lowQualScore : 111111111111 111111111111111
lowQualScore : 44444444444 8888888888 22 1 11 1 11 44444444 111 111 333333333 111 111 2222222222222 111 1111 1111 222222 111 1 1 11 1 11 66666666666666 11 1 111111111111 11 222222 555555555555555 1 1 444444444444 1 11 1 333 222222222 1 1 22 22222 11 1 1 1 1
lowQualScore : 33333333333 0 3 1 1 9 6 3333333333 2 2 33 5 3 00 5 33 2 6 2 11111111 4 2 6 2 6 111 6 2 99 444 8 8 8 222222222 999 444 5 6 2222222222222 6 6 111 5555 2222 8 333333 3 444 7 5 0 2 33 7 3 33 0 33 3 11111111111111 33 3 0 666666666666 33 888888 1 888888888888888 0 6 6 3 111111111111 1 5 0 8 8 6 6 99 99 8 3 2 5 5 8 111 8 444444444 3 3 0 7 33 11111 7777 11 8 8 2 6 6 2 0 3 0 3 3 6
lowQualScore : ........... . . . . . . .......... . . .. . . .. . .. . . . ........ . . . . . ... . . .. ... . . . ......... ... ... . . ............. . . ... .... .... . ...... . ... . . . . .. . . .. . .. . .............. .. . . ............ .. ...... . ............... . . . . ............ . . . . . . . .. .. . . . . . . ... . ......... . . . . .. ..... .... .. . . . . . . . . . . . .
lowQualScore : 55555555555 7 2 2 0 0 0 5555555555 5 5 00 7 7 22 5 88 2 0 2 77777777 0 5 0 5 0 777 7 2 44 000 0 0 0 000000000 888 000 0 7 5555555555555 7 7 777 8888 7777 0 000000 0 888 8 4 0 2 88 0 2 88 0 88 2 00000000000000 88 2 5 000000000000 88 888888 2 333333333333333 0 0 0 2 000000000000 0 8 0 0 0 0 0 55 00 0 2 3 0 7 0 000 0 888888888 2 0 0 0 00 88888 2222 00 0 0 5 5 0 5 0 3 7 3 3 0
consensus : ATTTCCGANTCCTNGTCCATAATCTATTTTTAGCATACTCAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCAAACTTTGGGGAATGAAACTGTTTCCANTTTTCGAATTTTAACC-CGCATTCATAACGTCGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGC--CATATGAAGGGCACTAGGTC----C---TTNCNAATCTACAAACNTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTACTTTATTTT---TT-G-C-AAC---------TCTC--NTAT---ATACCCAGT-TTTACA-------CGTAT-GCCTTAAGGCATATGTTT-AACAC---CTACAT--TAGTTGC--CATCTGAAA-TC------TTACGTAACAA--CCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT---GTAA----AACCCG--TATAT------CCTGCTACACCACGATAATTT---------T-TTTTTAA-TTCTTTTGTTTTGCAATACTC------------CTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTT-CTGGACA--TGCG-CTGGGGTTTCATATNAACGAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATT-CGGC-TCGTTTTA--ATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTTCT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC-TTCCAAT-TCCTCGACCGT-GGGGACTTTAGA-TTCTAAATTCA
Reference ( gi|1 ) : ATTTCCG-TTTTCGGTCCATGATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAGACCATTGATCGTGTTTA---T------AATGAAATTGTTTCCACTTTTTGAATTTTAACC-TGCATTCATAACATTGTAATAAATCCCCGGGACCCTTATAAAAAAAACCCGCTAGCGGT--CATATGAAGGACACCAAGTC----C---TTTCCAATCTATAAACGTATTCAAGTGATCATGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATCTCTTTATTTT---TT-G-C-AAC---------TCTC--ATAT---ATACCCAGT-TTTACA-------CGTA--GCCTTAAGGCATATGTTT-AACAC---CTACAT--TAGTTGC--CATCTGAAA-TC------TTATGTAACAA--CCTCAGCATGTTAATAATCTGACAAGTTATT-GATATTACACATAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------ATCGT--AAGGAATTGAATTGTTTTAGCATTTTGTAACATCAACCCG--TATAT------CCTGCTACACCACGATATTTTTTTTTTTAAT-TTTTTAA-TTCCTTTGTTTTGTAATAGTC------------CTATTTATGTCTTTCCCAGGGAT-TTTT-ATTGAAATTTAGGCGTCTCTTTTCCGATTGTTTTGTT-TTGGACA--TGCG-CTGGGGTTTCATATCAATGAGAATGGGTTCATGAGGCATAGGAT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGA-T-CGGC-TCGTTTTA--TTTGTTGGGCAATGGGATTCACCAGTACTATCTTAGGCTCAACTTGTTCACCTTTTCCCTTCT--GCGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGAGCTCTGAAGTGGTC-TTTCAAT-TCCTCGACCGT-GGGGACTTTAGA-TTCTAAATTTA
gi|11 : ATTTCCG-ATTCTTGTC-ATAATCTATTTTTAGCATACTTAATTATACA
gi|14 : ttttgtttgttttgctttgttatgactcactactccggccgatcatgcccattcagctcggagcactttcgtgtcccgatacagtcTTTCTGATTCTTG--CCATGCTCTATTTTTAGCAT-CTCAATTACACACGGACACAATTTAAACCAT
gi|7 : gtactttcgtgtctgatacagtcgATAATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAACTGTTTCCACTTTTTGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTAT-AAAAAAACCCGCTAGCGGT--CATAAGAAGGGCACTAAGTC----C---TTACGAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCCC-GATCTT
gi|9 : ATCTATTTTTAGCATACACACCTGAACACGAACAAGATTGACACCATTGATCGTGTTCAAACTTTGGGGAATGAAATTGTTTTCAGTTTTCCAAGTTTAACC-AACTTTCATAACGGTGCATCAAATCCCCAGGTCCCTTA-GAGAAAAACCCGGTAGCGGT--CATATGAAAGACATTAGGcg
gi|8 : AATTTTAACCGCGCATTCATAACATCGTACTAAATCCCC
gi|12 : AAATCCCCCGGACCCTTATAGAAAAA-CCCGCAAGCGGC--CATATGAAGGGCACTAGGTTGGCACAAGGTTCCAATCTACAAACTTATTCAAGCGATCATGGACATTTAC---CATCTGAGAGTCCTT-CATCTTTATGcaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtccttacatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|8 : CCTTATAGAAAAA-CCCGCTAGCGGCGCCATATGAAGGGCACTAGGTC----C---TT
gi|3 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntTTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATTAATTTCTTTATTTT---TT-GGC-AAC---------TCTC--TTAT---ATACCCAGT-TTTACA-------CGTA--GCCTTAAGGCATATGTTT-AACAC---CTACAT--TAGTTTC--CATCTGAAA-TC------TTACGTAACA---CCTCAACATGTTACTAATCTTAAAAGCTATT-GATACTACACTTAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGAAATTGAATTGTTTAAGCA----G-------AACCCG--TATAT------CCTGCTACATCGCAATAAATTC--------T-TTTTTAA-TTCTTTTGTTTTGCAATACTC------------CTAATTTTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTT-TTGGACA--TGCG-CTGGGGTTTCATATAAACGAGAATGGGTTAATGGGACATAGGCT-GACCCTCCTTTTTCA-TTCGCTT-ACATCCGATT-CGGC-CCGTTTTAATTCTGT--GGCAATGGGTCTCA-CAGTTCTATCTTAGACTCAAATT-CTCACTTTTTCCCTTCT--GAGCTACAATCCAGTAACGATAGGGTGGCAGGTCCTTTCCAATTGG-CTGGGCTCTGAAGTGGTCTTTTCCATATTCTCAACCGT-GGGGACTTTAGA-TTCTAAATTCacatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|10 : CAAGCGATCATGGAAACTTAC---CATCTGATAGTCCTT-CCTCTTTATGAATCACTTTATTTT---TT-G-C-AAC---------TCTC--GTAT---ATACCAAGT-TTTACA-------CATCTTGCCTTAAGGCATATGTTT-AAGAC---CTACAT--T--------CATCTGAAA-GT------TTACGTAAAAA--CGTCAACATTTTACTAATCTGATAAtgttcttcttaaataaagtgtacagtaatactagtgtt
