lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444 22222222 1 1 22222 55555555555 5555555 1 6666666666666666666666666666666666666666 1 222 6666 2222222222222 11111 11111 222222222 22222 444444444444444444444 111111111 3333333 1111111 111 333333333333333333333333 000000000000000000000000000000000000000000000000000000000000 22222222 333333333333333333333333333333333333333333 222222222222222222222 1111111111111 3333333333333 999999999999999999999999999999999999999999999999 777777777777777777777777777777777777777777777777 1111111111111111111 333333333333333333333333333 1111 1 111111111111 222 444444 11111 3333
lowQualScore : 1 6 1 6666666 22222222 0 6 88 7 55555 00000000000 1 11 0 7 3 2222222 8 8 2 2 0 0 8888888888888888888888888888888888888888 3 000 1 4444 5555555555555 0 3 66 888 5 55 99999 55555 5 0 5 999999999 11111 5 55 666 444444444444444444444 777777777 888 0 2 9999999 1111111 999 4 777777777777777777777777 0 111111111111111111111111111111111111111111111111111111111111 3333 5555 88888888 1 333 1 777777777777777777777777777777777777777777 11 11 11 2222 555555555555555555555 3333 22 1 11 222222 1 9999999999999 7777777777777 1 22 66666666 888888888888888888888888888888888888888888888888 33 1 1 333333333333333333333333333333333333333333333333 44444444444 0 0 0 0 11 111 222 0 44 22222 222 1 9999999999999999999 222 44444444 11 111 66 0 11 11 11 4444444444444 111 0 222222222222222222222222222 11 1 1 4444 222 22 0 22 000000000000 2 3 111 9999 777777 555555 44444 1111
lowQualScore : . . . ....... ........ . . .. . ..... ........... . .. . . . ....... . . . . . . ........................................ . ... . .... ............. . . .. ... . .. ..... ..... . . . ......... ..... . .. ... ..................... ......... ... . . ....... ....... ... . ........................ . ............................................................ .... .... ........ . ... . .......................................... .. .. .. .... ..................... .... .. . .. ...... . ............. ............. . .. ........ ................................................ .. . . ................................................ ........... . . . . .. ... ... . .. ..... ... . ................... ... ........ .. ... .. . .. .. .. ............. ... . ........................... .. . . .... ... .. . .. ............ . . ... .... ...... ...... ..... ....
lowQualScore : 0 0 0 8888888 00000000 0 0 55 0 00000 00000000000 0 77 7 0 7 5555555 8 8 5 0 5 2 1111111111111111111111111111111111111111 3 000 7 0000 4444444444444 1 2 99 888 0 22 11111 44444 0 1 0 444444444 11111 0 55 222 000000000000000000000 999999999 888 1 2 4444444 1111111 999 4 999999999999999999999999 7 999999999999999999999999999999999999999999999999999999999999 9999 0000 88888888 3 777 3 000000000000000000000000000000000000000000 33 33 33 0000 888888888888888888888 1111 44 0 44 999999 0 2222222222222 5555555555555 6 22 00000000 111111111111111111111111111111111111111111111111 44 2 2 000000000000000000000000000000000000000000000000 22222222222 9 8 8 8 11 444 222 8 66 00000 777 5 0000000000000000000 111 44444444 00 333 11 8 11 11 11 8888888888888 666 9 777777777777777777777777777 77 2 2 4444 777 11 8 33 000000000000 4 1 666 7777 222222 000000 11111 7777
consensus : NNATTCGAAATCTTAAA--TCGT-AAGGGGGAGT-GGGT-AACGAGTNTTTGTCCTT-T-T-CACGGGTCCAGTA-ATT--ATTAGTTCGATTGATCGCTCAAATATCGANTTAGCTCG------AAGATTTTGTCAAACNATTGTTGTACATACGT-----GACTAGGTATTAAA-CGACAA-ATAC-GACGATGGAA-AAT---CAGTACTTTT----GTTGAATAAANG-AA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---NGGAGC-TG--G-AAAATAA-CATTTTCTNG---CCATTTTTAC-G-ACGAA-TAAA-ATTCTTAC-G-T-----AA-----T--CG----TCATN-----AAAAAA---TCATGTAATTTGGGGAC-TNC-AGAATTTC--NAATTGTT-TNT-TTAA------A-N-T-T---G------GAAAGAACAC-ACCTTTAA---CGTTT-TA-CATAACTA--CACTT-GTTATAA-------T-----AAC----TAA----CTCG-T-----T-ATAA---CG-AG---ATAATT-----A--AT-T---TC-------G-T-T-A--TA--A--CG--AGAT----ANTT------AA-C--------TC----GT--TA-T--AAC------GA-G-----ATNN----TTAAC----TC--GTT-AT-AAC--GAG--------AT-----ACTA------AT-TA---ACTC---GTC-GTTA----T-A---C--GAGAT-AATT-AACTCG--------TT-AT--AA---CGAG---A-T----ACT--------A--T-----------A-A-C-T-CG--T---TAT---A-AC-G-----A---G-AT-------------A---C-T---AA--------CTCG--T---TA-T-A--A--C--GAG-------------A---T-A--AT-TAA-C--T-----------C--GTTAT--A-A-CG---AG---TTA--ACTT-TTT----T----TGTTA-TTTT-TT-CTT----TTTT------TTC-AA---AA-----TGAGCCCA-GCCGGCTTTCGTA
Reference ( gi|4 ) : GTATTTAAGATTTTAAAAATCGTTAAGTGGAAAG-GGGT-AATGAGCGTATGTCCTT-TATGCACGGGTCCAGTAAATTGAATTAATTTGATTGATCGATCAAATATCGACTTAGCTC-------AACATTTTGTGAAACCATCGTTGCACATACAT-----GATTAGGTATTAAAACGACAAGATACGGATGATGGAA-AAT---CAGTATTTTTCAGTGTTGAATAAATA-AA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--G-AAAATAA-CATTTTCTTT---TCATTTTTGT-C-ACGAA-TAAA-ATTCTTAC-G-T-----A------T--CG----TCATC-----AGCAAA---TCATGTAATTTAGGGATATGC-AGAATTTC--TAATTGTTATCT-TTAA------A-A-T-T---G------GAGAGAACAC-ACCTTTAA---CGTCT-TA-CATAATTA--CACTTTGGTATAA-------T-----AAC----TAA----CTC--T-----T-ATAA---CG-AG---GCAATT-----A--AT-T---TC-A-----G-T-T-C--TA--A--CG--AGAT----ACTT------AG-A--------TC----GT--TA-T--AAC------GA-G-----ATTT----TTAAG----TC--G---AT-AAC--GAG--------AT-----GCTA-----CATGTA---ATTT---GTT-GTTA----T-A---C--GAGAT-AATT-AACTCG--------AT-A---AA---CGAG---G-T----ACTGC-----AAG-T-----------A-A-C-T-CG--T---TAT---A-AT-G-----A---G-AT-------------A---C-T---AA--------CTCG--T---TG-T-A--A--C--GAG-------------A---T-A--AC-CAA-A--T-----------A--GTTAT--A-A-CG---TG---TTA--ACTT-TTT----T----TGTTA-TTTT-TTGCTT----TTTT------TTC------AA-----TGAGCCCATGCGGGCTTTCGTA
gi|22 : ATTTGAAATTTTAAA--TTGT-AAGGGGAAGT-GGGT-AACGAGTTTTTGTCCTT-
gi|8 : gtaaggctaaacttcaacatcctggaaaagtgtggaagggggggggggagagaacacgtaaactagacatctttactcaaTTCAAAATCTTAAA--TCGT-AAG-GGTGAGTAGGT-GACGAGTGTTCGTCCTTCTCTCCACGGGTCCAATA---T--ATCAGTTCAACTGATTGCCCAAATATCGATGTAACTTGAAATCGAAGATATTGTCCAACAGGTGTTGTATATATGTAAATTGACTAGATATCAAACC------ATA---AT--TTGAC-AAT-----GTATTTTT----GTTGAATAAAAG-AA-------A-ATATC--GCTAC---CTTTTCA-TTT-GTT---AGGAGC-TA--G-AAAATAA-CATTTTCTTG---TTATATTTAT-G-ACGAC-TAGA-ATTCTTAC-G-T-----AA-----T--CG----TCATC-----ATCAAAAAATTATGTAACTAGGGGATTTAA-ATAATTTC--TAAGAGTT-TTG-TGAA------A-T-T-T---G------AAAAGAACAA-CCCCTTAA---TGTTT-T--CATAGATA--CA------------------------AGC----TAA----CTAG-T-----T-ATAA---CG-AG---ATAATT---------------------------------TA--C--CG--AGAT----ACT--------G-AC-------TC----GT--TT-T--AAA------GA-G-----ATAT----TAAAAAT--TCCTT---AT-AAC--GAT--------AT-----ctcat
gi|1 : aaacTTTGAAATCTTAAA--TTGT-AAGGGGGAGT-GGGTCAACGAGTTTTTGTCCTT-
gi|7 : taaatcattacaaagacgtatcttacggaacctcttgttccttgaaatctttaaatcaagtgtagtgcaaatttagaattacatgtacttaaggaataaaagaaaaatcataagtaaacgttacaagaaactgaaaatgatttaatctagattttttcaagtttataaactccgtgatattttgtagaaatacatgaaatataaatcacaatatttgaataccttttgtcgtttggtattggtcaacagaaagaagctactcttgtcttagtcagcccgcatttacatttataacagagataaaatattttttgtaattgaaggctataactgaaaacgaagtataatgccagtaataattttcttgccagacaaatatctgctgtatgtacatggttatataccttcaatgaatggttgatcatttattggtgaattgacaaagcagttcgcgtacagtgtactactgttttttcaaagtgagagtgggtggcggcgcgcagtcttacgagaagtgtgatgttaaaattgtccataatactcgacaggcaaaatacaagagaaattgtaatatctaagtaaggctaaacttcaacatcctggacagtgttggaaaggggagggggggggggggggaacaaaaaagccacaaaaaactagaaaatctttatttactcgaacAATCGT-AAGGGGGAGT-GGGT-AACGAGTGTTTGTCCTT-C---------TC------AT---ATTAGTTCAATTGATTGCTCAAAGATCGAATAAGCTTG------AAGATTTTGTCAAACCATTGTTGTACATA----------TT-----TT-----GACAA-----------TGGAA-CAT---CAGTACTTTT----GTTGA-------------------ATA-------AC---CTTTTCA-T-------------------------------ATTT-CTTG---CCATTTTTAC-G-ACGAA-TGAA-TTTCTTAC-G-T-----A------T--TGGTTATCATA-----AAAAAA---TCATGCAATTTGGGGGT-T-------------------TTATGT-TTAA------ATT-T-T---A------GAAAGAACAA-CCCCTTAA---CGTTT-T--CATA------------GAT------------------AC----TAA----CTCG-T-----T-ATAA---CG-AG---ATAATT-----A--AC-T---C--------G-T-T-A--TA--C--CG--AGAT----AC-T------AA-C--------CC----GT--TA-T--AAC------GA-GTTA--ATTT----TTctcatttcagttctgtgattgccaaagatcgagtaagcttgaagatgttgtacatattttgacaatggaacaatattcagtacttttgttgaataaagaaatctaattatagatcgtcgccttttcattttctttgagctgcggaaaataacattttctagccatttttacgacaaataaataatcttacttaatgcgtttatcataagaaaataatgtaatttggggacttccaagaatttcattatgttctgtttaaattttcaatagaaaaaaaccctttaacgttttcata
gi|13 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcGTCCTT-TATGCACGGGTCCAGTAAATTGAATTAATTTGATTGATCGATCAAATATCGACTTAGCTC-------AACATTTTGTGAAACCATCGTTGCACATACAT-----GATTAGGTATTAAAACGACAAGATACGGATGATGGAA-AAT---CAGTATTTTTCAGTGTTGAATAAATA-AA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAAATAA-CATTTTCTTT---TCATTTTTGT-C-ACGAA-TAAA-ATTCTTAC-G-TG----A------T--CG----TCATC-----AGCAAA---TCATGTAATTTAGGGATATGC-AGAATTTC--TAATTGTTATCT-TTAA------A-ATT-T---G------GAGAGAACtaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|12 : GCTCG------AAGATTTTGTCAAACAATTGTTG----TACAT-----GACTAG---TTAA--CGATAATATTTTGACAATGGAA-GAT---CAGTACTCTT----GTTGAATAT-TAGAA-------ATAAATC--GTCAC---CTTTTCA-TTT-CTT---AGGAGC-TG--G-AAA-TAA-C------------------TTGTACGACGAA-TAAA-ATTCTTAC-G-T-----AATCT--T--CA----TCATA-----AAAAAA---TC--GTATTTTGGGGATTTAA-AGAATTTC--AAATTGTT-TGT-TTAA------A-T-T-T---T------TAAAAAA-ACGACCC----------CT-TA--------A--CGCTTTCATA-GA-------T-----A-C----TAA----CTC-------------------------------------------------------G-T-T-A--TA--T--CG--AGAT----ACTT------AA-G--------TT----GT--TA-T--AAC------GA-G-----ATAA----TTAAT----TC--GTT-AT-AAC--GAG--------AT-----
gi|1 : GACAATGGAACAATATTCAGTACTTTT----GTTGAATAAAGA-AATCTAATTATAGATC--GTCGC---CTTTTCA-TTT-TCT---TTGAGC-TGCGG-AAAATAA-CATTTTCTAG---CCATTTTTAC-G-ACAAA-TAAATAATCTTAC-T-T-----AATGCGTT--TA----TCATA-----AGAAAA---TAATGTAATTTGGGGACTTCCAAGAATTTCATTA--TGTTCTGT-TTAAATTTTCA-A-T-A---G------AAAAAAAC----CCTTTAA---CGTTT-T--CATAatataac
gi|2 : taaatcattacaaagacgtatcttacggaacctcttgttccttgaaatctttaaatcaagtgtagtgcaaatttagaattacatgtacttaaggaataaaagaaaaatcataagtaaacgttacaagaaactgaaaatgatttaatctagattttttcaagtttataaactccgtgatattttgtagaaatacatgaaatataaatcacaatatttgaataccttttgtcgtttggtattggtcaacagaaagaagctactcttgtcttagtcagcccgcatttacatttataacagagataaaatattttttgtaattgaaggctataactgaaaacgaagtataatgccagtaataattttcttgccagacaaatatctgctgtatgtacatggttatataccttcaatgaatggttgatcatttattggtgaattgacaaagcagttcgcgtacagtgtactactgttttttcaaagtgagagtgggtggcggcgcgcagtcttacgagaagtgtgatgttaaaattgtccataatactcgacaggcaaaatacaagagaaattgtaatatctaagtaaggctaaacttcaacatcctggacagtgttggaaaggggagggggggggggggggaacaaaaaagccacaaaaaactagaaaatctttatttactcgaactttgaaatcttaaattgtaagggggagtgggtcaacgagtttttgtccttctcatttcagttctgtgattgccaaagatcgagtaagcttgaagatgttgtacatattttTGGAACAATATTCAGTACTTTT----GTTGAATAAA-G-AA-------ATAGATC--ATCGC---C-TTTCA-TTTACTTGTGAGGAGCGTG--G-AAAATAACCATTTGTGAG---CCATTAGTAC-G-ACGAA-GAAA-CTTCAATC-GTT-----A------T--CG------ATC-----AAAAAA---TCATG-AATTTAGCGAC-TTC-TCTATTTC--AAATTGTTTCTT-TTAA------A-A-TAT---GTTCAATTAGAAAA-AG-ACCTTTAA---CGTTTCTA-CCACACTA--CACATCGTTATAA----------------------------CC--G-----T-A-AA---CA-AG---ATAATT-----A--AT--------------G-TAT-G--TA--A--CGCAGGAT----AATT------AACA--------TC----GTG-TA-T--AAC-------A-G-----ATAA----TTAAC----TC--GT--AT-TGC--GGGAAATTATCAT-----GTT------CATATAGAGACAT---GAT-GATAGAGGT-G---CTGGAAACGAATT-AATTCT--------AT-A---AA---CGA-------------CAC-----AAA-T-----------ATA-CGTGCG--T---TAT---A-AC-GAGTATA---G-AT-------------A---G-T---AATACGAGATTTCG--T---TA-TCA--AGGC--GAG-------------A---T-A--AT-CAATC--T-----------C--GTTAT--A-A-CG---AG----TA--ATTT-TTA----T----T
gi|14 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggaccttaaattgtaagggggggggggcgggatggtgcagtggtaacgatctgtgtccttctcattttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggacT---CAGTACTTTT---TTTTTAATAAAAG-AA-------ATAGATC--GTCGC---CTTTTCA-TTT-CTT---TGGAGC-TG--G-AAAATAA-TATTTTCTAG---CCATTTTTAC-G-ACGAA-TAAA-TTTCTTAC-C-TA----A------T--CG----TTATCATTAAAAAAAA---TCATGTAATTTGGGGAC-TTC-A-AGTTTC--AAATTGTTCTGT-TTAA------A-T-T-TTCAA------TAGAAAA-AC--CCTTAAA---CGTTT-T--CA----CA--CAC------------------------AC----TAA----CTCG-T-----T-ATAA---CG-AG---ATAATT-----A--Aa
gi|5 : -------ATATTTCTAGTCACACTTTTTTCAATTT-TTT---TGGTGC--G--G-AAAATAA-TAATTT--TTAGGCCATTTTTAC-G-ACGAAAGAAA-AATCTTACCG-CTTAAAA------TGATA----TCATA-----AAAAAT---TCA-GTAATTTGGGGAC-TCA-AGAATTTT--TAA--ATT-CCTGTTAA------A-A-T-T---TT-----GAAAGAAAACCA----TAA---C-TTT-CA-TACACTTA---ACTC-GTTATAAGA-----T-----AAT----TAA----TTCGTTCAGCAT-ATAAA--CG-AG---ATAAT------A--AC-T------------G-T-T-A--TA--A--AG--AGAT----ACT
gi|19 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacgaacttgaaatcttaattgtaagggggaagggtacgagtttttattgtccttctcattttagtgcagttgattgctcaagatcgataagttgaagagctgtacatactttgaaaatgtacaatatagtattttgaatgaatgatgtcgttcattttttggagcggatactT-TTAA------A-T-T-TT--G------GAAAGAACGC-CCCT--AA---CGTTT-TA-AAAGAT-------------------------------AC----TAA----CCC--G-----T-TTAT---CC-AG---ATAATT-----A--AA-T---T--------G-T-T-A--TATAA--CG--AGAT----AC-T------AA-C--------TC----GT--TA-TAAAAC------GA-GTTATTATTT----TTaactgtaataagatacgaacacgtataacggaaattaactcgtataaacagtaattttttttttcaaaaatg
gi|9 : tgAT-ACTTCTAA---CG-----A-AATAACTA---ACTC-GTTATAACGAGG--T-----AGA----TAA----CTTG-T-----T-ATAA---TG-A------AATTCTAGTA--AT-T---TT-AAATTCG-T-T-G--TA--A--CA--AATT----ATTC------AA-T--------TC----GT--TA-T--AAT------TA-T-----ATAA----TTAAC----TC--T---AT-AAC--GAG--------AT-----A---------AT-TA---ACTT---GTT-A-TA------A---C--GAGAT--GTT-AACTCtttttttattatcatttttttaatgagcccagccggctttcgtaa
gi|9 : ttgcaaagaaaacattacgtacatgtcatcatacgatagctacaacttgttctagataagaattacatgtaatcttacatttcgggaataattaagagaaggctcatgaacgttttcatagtactgcgttataacgagttctttatctcgttctaacgagTTTAAATTCGTTG-TAACA-AATTATTCAATTCGTTATAA-------TTATATAAT----TAA----CTC--------T-ATAA---CG-AG---ATAATT-----A--AC-T---T--------G-T-T-A--TA--A--CG--AGATGTTAACTC------------------TC----GT--TA-T--ACCTAGTTAGA-T-----ATTT----TTtcgttatacctagttagatattttttttttttatacttaggcctctttcaaaaacgagcccagccaactttcgca
gi|29 : ttgcaaagaaaacattacgtacatgtcatcatacgatagctacaacttgttctagataagaattacatgtaatcttacatttcgggaataattaagagaaggctcatgaacgttttcatagtactgcgttataacgagttctttatctcgttctaacgagatacttctaacgaaataactaactcgttataacgaggtagataacttgttataatgaaattctagtaatTAA---CG-----A-AATAAT-G--CACTT-GTTATAA-------CGAGACAAT----TAA----ATCG-T-----T-ATAT---CT-CG---ATAATT-----A--AC-T---CT---------T-T-A--CA--A--CG--AGAG----AACT------AA-C--------CC----GT--TA-T--AAC------GA-A-----ATtttttttatacttaggcctctttcaaaaacgagcccagccaactttcgca
gi|17 : tcgtta-TA-C-TAACT---CGTTTTG--ATGA-------G-----ATC----TAAA---CTCA-T-----T-ATAA---CG-AG---ATAATT-----A--A--T---TC-A-------T-T--------A--CG--AGAT----A-TT------AA-C--------TG----GT--TA-A--AAC------GA-G-----Aa
gi|35 : acgagataaataactctttagaatgagaA--CATCTCGTTATAA-------C-----GACATCATAT----CTCC-T-----T-ATAATGACG-AGCTAGTAATT-----ATAAT-C---TC-G-----A-T-T----TA--A--CG--AGAT----ACTaaactaaatcgctagaacgtttaatcgaagtacttaatgtactgataaccggtactgtttaga
gi|9 : agatGGTATAACGAGAGTT-----AAC-----AT----CTCG-T-----T-ATAA---CA-AG---TTAATT-----A---T-C---TC-------G-T-T-A--TA------G--AGTT----AATT------AT-A--------TA----AT--TA-T--AAC------GA-------ATTGA---ATAAT----TT--GTT-AC-AAC--GA---------ATTTAAAATTA-----C-TAGA---ATT-----TC-ATTA----TAA---C--AAGTT-ATCT-ACCTCG--------TT-AT--AA---CGAGTTAGTT----ATTTCGTTAGAAG-T-----------A-T-C-T-CG--T---TAG---A-AC-G-----A---G-ATA------------A---A-G---AA--------CTCG--T---TA-T-A--A--C--Gtagtga
gi|18 : ttgcaaagaaaacattacgtacatgtcatcatacgatagctacaacttgttctagataagaattacatgtaatcttacatttcgggaataattaagagaaggctcatgaacgttttcatagtactgTATAA-------TG----AAT----TAATTATCTCG-T-----T-ATAA-------G---G-AATT-----A--AT-TATATC-------G-T-T-A--TA--A--TG--GGCT----AATC------AT-A--------TC----GT--TA-T--AGC---------G-----ATTTAG--TTATC----TG--G---TT-AAC--GAG--------tagttagatattttttttttttatacttaggcctctttcaaaaacgagcccagccaactttcgca
gi|7 : agatagcaaactcgatataacgaaggtttaactttaactattaacttaatattagaaaatatctaaAA-------A-----AAT----TAA----CTCG-T-----T-ATAA---CG-GG---TTAGT---------AT-C---TC-G-----G-T---A--TA--A--CG--AGTT----AATT------AT-C--------TC----GT--TA-T--AAC------GA-G-----acg
gi|34 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatagatactaaAA-------A-----AAT----TAA----CTCG-T-----T-ATAA---CA-AG---CTAGTT--------AT-C---TC-------G-T-T-A--TA--A--CG--AGAT----taatttttttttttttcaaaaatgagcccagccggctttcgta
gi|21 : AA-------A-----AAT----TAA----CTC--G-----T-TTAA---CG-AG-------TT-----A--GTAT---TC-G-----A-TAT-A--TA--A--CT--AGTT----ACTT------A--A--------TCTCGGGT--TATT--AAC------GA-G------TTA----TT-AT----CC--GTT-AT-AAC--GAG--------ttttaatttttccaaaaatgagcccagctggctttcgtaaaa
gi|17 : A-------T-----AAA----TAA----CTC--T-----TTAGAA---TG-AG---ATA-CT-----A--AC-T---C--------G-T-T-T--TG--A--TG--AGAT-----CTA------AA-C--------TC----AT--TA-T--AAC------GA-G-----ATAA----TTAAT----TC------AT-TAC--GAG--------AT---------------AT-TA---ACTG---GTT-A--A----A-A---C--GAGAA-AACT-AAATCG--------CT-AG--AA---CGtgtaaattttttcaaaaaaatgagctcagcaggctttcgtagttacatgtatgt
gi|18 : acgagA-------T-----AGC----AAA----CTC--GA----T-ATAA---CGAAG---GT--TT-----A--AC-T---TT-A-----A-C-TAT--TA--A--CT--TAAT----A-TT------AG-A----------------------------------A-A-----ATAT----CTAAC----TC--G---TT-AAC--CAG--------AT-----A--A-----C---TA---A------ATC-GCTA----TAA---C--GATAT-GATT-AGCCCA--------TT-AT--AA---CGA-------------TAT-----AAT-T-----------A-A-T-T-CC--T---TAT---A-AC-G-----A---G-ATA------------A---T-T---AA--------TTCA--T---TA-T-A--A--C--Gtttaatcgaagtacttaatgtactgataaccggtactgtttaga
gi|12 : ag----TAT----CTCG-T-----T-ATAA---CG-AA---TTAATT--------AT-C---TC-------G-T-T-A--TA--A--CA----------ACTT------AA-GTATC----TC----GA--TA-T--AAC------GA-G-----
gi|32 : gctcgaagattttgtcaaacaattgttgtacatgactagttaacgataatattttgacaatggaagatcagtactcttgttgaatattagaaataaatcgtcaccttttcatttcttaggagctggaaataacttgtacgacgaataaaattcttacgtaatcttcatcataaaaaaatcgtattttggggatttaaagaatttcaaattgtttgtttaaatttttaaaaaaacgaccccttaacgctttcatagatactaa----TAA----CTCG-T-----T-ATAA---CG-AG---ATAATT-----A-----T---CC-C-----G-T-T-A--TA--A--CG--AGtataac
gi|40 : ----TAA----CTCG-T-----T-ATAA---CA-AG---GTAAGC-----A--AT-T---C--------G-T-T-A--TA--A--CG--AGAT----ATTtttttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|32 : aacgttttcatacacctAA----CTCG-T-----T-ATAA---CG-GG---ATAATT--------AT-C---TC-------G-T-T-A--TA--A--CG--AGTT----A
gi|34 : ----CTCG-T-----T-ATAA---CG-AG---ATAACT-----A--GC-T---T--------G-T-T-A--TA--A--CG--AGTT----AATT------tttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|29 : at----CTCG-T-----T-GTAA---AG-AG---TTAATT-----A---------TCGA-----G-A-T-A--TA--A--CG--ATTT----AATT------GT-C--------TC----GT--TA-T--AAC------AA-GTGC--ATTA----TT-------TC--GTT-AT-AAC--GAtttttttaatttttccaaaaatgagcccagctggctttcgtaaaa
gi|9 : --T-----T-ATAA---CG-AGT--TC--TT-----T--AT-C---TC-------G-T-T-C--TA--A--CG--AGAT----ACTTCTAACGAA-ATAACTAACTC----GT--TA-T--AAC------GA-G-----GTAG----ATAAC----TT--GTT-AT-AAT--GAA--------AT-----TCTA--------GTA---ATTTTAAATTCGTTG----T-A---A--CAAAT-TATTCAATTCG--------TT-AT--AA---T--------T----A-TAT-----AAT-T-----------A-A-C-T-C-------TAT---A-AC-G-----A---G-ATA------------A---T-T---AA--------CTTG--T---TA-T-A--A--C--GAG-------------ATGTT-A--ACTC------T-----------C--GTTAT--A-C-CT---AG---TTA--GATA-TTT----T----TTTT--TTTT-ATACTTAGGCCTCT------TTCAAA---AA-----CGAGCCCA-GCCAACTTTCGCAagaactaacccgttataacgaaata
gi|29 : ttgcaaagaaaacattacgtacatgtcatcatacgatagctacaacttgttctagataagaattacatgtaatcttacatttcgggaataattaagagaaggctcatgaacgttttcatagtactgcg--T-----T-ATAA---CG-AA---ATAATG-----C--AC-T---T--------G-T-T-A--TA--A--CG--AGAC----AATT------AA-A--------TC----GT--TA-T--ATC------TC-G-----ATAA----TTAAC----TCTTT---AC-AAC--GAG--------A
gi|18 : tcg--T-----T-ATAA---TG-AA---TTAATT-----A---T-C---TC-------G-T-T-A--TA--A--GG--AATT----AATT------AT-A--------TC----GT--TA-T--AAT------GG-G-----gaactaacccgttataacgaaata
gi|21 : agatagcaaactcgatataacgaaggtttaactttaactattaacttaatattagaaaatatctaactcgttaaccagataactaaatcgctataacgatatgattag-----T-ATAA---CT-AG---TTACTT-----A--AT-C---TC-G-----GGT-TAT--TA--A--CG--AGTT----ATT----------A--------TCC---GT--TA-T--AAC------GA-G-----cg
gi|33 : -----T-ATAA---TG-AA---GTAATA-----T--AT-T---TC-------G-T-T-T--TA--C--TG--AATT----AATT------AC----------TC----GCAATA-T--AAC------GA-G-----ATtatcgaatactaactcgttaaacgagttaattttttgtaaattttttcaaaaaaatgagctcagcaggctttcgtagttacatgtatgt
gi|34 : ctAATT-----A--AC-T---C--------G-T-T-A--TA--A--CA--AGCT----AGTT------AT-C--------TC----GT--TA-T--AAC------GA-G-----ATccaatataattctttccttataatgaggtaa
gi|12 : --AT-C---TC-------G-T-T-A--TA--A--CG--AATT----AATT------AT-C--------TC----GT--TA-T--AAC------AA----------C----TTAAGTATCTC--GAT-AT-AAC--GAG--------tttttttaatttttccaaaaatgagcccagctggctttcgtaaaa
gi|34 : gctcgaagattttgtcaaacaattgttgtacatgactagttaacgataatattttgacaatggaagatcagtactcttgttgaatattagaaataaatcgtcaccttttcatttcttaggagctggaaataacttgtacgacgaataaaattcttacgtaatcttcatcataaaaaaatcgtattttggggatttaaagaatttcaaattgtttgtttaaatttttaaaaaaacgaccccttaacgctttcatagatactaa--AT-C---TC-------G-T-T-A--TA--A--CG--AGAT----AACT------AG-C--------TT----GT--TA-T--AAC------GA-GTTA--ATTT----TTatataac
gi|40 : --AT-C---TC-------G-T-T-A--TA--A--CG--AATT----GCTT------AC-C--------TT----GT--TA-T--AAC------GA-G-------------TTAAG----ttttaatttttccaaaaatgagcccagctggctttcgtaaaa
gi|35 : aacgttttcatacac---TC-A-------T-T-A--TA--A--GG--AGAT----A-TG------AT-G--------TC----GT--TA-T--AAC------GA-G-----ATGT----Tatt
gi|28 : agatagtatctcgttaaatcgagattataattactagctcgC-A-----G-T-T-CGTTA--AAATG--AGAT----ACT-------AA-C--------TC----GT--TT-T--AAC------GA-G-----A-CT----CTATG----TC--GCA-AT-AAC--GAA--------AT-----A-------------------TT---GTT-ATTA----T-G---C--GACAT-agtga
gi|32 : aatgagttag-----G-T-T-A--TA--A--CG--AGAT----AATT------AT-C--------CC----GT--TA-T--AAC------GA-G-----TTTT----TTtttttgactgaaatgtgaga
gi|32 : taactc-----G-T-T-A--TA--A--CG--GGAT----AATT------AT-C--------TC----GT--TA-T--AAC------GA-G-----tttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|29 : taa-----G-T-T-A--TA--A--CG--AAAT----AATG------CA-C--------TT----GT--TA-T--AAC------GA-G-----ACAA----TTAAA----TC--GTT-AT-ATC--TCG--------AT-----A---------AT-TA---ACTC---TTT-A-CA------A---C--GAGAG-AACT-AACCCG--------TT-AT--AA---CGAA---A-T----Agagtttttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|37 : tc-----G-T-T-G--CA--A--CG--AGAT----AC-T------AA-C--------TC----GT--TA-T--AAT------GA-GTTA--ATTC----TT
gi|43 : actt-----G-T-T-G--TA--A--CG--AGAT----AACT------AA-C--------TC----GT--TA-T--AAtcttccaaaaatgagcccagccggctttcgtac
gi|17 : --A--CG--AGAT----AAAT------AA-C--------TC----TT--TA-G--AAT------GA-G-----A-TA----CTAAC----TC--GTT-TT-GAT--GAG--------AT------CTA----------A---ACTC---ATT-A-TA------A---C--GAGAT-AATT-AATTCA--------TT------A---CGAG---A-T----AT------------T-----------A-A-C-T-GG--T---TAA---A-AC-G-----A---GAAA-------------A---C-T---AA--------ATCG--C---TA-G-A--A--C--Ggattttttttttgtttttt
gi|12 : --AGAT----ACT-------AA-C--------TC----GT--TA-T--ATC------GA-G-----ATAC----TTAAG----TT--GTT-AT-AAC--GAG--------AT-----A---------AT-TA---ATTC---GTT-A-TA------A---C--GAGAT-ATAT-AACtttaatcgaagtacttaatgtactgataaccggtactgtttaga
gi|7 : gctcgaagattttgtcaaacaattgttgtacatgactagttaacgataatattttgacaatggaagatcagtactcttgttgaatattagaaataaatcgtcaccttttcatttcttaggagctggaaataacttgtacgacgaataaaattcttacgtaatcttcatcataaaaaaatcgtattttggggatttaaagaatttcaaattgtttgtttaaatttttaaaaaaacgaccccttaacgctttcat--AGAT----ACT-------AA-C--------TC----GT--TA-T--AAC------GA-G-----ATAA----TTAAC----TC--GTT-AT-ACC--GAG--------AT-----AC-----------TA---ACCC---GTT-A-TA------A---C--GAGTT-AATT-
