 5 1 5 1 5 5 1 4444 0 888888 1 3 88 1111111111111111111111111111 0 0 333 55 0 0 9 00 1 55555 5 5 0 1111 88 4444444444 3 2 3 00 0 0 2 66666666666666666666666666666 0 3 3 0 1 33 33333333 7 111 1111 333333 1
lowQualScore : . . . .. ... .. . . . . .. . . . ....... . ... . ... . . ........... ... . . .. . . . .. . . . . . . .... .. . . . ... . .. . . . . . . . . . . .. . . .. . .. . .. .... . . . . .... . .. . . . . . .. . . . . . .. . . . .. ... . . . . . .... .. ... . . . . . .. .... .......... . . .. . . . . . . . . .. . . .. . . ..... .. . ... ........... ........ . . .. ... . .. ..... . . .. . . ........ . . .. ... . . . . .. . . ... . ... . .. . . . . . . . . .. .. . . . .. . . . .. . . . . . . . . . ... ..... . . . . .... . . . . . . . ........... . . . . . . . . . .... . ...... . . .. ............................ . . ... .. . . . .. . ..... . . . .... .. .......... . . . .. . . . ............................. . . . . . .. ........ . ... .... ...... .
lowQualScore : 5 0 2 44 222 44 0 0 0 0 00 0 6 0 6666666 8 000 0 222 8 0 44444444444 000 4 8 00 0 0 0 88 0 0 7 3 5 0 0000 55 0 5 0 555 5 55 5 5 0 0 5 0 0 5 0 0 00 0 0 00 0 55 0 55 5555 0 5 0 0 5555 5 00 0 5 5 0 0 00 0 5 5 0 5 55 0 5 5 55 000 5 0 0 5 0 5555 55 555 0 0 0 5 3 33 7777 7777777777 3 3 77 0 3 7 3 0 3 7 7 33 3 3 00 0 3 00000 33 3 333 33333333333 00000000 0 5 55 000 0 55 00000 3 7 33 0 5 00000000 0 0 00 000 0 0 0 0 00 0 5 333 7 000 5 00 5 0 5 0 5 5 0 0 00 00 0 5 5 00 5 5 5 55 5 0 0 0 0 0 5 3 3 777 00000 7 0 0 0 2222 5 0 7 3 5 3 3 22222222222 0 5 5 0 5 0 0 0 0 5555 7 777777 0 3 33 0000000000000000000000000000 2 2 555 55 0 0 8 55 2 00000 8 8 0 2222 00 2222222222 3 0 3 77 0 0 5 22222222222222222222222222222 0 2 0 0 0 88 00000000 3 333 0000 777777 0
consensus : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--ACN--AG-TTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
Reference ( family-3926 ) : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCAGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--ACN--AA-TTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
gi|1 : TTTCGCTGC-AGCG-TTTCTGAC--TAATTTTCACCAA--TT-G-CC-AAA-TTT--GCA-AGCGTC-ATA--A--AATTTGACGTAAGAACAAT-TGTTTATGACGTTT-GCC-TTGTCT---CAAA--GTTTTTTTCCATGTTT--TGA-C-GTACAGCGACCATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATT-TGTATTTTAATT----CA--GATTGGGAATGTTTGTACCGTGTACAGAGTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTA--AGATATATATCTTTCTATAAGATTATGTTGAATTTTTTTTTACACAGTATTCTTCAAA-AACATTTAAATAATCATTCACTTGCACGGTAAGCAACT--TTTGTTTATGT--GATCAGA---GAAC-AAACTTTACG----AAAACCTCAC--ATGAAAATTA-ACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGACTCACTTCTTGTTTCTGCAAG-GATCCAATAGCGTTTAC--GTTCGAGATAAAAAGTTATAATGAACCGACACATCGG-CTAATTTTAGTTGCAGA-CC-CCCTTCCCAGTTCTGT-AGCT-AATCACCATTG----TAAAAACGT-TTCACATCGAAATGAATACGTAGTAGC-TATATGCGCTAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAAACGTTTACGGTGTATGAAGTTAAAATGT-ATAGGGCAGTGAAAAATCA-ACAA--TTTAC-TTTTCTATAATGTATACCGGATTC-TCAG-GATTACAAAACTC-GTCCTGCTCGAAAATGTTTTAATAATTAGTCTCCTTG-TCCATTTCACTCCTCGCAACAAACG-TGCCTTTTTTCCCTACACTGGAAGTG-----------AAGTTCTCCCGGAGA--------CGTCAATTGTAATCAATAGAATTCTGG---TGCGAGTTCTCCTGG--GAAAACTTTGT---CAATTTTTATCAA-TAAAATCTGGGTACGGGAGTTCTGGATTTTTTTTTCTGTCAGTTTATTAAAGTTACAAATGT---AGAAATGTTGGGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAAT-TCTAT-CGTATAAATGGTGGGT-AC---GAGTTCTACTGGAGAGAAAACAAAACTTT-TCGTTTTC---TCAT-AAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGA--TGTAATTTGTGGTTTTG-TTTGGCAATAATTACAATACTGTGAGAACATCGATCTCAATAAAACAACAAT-TTCGATTCTATAACAA--TCGATGT-ATACGATATATATAATTTTGTAGGTAAAGATAATTAAGCTTAAAAT-TATCA-GTCAAGATTTTATCGAAA-TTTTATGATAAA-TTTT-AT-CAAGATTAAGCTC-GTG-TCATAAATTTTTGATTCCAGCATGACACGGAGTGTTTTTCTCACAAGAATATGGATA-GAATGA-ACTTTTTTCTTTTA-GAGAACTCATACCCCAGATTTCTATTGATAATTTTCTCACAGGATGAACTCGTACCTCAGAATTTTATTTAATGAAAT-TG-ACAG----TTCCTTGTCCAGGAGAACTCGTACCTCAGATATCTTCATGGCA-GA--AATGA--CTAAAAAAAAAATTT-----T-------CAGGAGAACGTCGTATACCGCA-GATTTTATT-GATAAAACGGA-----AAAGTTTTTTATCCAGGAGAGACTC----GT-CCCT-------G--TTTTATAGATGATAATTGAT-AGTAGA----TTCTCCAGAATTT-GTAACACAGTATTTTATTT--ATAAATT-G--ACC--AATTTTTTCTCCAGCGAGAACTT--GTACCCTGATTTTTATATAATAAAACTGACAAAGATT-TTCTTCAGGAGAACTCGTACCCT
gi|10 : accATCA-A--AATTTCAC-TTTTCTATACTGTATACCC-ATCT-TTTG-GATAGCAAAACT-TGTCCTATTCAAAAATGTTTTAAT-------------G-TCCATT--ACTCCTCGCAACACGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGgata
gi|11 : TTTATGATAAA-TTTTAAT-C-AGATTAA-CTCGGTG-TCA-AAA-TTTTAATTCCAGCATGACACG----GTTTTTTTTACAGAAAAAT-CATAGAAATGA-CTTTTTTTCTTTTAGGAGAAC
gi|12 : -TTTCCGACG-TAGATTT---CAT-ATT-G-CC-AAATATT--GGACAACGTCAATC--A--ATTTTGACCT-AGAT--TT-TGAT--TGCCGTTT-GCCATTG-CT---CAACCAGTTAGTTTT-ATGTT
gi|13 : cG-TCA-AAA-TTTTGATTCCAGCATGACACG----TTTTTTCTC-CAGAAATAT-GATATAAATGACATTTTTTTCTTTTAGGAAAACTCATA-CCCAGATTTCTATTag
gi|14 : tTATATGCAGCAGAC--CCTTGTTCC--A-GTTTTTAAAAATAA-----CA---TGTATGAAGTTAAA-TGTCATAGGt
gi|15 : C---GAGTTTTACTGGAGAGAAAACACAACTTTCTCGTTTca
gi|16 : TTTTATCAA-TAAAATCTGGGTACG--AGTT
gi|2 : gacaTTTCGCTGCCAGCGCTTTCCGACGT-AAATTTT--CAA-ATTTG-CCCAGA-ATT--GCA-A-CGTC-A-A--A--AATTTGACGTAAGAA--ATCTGT--ATGACGTTTAGCC-TTC-CGGGACAAC--GTTATTTT-CATGTTTGCTGAACAGTACAG-GCACATGCGCTCTTTTCCTC-TGCGGCTGTGCGCTT-TAATAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTGG-AGCGTGTACAC-TTGTACCAAAtt
gi|2 : TACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTACGGG-ATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATGATG-TTATACCATTTTTACACatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGC-GATGACCTTGTTTCTTATGGCTTTAAAAGTAA-----CAC--TGT-TGAAGTTAAA-TGT--CAAGGCA-TGAAAAATCATACAAATTT-ACTTTTTCTATACT-TACA-CT-ATTTATCAGTGATTACAAAACTCTGTCCTGCTC-AAAATGTTTTAATAATTAGTCTCA-TGATCCATTGCACTCCTCGCAACAAGCGCTGCCTTTT---CCTACACTGGAAGTGAAGCTTCTACCAAGTTCCCCCGGAGAAAATGTTTCGTCAATTTTAATCAA-AGAA-ACTGGGTTTCTGAGTTCTCCTGGAAAAAAACTTTGTTTTC-ATTTTTATCAATTAAAAT-TGGGTACG--AGTTCcagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|3 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaAAGAGAACTCATG-CCC---TT-----------TTTTTTCCCAGGA-AAACTCGTACTTC-GATTTCTATTTGA-ATAATGTGCAAAGTTTTTTTTTTCTCCGGAAGAACTCATATC-CA-A-ATGTCTATGACA-GA--AATTA--C-------AAAGTTT-----TTC---TCCAGGAGAAC----TG-ATC-CA-GA-TTTATCAGATAAAGTTAAATGACCAAG-TTTTTCACCATGAGA-ACTCCTTAGTGACCTATTAATAA--TTTTATA-ATAAAAATTGACAAACAGATTTCTTCTCCAAAACTCAGT-A-CCA-GAT---ATTG--ATG---TGGT-AC---AA-TCTTGCTCCAG-GAGAAGCT--GCACTCT-ATTTTT