gi|2 : ATCATGGAAACT-AC---AATCTGAGAGTCCTGGCATCTCTATGAATTACTTTATTTT---TTTG-CCAAC---------TCT----TAT---ATAGCCAGTGTTTACA-------CGTA--GCCTTAAGGCATATGTTT-AA-AC---CTACAT---AGTTTCTCCATCTGAAA-TC------TTACGTAACAA--CCTCAACATGTTCCTAATCTGACCAATTATTTGATTCTACA-AT-GCTT-AAACGGCTGAAAAGTTTGTATACTACCATA-TTTT-------------GTCGTTAAGGGAATTGAATTG-TTTAGCA-----TAA----AACCCGTATATAT------CCTGCTACACCACGATAATT----------T-TTTTTAA-TTCTTTTGTTTTGCAATACTC------------CTATTGCTGTCTTTCCCACGGATGTGTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTCTTGGACAT-TGCG-CTGGGGTTGCATATAACTGAGAATGGG-TCATGAGGCATAGGCT-GGCCCTCCTTTTTCATTTCGCTTCACAATCGATT-CGGCTTCGTTTTA--ATTCTT-GGCAAT-GGACTCA-CAGTTCTATCTTAGACTCAACTTTTTCACCTTTTCCCTTCTTCGAGCTACAATCCA-T-ACG--AGGT-GG-AGGTCCTTT-CAATTGGCCTGGGCTCT-AAGTGGTC-TTCCAAT-TCCTCGACCGTGGGGGACTTTAGATTTCTAAA
gi|8 : CTTACATGCATCTGAAAGTCCTT-CGTCTTTATGAATTATTTTATTTT---TT-G-C-AAG---------TCTC--CTTT---ATACCCAGT-TTTACA-------CATcattcatcgcttcttaaataaagtgtacagttacattgttttgaggagaggtgaggaggaaaagagggaggaggagggaaaagagggag
gi|4 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtcTTTCTCTATTTTGTCTT-G-C-TACGAGAATGGATCTCCAATATTAAATACC--GT-TTTGTAATATAATTGAA--GCTTTAAG-CAACTCTTT-AAAAC---CTACAT--TTGTTGT--CACCTGAAAATCGCTGCATGATATATCTGTGCTTCACTGTGTTATCAATCTAACAAGTTATT-GATATTGTACGTGTCTCTAAA--TCTAGAAAG-TTGTATA--ACTAGATTTTTTATTACTATTATTGTCAT--AAGGCATTTAATCGTTTAATCATTTTATAACACCGACCCA--TATATGTTTATCCTGCAACTCTACGAAAA----------AATATTTTGAA-TTATTTTGCTTCACAATAATCAAATCAAGACTTCTATTTATGCCTTTCACAT--AT-TTTTCATTGGAATTTAGACGTCTCATTCGTGATTGCTTTGTA-ATGGACA--TGTAATTTGAGTTTCGCATTAA----ATTTGGTTCAATTGGCA-AGGCTTGGTCCTCTTTTTTTA-TTTGCTTCACATCAGA-TGCAGC-TAGTTTTA--ATACTTTTGCAATAGGACTCACCAGTTTTATCTTAGGCTCAACTTTCTCACCTTTTCCCTTA--------ACGAGCT-----CG--AGAA-GG-GGGTCCTTTCCAATTGGTCTGGACTATGAAGTGGTC-CTTTAA
gi|2 : atcccccattttttAGG-TTTAAA-------CATAT-GCCTTAAGGC-TACGTGTAAACACTGGCTATATAAGAGTTGG--CA
gi|5 : atcatggaaactacaatctgagagtcctggcatctctatgaattactttattttttAAGGCATATGTTT-AACAC---CTACAT--TAGTTGC--CATCTGAAA-TC------TTACGTAACAA--CCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAACG-TCGTATA--ACCGTATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT-----------AACTCG--TATAT------CCTGCTCCACCACGGCAATTTacatagtttctccatctgaaatcttacgtaacaacctcaacatgttcctaatctgaccaattatttgattctacaatgcttaaacggctgaaaagtttgtatactaccatattttgtcgttaagggaattgaattgtttagcataaaacccgtatatatcctgctacaccacgataattttttttaattcttttgttttgcaatactcctattgctgtctttcccacggatgtgttattggaatttatgcgtctctttcccgattgttttgttcttggacattgcgctggggttgcatataactgagaatgggtcatgaggcataggctggccctcctttttcatttcgcttcacaatcgattcggcttcgttttaattcttggcaatggactcacagttctatcttagactcaactttttcaccttttcccttcttcgagctacaatccatacgaggtggaggtcctttcaattggcctgggctctaagtggtcttccaattcctcgaccgtgggggactttagatttctaaacattcatcgcttcttaaataaagtgtacagttacattgttttgaggagaggtgaggaggaaaagagggaggaggagggaaaagagggag
gi|13 : T-TTTTTAAATTCTTTTGTTTTGCAATATTC------------CTAGTTATATCTTTCCCATGGAT-TTTT-GTCGGAATTTCGACGTCTCTTTCCCGATTGTTTTGTT-CTGGACaaagaaaaaaaaattgttttgcaatactcctatttctttcgttcccagggatttttattggaatgtaggcgtctatgtcccggttgttttgttctggacatgcgctggggtttcatatcaatgagaatgggttcatgaggcataggctggccctcctttttcattcgcttcacatccgattcggctcgttttaattcttgggcaatgggattcacgagttcgatcttaggttcaactttcttccctttctccttctgagctacaatccagtaaccaggggaggtcctt
gi|5 : ttTTGTTTTGCAATACTC------------CTATTTCTTTCGTTCCCAGGGAT-TTTT-ATTGGAATGTAGGCGTCTATGTCCCGGTTGTTTTGTT-CTGGACA--TGCG-CTGGGGTTTCATATCAATGAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATT-CGGC-TCGTTTTA--ATTCTTGGGCAATGGGATTCACGAGTTCGATCTTAGGTTCAACTTTCTTCCCTTTCTCCTTCT--GAGCTACAATCCAGTAACC--A-GG-GG-AGGTCCTT
gi|6 : aaggcatatgtttaacacctacattagttgccatctgaaatcttacgtaacaacctcaacatgttactaatctgacaagttattgatactacacatagctctaaagctgaaacgtcgtataaccgtatttttgtcgtaaggaattgaattgtttaagcataactcgtatatcctgctccaccacggcaatttaaagaaaaaaaaaTTTGTT-CTGGACACATGCG-CTGGGGTTTCATATCAATGAGAATGGGTTTATGAGGCATGAGCT-GGCCCCCCTTTTTCA-TTCGCTTCACATCCGA-TTCGGC-TCGTTTTA--ATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTTCT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC-TTCCAAT-TCCACAACCGT-GGGGACTTTAGA-TTCTAAATTC
gi|19 : ggaatttgtttacactgtttacatttccattgtccttccacattttccgtcaaacagatggggcattggccaAACGAGAATGGGTTCATGAGGCATAGACT-GGCCtgttcttcttaaataaagtgtacagtttatagtattgttgaaatatgagaagacctcaaagttgacatcctttatatagtatagaggaggaggaggaggagga
gi|18 : ATGAGAATGGGTTCATGAGACATAGGCT-GATCCTCCTTTT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): GCGGTCTGATAGACCATTCTCTTTTTTTTCTTTTCAATTATGACTCACTACTCCGGTCGAGTATGCCCATACTGCTCAACGCACTTTC
Unaligned ( gi|16 ): GTCAAGGGGGTCGGTTTGTGCACCCTACACTACTACAGCACAATAATTTTATTTTTAATTCTTTTGTT
Unaligned ( gi|17 ): CAAAGTTGACATCCTTTATATAGTATATAGAAGAGGAGGAGGAGGGGGA
Alignments
lowQualScore : 2222 8888888888 11 1 11 22222222 111 111 222222222 111 111 555555555 22222222 11 11 4444444444444 11 888888888888888 111 111111 222222222222222 22222222222 333333333333 11 11 1 1 11
lowQualScore : 1 7777 6 0 0 5555555555 0 1 0 00 2 2 0 0 44 0 11 88888888 1 1 1 0 000 5 0 4 111 6 6 6 666666666 222 111 2 6 444444444 6 3 2 99 6 6 33333333 8 3 6 11 8 11 0 4444444444444 11 6 555555555555555 000 999999 999999999999999 77777777777 0 444444444444 1 3 6 6 5 55 6 1 6 5 6 6 6 1 6 99 99 2 3 99 6 6 3 11 8 2 0 0 33
lowQualScore : . .... . . . .......... . . . .. . . . . .. . .. ........ . . . . ... . . . ... . . . ......... ... ... . . ......... . . . .. . . ........ . . . .. . .. . ............. .. . ............... ... ...... ............... ........... . ............ . . . . . .. . . . . . . . . . .. .. . . .. . . . .. . . . . ..