gi|5 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatAC----ACTT------AA-C--------TC----GT--TA-T--A---------A-G-----ATAA----TTAAT----TC--G-----------------------T-----TCAG-----CATATA---A--------------------A---C--GAGAT-AA-T-AACT-GTT------AT-A---AA----GAG---A-T----AC------------T-----------A-A-C-----------TGT---A-AT-A-----A---G-AT-------------A---C-G---AA--------CACG------TA-T-A--A--C--G-G-------------A-----A--AT-TAA-C--T-----------C--G-TAT--A-A--A---CA---GTA--ATTT-TTT----T----Tttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|21 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacgaacttgaaatcttaattgtaagggggaagggtacgagtttttattgtccttctcattttagtgcagttgattgctcaagatcgataagttgaagagctgtacatactttgaaaatgtacaatatagtattttgaatgaatgatgtcgttcattttttggagcggatactatatttctagtcacacttttttcaatttttttggtgcggaaaataataatttttaggccatttttacgacgaaagaaaaatcttaccgcttaaaatgatatcataaaaaattcagtaatttggggactcaagaatttttaaattcctgttaaaattttgaaagaaaaccataactttcat--------TC----GT--TA-T--AAC------G--G-----ATAA----T-AAC----TC--GTTAAT-AACCCGAG--------AT-------TA------A-GTA---ACTA---GTT-AT-A----T-AT--C--GA-AT-A-CT-AACTCG--------TT-A---AA---CGAG---T-T----Attcaaaaatg
gi|18 : c--------TC----GA--TA-T--AAC------GAAG-----GTTTAACTTTAA------C--T---ATTAAC--TTA--------AT-----ATTAGAAAATATCTA---ACTC---GTT-A---------A---C--CAGAT-AACT-AAATCG--------CT-AT--AA---CGA------T----A-TG-------AT-T-----------A-G-C-C-CA--T---TAT---A-AC-G-----A---T-AT-------------AA--T-T---AA--------TTCC--T---TA-T-A--A--C--GAG-------------A---T-A--AT-TAA-T--T-----------C--ATTAT--A-A-CG---attttttgtaaattttttcaaaaaaatgagctcagcaggctttcgtagttacatgtatgt
gi|35 : agatagcaaac--------TC----AT--TA-T--AAG------GA-G-----ATAT----G-ATG----TC--GTT-AT-AAC--GAG--------AT-----GTTA-----
gi|12 : agatagtatctcgttaaatcgagattataattactagctcgTAAC----TC--GTT-AT-ATC--GAG--------AT-----ACT----------TA---A------GTT-GTTA----T-AA--C--GAGAT-AATT-AATTCG--------TT-AT--AA---CGAG---A-T----Agtga
gi|29 : gctcgaagattttgtcaaacaattgttgtacatgactagttaacgataatattttgacaatggaagatcagtactcttgttgaatattagaaataaatcgtcaccttttcatttcttaggagctggaaataacttgtacgacgaataaaattcttacgtaatcttcatcataaaaaaatcgtattttggggatttaaagaatttcaaattgtttgtttaaatttttaaaaaaacgaccccttaacgctttcatagatac---AT-AAC--GAA--------AT-----AATG-----CAC--------------TT-GTTA----TAA---C--GAGAC-AATT-AAATCG--------TT-A---TATCTCGA---------------T-----AAT-T-----------A-A-C-T-CT--T---TAC---A-AC-G-----A---G-AGA------------A---C-T---AA--------CCCG--T---TA-T-A--A--C--GAA-------------A---T-A--tataac
gi|17 : tcgtt-AAT--GAG--------AT-----ACTA--------------ACTC---GTT-TTGA----T--------GAGAT-C-TA-AACTCA--------TT-AT--AA---CGAG---A-T----AAT-----------T-----------A-A-T-T-CA--T---TAC--------G-----A---G-AT-------------A---T-T---AA--------CTGG--T---TA-A-A--A--C--GAG-------------A---A-A--AC-TAA-A--T-----------C--GCTAG--A-A-CG---T----TTA--A
gi|5 : acgagataaataactctttagTA-----CACTTA---ACTC---GTT----A----T-A-------AGAT-AATT-AATTCGTTCAGCATAT-A---AA---CGAG---A-T----A-----------A-T-----------A-A-C-T--G--T---TAT---A-AA-G-----A---G-AT-------------A---C-T---AA--------C---------TG-T-A--A--T--AAG-------------A---T-A-----CGA-A--C-----------A--CGTAT--A-A-CG----GAAATTA--ACTC-GTA----TAAACAGTAA-TT-------TT----TTTT------TTC------AA-----tcgaagtacttaatgtactgataaccggtactgtttaga
gi|21 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacgaacttgaaatcttaattgtaagggggaagggtacgagtttttattgtccttctcattttagtgcagttgattgctcaagatcgataagttgaagagctgtacatactttgaaaatgtacaatatagtattttgaatgaatgatgtcgttcattttttggagcggatactatatttctagtcacacttttttcaatttttttggtgcggaaaataataatttttaggccatttttacgacgaaagaaaaatcttaccgcttaaaatgatatcataaaaaattcagtaatttggggactcaagaatttttaaattcctgttaaaattttgaaagaaaaccataactttcaTA---ACTC---GTT---TA------A---C--GAGTT-AGT---ATTCG--------AT-ATATAA---CTAG---T-T----ACT-----------T-----------A-ATC-T-CGGGT---TATT--A-AC-G-----A---G-TT-------------A---T-T---AT--------C-CG--T---TA-T-A--A--C--GAG-------------aaatg
gi|7 : TC-GTTA----T-AA--C--GAGAT-AATT-AACTCG--------TT-AT--AC---CGAG---A-T----AC------------T-----------A-A-C-C-CG--T---TAT---A-AC-G-----A---G-TT-------------A---attttttgtaaattttttcaaaaaaatgagctcagcaggctttcgtagttacatgtatgt
gi|7 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatagatactaacTC-GTTA----T-AA--C--GGGTT-AGT--ATCTCG--------GT-AT--AA---CGAG---T-T----AAT-----------T-----------A-T-C-T-CG--T---TAT---A-AC-G-----A---G-TT-------------A---G-T---AT--------CTattttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|34 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatTC-GTTA----T-AA--C--GAGAT-AACT-AGCTTG--------TT-AT--AA---CGAG---T-T----Agttaattttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|32 : atcTC-GTTA----T-AA--C--GGGAT-AATT-ATCTCG--------TT-AT--AA---CGAG---T-T----Aatttttttttaatttttccaaaaatgagcccagctggctttcgtaaaa
gi|32 : TC-GTTA----T-AA--C--GAGAT-AATT-ATCCCG--------TT-AT--AA---CGAG---gtttttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|29 : taacTC-GTTG----T-A---AA-GAGTT-AATT-ATCGAG--------AT-AT--AA---CGA-------------TTT-----AAT-T-----------G-T-C-T-CG--T---TAT---A-AC-A-----A---GTGC-------------A---T-T---AT--------TTCG--T---TA-T-A--A--C--GAtttttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|33 : TC-GTTA----T-ATTGC--GAG-T-AATT-AATTCA--------GTAA---AA---CGAA---A-T----AT---------AT-T-----------A-C-T-T-CA--T---TAT---A-CC-A-----A---T-AT-------------AATTC-T-------------TTCC--T---TA-T-A--A--T--GAG-------------G---T-A--Agagaactaacccgttataacgaaata
gi|8 : ctatc-GTTA----T-AA--C--GAGAT-AATT-TAC-----------------------CGAG---A-T----ACTG------------------------A-C-T-CG--T---TTT---A-AA-G-----A---G-AT-------------A---T-TAAAAA--------TTCC--T---TA-T-A--A--C--GAT-------------A---T-
gi|17 : aaacttcaaaatcttaaatcgtaagggtgagtaggtgacgagtgttcgtccttctctccacgggtccaatatatcagttcaactgattgcccaaatatcgatgtaacttgaaatcgaagatattgtccaacaggtgttgtatatatgtaaattgactagatatcaaaccataatttgacaatgtatttttgttgaataaaagaaaatatcgctaccttttcatttgttaggagctagaaaataacattttcttgttatatttatgacgactagaattcttacgtaatcgtcatcatcaaaaaattatgtaactaggggatttaaataatttctaagagttttgtgaaatttgaaaagaacaaccccttaatgttttcatagatacaagctaacta-A---C--GAGAT-AAAT-AACTCT--------TT-AG--AA---TGAG---A-T----ACT-----------------------A-A-C-T-CG--T---TTT---G-AT-G-----A---G-AT-----------------C-T---AAA-------CTCA--T---TA-T-A--A--C--GAG-------------A---T-A--AT-TAA-T--T-----------C--ATTAC--G-A-GA---TA---TTA--ACT
gi|12 : AGAT-A-CT-AACTCG--------TT-A---TAT--CGAG---A-T----ACT-----------T-----------A-A-G-T-TG--T---TAT---A-AC-G-----A---G-AT-------------AA--T-T---AA--------TTCG--T---TA-T-A--A--C--GAG-------------A---T-A--ggttaaaacgagaaaactaaatcgctagaacgtttaatcgaagtacttaatgtactgataaccggtactgtttaga
gi|35 : gctcgaagattttgtcaaacaattgttgtacatgactagttaacgataatattttgacaatggaagatcagtactcttgttgaatattagaaataaatcgtcaccttttcatttcttaggagctggaaataacttgtacgacgaataaaattcttacgtaatcttcatcataaaaaaatcgtattttggggatttaaagaatttcaaattgtttgtttaaatttttaaaaaaacgaccccttaacgctttcatAGAT-AGT--ATCTCG--------TT-A---AAT--CGAG---A-TTATAATTAC---------T-----------A-G-C-T-CG--TCATTAT---A-AG-G-----A---G-AT-------------A---T-G---AT--------GTCG--T---TA-T-A--A--C--GAG-------------A---T-tataac
gi|7 : -AATT-AACTCG--------TT-AT--AA---CGGG---T-T---------------AG-T-----------A-T-C-T-CG--G---TAT---A-AC-G-----A---G-TTA------------A---T-T---AT--------CTCG--T---TA-T-A--A--C--GAG-------------T---T-A--gttagtga
gi|34 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatagatac-AATT-AACTCG--------TT-AT--AA---CAAG---C-T----AGT-----------T-----------A-T-C-T-CG--T---TAT---A-AC-G-----A---G-AT-------------ttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|40 : TT-AACTCG--------TT-AT--AA---CAAG---G-T----A----------AG-C-----------A-A-T-T-CG--T---TAT---A-AC-G-----A---G-AT-------------A---T-T---tttttttaatttttccaaaaatgagcccagctggctttcgtaaaa
gi|32 : aacgttttcatacaccT-AACTCG--------TT-AT--AA---CGAG---A-T----AAT-----------T-----------A-T-C-C-CG--T---TAT---A-AC-G-----A---G-
gi|16 : -AACTCGTT------AT-A---AA----GAG---A-T----ACT--------AG-TTAACGCTTTCAA-A-C-T-CG--T---CATTTCACAT-T-----T---A-AT-------------A---C-T---AA--------CTCG--T---TT-C-A--A--C--GAG-------------A---C-----T-CAA-GC-T-----------C--ATTAT--A-A-CG---GG---TTA--ATAT-TAT----T----TG-----TTC-TTACTT----TTTC------AAA------AA-----TGAGTCCAC-CCGGCTTTCGTAtttttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|37 : gcgagataactataccttgttcgaaagagag---AA---CGAG---A-T----ACT-----------------------A-A-C-T-CG--T---TAT---A-AT-G-----A---G--------------------T-T---AA--------TTCT--T---Tgaaa
gi|8 : acttgttgcTAC-----AAGCT-----------A-A-C-T-AG--T---TAT---A-AC-G-----A---G-ATAATTTACCGAGATA---C-T---GA--------CTCG--T---TT-T-A--A--A--GAG-------------A---T-A--TT-AAA-AATT-----------C--CTTAT--A-A-CG---cttccaaaaatgagcccagccggctttcgtac
gi|7 : aaacttcaaaatcttaaatcgtaagggtgagtaggtgacgagtgttcgtccttctctccacgggtccaatatatcagttcaactgattgcccaaatatcgatgtaacttgaaatcgaagatattgtccaacaggtgttgtatatatgtaaattgactagatatcaaaccataatttgacaatgtatttttgttgaataaaagaaaatatcgctaccttttcatttgttaggagctagaaaataacattttcttgttatatttatgacgactagaattcttacgtaatcgtcatcatcaaaaaattatgtaactaggggatttaaataatttctaagagttttgtgaaatttgaaaagaacaaccccttaatgttttcataga-----AAT-T-----------A-A-C-T-CG--T---TAT---A-AC-G-----G---G-TT-------------A---G-T---AT--------CTCG--G---TA-T-A--A--C--GAG-------------T---T-A--AT-TAT-C--T-----------C--GTTAT--A-A-CG---AG---TTA--atat
gi|2 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatagatac-----AAA-T-----------T-A-C-T-CG--T---TAT---A-AC-G-----A---G-ATTG-----------A---T-T---AT--------CTCGCCT---TGAT-A--A--C--GAA-------------A---T-ttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|34 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggaccttaaattgtaagggggggggggcgggatggtgcagtggtaacgatctgtgtccttctcattttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggactggaacaatattcagtacttttgttgaataaagaaatagatcatcgcctttcatttacttgtgaggagcgtggaaaataaccatttgtgagccattagtacgacgaagaaacttcaatcgttatcgatcaaaaaatcatgaatttagcgacttctctatttcaaattgtttcttttaaaatatgttcaattagaaaaagacctttaacgtttctaccacactacacatcgttataaccgtaaacaagataattaatgtatgtaacgcaggataattaacatcgtgtataacagataattaactcgtattgcgggaaattatcatgttcatatagagacatgatgatagaggtgctggaaacgaattaattctataaacgacacaaatatacgtgcgttataacgagtatagatagtaatacgag-----AAT-T-----------A-A-C-T-CG--T---TAT---A-AC-A-----A---G-CT-------------AG--T-T---AT--------CTCG--T---TA-T-A--A--C--GAG-------------A---T-ttatta
gi|37 : -----AAT-T-----------A-A-C-T-CA--T---TAT---A-AC-G-----A---G-TT-------------A---G-T---AT--------CTCG--T---TG-C-A--A--C--AAG-------------tttttttaatttttccaaaaatgagcccagctggctttcgtaaaa
gi|28 : aAG-C-----------A-G-T-T-CG--T---TAA---A-AT-G-----A---G-AT-------------A---C-T---AA--------CTCG--T---TT-T-A--A--C--GAGACTCTATGTCGCAA---T-A--AC-GAA-A--T-----------ATTGTTAT--T-A-TG---CG--------ACAT-TTT----T----TGctttcttccaaaaatgagcccagccggctttcgtac
gi|40 : aatgagttAA-T-----------A-T-C-T-CG--T---TAT---A-AC-G-----A---A-TT-------------G---CTT---AC--------CTTG--T---TA-T-A--A--C--GAG-------------T---T-A--Aactgaaatgtgaga
gi|35 : aacgttttcatacaccAG-T-----------A-T-C-T-CG--T---TA----A-ATCG-----A---G-ATTATAATT------A---C-T---AG--------CTCG--TCATTA-T-A--A--G--GAG-------------A---T-A---T-GAT-G--T-----------C--GTTAT--A-A-CGAGATG---TTA--
gi|12 : agat-T-----------A-A-C-T-CG--T---TAT---A-TC-G-----A---G-AT-------------A---C-TT--AA--------GTTG--T---TA-T-A--A--C--GAG-------------A---T-A--AT-TAA-T--T-----------C--GTTAT--A-A-CG---gtga
gi|12 : gctcgaagattttgtcaaacaattgttgtacatgactagttaacgataatattttgacaatggaagatcagtactcttgttgaatattagaaataaatcgtcaccttttcatttcttaggagctggaaataacttgtacgacgaataaaattcttacgtaatcttcatcataaaaaaatcgtattttggggatttaaagaatttcaaattgtttgtttaaatttttaaaaaaacgaccccttaacgctttcatagatac-T-----------A-T-C-T-CG--T---TAT---A-AC-G-----A-----ATTA-----------A---T-T---AT--------CTCG--T---TA-T-A--A--C--AAC-------------T---T-A--AG-TAT-C--T-----------C--GATAT--A-A-CG---AG---TTA--agatatataac
gi|14 : gctcgaagattttgtcaaacaattgttgtacatgactagttaacgataatattttgacaatggaagatcagtactcttgttgaatattagaaataaatcgtcaccttttcatttcttaggagctggaaataacttgtacgacgaataaaattcttacgtaatcttcatcataaaaaaatcgtattttggggatttaaagaatttcaaattgtttgtttaaatttttaaaaaaacgaccccttaacgctttcatagatac-T-----------A-A-C-T-CG--T---TAT---A-AC-G-----A---G-AT-------------A---tataac
gi|7 : tcagtactttttttttaataaaagaaatagatcgtcgccttttcatttctttggagctggaaaataatattttctagccatttttacgacgaataaatttcttacctaatcgttatcattaaaaaaaatcatgtaatttggggacttcaagtttcaaattgttctgtttaaattttcaatagaaaaacccttaaacgttttcacacacac-T-----------A-A-C-T-CG--T---TAT---A-AC-G-----A---G-ATA------------A---T-T---AA--------CTCG--T---TA-T-A--C--C--GAG-------------A---T----AC-TAA-C--C-----------C--GTTAT--A-A-CG---AG---TTA--A--T-TTT----T----TA--A-TTTT-T---TT----TTTT------TTCAAA---AA-----TGAGCCCA-GCCGGCTTTCGTAattaa
gi|19 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatagatac-T-----------A-A-C-C-CG--T---T-T---A-TC-C-----A---G-AT-------------AA--T-T---AA--------ATTG--T---TA-T-ATAA--C--GAG-------------A---T----AC-TAA-C--T-----------C--GTTATAAA-A-CG---AG---TTATTATTT-TTT----T----T-----TTTTATTATCA----TTTT------TTT------AA-----TGAGCCCA-GCCGGCTTTCGTA
gi|16 : tgtttaaattttggaaagaacgcccctaacgttttaaaagatac-T-----------A-A-C-C-CG--T---TAT---A-AT-G-----A---G-CT-------------------T---GAGT------CTCG--T---TG-A-A--A--C--GAG-------------T---T-AGTAT-TAA-A--TGTGAAATGACGA--GTTTG--A-A-AG---CG---TTA--ACTa
gi|32 : gcgagataactataccttgttcgaaagagagaactcgttataaagagatact-T-----------A-A-C-T-CG--T---TAT---A-AC-G-----A---G-AT-------------A---atattatttgttcttactttttcaaaaatgagtccacccggctttcgtagaaa
gi|40 : -T-----------A-A-C-T-CG--T---TAT---A-AC-A-----A---G-GT-------------AAG-C-----AA--------TTCG--T---TA-T-A--A--C--GAG-------------A---T-A--attatcccgttataacgagtttttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|24 : aacgttttcatacacct-T-----------A-A-C-T-AC--C---TGT---A-AT-A-----ACATG-AT-------------A---A-T---AA--------CTCG--T---TA-T-A--T--G--GCG-------------A---T-G--A---------------------------AT--A-A-C----TG---TTT--ATTTATTTA---T----TTTTA-TTTT-TTTTTT----TTTA------TTCTTCAA-AA-----TGAGCCCAT-CTAGCTTCCtt
gi|23 : ttca-T-----------A-A-C-T-AC--C---TGT---A-AT-A-----ACATG-AT-------------A---A-T---AA--------CTCG--T---TA-T-A--T--G--GCG-------------A---T-G--AA-TAA-C--T-----------G--TTTAT----------------TTA----TT-TAT----T----TTTTA-TTTT-TTTTTT----TTTTGTATTCTTC------AAAA---TGAGCCCAT-CTAGCTTCCta
gi|32 : ttca-----------A-A-C-T-CG--T---TAT---A-AC-G-----G---G-ATA------------A---T-T---AT--------CTCG--T---TA-T-A--A--C--GAG-------------T---T-A--ta
gi|43 : -----------A-A-A-T-CG--T---TGT---A-AC-G-----A---G-AT-------------AA--C-T---AA--------CTCG--T---TA-T-A--A--tttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|37 : -A-C-T-TG--T---TGC---A-AC-G-----A---G-AT-------------A---C-T---AA--------CTCG--T---TA-T-A--A--T--GAG-------------T---T-A--Atttttttgtttttt
gi|21 : -C-T-CG--T---TAT---A-AC-G---------G-AT-------------A---A-T---AA--------CTCG--T---TAAT-A--A--CCCGAG-------------A---TTA--AG-TAA-C--T-----------A--GTTAT--ATATCGAA-TA---CTA--ACTC-GTTAAACG----AGTTAATTTT-TTG--TAAA-TTTT------TTC------AAAAAAATGAGCTCA-GCAGGCTTTCGTAttctttcttccaaaaatgagcccagccggctttcgtac
gi|28 : -C-T-CG--T---TAA---A-AC-G-----A---G-TT-------------A---G-T---AT--------CTCA--T---TT-T-A--A--C--GAgttacatgtatgt
gi|29 : aatgagttagcagt-T-CG--T---TAT---A-AC-G-----G---G-TT-------------AGTTC-T-------------CTCG--T---TG-T-A--A--A--GAG-------------T---T-A--AT-TAT-C--G-----------A--GATAT--A-A-CG---AT---TTA--A-TT-GTC----T----CGTTA-Tactctatgtcgcaataacgaaatattgttattatgcgacattttttgactgaaatgtgaga
gi|18 : tcgttataacgaaataatgcacttgtt-CG--T---TAT---A-AT-G-----A-----ATTA-----------A---T-T---AT--------CTCG--T---TA-T-A--A--G--GAA-------------T---T-A--AT-TAT-A--T-----------C--GTTAT--A-A-TG---GG---CTA--A-TC-ATA----T----CGTTA-Taata
gi|12 : agatagcaaactcgatataacgaaggtttaactttaactattaacttaatattagaaaatatctaactcgttaaccagataactaaatcgct-----A---G-AT-------------A---C-T---AA--------CTCG--T---TA-T-A--T--C--GAG-------------A---T-A--CT-TAA-G--T-----------T--GTTAT--A-A-CG---AG---ATA--A-TT-AAT----T----CGTTA-T
gi|14 : gctcgaagattttgtcaaacaattgttgtacatgactagttaacgataatattttgacaatggaagatcagtactcttgttgaatattagaaataaatcgtcaccttttcatttcttaggagctggaaataacttgtacgacgaataaaattcttacgtaatcttcatcataaaaaaatcgtattttggggatttaaagaatttcaaattgtttgtttaaatttttaaaaaaacgaccccttaacgctttcat-AC-------------A---C-T---AA--------CTCG--T---TA-T-A--A--C--GAG-------------A---T-A--AT-TAA-aacgagatatataac
gi|7 : tcagtactttttttttaataaaagaaatagatcgtcgccttttcatttctttggagctggaaaataatattttctagccatttttacgacgaataaatttcttacctaatcgttatcattaaaaaaaatcatgtaatttggggacttcaagtttcaaattgttctgtttaaattttcaatagaaaaacccttaaacgttttcacac-------------A---T-T---AA--------CTCG--T---TA-T-A--A--C--GGG-------------T---T-AGTAT-C------T-----------C--GGTAT--A-A-CG---AG---TTA--A-TT-ATC----T----CGTTA-T
gi|34 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatagatactaactcgtt-------------A---T-T---AA--------CTCG--T---TA-T-A--A--C--AAG-------------C---T-A--GT-TAT-C--T-----------C--GTTAT--A-A-CG---tttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|32 : atct-T---AA--------CTCG--T---TA-T-A--A--C--GAG-------------A---T-A--AT-TAT-C--C-----------C--GTTAT--A-A-CG---AG---TT-----TT-TTT----T----T-TTG-TTTT-T---TT----TTCC------TCCAAA---AA-----TGAGCCAA-GCCGGCTTTCGTAttttttttaatttttccaaaaatgagcccagctggctttcgtaaaa
gi|40 : -T---AA--------CTCG--T---TA-T-A--A--C--AAG-------------G---T-A--AG-CAA-T--T-----------C--GTTAT--A-A-CG---
gi|32 : aacgttttcatacacct---AA--------CTCG--T---TA-T-A--A--C--GGG-------------A---T-A--AT-TAT-C--T-----------C--GTTAT--A-A-CG---AG---TTA--agatatt
gi|43 : ---AA--------ATCG--T---TG-T-A--A--C--GAG-------------A---T-A--AC-TAA-C--T-----------C--GTTAT--A-A-tttttttttgtttttttttcctccaaaaatgagccaagccggctttcgta
gi|37 : A--------CTTG--T---TG-C-A--A--C--GAG-------------A---T-A---C-TAA-C--T-----------C--GTTAT--A-A-TG---AG---TTA--ATT-----------------------------CT----TTCT------TCCAAA---AA-----TGAGCCCA-GCCGGCTTTCGTAtttttttgtttttt
gi|34 : --------CTCG--T---TA-T-A--A--C--GAG-------------A---T-A--AC-TAG-C--T-----------T--GTTAT--A-A-CG---AG---TTA--ATTT-TTT----T----T--TA-ATTT-TT-------------------CC------AAAAA--TGAGCCCA-GCTGGCTTTCGTAc
gi|39 : at--GTTAT--A-A-CG---TG---TTA--ACTT-TTT----T----TGTTA-TTTT-TTGCTT----TTTT------TTC------AA-----TGAGCCCATGCGGGCTTTCGTaaa
gi|42 : A-TTTT-TTTTTT----ATTT------TTCTCCAAAAA-----TGAGCCCA-GCCGGCTTTCGTA
gi|46 : TT----TTTC------TTCCAAA--AA-----TGAGCCCA-GTCGGCTTTCGTAcaca
gi|51 : tttTT----TTTT------TTCGAA---AA-----TGAGCTCA-GCCGGCTTTCga
gi|48 : TT----TTTT------TTCAAA---AA-----TGAGCTCA-GCCGGCTTTC
20 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TCATTACAAAGACGTATCTTACGGAACCGTTATAGGACCATCTCTTGTTCCTGAAATCTTTAAATCAAGTGTAGCAGTTTAGAATTACATGTACTTTAGAAATAAAAGAAAAATGATAAGTAACGTTACAATATACTGAAAATGTATTAATATAGATTTTTCCAAGTTTATAAACTCGATTTTTGTAGAAATACATGTAAAATAAATCACCACAGTACATTACTTTACAGATGTTTGTAAGTTTATATTTAACTCATCTACATATATAATTATTTGAATCAAATCTGCTCTTGTCGTAATCAGCCCGCATTTACATTTATAAATAGATACATATTTTTTGTAATTGAAGGCATAAACTGAAAATGAAGTACATGCAGTAATAATTTTCTTTTCCAGACAAATATCTGTTGAATGGTTGATCATATATTGGTGAATTGACATTGTACGGTCGCGTACATGTACTACTGTTTTTCAAAGTGAGGTGGGTGGGGGGTGCAGTCTTATGAAAAGTTGAGTTTACAATTGTCCATAATACTCGACAGGACAGGCAAAATATAAGAGAAATTTTTATCTAACTAAGGCTAAACTTCAACATCCTGGAAAGTGTGGGGGCAAAGAGCACAAAACACTCGAGATCTTTACTCGAACTTTGAAATCTTAAATGAAGGGGAGTGGGTAACGAGTTTTTGCCTTCTCATTTTGTTCAGTTGATTGCTCAAAGATCGAGTAAGCTTGAAGATGTTTGACATATGTTTTGACAATGGAACAATTTTCGTTTTAAATTTTCAATATAAAA
Unaligned ( gi|6 ): CCAATAATTACAATGCTATTACGGACGTTAAGGACCTCTTGATCTGAAATTGTTAAATCAGTGTAGCAGTTAAACTACATGTTAAGAATAAAAGAAACTATAATCAAGAAACGAAAATATATTTATCTAGTTTTTCCAAGTTACTAAATCCGTGATTATTTTTTGTAGAAATACAGTATAACCATGTGAATAAATCATCAGTACAACTTTGCAGTTTTTGAGTTATATATATAATCATTAATGTATATATTTGAAGACATTTTGTCGGTATTGTCAACGAAAGAAACAAAAGCGCTCTTCATATCGCCCGCATTTAATTATTCTTATAAAAGAGTTTTTTGTAATTGAAGGTTAAACTGAAAAGAAGTACATGGCAATAATAATTTCTTTGCCAACAATATGCTGTTAATGTATTACTTCATGAATGTTGATCATTTATGGGGTGAATGACAAGATCATTCGCGTAAGCGCTAGTTTCCAACAGTGAGGTGTGGGCGCAGTCTTATGAGATAAGTTTACAATTCTAGTATCGACAGGCAAAAACAAAG
Unaligned ( gi|10 ): AAATCAATACAAAGATGTATCTTACGGAACCGTTATAGGACGTTCTCTTGTTCCTGAAACCTTTAAATCAAGTGTAGCAATTGTAGAATTACATGTACTTACTGAAAATGTTTTAATCTATATTTTTACAAGTTTATAAACTTCATAATTATTTTGTGAAAATACATATAAACCTTGAAAAATAAATCATCACAGTACATTACTTTGCAGATGTTTGTGAGTTTATATACAACTCACCTACATGTATAATATTTGAATGTCTTTTGTCGTGGTATTGGCCAACAGAAAGAAATCAAATCTGCTCTTGTCTTGGTCAGCCCGCATTTACATTTATAACAGAGATACTTTTTTGTAAATAAAGGCATAAACTGAA
Unaligned ( gi|11 ): TATACTATTTGAAGACCTTTTGTCGTGGTATTGGTCAACAGAAAGAAATCAAAGCTGCTCTTTTCATAGTCAGCCCCGCATTTACATTATTTTATAACAGAGATTTTTTTGTAATTGAAGGCTTAAACTGAAAACGAAGTACATGCAATAATAATTTTCTTTGCCAGACAAATACCTGCTGTTACATGGTATATACCTTCATGAATGGTTGATCATTTATTGGGGTGAATTGACAAAGCATTCGCGTACATGCGCTACTGTTTTCCAAAGTGAGGTGGGTGGGGGCGCAGTCTTATGAGAAGTTGAGTTTACAATTGTCCTTAGTACTCGACAGGCAAAATACAAGAGAAATGT
Unaligned ( gi|15 ): TCAATTACATAACAGACGTAATCACAGGACACCGTTATAGCCATCTCTGTCCTGAAAAATCTTTAATACAAGGTGCAGTTTATAATACATGACTATTTACGAAAATAAAAGGAGAAATCATTAAGTAACGCTTACAAAAAACTGAAAATGTGTTTAAATTGAATATCTTGCAAGTTATAACTCGTGATTATTTTGTAAAT
Unaligned ( gi|20 ): TAAATCATTACAAATACGTATCTTACGGAACTGTTATAGGACCATCTCTTGTTCCTGAAATCTTTAAATCAAGTGTAGCAGTTTAGAATTACATGTACTTTAGAAATAAAAGAAAAATCATAAGTAACGTTACAATAAACTGAAAATGTTTTAATCTAGAT
Unaligned ( gi|25 ): AAGGCTAAACAACAGTGTGTGGAAAGGGGGGGGGGGGCACAAAAACCTAGAAATCTTTACTCGAACTCTGAAATCTTAAATTGTAAGGGGGGTAACGAGTTTTTGTCATTCTCATT
Unaligned ( gi|26 ): GGCACAAAACATAAATTATAAGACGTTTTCACTCAAATTTCGAGATCTTAAATCATGAGGGGGAGGGACTAACAAGACTTCATCCTTCTCTACACGGGTCCAATTCATTA
Unaligned ( gi|27 ): TTATAACGATATATTAATTCCTTAGACCGAAATAATAAGCTCGCTTTAACTCGTTATAACGAGCTGATTTTTCTCTCTTCAAATAAATAAGCCAAAGTCCGGCCTTCGTT
Unaligned ( gi|30 ): TACAATGTCATTTTTTTTTTATCAGACAGCTATTTTTCTACTACATGGTATATCTTCACGAATGATTGTCATTAATTGATGAATTGACGTCAAGG
Unaligned ( gi|31 ): ATGTAAAATAAATCACCGACAGTACACTTGATTACGATGTTTGTAAGTTTATATTTAACTCATTCTACAGACATAGTATAATATTTGAATACC
Unaligned ( gi|36 ): AAAATCTTAAATTGTAAGGTGGTGGGTGGGGGCTGGTACGTCCTACCCTGCATGGGTTCAAATCACCAGTTTAAAATTGC
Unaligned ( gi|38 ): AAACATCATACTCAAGTTTGAAATTATTCAATTTAAGGGGAGATGCATAACTGATGCTTCTGCCCTTTCATT
Unaligned ( gi|41 ): CAACTCATCTACATGTATAATACTTAAATATATGTTGTCGTGGTAAAAAAAAAAAAAACAA
Unaligned ( gi|44 ): ACTTCAACATCCTGGAAAGTGTGGGGGCAAATAGCACCAAAAAAACC
Unaligned ( gi|45 ): TTTTTTATTTTTCCAAAAATTAGCCCAGCCGGCTTTCGTACACA
Unaligned ( gi|47 ): CCAAAAATGAGCCCAGCCGGCTTTTAATTCGTAAGTATACT
Unaligned ( gi|49 ): TTTTTTTCAAAAATGAGCTCAGACGGCTTTCGT
Unaligned ( gi|50 ): TTCCAAAAATGAGCCCAGCCGGCTTTCCTAAGA
Unaligned ( gi|52 ): AATATTTTTAACATAGACACATTTCTATATTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 2222222222222 77777777777777777777777777777 11111111 111 333333333333333333333333333333333333333333 1111111 1111 2222222 1111 22222222222222222222222222 111111 11111111111 1 111 1111111 1111111 22222 33333333333333333333333333333333333 222222222 111 11111 77777777777777777777777777777777777777777777777777777777777777777777777777777 333333333333333333 111 11111 11111 1111111111111 11111 11111111
lowQualScore : 55 3 3 3 3 0000000000000 7777 3 1 555 555 55555555555555555555555555555 777 1 0 8 6 2 44444444 77 0 5 66 000 5 444444444444444444444444444444444444444444 2 8888888 8888 4 6 3333333 1 66 1 777 4 4 0000 77777 4 4 1 555 4 4 00000000000000000000000000 222222 44444444444 6 66 6 1 111 3333333 99 6666666 4 22222 4 3 11111111111111111111111111111111111 555 7777 555 44 22 888888888 44 444 3 3 55 777777 5 00000 44444444444444444444444444444444444444444444444444444444444444444444444444444 4 3 000000000000000000 333 2 33 33 22222 33333 88888888 2 77777 7777777777777 77 22 99999 7777 7777777777 6666666 99999999 999 3 22
lowQualScore : .. . . . . ............. .... . . ... ... ............................. ... . . . . . ........ .. . . .. ... . .......................................... . ....... .... . . ....... . .. . ... . . .... ..... . . . ... . . .......................... ...... ........... . .. . . ... ....... .. ....... . ..... . . ................................... ... .... ... .. .. ......... .. ... . . .. ...... . ..... ............................................................................. . . .................. ... . .. .. ..... ..... ........ . ..... ............. .. .. ..... .... .......... ....... ........ ... . ..
