lowQualScore : 1 6666 111 111111 11111 33 444444444 33 1 44 1 11111 11 11111111111111111 222222 22222 1 111 111111 1111 111 111 111 1 11 111 11 2222 11111111 11111 222 222222 222222 1111111 1 111 111 11 1 3333333 2222 444444444 111 666666666666666666666666666666666666666 333333333333 111 2222 1 1 1111 11 222222 22222 3333333 11 111 111 111 22222222 1 11 111 1 55555555555555555555555 444444 1111111 222222 22 111 66666666666666666666666666666666 33333333333 11111 22 111111
lowQualScore : 0 6666 2 111 222 1 99 999999 66666 0 77 5 22 3 5 777777777 77 5 99 6 22 666 6 1 77 888 77 55 5 66 4 2 4 4 11111 4 55 9999 9999 4 4 66 4 77777777777777777 4 888888 4 44444 8 4 4 0 0 6 6 6 111 000000 77 777 5 5 5 5 77 2222 5 77 5 5 888 3 1 3 6 111 1 6 6 111 6 888 3 6 88 6 111 6 6 99 55 0000 6 55555555 66666 000 6 666 6 99 6 555555 99 6 7 666 777777 6 2222222 6 99 3 000 6 777 8 11 8 0 8 6666666 8 8 8 1111 6 8 8 8 333333333 0 444 8888 8 8 6 8 111111111111111111111111111111111111111 555555555555 6 6 000 99 6 9 2222 6 6 6 99 6 2 5 99 8 3333 88 8 8 0 11 8 0 333333 66 00000 8 7777777 8 8 11 88 8 888 8 444 8 111 2 8 888 11111111 5 8 3 8 8 88 0 11 8 666 8 6 8 8 8 8 77777777777777777777777 333333 77 5 77 3333333 000000 5 5 77 5 5 99 22 6 0 111 88888888888888888888888888888888 22222222222 0 44444 6 6 6 00 99 999999 6 3
lowQualScore : . .... . ... ... . .. ...... ..... . .. . .. . . ......... .. . .. . .. ... . . .. ... .. .. . .. . . . . ..... . .. .... .... . . .. . ................. . ...... . ..... . . . . . . . . ... ...... .. ... . . . . .. .... . .. . . ... . . . . ... . . . ... . ... . . .. . ... . . .. .. .... . ........ ..... ... . ... . .. . ...... .. . . ... ...... . ....... . .. . ... . ... . .. . . . ....... . . . .... . . . . ......... . ... .... . . . . ....................................... ............ . . ... .. . . .... . . . .. . . . .. . .... .. . . . .. . . ...... .. ..... . ....... . . .. .. . ... . ... . ... . . ... ........ . . . . . .. . .. . ... . . . . . . ....................... ...... .. . .. ....... ...... . . .. . . .. .. . . ... ................................ ........... . ..... . . . .. .. ...... . .
lowQualScore : 0 2222 0 777 777 0 22 000000 00000 6 99 7 99 0 7 999999999 99 7 22 7 99 888 7 4 99 666 99 00 0 11 4 0 4 4 33333 4 00 4444 4444 4 4 11 4 00000000000000000 4 333333 4 66666 9 4 0 8 6 7 7 7 777 999999 99 333 7 7 7 7 99 1111 7 99 7 7 222 2 7 7 7 777 0 7 7 777 7 333 3 7 33 7 777 7 7 22 00 8888 7 22222222 77777 000 7 888 7 22 7 888888 22 7 3 888 888888 7 5555555 7 22 3 888 7 444 0 00 0 6 0 0000000 0 0 0 4444 0 0 0 0 444444444 8 000 4444 0 0 0 0 222222222222222222222222222222222222222 000000000000 7 7 222 22 7 8 3333 7 7 7 22 7 3 5 22 0 0000 88 0 0 8 00 0 8 000000 44 00000 0 2222222 0 0 00 88 0 888 0 000 0 888 8 0 000 00000000 0 0 2 0 0 88 8 00 0 888 0 0 0 0 0 0 88888888888888888888888 555555 99 7 99 1111111 333333 7 7 11 7 7 22 33 7 8 777 77777777777777777777777777777777 55555555555 8 33333 7 7 7 22 22 222222 7 7