gi|4 : aactcgtacccTTAGACTTGCAATT-GTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATT-AGC-TAAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAATAC-AGATTAAG----GCGATCA-AAA-TTTTGATTCCAGCATGGCACG----GTTTTTCTC-CAGAAATAT-ctggatacgag
gi|5 : T-----TA----TCCAGGACAAC-TCGTA--CC-CA-GAATTTATT-GATAAAATTGN-----NNNNNNNNNNNNNNNNNNNN-TTTT----CTACCCT-------GATTTTTATA-AT-AAAATTTAT-AATGAT-TTCTTCTGGAGAACTC-GT-ACCCA-TATTTCTTTTTGGTAAAATG---ACTTAAG-TTTTTCTTCAG-GAGAACTCATGTTCCAAGAT----AT-TGTCGGG-T--ACGA----T-TTCTCCAGGAGAACTCGTACCCT
gi|5 : AGAACTC-GT-ACCCA-GA------------AAATAGGGTACG--AG-TT---CTCCTG-GAGAAATC--GTACCC-GA---CAATATCTTGGAAC--ATGA--GTTCTCCTGAAGAAAAACTattttctgggtacgagttctc
gi|6 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaTTTTTTTTCTGTCAGTTTATAAAAGT-ACA----TGGGAGAAATGTAGCGTATG--AATTCTGAAAAAGGAAAAAAACTCTTT---TGTC-AATGTCTATGTATTTAAA--GTGGTTTACTGTGAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTTATTAAAAAc
gi|7 : gaTTTCGCTGCCAACG-TTTTGAATGT-AAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-A-CGTC-AAA--ATTAATTTTACGTAAGAA--AT-TGT--ATGACGTTT-GC-------T---CAAC--GTTATTTTTCATGTTTA-TGA-C-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTG-GCCTAATACAAGAtt
gi|8 : TTTGCTGCCAACG-TTTTGAATGTAAAATTTC--CAAAGTT-GGCC-AAA-ATTTCGCA-AACGTC-AAATTA--AATTTTACGTAAGAA---T-TGT--ATGACGT---G---TTG-CT---CAA---GTATTTTTTCATGTTTA-TGGGC-GTACAG-GCACATGT--TCTTTCTCTCTTGCG-CTca
gi|9 : cTTTTTGTCTAGGAAAACTCGTACC-----TATTTTTGTAACATGATGAATGAGAT-------AAACTTTATTGTTTAGGGTTTAGGAAAAC-TTGTA--CC-CATAATTTTAT--GACAGAAATGA-----CA-GTTTTTTCTCCAGGAGA-ACTT----GTAACCT-------A--TTTtgg
Alignments
lowQualScore : 22 111 11 11 1 1111111 111 222 11111111111 111 11 1 1 1 11 1 1 1 1 1 2222 11 1 111 1 11 1 1 1 1 1 11 11 2222 1 2222 11 1 1 1 11 1 1 11 1 1 11 1 1 1 1 2222 11 222 1 1 11 2222 4444444444 1 22 1 1 1 1 11 1 1 11 1 33333 33 1 222 66666666666 33333333 1 11 222 11 22222 1 11 1 33333333 11 222 1 1 1 11 1 222 222 1 11 1 1 1 1 11 1 1 1 1 1 1 11 1 1 1 1 111 22222 1 1 1 2222 1 1 2 1 1 11111111111 1 1 1 1 1 2222 333333 1 11 6666666666666666666666666666 111 22 1 1 22 22222 1 2222 4444444444 1 1 1 22 1 1 55555555555555555555555555555 1 11 22222222 2222 333333
lowQualScore : 2 8 3 11 444 44 8 8 8 8 11 8 3 8 7777777 0 777 8 999 0 8 77777777777 666 1 3 77 9 0 0 33 0 0 6 3 5 5 4444 88 1 5 1 777 5 77 5 5 1 1 5 1 1 5 1 1 22 1 1 22 5 88 1 88 2222 1 5 1 1 4444 2 88 1 5 5 5 1 88 1 5 5 1 2 77 1 5 5 66 333 5 5 1 5 5 2222 66 000 1 1 5 5 0 7 88 2222 4444444444 7 3 00 5 3 6 7 2 3 6 6 44 3 3 44 2 7 44444 33 3 333 33333333333 66666666 1 5 66 111 1 88 77777 3 6 88 1 5 55555555 1 1 88 111 5 5 5 1 88 1 5 333 6 111 5 88 5 1 5 1 5 2 1 5 22 88 5 5 5 22 5 5 5 66 5 5 1 1 1 1 5 3 7 666 44444 0 0 0 0 1111 5 0 6 3 6 3 7 66666666666 1 5 5 1 5 1 5 5 1 4444 0 888888 1 3 88 1111111111111111111111111111 0 0 333 55 0 0 9 00 1 55555 5 5 0 1111 88 4444444444 3 2 3 00 0 0 2 44444444444444444444444444444 8 3 3 0 1 33 33333333 7 111 1111 333333 1
lowQualScore : . . . .. ... .. . . . . .. . . . ....... . ... . ... . . ........... ... . . .. . . . .. . . . . . . .... .. . . . ... . .. . . . . . . . . . . .. . . .. . .. . .. .... . . . . .... . .. . . . . . .. . . . . . .. . . . .. ... . . . . . .... .. ... . . . . . . .. .... .......... . . .. . . . . . . . . .. . . .. . . ..... .. . ... ........... ........ . . .. ... . .. ..... . . .. . . ........ . . .. ... . . . . .. . . ... . ... . .. . . . . . . . . .. .. . . . .. . . . .. . . . . . . . . . ... ..... . . . . .... . . . . . . . ........... . . . . . . . . . .... . ...... . . .. ............................ . . ... .. . . . .. . ..... . . . .... .. .......... . . . .. . . . ............................. . . . . . .. ........ . ... .... ...... .
lowQualScore : 5 0 2 44 222 44 0 0 0 0 00 0 6 0 6666666 8 000 0 222 8 0 44444444444 000 4 8 00 0 0 0 88 0 0 7 3 5 0 0000 55 0 5 0 555 5 55 5 5 0 0 5 0 0 5 0 0 00 0 0 00 0 55 0 55 5555 0 5 0 0 5555 5 00 0 5 5 0 0 00 0 5 5 0 5 55 0 5 5 55 000 5 0 0 5 0 5555 55 555 0 0 0 5 7 3 33 7777 7777777777 3 3 77 0 3 7 3 0 3 7 7 33 3 3 00 0 3 00000 33 3 333 33333333333 00000000 0 5 55 000 0 55 00000 3 7 33 0 5 00000000 0 0 00 000 0 0 0 0 00 0 5 333 7 000 5 00 5 0 5 0 5 5 0 0 00 00 0 5 5 00 5 5 5 55 5 0 0 0 0 0 5 3 3 777 00000 7 0 0 0 2222 5 0 7 3 5 3 3 22222222222 0 5 5 0 5 0 0 0 0 5555 7 777777 0 3 33 0000000000000000000000000000 2 2 555 55 0 0 8 55 2 00000 8 8 0 2222 00 2222222222 3 0 3 77 0 0 5 00000000000000000000000000000 8 2 0 0 0 88 00000000 3 333 0000 777777 0
consensus : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--ACG--AGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
Reference ( family-3926 ) : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--ACN--AGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
gi|1 : TTTCGCTGC-AGCG-TTTCTGAC--TAATTTTCACCAA--TT-G-CC-AAA-TTT--GCA-AGCGTC-ATA--A--AATTTGACGTAAGAACAAT-TGTTTATGACGTTT-GCC-TTGTCT---CAAA--GTTTTTTTCCATGTTT--TGA-C-GTACAGCGACCATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATT-TGTATTTTAATT----CA--GATTGGGAATGTTTGTACCGTGTACAGAGTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTA--AGATATATATCTTTCTATAAGATTATGTTGAATTTTTTTTTACACAGTATTCTTCAAA-AACATTTAAATAATCATTCACTTGCACGGTAAGCAACT--TTTGTTTATGT--GATCAGA---GAAC-AAACTTTACG----AAAACCTCAC--ATGAAAATTA-ACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGACTCACTTCTTGTTTCTGCAAG-GATCCAATAGCGTTTAC--GTTCGAGATAAAAAGTTATAATGAACCGACACATCGG-CTAATTTTAGTTGCAGA-CC-CCCTTCCCAGTTCTGT-AGCT-AATCACCATTG----TAAAAACGT-TTCACATCGAAATGAATACGTAGTAGC-TATATGCGCTAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAAACGTTTACGGTGTATGAAGTTAAAATGT-ATAGGGCAGTGAAAAATCA-ACAA--TTTAC-TTTTCTATAATGTATACCGGATTC-TCAG-GATTACAAAACTC-GTCCTGCTCGAAAATGTTTTAATAATTAGTCTCCTTG-TCCATTTCACTCCTCGCAACAAACG-TGCCTTTTTTCCCTACACTGGAAGTG-----------AAGTTCTCCCGGAGA--------CGTCAATTGTAATCAATAGAATTCTGG---TGCGAGTTCTCCTGG--GAAAACTTTGT---CAATTTTTATCAA-TAAAATCTGGGTACGGGAGTTCTGGATTTTTTTTTCTGTCAGTTTATTAAAGTTACAAATGT---AGAAATGTTGGGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAAT-TCTAT-CGTATAAATGGTGGGT-AC---GAGTTCTACTGGAGAGAAAACAAAACTTT-TCGTTTTC---TCAT-AAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGA--TGTAATTTGTGGTTTTG-TTTGGCAATAATTACAATACTGTGAGAACATCGATCTCAATAAAACAACAAT-TTCGATTCTATAACAA--TCGATGT-ATACGATATATATAATTTTGTAGGTAAAGATAATTAAGCTTAAAAT-TATCA-GTCAAGATTTTATCGAAA-TTTTATGATAAA-TTTT-AT-CAAGATTAAGCTC-GTG-TCATAAATTTTTGATTCCAGCATGACACGGAGTGTTTTTCTCACAAGAATATGGATA-GAATGA-ACTTTTTTCTTTTA-GAGAACTCATACCCCAGATTTCTATTGATAATTTTCTCACAGGATGAACTCGTACCTCAGAATTTTATTTAATGAAAT-TG-ACAG----TTCCTTGTCCAGGAGAACTCGTACCTCAGATATCTTCATGGCA-GA--AATGA--CTAAAAAAAAAATTT-----T-------CAGGAGAACGTCGTATACCGCA-GATTTTATT-GATAAAACGGA-----AAAGTTTTTTATCCAGGAGAGACTC----GT-CCCT-------G--TTTTATAGATGATAATTGAT-AGTAGA----TTCTCCAGAATTT-GTAACACAGTATTTTATTT--ATAAATTGA--CCA--ATTTTTTCTCCAGCGAGAACTT--GTACCCTGATTTTTATATAATAAAACTGACAAAGATT-TTCTTCAGGAGAACTCGTACCCT