lowQualScore : 0 0000 7 8 8 7777777777 7 0 7 22 0 0 2 2 00 6 00 88888888 0 0 0 7 000 7 4 0 777 7 7 7 777777777 555 777 5 7 444444444 7 5 5 22 7 7 33333333 0 8 4 00 0 00 8 0000000000000 00 0 888888888888888 222 222222 000000000000000 11111111111 7 222222222222 0 7 7 7 7 88 7 0 2 0 7 7 7 0 7 22 22 5 2 22 7 7 2 00 0 5 0 0 88
consensus : ATTTCCGATTCCTGGTCCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCA---T----TAACA-CAACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAACGAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
Reference ( family-3827 ) : ATTTCCGANTCCTNGTCCATAATCTATTTTTAGCATACTCAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCAAACTTTGGGGAATGAAACTGTTTCCANTTTTCGAATTTTAACC-CGCATTCATAACGTCGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGC--CATATGAAGGGCACTAGGTC----C---TTNCNAATCTACAAACNTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTACTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCA---T---GTAA----AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATNAACGAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|1 : ATTTCCGTTTTC-GGTCCATGATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAGACCATTGATCGTGTTTA---T------AATGAAATTGTTTCCACTTTTTGAATTTTAACC-TGCATTCATAACATTGTAATAAATCCCCGGGACCCTTATAAAAAAAACCCGCTAGCGGT--CATATGAAGGACACCAAGTC----C---TTTCCAATCTATAAACGTATTCAAGTGATCATGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATCTCTTTATTTT---TT-G-C-AAC---------TCTCA--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTATGTAACA-------ACCTCAGCATGTTAATAATCTGACAAGTTATT-GATATTACACATAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------ATCGT--AAGGAATTGAATTGTTTTAGCATTTT---GTAACATCAACCCG--TATAT------CCTGCTACACCACGATAT-TTTTTTTTTTAAT-TTTTTAA-----------TTCCTTTGTTTTGTAATA------------GTCCTATTTATGTCTTTCCCAGGGAT-TTTT-ATTGAAATTTAGGCGTCTCTTTTCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATCAATGAGAATGGGTTCATGAGGCATAGGAT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGA-TCGGC-TCGTTTTATTTGTTGGGCAATGGGATTCACCAGTACTATCTTAGGCTCAACTTGTTCACCTTTTCCCTT--CT--GCGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGAGCTCTGAAGTGGTC--TTTCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTTA
gi|10 : CAAGCGATCATGGAAACTTAC---CATCTGATAGTCCTT-CCTCTTTATGAATCACTTTATTTT---TT-G-C-AAC---------TCTCG--TAT---ATACCAAGT-TTTACACATCTT-------GCCTTAAGGCATATGTTTAAGACCTACATT--------CATCTGAAA-GT-TTACGTAAAA-------ACGTCAACATTTTACTAATCTGATAA
gi|11 : ATTTCCGATTC-TTGTC-ATAATCTATTTTTAGCATACTTAATTATACA
gi|12 : ttttgtttgttttgctttgttatgactcactactccggccgatcatgcccattcagctcggagcactttcgtgtcccgatacagtcAAATCCCCCGGACCCTTATAGAAAAA-CCCGCAAGCGGC--CATATGAAGGGCACTAGGTTGGCACAAGGTTCCAATCTACAAACTTATTCAAGCGATCATGGACATTTAC---CATCTGAGAGTCCTT-CATCTTTATG
gi|13 : -TTT---------T-TTTTAAA-----------TTCTTTTGTTTTGCAATA------------TTCCTAGTTATATCTTTCCCATGGAT-TTTT-GTCGGAATTTCGACGTCTCTTTCCCGATTGTTTTGTTC-TGGAC
gi|14 : TTTCTGATTCTTG--CCATGCTCTATTTTTAGCAT-CTCAATTACACACGGACACAATTTAAACCAT
gi|16 : gtactttcgtgtctgatacagtcgACCC---TACA--------CTACTACAGCACAATAA-TTT---------TATTTTTAA-----------TTCTTTTGTT
gi|18 : gtcaagggggtcggtttgtgcATGAGAATGGGTTCATGAGACATAGGCT-GATCCTCCTTTT
gi|19 : AACGAGAATGGGTTCATGAGGCATAGACT-GGCC
gi|2 : ATCATGGAAACT-AC---AATCTGAGAGTCCTGGCATCTCTATGAATTACTTTATTTT---TTTG-CCAAC---------TCT----TAT---ATAGCCAGTGTTTACACGTA---------GCCTTAAGGCATATGTTTAA-ACCTACAT-AGTTTCTCCATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTCCTAATCTGACCAATTATTTGATTCTACA-AT-GCT-TAAACGGCTGAAAAGTTTGTATACTACCATA-TTTT-------------GTCGTTAAGGGAATTGAATTGTTT-AGCA--------TAA----AACCCGTATATAT------CCTGCTACACCACGATAA--TT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTGCTGTCTTTCCCACGGATGTGTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTCTTGGACAT-TGCG-CTGGGGTTGCATATAACTGAGAATGGG-TCATGAGGCATAGGCT-GGCCCTCCTTTTTCATTTCGCTTCACAATCGATTCGGCTTCGTTTTAATTCTT-GGCAAT-GGACTCA-CAGTTCTATCTTAGACTCAACTTTTTCACCTTTTCCCTT--CTTCGAGCTACAATCCA-T-ACG--AGGT-GG-AGGTCCTTT-CAATTGGCCTGGGCTCT-AAGTGGTC--TTCCA-ATTCCTCGACCGTGGGGGACTTTAGATTTCTAAACATTCA
gi|3 : TTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATTAATTTCTTTATTTT---TT-GGC-AAC---------TCTCT--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTTC--CATCTGAAA-TC-TTACGTAACA--------CCTCAACATGTTACTAATCTTAAAAGCTATT-GATACTACACTTAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGAAATTGAATTGTTTAAGCA----------G----AACCCG--TATAT------CCTGCTACATCGCAATAAATTC---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTAATTTTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATAAACGAGAATGGGTTAATGGGACATAGGCT-GACCCTCCTTTTTCA-TTCGCTT-ACATCCGATTCGGC-CCGTTTTAATTCTGTGGCAATGGGTCTCA-CAGTTCTATCTTAGACTCAAA-TTCTCACTTTTTCCCTT--CT--GAGCTACAATCCAGTAACGATAGGGTGGCAGGTCCTTTCCAATTGG-CTGGGCTCTGAAGTGGTCTTTTCCATATT-CTCAACCGT-GGGGACTTTAGA-TTCTAA--ATTCAtcgcttcttaaataaagtgtacagttacattgttttgaggagaggtgaggaggaaaagagggaggaggagggaaaagagggag
gi|4 : TTTCTCTATTTTGTCTT-G-C-TACGAGAATGGATCTCCAATATTAAATACC--GT-TTTGTA-ATA-TAATTGAAGCTTTAAG-CAACTCTTTAAAACCTACATTTGTTGT--CACCTGAAAATCGCTGCATGATATATCTGTGCTTCACTGTGTTATCAATCTAACAAGTTATT-GATATTGTACGTGTCTCTAAA--TCTAGAAAG-TTGTATA--ACTAGATTTTTTATTACTATTATTGTCAT--AAGGCATTTAATCGTTTAATCA---TTTTATAACACCGACCCA--TATATGTTTATCCTGCAACTCTACGAAAA-AAT---------A-TTTTGAA-----------TTATTTTGCTTCACAATAATCAAATCAAGACTTCTATTTATGCCTTTCACAT--AT-TTTTCATTGGAATTTAGACGTCTCATTCGTGATTGCTTTGTAA-TGGACA--TGTAATTTGAGTTTCGCATTAA----ATTTGGTTCAATTGGCA-AGGCTTGGTCCTCTTTTTTTA-TTTGCTTCACATCAGATGCAGC-TAGTTTTAATACTTTTGCAATAGGACTCACCAGTTTTATCTTAGGCTCAACTTTCTCACCTTTTCCCTTAAC---GAGCT------------CG--AGAA-GG-GGGTCCTTTCCAATTGGTCTGGACTATGAAGTGGTC--CTTTA-Atgttcttcttaaataaagtgtacagtaatactagtgtt
gi|5 : atcccccattttttAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAACG-TCGTATA--ACCGTATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCA---T-----------AACTCG--TATAT------CCTGCTCCACCACGGCAA-TT----------------TAAAGAAAAAAAAATT-----GTTTTGCAATA------------CTCCTATTTCTTTCGTTCCCAGGGAT-TTTT-ATTGGAATGTAGGCGTCTATGTCCCGGTTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAATGAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGATTCACGAGTTCGATCTTAGGTTCAACTTTCTTCCCTTTCTCCTT--CT--GAGCTACAATCCAGTAACC--AGGG-G--AGGTCCTT
gi|6 : TTTGTTC-TGGACACATGCG-CTGGGGTTTCATATCAATGAGAATGGGTTTATGAGGCATGAGCT-GGCCCCCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCACAACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|7 : ggaatttgtttacactgtttacatttccattgtccttccacattttccgtcaaacagatggggcattggccaATAATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAACTGTTTCCACTTTTTGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATA-AAAAAACCCGCTAGCGGT--CATAAGAAGGGCACTAAGTC----C---TTACGAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCCC-GATCTTtgttcttcttaaataaagtgtacagtttatagtattgttgaaatatgagaagacctcaaagttgacatcctttatatagtatagaggaggaggaggaggagga
gi|8 : AATTTTAACCGCGCATTCATAACATCGTACTAAATCCCCcg
gi|8 : CCTTATAGAAAAA-CCCGCTAGCGGCGCCATATGAAGGGCACTAGGTC----C---TTACcaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtccttacatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|8 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntCTTACATGCATCTGAAAGTCCTT-CGTCTTTATGAATTATTTTATTTT---TT-G-C-AAG---------TCTCC--TTT---ATACCCAGT-TTTACACATatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|9 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtcATCTATTTTTAGCATACACACCTGAACACGAACAAGATTGACACCATTGATCGTGTTCAAACTTTGGGGAATGAAATTGTTTTCAGTTTTCCAAGTTTAACC-AACTTTCATAACGGTGCATCAAATCCCCAGGTCCCTTAGAG-AAAAACCCGGTAGCGGT--CATATGAAAGACATTAGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCGGTCTGATAGACCATTCTCTTTTTTTTCTTTTCAATTATGACTCACTACTCCGGTCGAGTATGCCCATACTGCTCAACGCACTTTC
Unaligned ( gi|17 ): CAAAGTTGACATCCTTTATATAGTATATAGAAGAGGAGGAGGAGGGGGA
Alignments
lowQualScore : 33 5555555555 11 1 11 22222222 111 111 222222222 111 111 555555555 22222222 11 11 4444444444444 11 88888888888888888 111 111111 222222222222222 22222222222 333333333333 11 11 1 1 11
lowQualScore : 88 00 0 0 2222222222 0 00 0 0 44 0 11 88888888 1 0 000 5 0 1 111 6 6 6 666666666 222 111 2 6 444444444 6 3 2 99 6 6 33333333 8 3 6 11 8 11 0 4444444444444 11 6 77777777777777777 000 999999 999999999999999 77777777777 0 444444444444 1 3 6 6 5 55 6 5 99 5 6 6 6 1 6 99 99 2 3 99 6 6 3 11 8 2 0 0 33
lowQualScore : .. .. . . .......... . .. . . .. . .. ........ . . ... . . . ... . . . ......... ... ... . . ......... . . . .. . . ........ . . . .. . .. . ............. .. . ................. ... ...... ............... ........... . ............ . . . . . .. . . .. . . . . . . .. .. . . .. . . . .. . . . . ..