consensus : AGAAGGGATT-CCATACAG-ATA---TCTGACCTNCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATAA-CAAATGATTT-TGGTG--------T--AAAATTGCC-TTTCACTG--T-GTATGAGGGT-CTTAAACA-T-T-CGATTATATGTAC-ATT--CCC--TGAAGT--AAAACACATGG--ATCCC-TAT-TTT-GTT----AAAAGACC-TT--C----AA----AA-TTTGGA-TT--T-ATA-------A----A----AA-TTTTA------CTT-GAAG--C--AAAA-AGGGAT-CCAGGAGAATTTAT-GA-TT-G---TT--T-C-T--CT-C-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTG-TGAAAAAAAA-TGGGCTGTGGAATT-GT---CTCTTCA-AGA-CCA---ATT-TA-A-T-T-GG--AAACGAA---TGTTT-AAAAA-CT--TAAAA-TCCC----TTACA-AAG--GA----TATAT---C-ACT--ATTTTG-G-T-T-TCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTA-TTT---TT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-TG-TA--C-AATAT-GCACA-C-TTAGAACC-TG-AAA-CA-TTGTTA-CA-CTTATTTT-T-TG---AATGTAATGT---AA-TT-A-ACA-GAATCTGGTCTG-CATTAGAGGA--CTGG-AT---TCA----------------------ACAGAAA----------T-CT-GGA-AAGG--TAG--TC-AAATTTACTTCNA-GTGTT-GT-TTTA-C--TTGGTACC-CTAGATGAAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTA-TTT---ATATT-GATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-T-CCTTT----G---AAAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTCC-C-GT-CTG-AAAATAATGTAT--T--T----------------TATTATTAT-TTAAGAAATATTATT--AT-TATTA--GT----A--TTTA----TTTATTTA-TTTTGCCT-CAC-CCC-ACA-GTATA--TATGTATAAAAGTCTA-TCAGTATGT---ATG-----T--------TGTATG------TA-T--CTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAGAAAA--AA------CAA-TAAAAAAAAAAAANAAAAAAAAAAAAGA
Reference ( gi|2 ) : AGAAGGGATT-CCATA----ACA---TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA--CAAATGATTT-TGGT---------T--AAAATTGCC-TTTCACTG--T-GTATGAGGG--CTTAAACA-T-T-CGATTATATGTAC-ATT--CCC--TGAAGT--AA--CAAATGG--ATCCC-TAT-TTT-GTT----AAAAGACC-TT--C----AA----AA-TTTGGA-TT--T-ATA-------A----A----AA-TTTTA------CTT-GAAG--C--AAAA-AGGGAT-CCAGGAGAATTTAT-GA-TT-G---TT--T-C-T--CT-C-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTG-TGAAAAAAAAATGGGCTGTGGAATT-GT---CTTTTCA-AGA-CCA---ATT-TA-A-T-T-GG--AAACAAA---TGTTT-AAAAA-CT--TAAAA-TCCC----TTACA-AAG--GA----TATAT---C-ACT--ATTTTG-G-T-T-TCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTA-TTT---TC--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-TG-TA--C-AATAT-GCA-A-C-T-AGAACC-TG-AAA-CA-TTGTTA-CA-CTTATTTT-T-TG---AATGTAATGT---AA-TT-A-ACA-GAATCTGGTCTG-CATTAGAG-A--CTGG-AT---TCA----------------------ACAGAAA----------T-CT-GGA-AAGG--TAG--TC-AAATTTACTTACA-GTGTT-GT-TTTA-C--TTGGTACC-CTAGATAAAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTA-TTT---ATATT-GATAATGTTC-AATCATACA--TCAC-TAA-CTACTATA-AG-ATAG---A-AAAAAAT--TGCACTCAAAT-AGT-T-CTTTT----G---AAAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTA-TCT-C-GT-CTG-AAAATAATGTAT--T--T----------------TATTATTA--T--AGAAATATTATT--AT-TATTA--GT----A--TT-A----TTTATTTA-TTTTGCCT-CA--CCC-ACA-GTATA--TATGCATAAAAGTCTA-TCAGTATGT---ATG-----T--------TGTATG------TA-T--CTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAG-AAA--AA------CAA-TAAAAAAAAAAAAGAAAAAAAAAAAAGATTTAAAC
gi|3 : AGAAGGGATT-CCATACA--ATA---TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAG-GTATAA-CAAATGATTT-TGGTG--------T--AAAATTGCC-TTTCACTG--T-GATTGAGGGT-CTTAAACA-T-T-CGATTATATGTAC-ATT--CC---TGAAGT--AAAACACATG---ATCCC--AT-TTT-GTT----AAAAGACC-TT--C----AA----AA-TTTGGA-TT--TTATA-------A----A----AAATTTTA------CTT-GAGA--C--AAAA---GGAT-CCAG-AGAATTTAT-GA-TT-G---TT--T-C-T--CTTC-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTG-TGAAAAAAAAATGGGC-GTGGAATT-GT---CTTTTCA-AGA-CCA---ATT-TA-A-T-T-GG--AAACAAA---TGTTT-AAAAA-CT--TAAAA-TCCC----TTACA-AAG--GA----TATAT---C-ACT--ATTTTT-G-T-T-TCAACACAGG--AT-TGTA------CATAGAA--T-CTGGG-AGTTAATA-A-AA--CC-TT-A-TTT---TT--CCAAA-A--TA-GTTG--A-AGTCAG-AAA-TG-TA--C-AATAT-GCACA-C-T-AGAACC-TG-AAAACA-T-GTTA-CA-CTTATTTT-T-T-----ATGTAAAGT---AA-TTTA-ACA-GAATCTGGTCGG-CATTAGGG-AG-CTGG-AT---TCA----------------------ACAGAAA----------T-CC-GGA-AAGG--TAG--TC-AAATT-ACTTTCAAGTGTT-GT-TTTA-C--TTGGTACC-CTA-ATGAA-GATAT-GGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTA-TTT----TATTTGATAATGTTC-AATCATACA--TCAC-TAA-CTACTA-A-AG-ATAG---A-AAAAAAT---GCACTCAAAT-AGT-T-CCTTT----G---AAAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTA-CTC-C-GT-CTG-AAAATAATGTA---T--T----------------TATTATTAT-T--AGAAATATTATT--AT-TATTA--GT----A--TT-A-----TTATTTA-TTTTGCCTCCAC-CCC-ACA-GTATA--TATGCATAAAAGTCTATTCAGTATGT---ATGT----T--------TGTATG---------T--CTGTATG---T-------ATGGA-GACAAT-TGC-A-ATAAGAAAA--AA------CAA-TAAAAAAAAAAAAGAAAAAAAAAAAAGA