lowQualScore : 00 3 6 6 6 6666666666666 7777 6 0 888 888 11111111111111111111111111111 111 4 1 3 6 1 99999999 22 1 0 66 000 7 777777777777777777777777777777777777777777 5 1111111 9999 4 9 9999999 0 11 7 888 4 4 3333 88888 4 4 8 333 4 4 77777777777777777777777777 111111 44444444444 9 11 0 0 000 0000000 00 2222222 0 99999 1 6 00000000000000000000000000000000000 888 1111 888 66 22 888888888 66 222 6 6 00 555555 7 00000 66666666666666666666666666666666666666666666666666666666666666666666666666666 0 6 555555555555555555 888 9 99 99 11111 33333 55555555 2 11111 3333333333333 55 99 11111 7777 5555555555 8888888 00000000 000 8 66
consensus : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT---TC-T---C---ACGGGTCCA-TAA-TT--ATTAGTTC-GATTGATCGCTCAAANATCGANTNAGCT------CGAAGAT-TTTGT-CAAACCATCGT---TGTACA-TA--T-----GACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTTN---GGAGC-TG--GAAAA-TAAC-ATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---A---T-CG----TCAT-----AAAAAAATCATGTAATTTGGGGA-C-TTC--AG-AATTTCNAAT--TGTT-TGTTT---AA-------A-TTT------GGAA-AGAAC-A-CCCCCTTAACGTTT-T-CATA--G-TACAC----G-TATA--AT-A-----CTAACTCG---TT----AT---A--ACGAGATAATTAA-TTC-GT--TATAACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------A-----T-TA---ACTCGTCGTT-ATA-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ACTA----------T--AACT---CGTTA-T--AAC--G-----AGAT--A-NTAA--------CTCGTTAT-A--A--CGAGATAA----------CTAA--CTCGTTAT--AACGAGTTA--A-TTTTTTTGTTATTTTTT-CTT----T-TTTT-------TC----A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
Reference ( family-375 ) : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTT---GTCCT---TT-T---C---ACGGGTCCAGTAA-TT--ATTAGTTC-GATTGATCGCTCAAATATCGANTTAGCT------CGAAGAT-TTTGT-CAAACNATTGT---TGTACA-TACGT-----GACTAGGTATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTTN---GGAGC-TG--GAAAA-TAAC-ATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---A---T-CG----TCAT-----NAAAAAATCATGTAATTTGGGGA-C-TNC--AG-AATTTCNAAT--TGTT-TNTTT---AA-------A-NTT------GGAA-AGAAC-A-CACCTTTAACGTTT-TACATA--ACTACAC-TT-GTTATA--ATAA-----CTAACTCG---TT----AT---A--ACGAGATAATTAATTTC-GT--TATAACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATNNT--TAACTCGTTA-----TAACGAGATA-CTA------A-----T-TA---ACTCGTCGTT-ATA-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ACTA----------T--AACT---CGTTA-T--AAC--G-----AGAT--A-CTAA--------CTCGTTAT-A--A--CGAGATAA----------TTAA--CTCGTTAT--AACGAGTTA--ACTTTTTTTGTTATTTTTT-CTT----T-TTTT-------TC----A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|1 : TTTGAAATCTTAAA--TTGT-AAGG-GG-GAG------------TG----GGTCAACGAGTTTTT---GTCCT---TC-T---C---A-------------TT---TCAGTTCTG--TGATTGC-CAAAGATCGAGTAAGCT------TGAAGAT----------------GT---TGTACA-TA---------------TTTT---------------------G-ACAATGGAACAATATTCAGTACTTTT----GTTG-AATAAAGAAATCTAATTATAGATC--GTCGC---CTTTTCA-TTT-TCTT---TGAGC-TGCGGAAAA-TAAC-ATTTTCTAG-CCATTTTTACGACAAA-TAAATAATCTTAC--------TTA---A---TGCGTTTATCAT-----AAGAAAATAATGTAATTTGGGGA-C-TTCCAAG-AATTTC--ATTATGTTCTGTTT---AA-------A-TTTTCAATAGAAA-AAAAC-----CCTTTAACGTTT-T-CATA--
gi|12 : taaatcattacaaagacgtatcttacggaacctcttgttccttgaaatctttaaatcaagtgtagtgcaaatttagaattacatgtacttaaggaataaaagaaaaatcataagtaaacgttacaagaaactgaaaatgatttaatctagattttttcaagtttataaactccgtgatattttgtagaaatacatgaaatataaatcacaatatttgaataccttttgtcgtttggtattggtcaacagaaagaagctactcttgtcttagtcagcccgcatttacatttataacagagataaaatattttttgtaattgaaggctataactgaaaacgaagtataatgccagtaataattttcttgccagacaaatatctgctgtatgtacatggttatataccttcaatgaatggttgatcatttattggtgaattgacaaagcagttcgcgtacagtgtactactgttttttcaaagtgagagtgggtggcggcgcgcagtcttacgagaagtgtgatgttaaaattgtccataatactcgacaggcaaaatacaagagaaattgtaatatctaagtaaggctaaacttcaacatcctggacagtgttggaaaggggagggggggggggggggaacaaaaaagccacaaaaaactagaaaatctttatttactcgaacGCT------CGAAGAT-TTTGT-CAAACAATTGT---TGTACA-T---------GACTAG---TT--AA--CGATA-A--TATTTTG-ACAATGGAA-GAT---CAGTACTCTT----GTTG-AATATTAGAA-------ATAAATC--GTCAC---CTTTTCA-TTT-CTTA---GGAGC-TG--GAAA--TAAC---------------TTGTACGACGAA-TAAA-ATTCTTAC--------GTA---ATCTT-CA----TCAT-----AAAAAAATC--GTATTTTGGGGATT-TAA--AG-AATTTCAAAT--TGTT-TGTTT---AA-------ATTTT------TAAA-AAAACGA-C-CCCTTAACGCTT-T-CATA--G-------------AT------A-----CTAACTCG---TT----AT---A--TCGAGATACTTAAGTT--GT--TATAACG--AGATA-ATTAAT-TCGT-TAT--AACGAGATATA--TAAC
gi|13 : ---GTCCT---TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAATATCGACTTAGCT------C-AACAT-TTTGT-GAAACCATCGT---TGCACA-TACAT-----GATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTTA---AGAGC-TA--GAAAAATAAC-ATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GTG---A---T-CG----TCAT-----CAGCAAATCATGTAATTTAGGGA-TATGC--AG-AATTTCTAAT--TGTTATCTTTA--AA-------A-TTT------GGAG-AGAAC-
gi|14 : T---CAGTACTTTT----TTTTTAATAAAAGAA-------ATAGATC--GTCGC---CTTTTCA-TTT-CTTT---GGAGC-TG--GAAAA-TAAT-ATTTTCTAG-CCATTTTTACGACGAA-TAAA-TTTCTTAC--------CTA---A---T-CG----TTATCATTAAAAAAAATCATGTAATTTGGGGA-C-TTC--A--AGTTTCAAAT--TGTTCTGTTT---AA-------A-TTT------TCAATAGAAA-A-ACCCTTAAACGTTT-T-CA------CACAC---------------A-----CTAACTCG---TT----AT---A--ACGAGATAATTAA
gi|16 : CGAGATAACTA--------------TA---CCTTGTT--------C-G-AAAG------------------------AGAG-AAC-TCGTTAT-AAAGAGAT-ACTAGTTAACGCTTTCAAACT---CGTCA-TTTCAC--ATTT--A-AT--A-CTAA--------CTCGTTTC-A--A--CGAGAC------------TCAAG-CTCATTAT--AACGGGTTA--A-------TATTATTTGTT-CTTA---C-TTTT-------TC----A---AAAA--TGAGTCCA-C--CCGGCTTTCGTA
gi|17 : gACGAGATAAA--TAACTCTTTA-----GAATGAGATA-CTA------A-------------CTCGTTTTG-AT----G-AGAT------------------------C-TA-AAC-TCATTAT-AACGAGAT-AAT-----------T--AATT---CATTA------C--G-----AGAT--A-TTAA--------CTGGTTAA-A--A--CGAGAAAA----------CTAA--ATCGCTAG--AACGgaaa
gi|18 : --AGATA-GCAAAC-TCGA-TAT--AACGA-AGGTT--TAACT--TTAACTATTAACTTAATA-TTAGAAAATA-----TCTA---ACTCGT---T-A-A-C-C-AGAT------------------------AACT-AAA-TCGCTAT-AACGATAT-GAT-----------T--AGCC---CATTA-T--AAC--G-----ATAT--AATTAA--------TTCCTTAT-A--A--CGAGATAA----------TTAA--TTCATTAT--AACGtttaatcgaagtacttaatgtactgataaccggtactgtttaga
gi|19 : -TGTTT---AA-------A-TTTT-----GGAA-AGAAC-G-CCCC--TAACGTTT-TA-A-A--A---------------G--AT-A-----CTAACCCG---TT-----T---A--TCCAGATAATTAAATT--GTTATATAACG--AGATA-C-TAAC-TCGT-TATAAAACGAG-TTAT--TA
gi|19 : CGTTTT-AA-AAGAT-ACTA--------------ACC---CGTT--T--ATC--C-----AGAT--AATTAA--------ATTGTTAT-ATAA--CGAGATA-----------CTAA--CTCGTTATAAAACGAGTTATTATTTTTTTTTTT-TATTAT-CAT----T-TTTT-------T----------AA---TGAGCCCA-G--CCGGCTTTCGTAttttttttttttattatcatttttttaatgagcccagccggctttcgtaa
gi|2 : tgtttaaattttggaaagaacgcccctaaACCTTAAA--TTGT-AAGG-GG-GGGGGGGCGGGATGGTGCAGTGGT-AACGA-TCTGT---GTCCT---TC-T---C---Aa
gi|2 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggTGGAACAATATTCAGTACTTTT----GTTG-AATAAA-GAA-------ATAGATC--ATCGC---CTTT-CA-TTTACTTGTGAGGAGCGTG--GAAAA-TAACCATTTGTGAG-CCATTAGTACGACGAA-GAAA-CTTCAATC--------GTT---A---T-CG------AT-----CAAAAAATCATG-AATTTAGCGA-C-TTC--TC-TATTTCAAAT--TGTT-TCTTTTAAAATATGTTCA-ATT------AGAA-AAAG-----ACCTTTAACGTTTCTACCAC--ACTACACATC-GTTATA--AC-------------CG---T-----A----A--ACAAGATAATTAAT----GTA-TGTAACGCAGGATA-ATTAACATCGTGTAT--AAC-AGATAAT--TAACTCG-TA-----TTGCGGGA-----A------A-----T-TA-----TCAT-GTTCATA-TAG-AGACATGATGATAGAGGTGCTGGAAACGAATT-AAT-TC--TATAAACGACACAAATA----------T--ACGTG--CGTTA-T--AAC--GAGTATAGAT--A-GTAATACGAGATTTCGTTATCA--AGGCGAGATAA----------TCAAT-CTCGTTAT--AACGAG-TA--ATTTTTATTttttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggactggaacaatattcagtacttttgttgaataaagaaatagatcatcgcctttcatttacttgtgaggagcgtggaaaataaccatttgtgagccattagtacgacgaagaaacttcaatcgttatcgatcaaaaaatcatgaatttagcgacttctctatttcaaattgtttcttttaaaatatgttcaattagaaaaagacctttaacgtttctaccacactacacatcgttataaccgtaaacaagataattaatgtatgtaacgcaggataattaacatcgtgtataacagataattaactcgtattgcgggaaattatcatgttcatatagagacatgatgatagaggtgctggaaacgaattaattctataaacgacacaaatatacgtgcgttataacgagtatagatagtaatacgagatttcgttatcaaggcgagataatcaatctcgttataacgagtaatttttatta
gi|21 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggaccttaaattgtaagggggggggggcgggatggtgcagtggtaacgatctgtgtccttctcattttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggacC-TCGTTAT-AACG-GAT-A--A----------T--AACT---CGTTAAT--AACCCG-----AGATTAA-GTAA--------CTAGTTAT-AT-AT-CGA-ATA-----------CTAA--CTCGTTA---AACGAGTTA--A--TTTTTTGTAAATTTTT---------------------TC----A---AAAAAATGAGCTCA-G--CAGGCTTTCGTAa
gi|22 : ATTTGAAATTTTAAA--TTGT-AAGG-GG-AAG------------TG----GGT-AACGAGTTTTT---GTCCT---TC-T---C---Agttacatgtatgt
gi|23 : gtaaggctaaacttcaacatcctggaaaagtgtggaagggggggggggagagaacacgtaaactagacatctttactcaaA----------T--AACTACCTGTAA-T--AAC--A-----TGAT--A-ATAA--------CTCGTTAT-A--T--GGCGATGA----------ATAA--CTGTTTAT--------TTA----TTTATTTTTTATTTTTT-TTT----T-TTTTGTATTCTTC----A---AAA---TGAGCCCA-T--CTAGCTTCCt
gi|24 : ttcA----------T--AACTACCTGTAA-T--AAC--A-----TGAT--A-ATAA--------CTCGTTAT-A--T--GGCGATGA----------ATAA--CTGTTTAT--------TTA--TTTATTTTTATTTTTTTTT-TTT----TATTCT-------TC----A---AAA---TGAGCCCA-T--CTAGCTTCCta
gi|25 : ttcGAAATCTTAAA--TTGT-AAGG-G------------------G----GGT-AACGAGTTTTT---GTCAT---TC-T---C---Ata
gi|26 : aaggctaaacaacagtgtgtggaaaggggggggggggcacaaaaacctagaaatctttactcgaactctTTCGAGATCTTAAA--TCAT-GAGG-GG-GAG------------GG----ACT-AACAAGACTTC---ATCCT---TC-TCTAC---ACGGGTCCAAT---TC--ATTAtt
gi|27 : ggcacaaaacataaattataagacgttttcactcaaatTTA-T--AAC--G-----ATAT--A-TTAA--------TTCCTTAG-A--C--CGAAATAATAAGCTCGCTTTAA--CTCGTTAT--AACGAGCTG--A-------------TTTTT-C------T-CTCT-------TC----AAATAAA---TAAGCCAA-AGTCCGGCCTTCGT
gi|28 : -TCGTTAA-AATGAGAT-ACTA--------------ACT---CGTTT-T--AAC--G-----AGAC--T-CTAT--------GTCGCAAT-A--A--CGAAATA------------------TTGTTAT--TATGCG-----ACATTTTTTGt
gi|29 : aatgagttagcagt-TCGT-TAT--AACGAAATAAT--GCACTTGTTA-----TAACGAGA----CA------A-----T-TA---A---ATCGTT-ATATC-T-CGAT------------------------AATT-AAC-TCTTTAC-AACGAGAGAAC------------T--AACC---CGTTA-T--AAC--G-----AAAT--A-actgaaatgtgaga
gi|3 : TTTGAAATCTTAAA--T----GAAG-GG-GAG------------TG----GGT-AACGAGTTTTT---G-CCT---TC-T---C---------------A-TT---TT-GTTC-AGTTGATTGCTCAAAGATCGAGTAAGCT------TGAAGATGTTTGA-CA
gi|32 : tcattacaaagacgtatcttacggaaccgttataggaccatctcttgttcctgaaatctttaaatcaagtgtagcagtttagaattacatgtactttagaaataaaagaaaaatgataagtaacgttacaatatactgaaaatgtattaatatagatttttccaagtttataaactcgatttttgtagaaatacatgtaaaataaatcaccacagtacattactttacagatgtttgtaagtttatatttaactcatctacatatataattatttgaatcaaatctgctcttgtcgtaatcagcccgcatttacatttataaatagatacatattttttgtaattgaaggcataaactgaaaatgaagtacatgcagtaataattttcttttccagacaaatatctgttgaatggttgatcatatattggtgaattgacattgtacggtcgcgtacatgtactactgtttttcaaagtgaggtgggtggggggtgcagtcttatgaaaagttgagtttacaattgtccataatactcgacaggacaggcaaaatataagagaaatttttatctaactaaggctaaacttcaacatcctggaaagtgtgggggcaaagagcacaaaacactcgagatctttactcgaacTAA--------CTCGTTAT-A--A--CGAGATAA----------TTAT--CCCGTTAT--AACGAGTT-----TTTTTTT-TTGTTTTT---TT----T-TCCT-------CCA---A---AAA---TGAGCCAA-G--CCGGCTTTCGTAtatgttttgacaatggaacaattttcgttttaaattttcaatataaaa
gi|33 : -----CTATCTCG---TT----AT---ATTGCGAG-TAATTAA-TTC-AG--TAAAACG--AAATATATTACT-TCAT-TAT--ACCAATATAAT--TCTTTCCTTA-----TAATGAGGTA-
gi|34 : --------CTCGTTAT-A--A--CGAGATAA----------CTAG--CTTGTTAT--AACGAGTTA--ATTTTTTT--TTAATTTTT-C--------------------CA---A---AAA---TGAGCCCA-G--CTGGCTTTCGTAa
gi|35 : atAGATAGT---ATCTCGTTA-----AATCGAGATT-ATA------A-----T-TACTAGCTCGTCATT-ATA-A-GGAGAT------------------------A--T-GATGTCGTTAT-AACGAGAT-GTTA----------aaa
gi|35 : TTATA--ATTA-----CTAGCTCGTCATT----AT---A--AGGAGATA--TGATGTC-GT--TATAACG--AGATG-TTgtga
gi|36 : agatagtatctcgttaaatcgagaAAATCTTAAA--TTGT-AAGGTGGTGGG------------TG----GG--GGCTGGTA--C---GTCCTACCCT-G---C---ATGGGTTCA--AA-TC--ACCAGTTagtga
gi|37 : aA--------CTTGTTGC-A--A--CGAGATA-----------CTAA--CTCGTTAT--AATGAGTTA--A----------------TT-CTT----T-CTTC-------CA----A---AAA---TGAGCCCA-G--CCGGCTTTCGTAtaaaattgc
gi|39 : GTTAT--AACGTGTTA--ACTTTTTTTGTTATTTTTTGCTT----T-TTTT-------TC---------AA---TGAGCCCATG--CGGGCTTTCGTc
gi|4 : ATTTAAGATTTTAAAAATCGTTAAGT-GG-AAA------------GG----GGT-AATGAGCGTAT---GTCCT---TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAATATCGACTTAGCT------C-AACAT-TTTGT-GAAACCATCGT---TGCACA-TACAT-----GATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTTA---AGAGC-TA--GAAAA-TAAC-ATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GTA-------T-CG----TCAT-----CAGCAAATCATGTAATTTAGGGA-TATGC--AG-AATTTCTAAT--TGTTATCTTT---AA-------A-ATT------GGAG-AGAAC-A-CACCTTTAACGTCT-TACATA--ATTACAC-TTTGGTATA--ATAA-----CTAACTC----TT----AT---A--ACGAGGCAATTAATTTCAGT--TCTAACG--AGATA-CTTAGA-TCGT-TAT--AACGAGATTTT--TAAGTCG--A-----TAACGAGATG-CTAC-----A-----TGTA---ATTTGTTGTT-ATA-C-G-AGAT------------------------AATT-AAC-TCGATA--AACGAGGT-ACTGCAAG------T--AACT---CGTTA-T--AAT--G-----AGAT--A-CTAA--------CTCGTTGT-A--A--CGAGATAA----------CCAA--ATAGTTAT--AACGTGTTA--ACTTTTTTTGTTATTTTTTGCTT----T-TTTT-------TC---------AA---TGAGCCCATG--CGGGCTTTCGTA
gi|40 : gtAACGTTT-T-CATA------CAC-CT-------------------TAACTCG---TT----AT---A--ACAAGGTAAGCAA-TTC-GT--TATAACG--AGATA-TT
gi|42 : ATTTTTT-TTT----TATTTT-------TCTCCAA---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|43 : AA--------ATCGTTGT-A--A--CGAGATAA----------CTAA--CTCGTTAT--AAcaca
gi|43 : TTAT-A--A--CGAGTTAG----------TTAT--CTCGTTAC--AACGATTT-----TTTTTTTGTT-TTTTtttttttgtttttt
gi|45 : TTT-TTT----A-TTTT-------TCCA--A---AAA---TTAGCCCA-G--CCGGCTTTCGTA
gi|46 : TT-TTT----T-TTCT-------TCCA--A---AAA---TGAGCCCA-G--TCGGCTTTCGTAcaca
gi|47 : ----A---AAA---TGAGCCCA-G--CCGGCTTTga
gi|48 : ccaT-TTT----T-TTTT-------TC----A---AAAA--TGAGCTCA-G--CCGGCTTTCtaattcgtaagtatact
gi|49 : T----T-TTTT-------TC----A---AAAA--TGAGCTCA-G--ACGGCTTTCGTct
gi|5 : ACTTGAAATCTTAA---TTGT-AAGG-GG-GAA-------------G----GGT-A-CGAGTTTTTATTGTCCT---TC-T---C---A-------------TT---TTAGTGC-AGTTGATTGCTCAAG-ATCGA--TAAGT------TGAAGAG-CT-GTACATACT-TTGAAAATGTACAATA-----------TAG-TATTTTGAA-TGA--------------ATGATG------T---C-GTTCATTT----TTTG-GA---GCGGATACT---ATATTTCTAGTCACACTTTTTTCAATTT-TTTT---GGTGC--G--GAAAA-TAAT-AATTTTTAGGCCATTTTTACGACGAAAGAAA-AATCTTACCGCTTAAAATG---A---T--A----TCAT-----AAAAAATTCA-GTAATTTGGGGA-C-TCA--AG-AATTTTTAAA--TTCC-TGTTA---AA-------A-TTT------TGAA-AGAAA-ACCA----TAAC-TTT-CATACA--CTTA-AC-TC-GTTATAAGATAA-----TTAATTCG---TTCAGCATATAA--ACGAGATAA-TAACT---GT--TATAAAG--AGATA-C-TAAC------TGT--AATAAGATAC---GAACACG-TA-----TAACG-GA-----A------A-----T-TA---ACTCGT
gi|50 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacga----A---AAA---TGAGCCCA-G--CCGGCTTTCCTAataaacagtaattttttttttcaaaaatg
gi|51 : ttccaTT----T-TTTT-------TCG---A---AAA---TGAGCTCA-G--CCGGCTTTCaga
gi|7 : TTCGAAGTCTTCAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTGTTT---GTCCT---TC-T---C---A--------------T--ATTAGTTC-AATTGATTGCTCAAAGATCGAATAAGCT------TGAAGAT-TTTGT-CAAACCATTGT---TGTACA-TA---------------TTTT---------------------G-ACAATGGAA-CAT---CAGTACTTTT----GTTG----------A-------ATAA---------C---CTTTTCA-T-------------------------------ATTT-CTTG-CCATTTTTACGACGAA-TGAA-TTTCTTAC--------GTATTGG---T-TA----TCAT-----AAAAAAATCATGCAATTTGGGGG-T-TTT--A-------------------TGTTT---AA-------ATTTT------AGAA-AGAAC-A-ACCCCTTAACGTTT-T-CATA--G-------------AT------A-----CTAACTCG---TT----AT---A--ACGAGATAATTAA-CTC-GT--TATACCG--AGATA-C-TAAC-CCGT-TAT--AACGAGTTAAT--T
gi|7 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacAGAT-ACTA--------------ACT---CGTTA-T--AAC--G-----AGATA-A-TTAA--------CTCGTTAT-A--C--CGAGAT-A----------CTAA--CCCGTTAT--AACGAGTTA--A--TTTTTTA--ATTTTT---TT----T-TTTT-------TCA---A---AAA---TGAGCCCA-G--CCGGCTTTCGTAttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|8 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatTTCAAAATCTTAAA--TCGT-AAGG-GT-GAG------------TA----GGT-GACGAGTGTTC---GTCCT---TC-T---CTCCACGGGTCCAATA---T--ATCAGTTC-AACTGATTGCCCAAATATCGATGTAACTTGAAATCGAAGAT-ATTGT-CCAACAGGTGT---TGTATA-TATGTAAATTGACTAGATATC--AAA-C--CATA-ATTT---G-ACAATG-------------TATTTTT----GTTG-AATAAAAGAA-------A-ATATC--GCTAC---CTTTTCA-TTT-GTTA---GGAGC-TA--GAAAA-TAAC-ATTTTCTTG-TTATATTTATGACGAC-TAGA-ATTCTTAC--------GTA---A---T-CGTCA-TCAT-----CAAAAAATTATGTAACTAGGGGA-T-TTA--AATAATTTCTAAG--AGTT-TTGTG---AA-------A-TTT------GAAA-AGAAC-A-ACCCCTTAATGTTT-T-CATA--GATACA---------------AG-----CTAACTAG---TT----AT---A--ACGAGATAATT-------------TACCG--AGATA-C-TGAC-TCGT-TTT--AAAGAGATATTAAAAATTCCTTA-----TAACGATAT
gi|9 : aaacAACGTTT-T-CATAGTACTGC------GTTATA--ACGAGTTCTTTATCTCG---TT----CT---A--ACGAGATA-----CTTC-------TAACG--AAATA-ACTAAC-TCGT-TAT--AACGAGGTAGA--TAACTTGTTA-----TAATGAAATT-CTA------GTAATTT-TA---AAT--TCGTT-GTA-A-C-AAAT------------------------TATTCAAT-TCGTTAT-AATTATAT-AAT-----------T--AACT---C--TA-T--AAC--G-----AGATA-A-TTAA--------CTTGTTAT-A--A--CGAGAT-G----------TTAACTCTCGTTAT--ACCTAGTTA--GATATTTTTTTTTTTTATA-CTTAGGCC-TCTT-------TCA---A---AAA---CGAGCCCA-G--CCAACTTTCGCA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAATAATTACAATGCTATTACGGACGTTAAGGACCTCTTGATCTGAAATTGTTAAATCAGTGTAGCAGTTAAACTACATGTTAAGAATAAAAGAAACTATAATCAAGAAACGAAAATATATTTATCTAGTTTTTCCAAGTTACTAAATCCGTGATTATTTTTTGTAGAAATACAGTATAACCATGTGAATAAATCATCAGTACAACTTTGCAGTTTTTGAGTTATATATATAATCATTAATGTATATATTTGAAGACATTTTGTCGGTATTGTCAACGAAAGAAACAAAAGCGCTCTTCATATCGCCCGCATTTAATTATTCTTATAAAAGAGTTTTTTGTAATTGAAGGTTAAACTGAAAAGAAGTACATGGCAATAATAATTTCTTTGCCAACAATATGCTGTTAATGTATTACTTCATGAATGTTGATCATTTATGGGGTGAATGACAAGATCATTCGCGTAAGCGCTAGTTTCCAACAGTGAGGTGTGGGCGCAGTCTTATGAGATAAGTTTACAATTCTAGTATCGACAGGCAAAAACAAAG
Unaligned ( gi|10 ): AAATCAATACAAAGATGTATCTTACGGAACCGTTATAGGACGTTCTCTTGTTCCTGAAACCTTTAAATCAAGTGTAGCAATTGTAGAATTACATGTACTTACTGAAAATGTTTTAATCTATATTTTTACAAGTTTATAAACTTCATAATTATTTTGTGAAAATACATATAAACCTTGAAAAATAAATCATCACAGTACATTACTTTGCAGATGTTTGTGAGTTTATATACAACTCACCTACATGTATAATATTTGAATGTCTTTTGTCGTGGTATTGGCCAACAGAAAGAAATCAAATCTGCTCTTGTCTTGGTCAGCCCGCATTTACATTTATAACAGAGATACTTTTTTGTAAATAAAGGCATAAACTGAA
Unaligned ( gi|11 ): TATACTATTTGAAGACCTTTTGTCGTGGTATTGGTCAACAGAAAGAAATCAAAGCTGCTCTTTTCATAGTCAGCCCCGCATTTACATTATTTTATAACAGAGATTTTTTTGTAATTGAAGGCTTAAACTGAAAACGAAGTACATGCAATAATAATTTTCTTTGCCAGACAAATACCTGCTGTTACATGGTATATACCTTCATGAATGGTTGATCATTTATTGGGGTGAATTGACAAAGCATTCGCGTACATGCGCTACTGTTTTCCAAAGTGAGGTGGGTGGGGGCGCAGTCTTATGAGAAGTTGAGTTTACAATTGTCCTTAGTACTCGACAGGCAAAATACAAGAGAAATGT
Unaligned ( gi|15 ): TCAATTACATAACAGACGTAATCACAGGACACCGTTATAGCCATCTCTGTCCTGAAAAATCTTTAATACAAGGTGCAGTTTATAATACATGACTATTTACGAAAATAAAAGGAGAAATCATTAAGTAACGCTTACAAAAAACTGAAAATGTGTTTAAATTGAATATCTTGCAAGTTATAACTCGTGATTATTTTGTAAAT
Unaligned ( gi|20 ): TAAATCATTACAAATACGTATCTTACGGAACTGTTATAGGACCATCTCTTGTTCCTGAAATCTTTAAATCAAGTGTAGCAGTTTAGAATTACATGTACTTTAGAAATAAAAGAAAAATCATAAGTAACGTTACAATAAACTGAAAATGTTTTAATCTAGAT
Unaligned ( gi|30 ): TACAATGTCATTTTTTTTTTATCAGACAGCTATTTTTCTACTACATGGTATATCTTCACGAATGATTGTCATTAATTGATGAATTGACGTCAAGG
Unaligned ( gi|31 ): ATGTAAAATAAATCACCGACAGTACACTTGATTACGATGTTTGTAAGTTTATATTTAACTCATTCTACAGACATAGTATAATATTTGAATACC
Unaligned ( gi|38 ): AAACATCATACTCAAGTTTGAAATTATTCAATTTAAGGGGAGATGCATAACTGATGCTTCTGCCCTTTCATT
Unaligned ( gi|41 ): CAACTCATCTACATGTATAATACTTAAATATATGTTGTCGTGGTAAAAAAAAAAAAAACAA
Unaligned ( gi|44 ): ACTTCAACATCCTGGAAAGTGTGGGGGCAAATAGCACCAAAAAAACC
Unaligned ( gi|52 ): AATATTTTTAACATAGACACATTTCTATATTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 2222222222222 88888888888888888888888888 11111111 111 33333333333333333333333333333333333333333333 1111111 1111 2222222 1111 11111111 1111 1111111111 22222222 1111111 1 11111111 22222222 0000000000000000000000000000 111111111111111 111 11111 888888888888888888888888888888888888888888888888888888888888888888888888 333333333333333333 111 11111111 11 11111111111 11 1111
lowQualScore : 55 3 3 3 3 0000000000000 7777 3 1 7777 44 6 55555555555555555555555555 777 1 0 1 6 1 99999999 77 0 5 7777 000 88888888888888888888888888888888888888888888 2 8888888 8888 4 6 3333333 1 66 1 777 4 4 0000 77777 4 4 1 555 4 4 66666666 0000 4444444444 00000000 8 4444444 6 66 6 99 4 44444444 00000000 4 2 9 5 666 3 1 8888888888888888888888888888 555 000000000000000 666 44 555 3 3 55 7777 888 11111 55 0 666666666666666666666666666666666666666666666666666666666666666666666666 3 0 3 3 5 111111111111111111 333 2 33 33333333 22 1 5 88888888 2 77777 333 00000000000 33 2 22 2 6666 0 33 77 6666 2 4444 6666666 6666 333 999 3 22
lowQualScore : .. . . . . ............. .... . . .... .. . .......................... ... . . . . . ........ .. . . .... ... ............................................ . ....... .... . . ....... . .. . ... . . .... ..... . . . ... . . ........ .... .......... ........ . ....... . .. . .. . ........ ........ . . . . ... . . ............................ ... ............... ... .. ... . . .. .... ... ..... .. . ........................................................................ . . . . . .................. ... . .. ........ .. . . ........ . ..... ... ........... .. . .. . .... . .. .. .... . .... ....... .... ... ... . ..