gi|10 : accATCA-A--AATTTCAC-TTTTCTATACTGTATACCC-ATCT-TTTG-GATAGCAAAACT-TGTCCTATTCAAAAATGTTTTAAT-------------G-TCCATT--ACTCCTCGCAACACGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGgata
gi|11 : TTTATGATAAA-TTTTAAT-C-AGATTAA-CTCGGTG-TCA-AAA-TTTTAATTCCAGCATGACACG----GTTTTTTTTACAGAAAAAT-CATAGAAATGA-CTTTTTTTCTTTTAGGAGAAC
gi|12 : -TTTCCGACG-TAGATTT---CAT-ATT-G-CC-AAATATT--GGACAACGTCAATC--A--ATTTTGACCT-AGAT--TT-TGAT--TGCCGTTT-GCCATTG-CT---CAACCAGTTAGTTTT-ATGTT
gi|13 : cG-TCA-AAA-TTTTGATTCCAGCATGACACG----TTTTTTCTC-CAGAAATAT-GATATAAATGACATTTTTTTCTTTTAGGAAAACTCATA-CCCAGATTTCTATTag
gi|14 : tTATATGCAGCAGAC--CCTTGTTCC--A-GTTTTTAAAAATAA-----CA---TGTATGAAGTTAAA-TGTCATAGGt
gi|15 : C---GAGTTTTACTGGAGAGAAAACACAACTTTCTCGTTTca
gi|16 : TTTTATCAA-TAAAATCTGGGTACG--AGTT
gi|2 : gacaTTTCGCTGCCAGCGCTTTCCGACGT-AAATTTT--CAA-ATTTG-CCCAGA-ATT--GCA-A-CGTC-A-A--A--AATTTGACGTAAGAA--ATCTGT--ATGACGTTTAGCC-TTC-CGGGACAAC--GTTATTTT-CATGTTTGCTGAACAGTACAG-GCACATGCGCTCTTTTCCTC-TGCGGCTGTGCGCTT-TAATAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTGG-AGCGTGTACAC-TTGTACCAAAtt
gi|2 : TACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTACGGG-ATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATGATG-TTATACCATTTTTACACatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGC-GATGACCTTGTTTCTTATGGCTTTAAAAGTAA-----CAC--TGT-TGAAGTTAAA-TGT--CAAGGCA-TGAAAAATCATACAAATTT-ACTTTTTCTATACT-TACA-CT-ATTTATCAGTGATTACAAAACTCTGTCCTGCTC-AAAATGTTTTAATAATTAGTCTCA-TGATCCATTGCACTCCTCGCAACAAGCGCTGCCTTTT---CCTACACTGGAAGTGAAGCTTCTACCAAGTTCCCCCGGAGAAAATGTTTCGTCAATTTTAATCAA-AGAA-ACTGGGTTTCTGAGTTCTCCTGGAAAAAAACTTTGTTTTC-ATTTTTATCAATTAAAAT-TGGGTACG--AGTTCcagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|3 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaAAGAGAACTCATG-CCC---TT-----------TTTTTTCCCAGGA-AAACTCGTACTTC-GATTTCTATTTGA-ATAATGTGCAAAGTTTTTTTTTTCTCCGGAAGAACTCATATC-CA-A-ATGTCTATGACA-GA--AATTA--C-------AAAGTTT-----TTC---TCCAGGAGAAC----TG-ATC-CA-GA-TTTATCAGATAAAGTTAAATGACCAAG-TTTTTCACCATGAGA-ACTCCTTAGTGACCTATTAATAA--TTTTATA-ATAAAAATTGACAAACAGATTTCTTCTCCAAAACTCAGT-A-CCA-GAT---ATTG--ATG---TGGT-ACA--A-TCTTGCTCCAG-GAGAAGCT--GCACTCT-ATTTTT
gi|4 : aactcgtacccTTAGACTTGCAATT-GTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATT-AGC-TAAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAATAC-AGATTAAG----GCGATCA-AAA-TTTTGATTCCAGCATGGCACG----GTTTTTCTC-CAGAAATAT-ctggatacgag
gi|5 : T-----TA----TCCAGGACAAC-TCGTA--CC-CA-GAATTTATT-GATAAAATTGN-----NNNNNNNNNNNNNNNNNNNN-TTTT----CTACCCT-------GATTTTTATA-AT-AAAATTTAT-AATGAT-TTCTTCTGGAGAACTC-GT-ACCCA-TATTTCTTTTTGGTAAAATG---ACTTAAGTTTTTCTTCAG-GAGAACTCATGTTCCAAGAT----AT-TGTCGGG-T--ACGA----T-TTCTCCAGGAGAACTCGTACCCT
gi|5 : AGAACTC-GT-ACCCA-GA------------AAATAGGGTACG--AGTT---CTCCTG-GAGAAATC--GTACCC-GA---CAATATCTTGGAAC--ATGA--GTTCTCCTGAAGAAAAACTattttctgggtacgagttctc
gi|6 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaTTTTTTTTCTGTCAGTTTATAAAAGT-ACA----TGGGAGAAATGTAGCGTATG--AATTCTGAAAAAGGAAAAAAACTCTTT---TGTC-AATGTCTATGTATTTAAA--GTGGTTTACTGTGAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTTATTAAAAAc
gi|7 : gaTTTCGCTGCCAACG-TTTTGAATGT-AAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-A-CGTC-AAA--ATTAATTTTACGTAAGAA--AT-TGT--ATGACGTTT-GC-------T---CAAC--GTTATTTTTCATGTTTA-TGA-C-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTG-GCCTAATACAAGAtt
gi|8 : TTTGCTGCCAACG-TTTTGAATGTAAAATTTC--CAAAGTT-GGCC-AAA-ATTTCGCA-AACGTC-AAATTA--AATTTTACGTAAGAA---T-TGT--ATGACGT---G---TTG-CT---CAA---GTATTTTTTCATGTTTA-TGGGC-GTACAG-GCACATGT--TCTTTCTCTCTTGCG-CTca
gi|9 : cTTTTTGTCTAGGAAAACTCGTACC-----TATTTTTGTAACATGATGAATGAGAT-------AAACTTTATTGTTTAGGGTTTAGGAAAAC-TTGTA--CC-CATAATTTTAT--GACAGAAATGA-----CA-GTTTTTTCTCCAGGAGA-ACTT----GTAACCT-------A--TTTtgg
Alignments
lowQualScore : 22 111 11 11 1 1111111 111 222 11111111111 111 11 1 1 1 11 1 1 1 1 1 2222 11 1 111 1 11 1 1 1 1 1 11 11 2222 1 2222 11 1 1 1 11 1 1 11 1 1 11 1 1 1 1 2222 11 222 1 1 11 2222 4444444444 1 22 1 1 1 1 11 1 1 11 1 33333 33 1 222 66666666666 33333333 1 11 222 11 22222 1 11 1 33333333 11 222 1 1 1 11 1 222 222 1 11 1 1 1 1 11 1 1 1 1 1 1 11 1 1 1 1 111 22222 1 1 1 2222 1 1 2 1 1 11111111111 1 1 1 1 1 2222 333333 1 11 6666666666666666666666666666 111 22 1 1 22 22222 1 2222 4444444444 1 1 1 22 1 1 66666666666666666666666666666 1 11 22222222 2222 333333
lowQualScore : 2 8 3 11 444 44 8 8 8 8 11 8 3 8 7777777 0 777 8 999 0 8 77777777777 666 1 3 77 9 0 0 33 0 0 6 3 5 5 4444 88 1 5 1 777 5 77 5 5 1 1 5 1 1 5 1 1 22 1 1 22 5 88 1 88 2222 1 5 1 1 4444 2 88 1 5 5 5 1 88 1 5 5 1 2 77 1 5 5 66 333 5 5 1 5 5 2222 66 000 1 1 5 5 0 7 88 2222 4444444444 7 3 00 5 3 6 7 2 3 6 6 44 3 3 44 2 7 44444 33 3 333 33333333333 66666666 1 5 66 111 1 88 77777 3 6 88 1 5 55555555 1 1 88 111 5 5 5 1 88 1 5 333 6 111 5 88 5 1 5 1 5 2 1 5 22 88 5 5 5 22 5 5 5 66 5 5 1 1 1 1 5 3 7 666 44444 0 0 0 0 1111 5 0 6 3 6 3 7 66666666666 1 5 5 1 5 1 5 5 1 4444 0 888888 1 3 88 1111111111111111111111111111 0 0 333 55 0 0 9 00 1 55555 5 5 0 1111 88 4444444444 3 2 3 00 0 0 2 33333333333333333333333333333 0 3 3 0 1 33 33333333 7 111 1111 333333 1
lowQualScore : . . . .. ... .. . . . . .. . . . ....... . ... . ... . . ........... ... . . .. . . . .. . . . . . . .... .. . . . ... . .. . . . . . . . . . . .. . . .. . .. . .. .... . . . . .... . .. . . . . . .. . . . . . .. . . . .. ... . . . . . .... .. ... . . . . . . .. .... .......... . . .. . . . . . . . . .. . . .. . . ..... .. . ... ........... ........ . . .. ... . .. ..... . . .. . . ........ . . .. ... . . . . .. . . ... . ... . .. . . . . . . . . .. .. . . . .. . . . .. . . . . . . . . . ... ..... . . . . .... . . . . . . . ........... . . . . . . . . . .... . ...... . . .. ............................ . . ... .. . . . .. . ..... . . . .... .. .......... . . . .. . . . ............................. . . . . . .. ........ . ... .... ...... .