gi|1 : aAGAAGGGATTTCCATACA--ATA---TC-GACC-GCTTACT--GGTCGA--GGAATTTTTA---TTAAACAT-ATGAGAGTATATACAAAT-ATTT-TGGTCG-------T--AAAATTGCC-TTTCAC-G--T-GTATGGAGGTCCTTAAACAAT-T-CGATTATATGTAC-ATTTCCCC--TGAAGT--AAAACACATGG--ATCCC-TAT-TTTTGTT----AAAAGACC-TT--C----AA----AA-TTTGGA-TTACT-ATGTTTTTTTG----A----AA-TTTTAA-----CTT-GAAGA-CGAAAAA-AGGGA--CCAGGAGAATTTAT-GA-TTTG---TTGTT-C-TGTCT-C-T-CAAAT-A-AAAAC--ATA----AAGC--CGACTGTG-TGAAAATAAA--GGGCTG-GGAATA-AT---CTCTTCA-AGAACCA---ATTCTA-A-T-T-GGGAAAACAA----TGTTT-AAAAAACT--TAAAAATCCC----TTACA-AAG--GA----TATAT---CGACTGAATTTTG-GGT-T-TCA-CACAGGTAAT-TGTAG-----CAGAGAGATTTCTGGG-AGTTAATA-A-ATAGCC-TTTA-TTTGTTTT--CCAAA-A--TA--TTG--ATAGTCAG-AAAGTGGTAATCGAATATTGCACA-C-TTAGAAGC-TGTAAA-CGCTTGTTAGCAGCTTATTTTGT-TGG--AATGTAATGT---AA-TT-A-ACA-GAATCTGGTCTGGCCTTAGAG-GACCTGGGAT---TCA----------------------ACA-AAA----------TGCT-GGATAAGG--TAAGTTC-AAAGTT-CTT-CA-GTGTT-GT-TTTA-CACTTGGTACC-CTAGCTGAAAGAGATTGGC--TTAAATATT-ATT--AATTTTTATTGAGTCAA-GAAATTTATATATCAA--ACCTTCTCTGAAAAGAAAAAAATGTTTTAAAGTA-TTTTAAAT-TT-GATAATGTTCAAATCATACA--TCACTTAA-CTACTATG-AG-ATAG---ATAAAAAAA--TGTACTCAAAT-AGTAT-CCTTT----GAAAAAAAAAGAT--GGAAACA-TGGAAATGTTCTTT-TCC-C--CATAATTCCATAAT-T-GTGATTATTCTCC-GT-CTGAAAAATAATGTAT--T--TATTATTATTAGGAAAATATTATTA--TTAAGAAATATTATT--AT-TAGTAGTGT----A--TT-A----TTTATTTATTTTTGCCT-CAC-CCC-ACC-GTATA--TATGCATAAAA-TCTA-TC
gi|15 : gttaaggagaaatgcctagtctctggatttttccatgtggacaaagcctatttaaagtaatacagctgtagtgtcacacataggtgtcatttggttctgaataaatacgggcaaaaaaatgaaagtgttctctaaatcctttttggataaaacaactctccatatttttcagaatttatgaatatttttgattcatgatgtattgtagaacctttgtggtaccagtcatagaattaaggttcaaaacaagtgtgtttttttataaatctcttaacgaGAAAGGATT-TCATACAGTACAATGTCTGACTTTTTTTTTTAAGTCAA--GGTGTTTTTA---TTG--CTT-ATGAGAGTATA--CAAATTACTTATG-----------T--AAAGGTGCC-CTT
gi|4 : AAGGGATT-CCATAGAA-ATA---T-TGACCTGCTTA----GGTCGAACGGAATTTT-AATATCA--CATCATGAGAGTATA--AAAATGATTT--GGTG--------T--AAAATTGCC-TTTCACTG--TAGTA-GAGGGTCCTTATACA-TGT-CGATTATATGTAC-ATT--CCC--TGAAGT--AAA-CACATGGGAATCCCCTAT-TTT-TGT----AAAAGACT-TTT-C----AA----AAGTTTGGA-TT--T-ATA-------A----A----AA-TTTTA------CTT-GAAGA-C--AAAA-AGGGATTCCAGGAGAATTTATTGA-TT-G---TT--TTC-T--CT-C-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTG-CTGAAAAAAAATGGGCTGTGGAATT-GT---CTCTTCA-AGA-CCA---ATT-TA-A-T-TTGG--AAACAAA---TATTT-AAAAA-CT--TAAA--TCCT----TTACA-AAG--GG----TATAT-----ACG--ATTTTG-G-T-T-TCAACACAGG--ATATGTA------CATAGAA--TT---GG-AGTTA-TA-A-ATACCT-TTTA-TTT---TC--C-AAA-A--TA-GTTG--ATAGTCAG-A---TG-TA--C-A-TAT-GCACA-C-TTAGAACC-TG-AAA-CAGTTGTTA-CA-CTTATTTT-TATG---ATAGTA-TGT---AAATT-A-ACA-GA-TCTGTTCTG-CATTAGAGGA--CTGG-AT---TCA-----------------------CAGAAA----------T-CTTGGA-AAGAGTTAG--TC-AAATTTACTTCAA-GTGTT-GTCTTTA-C--TTGGTACC-CT-GAT-AAAGATATTGGCATTTAAATATTAA-T--AA--TTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTTT---AT-TT-GATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAGAAAA-AAAAAAT--TGTACTCAAAT-AGT-TCCTTCT----G---AAAAAAGATGAGAAAACATTGGAAATG-TCTTTCTCCAG--CATAATT-CATAAT-TGGT-ATTA-TTC-C-GTGCTG-AAAATGATGTAT--TTAT----------------TATTATTATTT--TGAAATATTATT--ATATATTA--GT----AGTTT-A----TTTATTTA-TTTTGCCT-CACCCCC-ACA-GTAT