lowQualScore : 00 3 6 6 6 6666666666666 7777 6 0 5555 66 7 22222222222222222222222222 111 4 1 0 6 0 11111111 22 1 0 1111 000 44444444444444444444444444444444444444444444 5 1111111 9999 4 9 9999999 0 11 7 888 4 4 3333 88888 4 4 8 333 4 4 11111111 4444 3333333333 77777777 9 7777777 9 11 0 55 0 55555555 22222222 0 5 4 4 444 6 4 2222222222222222222222222222 222 888888888888888 444 66 444 6 6 00 2222 666 11111 66 1 111111111111111111111111111111111111111111111111111111111111111111111111 6 5 3 3 9 222222222222222222 888 9 99 11111111 55 0 0 11111111 2 11111 999 22222222222 11 2 99 1 5555 7 99 22 6666 1 5555 8888888 9999 333 000 8 66
consensus : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA--AA-TT--ATTAGTTC-GATTGATCGCTCAAAGATCGANTNAGCT------CGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TT------G-GAA-AGAACAACCCCTTAACGTTT---T-CATAG-TAC-AC----------AT-A------CTAACTCGTTATA--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------A-----T-TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGA---TAA----------CT--AA-CTCGTTAT--AACGAGTTA--A-TTTTTTT-TTATTTTTT-CTT----T-TTT----T-------TC----A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
Reference ( family-375 ) : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA-TAA-TT--ATTAGTTC-GATTGATCGCTCAAANATCGANTNAGCT------CGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---NGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TT------G-GAA-AGAACACCCCCTTAACGTTT---T-CATAG-TAC-AC----G-TATAAT-A------CTAACTCGTTATA--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------A-----T-TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ACT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGA---TAA----------CT--AA-CTCGTTAT--AACGAGTTA--A-TTTTTTTGTTATTTTTT-CTT----T-TTT----T-------TC----A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|1 : TTTGAAATCTTAAA--TTGT-AAGG-GG-GAG------------TG----GGTCAACGAGTTTTT---GTCCT--TC-T---C---A-------------TT---TCAGTTCTG--TGATTGC-CAAAGATCGAGTAAGCT------TGAAGAT----------------GT---TGTACATA--T----------------TT-----------------T---G-ACAATGGAACAATATTCAGTACTTTT----GTTG-AATAAAGAAATCTAATTATAGATC--GTCGC---CTTTTCA-TTT-TCT---TTGAGC-TGCGGAAAA-TAA-CATTTTCTAG-CCATTTTTACGACAAA-TAAATAATCTTAC--------TTA---ATGC---GTTTATCAT-----A--AGAAAATAATGTAATTTGGGGAC-TTCCAA-G-AATTTC--ATTATGTTCTGTTT--AAA-T--------TTTCAATAG-AAA-AAAA---CCCTTTAACGTTT---T-CATA
gi|12 : taaatcattacaaagacgtatcttacggaacctcttgttccttgaaatctttaaatcaagtgtagtgcaaatttagaattacatgtacttaaggaataaaagaaaaatcataagtaaacgttacaagaaactgaaaatgatttaatctagattttttcaagtttataaactccgtgatattttgtagaaatacatgaaatataaatcacaatatttgaataccttttgtcgtttggtattggtcaacagaaagaagctactcttgtcttagtcagcccgcatttacatttataacagagataaaatattttttgtaattgaaggctataactgaaaacgaagtataatgccagtaataattttcttgccagacaaatatctgctgtatgtacatggttatataccttcaatgaatggttgatcatttattggtgaattgacaaagcagttcgcgtacagtgtactactgttttttcaaagtgagagtgggtggcggcgcgcagtcttacgagaagtgtgatgttaaaattgtccataatactcgacaggcaaaatacaagagaaattgtaatatctaagtaaggctaaacttcaacatcctggacagtgttggaaaggggagggggggggggggggaacaaaaaagccacaaaaaactagaaaatctttatttactcgaacGCT------CGAAGAT-TTTGT-CAAACAATTGT---TGTACAT----G-------ACTAG-T--T--AA--CGATA-A--TATTTTG-ACAATGGAA-GAT---CAGTACTCTT----GTTG-AATATTAGAA-------ATAAATC--GTCAC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAA--TAA-C--------------TTGTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-CTTCA----TCAT-----A--AAAAAATC--GTATTTTGGGGAT-TTA--AAG-AATTTCAAAT--TGTT-TGTTT--AAA-T--------TT------TTAAA-AAAACGACCCCTTAACGCTT---T-CATAG-----------------AT-A------CTAACTCGTTATA--TCGAGATACTTAAGTT--GT--T----AT---AACG--AGATA-ATTAAT-TCGT-TAT--AACGAGATATA--TAAC
gi|13 : ---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAATATCGACTTAGCT------C-AACAT-TTTGT-GAAACCATCGT---TGCACATACATG-------ATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAAATAA-CATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GTG---AT-C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATGC--A-G-AATTTCTAAT--TGTTATCTTTA-AAA-T--------TT------G-GAG-AGAAC
gi|14 : T---CAGTACTTTT----TTTTTAATAAAAGAA-------ATAGATC--GTCGC---CTTTTCA-TTT-CTT---TGGAGC-TG--GAAAA-TAA-TATTTTCTAG-CCATTTTTACGACGAA-TAAA-TTTCTTAC--------CTA---AT-C---G----TTATCATTAA--AAAAAATCATGTAATTTGGGGAC-TTC--A---AGTTTCAAAT--TGTTCTGTTT--AAA-T--------TT------T-CAATAGAAAAACCCTTAAACGTTT---T-C------AC-AC----------AC-A------CTAACTCGTTATA--ACGAGATAATTAA
gi|16 : CGAGATAACTA--------------TA---CCTTGTT---------C-G-AAAG------------------------AGAG-AAC-TCGTTAT-AAAGAGAT-ACT----AGTTAACGCTTTCAAACT---CGTCA-TTTCAC--ATTT--A-AT--ACT-AA--------CTCGTTTC-A--A--CGAGA----------------CTCAAG-CTCATTAT--AACGGGTTA--A-T------ATTATTTGTT-CTTA---C-TTT----T-------TC----A---AAAA--TGAGTCCA-C--CCGGCTTTCGTA
gi|17 : gACGAGATAAA--TAACTCTTTA-----GAATGAGATA-CTA------A-------------CTCGTTTTG-AT-----G-AGAT------------------------C-TA-AAC-TCATTAT-AACGAGAT-AAT---------------T--AATT---CATTA------C--G-----AGAT--ATT-AA--------CTGGTTAA-A--A--CGAGA---AAA----------CT--AA-ATCGCTAG--AACG-TTTA--A-Tgaaa
gi|18 : --AGATA-GCAAAC-TCGA-TAT--AACGA-AGGTT--TAACT--TTAACTATTAACTTAATA-TTAGAAAATA-----TCTA---ACTCGT---T-A--A-C-C-AGAT------------------------AACT-AAA-TCGCTAT-AACGATAT-GAT---------------T--AGCC---CATTA-T--AAC--G-----ATAT--AATTAA--------TTCCTTAT-A--A--CGAGA---TAA----------TT--AA-TTCATTAT--AACGcgaagtacttaatgtactgataaccggtactgtttaga
gi|19 : -TGTTT--AAA-T--------TTT-----G-GAA-AGAACGCCCC--TAACGTTT---T-AAAAG-----------------AT-A------CTAACCCGTT-TA--TCCAGATAATTAAATT--GTTAT----AT---AACG--AGATA-C-TAAC-TCGT-TATAAAACGAGTTATT--
gi|19 : CGTTTT-AA-AAGAT-ACT----A--------------ACC---CGTT--T--ATC--C-----AGAT--AATTAA--------ATTGTTAT-ATAA--CGAGA---T-A----------CT--AA-CTCGTTATAAAACGAGTTATTA-TTTTTTTTTTTTATTAT-CAT----T-TTT----T-------T----------AA---TGAGCCCA-G--CCGGCTTTCGTAattttttttttttattatcatttttttaatgagcccagccggctttcgtaa
gi|2 : tgtttaaattttggaaagaacgcccctaaACCTTAAA--TTGT-AAGG-GG-GGGGGGGCGGGATGGTGCAGTGGT-AACGA-TCTGT---GTCCT--TC-T---C---Aa
gi|2 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggTGGAACAATATTCAGTACTTTT----GTTG-AATAAA-GAA-------ATAGATC--ATCGC---C-TTTCA-TTTACTTGTGAGGAGCGTG--GAAAA-TAACCATTTGTGAG-CCATTAGTACGACGAA-GAAA-CTTCAATC--------GTT---AT-C---G------AT-----C--AAAAAATCATG-AATTTAGCGAC-TTC--T-C-TATTTCAAAT--TGTT-TCTTTTAAAA-TATGTTCAATT------A-GAA-A-AAGA--CCTTTAACGTTTCTAC-CACAC-TAC-AC-------ATCGT-T------ATAAC-CG-TA-A--ACAAGATAATTAAT----GTA-T----GT---AACGCAGGATA-ATTAACATCGTGTAT--AAC-AGATAAT--TAACTCG-TA-----TTGCGGGA-----A------A-----T-TA-----TCAT-GTTCAT-A-TAG-AGACATGATGATAGAGGTGCTGGAAACGAATT-AAT-TC--TATAAACGACACAAAT----A----------T--ACGTG--CGTTA-T--AAC--GAGTATAGAT--AGT-AATACGAGATTTCGTTATCA--AGGCGAGA---TAA----------TC--AATCTCGTTAT--AACGAG-TA--A-TTTTTttttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggactggaacaatattcagtacttttgttgaataaagaaatagatcatcgcctttcatttacttgtgaggagcgtggaaaataaccatttgtgagccattagtacgacgaagaaacttcaatcgttatcgatcaaaaaatcatgaatttagcgacttctctatttcaaattgtttcttttaaaatatgttcaattagaaaaagacctttaacgtttctaccacactacacatcgttataaccgtaaacaagataattaatgtatgtaacgcaggataattaacatcgtgtataacagataattaactcgtattgcgggaaattatcatgttcatatagagacatgatgatagaggtgctggaaacgaattaattctataaacgacacaaatatacgtgcgttataacgagtatagatagtaatacgagatttcgttatcaaggcgagataatcaatctcgttataacgagtaatttttatta
gi|21 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggaccttaaattgtaagggggggggggcgggatggtgcagtggtaacgatctgtgtccttctcattttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggacC-TCGTTAT-AACG-GAT-A------A----------T--AACT---CGTTAAT--AACCCG-----AGATTAAGT-AA--------CTAGTTAT-AT-AT-CGA-A---TA-----------CT--AA-CTCGTTA---AACGAGTTA--A-TTTTTT-GTAAATTTTT-------------------------TC----A---AAAAAATGAGCTCA-G--CAGGCTTTCGTAatta
gi|22 : ATTTGAAATTTTAAA--TTGT-AAGG-GG-AAG------------TG----GGT-AACGAGTTTTT---GTCCT--TC-T---C---Agttacatgtatgt
gi|23 : gtaaggctaaacttcaacatcctggaaaagtgtggaagggggggggggagagaacacgtaaactagacatctttactcaa----A----------T--AACTACCTGTAA-T--AAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGA---TGA----------AT--AA-CT-GTT-T--A-----TTT--A-TTTATTTTTTATTTTTT-TTT----T-TTT----TGTATTCTTC----A---AAA---TGAGCCCA-T--CTAGCTTCCt
gi|24 : ttc----A----------T--AACTACCTGTAA-T--AAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGA---TGA----------AT--AA-CT-GTT-T--A-----TTT--A-TTTATTT-TTATTTTTT-TTT----T-TTTATTCT-------TC----A---AAA---TGAGCCCA-T--CTAGCTTCCta
gi|25 : ttcGAAATCTTAAA--TTGT-AAGG-G------------------G----GGT-AACGAGTTTTT---GTCAT--TC-T---C---Ata
gi|26 : aaggctaaacaacagtgtgtggaaaggggggggggggcacaaaaacctagaaatctttactcgaactctTTCGAGATCTTAAA--TCAT-GAGG-GG-GAG------------GG----ACT-AACAAGACTTC---ATCCT--TC-TCTAC---ACGGGTCC---AA-TTC-ATTAtt
gi|27 : ggcacaaaacataaattataagacgttttcactcaaatTTA-T--AAC--G-----ATAT--ATT-AA--------TTCCTTAG-A--C--CGAAA---TAATAAGCTCGCTTT--AA-CTCGTTAT--AACGAGCTG--A-TTTT---------------TC----T-CTC----T-------TC----AAATAAA---TAAGCCAA-AGTCCGGCCTTCGT
gi|28 : -TCGTTAA-AATGAGAT-ACT----A--------------ACT---CGTTT-T--AAC--G-----AGAC--TCT-AT--------GTCGCAAT-A--A--CGAAA---TA-------------------TTGTTAT--TATGCGACA-----TTTTTTGt
gi|29 : aatgagttagcagtTCGTT-AT-AAC-G-AAAT------------------------AATG-CAC-TTGTTAT-AACGAGAC-AAT---------------T--AAAT---CGTTA-T--ATC--T-----CGATA-ATT-AA--------CTCTTTAC-A--A--CGAGA---GAA----------CT--AA-CCCGTTAT--AACGAactgaaatgtgaga
gi|3 : TTTGAAATCTTAAA--T----GAAG-GG-GAG------------TG----GGT-AACGAGTTTTT---G-CCT--TC-T---C---------------A-TT---TT-GTTC-AGTTGATTGCTCAAAGATCGAGTAAGCT------TGAAGATGTTTGA-CAaata
gi|32 : tcattacaaagacgtatcttacggaaccgttataggaccatctcttgttcctgaaatctttaaatcaagtgtagcagtttagaattacatgtactttagaaataaaagaaaaatgataagtaacgttacaatatactgaaaatgtattaatatagatttttccaagtttataaactcgatttttgtagaaatacatgtaaaataaatcaccacagtacattactttacagatgtttgtaagtttatatttaactcatctacatatataattatttgaatcaaatctgctcttgtcgtaatcagcccgcatttacatttataaatagatacatattttttgtaattgaaggcataaactgaaaatgaagtacatgcagtaataattttcttttccagacaaatatctgttgaatggttgatcatatattggtgaattgacattgtacggtcgcgtacatgtactactgtttttcaaagtgaggtgggtggggggtgcagtcttatgaaaagttgagtttacaattgtccataatactcgacaggacaggcaaaatataagagaaatttttatctaactaaggctaaacttcaacatcctggaaagtgtgggggcaaagagcacaaaacactcgagatctttactcgaacT-AA--------CTCGTTAT-A--A--CGAGA---TAA----------TT--AT-CCCGTTAT--AACGAGTT-----TTTTTTT-TTGTTTTT---TT----T-TCC----T-------CCA---A---AAA---TGAGCCAA-G--CCGGCTTTCGTAtatgttttgacaatggaacaattttcgttttaaattttcaatataaaa
gi|33 : ------CTATCTCGTTATATTGCGAG-TAATTAATTC--AG--T----AA---AACG--AAATATATTACT-TCAT-TAT--ACCAATATAAT--TCTTTCCTTA-----TAATGAGGTA-
gi|34 : --------CTCGTTAT-A--A--CGAGA---TAA----------CT--AG-CTTGTTAT--AACGAGTTA--A-TTTTTTT-TTAATTTTT-C------------------------CA---A---AAA---TGAGCCCA-G--CTGGCTTTCGTAa
gi|35 : atAGATAGT---ATCTCGTTA-----AATCGAGATT-ATA------A-----T-TACTAGCTCGTCATT-AT-A-A-GGAGAT------------------------A--T-GATGTCGTTAT-AACGAGAT-GTT----A----------aaa
gi|36 : AAATCTTAAA--TTGT-AAGGTGGTGGG------------TG----GG--GGCTGGTA--C---GTCCTACCC-TG--C---ATGGGTTCA--AA-TC--ACCAGTTgtga
gi|37 : aA--------CTTGTTGC-A--A--CGAGA---TA-----------CT--AA-CTCGTTAT--AATGAGTTA--A----------------TT-CTT----T-CTT----C-------CA----A---AAA---TGAGCCCA-G--CCGGCTTTCGTAtaaaattgc
gi|39 : GTTAT--AACGTGTTA--ACTTTTTTTGTTATTTTTTGCTT----T-TTT----T-------TC----A---A-----TGAGCCCATG--CGGGCTTTCGTc
gi|4 : ATTTAAGATTTTAAAAATCGTTAAGT-GG-AAA------------GG----GGT-AATGAGCGTAT---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAATATCGACTTAGCT------C-AACAT-TTTGT-GAAACCATCGT---TGCACATACATG-------ATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAA-TAA-CATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GT----AT-C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATGC--A-G-AATTTCTAAT--TGTTATCTTT--AAA-A--------TT------G-GAG-AGAACACACCTTTAACGTCT---TACATAATTAC-ACTTTGG-TATAATAA------CTAACTC-TTATA--ACGAGGCAATTAATTTCAGT--T----CT---AACG--AGATA-CTTAGA-TCGT-TAT--AACGAGATTTT--TAAGTCG--A-----TAACGAGATG-CTAC-----A-----TGTA---ATTTGTTGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGATA--AACGAGGT-ACTGCAAG----------T--AACT---CGTTA-T--AAT--G-----AGAT--ACT-AA--------CTCGTTGT-A--A--CGAGA---TAA----------CC--AA-ATAGTTAT--AACGTGTTA--ACTTTTTTTGTTATTTTTTGCTT----T-TTT----T-------TC---------AA---TGAGCCCATG--CGGGCTTTCGTA
gi|40 : gtAACGTTT---T-CATA----C-AC----C-T--------------TAACTCGTTATA--ACAAGGTAAGCAATTC--GT--T----AT---AACG--AGATA-TT
gi|42 : ATTTTTT-TTT----TATTT----T-------TCTCCAA---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|43 : -AA--------ATCGTTGT-A--A--CGAGA---TAA----------CT--AA-CTCGTTAT--AAcaca
gi|43 : A--ACAAAAAAA--AAATC--GT--T----GT---AACG--AGATA-ACTAAC-TCGT-TAT--AAtttttttgtttttt
gi|45 : TTT-TTT----A-TTT----T-------TCCA--A---AAA---TTAGCCCA-G--CCGGCTTTCGTAtttt
gi|46 : TT-TTT----T-TTC----T-------TCCA--A---AAA---TGAGCCCA-G--TCGGCTTTCGTAcaca
gi|47 : ----A---AAA---TGAGCCCA-G--CCGGCTTTga
gi|48 : ccaT-TTT----T-TTT----T-------TC----A---AAAA--TGAGCTCA-G--CCGGCTTTCtaattcgtaagtatact
gi|49 : T----T-TTT----T-------TC----A---AAAA--TGAGCTCA-G--ACGGCTTTCGTct
gi|5 : ACTTGAAATCTTAA---TTGT-AAGG-GG-GAA-------------G----GGT-A-CGAGTTTTTATTGTCCT--TC-T---C---A-------------TT---TTAGTGC-AGTTGATTGCTCAA-GATCGA-TAAGTT-------GAAGAG-CT-GTACATACT-TTGAAAATGTACA-A--TA---------TAG-TATTTTGAA-TGA--------------ATGATG------T---C-GTTCATTT----TTTG-GA---GCGGATACT---ATATTTCTAGTCACACTTTTTTCAATTT-TTT---TGGTGC--G--GAAAA-TAA-TAATTTTTAGGCCATTTTTACGACGAAAGAAA-AATCTTACCGCTTAAAATG---AT-----A----TCAT-----A--AAAAATTCA-GTAATTTGGGGAC-TCA--A-G-AATTTTTAAA--TTCC-TGTTA--AAA-T--------TT------T-GAA-AGAAAACCA---TAAC--TT---T-CA----TAC-AC--------------------TTAACTCGTTATA-----AGATAATTAATTC--GT--TCAGCATATAAACG--AGATA-A-TAAC-T-GT-TAT--AAAGAGATAC---TAAC----TG-----TAATAAGATA-C----------------GA---ACACG----T-ATAA-C-G--GA-------------------------AATT-AAC-TCG-TAT-AA
gi|50 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacga----A---AAA---TGAGCCCA-G--CCGGCTTTCCTAacagtaattttttttttcaaaaatg
gi|51 : ttccaTT----T-TTT----T-------TCG---A---AAA---TGAGCTCA-G--CCGGCTTTCaga
gi|7 : TTCGAAGTCTTCAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTGTTT---GTCCT--TC-T---C---A--------------T--ATTAGTTC-AATTGATTGCTCAAAGATCGAATAAGCT------TGAAGAT-TTTGT-CAAACCATTGT---TGTACATA--T----------------TT-----------------T---G-ACAATGGAA-CAT---CAGTACTTTT----GTTG----------A-------ATAA---------C---CTTTTCA-T-------------------------------ATTT-CTTG-CCATTTTTACGACGAA-TGAA-TTTCTTAC--------GTATTGGT-T---A----TCAT-----A--AAAAAATCATGCAATTTGGGGGT-TTT--A--------------------TGTTT--AAATT--------TT------A-GAA-AGAACAACCCCTTAACGTTT---T-CATAG-----------------AT-A------CTAACTCGTTATA--ACGAGATAATTAACTC--GT--T----AT---ACCG--AGATA-C-TAAC-CCGT-TAT--AACGAGTTAAT--T
gi|7 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacAGAT-ACT----A--------------ACT---CGTTA-T--AAC--G-----AGATA-ATT-AA--------CTCGTTAT-A--C--CGAGA---T-A----------CT--AA-CCCGTTAT--AACGAGTTA--A-TTTT----TTAATTTTT-TTT----T-TTT----T-------CA----A---AAA---TGAGCCCA-G--CCGGCTTTCGTAttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|8 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatTTCAAAATCTTAAA--TCGT-AAGG-GT-GAG------------TA----GGT-GACGAGTGTTC---GTCCT--TC-T---CTCCACGGGTCCAATA---T--ATCAGTTC-AACTGATTGCCCAAATATCGATGTAACTTGAAATCGAAGAT-ATTGT-CCAACAGGTGT---TGTATATA--TGTAAATTGACTAGATATC--AAA-C--CATA-ATTT---G-ACAATG-------------TATTTTT----GTTG-AATAAAAGAA-------A-ATATC--GCTAC---CTTTTCA-TTT-GTT---AGGAGC-TA--GAAAA-TAA-CATTTTCTTG-TTATATTTATGACGAC-TAGA-ATTCTTAC--------GTA---AT-C---G----TCATC----ATCAAAAAATTATGTAACTAGGGGAT-TTA--A-ATAATTTCTAAG--AGTT-TTGTG--AAA-T--------TT------G-AAA-AGAACAACCCCTTAATGTTT---T-CATAGATAC-AA----G---------------CTAACTAGTTATA--ACGAGATAATT-----------------T---ACCG--AGATA-C-TGAC-TCGT-TTT--AAAGAGATATTAAAAATTCCTTA-----TAACGATAT
gi|9 : aaacAACGTTT---T-CATAG-TACTGC----GTTATAAC-GAGTTCTTTATCTCGTTCTA--ACGAGATA-------C---T--T----CT---AACG--AAATA-ACTAAC-TCGT-TAT--AACGAGGTAGA--TAACTTGTTA-----TAATGAAATT-CTA------GTAATTT-TA---AAT--TCGTT-GT-A-A-C-AAAT------------------------TATTCAAT-TCGTTAT-AATTATAT-AAT---------------T--AACT---C--TA-T--AAC--G-----AGATA-ATT-AA--------CTTGTTAT-A--A--CGAGATGTTAA----------CT-----CTCGTTAT--ACCTAGTTAG-A-TATTTTTTTTTTTTATA-CTTAGGCC-TCT----T-------TCA---A---AAA---CGAGCCCA-G--CCAACTTTCGCA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAATAATTACAATGCTATTACGGACGTTAAGGACCTCTTGATCTGAAATTGTTAAATCAGTGTAGCAGTTAAACTACATGTTAAGAATAAAAGAAACTATAATCAAGAAACGAAAATATATTTATCTAGTTTTTCCAAGTTACTAAATCCGTGATTATTTTTTGTAGAAATACAGTATAACCATGTGAATAAATCATCAGTACAACTTTGCAGTTTTTGAGTTATATATATAATCATTAATGTATATATTTGAAGACATTTTGTCGGTATTGTCAACGAAAGAAACAAAAGCGCTCTTCATATCGCCCGCATTTAATTATTCTTATAAAAGAGTTTTTTGTAATTGAAGGTTAAACTGAAAAGAAGTACATGGCAATAATAATTTCTTTGCCAACAATATGCTGTTAATGTATTACTTCATGAATGTTGATCATTTATGGGGTGAATGACAAGATCATTCGCGTAAGCGCTAGTTTCCAACAGTGAGGTGTGGGCGCAGTCTTATGAGATAAGTTTACAATTCTAGTATCGACAGGCAAAAACAAAG
Unaligned ( gi|10 ): AAATCAATACAAAGATGTATCTTACGGAACCGTTATAGGACGTTCTCTTGTTCCTGAAACCTTTAAATCAAGTGTAGCAATTGTAGAATTACATGTACTTACTGAAAATGTTTTAATCTATATTTTTACAAGTTTATAAACTTCATAATTATTTTGTGAAAATACATATAAACCTTGAAAAATAAATCATCACAGTACATTACTTTGCAGATGTTTGTGAGTTTATATACAACTCACCTACATGTATAATATTTGAATGTCTTTTGTCGTGGTATTGGCCAACAGAAAGAAATCAAATCTGCTCTTGTCTTGGTCAGCCCGCATTTACATTTATAACAGAGATACTTTTTTGTAAATAAAGGCATAAACTGAA
Unaligned ( gi|11 ): TATACTATTTGAAGACCTTTTGTCGTGGTATTGGTCAACAGAAAGAAATCAAAGCTGCTCTTTTCATAGTCAGCCCCGCATTTACATTATTTTATAACAGAGATTTTTTTGTAATTGAAGGCTTAAACTGAAAACGAAGTACATGCAATAATAATTTTCTTTGCCAGACAAATACCTGCTGTTACATGGTATATACCTTCATGAATGGTTGATCATTTATTGGGGTGAATTGACAAAGCATTCGCGTACATGCGCTACTGTTTTCCAAAGTGAGGTGGGTGGGGGCGCAGTCTTATGAGAAGTTGAGTTTACAATTGTCCTTAGTACTCGACAGGCAAAATACAAGAGAAATGT
Unaligned ( gi|15 ): TCAATTACATAACAGACGTAATCACAGGACACCGTTATAGCCATCTCTGTCCTGAAAAATCTTTAATACAAGGTGCAGTTTATAATACATGACTATTTACGAAAATAAAAGGAGAAATCATTAAGTAACGCTTACAAAAAACTGAAAATGTGTTTAAATTGAATATCTTGCAAGTTATAACTCGTGATTATTTTGTAAAT
Unaligned ( gi|20 ): TAAATCATTACAAATACGTATCTTACGGAACTGTTATAGGACCATCTCTTGTTCCTGAAATCTTTAAATCAAGTGTAGCAGTTTAGAATTACATGTACTTTAGAAATAAAAGAAAAATCATAAGTAACGTTACAATAAACTGAAAATGTTTTAATCTAGAT
Unaligned ( gi|30 ): TACAATGTCATTTTTTTTTTATCAGACAGCTATTTTTCTACTACATGGTATATCTTCACGAATGATTGTCATTAATTGATGAATTGACGTCAAGG
Unaligned ( gi|31 ): ATGTAAAATAAATCACCGACAGTACACTTGATTACGATGTTTGTAAGTTTATATTTAACTCATTCTACAGACATAGTATAATATTTGAATACC
Unaligned ( gi|38 ): AAACATCATACTCAAGTTTGAAATTATTCAATTTAAGGGGAGATGCATAACTGATGCTTCTGCCCTTTCATT
Unaligned ( gi|41 ): CAACTCATCTACATGTATAATACTTAAATATATGTTGTCGTGGTAAAAAAAAAAAAAACAA
Unaligned ( gi|44 ): ACTTCAACATCCTGGAAAGTGTGGGGGCAAATAGCACCAAAAAAACC
Unaligned ( gi|52 ): AATATTTTTAACATAGACACATTTCTATATTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 2222222222222 66666666666666666666666666 111 11111 11 11111111 111 33333333333333333333333333333333333333333333 1111111 1111 2222222 1111 11111111 1111 1111111111 22222222 1111111 1 11111111 111 111 666666666666666666666666666666 1111111 111111111111 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888888888 333333333333333333 111 11111111 1 111111111111 111111 111
lowQualScore : 55 3 3 3 3 0000000000000 7777 3 1 7777 44 6 22222222222222222222222222 000 2 5 22222 00 1 4 66666666 55 0 5 7777 000 88888888888888888888888888888888888888888888 2 8888888 8888 4 6 3333333 1 66 1 777 4 4 0000 77777 4 4 1 555 4 4 66666666 0000 4444444444 00000000 8 4444444 6 66 6 99 4 44444444 111 111 2 4 2 3 2 333333333333333333333333333333 3 3 0000000 44 2 44 000000000000 44 777 3 3 44 7777 77 00000 5555555555555555555555555555555555555555555555555555555555555555555555555555 4 1 3 3 4 111111111111111111 555 3 44 44444444 77 1 0 88888888 2 88888 444 000000000000 33 2 33 1 888 999999 2 66666666 4444 6666666 111111 222 3 22
lowQualScore : .. . . . . ............. .... . . .... .. . .......................... ... . . ..... .. . . ........ .. . . .... ... ............................................ . ....... .... . . ....... . .. . ... . . .... ..... . . . ... . . ........ .... .......... ........ . ....... . .. . .. . ........ ... ... . . . . . .............................. . . ....... .. . .. ............ .. ... . . .. .... .. ..... ............................................................................ . . . . . .................. ... . .. ........ .. . . ........ . ..... ... ............ .. . .. . ... ...... . ........ .... ....... ...... ... . ..