lowQualScore : 00 33 8 8 7777777777 7 22 2 2 00 6 00 88888888 0 7 000 7 4 0 777 7 7 7 777777777 555 777 5 7 444444444 7 5 5 22 7 7 33333333 0 8 4 00 0 00 8 0000000000000 00 0 88888888888888888 222 222222 000000000000000 11111111111 7 222222222222 0 7 7 7 7 88 7 2 22 0 7 7 7 0 7 22 22 5 2 22 7 7 2 00 0 5 0 0 88
consensus : ATTTCCGATTCTTG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----T----AACA-C-AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
Reference ( family-3827 ) : ATTTCCGATTCCTGGTCCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----T----AACA-C-AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|1 : ATTTCCGTTTTC-GGTCCATGATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAGACCATTGATCGTGTTTA---T------AATGAAATTGTTTCCACTTTTTGAATTTTAACC-TGCATTCATAACATTGTAATAAATCCCCGGGACCCTTATAAAAAAAACCCGCTAGCGGT--CATATGAAGGACACCAAGTC----C---TTTCCAATCTATAAACGTATTCAAGTGATCATGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATCTCTTTATTTT---TT-G-C-AAC---------TCTCA--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTATGTAACA-------ACCTCAGCATGTTAATAATCTGACAAGTTATT-GATATTACACATAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------ATCGT--AAGGAATTGAATTGTTTTAGCATTTTGT----AACATC-AACCCG--TATAT------CCTGCTACACCACGATAT-TTTTTTTTTTAAT-TTTTTAA-----------TTCCTTTGTTTTGTAATA------------GTCCTATTTATGTCTTTCCCAGGGAT-TTTT-ATTGAAATTTAGGCGTCTCTTTTCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTCATGAGGCATAGGAT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGA-TCGGC-TCGTTTTATTTGTTGGGCAATGGGATTCACCAGTACTATCTTAGGCTCAACTTGTTCACCTTTTCCCTT--CT--GCGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGAGCTCTGAAGTGGTC--TTTCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTTA
gi|10 : CAAGCGATCATGGAAACTTAC---CATCTGATAGTCCTT-CCTCTTTATGAATCACTTTATTTT---TT-G-C-AAC---------TCTCG--TAT---ATACCAAGT-TTTACACATCTT-------GCCTTAAGGCATATGTTTAAGACCTACATT--------CATCTGAAA-GT-TTACGTAAAA-------ACGTCAACATTTTACTAATCTGATAA
gi|11 : ATTTCCGATTCTTG--TCATAATCTATTTTTAGCATACTTAATTATACA
gi|12 : ttttgtttgttttgctttgttatgactcactactccggccgatcatgcccattcagctcggagcactttcgtgtcccgatacagtcAAATCCCCCGGACCCTTATAGAAAAA-CCCGCAAGCGGC--CATATGAAGGGCACTAGGTTGGCACAAGGTTCCAATCTACAAACTTATTCAAGCGATCATGGACATTTAC---CATCTGAGAGTCCTT-CATCTTTATG
gi|13 : -TTT---------T-TTTTAAA-----------TTCTTTTGTTTTGCAATA------------TTCCTAGTTATATCTTTCCCATGGAT-TTTT-GTCGGAATTTCGACGTCTCTTTCCCGATTGTTTTGTTC-TGGAC
gi|14 : TTTCTGATTCTTG--CCATGCTCTATTTTTAGCAT-CTCAATTACACACGGACACAATTTAAACCAT
gi|16 : gtactttcgtgtctgatacagtcgACCC---TACA--------CTACTACAGCACAATAA-TTT---------TATTTTTAA-----------TTCTTTTGTT
gi|18 : gtcaagggggtcggtttgtgcAT-GAGAATGGGTTCATGAGACATAGGCT-GATCCTCCTTTT
gi|19 : AAC-GAGAATGGGTTCATGAGGCATAGACT-GGCC
gi|2 : ATCATGGAAACT-AC---AATCTGAGAGTCCTGGCATCTCTATGAATTACTTTATTTT---TTTG-CCAAC---------TCT----TAT---ATAGCCAGTGTTTACACGTA---------GCCTTAAGGCATATGTTTAA-ACCTACAT-AGTTTCTCCATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTCCTAATCTGACCAATTATTTGATTCTACA-AT-GCT-TAAACGGCTGAAAAGTTTGTATACTACCATA-TTTT-------------GTCGTTAAGGGAATTGAATTGTTT-AGCA-----T----AA-----AACCCGTATATAT------CCTGCTACACCACGATAA--TT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTGCTGTCTTTCCCACGGATGTGTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTCTTGGACAT-TGCG-CTGGGGTTGCATAT-AACTGAGAATGGG-TCATGAGGCATAGGCT-GGCCCTCCTTTTTCATTTCGCTTCACAATCGATTCGGCTTCGTTTTAATTCTT-GGCAAT-GGACTCA-CAGTTCTATCTTAGACTCAACTTTTTCACCTTTTCCCTT--CTTCGAGCTACAATCCA-T-ACG--AGGT-GG-AGGTCCTTT-CAATTGGCCTGGGCTCT-AAGTGGTC--TTCCA-ATTCCTCGACCGTGGGGGACTTTAGATTTCTAAACATTCA
gi|3 : TTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATTAATTTCTTTATTTT---TT-GGC-AAC---------TCTCT--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTTC--CATCTGAAA-TC-TTACGTAACA--------CCTCAACATGTTACTAATCTTAAAAGCTATT-GATACTACACTTAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGAAATTGAATTGTTTAAGCAG----------------AACCCG--TATAT------CCTGCTACATCGCAATAAATTC---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTAATTTTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATAAAC-GAGAATGGGTTAATGGGACATAGGCT-GACCCTCCTTTTTCA-TTCGCTT-ACATCCGATTCGGC-CCGTTTTAATTCTGTGGCAATGGGTCTCA-CAGTTCTATCTTAGACTCAAA-TTCTCACTTTTTCCCTT--CT--GAGCTACAATCCAGTAACGATAGGGTGGCAGGTCCTTTCCAATTGG-CTGGGCTCTGAAGTGGTCTTTTCCATATT-CTCAACCGT-GGGGACTTTAGA-TTCTAA--ATTCAtcgcttcttaaataaagtgtacagttacattgttttgaggagaggtgaggaggaaaagagggaggaggagggaaaagagggag
gi|4 : TTTCTCTATTTTGTCTT-G-C-TACGAGAATGGATCTCCAATATTAAATACC--GT-TTTGTA-ATA-TAATTGAAGCTTTAAG-CAACTCTTTAAAACCTACATTTGTTGT--CACCTGAAAATCGCTGCATGATATATCTGTGCTTCACTGTGTTATCAATCTAACAAGTTATT-GATATTGTACGTGTCTCTAAA--TCTAGAAAG-TTGTATA--ACTAGATTTTTTATTACTATTATTGTCAT--AAGGCATTTAATCGTTTAATCAT----TTTATAACA-CCGACCCA--TATATGTTTATCCTGCAACTCTACGAAAA-AAT---------A-TTTTGAA-----------TTATTTTGCTTCACAATAATCAAATCAAGACTTCTATTTATGCCTTTCACAT--AT-TTTTCATTGGAATTTAGACGTCTCATTCGTGATTGCTTTGTAA-TGGACA--TGTAATTTGAGTTTCGCATTAA-----ATTTGGTTCAATTGGCA-AGGCTTGGTCCTCTTTTTTTA-TTTGCTTCACATCAGATGCAGC-TAGTTTTAATACTTTTGCAATAGGACTCACCAGTTTTATCTTAGGCTCAACTTTCTCACCTTTTCCCTTAAC---GAGCT------------CG--AGAA-GG-GGGTCCTTTCCAATTGGTCTGGACTATGAAGTGGTC--CTTTA-Atgttcttcttaaataaagtgtacagtaatactagtgtt
gi|5 : atcccccattttttAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAACG-TCGTATA--ACCGTATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----------------AACTCG--TATAT------CCTGCTCCACCACGGCAA-TT----------------TAAAGAAAAAAAAATT-----GTTTTGCAATA------------CTCCTATTTCTTTCGTTCCCAGGGAT-TTTT-ATTGGAATGTAGGCGTCTATGTCCCGGTTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGATTCACGAGTTCGATCTTAGGTTCAACTTTCTTCCCTTTCTCCTT--CT--GAGCTACAATCCAGTAACC--AGGG-G--AGGTCCTT
gi|6 : TTTGTTC-TGGACACATGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTTATGAGGCATGAGCT-GGCCCCCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCACAACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|7 : ggaatttgtttacactgtttacatttccattgtccttccacattttccgtcaaacagatggggcattggccaATAATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAACTGTTTCCACTTTTTGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATA-AAAAAACCCGCTAGCGGT--CATAAGAAGGGCACTAAGTC----C---TTACGAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCCC-GATCTTtgttcttcttaaataaagtgtacagtttatagtattgttgaaatatgagaagacctcaaagttgacatcctttatatagtatagaggaggaggaggaggagga
gi|8 : AATTTTAACCGCGCATTCATAACATCGTACTAAATCCCCcg
gi|8 : CCTTATAGAAAAA-CCCGCTAGCGGCGCCATATGAAGGGCACTAGGTC----C---TTACcaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtccttacatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|8 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntCTTACATGCATCTGAAAGTCCTT-CGTCTTTATGAATTATTTTATTTT---TT-G-C-AAG---------TCTCC--TTT---ATACCCAGT-TTTACACATatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|9 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtcATCTATTTTTAGCATACACACCTGAACACGAACAAGATTGACACCATTGATCGTGTTCAAACTTTGGGGAATGAAATTGTTTTCAGTTTTCCAAGTTTAACC-AACTTTCATAACGGTGCATCAAATCCCCAGGTCCCTTAGAG-AAAAACCCGGTAGCGGT--CATATGAAAGACATTAGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCGGTCTGATAGACCATTCTCTTTTTTTTCTTTTCAATTATGACTCACTACTCCGGTCGAGTATGCCCATACTGCTCAACGCACTTTC
Unaligned ( gi|17 ): CAAAGTTGACATCCTTTATATAGTATATAGAAGAGGAGGAGGAGGGGGA
Alignments
lowQualScore : 11 5555555555 11 1 11 22222222 111 111 222222222 111 111 555555555 22222222 11 11 4444444444444 11 88888888888888888 111 111111 222222222222222 22222222222 333333333333 11 11 1 1 11
lowQualScore : 7 88 0 0 2222222222 0 00 0 0 44 0 11 88888888 1 0 000 5 0 1 111 6 6 6 666666666 222 111 2 6 444444444 6 3 2 99 6 6 33333333 8 3 6 11 8 11 0 4444444444444 11 6 77777777777777777 000 999999 999999999999999 77777777777 0 444444444444 1 3 6 6 5 55 6 5 99 5 6 6 6 1 6 99 99 2 3 99 6 6 3 11 8 2 0 0 33
lowQualScore : . .. . . .......... . .. . . .. . .. ........ . . ... . . . ... . . . ......... ... ... . . ......... . . . .. . . ........ . . . .. . .. . ............. .. . ................. ... ...... ............... ........... . ............ . . . . . .. . . .. . . . . . . .. .. . . .. . . . .. . . . . ..