gi|7 : aagtA---TCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATAA-CAAATGATTT-TGGTG--------T--AAAATTGCC-TTTCACTG--T-GTATGAGGGT-CTTAAACA-T-T-CGATTATATGTCCCATT--CCC--TGAAGT--AAAACACATGG--ATCCC-TAT-TTT-GTT----AAAAGACC-TT--C----AA----AA-TTTGGA-TT--T-ATA-------A----A----AA-TTTTA------CTT-GAAGA-C--AAAA-AGGGAT-CCAGAAG
gi|10 : cactctattccacttatattgaaatcacttacattgaagtaaaaataaatccccagtcacattA---TCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATAAACAAATGATTT-TTGT---------TGTAAAATTGCCCTTTCCATG--T-GTATGAGGGT-CTTAAACA-T-T-CGAT-ATATGTCCCATT--CCC--TGAAGT--AAAACACATGG--ATCCC-TAT-TTT-GTT----AAAAGACC-TTT-C----AA----AA-TTTGGA-TT--T-ATA-------A----A----AA-TTTTA------CTT-GAAGGACA-AAAA-AGGGAT-CCAGAAGtgtcataacttaacca
gi|18 : aaaaataaatccccagtcacattTA--AAT-ATAAAAACATAA-CAAATAAATT-TGATGTACAATACT--AAAATTCCC-TTTCACTGACT-ATATGAGGG--tgtcataacttaacaaa
gi|6 : --CTTAAACA-C-TACAATTATGTGTAC-ATT--TCCCGTGAA-T--AAAACACGTGG--ATCCC-TATATTT-GTTTAAAAAAAAACCCTT--C----AA----AA-TCTGAAATT--T-ATA-------A----A----AA-TTTC-------CTT-GAAG--G--ACAA-AAGGGT-CCAGGAGAATT-AT-GAGTT-G---AT--T-AAT--CC-A-C-CAAA--A-TAA-CTGAGG----A-GC--C-ACTGTG-GGAACAAA----------CGG------T---CTCTTCA-ATA-CCA---ATT-TA-A-TGT-GGGAAAAGAAA----GCTT-AACAA-CT--TAAAA-TCCC----CCACA-AAG---A----TATAT---C-ACT---CTTTG-G-T-T-TTAACACAGG--AT-TGTA------CATAGAA--TTCCGAGCAGTTAATA-GCAT--AGGTTTA-CTT---TT--TCAAA-A--AATGTTG---TAGTCAG-AACCTG-TA--C-AATAT-GCA-AAC-T-AGAACCCTG-AAA-CA-T-GTAA-CA--TTATCAT-T---------GTAATGTCTGAA-AT-ACACATAAATCTGATCTG-CATTAGAGGA--CT-G-ATTTTTCAGAAAAAAAAAAAAAAAAAAAAAACCGAAA------------CT-GTA-AAG---TAG--TC-AAATT-A-TGACAAGTGT--GT-TTTA-C--TTGGT-TC-CGAGATAAA-GATACTGCC--TTAA-TATT-A-CTAAA-TTTTATA-GGTCAAAGAAATGTATATGT-AA--A-CTTCTC------GAAAGAA---T-----CGTA-TT------ATT-GATAATATCC-AATCATGCAATTCAC--AG-TTACTTTG-AGGATAG---A-AGAAAAT--TGTACTCAGAT-AGT-CACTTTTTGAAG---AAGA-AGATG-G-AAACA-TGAAAATG-TCTTT-TCCAAGCCAAAACC-CAAAATGT-GT-ATTATTCC-C-GT-CTG-AAAATGAGTTATTAT--T----------------TATTatct
gi|11 : aaggctATGTAC-AAT--CCG--TGAAGTCAAA--CACCTGG--AACCC-TCC-TCA-ATT----AAAAGACC-TTTCC----AA----CA---TGAA-TT--T-ATT-------A----A----GA-TTTCA------CTTAAAAA--T--AACA-AGGCGT-CCAGAAG-ATC-------TT-G---TT--T-A-T--GT-C-T-CATAT-A-CAG-C--AAA----A-GCTAT-ATTGTATTGAAAAAAAAt
gi|7 : TGG--ATCCC-T-T-TTT-GT------------C-TT--C----AAGTAAAA-TTT-----T--T-ATA-------A----ATCCAAA-TTTTGAAGGT-CTT-TTAA--C--AAAATAGGGAT-CCAcnagagtaggcaattctattt
gi|10 : cactctattccacttatattgaaatcacttacattgaagtaaaaataaatccccagtcacattatctgacgtccttactggtcaacttttataacatatgagagtataacaaatgattttggtgtaaaattgcctttcactgtgtatgagggtcttaaacattcgattatatgtcccattccctgaagtaaaacacaTGG--ATCCC-TTT-TTT-GT-----------CC-TT--CAAGTAA----AA-TT-----TT--T-ATA-------AATCCA----AA-TTTTGAAAGGTCTT-TTAA--C--AAAATAGGGAT-CCAgaagtgtcataacttaacca
gi|9 : aaaaataaatccccagtcacattatctgacgtccttactggtcaacttttataacatatgagagtataaacaaatgatttttgttgtaaaattgccctttccatgtgtatgagggtcttaaacattcgatatatgtcccattccctgaagtaaaacacaT-GA-TT-ACAATT--T-C-T--CT-CATGCAAAT-ACAAA-C--ATACCTTA-GA--C-ACTGTG-TGATAAAAAA-TGGCTTGTGGATTTTGTACTCTTATCGCAGA-GCGCAGATC-TATC-T-T-GG--CAAAGAACACTGTTGGAAAAA-CTGTTAAAGGTCCCGCGCTGACATAAGTTGAATATTGTATTCTC-ACTCAGTTTTGCG-C-TCTTAACACAGA--GA-TATAGATAGGCATAAGA--TTCTGGG-AGTTAATAGA-AT--AC-TTTATTTT---TC--CCAAG-AGTTAGGTTGGAGTAGTCAG-gaagtgtcataacttaacaaa