lowQualScore : 00 3 6 6 6 6666666666666 7777 6 0 5555 66 7 66666666666666666666666666 000 0 0 55555 99 0 4 66666666 44 1 0 1111 000 44444444444444444444444444444444444444444444 5 1111111 9999 4 9 9999999 0 11 7 888 4 4 1111 88888 4 4 8 333 4 4 11111111 4444 3333333333 77777777 9 7777777 9 11 0 55 0 55555555 222 000 5 6 7 6 2 333333333333333333333333333333 6 6 0000000 22 6 66 777777777777 22 444 3 3 66 2222 22 00000 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 6 6 5 000000000000000000 000 1 22 88888888 33 0 7 55555555 4 11111 111 999999999999 22 4 11 2 333 555555 4 88888888 5555 8888888 111111 999 8 66
consensus : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAGTTC-GATTGATTGCTCAAA-GATC-----GA-NTAAGC-T------CGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TT-N-GAA---AGAACAACCCCTTAACGTTTT-CATAG-TAC-AC------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------AT-----TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--CGAGTTA---ATTTTTTT--TTATTTTT-T-CTT----TTTT----T-------TC--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
Reference ( family-375 ) : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAGTTC-GATTGATCGCTCAAA-GATC-----GA-NTNAGC-T------CGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TT-G-GAA---AGAACAACCCCTTAACGTTTT-CATAG-TAC-AC------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------AT-----TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--CGAGTTA---ATTTTTTT--TTATTTTT-T-CTT----TTTT----T-------TC--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|1 : TTTGAAATCTTAAA--TTGT-AAGG-GG-GAG------------TG----GGTCAACGAGTTTTT---GTCCT--TC-T---C---A-------------TT---TCAGTTCTG--TGATTGC-CAAA-GATC-----GA-GTAAGC-T------TGAAGAT----------------GT---TGTACATA--T----------------TT-----------------T---G-ACAATGGAACAATATTCAGTACTTTT----GTTG-AATAAAGAAATCTAATTATAGATC--GTCGC---CTTTTCA-TTT-TCT---TTGAGC-TGCGGAAAA-TAA-CATTTTCTAG-CCATTTTTACGACAAA-TAAATAATCTTAC--------TTA---ATGC---GTTTATCAT-----A--AGAAAATAATGTAATTTGGGGAC-TTCCAA-G-AATTTC--ATTATGTTCTGTTT--AAA-T--------TT-T-CAATAGAAAAAAACCCTTTAACGTTTT-CATA
gi|12 : taaatcattacaaagacgtatcttacggaacctcttgttccttgaaatctttaaatcaagtgtagtgcaaatttagaattacatgtacttaaggaataaaagaaaaatcataagtaaacgttacaagaaactgaaaatgatttaatctagattttttcaagtttataaactccgtgatattttgtagaaatacatgaaatataaatcacaatatttgaataccttttgtcgtttggtattggtcaacagaaagaagctactcttgtcttagtcagcccgcatttacatttataacagagataaaatattttttgtaattgaaggctataactgaaaacgaagtataatgccagtaataattttcttgccagacaaatatctgctgtatgtacatggttatataccttcaatgaatggttgatcatttattggtgaattgacaaagcagttcgcgtacagtgtactactgttttttcaaagtgagagtgggtggcggcgcgcagtcttacgagaagtgtgatgttaaaattgtccataatactcgacaggcaaaatacaagagaaattgtaatatctaagtaaggctaaacttcaacatcctggacagtgttggaaaggggagggggggggggggggaacaaaaaagccacaaaaaactagaaaatctttatttactcgaacGC-T------CGAAGAT-TTTGT-CAAACAATTGT---TGTACAT----G-------ACTAG-T--T--AA--CGATA-A--TATTTTG-ACAATGGAA-GAT---CAGTACTCTT----GTTG-AATATTAGAA-------ATAAATC--GTCAC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAA--TAA-C--------------TTGTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-CTTCA----TCAT-----A--AAAAAATC--GTATTTTGGGGAT-TTA--AAG-AATTTCAAAT--TGTT-TGTTT--AAA-T--------TT-TTAAA---AAAACGACCCCTTAACGCTTT-CATAG-------------AT----AC--------TA-AC-TCGTTAT-------A--TCGAGATACTTAAGTT--GT--T----AT---AACG--AGATA-ATTAAT-TCGT-TAT--AACGAGATATA--TAAC
gi|13 : ---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAA-TATC-----GA-CTTAGC-T------C-AACAT-TTTGT-GAAACCATCGT---TGCACATACATG-------ATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAAATAA-CATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GTG---AT-C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATGC--A-G-AATTTCTAAT--TGTTATCTTTA-AAA-T--------TT-G-GAG---AGAAC
gi|14 : T---CAGTACTTTT----TTTTTAATAAAAGAA-------ATAGATC--GTCGC---CTTTTCA-TTT-CTT---TGGAGC-TG--GAAAA-TAA-TATTTTCTAG-CCATTTTTACGACGAA-TAAA-TTTCTTAC--------CTA---AT-C---G----TTATCATTAA--AAAAAATCATGTAATTTGGGGAC-TTC--A---AGTTTCAAAT--TGTTCTGTTT--AAA-T--------TT-T-CAAT--AGAAAAACCCTTAAACGTTTT-C------AC-AC------AC----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAA
gi|16 : CGAGATAACTA-------------TA---CCTTGTT---------C-G-AAAG------------------------AGAG-AAC-TCGTTAT-AAAGAGAT-ACT----AGTTAACGCTTTCAAACT---CGTCA-TTTCAC--ATTT--A-AT--ACT-AA--------CTCGTTTC-A--A--CGAGA------C----------TCAAG-CTCATTATAA--CGGGTTA---ATATT-------ATTTGT-T-CTTA---CTTT----T-------TC--A---AAAA--TGAGTCCA-C--CCGGCTTTCGTA
gi|17 : gACGAGATAAA--TAACTCTTTA-----GAATGAGATA-CTA------A------------CTCGTTTTG-AT-----G-AGAT------------------------C-TA-AAC-TCATTAT-AACGAGAT-AAT---------------T--AATT---CATTA------C--G-----AGAT--ATT-AA--------CTGGTTAA-A--A--CGAGAA---AAC----------T--AA-ATCGCTAGAA--CG-TTTA---ATgaaa
gi|18 : --AGATA-GCAAAC-TCGA-TAT--AACGA-AGGTT--TAACT--TTAACTATTAACTTAATA-TTAGAAAATATC----TA---ACTCGT---T-A--A-C-C-AGAT------------------------AACT-AAA-TCGCTAT-AACGATAT-GAT---------------T--AGCC---CATTA-T--AAC--G-----ATAT--AATTAA--------TTCCTTAT-A--A--CGAGAT---AAT----------T--AA-TTCATTATAA--CGcgaagtacttaatgtactgataaccggtactgtttaga
gi|19 : -TGTTT--AAA-T--------TTTG-GAA---AGAACG--CCCCTAACGTTTT-AAAAG-------------AT----AC--------TA-AC-CCGTT-T-------A--TCCAGATAATTAAATT--GTTAT----AT---AACG--AGATA-C-TAAC-TCGT-TATAAAACGAGTTATT--
gi|19 : CGTTTT-AA-AAGAT-ACT----A--------------ACC---CGTT--T--ATC--C-----AGAT--AATTAA--------ATTGTTAT-ATAA--CGAGAT---A-C----------T--AA-CTCGTTATAAAACGAGTTATT-ATTTTTTT--TTTTTATTAT-CAT----TTTT----T-------T--------AA---TGAGCCCA-G--CCGGCTTTCGTAattttttttttttattatcatttttttaatgagcccagccggctttcgtaa
gi|2 : tgtttaaattttggaaagaacgcccctaaACCTTAAA--TTGT-AAGG-GG-GGGGGGGCGGGATGGTGCAGTGGT-AACGA-TCTGT---GTCCT--TC-T---C---AT---TTTA---GGTT--G-CAGT---G--TGATTGCTCAAGCGAGCATGCAGACGTAAGCTT------TGAAGAT-Ta
gi|2 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggTGGAACAATATTCAGTACTTTT----GTTG-AATAAA-GAA-------ATAGATC--ATCGC---C-TTTCA-TTTACTTGTGAGGAGCGTG--GAAAA-TAACCATTTGTGAG-CCATTAGTACGACGAA-GAAA-CTTCAATC--------GTT---AT-C---G------AT-----C--AAAAAATCATG-AATTTAGCGAC-TTC--T-C-TATTTCAAAT--TGTT-TCTTTTAAAA-TATGTTCAATT-A-GAA---A-AAGA--CCTTTAACGTTTC-------TAC--C------AC----AC--------TACACATCGTTATAACCGTAA--ACAAGATAATTAAT----GTA-T----GT---AACGCAGGATA-ATTAACATCGTGTAT--AAC-AGATAAT--TAACTCG-TA-----TTGCGGGA-----A------AT-----TA-----TCAT-GTTCAT-A-TAG-AGACATGATGATAGAGGTGCTGGAAACGAATT-AAT-TC--TATAAACGACACAAAT----A----------T--ACGTG--CGTTA-T--AAC--GAGTATAGAT--AGT-AATACGAGATTTCGTTATCA--AGGCGAGAT---AAT----------C--AATCTCGTTATAA--CGAG-TA---ATTTTTAT--Tacaggtattttgggactggaacaatattcagtacttttgttgaataaagaaatagatcatcgcctttcatttacttgtgaggagcgtggaaaataaccatttgtgagccattagtacgacgaagaaacttcaatcgttatcgatcaaaaaatcatgaatttagcgacttctctatttcaaattgtttcttttaaaatatgttcaattagaaaaagacctttaacgtttctaccacactacacatcgttataaccgtaaacaagataattaatgtatgtaacgcaggataattaacatcgtgtataacagataattaactcgtattgcgggaaattatcatgttcatatagagacatgatgatagaggtgctggaaacgaattaattctataaacgacacaaatatacgtgcgttataacgagtatagatagtaatacgagatttcgttatcaaggcgagataatcaatctcgttataacgagtaatttttatta
gi|21 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggaccttaaattgtaagggggggggggcgggatggtgcagtggtaacgatctgtgtccttctcattttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggacC-TCGTTAT-AACG-GAT-A------A----------T--AACT---CGTTAAT--AACCCG-----AGATTAAGT-AA--------CTAGTTAT-AT-AT-CGA-AT---A-C----------T--AA-CTCGTTA-AA--CGAGTTA---ATTTTTTG--TAAATTTT-T------------------------TC--A---AAAAAATGAGCTCA-G--CAGGCTTTCGTAa
gi|22 : ATTTGAAATTTTAAA--TTGT-AAGG-GG-AAG------------TG----GGT-AACGAGTTTTT---GTCCT--TC-T---C---Agttacatgtatgt
gi|23 : gtaaggctaaacttcaacatcctggaaaagtgtggaagggggggggggagagaacacgtaaactagacatctttactcaa----A----------T--AACTACCTGTAA-T--AAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGAT---GAA----------T--AA-CTGTTTAT--------TTA---TTTATTTT--TTATTTTT-T-TTT----TTTT----TGTATTCTTC--A---AAA---TGAGCCCA-T--CTAGCTTCCt
gi|24 : ttc----A----------T--AACTACCTGTAA-T--AAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGAT---GAA----------T--AA-CT-GTT-TA-------TTT---ATTTATTT--TTATTTTT-T-TTT----TTTTATTCT-------TC--A---AAA---TGAGCCCA-T--CTAGCTTCCta
gi|25 : ttcGAAATCTTAAA--TTGT-AAGG-G------------------G----GGT-AACGAGTTTTT---GTCAT--TC-T---C---Ata
gi|26 : aaggctaaacaacagtgtgtggaaaggggggggggggcacaaaaacctagaaatctttactcgaactctTTCGAGATCTTAAA--TCAT-GAGG-GG-GAG------------GG----ACT-AACAAGACTTC---ATCCT--TC-TCTAC---ACGGGTCCA---ATTC--ATTAtt
gi|27 : ggcacaaaacataaattataagacgttttcactcaaatTTA-T--AAC--G-----ATAT--ATT-AA--------TTCCTTAG-A--C--CGAAAT---AATAAGCTCGCTTT--AA-CTCGTTATAA--CGAGCTG---ATTTTT---------------C------TCTC----T-------TC--AAATAAA---TAAGCCAA-AGTCCGGCCTTCGT
gi|28 : -------A--ATGAGTTAGC-AGTTC--GT--T----AA---AATG--AGATA-C-TAAC-TCGT-TTT--AACGAGAC-TC--TATGTCGCAA-----TAACGAAATA------------------------TTGTTATT-AT-G-C-G-ACAT------------------------t
gi|29 : TCGTT-AT-AAC-G-AAAT------------------------AATG-CAC-TTGTTAT-AACGAGAC-AAT---------------T--AAAT---CGTTA-T--ATC--T-----CGATA-ATT-AA--------CTCTTTAC-A--A--CGAGAG---AAC----------T--AA-CCCGTTATAA--CGAtttttgactgaaatgtgaga
gi|3 : TTTGAAATCTTAAA--T----GAAG-GG-GAG------------TG----GGT-AACGAGTTTTT---G-CCT--TC-T---C----------------ATT---TT-GTTC-AGTTGATTGCTCAAA-GATC-----GA-GTAAGC-T------TGAAGATGTTTGA-CAaata
gi|32 : tcattacaaagacgtatcttacggaaccgttataggaccatctcttgttcctgaaatctttaaatcaagtgtagcagtttagaattacatgtactttagaaataaaagaaaaatgataagtaacgttacaatatactgaaaatgtattaatatagatttttccaagtttataaactcgatttttgtagaaatacatgtaaaataaatcaccacagtacattactttacagatgtttgtaagtttatatttaactcatctacatatataattatttgaatcaaatctgctcttgtcgtaatcagcccgcatttacatttataaatagatacatattttttgtaattgaaggcataaactgaaaatgaagtacatgcagtaataattttcttttccagacaaatatctgttgaatggttgatcatatattggtgaattgacattgtacggtcgcgtacatgtactactgtttttcaaagtgaggtgggtggggggtgcagtcttatgaaaagttgagtttacaattgtccataatactcgacaggacaggcaaaatataagagaaatttttatctaactaaggctaaacttcaacatcctggaaagtgtgggggcaaagagcacaaaacactcgagatctttactcgaacT-AA--------CTCGTTAT-A--A--CGAGAT---AAT----------T--AT-CCCGTTATAA--CGAGTT-----TTTTTTT--TTGTTTTT----TT----TTCC----T-------CCA-A---AAA---TGAGCCAA-G--CCGGCTTTCGTAtatgttttgacaatggaacaattttcgttttaaattttcaatataaaa
gi|33 : C--------TA-TC-TCGTTAT-------ATTGCGAG-TAATTAATTC--AG--T----AA---AACG--AAATATATTACT-TCAT-TAT--ACCAATATAAT--TCTTTCCTTA-----TAATGAGGTA-
gi|34 : --------CTCGTTAT-A--A--CGAGAT---AAC----------T--AG-CTTGTTATAA--CGAGTTA---ATTTTTTT--TTAATTTT-T-C-----------------------CA-A---AAA---TGAGCCCA-G--CTGGCTTTCGTAa
gi|35 : atAGATAGT---ATCTCGTTA-----AATCGAGATT-ATA------AT-----TACTAGCTCGTCATT-AT-A-A-GGAGAT------------------------A--T-GATGTCGTTAT-AACGAGAT-GTT----A----------aaa
gi|36 : AAATCTTAAA--TTGT-AAGGTGGTGGG------------TG----GG--GGCTGGTA--C---GTCCTACCC-TG--C---ATGGGTTCA---AATC--ACCAGTTgtga
gi|37 : aA--------CTTGTTGC-A--A--CGAGAT---A-C----------T--AA-CTCGTTATAA--TGAGTTA---A----------------T-T-CTT----TCTT----C-------CA--A---AAA---TGAGCCCA-G--CCGGCTTTCGTAtaaaattgc
gi|39 : GTTATAA--CGTGTTA---ACTTTTTTTGTTATTTTT-TGCTT----TTTT----T-------TC-------AA---TGAGCCCATG--CGGGCTTTCGTc
gi|4 : ATTTAAGATTTTAAAAATCGTTAAGT-GG-AAA------------GG----GGT-AATGAGCGTAT---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAA-TATC-----GA-CTTAGC-T------C-AACAT-TTTGT-GAAACCATCGT---TGCACATACATG-------ATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAA-TAA-CATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GT----AT-C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATGC--A-G-AATTTCTAAT--TGTTATCTTT--AAA-A--------TT-G-GAG---AGAACACACCTTTAACGTCTTACATAATTAC-ACTTTGGTATAATAAC--------TA-AC-TC-TTAT-------A--ACGAGGCAATTAATTTCAGT--T----CT---AACG--AGATA-CTTAGA-TCGT-TAT--AACGAGATTTT--TAAGTCG--A-----TAACGAGATG-CTAC-----ATG----TA---ATTTGTTGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGATA--AACGAGGT-ACTGCAAG----------T--AACT---CGTTA-T--AAT--G-----AGAT--ACT-AA--------CTCGTTGT-A--A--CGAGAT---AAC----------C--AA-ATAGTTATAA--CGTGTTA---ACTTTTTTTGTTATTTTT-TGCTT----TTTT----T-------TC-------AA---TGAGCCCATG--CGGGCTTTCGTA
gi|40 : gtAACGTTTT-CATA----C-AC------CT--------------TA-AC-TCGTTAT-------A--ACAAGGTAAGCAATTC--GT--T----AT---AACG--AGATA-TT
gi|42 : TT--TT-TTTTT-T-ATT----TTTC----T-------CC--A---AAAA--TGAGCCCA-G--CCGGCTTTCGTA
gi|43 : a-AA--------ATCGTTGT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--caca
gi|43 : -------A--ACAAAAAAA--AAATC--GT--T----GT---AACG--AGATA-ACTAAC-TCGT-TAT--AAtttttttgtttttt
gi|45 : TT-T-TTT----ATTT----T-------TCCAA---AAA---TTAGCCCA-G--CCGGCTTTCGTAtttt
gi|46 : T-T-TTT----TTTC----T-------TCCAA---AAA---TGAGCCCA-G--TCGGCTTTCGTAcaca
gi|47 : --A---AAA---TGAGCCCA-G--CCGGCTTTga
gi|48 : cca-T-TTT----TTTT----T-------TC--A---AAAA--TGAGCTCA-G--CCGGCTTTCtaattcgtaagtatact
gi|49 : T----TTTT----T-------TC--A---AAAA--TGAGCTCA-G--ACGGCTTTCGTct
gi|5 : ACTTGAAATCTTAA---TTGT-AAGG-GG-GAA-------------G----GGT-A-CGAGTTTTTATTGTCCT--TC-T---C---A-------------TT---TTAGTGC-AGTTGATTGCTCAA--GATC-----GA--TAAGT-T-------GAAGAG-CT-GTACATACT-TTGAAAATGTACA-A--TA---------TAG-TATTTTGAA-TGA--------------ATGATG------T---C-GTTCATTT----TTTG-GA---GCGGATACT---ATATTTCTAGTCACACTTTTTTCAATTT-TTT---TGGTGC--G--GAAAA-TAA-TAATTTTTAGGCCATTTTTACGACGAAAGAAA-AATCTTACCGCTTAAAATG---AT-----A----TCAT-----A--AAAAATTCA-GTAATTTGGGGAC-TCA--A-G-AATTTTTAAA--TTCC-TGTTA--AAA-T--------TT-T-GAA---AGAA-AACCA--TAAC--TTT-CA----TAC-AC-------------T--------TA-AC-TCGTTAT-------A-----AGATAATTAATTC--GT--TCAGCATATAAACG--AGATA-A-TAAC-T-GT-TAT--AAAGAGATAC---TAAC----TG-----TAATAAGATA-C---------------GA---ACACG----T-ATAA-C-G--GA-------------------------AATT-AAC-TCG-TAT-AA
gi|50 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacga--A---AAA---TGAGCCCA-G--CCGGCTTTCCTAacagtaattttttttttcaaaaatg
gi|51 : ttccaTT----TTTT----T-------TCG-A---AAA---TGAGCTCA-G--CCGGCTTTCaga
gi|7 : TTCGAAGTCTTCAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTGTTT---GTCCT--TC-T---C---A--------------T--ATTAGTTC-AATTGATTGCTCAAA-GATC-----GA-ATAAGC-T------TGAAGAT-TTTGT-CAAACCATTGT---TGTACATA--T----------------TT-----------------T---G-ACAATGGAA-CAT---CAGTACTTTT----GTTG----------A-------ATAA---------C---CTTTTCA-T-------------------------------ATTT-CTTG-CCATTTTTACGACGAA-TGAA-TTTCTTAC--------GTATTGGT-T---A----TCAT-----A--AAAAAATCATGCAATTTGGGGGT-TTT--A--------------------TGTTT--AAATT--------TT-A-GAA---AGAACAACCCCTTAACGTTTT-CATAG-------------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAACTC--GT--T----AT---ACCG--AGATA-C-TAAC-CCGT-TAT--AACGAGTTAAT--T
gi|7 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacAGAT-ACT----A--------------ACT---CGTTA-T--AAC--G-----AGAT--AATTAA--------CTCGTTAT-A--C--CGAGAT---A-C----------T--AA-CCCGTTATAA--CGAGTTA---ATTTTTT-----AATTTT-T-TTT----TTTT----T-------CA--A---AAA---TGAGCCCA-G--CCGGCTTTCGTAttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|8 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatTTCAAAATCTTAAA--TCGT-AAGG-GT-GAG------------TA----GGT-GACGAGTGTTC---GTCCT--TC-T---CTCCACGGGTCCA---ATAT--ATCAGTTC-AACTGATTGCCCAAA-TATC-----GA-TGTAAC-TTGAAATCGAAGAT-ATTGT-CCAACAGGTGT---TGTATATA--TGTAAATTGACTAGATATC--AAA-C--CATA-ATTT---G-ACAATG-------------TATTTTT----GTTG-AATAAAAGAA-------A-ATATC--GCTAC---CTTTTCA-TTT-GTT---AGGAGC-TA--GAAAA-TAA-CATTTTCTTG-TTATATTTATGACGAC-TAGA-ATTCTTAC--------GTA---AT-C---G----TCATC----ATCAAAAAATTATGTAACTAGGGGAT-TTA--A-ATAATTTCTAAG--AGTT-TTGTG--AAA-T--------TT-G-AAA---AGAACAACCCCTTAATGTTTT-CATAG--AT-AC------AA----GC--------TA-AC-TAGTTAT-------A--ACGAGATAATT-----------------T---ACCG--AGATA-C-TGAC-TCGT-TTT--AAAGAGATATTAAAAATTCCTTA-----TAACGATAT
gi|9 : aaacAACGTTTT-CATAG-TACTGC------GTTATAACGAGTTCTTTA-TC-TCGTTCT-------A--ACGAGATACTT----C------------T---AACG--AAATA-ACTAAC-TCGT-TAT--AACGAGGTAGA--TAACTTGTTA-----TAATGAAATT-CTA------GTAATTTTA---AAT--TCGTT-GT-A-A-C-AAAT------------------------TATTCAAT-TCGTTAT-AATTATAT-AAT---------------T--AACT---C--TA-T--AAC--G-----AGAT--AATTAA--------CTTGTTAT-A--A--CGAGATGTTAAC----------T-----CTCGTTATAC--CTAGTTAGATATTTTTTT--TT-TTTAT-A-CTTAGGCCTCT----T-------TC--A---AAAA--CGAGCCCA-G--CCAACTTTCGCA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAATAATTACAATGCTATTACGGACGTTAAGGACCTCTTGATCTGAAATTGTTAAATCAGTGTAGCAGTTAAACTACATGTTAAGAATAAAAGAAACTATAATCAAGAAACGAAAATATATTTATCTAGTTTTTCCAAGTTACTAAATCCGTGATTATTTTTTGTAGAAATACAGTATAACCATGTGAATAAATCATCAGTACAACTTTGCAGTTTTTGAGTTATATATATAATCATTAATGTATATATTTGAAGACATTTTGTCGGTATTGTCAACGAAAGAAACAAAAGCGCTCTTCATATCGCCCGCATTTAATTATTCTTATAAAAGAGTTTTTTGTAATTGAAGGTTAAACTGAAAAGAAGTACATGGCAATAATAATTTCTTTGCCAACAATATGCTGTTAATGTATTACTTCATGAATGTTGATCATTTATGGGGTGAATGACAAGATCATTCGCGTAAGCGCTAGTTTCCAACAGTGAGGTGTGGGCGCAGTCTTATGAGATAAGTTTACAATTCTAGTATCGACAGGCAAAAACAAAG
Unaligned ( gi|10 ): AAATCAATACAAAGATGTATCTTACGGAACCGTTATAGGACGTTCTCTTGTTCCTGAAACCTTTAAATCAAGTGTAGCAATTGTAGAATTACATGTACTTACTGAAAATGTTTTAATCTATATTTTTACAAGTTTATAAACTTCATAATTATTTTGTGAAAATACATATAAACCTTGAAAAATAAATCATCACAGTACATTACTTTGCAGATGTTTGTGAGTTTATATACAACTCACCTACATGTATAATATTTGAATGTCTTTTGTCGTGGTATTGGCCAACAGAAAGAAATCAAATCTGCTCTTGTCTTGGTCAGCCCGCATTTACATTTATAACAGAGATACTTTTTTGTAAATAAAGGCATAAACTGAA
Unaligned ( gi|11 ): TATACTATTTGAAGACCTTTTGTCGTGGTATTGGTCAACAGAAAGAAATCAAAGCTGCTCTTTTCATAGTCAGCCCCGCATTTACATTATTTTATAACAGAGATTTTTTTGTAATTGAAGGCTTAAACTGAAAACGAAGTACATGCAATAATAATTTTCTTTGCCAGACAAATACCTGCTGTTACATGGTATATACCTTCATGAATGGTTGATCATTTATTGGGGTGAATTGACAAAGCATTCGCGTACATGCGCTACTGTTTTCCAAAGTGAGGTGGGTGGGGGCGCAGTCTTATGAGAAGTTGAGTTTACAATTGTCCTTAGTACTCGACAGGCAAAATACAAGAGAAATGT
Unaligned ( gi|15 ): TCAATTACATAACAGACGTAATCACAGGACACCGTTATAGCCATCTCTGTCCTGAAAAATCTTTAATACAAGGTGCAGTTTATAATACATGACTATTTACGAAAATAAAAGGAGAAATCATTAAGTAACGCTTACAAAAAACTGAAAATGTGTTTAAATTGAATATCTTGCAAGTTATAACTCGTGATTATTTTGTAAAT
Unaligned ( gi|20 ): TAAATCATTACAAATACGTATCTTACGGAACTGTTATAGGACCATCTCTTGTTCCTGAAATCTTTAAATCAAGTGTAGCAGTTTAGAATTACATGTACTTTAGAAATAAAAGAAAAATCATAAGTAACGTTACAATAAACTGAAAATGTTTTAATCTAGAT
Unaligned ( gi|30 ): TACAATGTCATTTTTTTTTTATCAGACAGCTATTTTTCTACTACATGGTATATCTTCACGAATGATTGTCATTAATTGATGAATTGACGTCAAGG
Unaligned ( gi|31 ): ATGTAAAATAAATCACCGACAGTACACTTGATTACGATGTTTGTAAGTTTATATTTAACTCATTCTACAGACATAGTATAATATTTGAATACC
Unaligned ( gi|38 ): AAACATCATACTCAAGTTTGAAATTATTCAATTTAAGGGGAGATGCATAACTGATGCTTCTGCCCTTTCATT
Unaligned ( gi|41 ): CAACTCATCTACATGTATAATACTTAAATATATGTTGTCGTGGTAAAAAAAAAAAAAACAA
Unaligned ( gi|44 ): ACTTCAACATCCTGGAAAGTGTGGGGGCAAATAGCACCAAAAAAACC
Unaligned ( gi|52 ): AATATTTTTAACATAGACACATTTCTATATTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 2222222222222 66666666666666666666666666 1111 11111 22222222 111 33333333333333333333333333333333333333333333 1111111 1111 2222222 1111 11111111 1111 1111111111 22222222 1111111 1 11111111 111 666666666666666666666666666666 1111111 111111111111 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888888888 333333333333333333 111 11111111 1 111111111111 111111 111
lowQualScore : 55 3 3 3 3 0000000000000 7777 3 1 7777 44 6 22222222222222222222222222 2222 5 22222 55555555 4 33 55 0 5 7777 000 88888888888888888888888888888888888888888888 2 8888888 8888 4 6 3333333 1 66 1 777 4 4 0000 77777 4 4 1 555 4 4 66666666 0000 4444444444 00000000 8 4444444 6 66 6 99 4 44444444 7777 111 2 4 2 3 2 333333333333333333333333333333 3 3 0000000 44 2 44 000000000000 44 777 3 3 44 7777 77 00000 5555555555555555555555555555555555555555555555555555555555555555555555555555 4 1 3 3 4 111111111111111111 555 3 44 44444444 77 1 0 88888888 2 88888 444 000000000000 33 2 33 1 888 999999 2 66666666 4444 6666666 111111 222 3 22
lowQualScore : .. . . . . ............. .... . . .... .. . .......................... .... . ..... ........ . .. .. . . .... ... ............................................ . ....... .... . . ....... . .. . ... . . .... ..... . . . ... . . ........ .... .......... ........ . ....... . .. . .. . ........ .... ... . . . . . .............................. . . ....... .. . .. ............ .. ... . . .. .... .. ..... ............................................................................ . . . . . .................. ... . .. ........ .. . . ........ . ..... ... ............ .. . .. . ... ...... . ........ .... ....... ...... ... . ..