lowQualScore : 5 0 2 44 222 44 0 0 0 0 00 0 6 0 6666666 8 000 0 222 8 0 44444444444 000 4 8 00 0 0 0 88 0 0 7 3 5 0 0000 55 0 5 0 555 5 55 5 5 0 0 5 0 0 5 0 0 00 0 0 00 0 55 0 55 5555 0 5 0 0 5555 5 00 0 5 5 0 0 00 0 5 5 0 5 55 0 5 5 55 000 5 0 0 5 0 5555 55 555 0 0 0 5 7 3 33 7777 7777777777 3 3 77 0 3 7 3 0 3 7 7 33 3 3 00 0 3 00000 33 3 333 33333333333 00000000 0 5 55 000 0 55 00000 3 7 33 0 5 00000000 0 0 00 000 0 0 0 0 00 0 5 333 7 000 5 00 5 0 5 0 5 5 0 0 00 00 0 5 5 00 5 5 5 55 5 0 0 0 0 0 5 3 3 777 00000 7 0 0 0 2222 5 0 7 3 5 3 3 22222222222 0 5 5 0 5 0 0 0 0 5555 7 777777 0 3 33 0000000000000000000000000000 2 2 555 55 0 0 8 55 2 00000 8 8 0 2222 00 2222222222 3 0 3 77 0 0 5 55555555555555555555555555555 2 2 0 0 0 88 00000000 3 333 0000 777777 0
consensus : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC--GAGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
Reference ( family-3926 ) : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC--GAGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
gi|1 : TTTCGCTGC-AGCG-TTTCTGAC--TAATTTTCACCAA--TT-G-CC-AAA-TTT--GCA-AGCGTC-ATA--A--AATTTGACGTAAGAACAAT-TGTTTATGACGTTT-GCC-TTGTCT---CAAA--GTTTTTTTCCATGTTT--TGA-C-GTACAGCGACCATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATT-TGTATTTTAATT----CA--GATTGGGAATGTTTGTACCGTGTACAGAGTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTA--AGATATATATCTTTCTATAAGATTATGTTGAATTTTTTTTTACACAGTATTCTTCAAA-AACATTTAAATAATCATTCACTTGCACGGTAAGCAACT--TTTGTTTATGT--GATCAGA---GAAC-AAACTTTACG----AAAACCTCAC--ATGAAAATTA-ACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGACTCACTTCTTGTTTCTGCAAG-GATCCAATAGCGTTTAC--GTTCGAGATAAAAAGTTATAATGAACCGACACATCGG-CTAATTTTAGTTGCAGA-CC-CCCTTCCCAGTTCTGT-AGCT-AATCACCATTG----TAAAAACGT-TTCACATCGAAATGAATACGTAGTAGC-TATATGCGCTAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAAACGTTTACGGTGTATGAAGTTAAAATGT-ATAGGGCAGTGAAAAATCA-ACAA--TTTAC-TTTTCTATAATGTATACCGGATTC-TCAG-GATTACAAAACTC-GTCCTGCTCGAAAATGTTTTAATAATTAGTCTCCTTG-TCCATTTCACTCCTCGCAACAAACG-TGCCTTTTTTCCCTACACTGGAAGTG-----------AAGTTCTCCCGGAGA--------CGTCAATTGTAATCAATAGAATTCTGG---TGCGAGTTCTCCTGG--GAAAACTTTGT---CAATTTTTATCAA-TAAAATCTGGGTACGGGAGTTCTGGATTTTTTTTTCTGTCAGTTTATTAAAGTTACAAATGT---AGAAATGTTGGGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAAT-TCTAT-CGTATAAATGGTGGGT-AC---GAGTTCTACTGGAGAGAAAACAAAACTTT-TCGTTTTC---TCAT-AAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGA--TGTAATTTGTGGTTTTG-TTTGGCAATAATTACAATACTGTGAGAACATCGATCTCAATAAAACAACAAT-TTCGATTCTATAACAA--TCGATGT-ATACGATATATATAATTTTGTAGGTAAAGATAATTAAGCTTAAAAT-TATCA-GTCAAGATTTTATCGAAA-TTTTATGATAAA-TTTT-AT-CAAGATTAAGCTC-GTG-TCATAAATTTTTGATTCCAGCATGACACGGAGTGTTTTTCTCACAAGAATATGGATA-GAATGA-ACTTTTTTCTTTTA-GAGAACTCATACCCCAGATTTCTATTGATAATTTTCTCACAGGATGAACTCGTACCTCAGAATTTTATTTAATGAAAT-TG-ACAG----TTCCTTGTCCAGGAGAACTCGTACCTCAGATATCTTCATGGCA-GA--AATGA--CTAAAAAAAAAATTT-----T-------CAGGAGAACGTCGTATACCGCA-GATTTTATT-GATAAAACGGA-----AAAGTTTTTTATCCAGGAGAGACTC----GT-CCCT-------G--TTTTATAGATGATAATTGAT-AGTAGA----TTCTCCAGAATTT-GTAACACAGTATTTTATTT--ATAAATTGA--CC--AATTTTTTCTCCAGCGAGAACTT--GTACCCTGATTTTTATATAATAAAACTGACAAAGATT-TTCTTCAGGAGAACTCGTACCCT
gi|10 : accATCA-A--AATTTCAC-TTTTCTATACTGTATACCC-ATCT-TTTG-GATAGCAAAACT-TGTCCTATTCAAAAATGTTTTAAT-------------G-TCCATT--ACTCCTCGCAACACGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGgata
gi|11 : TTTATGATAAA-TTTTAAT-C-AGATTAA-CTCGGTG-TCA-AAA-TTTTAATTCCAGCATGACACG----GTTTTTTTTACAGAAAAAT-CATAGAAATGA-CTTTTTTTCTTTTAGGAGAAC
gi|12 : -TTTCCGACG-TAGATTT---CAT-ATT-G-CC-AAATATT--GGACAACGTCAATC--A--ATTTTGACCT-AGAT--TT-TGAT--TGCCGTTT-GCCATTG-CT---CAACCAGTTAGTTTT-ATGTT
gi|13 : cG-TCA-AAA-TTTTGATTCCAGCATGACACG----TTTTTTCTC-CAGAAATAT-GATATAAATGACATTTTTTTCTTTTAGGAAAACTCATA-CCCAGATTTCTATTag
gi|14 : tTATATGCAGCAGAC--CCTTGTTCC--A-GTTTTTAAAAATAA-----CA---TGTATGAAGTTAAA-TGTCATAGGt
gi|15 : C---GAGTTTTACTGGAGAGAAAACACAACTTTCTCGTTTca
gi|16 : TTTTATCAA-TAAAATCTGGGTACG--AGTT
gi|2 : gacaTTTCGCTGCCAGCGCTTTCCGACGT-AAATTTT--CAA-ATTTG-CCCAGA-ATT--GCA-A-CGTC-A-A--A--AATTTGACGTAAGAA--ATCTGT--ATGACGTTTAGCC-TTC-CGGGACAAC--GTTATTTT-CATGTTTGCTGAACAGTACAG-GCACATGCGCTCTTTTCCTC-TGCGGCTGTGCGCTT-TAATAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTGG-AGCGTGTACAC-TTGTACCAAAtt
gi|2 : TACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTACGGG-ATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATGATG-TTATACCATTTTTACACatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGC-GATGACCTTGTTTCTTATGGCTTTAAAAGTAA-----CAC--TGT-TGAAGTTAAA-TGT--CAAGGCA-TGAAAAATCATACAAATTT-ACTTTTTCTATACT-TACA-CT-ATTTATCAGTGATTACAAAACTCTGTCCTGCTC-AAAATGTTTTAATAATTAGTCTCA-TGATCCATTGCACTCCTCGCAACAAGCGCTGCCTTTT---CCTACACTGGAAGTGAAGCTTCTACCAAGTTCCCCCGGAGAAAATGTTTCGTCAATTTTAATCAA-AGAA-ACTGGGTTTCTGAGTTCTCCTGGAAAAAAACTTTGTTTTC-ATTTTTATCAATTAAAAT-TGGGTACG--AGTTCcagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|3 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaAAGAGAACTCATG-CCC---TT-----------TTTTTTCCCAGGA-AAACTCGTACTTC-GATTTCTATTTGA-ATAATGTGCAAAGTTTTTTTTTTCTCCGGAAGAACTCATATC-CA-A-ATGTCTATGACA-GA--AATTA--C-------AAAGTTT-----TTC---TCCAGGAGAAC----TG-ATC-CA-GA-TTTATCAGATAAAGTTAAATGACCAAG-TTTTTCACCATGAGA-ACTCCTTAGTGACCTATTAATAA--TTTTATA-ATAAAAATTGACAAACAGATTTCTTCTCCAAAACTCAGT-A-CCA-GAT---ATTG--ATG---TGGT-AC---AATCTTGCTCCAG-GAGAAGCT--GCACTCT-ATTTTT
gi|4 : aactcgtacccTTAGACTTGCAATT-GTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATT-AGC-TAAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAATAC-AGATTAAG----GCGATCA-AAA-TTTTGATTCCAGCATGGCACG----GTTTTTCTC-CAGAAATAT-ctggatacgag
gi|5 : T-----TA----TCCAGGACAAC-TCGTA--CC-CA-GAATTTATT-GATAAAATTGN-----NNNNNNNNNNNNNNNNNNNN-TTTT----CTACCCT-------GATTTTTATA-AT-AAAATTTAT-AATGAT-TTCTTCTGGAGAACTC-GT-ACCCA-TATTTCTTTTTGGTAAAATG---ACTTAAGTTTTTCTTCAG-GAGAACTCATGTTCCAAGAT----AT-TGTCGGG-T--ACGA----T-TTCTCCAGGAGAACTCGTACCCT
gi|5 : AGAACTC-GT-ACCCA-GA------------AAATAGGGTAC--GAGTT---CTCCTG-GAGAAATC--GTACCC-GA---CAATATCTTGGAAC--ATGA--GTTCTCCTGAAGAAAAACTattttctgggtacgagttctc
gi|6 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaTTTTTTTTCTGTCAGTTTATAAAAGT-ACA----TGGGAGAAATGTAGCGTATG--AATTCTGAAAAAGGAAAAAAACTCTTT---TGTC-AATGTCTATGTATTTAAA--GTGGTTTACTGTGAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTTATTAAAAAc
gi|7 : gaTTTCGCTGCCAACG-TTTTGAATGT-AAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-A-CGTC-AAA--ATTAATTTTACGTAAGAA--AT-TGT--ATGACGTTT-GC-------T---CAAC--GTTATTTTTCATGTTTA-TGA-C-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTG-GCCTAATACAAGAtt
gi|8 : TTTGCTGCCAACG-TTTTGAATGTAAAATTTC--CAAAGTT-GGCC-AAA-ATTTCGCA-AACGTC-AAATTA--AATTTTACGTAAGAA---T-TGT--ATGACGT---G---TTG-CT---CAA---GTATTTTTTCATGTTTA-TGGGC-GTACAG-GCACATGT--TCTTTCTCTCTTGCG-CTca