gi|5 : -T--CT-T-T-CAAATCA-AAA-C--ATA----A-GC--C-ACTGGG-TGAAAAAA---TGGGCTGTGGATTT-GT---CTCTTCA-AGC-CCA---ATT-TA-AATAT-GG--AAA-GAA---TGTTT-AAAA--CT--TAAAA-TCCCA---TTACA-AAG--GA----TATAT---C-ACT--ATTTTG-G-TCT-TCAACACAGG--AT-TGTA------TACAGAA--TTCTGGG-AGTTA-TA-A-A----C-TTTA-TTT---TTTTCCAAAGA--TA-GTTG--ATA--TAGTAAA-TG-TA--C-A-TAT-GCACA-CAT-AGAAC--TA-CAA-C--TTGT-A-CA-CTTATTTT-T-TTTTTAATGTAATGT---AG-TA-A-ACA-GATTCTGGTCTG-CATTAGAGGA--CTGGTAT-----A----------------------ACAGAAA----------T-CT-GGA-A-GG--TAG--TCCAAATTTACTTCAA-GTGTTTGT-TTTAAC--TTGGTACTTCAAGATAAA-GATATTGGC--TTAAATATC-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATA-CAATAA-CTTC-C------GAAAGA--TGT-----AGTA-TTT---TTTTG-GATAATGTTC-AATCATACA--TCAC-TAAACTAATATATAG-ATAG---A-AAAAAATATTGTACTCAAATGAGT-T-CCTTT----G---AAAAAAGATG-GGAAAAA-TGGAAATG-TCTTT--CCAG---ATCATT--ATAAT---GT-AGTA-TCT-CCGT-CTG-AAAATAATGTAT--T--T----------------AATTATTA--TTAGGAAATATTATT--AT-TATTA--GT----A--TTTA----TTTATTCA-TTTTTGCT-CA--CCC-ACATGTATAATTATGT-TAAAAGTCTA-TC-GTATGTTGAATG-----TCTGCTG--TGTTTG------TA-TGTCTGTATGTACT-------A-GTA-G---AT-TGC-A-TAAAG-AAA--AA------CAA-TATAAAAAAAAAA
gi|16 : t---TCA----------------------ACAGAAACATAACAAACT-TT-AAA-AAGG--CAG--TC-AAATTCACTTCAA-GTGTT-GT-TTTA-C--GTGGTACC-CTAGAT-AAAGATATTGGC--TTAAAaattgaaaactgagatcgaaa
gi|14 : GAAATATTATT--AG-TAGTA--GT----A--TTTA----TTTATTTA-TTTTGCC--CAACCCC-ACA-GTATG--TATGTGTAAACGTCTA-TCAGTATAT---ATGAATGTC--------TGTATGTTTGTATG-T--CTGCATG---T-------ATGTA-G---AT-TGC-A-ATAAGAAAA--AA------CAA-T
gi|13 : AAATATTTTTTTAT-TATTA--GTTTAAG--TT-AAATTTTTATTCT-TTTGGCCT-GT--ACC-ACA-GTATG--TATGTAT-AAAGTATA-TCAGTATGT---ATG-----TATGGCTACTGTATG------TATT--TTGTCTGT--T-------TTGTA-T---GTCTGT-AGATAA--AAATTAA------TAA-TAA
gi|12 : aTT--AT-TATTA--GT----A--TTTA----TTTATTTA-TTTTGCCT-CA--CCCCACA-GTATA--TATGTATAAAAGTCTA-TCANNNNNN---NNN-----N--------NNNNNN------NN-N--NNNNNNNN--N-------NNNNN-N---NN-NNN-N-NNNNN-NNN--NNNGATTGCAA-TAAGAAAAAACAATAAAAAAAAAAGAAA
gi|17 : TATGT---ATG-----T--------T--ATG------T--T--GTGTATGT--TTCGTAGTATGTAAG---AT-TGCCA-ATAAGAAAA--AA------CAAGTAAAAAAAAAAAAAAAAAAAAAAAAAaaaagaat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): GGTTAAGGAGGAATGCTAAGTCTTGATTTCCATGTTGGATAAGCATTACAGGTATTACAGGCATGTAGTGTCACACAAATGTGTCATTTTTGGTTCTGAGAATTATTTACGCTCAAGAAAATGAAGAGTGTTCTCAAATCCTTTCTGGGATTAGAAACACTCTCATATTATATTTTCAGCAATTTTATGATATTTTTGTAATTGATGATGTCATTCTTAGAACCTTTGTTGGTACAATCATAGAATAAGCGTTTCAAGAACAAGTGTGTTTTGTATAAATCTTCTTTA
Unaligned ( gi|19 ): CAGTCTGCTCCACTTATATTGAACACGTTATATTGAAGTAAAATAAATCACCAATAACAATA
Unaligned ( gi|20 ): AAAACACTCTCATATTTTTCAGAATTTCTGAATATTTTTAATTATGATGTATTATTAG
Alignments
lowQualScore : 3333333 11111 11111 2222222222 1 1 1111 1 11 1 111111111 22222 111 1111 1 1111 1 11 111 111 1111 1111 111 111 1 222222 1111 111 1 1 11 1 11 111 1111 111 1 111 5555555555555555555555 222222222222 2 111111 11111 333333 111 111 111111 11 11 1111 222 3333333333333 22222 1111 1 444444444444444444 111 555555555555555555555555555555 22222222222 111 111
lowQualScore : 8 6666666 1 77 00000 22222 66 5 777 1 3 4444444444 5 77 5 5 0 5 5 5 0 66 66 0 66 5 5 5 0000 0 11 5 0 66 777777777 5 5 88888 5 7 5 5 5 000 77 777 66 5 5 5 5 5 5 66 0000 5 66 5 0 5 6666 1 0 77 5 2222 5 5 5 5 555 1 5 33 88 000 5 5 77 111 2222 5 5 77 2222 000 5 555 5 1 5 77 5 222222 77 5 5 5 6666 5 77 000 5 5 77 1 888 5 3 6 99 6 6 2 00 2 6 3 55 6 6 111 6 9999 111 3 6 6 3 6 1 99 6 000 0000000000000000000000 888888888888 5 5 77 77 5 1 0 5 6 5 5 5 77 5 0 0 77 6 9999 6 6 6 99 6 999999 66666 999999 6 99 222 6 6 111 6 99 3 6 6 99 6 111111 33 6 6 6 99 6 6 6 6 1 66 6 6 5555 6 333 1111111111111 66 5 888 55555 0000 5 0 77 5 77 0 1 5 999999999999999999 000 333333333333333333333333333333 55555555555 5 000 5 999 0 5 1 777