lowQualScore : 00 3 6 6 6 6666666666666 7777 6 0 5555 66 7 66666666666666666666666666 0000 0 55555 22222222 4 88 44 1 0 1111 000 44444444444444444444444444444444444444444444 5 1111111 9999 4 9 9999999 0 11 7 888 4 4 1111 88888 4 4 8 333 4 4 11111111 4444 3333333333 77777777 9 7777777 9 11 0 55 0 55555555 2222 000 5 6 7 6 2 333333333333333333333333333333 6 6 0000000 22 6 66 777777777777 22 444 3 3 66 2222 22 00000 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 6 6 5 000000000000000000 000 1 22 88888888 33 0 7 55555555 4 11111 111 999999999999 22 4 11 2 333 555555 4 88888888 5555 8888888 111111 999 8 66
consensus : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAGTTC-GATTGATTGCTCAAA-GATC-----GA-N------TAAGC-TCGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TTN-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-TAC-AC------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------AT-----TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--CGAGTTA---ATTTTTTT--TTATTTTT-T-CTT----TTTT----T-------TC--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
Reference ( family-375 ) : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAGTTC-GATTGATTGCTCAAA-GATC-----GA-N------TAAGC-TCGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TTN-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-TAC-AC------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------AT-----TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--CGAGTTA---ATTTTTTT--TTATTTTT-T-CTT----TTTT----T-------TC--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|1 : TTTGAAATCTTAAA--TTGT-AAGG-GG-GAG------------TG----GGTCAACGAGTTTTT---GTCCT--TC-T---C---A-------------TT---TCAGTTCTG--TGATTGC-CAAA-GATC-----GA-G------TAAGC-TTGAAGAT----------------GT---TGTACATA--T----------------TT-----------------T---G-ACAATGGAACAATATTCAGTACTTTT----GTTG-AATAAAGAAATCTAATTATAGATC--GTCGC---CTTTTCA-TTT-TCT---TTGAGC-TGCGGAAAA-TAA-CATTTTCTAG-CCATTTTTACGACAAA-TAAATAATCTTAC--------TTA---ATGC---GTTTATCAT-----A--AGAAAATAATGTAATTTGGGGAC-TTCCAA-G-AATTTC--ATTATGTTCTGTTT--AAA-T--------TTT-C-AATAGAAAAAAACCCTTTAACGTTTT-CATA
gi|12 : taaatcattacaaagacgtatcttacggaacctcttgttccttgaaatctttaaatcaagtgtagtgcaaatttagaattacatgtacttaaggaataaaagaaaaatcataagtaaacgttacaagaaactgaaaatgatttaatctagattttttcaagtttataaactccgtgatattttgtagaaatacatgaaatataaatcacaatatttgaataccttttgtcgtttggtattggtcaacagaaagaagctactcttgtcttagtcagcccgcatttacatttataacagagataaaatattttttgtaattgaaggctataactgaaaacgaagtataatgccagtaataattttcttgccagacaaatatctgctgtatgtacatggttatataccttcaatgaatggttgatcatttattggtgaattgacaaagcagttcgcgtacagtgtactactgttttttcaaagtgagagtgggtggcggcgcgcagtcttacgagaagtgtgatgttaaaattgtccataatactcgacaggcaaaatacaagagaaattgtaatatctaagtaaggctaaacttcaacatcctggacagtgttggaaaggggagggggggggggggggaacaaaaaagccacaaaaaactagaaaatctttatttactcgaacGC-TCGAAGAT-TTTGT-CAAACAATTGT---TGTACAT----G-------ACTAG-T--T--AA--CGATA-A--TATTTTG-ACAATGGAA-GAT---CAGTACTCTT----GTTG-AATATTAGAA-------ATAAATC--GTCAC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAA--TAA-C--------------TTGTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-CTTCA----TCAT-----A--AAAAAATC--GTATTTTGGGGAT-TTA--AAG-AATTTCAAAT--TGTT-TGTTT--AAA-T--------TTTTA-AA---AAAACGACCCCTTAACGCTTT-CATAG-------------AT----AC--------TA-AC-TCGTTAT-------A--TCGAGATACTTAAGTT--GT--T----AT---AACG--AGATA-ATTAAT-TCGT-TAT--AACGAGATATA--TAAC
gi|13 : ---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAA-TATC-----GA-C------TTAGC-TC-AACAT-TTTGT-GAAACCATCGT---TGCACATACATG-------ATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAAATAA-CATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GTG---AT-C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATGC--A-G-AATTTCTAAT--TGTTATCTTTA-AAA-T--------TTG-G-AG---AGAAC
gi|14 : T---CAGTACTTTT----TTTTTAATAAAAGAA-------ATAGATC--GTCGC---CTTTTCA-TTT-CTT---TGGAGC-TG--GAAAA-TAA-TATTTTCTAG-CCATTTTTACGACGAA-TAAA-TTTCTTAC--------CTA---AT-C---G----TTATCATTAA--AAAAAATCATGTAATTTGGGGAC-TTC--A---AGTTTCAAAT--TGTTCTGTTT--AAA-T--------TTT-C-AAT--AGAAAAACCCTTAAACGTTTT-C------AC-AC------AC----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAA
gi|16 : CGAGATAACTA-------------TA---CCTTGTT---------C-G-AAAG------------------------AGAG-AAC-TCGTTAT-AAAGAGAT-ACT----AGTTAACGCTTTCAAACT---CGTCA-TTTCAC--ATTT--A-AT--ACT-AA--------CTCGTTTC-A--A--CGAGA------C----------TCAAG-CTCATTATAA--CGGGTTA---ATATT-------ATTTGT-T-CTTA---CTTT----T-------TC--A---AAAA--TGAGTCCA-C--CCGGCTTTCGTA
gi|17 : gACGAGATAAA--TAACTCTTTA-----GAATGAGATA-CTA------A------------CTCGTTTTG-AT-----G-AGAT------------------------C-TA-AAC-TCATTAT-AACGAGAT-AAT---------------T--AATT---CATTA------C--G-----AGAT--ATT-AA--------CTGGTTAA-A--A--CGAGAA---AAC----------T--AA-ATCGCTAGAA--CG-TTTA---ATgaaa
gi|18 : --AGATA-GCAAAC-TCGA-TAT--AACGA-AGGTT--TAACT--TTAACTATTAACTTAATA-TTAGAAAATATC----TA---ACTCGT---T-A--A-C-C-AGAT------------------------AACT-AAA-TCGCTAT-AACGATAT-GAT---------------T--AGCC---CATTA-T--AAC--G-----ATAT--AATTAA--------TTCCTTAT-A--A--CGAGAT---AAT----------T--AA-TTCATTATAA--CGcgaagtacttaatgtactgataaccggtactgtttaga
gi|19 : -TGTTT--AAA-T--------TTT-GGAA---AGAACG--CCCCTAACGTTTT-AAAAG-------------AT----AC--------TA-AC-CCGTT-T-------A--TCCAGATAATTAAATT--GTTAT----AT---AACG--AGATA-C-TAAC-TCGT-TATAAAACGAGTTATT--
gi|19 : CGTTTT-AA-AAGAT-ACT----A--------------ACC---CGTT--T--ATC--C-----AGAT--AATTAA--------ATTGTTAT-ATAA--CGAGAT---A-C----------T--AA-CTCGTTATAAAACGAGTTATT-ATTTTTTT--TTTTTATTAT-CAT----TTTT----T-------T--------AA---TGAGCCCA-G--CCGGCTTTCGTAattttttttttttattatcatttttttaatgagcccagccggctttcgtaa
gi|2 : tgtttaaattttggaaagaacgcccctaaACCTTAAA--TTGT-AAGG-GG-GGGGGGGCGGGATGGTGCAGTGGT-AACGA-TCTGT---GTCCT--TC-T---C---AT---TTTA---GGTT--G-CAGT---G--TGATTGCTCAAGCGAGCATGCAGACG------TAAGCTTTGAAGAT-Ta
gi|2 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggTGGAACAATATTCAGTACTTTT----GTTG-AATAAA-GAA-------ATAGATC--ATCGC---C-TTTCA-TTTACTTGTGAGGAGCGTG--GAAAA-TAACCATTTGTGAG-CCATTAGTACGACGAA-GAAA-CTTCAATC--------GTT---AT-C---G------AT-----C--AAAAAATCATG-AATTTAGCGAC-TTC--T-C-TATTTCAAAT--TGTT-TCTTTTAAAA-TATGTTCAATTA-G-AA---A-AAGA--CCTTTAACGTTTC-------TAC--C------AC----AC--------TACACATCGTTATAACCGTAA--ACAAGATAATTAAT----GTA-T----GT---AACGCAGGATA-ATTAACATCGTGTAT--AAC-AGATAAT--TAACTCG-TA-----TTGCGGGA-----A------AT-----TA-----TCAT-GTTCAT-A-TAG-AGACATGATGATAGAGGTGCTGGAAACGAATT-AAT-TC--TATAAACGACACAAAT----A----------T--ACGTG--CGTTA-T--AAC--GAGTATAGAT--AGT-AATACGAGATTTCGTTATCA--AGGCGAGAT---AAT----------C--AATCTCGTTATAA--CGAG-TA---ATTTTTAT--Tacaggtattttgggactggaacaatattcagtacttttgttgaataaagaaatagatcatcgcctttcatttacttgtgaggagcgtggaaaataaccatttgtgagccattagtacgacgaagaaacttcaatcgttatcgatcaaaaaatcatgaatttagcgacttctctatttcaaattgtttcttttaaaatatgttcaattagaaaaagacctttaacgtttctaccacactacacatcgttataaccgtaaacaagataattaatgtatgtaacgcaggataattaacatcgtgtataacagataattaactcgtattgcgggaaattatcatgttcatatagagacatgatgatagaggtgctggaaacgaattaattctataaacgacacaaatatacgtgcgttataacgagtatagatagtaatacgagatttcgttatcaaggcgagataatcaatctcgttataacgagtaatttttatta
gi|21 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggaccttaaattgtaagggggggggggcgggatggtgcagtggtaacgatctgtgtccttctcattttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggacC-TCGTTAT-AACG-GAT-A------A----------T--AACT---CGTTAAT--AACCCG-----AGATTAAGT-AA--------CTAGTTAT-AT-AT-CGA-AT---A-C----------T--AA-CTCGTTA-AA--CGAGTTA---ATTTTTTG--TAAATTTT-T------------------------TC--A---AAAAAATGAGCTCA-G--CAGGCTTTCGTAa
gi|22 : ATTTGAAATTTTAAA--TTGT-AAGG-GG-AAG------------TG----GGT-AACGAGTTTTT---GTCCT--TC-T---C---Agttacatgtatgt
gi|23 : gtaaggctaaacttcaacatcctggaaaagtgtggaagggggggggggagagaacacgtaaactagacatctttactcaa----A----------T--AACTACCTGTAA-T--AAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGAT---GAA----------T--AA-CTGTTTAT--------TTA---TTTATTTT--TTATTTTT-T-TTT----TTTT----TGTATTCTTC--A---AAA---TGAGCCCA-T--CTAGCTTCCt
gi|24 : ttc----A----------T--AACTACCTGTAA-T--AAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGAT---GAA----------T--AA-CT-GTT-TA-------TTT---ATTTATTT--TTATTTTT-T-TTT----TTTTATTCT-------TC--A---AAA---TGAGCCCA-T--CTAGCTTCCta
gi|25 : ttcGAAATCTTAAA--TTGT-AAGG-G------------------G----GGT-AACGAGTTTTT---GTCAT--TC-T---C---Ata
gi|26 : aaggctaaacaacagtgtgtggaaaggggggggggggcacaaaaacctagaaatctttactcgaactctTTCGAGATCTTAAA--TCAT-GAGG-GG-GAG------------GG----ACT-AACAAGACTTC---ATCCT--TC-TCTAC---ACGGGTCCA---ATTC--ATTAtt
gi|27 : ggcacaaaacataaattataagacgttttcactcaaatTTA-T--AAC--G-----ATAT--ATT-AA--------TTCCTTAG-A--C--CGAAAT---AATAAGCTCGCTTT--AA-CTCGTTATAA--CGAGCTG---ATTTTT---------------C------TCTC----T-------TC--AAATAAA---TAAGCCAA-AGTCCGGCCTTCGT
gi|28 : -------A--ATGAGTTAGC-AGTTC--GT--T----AA---AATG--AGATA-C-TAAC-TCGT-TTT--AACGAGAC-TC--TATGTCGCAA-----TAACGAAATA------------------------TTGTTATT-AT-G-C-G-ACAT------------------------t
gi|29 : TCGTT-AT-AAC-G-AAAT------------------------AATG-CAC-TTGTTAT-AACGAGAC-AAT---------------T--AAAT---CGTTA-T--ATC--T-----CGATA-ATT-AA--------CTCTTTAC-A--A--CGAGAG---AAC----------T--AA-CCCGTTATAA--CGAtttttgactgaaatgtgaga
gi|3 : TTTGAAATCTTAAA--T----GAAG-GG-GAG------------TG----GGT-AACGAGTTTTT---G-CCT--TC-T---C----------------ATT---TT-GTTC-AGTTGATTGCTCAAA-GATC-----GA-G------TAAGC-TTGAAGATGTTTGA-CAaata
gi|32 : tcattacaaagacgtatcttacggaaccgttataggaccatctcttgttcctgaaatctttaaatcaagtgtagcagtttagaattacatgtactttagaaataaaagaaaaatgataagtaacgttacaatatactgaaaatgtattaatatagatttttccaagtttataaactcgatttttgtagaaatacatgtaaaataaatcaccacagtacattactttacagatgtttgtaagtttatatttaactcatctacatatataattatttgaatcaaatctgctcttgtcgtaatcagcccgcatttacatttataaatagatacatattttttgtaattgaaggcataaactgaaaatgaagtacatgcagtaataattttcttttccagacaaatatctgttgaatggttgatcatatattggtgaattgacattgtacggtcgcgtacatgtactactgtttttcaaagtgaggtgggtggggggtgcagtcttatgaaaagttgagtttacaattgtccataatactcgacaggacaggcaaaatataagagaaatttttatctaactaaggctaaacttcaacatcctggaaagtgtgggggcaaagagcacaaaacactcgagatctttactcgaacT-AA--------CTCGTTAT-A--A--CGAGAT---AAT----------T--AT-CCCGTTATAA--CGAGTT-----TTTTTTT--TTGTTTTT----TT----TTCC----T-------CCA-A---AAA---TGAGCCAA-G--CCGGCTTTCGTAtatgttttgacaatggaacaattttcgttttaaattttcaatataaaa
gi|33 : C--------TA-TC-TCGTTAT-------ATTGCGAG-TAATTAATTC--AG--T----AA---AACG--AAATATATTACT-TCAT-TAT--ACCAATATAAT--TCTTTCCTTA-----TAATGAGGTA-
gi|34 : --------CTCGTTAT-A--A--CGAGAT---AAC----------T--AG-CTTGTTATAA--CGAGTTA---ATTTTTTT--TTAATTTT-T-C-----------------------CA-A---AAA---TGAGCCCA-G--CTGGCTTTCGTAa
gi|35 : atAGATAGT---ATCTCGTTA-----AATCGAGATT-ATA------AT-----TACTAGCTCGTCATT-AT-A-A-GGAGAT------------------------A--T-GATGTCGTTAT-AACGAGAT-GTT----A----------aaa
gi|36 : AAATCTTAAA--TTGT-AAGGTGGTGGG------------TG----GG--GGCTGGTA--C---GTCCTACCC-TG--C---ATGGGTTCA---AATC--ACCAGTTT-AA--AATTGCgtga
gi|37 : aA--------CTTGTTGC-A--A--CGAGAT---A-C----------T--AA-CTCGTTATAA--TGAGTTA---A----------------T-T-CTT----TCTT----C-------CA--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|39 : GTTATAA--CGTGTTA---ACTTTTTTTGTTATTTTT-TGCTT----TTTT----T-------TC-------AA---TGAGCCCATG--CGGGCTTTCGTc
gi|4 : ATTTAAGATTTTAAAAATCGTTAAGT-GG-AAA------------GG----GGT-AATGAGCGTAT---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAA-TATC-----GA-C------TTAGC-TC-AACAT-TTTGT-GAAACCATCGT---TGCACATACATG-------ATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAA-TAA-CATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GT----AT-C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATGC--A-G-AATTTCTAAT--TGTTATCTTT--AAA-A--------TTG-G-AG---AGAACACACCTTTAACGTCTTACATAATTAC-ACTTTGGTATAATAAC--------TA-AC-TC-TTAT-------A--ACGAGGCAATTAATTTCAGT--T----CT---AACG--AGATA-CTTAGA-TCGT-TAT--AACGAGATTTT--TAAGTCG--A-----TAACGAGATG-CTAC-----ATG----TA---ATTTGTTGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGATA--AACGAGGT-ACTGCAAG----------T--AACT---CGTTA-T--AAT--G-----AGAT--ACT-AA--------CTCGTTGT-A--A--CGAGAT---AAC----------C--AA-ATAGTTATAA--CGTGTTA---ACTTTTTTTGTTATTTTT-TGCTT----TTTT----T-------TC-------AA---TGAGCCCATG--CGGGCTTTCGTA
gi|40 : gtAACGTTTT-CATA----C-AC------CT--------------TA-AC-TCGTTAT-------A--ACAAGGTAAGCAATTC--GT--T----AT---AACG--AGATA-TT
gi|42 : TT--TT-TTTTT-T-ATT----TTTC----T-------CC--A---AAAA--TGAGCCCA-G--CCGGCTTTCGTA
gi|43 : a-AA--------ATCGTTGT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--caca
gi|43 : -------A--ACAAAAAAA--AAATC--GT--T----GT---AACG--AGATA-ACTAAC-TCGT-TAT--AAtttttttgtttttt
gi|45 : TT-T-TTT----ATTT----T-------TCCAA---AAA---TTAGCCCA-G--CCGGCTTTCGTAtttt
gi|46 : T-T-TTT----TTTC----T-------TCCAA---AAA---TGAGCCCA-G--TCGGCTTTCGTAcaca
gi|47 : --A---AAA---TGAGCCCA-G--CCGGCTTTga
gi|48 : cca-T-TTT----TTTT----T-------TC--A---AAAA--TGAGCTCA-G--CCGGCTTTCtaattcgtaagtatact
gi|49 : T----TTTT----T-------TC--A---AAAA--TGAGCTCA-G--ACGGCTTTCGTct
gi|5 : ACTTGAAATCTTAA---TTGT-AAGG-GG-GAA-------------G----GGT-A-CGAGTTTTTATTGTCCT--TC-T---C---A-------------TT---TTAGTGC-AGTTGATTGCTCAA--GATC-----GA--------TAAGT-T-GAAGAG-CT-GTACATACT-TTGAAAATGTACA-A--TA---------TAG-TATTTTGAA-TGA--------------ATGATG------T---C-GTTCATTT----TTTG-GA---GCGGATACT---ATATTTCTAGTCACACTTTTTTCAATTT-TTT---TGGTGC--G--GAAAA-TAA-TAATTTTTAGGCCATTTTTACGACGAAAGAAA-AATCTTACCGCTTAAAATG---AT-----A----TCAT-----A--AAAAATTCA-GTAATTTGGGGAC-TCA--A-G-AATTTTTAAA--TTCC-TGTTA--AAA-T--------TTT-G-AA---AGAA-AACCA--TAAC--TTT-CA----TAC-AC-------------T--------TA-AC-TCGTTAT-------A-----AGATAATTAATTC--GT--TCAGCATATAAACG--AGATA-A-TAAC-T-GT-TAT--AAAGAGATAC---TAAC----TG-----TAATAAGATA-C---------------GA---ACACG----T-ATAA-C-G--GA-------------------------AATT-AAC-TCG-TAT-AA
gi|50 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacga--A---AAA---TGAGCCCA-G--CCGGCTTTCCTAacagtaattttttttttcaaaaatg
gi|51 : ttccaTT----TTTT----T-------TCG-A---AAA---TGAGCTCA-G--CCGGCTTTCaga
gi|7 : TTCGAAGTCTTCAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTGTTT---GTCCT--TC-T---C---A--------------T--ATTAGTTC-AATTGATTGCTCAAA-GATC-----GA-A------TAAGC-TTGAAGAT-TTTGT-CAAACCATTGT---TGTACATA--T----------------TT-----------------T---G-ACAATGGAA-CAT---CAGTACTTTT----GTTG----------A-------ATAA---------C---CTTTTCA-T-------------------------------ATTT-CTTG-CCATTTTTACGACGAA-TGAA-TTTCTTAC--------GTATTGGT-T---A----TCAT-----A--AAAAAATCATGCAATTTGGGGGT-TTT--A--------------------TGTTT--AAATT--------TTA-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-------------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAACTC--GT--T----AT---ACCG--AGATA-C-TAAC-CCGT-TAT--AACGAGTTAAT--T
gi|7 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacAGAT-ACT----A--------------ACT---CGTTA-T--AAC--G-----AGAT--AATTAA--------CTCGTTAT-A--C--CGAGAT---A-C----------T--AA-CCCGTTATAA--CGAGTTA---ATTTTTT-----AATTTT-T-TTT----TTTT----T-------CA--A---AAA---TGAGCCCA-G--CCGGCTTTCGTAttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|8 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatTTCAAAATCTTAAA--TCGT-AAGG-GT-GAG------------TA----GGT-GACGAGTGTTC---GTCCT--TC-T---CTCCACGGGTCCA---ATAT--ATCAGTTC-AACTGATTGCCCAAA-TATC-----GA-TGTAACTTGAAA-TCGAAGAT-ATTGT-CCAACAGGTGT---TGTATATA--TGTAAATTGACTAGATATC--AAA-C--CATA-ATTT---G-ACAATG-------------TATTTTT----GTTG-AATAAAAGAA-------A-ATATC--GCTAC---CTTTTCA-TTT-GTT---AGGAGC-TA--GAAAA-TAA-CATTTTCTTG-TTATATTTATGACGAC-TAGA-ATTCTTAC--------GTA---AT-C---G----TCATC----ATCAAAAAATTATGTAACTAGGGGAT-TTA--A-ATAATTTCTAAG--AGTT-TTGTG--AAA-T--------TTG-A-AA---AGAACAACCCCTTAATGTTTT-CATAG--AT-AC------AA----GC--------TA-AC-TAGTTAT-------A--ACGAGATAATT-----------------T---ACCG--AGATA-C-TGAC-TCGT-TTT--AAAGAGATATTAAAAATTCCTTA-----TAACGATAT
gi|9 : aaacAACGTTTT-CATAG-TACTGC------GTTATAACGAGTTCTTTA-TC-TCGTTCT-------A--ACGAGATACTT----C------------T---AACG--AAATA-ACTAAC-TCGT-TAT--AACGAGGTAGA--TAACTTGTTA-----TAATGAAATT-CTA------GTAATTTTA---AAT--TCGTT-GT-A-A-C-AAAT------------------------TATTCAAT-TCGTTAT-AATTATAT-AAT---------------T--AACT---C--TA-T--AAC--G-----AGAT--AATTAA--------CTTGTTAT-A--A--CGAGATGTTAAC----------T-----CTCGTTATAC--CTAGTTAGATATTTTTTT--TT-TTTAT-A-CTTAGGCCTCT----T-------TC--A---AAAA--CGAGCCCA-G--CCAACTTTCGCA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAATAATTACAATGCTATTACGGACGTTAAGGACCTCTTGATCTGAAATTGTTAAATCAGTGTAGCAGTTAAACTACATGTTAAGAATAAAAGAAACTATAATCAAGAAACGAAAATATATTTATCTAGTTTTTCCAAGTTACTAAATCCGTGATTATTTTTTGTAGAAATACAGTATAACCATGTGAATAAATCATCAGTACAACTTTGCAGTTTTTGAGTTATATATATAATCATTAATGTATATATTTGAAGACATTTTGTCGGTATTGTCAACGAAAGAAACAAAAGCGCTCTTCATATCGCCCGCATTTAATTATTCTTATAAAAGAGTTTTTTGTAATTGAAGGTTAAACTGAAAAGAAGTACATGGCAATAATAATTTCTTTGCCAACAATATGCTGTTAATGTATTACTTCATGAATGTTGATCATTTATGGGGTGAATGACAAGATCATTCGCGTAAGCGCTAGTTTCCAACAGTGAGGTGTGGGCGCAGTCTTATGAGATAAGTTTACAATTCTAGTATCGACAGGCAAAAACAAAG
Unaligned ( gi|10 ): AAATCAATACAAAGATGTATCTTACGGAACCGTTATAGGACGTTCTCTTGTTCCTGAAACCTTTAAATCAAGTGTAGCAATTGTAGAATTACATGTACTTACTGAAAATGTTTTAATCTATATTTTTACAAGTTTATAAACTTCATAATTATTTTGTGAAAATACATATAAACCTTGAAAAATAAATCATCACAGTACATTACTTTGCAGATGTTTGTGAGTTTATATACAACTCACCTACATGTATAATATTTGAATGTCTTTTGTCGTGGTATTGGCCAACAGAAAGAAATCAAATCTGCTCTTGTCTTGGTCAGCCCGCATTTACATTTATAACAGAGATACTTTTTTGTAAATAAAGGCATAAACTGAA
Unaligned ( gi|11 ): TATACTATTTGAAGACCTTTTGTCGTGGTATTGGTCAACAGAAAGAAATCAAAGCTGCTCTTTTCATAGTCAGCCCCGCATTTACATTATTTTATAACAGAGATTTTTTTGTAATTGAAGGCTTAAACTGAAAACGAAGTACATGCAATAATAATTTTCTTTGCCAGACAAATACCTGCTGTTACATGGTATATACCTTCATGAATGGTTGATCATTTATTGGGGTGAATTGACAAAGCATTCGCGTACATGCGCTACTGTTTTCCAAAGTGAGGTGGGTGGGGGCGCAGTCTTATGAGAAGTTGAGTTTACAATTGTCCTTAGTACTCGACAGGCAAAATACAAGAGAAATGT
Unaligned ( gi|15 ): TCAATTACATAACAGACGTAATCACAGGACACCGTTATAGCCATCTCTGTCCTGAAAAATCTTTAATACAAGGTGCAGTTTATAATACATGACTATTTACGAAAATAAAAGGAGAAATCATTAAGTAACGCTTACAAAAAACTGAAAATGTGTTTAAATTGAATATCTTGCAAGTTATAACTCGTGATTATTTTGTAAAT
Unaligned ( gi|20 ): TAAATCATTACAAATACGTATCTTACGGAACTGTTATAGGACCATCTCTTGTTCCTGAAATCTTTAAATCAAGTGTAGCAGTTTAGAATTACATGTACTTTAGAAATAAAAGAAAAATCATAAGTAACGTTACAATAAACTGAAAATGTTTTAATCTAGAT
Unaligned ( gi|30 ): TACAATGTCATTTTTTTTTTATCAGACAGCTATTTTTCTACTACATGGTATATCTTCACGAATGATTGTCATTAATTGATGAATTGACGTCAAGG
Unaligned ( gi|31 ): ATGTAAAATAAATCACCGACAGTACACTTGATTACGATGTTTGTAAGTTTATATTTAACTCATTCTACAGACATAGTATAATATTTGAATACC
Unaligned ( gi|38 ): AAACATCATACTCAAGTTTGAAATTATTCAATTTAAGGGGAGATGCATAACTGATGCTTCTGCCCTTTCATT
Unaligned ( gi|41 ): CAACTCATCTACATGTATAATACTTAAATATATGTTGTCGTGGTAAAAAAAAAAAAAACAA
Unaligned ( gi|44 ): ACTTCAACATCCTGGAAAGTGTGGGGGCAAATAGCACCAAAAAAACC
Unaligned ( gi|52 ): AATATTTTTAACATAGACACATTTCTATATTA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 2222222222222 66666666666666666666666666 1111 11111 22222222 111 33333333333333333333333333333333333333333333 1111111 1111 2222222 1111 11111111 1111 1111111111 22222222 1111111 1 11111111 111 666666666666666666666666666666 1111111 111111111111 111 11111 8888888888888888888888888888888888888888888888888888888888888888888888888888 333333333333333333 111 11111111 1 111111111111 111111 111
lowQualScore : 55 3 3 3 3 0000000000000 7777 3 1 7777 44 6 22222222222222222222222222 2222 5 22222 55555555 4 33 55 0 5 7777 000 88888888888888888888888888888888888888888888 2 8888888 8888 4 6 3333333 1 66 1 777 4 4 0000 77777 4 4 1 555 4 4 66666666 0000 4444444444 00000000 8 4444444 6 66 6 99 4 44444444 7777 111 2 4 2 3 2 333333333333333333333333333333 3 3 0000000 44 2 44 000000000000 44 777 3 3 44 7777 77 00000 5555555555555555555555555555555555555555555555555555555555555555555555555555 4 1 3 3 4 111111111111111111 555 3 44 44444444 77 1 0 88888888 2 88888 444 000000000000 33 2 33 1 888 999999 2 66666666 4444 6666666 111111 222 3 22
lowQualScore : .. . . . . ............. .... . . .... .. . .......................... .... . ..... ........ . .. .. . . .... ... ............................................ . ....... .... . . ....... . .. . ... . . .... ..... . . . ... . . ........ .... .......... ........ . ....... . .. . .. . ........ .... ... . . . . . .............................. . . ....... .. . .. ............ .. ... . . .. .... .. ..... ............................................................................ . . . . . .................. ... . .. ........ .. . . ........ . ..... ... ............ .. . .. . ... ...... . ........ .... ....... ...... ... . ..