gi|9 : cTTTTTGTCTAGGAAAACTCGTACC-----TATTTTTGTAACATGATGAATGAGAT-------AAACTTTATTGTTTAGGGTTTAGGAAAAC-TTGTA--CC-CATAATTTTAT--GACAGAAATGA-----CA-GTTTTTTCTCCAGGAGA-ACTT----GTAACCT-------A--TTTtgg
Alignments
lowQualScore : 22 111 11 11 1 1111111 111 222 11111111111 111 11 1 1 1 11 1 1 1 1 1 2222 11 1 111 1 11 1 1 1 1 1 11 11 2222 1 2222 11 1 1 1 11 1 1 11 1 1 11 1 1 1 1 2222 11 222 1 1 11 2222 4444444444 1 22 1 1 1 1 11 1 1 11 1 33333 33 1 222 66666666666 33333333 1 11 222 11 22222 1 11 1 33333333 11 222 1 1 1 11 1 222 222 1 11 1 1 1 1 11 1 1 1 1 1 1 11 1 1 1 1 111 22222 1 1 1 2222 1 1 2 1 1 11111111111 1 1 1 1 1 2222 333333 1 11 6666666666666666666666666666 111 22 1 1 22 22222 1 2222 4444444444 1 1 1 22 1 1 66666666666666666666666666666 1 11 22222222 2222 333333
lowQualScore : 2 8 3 11 444 44 8 8 8 8 11 8 3 8 7777777 0 777 8 999 0 8 77777777777 666 1 3 77 9 0 0 33 0 0 6 3 5 5 4444 88 1 5 1 777 5 77 5 5 1 1 5 1 1 5 1 1 22 1 1 22 5 88 1 88 2222 1 5 1 1 4444 2 88 1 5 5 5 1 88 1 5 5 1 2 77 1 5 5 66 333 5 5 1 5 5 2222 66 000 1 1 5 5 0 7 88 2222 4444444444 7 3 00 5 3 6 7 2 3 6 6 44 3 3 44 2 7 44444 33 3 333 33333333333 66666666 1 5 66 111 1 88 77777 3 6 88 1 5 55555555 1 1 88 111 5 5 5 1 88 1 5 333 6 111 5 88 5 1 5 1 5 2 1 5 22 88 5 5 5 22 5 5 5 66 5 5 1 1 1 1 5 3 7 666 44444 0 0 0 0 1111 5 0 6 3 6 3 7 66666666666 1 5 5 1 5 1 5 5 1 4444 0 888888 1 3 88 1111111111111111111111111111 0 0 333 55 0 0 9 00 1 55555 5 5 0 1111 88 4444444444 3 2 3 00 0 0 2 33333333333333333333333333333 0 3 3 0 1 33 33333333 7 111 1111 333333 1
lowQualScore : . . . .. ... .. . . . . .. . . . ....... . ... . ... . . ........... ... . . .. . . . .. . . . . . . .... .. . . . ... . .. . . . . . . . . . . .. . . .. . .. . .. .... . . . . .... . .. . . . . . .. . . . . . .. . . . .. ... . . . . . .... .. ... . . . . . . .. .... .......... . . .. . . . . . . . . .. . . .. . . ..... .. . ... ........... ........ . . .. ... . .. ..... . . .. . . ........ . . .. ... . . . . .. . . ... . ... . .. . . . . . . . . .. .. . . . .. . . . .. . . . . . . . . . ... ..... . . . . .... . . . . . . . ........... . . . . . . . . . .... . ...... . . .. ............................ . . ... .. . . . .. . ..... . . . .... .. .......... . . . .. . . . ............................. . . . . . .. ........ . ... .... ...... .
lowQualScore : 5 0 2 44 222 44 0 0 0 0 00 0 6 0 6666666 8 000 0 222 8 0 44444444444 000 4 8 00 0 0 0 88 0 0 7 3 5 0 0000 55 0 5 0 555 5 55 5 5 0 0 5 0 0 5 0 0 00 0 0 00 0 55 0 55 5555 0 5 0 0 5555 5 00 0 5 5 0 0 00 0 5 5 0 5 55 0 5 5 55 000 5 0 0 5 0 5555 55 555 0 0 0 5 7 3 33 7777 7777777777 3 3 77 0 3 7 3 0 3 7 7 33 3 3 00 0 3 00000 33 3 333 33333333333 00000000 0 5 55 000 0 55 00000 3 7 33 0 5 00000000 0 0 00 000 0 0 0 0 00 0 5 333 7 000 5 00 5 0 5 0 5 5 0 0 00 00 0 5 5 00 5 5 5 55 5 0 0 0 0 0 5 3 3 777 00000 7 0 0 0 2222 5 0 7 3 5 3 3 22222222222 0 5 5 0 5 0 0 0 0 5555 7 777777 0 3 33 0000000000000000000000000000 2 2 555 55 0 0 8 55 2 00000 8 8 0 2222 00 2222222222 3 0 3 77 0 0 5 55555555555555555555555555555 2 2 0 0 0 88 00000000 3 333 0000 777777 0
consensus : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC--GAGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
Reference ( family-3926 ) : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC--GAGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
gi|1 : TTTCGCTGC-AGCG-TTTCTGAC--TAATTTTCACCAA--TT-G-CC-AAA-TTT--GCA-AGCGTC-ATA--A--AATTTGACGTAAGAACAAT-TGTTTATGACGTTT-GCC-TTGTCT---CAAA--GTTTTTTTCCATGTTT--TGA-C-GTACAGCGACCATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATT-TGTATTTTAATT----CA--GATTGGGAATGTTTGTACCGTGTACAGAGTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTA--AGATATATATCTTTCTATAAGATTATGTTGAATTTTTTTTTACACAGTATTCTTCAAA-AACATTTAAATAATCATTCACTTGCACGGTAAGCAACT--TTTGTTTATGT--GATCAGA---GAAC-AAACTTTACG----AAAACCTCAC--ATGAAAATTA-ACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGACTCACTTCTTGTTTCTGCAAG-GATCCAATAGCGTTTAC--GTTCGAGATAAAAAGTTATAATGAACCGACACATCGG-CTAATTTTAGTTGCAGA-CC-CCCTTCCCAGTTCTGT-AGCT-AATCACCATTG----TAAAAACGT-TTCACATCGAAATGAATACGTAGTAGC-TATATGCGCTAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAAACGTTTACGGTGTATGAAGTTAAAATGT-ATAGGGCAGTGAAAAATCA-ACAA--TTTAC-TTTTCTATAATGTATACCGGATTC-TCAG-GATTACAAAACTC-GTCCTGCTCGAAAATGTTTTAATAATTAGTCTCCTTG-TCCATTTCACTCCTCGCAACAAACG-TGCCTTTTTTCCCTACACTGGAAGTG-----------AAGTTCTCCCGGAGA--------CGTCAATTGTAATCAATAGAATTCTGG---TGCGAGTTCTCCTGG--GAAAACTTTGT---CAATTTTTATCAA-TAAAATCTGGGTACGGGAGTTCTGGATTTTTTTTTCTGTCAGTTTATTAAAGTTACAAATGT---AGAAATGTTGGGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAAT-TCTAT-CGTATAAATGGTGGGT-AC---GAGTTCTACTGGAGAGAAAACAAAACTTT-TCGTTTTC---TCAT-AAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGA--TGTAATTTGTGGTTTTG-TTTGGCAATAATTACAATACTGTGAGAACATCGATCTCAATAAAACAACAAT-TTCGATTCTATAACAA--TCGATGT-ATACGATATATATAATTTTGTAGGTAAAGATAATTAAGCTTAAAAT-TATCA-GTCAAGATTTTATCGAAA-TTTTATGATAAA-TTTT-AT-CAAGATTAAGCTC-GTG-TCATAAATTTTTGATTCCAGCATGACACGGAGTGTTTTTCTCACAAGAATATGGATA-GAATGA-ACTTTTTTCTTTTA-GAGAACTCATACCCCAGATTTCTATTGATAATTTTCTCACAGGATGAACTCGTACCTCAGAATTTTATTTAATGAAAT-TG-ACAG----TTCCTTGTCCAGGAGAACTCGTACCTCAGATATCTTCATGGCA-GA--AATGA--CTAAAAAAAAAATTT-----T-------CAGGAGAACGTCGTATACCGCA-GATTTTATT-GATAAAACGGA-----AAAGTTTTTTATCCAGGAGAGACTC----GT-CCCT-------G--TTTTATAGATGATAATTGAT-AGTAGA----TTCTCCAGAATTT-GTAACACAGTATTTTATTT--ATAAATTGA--CC--AATTTTTTCTCCAGCGAGAACTT--GTACCCTGATTTTTATATAATAAAACTGACAAAGATT-TTCTTCAGGAGAACTCGTACCCT
gi|10 : accATCA-A--AATTTCAC-TTTTCTATACTGTATACCC-ATCT-TTTG-GATAGCAAAACT-TGTCCTATTCAAAAATGTTTTAAT-------------G-TCCATT--ACTCCTCGCAACACGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGgata
gi|11 : TTTATGATAAA-TTTTAAT-C-AGATTAA-CTCGGTG-TCA-AAA-TTTTAATTCCAGCATGACACG----GTTTTTTTTACAGAAAAAT-CATAGAAATGA-CTTTTTTTCTTTTAGGAGAAC
gi|12 : -TTTCCGACG-TAGATTT---CAT-ATT-G-CC-AAATATT--GGACAACGTCAATC--A--ATTTTGACCT-AGAT--TT-TGAT--TGCCGTTT-GCCATTG-CT---CAACCAGTTAGTTTT-ATGTT
gi|13 : cG-TCA-AAA-TTTTGATTCCAGCATGACACG----TTTTTTCTC-CAGAAATAT-GATATAAATGACATTTTTTTCTTTTAGGAAAACTCATA-CCCAGATTTCTATTag
gi|14 : tTATATGCAGCAGAC--CCTTGTTCC--A-GTTTTTAAAAATAA-----CA---TGTATGAAGTTAAA-TGTCATAGGt
gi|15 : C---GAGTTTTACTGGAGAGAAAACACAACTTTCTCGTTTca
gi|16 : TTTTATCAA-TAAAATCTGGGTACG--AGTT
gi|2 : gacaTTTCGCTGCCAGCGCTTTCCGACGT-AAATTTT--CAA-ATTTG-CCCAGA-ATT--GCA-A-CGTC-A-A--A--AATTTGACGTAAGAA--ATCTGT--ATGACGTTTAGCC-TTC-CGGGACAAC--GTTATTTT-CATGTTTGCTGAACAGTACAG-GCACATGCGCTCTTTTCCTC-TGCGGCTGTGCGCTT-TAATAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTGG-AGCGTGTACAC-TTGTACCAAAtt