lowQualScore : . ....... . .. ..... ..... .. . ... . . .......... . .. . . . . . . . .. .. . .. . . . .... . .. . . .. ......... . . ..... . . . . . ... .. ... .. . . . . . . .. .... . .. . . . .... . . .. . .... . . . . ... . . .. .. ... . . .. ... .... . . .. .... ... . ... . . . .. . ...... .. . . . .... . .. ... . . .. . ... . . . .. . . . .. . . . .. . . ... . .... ... . . . . . . .. . ... ...................... ............ . . .. .. . . . . . . . . .. . . . .. . .... . . . .. . ...... ..... ...... . .. ... . . ... . .. . . . .. . ...... .. . . . .. . . . . . .. . . .... . ... ............. .. . ... ..... .... . . .. . .. . . . .................. ... .............................. ........... . ... . ... . . . ...
lowQualScore : 0 0000000 0 99 99999 44444 99 0 111 4 2 4444444444 0 99 7 0 0 7 7 7 0 99 99 1 99 0 0 0 6666 0 99 0 0 99 444444444 0 0 99999 0 3 7 7 7 000 99 999 99 0 0 0 0 0 0 99 6666 0 99 0 0 0 7777 4 1 66 7 1111 7 7 7 7 999 4 7 66 33 000 7 7 99 666 1111 7 7 99 1111 000 7 999 7 4 7 99 7 111111 99 7 7 7 0000 7 99 000 7 7 99 4 000 7 3 7 22 7 7 5 88 5 7 3 00 7 7 777 7 2222 777 3 7 7 5 7 0 22 7 000 7777777777777777777777 777777777777 7 7 99 99 7 4 1 7 6 7 7 7 99 7 9 1 99 7 3333 7 7 7 22 7 222222 77777 222222 7 22 555 7 7 777 7 22 5 7 7 22 7 888888 33 7 7 7 22 7 7 7 7 7 00 7 7 5555 7 111 4444444444444 99 0 888 00000 6666 0 0 55 0 99 1 4 7 222222222222222222 000 333333333333333333333333333333 33333333333 7 000 7 444 1 7 0 555
consensus : AGAAGGGATT-CCATACA-----ATATCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-ACATT--CCC--TGAAGTAAAACACATGG--ATCCC-TAT-TTT-GTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--TAT-A-------AAAATTTTA-CTT-GAAGA-C--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TT-G---TT--T-C-T--C-TC-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTG-TG-AAAAAAAA-TGGGCTGTGGA-ATTGT-CTCTT----CAAGA-C-CA-ATT-TA-A-T-T-GG--AAACGAA---TGTT-TAAAAA-C--TTAAA-A-TCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTTG-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTA--TTT---TT-CCAAA-A--TA-GTTG--ATAGTCAG-AAA-TG-TA--C-AATAT-GCACACTTAGAACC-TG-AAACA-TTGTTA-CA-CTTA---TTTT-T-TG-AATGTAATGT---AA-TTA-ACA-GAATCTGGTCTG-CATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-CT-GGA-AAGG--TAG--T-CAAATTTAC-TTCAAGTG-TTGT-TTT-AC--TTGGTAC-CCTAGAT-AAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCA--AA-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTGATAATGTTC-AATCATACA--TCAC-T-AACTACTATG-AG-ATAG---A-AAAAA--ATTGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTT-GGAAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TAAAAAAAAAAAAGA---AAAAAAAAAAAGA
Reference ( family-3658 ) : AGAAGGGATT-CCATACAG----ATATCTGACCTNCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-ACATT--CCC--TGAAGTAAAACACATGG--ATCCC-TAT-TTT-GTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--TAT-A-------AAAATTTTA-CTT-GAAG--C--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TT-G---TT--T-C-T--C-TC-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTG-TG-AAAAAAAA-TGGGCTGTGGA-ATTGT-CTCTT----CAAGA-C-CA-ATT-TA-A-T-T-GG--AAACGAA---TGTT-TAAAAA-C--TTAAA-A-TCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTTG-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTA--TTT---TT-CCAAA-A--TA-GTTG--ATAGTCAG-AAA-TG-TA--C-AATAT-GCACACTTAGAACC-TG-AAACA-TTGTTA-CA-CTTA---TTTT-T-TG-AATGTAATGT---AA-TTA-ACA-GAATCTGGTCTG-CATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-CT-GGA-AAGG--TAG--T-CAAATTTAC-TTCNAGTG-TTGT-TTT-AC--TTGGTAC-CCTAGATGAAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCA--AA-CTTCTC------GAAAGAAATGT-----AGTATTTATA---TTGATAATGTTC-AATCATACA--TCAC-T-AACTACTATG-AG-ATAG---A-AAAAA--ATTGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTAAGAAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGTATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TAAAAAAAAAAAANA---AAAAAAAAAAAGA