lowQualScore : 3 33 8 8 7777777777 7 22 2 2 00 6 00 88888888 0 7 000 7 4 0 777 7 7 7 777777777 555 777 5 7 444444444 7 5 5 22 7 7 33333333 0 8 4 00 0 00 8 0000000000000 00 0 88888888888888888 222 222222 000000000000000 11111111111 7 222222222222 0 7 7 7 7 88 7 2 22 0 7 7 7 0 7 22 22 5 2 22 7 7 2 00 0 5 0 0 88
consensus : ATTTCCGATTCTCG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----T----AACA-C-AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
Reference ( family-3827 ) : ATTTCCGATTCTTG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----T----AACA-C-AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|1 : ATTTCCG-TTTTCGGTCCATGATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAGACCATTGATCGTGTTTA---T------AATGAAATTGTTTCCACTTTTTGAATTTTAACC-TGCATTCATAACATTGTAATAAATCCCCGGGACCCTTATAAAAAAAACCCGCTAGCGGT--CATATGAAGGACACCAAGTC----C---TTTCCAATCTATAAACGTATTCAAGTGATCATGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATCTCTTTATTTT---TT-G-C-AAC---------TCTCA--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTATGTAACA-------ACCTCAGCATGTTAATAATCTGACAAGTTATT-GATATTACACATAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------ATCGT--AAGGAATTGAATTGTTTTAGCATTTTGT----AACATC-AACCCG--TATAT------CCTGCTACACCACGATAT-TTTTTTTTTTAAT-TTTTTAA-----------TTCCTTTGTTTTGTAATA------------GTCCTATTTATGTCTTTCCCAGGGAT-TTTT-ATTGAAATTTAGGCGTCTCTTTTCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTCATGAGGCATAGGAT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGA-TCGGC-TCGTTTTATTTGTTGGGCAATGGGATTCACCAGTACTATCTTAGGCTCAACTTGTTCACCTTTTCCCTT--CT--GCGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGAGCTCTGAAGTGGTC--TTTCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTTA
gi|10 : CAAGCGATCATGGAAACTTAC---CATCTGATAGTCCTT-CCTCTTTATGAATCACTTTATTTT---TT-G-C-AAC---------TCTCG--TAT---ATACCAAGT-TTTACACATCTT-------GCCTTAAGGCATATGTTTAAGACCTACATT--------CATCTGAAA-GT-TTACGTAAAA-------ACGTCAACATTTTACTAATCTGATAA
gi|11 : ATTTCCGATTCTTG--TCATAATCTATTTTTAGCATACTTAATTATACA
gi|12 : ttttgtttgttttgctttgttatgactcactactccggccgatcatgcccattcagctcggagcactttcgtgtcccgatacagtcAAATCCCCCGGACCCTTATAGAAAAA-CCCGCAAGCGGC--CATATGAAGGGCACTAGGTTGGCACAAGGTTCCAATCTACAAACTTATTCAAGCGATCATGGACATTTAC---CATCTGAGAGTCCTT-CATCTTTATG
gi|13 : -TTT---------T-TTTTAAA-----------TTCTTTTGTTTTGCAATA------------TTCCTAGTTATATCTTTCCCATGGAT-TTTT-GTCGGAATTTCGACGTCTCTTTCCCGATTGTTTTGTTC-TGGAC
gi|14 : TTTCTGATTCTTG--CCATGCTCTATTTTTAGCAT-CTCAATTACACACGGACACAATTTAAACCAT
gi|16 : gtactttcgtgtctgatacagtcgACCC---TACA--------CTACTACAGCACAATAA-TTT---------TATTTTTAA-----------TTCTTTTGTT
gi|18 : gtcaagggggtcggtttgtgcAT-GAGAATGGGTTCATGAGACATAGGCT-GATCCTCCTTTT
gi|19 : AAC-GAGAATGGGTTCATGAGGCATAGACT-GGCC
gi|2 : ATCATGGAAACT-AC---AATCTGAGAGTCCTGGCATCTCTATGAATTACTTTATTTT---TTTG-CCAAC---------TCT----TAT---ATAGCCAGTGTTTACACGTA---------GCCTTAAGGCATATGTTTAA-ACCTACAT-AGTTTCTCCATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTCCTAATCTGACCAATTATTTGATTCTACA-AT-GCT-TAAACGGCTGAAAAGTTTGTATACTACCATA-TTTT-------------GTCGTTAAGGGAATTGAATTGTTT-AGCA-----T----AA-----AACCCGTATATAT------CCTGCTACACCACGATAA--TT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTGCTGTCTTTCCCACGGATGTGTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTCTTGGACAT-TGCG-CTGGGGTTGCATAT-AACTGAGAATGGG-TCATGAGGCATAGGCT-GGCCCTCCTTTTTCATTTCGCTTCACAATCGATTCGGCTTCGTTTTAATTCTT-GGCAAT-GGACTCA-CAGTTCTATCTTAGACTCAACTTTTTCACCTTTTCCCTT--CTTCGAGCTACAATCCA-T-ACG--AGGT-GG-AGGTCCTTT-CAATTGGCCTGGGCTCT-AAGTGGTC--TTCCA-ATTCCTCGACCGTGGGGGACTTTAGATTTCTAAACATTCA
gi|3 : TTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATTAATTTCTTTATTTT---TT-GGC-AAC---------TCTCT--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTTC--CATCTGAAA-TC-TTACGTAACA--------CCTCAACATGTTACTAATCTTAAAAGCTATT-GATACTACACTTAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGAAATTGAATTGTTTAAGCAG----------------AACCCG--TATAT------CCTGCTACATCGCAATAAATTC---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTAATTTTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATAAAC-GAGAATGGGTTAATGGGACATAGGCT-GACCCTCCTTTTTCA-TTCGCTT-ACATCCGATTCGGC-CCGTTTTAATTCTGTGGCAATGGGTCTCA-CAGTTCTATCTTAGACTCAAA-TTCTCACTTTTTCCCTT--CT--GAGCTACAATCCAGTAACGATAGGGTGGCAGGTCCTTTCCAATTGG-CTGGGCTCTGAAGTGGTCTTTTCCATATT-CTCAACCGT-GGGGACTTTAGA-TTCTAA--ATTCAtcgcttcttaaataaagtgtacagttacattgttttgaggagaggtgaggaggaaaagagggaggaggagggaaaagagggag
gi|4 : TTTCTCTATTTTGTCTT-G-C-TACGAGAATGGATCTCCAATATTAAATACC--GT-TTTGTA-ATA-TAATTGAAGCTTTAAG-CAACTCTTTAAAACCTACATTTGTTGT--CACCTGAAAATCGCTGCATGATATATCTGTGCTTCACTGTGTTATCAATCTAACAAGTTATT-GATATTGTACGTGTCTCTAAA--TCTAGAAAG-TTGTATA--ACTAGATTTTTTATTACTATTATTGTCAT--AAGGCATTTAATCGTTTAATCAT----TTTATAACA-CCGACCCA--TATATGTTTATCCTGCAACTCTACGAAAA-AAT---------A-TTTTGAA-----------TTATTTTGCTTCACAATAATCAAATCAAGACTTCTATTTATGCCTTTCACAT--AT-TTTTCATTGGAATTTAGACGTCTCATTCGTGATTGCTTTGTAA-TGGACA--TGTAATTTGAGTTTCGCATTAA-----ATTTGGTTCAATTGGCA-AGGCTTGGTCCTCTTTTTTTA-TTTGCTTCACATCAGATGCAGC-TAGTTTTAATACTTTTGCAATAGGACTCACCAGTTTTATCTTAGGCTCAACTTTCTCACCTTTTCCCTTAAC---GAGCT------------CG--AGAA-GG-GGGTCCTTTCCAATTGGTCTGGACTATGAAGTGGTC--CTTTA-Atgttcttcttaaataaagtgtacagtaatactagtgtt
gi|5 : atcccccattttttAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAACG-TCGTATA--ACCGTATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----------------AACTCG--TATAT------CCTGCTCCACCACGGCAA-TT----------------TAAAGAAAAAAAAATT-----GTTTTGCAATA------------CTCCTATTTCTTTCGTTCCCAGGGAT-TTTT-ATTGGAATGTAGGCGTCTATGTCCCGGTTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGATTCACGAGTTCGATCTTAGGTTCAACTTTCTTCCCTTTCTCCTT--CT--GAGCTACAATCCAGTAACC--AGGG-G--AGGTCCTT
gi|6 : TTTGTTC-TGGACACATGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTTATGAGGCATGAGCT-GGCCCCCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCACAACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|7 : ggaatttgtttacactgtttacatttccattgtccttccacattttccgtcaaacagatggggcattggccaATAATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAACTGTTTCCACTTTTTGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATA-AAAAAACCCGCTAGCGGT--CATAAGAAGGGCACTAAGTC----C---TTACGAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCCC-GATCTTtgttcttcttaaataaagtgtacagtttatagtattgttgaaatatgagaagacctcaaagttgacatcctttatatagtatagaggaggaggaggaggagga
gi|8 : AATTTTAACCGCGCATTCATAACATCGTACTAAATCCCCcg