gi|2 : TACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTACGGG-ATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATGATG-TTATACCATTTTTACACatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGC-GATGACCTTGTTTCTTATGGCTTTAAAAGTAA-----CAC--TGT-TGAAGTTAAA-TGT--CAAGGCA-TGAAAAATCATACAAATTT-ACTTTTTCTATACT-TACA-CT-ATTTATCAGTGATTACAAAACTCTGTCCTGCTC-AAAATGTTTTAATAATTAGTCTCA-TGATCCATTGCACTCCTCGCAACAAGCGCTGCCTTTT---CCTACACTGGAAGTGAAGCTTCTACCAAGTTCCCCCGGAGAAAATGTTTCGTCAATTTTAATCAA-AGAA-ACTGGGTTTCTGAGTTCTCCTGGAAAAAAACTTTGTTTTC-ATTTTTATCAATTAAAAT-TGGGTACG--AGTTCcagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|3 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaAAGAGAACTCATG-CCC---TT-----------TTTTTTCCCAGGA-AAACTCGTACTTC-GATTTCTATTTGA-ATAATGTGCAAAGTTTTTTTTTTCTCCGGAAGAACTCATATC-CA-A-ATGTCTATGACA-GA--AATTA--C-------AAAGTTT-----TTC---TCCAGGAGAAC----TG-ATC-CA-GA-TTTATCAGATAAAGTTAAATGACCAAG-TTTTTCACCATGAGA-ACTCCTTAGTGACCTATTAATAA--TTTTATA-ATAAAAATTGACAAACAGATTTCTTCTCCAAAACTCAGT-A-CCA-GAT---ATTG--ATG---TGGT-AC---AATCTTGCTCCAG-GAGAAGCT--GCACTCT-ATTTTT
gi|4 : aactcgtacccTTAGACTTGCAATT-GTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATT-AGC-TAAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAATAC-AGATTAAG----GCGATCA-AAA-TTTTGATTCCAGCATGGCACG----GTTTTTCTC-CAGAAATAT-ctggatacgag
gi|5 : T-----TA----TCCAGGACAAC-TCGTA--CC-CA-GAATTTATT-GATAAAATTGN-----NNNNNNNNNNNNNNNNNNNN-TTTT----CTACCCT-------GATTTTTATA-AT-AAAATTTAT-AATGAT-TTCTTCTGGAGAACTC-GT-ACCCA-TATTTCTTTTTGGTAAAATG---ACTTAAGTTTTTCTTCAG-GAGAACTCATGTTCCAAGAT----AT-TGTCGGG-T--ACGA----T-TTCTCCAGGAGAACTCGTACCCT
gi|5 : AGAACTC-GT-ACCCA-GA------------AAATAGGGTAC--GAGTT---CTCCTG-GAGAAATC--GTACCC-GA---CAATATCTTGGAAC--ATGA--GTTCTCCTGAAGAAAAACTattttctgggtacgagttctc
gi|6 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaTTTTTTTTCTGTCAGTTTATAAAAGT-ACA----TGGGAGAAATGTAGCGTATG--AATTCTGAAAAAGGAAAAAAACTCTTT---TGTC-AATGTCTATGTATTTAAA--GTGGTTTACTGTGAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTTATTAAAAAc
gi|7 : gaTTTCGCTGCCAACG-TTTTGAATGT-AAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-A-CGTC-AAA--ATTAATTTTACGTAAGAA--AT-TGT--ATGACGTTT-GC-------T---CAAC--GTTATTTTTCATGTTTA-TGA-C-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTG-GCCTAATACAAGAtt
gi|8 : TTTGCTGCCAACG-TTTTGAATGTAAAATTTC--CAAAGTT-GGCC-AAA-ATTTCGCA-AACGTC-AAATTA--AATTTTACGTAAGAA---T-TGT--ATGACGT---G---TTG-CT---CAA---GTATTTTTTCATGTTTA-TGGGC-GTACAG-GCACATGT--TCTTTCTCTCTTGCG-CTca
gi|9 : cTTTTTGTCTAGGAAAACTCGTACC-----TATTTTTGTAACATGATGAATGAGAT-------AAACTTTATTGTTTAGGGTTTAGGAAAAC-TTGTA--CC-CATAATTTTAT--GACAGAAATGA-----CA-GTTTTTTCTCCAGGAGA-ACTT----GTAACCT-------A--TTTtgg
blockSeqs : C C C TA T AG T G C T TC C A A AAATT T C T A CTTCCGGGA CCA A T GC A A . GC T G C A . C AATC TT G . G CT . CC . . T A . A T T G A AT A G GG . AT T TT TTTT T T A G TTAT G GT T . T . T . T T . T C CC T . . TT TCA A G A T G CGCG AA . C C . A A GA TTAT CAC A . CA . T C A C T G C C A T CT A A ATGA GC C . AAGCTTCTACC AAATGTTT T . A GTT C AA TTTC T C . A . TGGG A C . . . G G T . T T TGT C GTT T CT . T T C . G C G AT TC G . . GA . . . AA T . G A A C T T A AC CTCG A . . . A . G C G . A . C . . T . T G C A TTTT CAA G T TG GATAAACTTTATTGTTTAGGG TC A . T A CA T ATGAC A N . CTTA GA ATTAATAA . A A TT A . C TATTTCTTTTTGGTAAAATGACTTA T G . G AT TATTTTT A GTC AC GTTC C
blockSeqs : C . C T C A . . . . . . A . AATTA A . A . CATTGCT C A T A G . . . . . . . . . A CA . . . . . A . . . . T . . T . . G . . . . . . . . C . A C G . . . . . . T . G . . T T . . CAAAGTTTTTC TT . . . T T T . N T . . AC GAT . . . T . . C GATATTGATGTGGTAC T T . C . AGAT . CTT T T G
blockSeqs : C . G T C A . . . . . . . . TCA A . A . TTGCT C A T A . . . . . . . . . . . . A . . . . . . A . . . . . AA A . . . GAAAATAGGGTACG . . . A . GACA
blockSeqs : . G T . G . . . . . . . . AA . . A . T . T .
blockSeqCons : C** A* ACA**** A** A** CTCT*******
originalCons : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAA-GTT-G-CC-AAA-ATT--GCA-AACGTC-ANA--A--AATTTGACGTAAGAA--AT-TGTT-ATGACGTTT-GCC-TTG-CT---CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC--GAGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
finalCons : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC--CAAA-TT-G-CC-AAA-ATT--GCA-AACGTC-AACA----AATTTGACGTAAGAAA--T-TGTA--TGACGTTT-GCCTCT-------CAAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC--GAGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
Alignments
lowQualScore : 22 11 11 1 333333 111 11 55555555555555 111 11 1 1 1 11 1 1 1 1 1 2222 11 1 111 1 11 1 1 1 1 1 11 11 2222 1 2222 11 1 1 1 11 1 1 11 1 1 11 1 1 1 1 2222 11 222 1 1 11 2222 4444444444 1 22 1 1 1 1 11 1 1 11 1 33333 33 1 222 66666666666 33333333 1 11 222 11 22222 1 11 1 33333333 11 222 1 1 1 11 1 222 222 1 11 1 1 1 1 11 1 1 1 1 1 1 11 1 1 1 1 111 22222 1 1 1 2222 1 1 2 1 1 11111111111 1 1 1 1 1 2222 333333 1 11 6666666666666666666666666666 111 22 1 1 22 22222 1 2222 4444444444 1 1 1 22 1 1 66666666666666666666666666666 1 11 22222222 2222 333333
lowQualScore : 2 8 3 11 11 8 8 8 8 8 11 8 3 444444 0 777 8 11 8 8 00000000000000 666 1 3 77 9 0 0 33 0 0 6 3 5 5 4444 88 1 5 1 777 5 77 5 5 1 1 5 1 1 5 1 1 22 1 1 22 5 88 1 88 2222 1 5 1 1 4444 2 88 1 5 5 5 1 88 1 5 5 1 2 77 1 5 5 66 333 5 5 1 5 5 2222 66 000 1 1 5 5 0 7 88 2222 4444444444 7 3 00 5 3 6 7 2 3 6 6 44 3 3 44 2 7 44444 33 3 333 33333333333 66666666 1 5 66 111 1 88 77777 3 6 88 1 5 55555555 1 1 88 111 5 5 5 1 88 1 5 333 6 111 5 88 5 1 5 1 5 2 1 5 22 88 5 5 5 22 5 5 5 66 5 5 1 1 1 1 5 3 7 666 44444 0 0 0 0 1111 5 0 6 3 6 3 7 66666666666 1 5 5 1 5 1 5 5 1 4444 0 888888 1 3 88 1111111111111111111111111111 0 0 333 55 0 0 9 00 1 55555 5 5 0 1111 88 4444444444 3 2 3 00 0 0 2 33333333333333333333333333333 0 3 3 0 1 33 33333333 7 111 1111 333333 1
lowQualScore : . . . .. .. . . . . . .. . . ...... . ... . .. . . .............. ... . . .. . . . .. . . . . . . .... .. . . . ... . .. . . . . . . . . . . .. . . .. . .. . .. .... . . . . .... . .. . . . . . .. . . . . . .. . . . .. ... . . . . . .... .. ... . . . . . . .. .... .......... . . .. . . . . . . . . .. . . .. . . ..... .. . ... ........... ........ . . .. ... . .. ..... . . .. . . ........ . . .. ... . . . . .. . . ... . ... . .. . . . . . . . . .. .. . . . .. . . . .. . . . . . . . . . ... ..... . . . . .... . . . . . . . ........... . . . . . . . . . .... . ...... . . .. ............................ . . ... .. . . . .. . ..... . . . .... .. .......... . . . .. . . . ............................. . . . . . .. ........ . ... .... ...... .