gi|1 : AGAAGGGATTTCCATACA-----ATATC-GACC-GCTTACT--GGTCGA--GGAATTTTTA---TTAAACAT-ATGAGAGTATATA-CAAAT-ATTTTGGTCG--------TAAAATTGCC-TTTCAC-G--T-GTATGGAGG-TCCTTAAACAAT-T-CGATTATATGT-ACATTTCCCC--TGAAGTAAAACACATGG--ATCCC-TAT-TTTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TTACTAT-GTTTTTTTGAAATTTTAACTT-GAAGA-CGAAAAAAGGGA--CCAGGAGAATTTAT-GA-TTTG---TTGTT-C-TGTC-TC-T-CAAAT-A-AAAAC--ATA----AAGC--CGACTGTG-TG-AAAATAAA--GGGCTG-GGA-ATAAT-CTCTT----CAAGAAC-CA-ATTCTA-A-T-T-GGGAAAAC-AA---TGTT-TAAAAAAC--TTAAA-AATCC----C-TTACA-AAG--GA----TATA---TCGACTGAATTTTG-GGT-TTCA-CACAGGTAAT-TGTAG-----CAGAGAGATTTCTGGG-AGTTAATA-A-ATAGCC-TTTA--TTTGTTTT-CCAAA-A--TA--TTG--ATAGTCAG-AAAGTGGTAATCGAATATTGCACACTTAGAAGC-TGTAAACGCTTGTTAGCAGCTTA---TTTTGT-TGGAATGTAATGT---AA-TTA-ACA-GAATCTGGTCTGGCCTTAGAGGACCTGGG-AT---TCA----------------------ACA-AAA----------TGCT-GGATAAGG--TAAGTT-CAAAGTT-C-TTC-AGTG-TTGT-TTT-ACACTTGGTAC-CCTAGCTGAAAGAGATTGGC--TTAAATATT-ATT--AATTTTTATTGAGTCAA-GAAATTTATATATCA--AACCTTCTCTGAAAAGAAAAAAATGTTTTAAAGTATTT-TAAATTTGATAATGTTCAAATCATACA--TCACTT-AACTACTATG-AG-ATAG---ATAAAAA--AATGTACTCAAAT-AGTATCC--TT-TGAAAA--AAAAAGAT--GGAAACA-TGGAAATGTTCTTT-TCC-C--CATAATTCCATAAT-T-GTGATTATTCTCCGT-CTGAAAAATAATGTA-T--TTATTA-TTATTAGGAAAATATTATTATTAAGAAATATT--AT-TATTAGT---AGTGTATTA----TTTATTTATTTTTGCCT-CA-CCCCACC-GTATA--TATGCATAAAA-TCTA-TC
gi|10 : gttaaggagaaatgcctagtctctggatttttccatgtggacaaagcctatttaaagtaatacagctgtagtgtcacacataggtgtcatttggttctgaataaatacgggcaaaaaaatgaaagtgttctctaaatcctttttggataaaacaactctccatatttttcagaatttatgaatatttttgattcatgatgtattgtagaacctttgtggtaccagtcatagaattaaggttcaaaacaagtgtgtttttttataaatctcttaacgaTATCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATA-AACAAATGATTTTTGTTG--------TAAAATTGCCCTTTCCATG--T-GTATGAGGG-TC-TTAAACA-T-T-CGA-TATATGTCCCATT--CCC--TGAAGTAAAACACATGG--ATCCC-TAT-TTT-GTT----AAAAGACCTTT--CAAAA-TTTGGA-TT--TAT-A-------AAAATTTTA-CTT-GAAGGACA-AAAAAGGGAT-CCAGAAG
gi|11 : aaaaataaatccccagtcacatATGT-ACAAT--CCG--TGAAGTCAAACACCTGG--AACCC-TCC-TCA-ATT----AAAAGACC-TTTCCAACA---TGAA-TT--TAT-T-------AAGATTTCA-CTTAAAAA--T--AACAAGGCGT-CCAGAAG-ATC-------TT-G---TT--T-A-T--G-TC-T-CATAT-A-CAG-C--AAA----A-GCTAT-ATTGTATTG-AAAAAAAA-tgtcataacttaacaaa
gi|12 : TT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGTATAAAAGTCTA-TCANNNNNNNNNNNNNNNNNNNNNNNN---NNN-----N--------NNNNNN------NN--NNNNNNNNN--N-------NNNNN-G---AT-TGC-A-ATAAGAAAAAACAA-TAAAAAAAAAAGAAA---AAAAGAAcnagagtaggcaattctattt
gi|13 : AAATATT-------------TTTTTAT-TATTAGTTTAA-G---TTAAATTTTTATTCT-TTTGGCCTGTA-CC--ACA-GTATG--TATGTATAAA-GTATA-TCA------------------GTATGT---ATG-----TATGGCTACTGTATG------TAT-TTTGTCTGT--T-------TTGTA-T---GTCTGT-AGATAAAAATTAATAA-TAAt
gi|14 : aGAAATATT-------------ATT--AG-TAGTAGT---A-T---TTA----TTTATTTA-TTTTGCCC-AA-CCCCACA-GTATG--TATGTGTAAACGTCTA-TCA------------------GTATAT---ATGAATGTC--------TGTATGTTTGTATG--TCTGCATG---T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-T
gi|15 : GAAAGGATT-TCATACAGTACAATGTCTGACTTTTTTTTTTAAGTCAA--GGTGTTTTTA---TTG--CTT-ATGAGAGTAT--A-CAAATTACTT--AT-G--------TAAAGGTGCC-CTT
gi|16 : ---TCA----------------------ACAGAAACATAACAAACT-TT-AAA-AAGG--CAG--T-CAAATTCAC-TTCAAGTG-TTGT-TTT-AC--GTGGTAC-CCTAGAT-AAAGATATTGGC--TTAAA