gi|8 : CCTTATAGAAAAA-CCCGCTAGCGGCGCCATATGAAGGGCACTAGGTC----C---TTACcaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtccttacatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|8 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntCTTACATGCATCTGAAAGTCCTT-CGTCTTTATGAATTATTTTATTTT---TT-G-C-AAG---------TCTCC--TTT---ATACCCAGT-TTTACACATatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|9 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtcATCTATTTTTAGCATACACACCTGAACACGAACAAGATTGACACCATTGATCGTGTTCAAACTTTGGGGAATGAAATTGTTTTCAGTTTTCCAAGTTTAACC-AACTTTCATAACGGTGCATCAAATCCCCAGGTCCCTTAGAG-AAAAACCCGGTAGCGGT--CATATGAAAGACATTAGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCGGTCTGATAGACCATTCTCTTTTTTTTCTTTTCAATTATGACTCACTACTCCGGTCGAGTATGCCCATACTGCTCAACGCACTTTC
Unaligned ( gi|17 ): CAAAGTTGACATCCTTTATATAGTATATAGAAGAGGAGGAGGAGGGGGA
Alignments
lowQualScore : 11 5555555555 11 1 11 22222222 111 111 222222222 111 111 555555555 22222222 11 11 4444444444444 11 88888888888888888 111 111111 222222222222222 22222222222 333333333333 11 11 1 1 11
lowQualScore : 7 0 88 0 0 2222222222 0 00 0 0 44 0 11 88888888 1 0 000 5 0 1 111 6 6 6 666666666 222 111 2 6 444444444 6 3 2 99 6 6 33333333 8 3 6 11 8 11 0 4444444444444 11 6 77777777777777777 000 999999 999999999999999 77777777777 0 444444444444 1 3 6 6 5 55 6 5 99 5 6 6 6 1 6 99 99 2 3 99 6 6 3 11 8 2 0 0 33
lowQualScore : . . .. . . .......... . .. . . .. . .. ........ . . ... . . . ... . . . ......... ... ... . . ......... . . . .. . . ........ . . . .. . .. . ............. .. . ................. ... ...... ............... ........... . ............ . . . . . .. . . .. . . . . . . .. .. . . .. . . . .. . . . . ..
lowQualScore : 3 7 33 8 8 7777777777 7 22 2 2 00 6 00 88888888 0 7 000 7 4 0 777 7 7 7 777777777 555 777 5 7 444444444 7 5 5 22 7 7 33333333 0 8 4 00 0 00 8 0000000000000 00 0 88888888888888888 222 222222 000000000000000 11111111111 7 222222222222 0 7 7 7 7 88 7 2 22 0 7 7 7 0 7 22 22 5 2 22 7 7 2 00 0 5 0 0 88
consensus : ATTTCCGATTCTCG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----T----AACA-C-AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
Reference ( family-3827 ) : ATTTCCGATTCTCG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----T----AACA-C-AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|1 : ATTTCCG-TTTTCGGTCCATGATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAGACCATTGATCGTGTTTA---T------AATGAAATTGTTTCCACTTTTTGAATTTTAACC-TGCATTCATAACATTGTAATAAATCCCCGGGACCCTTATAAAAAAAACCCGCTAGCGGT--CATATGAAGGACACCAAGTC----C---TTTCCAATCTATAAACGTATTCAAGTGATCATGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATCTCTTTATTTT---TT-G-C-AAC---------TCTCA--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTATGTAACA-------ACCTCAGCATGTTAATAATCTGACAAGTTATT-GATATTACACATAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------ATCGT--AAGGAATTGAATTGTTTTAGCATTTTGT----AACATC-AACCCG--TATAT------CCTGCTACACCACGATAT-TTTTTTTTTTAAT-TTTTTAA-----------TTCCTTTGTTTTGTAATA------------GTCCTATTTATGTCTTTCCCAGGGAT-TTTT-ATTGAAATTTAGGCGTCTCTTTTCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTCATGAGGCATAGGAT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGA-TCGGC-TCGTTTTATTTGTTGGGCAATGGGATTCACCAGTACTATCTTAGGCTCAACTTGTTCACCTTTTCCCTT--CT--GCGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGAGCTCTGAAGTGGTC--TTTCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTTA
gi|10 : CAAGCGATCATGGAAACTTAC---CATCTGATAGTCCTT-CCTCTTTATGAATCACTTTATTTT---TT-G-C-AAC---------TCTCG--TAT---ATACCAAGT-TTTACACATCTT-------GCCTTAAGGCATATGTTTAAGACCTACATT--------CATCTGAAA-GT-TTACGTAAAA-------ACGTCAACATTTTACTAATCTGATAA
gi|11 : ATTTCCGATTCTTG--TCATAATCTATTTTTAGCATACTTAATTATACA
gi|12 : ttttgtttgttttgctttgttatgactcactactccggccgatcatgcccattcagctcggagcactttcgtgtcccgatacagtcAAATCCCCCGGACCCTTATAGAAAAA-CCCGCAAGCGGC--CATATGAAGGGCACTAGGTTGGCACAAGGTTCCAATCTACAAACTTATTCAAGCGATCATGGACATTTAC---CATCTGAGAGTCCTT-CATCTTTATG
gi|13 : -TTT---------T-TTTTAAA-----------TTCTTTTGTTTTGCAATA------------TTCCTAGTTATATCTTTCCCATGGAT-TTTT-GTCGGAATTTCGACGTCTCTTTCCCGATTGTTTTGTTC-TGGAC
gi|14 : TTTCTGATTCTTG--CCATGCTCTATTTTTAGCAT-CTCAATTACACACGGACACAATTTAAACCAT
gi|16 : gtactttcgtgtctgatacagtcgACCC---TACA--------CTACTACAGCACAATAA-TTT---------TATTTTTAA-----------TTCTTTTGTT
gi|18 : gtcaagggggtcggtttgtgcAT-GAGAATGGGTTCATGAGACATAGGCT-GATCCTCCTTTT
gi|19 : AAC-GAGAATGGGTTCATGAGGCATAGACT-GGCC
gi|2 : ATCATGGAAACT-AC---AATCTGAGAGTCCTGGCATCTCTATGAATTACTTTATTTT---TTTG-CCAAC---------TCT----TAT---ATAGCCAGTGTTTACACGTA---------GCCTTAAGGCATATGTTTAA-ACCTACAT-AGTTTCTCCATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTCCTAATCTGACCAATTATTTGATTCTACA-AT-GCT-TAAACGGCTGAAAAGTTTGTATACTACCATA-TTTT-------------GTCGTTAAGGGAATTGAATTGTTT-AGCA-----T----AA-----AACCCGTATATAT------CCTGCTACACCACGATAA--TT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTGCTGTCTTTCCCACGGATGTGTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTCTTGGACAT-TGCG-CTGGGGTTGCATAT-AACTGAGAATGGG-TCATGAGGCATAGGCT-GGCCCTCCTTTTTCATTTCGCTTCACAATCGATTCGGCTTCGTTTTAATTCTT-GGCAAT-GGACTCA-CAGTTCTATCTTAGACTCAACTTTTTCACCTTTTCCCTT--CTTCGAGCTACAATCCA-T-ACG--AGGT-GG-AGGTCCTTT-CAATTGGCCTGGGCTCT-AAGTGGTC--TTCCA-ATTCCTCGACCGTGGGGGACTTTAGATTTCTAAACATTCA
gi|3 : TTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATTAATTTCTTTATTTT---TT-GGC-AAC---------TCTCT--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTTC--CATCTGAAA-TC-TTACGTAACA--------CCTCAACATGTTACTAATCTTAAAAGCTATT-GATACTACACTTAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGAAATTGAATTGTTTAAGCAG----------------AACCCG--TATAT------CCTGCTACATCGCAATAAATTC---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTAATTTTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATAAAC-GAGAATGGGTTAATGGGACATAGGCT-GACCCTCCTTTTTCA-TTCGCTT-ACATCCGATTCGGC-CCGTTTTAATTCTGTGGCAATGGGTCTCA-CAGTTCTATCTTAGACTCAAA-TTCTCACTTTTTCCCTT--CT--GAGCTACAATCCAGTAACGATAGGGTGGCAGGTCCTTTCCAATTGG-CTGGGCTCTGAAGTGGTCTTTTCCATATT-CTCAACCGT-GGGGACTTTAGA-TTCTAA--ATTCAtcgcttcttaaataaagtgtacagttacattgttttgaggagaggtgaggaggaaaagagggaggaggagggaaaagagggag