lowQualScore : 5 0 2 44 22 0 0 0 0 0 00 0 6 222222 8 000 0 00 0 0 88888888888888 000 4 8 00 0 0 0 88 0 0 7 3 5 0 0000 55 0 5 0 555 5 55 5 5 0 0 5 0 0 5 0 0 00 0 0 00 0 55 0 55 5555 0 5 0 0 5555 5 00 0 5 5 0 0 00 0 5 5 0 5 55 0 5 5 55 000 5 0 0 5 0 5555 55 555 0 0 0 5 7 3 33 7777 7777777777 3 3 77 0 3 7 3 0 3 7 7 33 3 3 00 0 3 00000 33 3 333 33333333333 00000000 0 5 55 000 0 55 00000 3 7 33 0 5 00000000 0 0 00 000 0 0 0 0 00 0 5 333 7 000 5 00 5 0 5 0 5 5 0 0 00 00 0 5 5 00 5 5 5 55 5 0 0 0 0 0 5 3 3 777 00000 7 0 0 0 2222 5 0 7 3 5 3 3 22222222222 0 5 5 0 5 0 0 0 0 5555 7 777777 0 3 33 0000000000000000000000000000 2 2 555 55 0 0 8 55 2 00000 8 8 0 2222 00 2222222222 3 0 3 77 0 0 5 55555555555555555555555555555 2 2 0 0 0 88 00000000 3 333 0000 777777 0
consensus : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC-CAAA-TT-G-CC-AAA-ATT--GCA-AACGTCAA--NA--AATTTGACGTAAGAA--AT-TGT--ATGACGT-TT-GCC-TTG-CTC-----AAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC--GAGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
Reference ( family-3926 ) : NNNTTTCGCTGCCAGCG-TTTCCGACGTTAAATTTC-CAAA-TT-G-CC-AAA-ATT--GCA-AACGTCAA--CA--AATTTGACGTAAGAA--AT-TGT--ATGACGT-TT-GCC-T---CTC-----AAC--GTTATTTTTCATGTTTA-TGAGC-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTNGTANCGTGTACANANTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTACCAGATATATATCCTTCTATAAGNTTATGTTGAATTTTTTTTNACACAGTANCCTTCANATAACANTNAAANNATNATNCACNNGCACGGTAAGCAACTATTTTNTTTATGTTTGATCAGNTTTGANCTAAANTNTACGTTATAGAACCGCACGTATGANGATTATACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGNCTCACTTCTTGTTTCTGCANGTGATCCANTCGCGTTTACCCGTTCGAGATAAAAANTTATAATGAACCGACACATCGNTCTNNNTTTAGTTGCAGAACCGCCCNTCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGNATTCACATCGAANTNAATACGTAGTAGCATATATGCGGCAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAA-----CAC--TGTATGAAGTTAAA-TGT-ATAGGGCAGTGAAAAATCA-ACAAATTTCAC-TTTTCTATACTGTATACCN-ATTT-TCAG-GATTACAAAACTCTGTCCTGCTCGAAAATGTTTTAATAATTAGTCTC--TG-TCCATT-CACTCCTCGCAACAAGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGTTCCCCCGGAGAAAATGTTTCGTCAATTNTAATCAATAGAATNCTGGGTTTNCGAGTTCTCCTGGAAGAAAACTTTGTTTTCAATTTTTATCAA-TAAAATCTGGGTACG--AGTTCTGGATTTTTTTTTCTGTCAGTTTATNAAAGTTACAAATGTGGGAGAAATGTNGNGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAATGTCTATGCGTNTAAATGGTGGNTTAC---GAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTCATTAAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGACTTGCAATTTGTGNTTTTGTTTTGNCAATAATTACAATACTGTGAGAACATCGATCTCNATAAAACAACAATGTTCGATTCTANNGCAATCTCGATGTGATACGATATGTATAANNTTGTAGGTAAAGATAATTAAGCTTAAAATANACCATGTCAAGATNTNGTNGANATTTTTATGATAAA-TTTTAAT-C-AGATTAAGCTC-GCG-TCA-AAA-TTTTGATTCCAGCATGACACG----GTTTTTCTCACAGAAATAT-GATA-AAATGA-ATTTTTTTCTTTTAGGAGAACTCATA-CCCAGATTTCTATTGATAATTTTCTCNCAGGATGAACTCGTACCTCAGANTTCTATTTGATGNAATGTGCANAGTTTTTTTTTTGTCCGGGAGAACTCGTACC-CA-ATATNTTTATGACA-GA--AATGA--C-------AAANTTT-----TT----TCCAGGAGAAC-TCGTA-ACC-CA-GATTTTATC-GATAAAATTGA-----CAAGTTTTTTCTCCAGGAGA-ACTC----GTANCCT-------G--TTTTATA-ATGAAAATTGAT-AATAGA-TTCTTCTCCAGAACTC-GT-ACCCA-NATTTCATTT--ATAAATTGG--AC--GAGTTTTTCTCCAG-GAGAANTC--GTACCCTGATTTTTATATNTCGGAAC--ACGA--GTT-TTCTNCAGGAGAACTCGTACCCT
gi|1 : TTTCGCTGC-AGCG-TTTCTGAC--TAATTTTCACCAA-TT-G-CC-AAA-TTT--GCA-AGCGTCAT--AA--AATTTGACGTAAGAACAAT-TGTTTATGACGT-TT-GCC-TTGTCTC-----AAA--GTTTTTTTCCATGTTT--TGA-C-GTACAGCGACCATGT--TCTTTCTCTC-TGCG-CTGTGCGCTT-TTATAAGAGAGATT-TGTATTTTAATT----CA--GATTGGGAATGTTTGTACCGTGTACAGAGTGTACCAAACAATTTGATATCAATAATACATAATATCATAATACACACTGTA--AGATATATATCTTTCTATAAGATTATGTTGAATTTTTTTTTACACAGTATTCTTCAAA-AACATTTAAATAATCATTCACTTGCACGGTAAGCAACT--TTTGTTTATGT--GATCAGA---GAAC-AAACTTTACG----AAAACCTCAC--ATGAAAATTA-ACCATTCTCACACTTACACAATTTGACAATTATAAATCTAAGAGGACACTGATCCAGAAAGCTGGACTCACTTCTTGTTTCTGCAAG-GATCCAATAGCGTTTAC--GTTCGAGATAAAAAGTTATAATGAACCGACACATCGG-CTAATTTTAGTTGCAGA-CC-CCCTTCCCAGTTCTGT-AGCT-AATCACCATTG----TAAAAACGT-TTCACATCGAAATGAATACGTAGTAGC-TATATGCGCTAGAC--CCTTGTTTC--A-GTCTTTAAAAGTAAACGTTTACGGTGTATGAAGTTAAAATGT-ATAGGGCAGTGAAAAATCA-ACAA--TTTAC-TTTTCTATAATGTATACCGGATTC-TCAG-GATTACAAAACTC-GTCCTGCTCGAAAATGTTTTAATAATTAGTCTCCTTG-TCCATTTCACTCCTCGCAACAAACG-TGCCTTTTTTCCCTACACTGGAAGTG-----------AAGTTCTCCCGGAGA--------CGTCAATTGTAATCAATAGAATTCTGG---TGCGAGTTCTCCTGG--GAAAACTTTGT---CAATTTTTATCAA-TAAAATCTGGGTACGGGAGTTCTGGATTTTTTTTTCTGTCAGTTTATTAAAGTTACAAATGT---AGAAATGTTGGGTATGGAAATTCTGAAAAAGGAAAAAAACTCTTTCTTTGTCGAAT-TCTAT-CGTATAAATGGTGGGT-AC---GAGTTCTACTGGAGAGAAAACAAAACTTT-TCGTTTTC---TCAT-AAAAAGCCTGGGTTACAAGTAATTTCCCAGTGAAAAGGTATTACACGCTAATGAAGCGCCTCATAAATTATTATAGAAGTCACCGATAGGGTCGAATCGGTAATGTTAGA--TGTAATTTGTGGTTTTG-TTTGGCAATAATTACAATACTGTGAGAACATCGATCTCAATAAAACAACAAT-TTCGATTCTATAACAA--TCGATGT-ATACGATATATATAATTTTGTAGGTAAAGATAATTAAGCTTAAAAT-TATCA-GTCAAGATTTTATCGAAA-TTTTATGATAAA-TTTT-AT-CAAGATTAAGCTC-GTG-TCATAAATTTTTGATTCCAGCATGACACGGAGTGTTTTTCTCACAAGAATATGGATA-GAATGA-ACTTTTTTCTTTTA-GAGAACTCATACCCCAGATTTCTATTGATAATTTTCTCACAGGATGAACTCGTACCTCAGAATTTTATTTAATGAAAT-TG-ACAG----TTCCTTGTCCAGGAGAACTCGTACCTCAGATATCTTCATGGCA-GA--AATGA--CTAAAAAAAAAATTT-----T-------CAGGAGAACGTCGTATACCGCA-GATTTTATT-GATAAAACGGA-----AAAGTTTTTTATCCAGGAGAGACTC----GT-CCCT-------G--TTTTATAGATGATAATTGAT-AGTAGA----TTCTCCAGAATTT-GTAACACAGTATTTTATTT--ATAAATTGA--CC--AATTTTTTCTCCAGCGAGAACTT--GTACCCTGATTTTTATATAATAAAACTGACAAAGATT-TTCTTCAGGAGAACTCGTACCCT