lowQualScore : 00 3 6 6 6 6666666666666 7777 6 0 5555 66 7 66666666666666666666666666 0000 0 55555 22222222 4 88 44 1 0 1111 000 44444444444444444444444444444444444444444444 5 1111111 9999 4 9 9999999 0 11 7 888 4 4 1111 88888 4 4 8 333 4 4 11111111 4444 3333333333 77777777 9 7777777 9 11 0 55 0 55555555 2222 000 5 6 7 6 2 333333333333333333333333333333 6 6 0000000 22 6 66 777777777777 22 444 3 3 66 2222 22 00000 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 4 6 6 5 000000000000000000 000 1 22 88888888 33 0 7 55555555 4 11111 111 999999999999 22 4 11 2 333 555555 4 88888888 5555 8888888 111111 999 8 66
consensus : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAGTTC-GATTGATTGCTCAAA-GATC-----GA-N------TAAGC-TCGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TTN-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-TAC-AC------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------AT-----TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--CGAGTTA---ATTTTTTT--TTATTTTT-T-CTT----TTTT----T-------TC--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
Reference ( family-375 ) : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAGTTC-GATTGATTGCTCAAA-GATC-----GA-N------TAAGC-TCGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TTN-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-TAC-AC------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------AT-----TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--CGAGTTA---ATTTTTTT--TTATTTTT-T-CTT----TTTT----T-------TC--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|1 : TTTGAAATCTTAAA--TTGT-AAGG-GG-GAG------------TG----GGTCAACGAGTTTTT---GTCCT--TC-T---C---A-------------TT---TCAGTTCTG--TGATTGC-CAAA-GATC-----GA-G------TAAGC-TTGAAGAT----------------GT---TGTACATA--T----------------TT-----------------T---G-ACAATGGAACAATATTCAGTACTTTT----GTTG-AATAAAGAAATCTAATTATAGATC--GTCGC---CTTTTCA-TTT-TCT---TTGAGC-TGCGGAAAA-TAA-CATTTTCTAG-CCATTTTTACGACAAA-TAAATAATCTTAC--------TTA---ATGC---GTTTATCAT-----A--AGAAAATAATGTAATTTGGGGAC-TTCCAA-G-AATTTC--ATTATGTTCTGTTT--AAA-T--------TTT-C-AATAGAAAAAAACCCTTTAACGTTTT-CATA
gi|12 : taaatcattacaaagacgtatcttacggaacctcttgttccttgaaatctttaaatcaagtgtagtgcaaatttagaattacatgtacttaaggaataaaagaaaaatcataagtaaacgttacaagaaactgaaaatgatttaatctagattttttcaagtttataaactccgtgatattttgtagaaatacatgaaatataaatcacaatatttgaataccttttgtcgtttggtattggtcaacagaaagaagctactcttgtcttagtcagcccgcatttacatttataacagagataaaatattttttgtaattgaaggctataactgaaaacgaagtataatgccagtaataattttcttgccagacaaatatctgctgtatgtacatggttatataccttcaatgaatggttgatcatttattggtgaattgacaaagcagttcgcgtacagtgtactactgttttttcaaagtgagagtgggtggcggcgcgcagtcttacgagaagtgtgatgttaaaattgtccataatactcgacaggcaaaatacaagagaaattgtaatatctaagtaaggctaaacttcaacatcctggacagtgttggaaaggggagggggggggggggggaacaaaaaagccacaaaaaactagaaaatctttatttactcgaacGC-TCGAAGAT-TTTGT-CAAACAATTGT---TGTACAT----G-------ACTAG-T--T--AA--CGATA-A--TATTTTG-ACAATGGAA-GAT---CAGTACTCTT----GTTG-AATATTAGAA-------ATAAATC--GTCAC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAA--TAA-C--------------TTGTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-CTTCA----TCAT-----A--AAAAAATC--GTATTTTGGGGAT-TTA--AAG-AATTTCAAAT--TGTT-TGTTT--AAA-T--------TTTTA-AA---AAAACGACCCCTTAACGCTTT-CATAG-------------AT----AC--------TA-AC-TCGTTAT-------A--TCGAGATACTTAAGTT--GT--T----AT---AACG--AGATA-ATTAAT-TCGT-TAT--AACGAGATATA--TAAC
gi|13 : ---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAA-TATC-----GA-C------TTAGC-TC-AACAT-TTTGT-GAAACCATCGT---TGCACATACATG-------ATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAAATAA-CATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GTG---AT-C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATGC--A-G-AATTTCTAAT--TGTTATCTTTA-AAA-T--------TTG-G-AG---AGAAC
gi|14 : T---CAGTACTTTT----TTTTTAATAAAAGAA-------ATAGATC--GTCGC---CTTTTCA-TTT-CTT---TGGAGC-TG--GAAAA-TAA-TATTTTCTAG-CCATTTTTACGACGAA-TAAA-TTTCTTAC--------CTA---AT-C---G----TTATCATTAA--AAAAAATCATGTAATTTGGGGAC-TTC--A---AGTTTCAAAT--TGTTCTGTTT--AAA-T--------TTT-C-AAT--AGAAAAACCCTTAAACGTTTT-C------AC-AC------AC----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAA
gi|16 : CGAGATAACTA-------------TA---CCTTGTT---------C-G-AAAG------------------------AGAG-AAC-TCGTTAT-AAAGAGAT-ACT----AGTTAACGCTTTCAAACT---CGTCA-TTTCAC--ATTT--A-AT--ACT-AA--------CTCGTTTC-A--A--CGAGA------C----------TCAAG-CTCATTATAA--CGGGTTA---ATATT-------ATTTGT-T-CTTA---CTTT----T-------TC--A---AAAA--TGAGTCCA-C--CCGGCTTTCGTA
gi|17 : gACGAGATAAA--TAACTCTTTA-----GAATGAGATA-CTA------A------------CTCGTTTTG-AT-----G-AGAT------------------------C-TA-AAC-TCATTAT-AACGAGAT-AAT---------------T--AATT---CATTA------C--G-----AGAT--ATT-AA--------CTGGTTAA-A--A--CGAGAA---AAC----------T--AA-ATCGCTAGAA--CG-TTTA---ATgaaa
gi|18 : --AGATA-GCAAAC-TCGA-TAT--AACGA-AGGTT--TAACT--TTAACTATTAACTTAATA-TTAGAAAATATC----TA---ACTCGT---T-A--A-C-C-AGAT------------------------AACT-AAA-TCGCTAT-AACGATAT-GAT---------------T--AGCC---CATTA-T--AAC--G-----ATAT--AATTAA--------TTCCTTAT-A--A--CGAGAT---AAT----------T--AA-TTCATTATAA--CGcgaagtacttaatgtactgataaccggtactgtttaga
gi|19 : -TGTTT--AAA-T--------TTT-GGAA---AGAACG--CCCCTAACGTTTT-AAAAG-------------AT----AC--------TA-AC-CCGTT-T-------A--TCCAGATAATTAAATT--GTTAT----AT---AACG--AGATA-C-TAAC-TCGT-TATAAAACGAGTTATT--
gi|19 : CGTTTT-AA-AAGAT-ACT----A--------------ACC---CGTT--T--ATC--C-----AGAT--AATTAA--------ATTGTTAT-ATAA--CGAGAT---A-C----------T--AA-CTCGTTATAAAACGAGTTATT-ATTTTTTT--TTTTTATTAT-CAT----TTTT----T-------T--------AA---TGAGCCCA-G--CCGGCTTTCGTAattttttttttttattatcatttttttaatgagcccagccggctttcgtaa
gi|2 : tgtttaaattttggaaagaacgcccctaaACCTTAAA--TTGT-AAGG-GG-GGGGGGGCGGGATGGTGCAGTGGT-AACGA-TCTGT---GTCCT--TC-T---C---AT---TTTA---GGTT--G-CAGT---G--TGATTGCTCAAGCGAGCATGCAGACG------TAAGCTTTGAAGAT-Ta
gi|2 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggTGGAACAATATTCAGTACTTTT----GTTG-AATAAA-GAA-------ATAGATC--ATCGC---C-TTTCA-TTTACTTGTGAGGAGCGTG--GAAAA-TAACCATTTGTGAG-CCATTAGTACGACGAA-GAAA-CTTCAATC--------GTT---AT-C---G------AT-----C--AAAAAATCATG-AATTTAGCGAC-TTC--T-C-TATTTCAAAT--TGTT-TCTTTTAAAA-TATGTTCAATTA-G-AA---A-AAGA--CCTTTAACGTTTC-------TAC--C------AC----AC--------TACACATCGTTATAACCGTAA--ACAAGATAATTAAT----GTA-T----GT---AACGCAGGATA-ATTAACATCGTGTAT--AAC-AGATAAT--TAACTCG-TA-----TTGCGGGA-----A------AT-----TA-----TCAT-GTTCAT-A-TAG-AGACATGATGATAGAGGTGCTGGAAACGAATT-AAT-TC--TATAAACGACACAAAT----A----------T--ACGTG--CGTTA-T--AAC--GAGTATAGAT--AGT-AATACGAGATTTCGTTATCA--AGGCGAGAT---AAT----------C--AATCTCGTTATAA--CGAG-TA---ATTTTTAT--Tacaggtattttgggactggaacaatattcagtacttttgttgaataaagaaatagatcatcgcctttcatttacttgtgaggagcgtggaaaataaccatttgtgagccattagtacgacgaagaaacttcaatcgttatcgatcaaaaaatcatgaatttagcgacttctctatttcaaattgtttcttttaaaatatgttcaattagaaaaagacctttaacgtttctaccacactacacatcgttataaccgtaaacaagataattaatgtatgtaacgcaggataattaacatcgtgtataacagataattaactcgtattgcgggaaattatcatgttcatatagagacatgatgatagaggtgctggaaacgaattaattctataaacgacacaaatatacgtgcgttataacgagtatagatagtaatacgagatttcgttatcaaggcgagataatcaatctcgttataacgagtaatttttatta
gi|21 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggaccttaaattgtaagggggggggggcgggatggtgcagtggtaacgatctgtgtccttctcattttaggttgcagtgtgattgctcaagcgagcatgcagacgtaagctttgaagattacaggtattttgggacC-TCGTTAT-AACG-GAT-A------A----------T--AACT---CGTTAAT--AACCCG-----AGATTAAGT-AA--------CTAGTTAT-AT-AT-CGA-AT---A-C----------T--AA-CTCGTTA-AA--CGAGTTA---ATTTTTTG--TAAATTTT-T------------------------TC--A---AAAAAATGAGCTCA-G--CAGGCTTTCGTAa
gi|22 : ATTTGAAATTTTAAA--TTGT-AAGG-GG-AAG------------TG----GGT-AACGAGTTTTT---GTCCT--TC-T---C---Agttacatgtatgt
gi|23 : gtaaggctaaacttcaacatcctggaaaagtgtggaagggggggggggagagaacacgtaaactagacatctttactcaa----A----------T--AACTACCTGTAA-T--AAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGAT---GAA----------T--AA-CTGTTTAT--------TTA---TTTATTTT--TTATTTTT-T-TTT----TTTT----TGTATTCTTC--A---AAA---TGAGCCCA-T--CTAGCTTCCt
gi|24 : ttc----A----------T--AACTACCTGTAA-T--AAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGAT---GAA----------T--AA-CT-GTT-TA-------TTT---ATTTATTT--TTATTTTT-T-TTT----TTTTATTCT-------TC--A---AAA---TGAGCCCA-T--CTAGCTTCCta
gi|25 : ttcGAAATCTTAAA--TTGT-AAGG-G------------------G----GGT-AACGAGTTTTT---GTCAT--TC-T---C---Ata
gi|26 : aaggctaaacaacagtgtgtggaaaggggggggggggcacaaaaacctagaaatctttactcgaactctTTCGAGATCTTAAA--TCAT-GAGG-GG-GAG------------GG----ACT-AACAAGACTTC---ATCCT--TC-TCTAC---ACGGGTCCA---ATTC--ATTAtt
gi|27 : ggcacaaaacataaattataagacgttttcactcaaatTTA-T--AAC--G-----ATAT--ATT-AA--------TTCCTTAG-A--C--CGAAAT---AATAAGCTCGCTTT--AA-CTCGTTATAA--CGAGCTG---ATTTTT---------------C------TCTC----T-------TC--AAATAAA---TAAGCCAA-AGTCCGGCCTTCGT
gi|28 : -------A--ATGAGTTAGC-AGTTC--GT--T----AA---AATG--AGATA-C-TAAC-TCGT-TTT--AACGAGAC-TC--TATGTCGCAA-----TAACGAAATA------------------------TTGTTATT-AT-G-C-G-ACAT------------------------t
gi|29 : TCGTT-AT-AAC-G-AAAT------------------------AATG-CAC-TTGTTAT-AACGAGAC-AAT---------------T--AAAT---CGTTA-T--ATC--T-----CGATA-ATT-AA--------CTCTTTAC-A--A--CGAGAG---AAC----------T--AA-CCCGTTATAA--CGAtttttgactgaaatgtgaga
gi|3 : TTTGAAATCTTAAA--T----GAAG-GG-GAG------------TG----GGT-AACGAGTTTTT---G-CCT--TC-T---C----------------ATT---TT-GTTC-AGTTGATTGCTCAAA-GATC-----GA-G------TAAGC-TTGAAGATGTTTGA-CAaata
gi|32 : tcattacaaagacgtatcttacggaaccgttataggaccatctcttgttcctgaaatctttaaatcaagtgtagcagtttagaattacatgtactttagaaataaaagaaaaatgataagtaacgttacaatatactgaaaatgtattaatatagatttttccaagtttataaactcgatttttgtagaaatacatgtaaaataaatcaccacagtacattactttacagatgtttgtaagtttatatttaactcatctacatatataattatttgaatcaaatctgctcttgtcgtaatcagcccgcatttacatttataaatagatacatattttttgtaattgaaggcataaactgaaaatgaagtacatgcagtaataattttcttttccagacaaatatctgttgaatggttgatcatatattggtgaattgacattgtacggtcgcgtacatgtactactgtttttcaaagtgaggtgggtggggggtgcagtcttatgaaaagttgagtttacaattgtccataatactcgacaggacaggcaaaatataagagaaatttttatctaactaaggctaaacttcaacatcctggaaagtgtgggggcaaagagcacaaaacactcgagatctttactcgaacT-AA--------CTCGTTAT-A--A--CGAGAT---AAT----------T--AT-CCCGTTATAA--CGAGTT-----TTTTTTT--TTGTTTTT----TT----TTCC----T-------CCA-A---AAA---TGAGCCAA-G--CCGGCTTTCGTAtatgttttgacaatggaacaattttcgttttaaattttcaatataaaa
gi|33 : C--------TA-TC-TCGTTAT-------ATTGCGAG-TAATTAATTC--AG--T----AA---AACG--AAATATATTACT-TCAT-TAT--ACCAATATAAT--TCTTTCCTTA-----TAATGAGGTA-
gi|34 : --------CTCGTTAT-A--A--CGAGAT---AAC----------T--AG-CTTGTTATAA--CGAGTTA---ATTTTTTT--TTAATTTT-T-C-----------------------CA-A---AAA---TGAGCCCA-G--CTGGCTTTCGTAa
gi|35 : atAGATAGT---ATCTCGTTA-----AATCGAGATT-ATA------AT-----TACTAGCTCGTCATT-AT-A-A-GGAGAT------------------------A--T-GATGTCGTTAT-AACGAGAT-GTT----A----------aaa
gi|36 : AAATCTTAAA--TTGT-AAGGTGGTGGG------------TG----GG--GGCTGGTA--C---GTCCTACCC-TG--C---ATGGGTTCA---AATC--ACCAGTTT-AA--AATTGCgtga
gi|37 : aA--------CTTGTTGC-A--A--CGAGAT---A-C----------T--AA-CTCGTTATAA--TGAGTTA---A----------------T-T-CTT----TCTT----C-------CA--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|39 : GTTATAA--CGTGTTA---ACTTTTTTTGTTATTTTT-TGCTT----TTTT----T-------TC-------AA---TGAGCCCATG--CGGGCTTTCGTc
gi|4 : ATTTAAGATTTTAAAAATCGTTAAGT-GG-AAA------------GG----GGT-AATGAGCGTAT---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAATTT-GATTGATCGATCAAA-TATC-----GA-C------TTAGC-TC-AACAT-TTTGT-GAAACCATCGT---TGCACATACATG-------ATTAGGTATT--AAAACGACA-AGATAC---GGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC---CTTTTCA-TTT-CTT---AAGAGC-TA--GAAAA-TAA-CATTTTCTTT-TCATTTTTGTCACGAA-TAAA-ATTCTTAC--------GT----AT-C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATGC--A-G-AATTTCTAAT--TGTTATCTTT--AAA-A--------TTG-G-AG---AGAACACACCTTTAACGTCTTACATAATTAC-ACTTTGGTATAATAAC--------TA-AC-TC-TTAT-------A--ACGAGGCAATTAATTTCAGT--T----CT---AACG--AGATA-CTTAGA-TCGT-TAT--AACGAGATTTT--TAAGTCG--A-----TAACGAGATG-CTAC-----ATG----TA---ATTTGTTGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGATA--AACGAGGT-ACTGCAAG----------T--AACT---CGTTA-T--AAT--G-----AGAT--ACT-AA--------CTCGTTGT-A--A--CGAGAT---AAC----------C--AA-ATAGTTATAA--CGTGTTA---ACTTTTTTTGTTATTTTT-TGCTT----TTTT----T-------TC-------AA---TGAGCCCATG--CGGGCTTTCGTA
gi|40 : gtAACGTTTT-CATA----C-AC------CT--------------TA-AC-TCGTTAT-------A--ACAAGGTAAGCAATTC--GT--T----AT---AACG--AGATA-TT
gi|42 : TT--TT-TTTTT-T-ATT----TTTC----T-------CC--A---AAAA--TGAGCCCA-G--CCGGCTTTCGTA
gi|43 : a-AA--------ATCGTTGT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--caca
gi|43 : -------A--ACAAAAAAA--AAATC--GT--T----GT---AACG--AGATA-ACTAAC-TCGT-TAT--AAtttttttgtttttt
gi|45 : TT-T-TTT----ATTT----T-------TCCAA---AAA---TTAGCCCA-G--CCGGCTTTCGTAtttt
gi|46 : T-T-TTT----TTTC----T-------TCCAA---AAA---TGAGCCCA-G--TCGGCTTTCGTAcaca
gi|47 : --A---AAA---TGAGCCCA-G--CCGGCTTTga
gi|48 : cca-T-TTT----TTTT----T-------TC--A---AAAA--TGAGCTCA-G--CCGGCTTTCtaattcgtaagtatact
gi|49 : T----TTTT----T-------TC--A---AAAA--TGAGCTCA-G--ACGGCTTTCGTct
gi|5 : ACTTGAAATCTTAA---TTGT-AAGG-GG-GAA-------------G----GGT-A-CGAGTTTTTATTGTCCT--TC-T---C---A-------------TT---TTAGTGC-AGTTGATTGCTCAA--GATC-----GA--------TAAGT-T-GAAGAG-CT-GTACATACT-TTGAAAATGTACA-A--TA---------TAG-TATTTTGAA-TGA--------------ATGATG------T---C-GTTCATTT----TTTG-GA---GCGGATACT---ATATTTCTAGTCACACTTTTTTCAATTT-TTT---TGGTGC--G--GAAAA-TAA-TAATTTTTAGGCCATTTTTACGACGAAAGAAA-AATCTTACCGCTTAAAATG---AT-----A----TCAT-----A--AAAAATTCA-GTAATTTGGGGAC-TCA--A-G-AATTTTTAAA--TTCC-TGTTA--AAA-T--------TTT-G-AA---AGAA-AACCA--TAAC--TTT-CA----TAC-AC-------------T--------TA-AC-TCGTTAT-------A-----AGATAATTAATTC--GT--TCAGCATATAAACG--AGATA-A-TAAC-T-GT-TAT--AAAGAGATAC---TAAC----TG-----TAATAAGATA-C---------------GA---ACACG----T-ATAA-C-G--GA-------------------------AATT-AAC-TCG-TAT-AA
gi|50 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacga--A---AAA---TGAGCCCA-G--CCGGCTTTCCTAacagtaattttttttttcaaaaatg
gi|51 : ttccaTT----TTTT----T-------TCG-A---AAA---TGAGCTCA-G--CCGGCTTTCaga
gi|7 : TTCGAAGTCTTCAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTGTTT---GTCCT--TC-T---C---A--------------T--ATTAGTTC-AATTGATTGCTCAAA-GATC-----GA-A------TAAGC-TTGAAGAT-TTTGT-CAAACCATTGT---TGTACATA--T----------------TT-----------------T---G-ACAATGGAA-CAT---CAGTACTTTT----GTTG----------A-------ATAA---------C---CTTTTCA-T-------------------------------ATTT-CTTG-CCATTTTTACGACGAA-TGAA-TTTCTTAC--------GTATTGGT-T---A----TCAT-----A--AAAAAATCATGCAATTTGGGGGT-TTT--A--------------------TGTTT--AAATT--------TTA-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-------------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAACTC--GT--T----AT---ACCG--AGATA-C-TAAC-CCGT-TAT--AACGAGTTAAT--T
gi|7 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacAGAT-ACT----A--------------ACT---CGTTA-T--AAC--G-----AGAT--AATTAA--------CTCGTTAT-A--C--CGAGAT---A-C----------T--AA-CCCGTTATAA--CGAGTTA---ATTTTTT-----AATTTT-T-TTT----TTTT----T-------CA--A---AAA---TGAGCCCA-G--CCGGCTTTCGTAttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|8 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatTTCAAAATCTTAAA--TCGT-AAGG-GT-GAG------------TA----GGT-GACGAGTGTTC---GTCCT--TC-T---CTCCACGGGTCCA---ATAT--ATCAGTTC-AACTGATTGCCCAAA-TATC-----GA-TGTAACTTGAAA-TCGAAGAT-ATTGT-CCAACAGGTGT---TGTATATA--TGTAAATTGACTAGATATC--AAA-C--CATA-ATTT---G-ACAATG-------------TATTTTT----GTTG-AATAAAAGAA-------A-ATATC--GCTAC---CTTTTCA-TTT-GTT---AGGAGC-TA--GAAAA-TAA-CATTTTCTTG-TTATATTTATGACGAC-TAGA-ATTCTTAC--------GTA---AT-C---G----TCATC----ATCAAAAAATTATGTAACTAGGGGAT-TTA--A-ATAATTTCTAAG--AGTT-TTGTG--AAA-T--------TTG-A-AA---AGAACAACCCCTTAATGTTTT-CATAG--AT-AC------AA----GC--------TA-AC-TAGTTAT-------A--ACGAGATAATT-----------------T---ACCG--AGATA-C-TGAC-TCGT-TTT--AAAGAGATATTAAAAATTCCTTA-----TAACGATAT
gi|9 : aaacAACGTTTT-CATAG-TACTGC------GTTATAACGAGTTCTTTA-TC-TCGTTCT-------A--ACGAGATACTT----C------------T---AACG--AAATA-ACTAAC-TCGT-TAT--AACGAGGTAGA--TAACTTGTTA-----TAATGAAATT-CTA------GTAATTTTA---AAT--TCGTT-GT-A-A-C-AAAT------------------------TATTCAAT-TCGTTAT-AATTATAT-AAT---------------T--AACT---C--TA-T--AAC--G-----AGAT--AATTAA--------CTTGTTAT-A--A--CGAGATGTTAAC----------T-----CTCGTTATAC--CTAGTTAGATATTTTTTT--TT-TTTAT-A-CTTAGGCCTCT----T-------TC--A---AAAA--CGAGCCCA-G--CCAACTTTCGCA
blockSeqs : AA T T T T GGGGCGGGATGGT CAGT . C TATT AC A GCACGGGTCCAGTAAATTGAA GAT C ATGCA TGTAACT T CG GT A AATT AAA TGTAAATTGACTAGATATCAAACCATAATTTG G CAATATT CAGT T A TACT A TA A ACT A A GTGA GTG A C T AGG A . CGCTTAAA ATTG CTTCA CATTAA A AAAG A . A TA T ATGTTCAA TTA T C A C A T GTACTGCGTTATAACGAGTTCTT C A AACCGTA TT A CA TCAGCATATA CA TAT A G AA TTAA GC ACTAT AATTATCATGTTCATATAGAGACATGATGATAGAGGTGCTGGAAACGAATT G T A A A GCAAGT ACC A . GAGTAT TA T T TACGAGAT C TAA GTT ATAAGCTCGCTT . T AA A GAT TTGTTA A CTTAGGC ATTC GTATTCT AAAT AAA T GT
blockSeqs : . T . . . T . . T T . A GCACGGGTCCAGTAAATTGAA AGT . . CG . TG T . CATC . CATGATTAGGTATTAAAACGACAAGATACGG G GAT CAGT . T . T . A . . . A TG . . T TT . . . A CG CATC A AAAT T . C A . . TGG . C A T . A ATTACACTTTGGTATAATAAC . . . . T . TATAT . GC . . . AA CT . TCTAGTAATTTTAAATTCGTTGTAACAAATTATTC . C . . A AT ACC . . CCG A A T . . AGG . AC . . . A TT TTGTTA . GCTT . . CAA A T .
blockSeqs : . T . . . G . . T T . . CTACACGGGTCCAATTCA GAT . . C . TG T . CATC . CATGATTAGGTATTAAAACGACAAGATACGG G AAT . . A . G . G . . . A TA . . G AG . . . G CG A . CAG A . A . . . GG . A C C . T GATACAAGC . . . . T . ATGT . AT . . . TT GT . ATTAGAAAATATCTAACTCGTTAACCAGATAACT . T . . C AT G . . G . A T . . TAT . AT . . . A . TTTT . GCTT . . CAA A . .
blockSeqs : . C . . . T . . C T . . CTCCACGGGTCCAATATA AGT . . G . TG T . CATT . GACTAGTTAACGATAATATTTTG G AAT . . T . G . G . . . T TG . . T AG . . . A CG C . CTC A . . . . . TC . C A T . T ACACACAC . . . . T . TAA . CT . . . TT CT . TATAATTACTAGCTCGTCATTATAAGGAGATAT . T . . A AT . . . G . G T . . A . AT . . . A . GTAA . CAT . . AA A . .
blockSeqs : . T . . . T . . T C . . GCATGGGTTCAAATCA AAT . . C . CG T . AGGT . TATAGTATTTTGAATGA G CAT . . C . T . A . . . A TA . . T TT . . . T CG C . CAG T . . . . . AG . G A T . T TACCACAC . . . . T . TAA . TT . . . AT GT . GCTACATGTAATTTGTTGTTATACGAGATAATT . T . . A AT . . . C . G . . . A . AA . . . A . TTTA . TTT . . AA A . .
blockSeqs : . C . . . G . . A T . . CATTTTAGGTTG AAC . . A . C C . TTT . TTTTG . T . . A . T . A . . . T TA . . T TG . . . G TA C . AAG T . . . . . GG . C A C . T TACACT . . . . T . TCT . AC . . . TC T . ACTAACTCGTTTTGATGAGATCTA . T . . T T . . . A . A . . . T . AA . . . A . TTTA . TTT . . GA . . .
blockSeqs : . T . . . T . . G C . . CATT AA . . . . C T . . . . . . . A . A . . . A G . . . TG . . . A CG A . CA T . . . . . TG . C . C . T GATAC . . . . A . TAT . AC . . . AT G . ACGAACACGTATAACGGAAATT . A . . C T . . . A . A . . . T . AC . . . A . TTTG . CTT . . A . . .
blockSeqs : . C . . . T . . T T . . CATT G . G A . . . . T . . . . . . . . . . . . . . . A A . TA . . . . . . AG . C . . . . CACCT . . . . T . TGT . C . . . GT G . . T . . C A . . . G . T . . . C . AT . . . A . TTTA . ATT . . A . . .
blockSeqs : . C . . . . . . G T . . CATA . . . . GA . . . . GATAC . . . . C . TAT . C . . . TT . . . . . . A T . . . T . T . . . A . AC . . . T . TTT . TTT . . A . . .
blockSeqs : . . . . . . . . G C . . . . . . . . . . T . A . . . AT . . . . A . . . G . C . . . A . AC . . . T . TTT . TTT . . A . . .
blockSeqs : . . . . . . T . C . . . GA T . . . G . A . . . A . AC . . . A . A . TTT . . A . . .
blockSeqs : . . . C C . . G . A . . . A . AC . . . A . . . TTT . . A . . .
blockSeqs : . . . A . C . . . . . . . TT . . A . . .
blockSeqs : . . . A . C . . . . . . C . . A . . .
blockSeqs : . . C . C . . . . . C . . A . . .
blockSeqs : . . A . C . . . . . . . A . . .
blockSeqs : . . . A . . .
blockSeqs : . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : AAT* T* CATT TATGACTAGGTATTAAAACGATAATATG**************** AAT**** ******* TA*** CG******** NAG**** ** *** T***************** ** G******* AC********** ** TTTA** TTT***** ***
originalCons : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAGTTC-GATTGATTGCTCAAA-GATC-----GA-N------TAAGC-TCGAAGAT-TTTGT-CAAACCATCGT---TGTACATA--TG-------ACTAG-TATT--AAA-CGACA-A-ATAC---G-ACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGC-TG--GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---AT-C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTC--A-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TTN-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-TAC-AC------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------AT-----TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANT----A----------T--AACT---CGTTA-T--AAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--CGAGTTA---ATTTTTTT--TTATTTTT-T-CTT----TTTT----T-------TC--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
finalCons : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAGTTCAAT-TGATTGCTCAAA-GATC-----GA-N------TAAGC-TCGAAGATT-TTGT-CAAACCATTGT---TGTACATATATGACTAGGTATTAAAACGATAATATG----------------ACGATGGAAAAT----CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC---CTTTTCA-TTT-CTT---AGGAGCTA---GAAAA-TAA-CATTTTCTNG-CCATTTTTACGACGAA-TAAA-ATTCTTAC--------GTA---ATCG--------TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TTNAG----AATTTCNAAT--TGTT-TGTTT--AAA-T--------TTN-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-TAC-AC------AT----AC--------TA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NTTAAC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATA-CTA------AT-----TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGAT-ANTT-----------------AACT---CGTTA-T--AACG-------AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGAT---AAC----------T--AA-CTCGTTATAA--CGAGTTA---ATTTTTTTTTA--TTTTT-TTTT-----TTTT----T-------TC--A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAATAATTACAATGCTATTACGGACGTTAAGGACCTCTTGATCTGAAATTGTTAAATCAGTGTAGCAGTTAAACTACATGTTAAGAATAAAAGAAACTATAATCAAGAAACGAAAATATATTTATCTAGTTTTTCCAAGTTACTAAATCCGTGATTATTTTTTGTAGAAATACAGTATAACCATGTGAATAAATCATCAGTACAACTTTGCAGTTTTTGAGTTATATATATAATCATTAATGTATATATTTGAAGACATTTTGTCGGTATTGTCAACGAAAGAAACAAAAGCGCTCTTCATATCGCCCGCATTTAATTATTCTTATAAAAGAGTTTTTTGTAATTGAAGGTTAAACTGAAAAGAAGTACATGGCAATAATAATTTCTTTGCCAACAATATGCTGTTAATGTATTACTTCATGAATGTTGATCATTTATGGGGTGAATGACAAGATCATTCGCGTAAGCGCTAGTTTCCAACAGTGAGGTGTGGGCGCAGTCTTATGAGATAAGTTTACAATTCTAGTATCGACAGGCAAAAACAAAG
Unaligned ( gi|10 ): AAATCAATACAAAGATGTATCTTACGGAACCGTTATAGGACGTTCTCTTGTTCCTGAAACCTTTAAATCAAGTGTAGCAATTGTAGAATTACATGTACTTACTGAAAATGTTTTAATCTATATTTTTACAAGTTTATAAACTTCATAATTATTTTGTGAAAATACATATAAACCTTGAAAAATAAATCATCACAGTACATTACTTTGCAGATGTTTGTGAGTTTATATACAACTCACCTACATGTATAATATTTGAATGTCTTTTGTCGTGGTATTGGCCAACAGAAAGAAATCAAATCTGCTCTTGTCTTGGTCAGCCCGCATTTACATTTATAACAGAGATACTTTTTTGTAAATAAAGGCATAAACTGAA
Unaligned ( gi|11 ): TATACTATTTGAAGACCTTTTGTCGTGGTATTGGTCAACAGAAAGAAATCAAAGCTGCTCTTTTCATAGTCAGCCCCGCATTTACATTATTTTATAACAGAGATTTTTTTGTAATTGAAGGCTTAAACTGAAAACGAAGTACATGCAATAATAATTTTCTTTGCCAGACAAATACCTGCTGTTACATGGTATATACCTTCATGAATGGTTGATCATTTATTGGGGTGAATTGACAAAGCATTCGCGTACATGCGCTACTGTTTTCCAAAGTGAGGTGGGTGGGGGCGCAGTCTTATGAGAAGTTGAGTTTACAATTGTCCTTAGTACTCGACAGGCAAAATACAAGAGAAATGT
Unaligned ( gi|15 ): TCAATTACATAACAGACGTAATCACAGGACACCGTTATAGCCATCTCTGTCCTGAAAAATCTTTAATACAAGGTGCAGTTTATAATACATGACTATTTACGAAAATAAAAGGAGAAATCATTAAGTAACGCTTACAAAAAACTGAAAATGTGTTTAAATTGAATATCTTGCAAGTTATAACTCGTGATTATTTTGTAAAT
Unaligned ( gi|20 ): TAAATCATTACAAATACGTATCTTACGGAACTGTTATAGGACCATCTCTTGTTCCTGAAATCTTTAAATCAAGTGTAGCAGTTTAGAATTACATGTACTTTAGAAATAAAAGAAAAATCATAAGTAACGTTACAATAAACTGAAAATGTTTTAATCTAGAT
Unaligned ( gi|30 ): TACAATGTCATTTTTTTTTTATCAGACAGCTATTTTTCTACTACATGGTATATCTTCACGAATGATTGTCATTAATTGATGAATTGACGTCAAGG
Unaligned ( gi|31 ): ATGTAAAATAAATCACCGACAGTACACTTGATTACGATGTTTGTAAGTTTATATTTAACTCATTCTACAGACATAGTATAATATTTGAATACC
Unaligned ( gi|38 ): AAACATCATACTCAAGTTTGAAATTATTCAATTTAAGGGGAGATGCATAACTGATGCTTCTGCCCTTTCATT
Unaligned ( gi|41 ): CAACTCATCTACATGTATAATACTTAAATATATGTTGTCGTGGTAAAAAAAAAAAAAACAA
Unaligned ( gi|44 ): ACTTCAACATCCTGGAAAGTGTGGGGGCAAATAGCACCAAAAAAACC
Unaligned ( gi|52 ): AATATTTTTAACATAGACACATTTCTATATTA
Alignments
lowQualScore : 2222222222222 77777777777777777777777777 2222222 99999999999999999999999999999999999 1111111111 1111 1111111 1111 11111 111111111111111111111 22222222 1111111 1 11111111 111 55555555555555555555 1111111 33333333333333333 1111 8888888888888888888888888888888888888888888888888888888888888888888888888888 111111 11111111 11 11111111111 1111111 11111111
lowQualScore : 55 3 3 3 3 0000000000000 7777 3 1 7777 44 6 66666666666666666666666666 4 4 8 5 0000000 66 1 66 777 66 888 0 33333333333333333333333333333333333 1 6666666666 8888 4 6 4444444 2 66 1 4 777 4 0000 11111 4 555 2 4 4 4 888888888888888888888 00000000 8 5555555 6 66 6 99 4 44444444 7777 111 2 4 2 3 2 55555555555555555555 3 3 0000000 44 1 1 44 888888888888 33 22222222222222222 3 6 3 44 0000 44 99999 7777777777777777777777777777777777777777777777777777777777777777777777777777 4 1 3 1 000000 3 3 33 3 00000000 00 1 8 88888888 2 88888 444 44444444444 33 2 33 1 66 3333333 4 22 2 77777 4444 6666666 99999999 999 3 22
lowQualScore : .. . . . . ............. .... . . .... .. . .......................... . . . . ....... .. . .. ... .. ... . ................................... . .......... .... . . ....... . .. . . ... . .... ..... . ... . . . . ..................... ........ . ....... . .. . .. . ........ .... ... . . . . . .................... . . ....... .. . . .. ............ .. ................. . . . .. .... .. ..... ............................................................................ . . . . ...... . . .. . ........ .. . . ........ . ..... ... ........... .. . .. . .. ....... . .. . ..... .... ....... ........ ... . ..