gi|4 : TTTCTCTATTTTGTCTT-G-C-TACGAGAATGGATCTCCAATATTAAATACC--GT-TTTGTA-ATA-TAATTGAAGCTTTAAG-CAACTCTTTAAAACCTACATTTGTTGT--CACCTGAAAATCGCTGCATGATATATCTGTGCTTCACTGTGTTATCAATCTAACAAGTTATT-GATATTGTACGTGTCTCTAAA--TCTAGAAAG-TTGTATA--ACTAGATTTTTTATTACTATTATTGTCAT--AAGGCATTTAATCGTTTAATCAT----TTTATAACA-CCGACCCA--TATATGTTTATCCTGCAACTCTACGAAAA-AAT---------A-TTTTGAA-----------TTATTTTGCTTCACAATAATCAAATCAAGACTTCTATTTATGCCTTTCACAT--AT-TTTTCATTGGAATTTAGACGTCTCATTCGTGATTGCTTTGTAA-TGGACA--TGTAATTTGAGTTTCGCATTAA-----ATTTGGTTCAATTGGCA-AGGCTTGGTCCTCTTTTTTTA-TTTGCTTCACATCAGATGCAGC-TAGTTTTAATACTTTTGCAATAGGACTCACCAGTTTTATCTTAGGCTCAACTTTCTCACCTTTTCCCTTAAC---GAGCT------------CG--AGAA-GG-GGGTCCTTTCCAATTGGTCTGGACTATGAAGTGGTC--CTTTA-Atgttcttcttaaataaagtgtacagtaatactagtgtt
gi|5 : atcccccattttttAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAACG-TCGTATA--ACCGTATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----------------AACTCG--TATAT------CCTGCTCCACCACGGCAA-TT----------------TAAAGAAAAAAAAATT-----GTTTTGCAATA------------CTCCTATTTCTTTCGTTCCCAGGGAT-TTTT-ATTGGAATGTAGGCGTCTATGTCCCGGTTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGATTCACGAGTTCGATCTTAGGTTCAACTTTCTTCCCTTTCTCCTT--CT--GAGCTACAATCCAGTAACC--AGGG-G--AGGTCCTT
gi|6 : TTTGTTC-TGGACACATGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTTATGAGGCATGAGCT-GGCCCCCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCACAACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|7 : ggaatttgtttacactgtttacatttccattgtccttccacattttccgtcaaacagatggggcattggccaATAATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAACTGTTTCCACTTTTTGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATA-AAAAAACCCGCTAGCGGT--CATAAGAAGGGCACTAAGTC----C---TTACGAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCCC-GATCTTtgttcttcttaaataaagtgtacagtttatagtattgttgaaatatgagaagacctcaaagttgacatcctttatatagtatagaggaggaggaggaggagga
gi|8 : AATTTTAACCGCGCATTCATAACATCGTACTAAATCCCCcg
gi|8 : CCTTATAGAAAAA-CCCGCTAGCGGCGCCATATGAAGGGCACTAGGTC----C---TTACcaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtccttacatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|8 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntCTTACATGCATCTGAAAGTCCTT-CGTCTTTATGAATTATTTTATTTT---TT-G-C-AAG---------TCTCC--TTT---ATACCCAGT-TTTACACATatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|9 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtcATCTATTTTTAGCATACACACCTGAACACGAACAAGATTGACACCATTGATCGTGTTCAAACTTTGGGGAATGAAATTGTTTTCAGTTTTCCAAGTTTAACC-AACTTTCATAACGGTGCATCAAATCCCCAGGTCCCTTAGAG-AAAAACCCGGTAGCGGT--CATATGAAAGACATTAGG
blockSeqs : A . AACTTTGGGG GC GA A GC GGCACAAG T ATG G A GTC T G C GAGAATGGA CAA TAA A G TAATTGAA G A T TC A G TATCTGTG T A T CG T CT TATTACTATTATT TA A TTTTATAACACC GTA GTTTAT TTTTA AGAAAAAAAAA ATCAAATCAAGA A T G C T CA A A CT T T T T G C AA TC G A AT T C C TT T C G T AC
blockSeqs : A . T C GA A . C A . . A . . . . . G . C . TT C A T . . . A . G C . . . . . A TAA G . ATTCT . . C C . . . T . T T . . . T A C . . G A . . . T . . C . . .
blockSeqs : A A . . C A . . T . . . . . T . C . . A T G . . . A . A C . . . . . A G A . TTTT . . T C . . . . . C C . . . G G C . . G A . . . C . . . . . .
blockSeqs : G . . . . T . . . . . C . C . . C A G . . . A . . . . . . . . . T G . AATA . . A T . . . . . C C . . . G G . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . . . . TTT . . C G . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . TT . . T .
blockSeqs : . .
blockSeqCons : T**************** TTTT***********
originalCons : ATTTCCGATTCTCG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----T----AACA-C-AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
finalCons : ATTTCCGATTCTCG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT----------------AACCCG--TATAT------CCTGCTACACCACGATAATTTT-----------TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCGGTCTGATAGACCATTCTCTTTTTTTTCTTTTCAATTATGACTCACTACTCCGGTCGAGTATGCCCATACTGCTCAACGCACTTTC
Unaligned ( gi|17 ): CAAAGTTGACATCCTTTATATAGTATATAGAAGAGGAGGAGGAGGGGGA
Alignments
lowQualScore : 11 5555555555 11 1 11 22222222 111 111 222222222 111 111 555555555 22222222 11 11 4444444444444 11 88888888888 111 111111 222222222222222 22222222222 333333333333 11 11 1 1 11
lowQualScore : 7 0 88 0 0 2222222222 0 00 0 0 44 0 11 88888888 1 0 000 5 0 1 111 6 6 6 666666666 222 111 2 6 444444444 6 3 2 99 6 6 33333333 8 3 6 11 8 11 0 4444444444444 11 6 77777777777 000 999999 999999999999999 77777777777 0 444444444444 1 3 6 6 5 55 6 5 99 5 6 6 6 1 6 99 99 2 3 99 6 6 3 11 8 2 0 0 33
lowQualScore : . . .. . . .......... . .. . . .. . .. ........ . . ... . . . ... . . . ......... ... ... . . ......... . . . .. . . ........ . . . .. . .. . ............. .. . ........... ... ...... ............... ........... . ............ . . . . . .. . . .. . . . . . . .. .. . . .. . . . .. . . . . ..
lowQualScore : 3 7 33 8 8 7777777777 7 22 2 2 00 6 00 88888888 0 7 000 7 4 0 777 7 7 7 777777777 555 777 5 7 444444444 7 5 5 22 7 7 33333333 0 8 4 00 0 00 8 0000000000000 00 0 00000000000 222 222222 000000000000000 11111111111 7 222222222222 0 7 7 7 7 88 7 2 22 0 7 7 7 0 7 22 22 5 2 22 7 7 2 00 0 5 0 0 88
consensus : ATTTCCGATTCTCG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCATTTT-TAACA-CAACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
Reference ( family-3827 ) : ATTTCCGATTCTCG--CCATGATCTATTTTTAGCATACTTAATTATACACGGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAATTGTTTCCACTTTTCGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATAGAAAAAACCCGCTAGCGGT--CATATGAAGGGCACTAGGTC----C---TTNCCAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATTNCTTTATTTT---TT-G-C-AAC---------TCTCN--TAT---ATACCCAGT-TTTACACGTA-T-------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT-----------AACCCG--TATAT------CCTGCTACACCACGATAA-TTT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTTNTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTAGGCGTCTCTTTCCCGATTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAC-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|1 : ATTTCCG-TTTTCGGTCCATGATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAGACCATTGATCGTGTTTA---T------AATGAAATTGTTTCCACTTTTTGAATTTTAACC-TGCATTCATAACATTGTAATAAATCCCCGGGACCCTTATAAAAAAAACCCGCTAGCGGT--CATATGAAGGACACCAAGTC----C---TTTCCAATCTATAAACGTATTCAAGTGATCATGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATGAATCTCTTTATTTT---TT-G-C-AAC---------TCTCA--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTATGTAACA-------ACCTCAGCATGTTAATAATCTGACAAGTTATT-GATATTACACATAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------ATCGT--AAGGAATTGAATTGTTTTAGCATTTTGTAACATCAACCCG--TATAT------CCTGCTACACCACGATAT-TTTTTTTTTTAAT-TTTTTAA-----------TTCCTTTGTTTTGTAATA------------GTCCTATTTATGTCTTTCCCAGGGAT-TTTT-ATTGAAATTTAGGCGTCTCTTTTCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTCATGAGGCATAGGAT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGA-TCGGC-TCGTTTTATTTGTTGGGCAATGGGATTCACCAGTACTATCTTAGGCTCAACTTGTTCACCTTTTCCCTT--CT--GCGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGAGCTCTGAAGTGGTC--TTTCA-ATTCCTCGACCGT-GGGGACTTTAGA-TTCTAA--ATTTA