gi|10 : accATCA-A--AATTTCAC-TTTTCTATACTGTATACCC-ATCT-TTTG-GATAGCAAAACT-TGTCCTATTCAAAAATGTTTTAAT-------------G-TCCATT--ACTCCTCGCAACACGCG-TGCCTTTT---CCTACACTGGAAGTG-----------AAGgata
gi|11 : TTTATGATAAA-TTTTAAT-C-AGATTAA-CTCGGTG-TCA-AAA-TTTTAATTCCAGCATGACACG----GTTTTTTTTACAGAAAAAT-CATAGAAATGA-CTTTTTTTCTTTTAGGAGAAC
gi|12 : -TTTCCGACG-TAGATTT--CATA-TT-G-CC-AAATATT--GGACAACGTCAAT-CA--ATTTTGACCT-AGAT--TT-TGA--TTGCCGT-TT-GCCATTG-CTC-----AACCAGTTAGTTTT-ATGTT
gi|13 : cG-TCA-AAA-TTTTGATTCCAGCATGACACG----TTTTTTCTC-CAGAAATAT-GATATAAATGACATTTTTTTCTTTTAGGAAAACTCATA-CCCAGATTTCTATTag
gi|14 : tTATATGCAGCAGAC--CCTTGTTCC--A-GTTTTTAAAAATAA-----CA---TGTATGAAGTTAAA-TGTCATAGGt
gi|15 : C---GAGTTTTACTGGAGAGAAAACACAACTTTCTCGTTTca
gi|16 : TTTTATCAA-TAAAATCTGGGTACG--AGTT
gi|2 : gacaTTTCGCTGCCAGCGCTTTCCGACGT-AAATTTT-CAAA-TTTG-CCCAGA-ATT--GCA-A-CGTCAA---A--AATTTGACGTAAGAA--ATCTGT--ATGACGT-TTAGCC-T---TCCGGGACAAC--GTTATTTT-CATGTTTGCTGAACAGTACAG-GCACATGCGCTCTTTTCCTC-TGCGGCTGTGCGCTT-TAATAAGAG-GATTCTGTATTTTAATTAATCCATTGATTGGGAATGTTGG-AGCGTGTACAC-TTGTACCAAAtt
gi|2 : TACAC-TTGTACCAAA-ATATATCCTTCTA-AAGTTTATGTTGAATTTTTTTTAACAC-GTAACTTTCATATAACAGTAAAAATATAATGTACGGG-ATAGTAAGCAACTATTTTTTTTATATTTGATTAGTTTTGATCTAAAATGTACGTTATAGAACTGTACGTATGATG-TTATACCATTTTTACACatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaccagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|2 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgCCAGAAAG-TGATTTTATTT--TGTTTTTACATGTGA-CCATTCATATTTACCCGTTCGAGATAAAAATTTA-AATGAACCG-CACATCGTTCTTCATTTAGTTGCAGAACCGCCCATCCCAGTTCTGTTAGCTGAATCGCCATCGCGCGTAAAAACGAATTCACAT---ACTCAATA-GTAGTAGCATATATGCAGC-GATGACCTTGTTTCTTATGGCTTTAAAAGTAA-----CAC--TGT-TGAAGTTAAA-TGT--CAAGGCA-TGAAAAATCATACAAATTT-ACTTTTTCTATACT-TACA-CT-ATTTATCAGTGATTACAAAACTCTGTCCTGCTC-AAAATGTTTTAATAATTAGTCTCA-TGATCCATTGCACTCCTCGCAACAAGCGCTGCCTTTT---CCTACACTGGAAGTGAAGCTTCTACCAAGTTCCCCCGGAGAAAATGTTTCGTCAATTTTAATCAA-AGAA-ACTGGGTTTCTGAGTTCTCCTGGAAAAAAACTTTGTTTTC-ATTTTTATCAATTAAAAT-TGGGTACG--AGTTCcagaaagtgattttattttgtttttacatgtgaccattcatatttacccgttcgagataaaaatttaaatgaaccgcacatcgttcttcatttagttgcagaaccgcccatcccagttctgttagctgaatcgccatcgcgcgtaaaaacgaattcacatactcaatagtagtagcatatatgcagcgatgaccttgtttcttatggctttaaaagtaacactgttgaagttaaatgtcaaggcatgaaaaatcatacaaatttactttttctatacttacactatttatcagtgattacaaaactctgtcctgctcaaaatgttttaataattagtctcatgatccattgcactcctcgcaacaagcgctgccttttcctacactggaagtgaagcttctaccaagttcccccggagaaaatgtttcgtcaattttaatcaaagaaactgggtttctgagttctcctggaaaaaaactttgttttcatttttatcaattaaaattgggtacgagttc
gi|3 : tttcgctgccagcgctttccgacgtaaattttcaaatttgcccagaattgcaacgtcaaaaatttgacgtaagaaatctgtatgacgtttagccttccgggacaacgttattttcatgtttgctgaacagtacaggcacatgcgctcttttcctctgcggctgtgcgctttaataagaggattctgtattttaattaatccattgattgggaatgttggagcgtgtacacttgtaccaaaatatatccttctaaagtttatgttgaattttttttaacacgtaactttcatataacagtaaaaatataatgtacgggatagtaagcaactattttttttatatttgattagttttgatctaaaatgtacgttatagaactgtacgtatgatgttataccatttttacaAAGAGAACTCATG-CCC---TT-----------TTTTTTCCCAGGA-AAACTCGTACTTC-GATTTCTATTTGA-ATAATGTGCAAAGTTTTTTTTTTCTCCGGAAGAACTCATATC-CA-A-ATGTCTATGACA-GA--AATTA--C-------AAAGTTT-----TTC---TCCAGGAGAAC----TG-ATC-CA-GA-TTTATCAGATAAAGTTAAATGACCAAG-TTTTTCACCATGAGA-ACTCCTTAGTGACCTATTAATAA--TTTTATA-ATAAAAATTGACAAACAGATTTCTTCTCCAAAACTCAGT-A-CCA-GAT---ATTG--ATG---TGGT-AC---AATCTTGCTCCAG-GAGAAGCT--GCACTCT-ATTTTT
gi|4 : aactcgtacccTTAGACTTGCAATT-GTGTTTTTGTTTTGCCAATAATTACAATAC-GTGAGAACATGAATCTTCATAAAACAACAATGTTCGATTCTAATGCAATCTCGATGTGATACGATA-GTA-AAGATTGT-GGTAAAGATAATT-AGC-TAAAATAAACCATGT-AAGATGTAGTAGACATTTTTATGATAAATTTTTAATAC-AGATTAAG----GCGATCA-AAA-TTTTGATTCCAGCATGGCACG----GTTTTTCTC-CAGAAATAT-ctggatacgag
gi|5 : T-----TA----TCCAGGACAAC-TCGTA--CC-CA-GAATTTATT-GATAAAATTGN-----NNNNNNNNNNNNNNNNNNNN-TTTT----CTACCCT-------GATTTTTATA-AT-AAAATTTAT-AATGAT-TTCTTCTGGAGAACTC-GT-ACCCA-TATTTCTTTTTGGTAAAATG---ACTTAAGTTTTTCTTCAG-GAGAACTCATGTTCCAAGAT----AT-TGTCGGG-T--ACGA----T-TTCTCCAGGAGAACTCGTACCCT
gi|5 : AGAACTC-GT-ACCCA-GA------------AAATAGGGTAC--GAGTT---CTCCTG-GAGAAATC--GTACCC-GA---CAATATCTTGGAAC--ATGA--GTTCTCCTGAAGAAAAACTattttctgggtacgagttctc
gi|6 : ttatccaggacaactcgtacccagaatttattgataaaattgnnnnnnnnnnnnnnnnnnnnnttttctaccctgatttttataataaaatttataatgatttcttctggagaactcgtacccatatttctttttggtaaaatgacttaTTTTTTTTCTGTCAGTTTATAAAAGT-ACA----TGGGAGAAATGTAGCGTATG--AATTCTGAAAAAGGAAAAAAACTCTTT---TGTC-AATGTCTATGTATTTAAA--GTGGTTTACTGTGAGTTCTACTGGAGAGAAAACAAAACTTTCTCGTTTTCGTTTTATTAAAAAc
gi|7 : gaTTTCGCTGCCAACG-TTTTGAATGT-AAATTTC-CAAG-TT-G-CC-AAA-ATT--GCA-A-CGTCAA--AATTAATTTTACGTAAGAA--AT-TGT--ATGACGT-TT-GC-------TC-----AAC--GTTATTTTTCATGTTTA-TGA-C-GTACAG-GCACATGT--TCTTTCTCTC-TGCG-CTGTG-GCCTAATACAAGAtt
gi|8 : TTTGCTGCCAACG-TTTTGAATGTAAAATTTC-CAAAGTT-GGCC-AAA-ATTTCGCA-AACGTCAAATTA--AATTTTACGTAAGAA---T-TGT--ATGACGTGTT-GC-------TC-----AA---GTATTTTTTCATGTTTA-TGGGC-GTACAG-GCACATGT--TCTTTCTCTCTTGCG-CTca
gi|9 : cTTTTTGTCTAGGAAAACTCGTACC-----TATTTTTGTAACATGATGAATGAGAT-------AAACTTTATTGTTTAGGGTTTAGGAAAAC-TTGTA--CC-CATAATTTTAT--GACAGAAATGA-----CA-GTTTTTTCTCCAGGAGA-ACTT----GTAACCT-------A--TTTtgg