lowQualScore : 00 3 6 6 6 6666666666666 7777 6 0 5555 66 7 22222222222222222222222222 4 4 9 6 2222222 11 1 44 666 55 888 1 11111111111111111111111111111111111 1 9999999999 9999 4 9 4444444 6 11 7 4 888 4 1111 77777 4 222 6 4 4 4 666666666666666666666 77777777 9 6666666 9 11 0 55 0 55555555 2222 000 5 6 7 6 2 55555555555555555555 6 6 0000000 22 1 8 66 777777777777 99 44444444444444444 1 2 1 22 6666 88 11111 4444444444444444444444444444444444444444444444444444444444444444444444444444 0 4 6 0 999999 3 3 88 1 22222222 44 0 0 55555555 4 11111 111 22222222222 22 4 11 2 33 5555555 7 99 1 44444 5555 8888888 00000000 000 8 66
consensus : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---A-TT--ATTAG-TT-CGAT-TGATTGCTCAAAGATCGAN------TAAGCT--CGAAGAT-TTTGT-CAAACCATTG---TTGTACATATAT-----GATTAGGTA-TTAAAACGACAATAT---GACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC-CTTTTC---ATTT-CTT---AGGAGC-TG--GAAAA-TAA-C-ATTTTCTNGCCATTTTTACGACG-AATAAA-ATTCTTA-CGT----A---AT--C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TT--NA-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TTN-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-TACAC------AT----ACTA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NT--------------TA-AC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATACTA------A-----T-TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGATAAT-----TA-AC-T-CGTTA-TAAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGA---TAA----------CT--AA-CTCGTTATAA--CGAGTTA--ATTTTTTT--TTATTTTTT-TT--T-T-----TTT----T-------TC----A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
Reference ( family-375 ) : NNATTCGAAATCTTAAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTNTTC---GTCCT--TC-T---C---ACGGGTCCA---AATT--ATTAG-TT-CAAT-TGATTGCTCAAAGATCGAN------TAAGCT--CGAAGAT-TTTGT-CAAACCATTG---TTGTACATATAT-----GACTAGGTA-TTAAAACGATAATAT---GACGATGGAA-AAT---CAGTACTTTT----GTTG-AATAAANGAA-------ATANATC--GTCGC-CTTTTC---ATTT-CTT---AGGAGC-TA--GAAAA-TAA-C-ATTTTCTNGCCATTTTTACGACG-AATAAA-ATTCTTA-CGT----A---AT--C---G----TCAT-----A--AAAAAATCATGTAATTTGGGGAC-TT--NA-G-AATTTCNAAT--TGTT-TGTTT--AAA-T--------TTN-G-AA---AGAACAACCCCTTAACGTTTT-CATAG-TACAC------AT----ACTA-AC-TCGTTAT-------A--ACGAGATAATTAATTC--GT--T----AT---AACG--AGATA-NT--------------TA-AC-TCGT-TAT--AACGAGATANT--TAACTCGTTA-----TAACGAGATACTA------A-----T-TA---ACTCGTCGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGTTAT-AACGAGATANT-----TA-AC-T-CGTTA-TAAC--G-----AGAT--ANT-AA--------CTCGTTAT-A--A--CGAGA---TAA----------CT--AA-CTCGTTATAA--CGAGTTA--ATTTTTTT--TTATTTTTT-TT--T-T-----TTT----T-------TC----A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|1 : TTTGAAATCTTAAA--TTGT-AAGG-GG-GAG------------TG----GGTCAACGAGTTTTT---GTCCT--TC-T---C---A-------------TT---TCAG-TT-C--TGTGATTGC-CAAAGATCGAG------TAAGCT--TGAAGAT----------------G---TTGTACATAT-----------------TT------------T---GACAATGGAACAATATTCAGTACTTTT----GTTG-AATAAAGAAATCTAATTATAGATC--GTCGC-CTTTTC---ATTT-TCT---TTGAGC-TGCGGAAAA-TAA-C-ATTTTCTAGCCATTTTTACGACA-AATAAATAATCTTA-CTT----A---ATG-C---GTTTATCAT-----A--AGAAAATAATGTAATTTGGGGAC-TTCCAA-G-AATTTC--ATTATGTTCTGTTT--AAA-T--------TTT-C-AATAGAAAAAAACCCTTTAACGTTTT-CATA
gi|12 : taaatcattacaaagacgtatcttacggaacctcttgttccttgaaatctttaaatcaagtgtagtgcaaatttagaattacatgtacttaaggaataaaagaaaaatcataagtaaacgttacaagaaactgaaaatgatttaatctagattttttcaagtttataaactccgtgatattttgtagaaatacatgaaatataaatcacaatatttgaataccttttgtcgtttggtattggtcaacagaaagaagctactcttgtcttagtcagcccgcatttacatttataacagagataaaatattttttgtaattgaaggctataactgaaaacgaagtataatgccagtaataattttcttgccagacaaatatctgctgtatgtacatggttatataccttcaatgaatggttgatcatttattggtgaattgacaaagcagttcgcgtacagtgtactactgttttttcaaagtgagagtgggtggcggcgcgcagtcttacgagaagtgtgatgttaaaattgtccataatactcgacaggcaaaatacaagagaaattgtaatatctaagtaaggctaaacttcaacatcctggacagtgttggaaaggggagggggggggggggggaacaaaaaagccacaaaaaactagaaaatctttatttactcgaacGCT--CGAAGAT-TTTGT-CAAACAATTG---TTGTACAT---------GACTAG----TTAA--CGATAATATTTTGACAATGGAA-GAT---CAGTACTCTT----GTTG-AATATTAGAA-------ATAAATC--GTCAC-CTTTTC---ATTT-CTT---AGGAGC-TG--GAAA--TAA-C--------------TTGTACGACG-AATAAA-ATTCTTA-CGT----A---AT--CTTCA----TCAT-----A--AAAAAATC--GTATTTTGGGGAT-TT--AAAG-AATTTCAAAT--TGTT-TGTTT--AAA-T--------TTTTA-AA---AAAACGACCCCTTAACGCTTT-CATAG------------AT----ACTA-AC-TCGTTAT-------A--TCGAGATACTTAAGTT--GT--T----AT---AACG--AGATA-AT--------------TA-AT-TCGT-TAT--AACGAGATATA--TAAC
gi|13 : ---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAA-TT-TGAT-TGATCGATCAAATATCGAC------TTAGCT--C-AACAT-TTTGT-GAAACCATCG---TTGCACATACAT-----GATTAGGTA-TTAAAACGACAAGATACGGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC-CTTTTC---ATTT-CTT---AAGAGC-TA--GAAAAATAA-C-ATTTTCTTTTCATTTTTGTCACG-AATAAA-ATTCTTA-CGT----G---AT--C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATG--CA-G-AATTTCTAAT--TGTTATCTTTA-AAA-T--------TTG-G-AG---AGAAC
gi|14 : T---CAGTACTTTT----TTTTTAATAAAAGAA-------ATAGATC--GTCGC-CTTTTC---ATTT-CTT---TGGAGC-TG--GAAAA-TAA-T-ATTTTCTAGCCATTTTTACGACG-AATAAA-TTTCTTA-CCT----A---AT--C---G----TTATCATTAA--AAAAAATCATGTAATTTGGGGAC-TT--CA---AGTTTCAAAT--TGTTCTGTTT--AAA-T--------TTT-C-AAT--AGAAAAACCCTTAAACGTTTT-C------ACAC------AC----ACTA-AC-TCGTTAT-------A--ACGAGATAATTAA
gi|16 : CG--AGATA-AC--------------TATACCTTGT-TCG--AAAGAGAGA------ACTCGTTA-----TAAAGAGATACTA------G-----T-TA---ACGCTT--TC-A-----------------------------------------AAC-TCGTCAT-TTC---ACATT-----TA-A-------------------------T--ACT-AA--------CTCGTTTC-A--A--CGAGA----------------CTCAAG-CTCATTATAA--CGGGTTA--ATATT-------ATTTGTT-CT--TAC-----TTT----T-------TC----A---AAAA--TGAGTCCA-C--CCGGCTTTCGTA
gi|17 : gACGAGATAAA--TAACTCTTTA-----GAATGAGATACTA------A-------------CTCGTTTTG-AT-----G-AGAT------------------------C-TA-AAC-TCATTAT-AACGAGATAAT-----TA-AT-T-CATTA----C--G-----AGAT--ATT-AA--------CTGGTTAA-A--A--CGAGA---AAA----------CT--AA-ATCGCTAGAA--CG-TTTA--ATgaaa
gi|18 : --AGATA-GC--------------AA-AC-TCGA-TAT--AACGA-AGGTT--TAACT--TTAACTATTAACTTAATATTAGAAAATA-----TCTA---ACTCGT---T-A--A-C-C-AGAT------------------------AACT-AAA-TCGCTAT-AACGATATGAT-----TA-GC-C-CATTA-TAAC--G-----ATAT--AATTAA--------TTCCTTAT-A--A--CGAGA---TAA----------TT--AA-TTCATTATAA--CGcgaagtacttaatgtactgataaccggtactgtttaga
gi|19 : -TGTTT--AAA-T--------TTT-GGAA---AGAACG--CCCCTAACGTTTT-AAAAG------------AT----ACTA-AC-CCGTT-T-------A--TCCAGATAATTAAATT--GTTAT----AT---AACG--AGATA-C---------------TA-AC-TCGT-TATAAAACGAGTTATT--
gi|19 : CGTTTT-AA-AAGATACT------A-AC-C-CGTT--TATC--C-----AGAT--AATTAA--------ATTGTTAT-ATAA--CGAGA---TA-----------CT--AA-CTCGTTATAAAACGAGTTATTATTTTTTT--TT-TTTATT-ATCAT-T-----TTT----T-------T----------AA---TGAGCCCA-G--CCGGCTTTCGTAattttttttttttattatcatttttttaatgagcccagccggctttcgtaa
gi|2 : tgtttaaattttggaaagaacgcccctaaACCTTAAA--TTGT-AAGG-GG-GGGGGGGCGGGATGGTGCAGTGGT-AACGA-TCTGT---GTCCT--TC-T---C---A-------------TT---TTAGGTTGCAGTGTGATTGCTCAAG---CGAG------CATGCAGACGTAAGC-TTTG---AAG--ATT--------ACAGGTAT-------TTTGGGA-CTGGAAC---AATAT----------------T---CAGTACTTTT----GTTG-AATAAA-GAA-------ATAGATC--ATCGC-C-TTTC---ATTTACTTGTGAGGAGCGTG--GAAAA-TAACC-ATTTGTGAGCCATTAGTACGACG-AAGAAA-CTTCAAT-CGT----T---AT--C---G------AT-----C--AAAAAATCATG-AATTTAGCGAC-TT--CT-C-TATTTCAAAT--TGTT-TCTTTTAAAA-TATGTTCAATTA-G-AA---A-AAGA--CCTTTAACGTTTC-------TAC-C------AC----ACTACACATCGTTATAACCGTAA--ACAAGATAATTAAT----GTA-T----GT---AACGCAGGATA-AT--------------TA-ACATCGTGTAT--AAC-AGATAAT--TAACTCG-TA-----TTGCGGGA----A------A-----T-TA-----TCAT-GTTCAT-A-TAG-AGACATGATGATAGAGGTGCTGGAAACGAATT-AAT-TC--TATAAACGACACAAA-----TATACGTGCGTTA-TAAC--GAGTATAGAT--AGT-AATACGAGATTTCGTTATCA--AGGCGAGA---TAA----------TC--AATCTCGTTATAA--CGAG-TA--ATTTTTAT--Ta
gi|21 : cgtacatgtactattgtgtttcaaagtgaggtgggtggggcgcatcgtttaaaaagttgatttaaatgccataagtatcgacaggcaaaatacaagaaaagtttaatatctaagttaaggctaaaactcaacatccgtgagaaaaagatgggggcaaagagcatcagaaaactagcaatctttactgcgaactgttgaggC-TCGTTAT-AACG-GATAAT------A-AC-T-CGTTAATAACCCG-----AGATTAAGT-AA--------CTAGTTAT-AT-AT-CGA-A---TA-----------CT--AA-CTCGTTA-AA--CGAGTTA--ATTTTTTG--TAAATTTTT-T---------------------------C----A---AAAAAATGAGCTCA-G--CAGGCTTTCGTAa
gi|22 : ATTTGAAATTTTAAA--TTGT-AAGG-GG-AAG------------TG----GGT-AACGAGTTTTT---GTCCT--TC-T---C---Agttacatgtatgt
gi|23 : gtaaggctaaacttcaacatcctggaaaagtgtggaagggggggggggagagaacacgtaaactagacatctttactcaaATAAC-----TA-CC-T--GTAA-TAAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGA---TGA----------AT--AA-CTGTTTAT--------TTA--TTTATTTT--TTATTTTTT-TT--T-T-----TTT----TGTATTCTTC----A---AAA---TGAGCCCA-T--CTAGCTTCCt
gi|24 : ttcATAAC-----TA-CC-T--GTAA-TAAC--A-----TGAT--AAT-AA--------CTCGTTAT-A--T--GGCGA---TGA----------AT--AA-CT-GTT-TA-------TTT--ATTTATTT--TTATTTTTT-TT--T-T-----TTTATTCT-------TC----A---AAA---TGAGCCCA-T--CTAGCTTCCta
gi|25 : ttcGAAATCTTAAA--TTGT-AAGG-G------------------G----GGT-AACGAGTTTTT---GTCAT--TC-T---C---Ata
gi|26 : aaggctaaacaacagtgtgtggaaaggggggggggggcacaaaaacctagaaatctttactcgaactctTTCGAGATCTTAAA--TCAT-GAGG-GG-GAG------------GG----ACT-AACAAGACTTC---ATCCT--TC-TCTAC---ACGGGTCCA---ATTC--ATTAtt
gi|27 : ggcacaaaacataaattataagacgttttcactcaaatTTA-TAAC--G-----ATAT--ATT-AA--------TTCCTTAG-A--C--CGAAA---TAATAAGCTCGCTTT--AA-CTCGTTATAA--CGAGCTG--A---------------TTT-TT--C-T-----CTC----T-------TC----AAATAAA---TAAGCCAA-AGTCCGGCCTTCGT
gi|28 : -------A--ATGAGTTAGC-AGTTC--GT--T----AA---AATG--AGATA-C---------------TA-AC-TCGT-TTT--AACGAGAC-TC--TATGTCGCAA-----TAACGAAATA------------------------TTGTTATT-AT-G-C-G-ACAT------------------------t
gi|29 : TCGTT-AT-AAC-G-AAAT------------------------AATG-CAC-TTGTTAT-AACGAGACAAT-----TA-AA-T-CGTTA-TATC--T-----CGATA-ATT-AA--------CTCTTTAC-A--A--CGAGA---GAA----------CT--AA-CCCGTTATAA--CGAtttttgactgaaatgtgaga
gi|3 : TTTGAAATCTTAAA--T----GAAG-GG-GAG------------TG----GGT-AACGAGTTTTT---G-CCT--TC-T---C---A-------------TT---TT-G-TT-CAGT-TGATTGCTCAAAGATCGAG------TAAGCT--TGAAGATGTTTGA-CAaata
gi|32 : tcattacaaagacgtatcttacggaaccgttataggaccatctcttgttcctgaaatctttaaatcaagtgtagcagtttagaattacatgtactttagaaataaaagaaaaatgataagtaacgttacaatatactgaaaatgtattaatatagatttttccaagtttataaactcgatttttgtagaaatacatgtaaaataaatcaccacagtacattactttacagatgtttgtaagtttatatttaactcatctacatatataattatttgaatcaaatctgctcttgtcgtaatcagcccgcatttacatttataaatagatacatattttttgtaattgaaggcataaactgaaaatgaagtacatgcagtaataattttcttttccagacaaatatctgttgaatggttgatcatatattggtgaattgacattgtacggtcgcgtacatgtactactgtttttcaaagtgaggtgggtggggggtgcagtcttatgaaaagttgagtttacaattgtccataatactcgacaggacaggcaaaatataagagaaatttttatctaactaaggctaaacttcaacatcctggaaagtgtgggggcaaagagcacaaaacactcgagatctttactcgaacT-AA--------CTCGTTAT-A--A--CGAGA---TAA----------TT--AT-CCCGTTATAA--CGAGTT----TTTTTTT--TTG--TTTT-TT--T-T-----TCC----T-------CCA---A---AAA---TGAGCCAA-G--CCGGCTTTCGTAtatgttttgacaatggaacaattttcgttttaaattttcaatataaaa
gi|33 : CTA-TC-TCGTTAT-------ATTGCGAG-TAATTAATTC--AG--T----AA---AACG--AAATATAT--------------TA-CT-TCAT-TAT--ACCAATATAAT--TCTTTCCTTA-----TAATGAGGTA
gi|34 : --------CTCGTTAT-A--A--CGAGA---TAA----------CT--AG-CTTGTTATAA--CGAGTTA--ATTTTTTT--TTA-----------A-T-----TTT----T-------CCA---A---AAA---TGAGCCCA-G--CTGGCTTTCGTAa
gi|35 : atAGATAGT---ATCTCGTTA-----AATCGAGATTATA------A-----T-TACTAGCTCGTCATT-AT-A-A-GGAGAT------------------------A--T-GATGTCGTTAT-AACGAGATGTT-----aaa
gi|36 : AAATCTTAAA--TTGT-AAGGTGGTGGG------------TG----GG--GGCTGGTA--C---GTCCTACCC-TG--C---ATGGGTTCA---AATC--ACCAG-TT-TAA---AATTGCagtga
gi|37 : aA--------CTTGTTGC-A--A--CGAGA---TA-----------CT--AA-CTCGTTATAA--TGAGTTA--A-----------------T-TC--T-T-----TCT----T-------CCA---A---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|39 : GTTATAA--CGTGTTA--ACTTTTTTTGTTATTTTTTGCT--T-T-----TTT----T-------TC---------AA---TGAGCCCATG--CGGGCTTTCGTc
gi|4 : ATTTAAGATTTTAAAAATCGTTAAGT-GG-AAA------------GG----GGT-AATGAGCGTAT---GTCCT--TTATG--C---ACGGGTCCAGTAAATTGAATTAA-TT-TGAT-TGATCGATCAAATATCGAC------TTAGCT--C-AACAT-TTTGT-GAAACCATCG---TTGCACATACAT-----GATTAGGTA-TTAAAACGACAAGATACGGATGATGGAA-AAT---CAGTATTTTTCAGTGTTG-AATAAATAAA-------ATATATC--GTCAC-CTTTTC---ATTT-CTT---AAGAGC-TA--GAAAA-TAA-C-ATTTTCTTTTCATTTTTGTCACG-AATAAA-ATTCTTA-CGT--------AT--C---G----TCAT-----C--AGCAAATCATGTAATTTAGGGATATG--CA-G-AATTTCTAAT--TGTTATCTTT--AAA-A--------TTG-G-AG---AGAACACACCTTTAACGTCTTACATAATTACACTTTGGTATAATAACTA-AC-TC-TTAT-------A--ACGAGGCAATTAATTTCAGT--T----CT---AACG--AGATA-CT--------------TA-GA-TCGT-TAT--AACGAGATTTT--TAAGTCG--A-----TAACGAGATGCTAC-----A-----TGTA---ATTTGTTGTT-AT-A-C-G-AGAT------------------------AATT-AAC-TCGATA--AACGAGGTACTGCAAGTA-AC-T-CGTTA-TAAT--G-----AGAT--ACT-AA--------CTCGTTGT-A--A--CGAGA---TAA----------CC--AA-ATAGTTATAA--CGTGTTA--ACTTTTTTTGTTATTTTTTGCT--T-T-----TTT----T-------TC---------AA---TGAGCCCATG--CGGGCTTTCGTA
gi|40 : gtAACGTTTT-CATA----CAC------CT------TA-AC-TCGTTAT-------A--ACAAGGTAAGCAATTC--GT--T----AT---AACG--AGATA-TT--------------
gi|42 : ATTTTTT-TT--T-TA----TTT----T-------TCTCCAA---AAA---TGAGCCCA-G--CCGGCTTTCGTA
gi|43 : -AA--------ATCGTTGT-A--A--CGAGA---TAA----------CT--AA-CTCGTTATAA--caca
gi|43 : -------A--ACAAAAAAA--AAATC--GT--T----GT---AACG--AGATA-AC--------------TA-AC-TCGT-TAT--AAtttttttgtttttt
gi|45 : TTT-TT--T-A-----TTT----T-------TCCA--A---AAA---TTAGCCCA-G--CCGGCTTTCGTAtttt
gi|46 : TT-TT--T-T-----TTC----T-------TCCA--A---AAA---TGAGCCCA-G--TCGGCTTTCGTAcaca
gi|47 : ----A---AAA---TGAGCCCA-G--CCGGCTTTga
gi|48 : ccaT-TT--T-T-----TTT----T-------TC----A---AAAA--TGAGCTCA-G--CCGGCTTTCtaattcgtaagtatact
gi|49 : --T-T-----TTT----T-------TC----A---AAAA--TGAGCTCA-G--ACGGCTTTCGTct
gi|5 : ACTTGAAATCTTAA---TTGT-AAGG-GG-GAA-------------G----GGT-A-CGAGTTTTTATTGTCCT--TC-T---C---A-------------TT---TTAG-TG-CAGT-TGATTGCTC-AAGATCGA-------TAAG-T--TGAAGA--GCTGTACATACT-TTGAAAATGTACA-ATAT----------AGTATTTTGAATGA----AT---GATGTCGT-----T---CATT--TTTT----G--G-AGCGGATACT-------ATATTTCTAGTCACACTTTTTTCAATTT-TTT---TGGTGC--G--GAAAA-TAA-TAATTTTTAGGCCATTTTTACGACGAAAGAAA-AATCTTACCGCTTAAA---ATGAT---A----TCAT-----A--AAAAATTCA-GTAATTTGGGGAC-TC--AA-G-AATTTTTAAA--TTCC-TGTTA--AAA-T--------TTT-G-AA---AGAA-AACCA--TAAC--TTT-CA----TACAC-------------TTA-AC-TCGTTAT-------A-----AGATAATTAATTC--GT--TCAGCATATAAACG--AGATA-A---------------TA-AC-T-GT-TAT--AAAGAGATAC---TAAC----TG-----TAATAAGATAC----------------GA---ACACG----T-ATAA-C-G--GA-------------------------AATT-AAC-TCG-TAT-AA
gi|50 : aaagctaaacttctaacatctggaaagtaatgtggaaggggtgggggggggggggggcacaaaaaaaaaacgtaaacacatttacga----A---AAA---TGAGCCCA-G--CCGGCTTTCCTAacagtaattttttttttcaaaaatg
gi|51 : ttccaT--T-T-----TTT----T-------TCG---A---AAA---TGAGCTCA-G--CCGGCTTTCaga
gi|7 : TTCGAAGTCTTCAA--TCGT-AAGG-GG-GAG------------TG----GGT-AACGAGTGTTT---GTCCT--TC-T---C---A--------------T--ATTAG-TT-CAAT-TGATTGCTCAAAGATCGAA------TAAGCT--TGAAGAT-TTTGT-CAAACCATTG---TTGTACATAT-----------------TT------------T---GACAATGGAA-CAT---CAGTACTTTT----GTTG-AATAA-------------------------C-CTTTTC---AT--------------------------------ATT-TCTTGCCATTTTTACGACG-AATGAA-TTTCTTA-CGT----ATTGGT--T---A----TCAT-----A--AAAAAATCATGCAATTTGGGGGT-TT--TA--------------------TGTTT--AAATT--------TTA-G-AA---AGAACAACCCCTTAACGTTTT-CATAG------------AT----ACTA-AC-TCGTTAT-------A--ACGAGATAATTAACTC--GT--T----AT---ACCG--AGATA-C---------------TA-AC-CCGT-TAT--AACGAGTTAAT--T
gi|7 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacAGATACT------A-AC-T-CGTTA-TAAC--G-----AGAT--AATTAA--------CTCGTTAT-A--C--CGAGA---TA-----------CT--AA-CCCGTTATAA--CGAGTTA--ATTTTTT-----AATTTTT-TT--T-T-----TTT----T-------CA----A---AAA---TGAGCCCA-G--CCGGCTTTCGTAttttaatttttttttttttcaaaaatgagcccagccggctttcgta
gi|8 : aaaagaatagaaatttaatatctaaataaggctaaacttcaacatcctggaaagtgtgtggaaaaagggaggggtggggggcaaaagtgcacaaaaaactagaagtttttgctcgaacttcgaagtcttcaatcgtaagggggagtgggtaacgagtgtttgtccttctcatattagttcaattgattgctcaaagatcgaataagcttgaagattttgtcaaaccattgttgtacatattttgacaatggaacatcagtacttttgttgaataaccttttcatatttcttgccatttttacgacgaatgaatttcttacgtattggttatcataaaaaaatcatgcaatttgggggttttatgtttaaattttagaaagaacaaccccttaacgttttcatTTCAAAATCTTAAA--TCGT-AAGG-GT-GAG------------TA----GGT-GACGAGTGTTC---GTCCT--TC-T---CTCCACGGGTCCA---ATAT--ATCAG-TT-CAAC-TGATTGCCCAAATATCGATGTAACTTGAAAT--CGAAGAT-ATTGT-CCAACAGGTG---TTGTATATATGTAAATTGACTAGATA-TCAAACC-ATAATTT---GACAATG-------------TATTTTT----GTTG-AATAAAAGAA-------A-ATATC--GCTAC-CTTTTC---ATTT-GTT---AGGAGC-TA--GAAAA-TAA-C-ATTTTCTTGTTATATTTATGACG-ACTAGA-ATTCTTA-CGT----A---AT--C---G----TCATC----ATCAAAAAATTATGTAACTAGGGGAT-TT--AA-ATAATTTCTAAG--AGTT-TTGTG--AAA-T--------TTG-A-AA---AGAACAACCCCTTAATGTTTT-CATAG--ATAC------AA----GCTA-AC-TAGTTAT-------A--ACGAGATAATT-----------------T---ACCG--AGATA-C---------------TG-AC-TCGT-TTT--AAAGAGATATTAAAAATTCCTTA-----TAACGATAT
gi|9 : aaacAACGTTTT-CATAG-TAC----------------TG-----CGTTAT-------A--ACGAGTTCTTTATCTC--GT--T----CT---AACG--AGATA-CTTCTAACGAAATAACTA-AC-TCGT-TAT--AACGAGGTAGA--TAACTTGTTA-----TAATGAAATTCTA------GTAATTT-TA---AAT--TCGTT-GT-A-A-C-AAAT------------------------TATTCAAT-TCGTTAT-AATTATATAAT-----TA-AC-T-C--TA-TAAC--G-----AGATA-ATT-AA--------CTTGTTAT-A--A--CGAGATGTTAA----------CT-----CTCGTTATAC--CTAGTTAG-ATATTTTT--TTTTTTTAT-AC--T-TAGGCCTCT----T-------TCA---A---AAA---CGAGCCCA-G--CCAACTTTCGCA
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CCAATAATTACAATGCTATTACGGACGTTAAGGACCTCTTGATCTGAAATTGTTAAATCAGTGTAGCAGTTAAACTACATGTTAAGAATAAAAGAAACTATAATCAAGAAACGAAAATATATTTATCTAGTTTTTCCAAGTTACTAAATCCGTGATTATTTTTTGTAGAAATACAGTATAACCATGTGAATAAATCATCAGTACAACTTTGCAGTTTTTGAGTTATATATATAATCATTAATGTATATATTTGAAGACATTTTGTCGGTATTGTCAACGAAAGAAACAAAAGCGCTCTTCATATCGCCCGCATTTAATTATTCTTATAAAAGAGTTTTTTGTAATTGAAGGTTAAACTGAAAAGAAGTACATGGCAATAATAATTTCTTTGCCAACAATATGCTGTTAATGTATTACTTCATGAATGTTGATCATTTATGGGGTGAATGACAAGATCATTCGCGTAAGCGCTAGTTTCCAACAGTGAGGTGTGGGCGCAGTCTTATGAGATAAGTTTACAATTCTAGTATCGACAGGCAAAAACAAAG
Unaligned ( gi|10 ): AAATCAATACAAAGATGTATCTTACGGAACCGTTATAGGACGTTCTCTTGTTCCTGAAACCTTTAAATCAAGTGTAGCAATTGTAGAATTACATGTACTTACTGAAAATGTTTTAATCTATATTTTTACAAGTTTATAAACTTCATAATTATTTTGTGAAAATACATATAAACCTTGAAAAATAAATCATCACAGTACATTACTTTGCAGATGTTTGTGAGTTTATATACAACTCACCTACATGTATAATATTTGAATGTCTTTTGTCGTGGTATTGGCCAACAGAAAGAAATCAAATCTGCTCTTGTCTTGGTCAGCCCGCATTTACATTTATAACAGAGATACTTTTTTGTAAATAAAGGCATAAACTGAA
Unaligned ( gi|11 ): TATACTATTTGAAGACCTTTTGTCGTGGTATTGGTCAACAGAAAGAAATCAAAGCTGCTCTTTTCATAGTCAGCCCCGCATTTACATTATTTTATAACAGAGATTTTTTTGTAATTGAAGGCTTAAACTGAAAACGAAGTACATGCAATAATAATTTTCTTTGCCAGACAAATACCTGCTGTTACATGGTATATACCTTCATGAATGGTTGATCATTTATTGGGGTGAATTGACAAAGCATTCGCGTACATGCGCTACTGTTTTCCAAAGTGAGGTGGGTGGGGGCGCAGTCTTATGAGAAGTTGAGTTTACAATTGTCCTTAGTACTCGACAGGCAAAATACAAGAGAAATGT
Unaligned ( gi|15 ): TCAATTACATAACAGACGTAATCACAGGACACCGTTATAGCCATCTCTGTCCTGAAAAATCTTTAATACAAGGTGCAGTTTATAATACATGACTATTTACGAAAATAAAAGGAGAAATCATTAAGTAACGCTTACAAAAAACTGAAAATGTGTTTAAATTGAATATCTTGCAAGTTATAACTCGTGATTATTTTGTAAAT
Unaligned ( gi|20 ): TAAATCATTACAAATACGTATCTTACGGAACTGTTATAGGACCATCTCTTGTTCCTGAAATCTTTAAATCAAGTGTAGCAGTTTAGAATTACATGTACTTTAGAAATAAAAGAAAAATCATAAGTAACGTTACAATAAACTGAAAATGTTTTAATCTAGAT
Unaligned ( gi|30 ): TACAATGTCATTTTTTTTTTATCAGACAGCTATTTTTCTACTACATGGTATATCTTCACGAATGATTGTCATTAATTGATGAATTGACGTCAAGG
Unaligned ( gi|31 ): ATGTAAAATAAATCACCGACAGTACACTTGATTACGATGTTTGTAAGTTTATATTTAACTCATTCTACAGACATAGTATAATATTTGAATACC
Unaligned ( gi|38 ): AAACATCATACTCAAGTTTGAAATTATTCAATTTAAGGGGAGATGCATAACTGATGCTTCTGCCCTTTCATT
Unaligned ( gi|41 ): CAACTCATCTACATGTATAATACTTAAATATATGTTGTCGTGGTAAAAAAAAAAAAAACAA
Unaligned ( gi|44 ): ACTTCAACATCCTGGAAAGTGTGGGGGCAAATAGCACCAAAAAAACC
Unaligned ( gi|52 ): AATATTTTTAACATAGACACATTTCTATATTA