gi|10 : CAAGCGATCATGGAAACTTAC---CATCTGATAGTCCTT-CCTCTTTATGAATCACTTTATTTT---TT-G-C-AAC---------TCTCG--TAT---ATACCAAGT-TTTACACATCTT-------GCCTTAAGGCATATGTTTAAGACCTACATT--------CATCTGAAA-GT-TTACGTAAAA-------ACGTCAACATTTTACTAATCTGATAA
gi|11 : ATTTCCGATTCTTG--TCATAATCTATTTTTAGCATACTTAATTATACA
gi|12 : ttttgtttgttttgctttgttatgactcactactccggccgatcatgcccattcagctcggagcactttcgtgtcccgatacagtcAAATCCCCCGGACCCTTATAGAAAAA-CCCGCAAGCGGC--CATATGAAGGGCACTAGGTTGGCACAAGGTTCCAATCTACAAACTTATTCAAGCGATCATGGACATTTAC---CATCTGAGAGTCCTT-CATCTTTATG
gi|13 : -TTT---------T-TTTTAAA-----------TTCTTTTGTTTTGCAATA------------TTCCTAGTTATATCTTTCCCATGGAT-TTTT-GTCGGAATTTCGACGTCTCTTTCCCGATTGTTTTGTTC-TGGAC
gi|14 : TTTCTGATTCTTG--CCATGCTCTATTTTTAGCAT-CTCAATTACACACGGACACAATTTAAACCAT
gi|16 : gtactttcgtgtctgatacagtcgACCC---TACA--------CTACTACAGCACAATAA-TTT---------TATTTTTAA-----------TTCTTTTGTT
gi|18 : gtcaagggggtcggtttgtgcAT-GAGAATGGGTTCATGAGACATAGGCT-GATCCTCCTTTT
gi|19 : AAC-GAGAATGGGTTCATGAGGCATAGACT-GGCC
gi|2 : ATCATGGAAACT-AC---AATCTGAGAGTCCTGGCATCTCTATGAATTACTTTATTTT---TTTG-CCAAC---------TCT----TAT---ATAGCCAGTGTTTACACGTA---------GCCTTAAGGCATATGTTTAA-ACCTACAT-AGTTTCTCCATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTCCTAATCTGACCAATTATTTGATTCTACA-AT-GCT-TAAACGGCTGAAAAGTTTGTATACTACCATA-TTTT-------------GTCGTTAAGGGAATTGAATTGTTT-AGCATAA---------AACCCGTATATAT------CCTGCTACACCACGATAA--TT---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTATTGCTGTCTTTCCCACGGATGTGTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTCTTGGACAT-TGCG-CTGGGGTTGCATAT-AACTGAGAATGGG-TCATGAGGCATAGGCT-GGCCCTCCTTTTTCATTTCGCTTCACAATCGATTCGGCTTCGTTTTAATTCTT-GGCAAT-GGACTCA-CAGTTCTATCTTAGACTCAACTTTTTCACCTTTTCCCTT--CTTCGAGCTACAATCCA-T-ACG--AGGT-GG-AGGTCCTTT-CAATTGGCCTGGGCTCT-AAGTGGTC--TTCCA-ATTCCTCGACCGTGGGGGACTTTAGATTTCTAAACATTCA
gi|3 : TTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCTT-CGTCTTTATTAATTTCTTTATTTT---TT-GGC-AAC---------TCTCT--TAT---ATACCCAGT-TTTACACGTA---------GCCTTAAGGCATATGTTTAACACCTACATTAGTTTC--CATCTGAAA-TC-TTACGTAACA--------CCTCAACATGTTACTAATCTTAAAAGCTATT-GATACTACACTTAGCTTTAAA--GCTGAAAAG-TTGTATA--ACCATATTTTT-------------GTCGT--AAGAAATTGAATTGTTTAAGCAG-----------AACCCG--TATAT------CCTGCTACATCGCAATAAATTC---------T-TTTTTAA-----------TTCTTTTGTTTTGCAATA------------CTCCTAATTTTGTCTTTCCCACGGAT-TTTT-ATTGGAATTTATGCGTCTCTTTCCCGATTGTTTTGTTT-TGGACA--TGCG-CTGGGGTTTCATATAAAC-GAGAATGGGTTAATGGGACATAGGCT-GACCCTCCTTTTTCA-TTCGCTT-ACATCCGATTCGGC-CCGTTTTAATTCTGTGGCAATGGGTCTCA-CAGTTCTATCTTAGACTCAAA-TTCTCACTTTTTCCCTT--CT--GAGCTACAATCCAGTAACGATAGGGTGGCAGGTCCTTTCCAATTGG-CTGGGCTCTGAAGTGGTCTTTTCCATATT-CTCAACCGT-GGGGACTTTAGA-TTCTAA--ATTCAtcgcttcttaaataaagtgtacagttacattgttttgaggagaggtgaggaggaaaagagggaggaggagggaaaagagggag
gi|4 : TTTCTCTATTTTGTCTT-G-C-TACGAGAATGGATCTCCAATATTAAATACC--GT-TTTGTA-ATA-TAATTGAAGCTTTAAG-CAACTCTTTAAAACCTACATTTGTTGT--CACCTGAAAATCGCTGCATGATATATCTGTGCTTCACTGTGTTATCAATCTAACAAGTTATT-GATATTGTACGTGTCTCTAAA--TCTAGAAAG-TTGTATA--ACTAGATTTTTTATTACTATTATTGTCAT--AAGGCATTTAATCGTTTAATCATTTTATAACACCGACCCA--TATATGTTTATCCTGCAACTCTACGAAAA-AAT---------A-TTTTGAA-----------TTATTTTGCTTCACAATAATCAAATCAAGACTTCTATTTATGCCTTTCACAT--AT-TTTTCATTGGAATTTAGACGTCTCATTCGTGATTGCTTTGTAA-TGGACA--TGTAATTTGAGTTTCGCATTAA-----ATTTGGTTCAATTGGCA-AGGCTTGGTCCTCTTTTTTTA-TTTGCTTCACATCAGATGCAGC-TAGTTTTAATACTTTTGCAATAGGACTCACCAGTTTTATCTTAGGCTCAACTTTCTCACCTTTTCCCTTAAC---GAGCT------------CG--AGAA-GG-GGGTCCTTTCCAATTGGTCTGGACTATGAAGTGGTC--CTTTA-Atgttcttcttaaataaagtgtacagtaatactagtgtt
gi|5 : atcccccattttttAAGGCATATGTTTAACACCTACATTAGTTGC--CATCTGAAA-TC-TTACGTAACA-------ACCTCAACATGTTACTAATCTGACAAGTTATT-GATACTACACATAGCTCTAAA--GCTGAAACG-TCGTATA--ACCGTATTTTT-------------GTCGT--AAGGAATTGAATTGTTTAAGCAT-----------AACTCG--TATAT------CCTGCTCCACCACGGCAA-TT----------------TAAAGAAAAAAAAATT-----GTTTTGCAATA------------CTCCTATTTCTTTCGTTCCCAGGGAT-TTTT-ATTGGAATGTAGGCGTCTATGTCCCGGTTGTTTTGTTC-TGGACA--TGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTCATGAGGCATAGGCT-GGCCCTCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGATTCACGAGTTCGATCTTAGGTTCAACTTTCTTCCCTTTCTCCTT--CT--GAGCTACAATCCAGTAACC--AGGG-G--AGGTCCTT
gi|6 : TTTGTTC-TGGACACATGCG-CTGGGGTTTCATATCAAT-GAGAATGGGTTTATGAGGCATGAGCT-GGCCCCCCTTTTTCA-TTCGCTTCACATCCGATTCGGC-TCGTTTTAATTCTTGGGCAATGGGACTCACCAGTTCTATCTTAGGCTCAACTTTCTCACCTTTTCCCTT--CT--GAGCTACAATCCAGTAACG--AGGG-GG-AGGTCCTTTCCAATTGGCCTGGGCTCTGAAGTGGTC--TTCCA-ATTCCACAACCGT-GGGGACTTTAGA-TTCTAA--ATTCA
gi|7 : ggaatttgtttacactgtttacatttccattgtccttccacattttccgtcaaacagatggggcattggccaATAATCTATTTTTAGCATACTTAATTATACACAGACAAGATTTAAACCATTGATCGTGTTCA---T------AATGAAACTGTTTCCACTTTTTGAATTTTAACC-CGCATTCATAACATTGTACTAAATCCCCGGGACCCTTATA-AAAAAACCCGCTAGCGGT--CATAAGAAGGGCACTAAGTC----C---TTACGAATCTACAAACGTATTCAAGCGATCGTGGAAACTTAC---CATCTGAGAGTCCCC-GATCTTtgttcttcttaaataaagtgtacagtttatagtattgttgaaatatgagaagacctcaaagttgacatcctttatatagtatagaggaggaggaggaggagga
gi|8 : AATTTTAACCGCGCATTCATAACATCGTACTAAATCCCCcg
gi|8 : CCTTATAGAAAAA-CCCGCTAGCGGCGCCATATGAAGGGCACTAGGTC----C---TTACcaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtccttacatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|8 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntCTTACATGCATCTGAAAGTCCTT-CGTCTTTATGAATTATTTTATTTT---TT-G-C-AAG---------TCTCC--TTT---ATACCCAGT-TTTACACATatgcatctgaaagtccttcgtctttatgaattattttattttttgcaagtctcctttatacccagttttacacat
gi|9 : aattttaaccgcgcattcataacatcgtactaaatcccccaagtnnnnnnnnnnnnnnnnnnnnnnnnntccttatagaaaaacccgctagcggcgccatatgaagggcactaggtcATCTATTTTTAGCATACACACCTGAACACGAACAAGATTGACACCATTGATCGTGTTCAAACTTTGGGGAATGAAATTGTTTTCAGTTTTCCAAGTTTAACC-AACTTTCATAACGGTGCATCAAATCCCCAGGTCCCTTAGAG-AAAAACCCGGTAGCGGT--CATATGAAAGACATTAGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GCGGTCTGATAGACCATTCTCTTTTTTTTCTTTTCAATTATGACTCACTACTCCGGTCGAGTATGCCCATACTGCTCAACGCACTTTC
Unaligned ( gi|17 ): CAAAGTTGACATCCTTTATATAGTATATAGAAGAGGAGGAGGAGGGGGA