gi|17 : TATGT---ATG-----T--------T--ATG------T---TGTGTATGT--TTCGTAGTATGTAAG---AT-TGCCA-ATAAGAAAAAACAAGTAAAAAAAAAAAA
gi|18 : cTA--AAT-ATAAAAACATA-A-CAAATAAATTTGAT-GTACAATACTAAAATTCCC-TTTCACTGACT-ATATGAGGGATC-Taaaaaaaaaaaaaa
gi|2 : AGAAGGGATT-CCATA-------ACATCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA---CAAATGATTTTGGT----------TAAAATTGCC-TTTCACTG--T-GTATGAGGG--C-TTAAACA-T-T-CGATTATATGT-ACATT--CCC--TGAAGTAA--CAAATGG--ATCCC-TAT-TTT-GTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--TAT-A-------AAAATTTTA-CTT-GAAG--C--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TT-G---TT--T-C-T--C-TC-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTG-TG-AAAAAAAAATGGGCTGTGGA-ATTGT-CTTTT----CAAGA-C-CA-ATT-TA-A-T-T-GG--AAACAAA---TGTT-TAAAAA-C--TTAAA-A-TCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTTG-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTA--TTT---TC-CCAAA-A--TA-GTTG--ATAGTCAG-AAA-TG-TA--C-AATAT-GCA-ACT-AGAACC-TG-AAACA-TTGTTA-CA-CTTA---TTTT-T-TG-AATGTAATGT---AA-TTA-ACA-GAATCTGGTCTG-CATTAGAG-ACT--GG-AT---TCA----------------------ACAGAAA----------T-CT-GGA-AAGG--TAG--T-CAAATTTAC-TTACAGTG-TTGT-TTT-AC--TTGGTAC-CCTAGATAAAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCA--AA-CTTCTC------GAAAGAAATGT-----AGTATTTATA---TTGATAATGTTC-AATCATACA--TCAC-T-AACTACTATA-AG-ATAG---A-AAAAA--ATTGCACTCAAAT-AGT-TCT--TT-TG---A--AAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTA-TC-TCGT-CTG-AAAATAATGTATT--TTATTA-TTAT---AGAAATATT-------------ATT--AT-TATTAGT---A-----TTA----TTTATTTA-TTTTGCCT-CA--CCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAG-AAAAACAA-TAAAAAAAAAAAAGA---AAAAAAAAAAAGA
gi|3 : AGAAGGGATT-CCATACA-----ATATCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAG-GTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GATTGAGGG-TC-TTAAACA-T-T-CGATTATATGT-ACATT--CC---TGAAGTAAAACACATG---ATCCC--AT-TTT-GTT----AAAAGACC-TT--CAAAA-TTTGGATTT--TATAA-------AAAATTTTA-CTT-GAGA--C--AAAA--GGAT-CCA-GAGAATTTAT-GA-TT-G---TT--T-C-T--CTTC-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTG-TGAAAAAAAAA-TGGGC-GTGGA-ATTGT-CTTTT----CAAGA-C-CA-ATT-TA-A-T-T-GG--AAACAAA---TGTT-TAAAAA-C--TTAAA-A-TCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTTT-G-T-TTCAACACAGG--AT-TGTA------CATAGAA---TCTGGG-AGTTAATA-A-AA--CC--TTA--TTT---TT-CCAAA-A--TA-GTTG--A-AGTCAG-AAA-TG-TA--C-AATAT-GCACAC-TAGAACC-TGAAAACA--TGTTA-CA-CTTA---TTTT-T-T---ATGTAAAGT---AATTTA-ACA-GAATCTGGTCGG-CATTAGGGAGCT--GG-AT---TCA----------------------ACAGAAA----------T-CC-GGA-AAGG--TAG--T-CAAA-TTACTTTCAAGTG-TTGT-TTT-AC--TTGGTAC-CCTA-ATG-AAGATA-TGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCA--AA-CTTCTC------GAAAGAAATGT-----AGTATTT-TAT--TTGATAATGTTC-AATCATACA--TCAC-T-AACTACTA-A-AG-ATAG---A-AAAAA--A-TGCACTCAAAT-AGT-TCC--TT-TG---A--AAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTACT--CCGT-CTG-AAAATAATGTA-T--TTATTA-TTATT--AGAAATATT-------------ATT--AT-TATTAGT---A-----TTA-----TTATTTA-TTTTGCCTCCA-CCCCACA-GTATA--TATGCATAAAAGTCTATTCA------------------GTATGT---ATGT----T--------TGTATG----------TCTGTATG---T-------ATGGA-GACAAT-TGC-A-ATAAGAAAAAACAA-TAAAAAAAAAAAAGA---AAAAAAAAAAAGAtttaaac
gi|4 : aAAGGGATT-CCATAGAA----ATAT-TGACCTGCTTA----GGTCGAACGGAATTTT-AATATCA--CATCATGAGAGTATA-A--AAATGATTT-GGT-G--------TAAAATTGCC-TTTCACTG--TAGTA-GAGGG-TCCTTATACA-TGT-CGATTATATGT-ACATT--CCC--TGAAGTAAA-CACATGGGAATCCCCTAT-TTT-TGT----AAAAGACT-TTT-CAAAAGTTTGGA-TT--TAT-A-------AAAATTTTA-CTT-GAAGA-C--AAAAAGGGATTCCAGGAGAATTTATTGA-TT-G---TT--TTC-T--C-TC-T-CAAAT-A-AAA-C--ATA----A-GC--C-ACTGTGCTG-AAAAAAAA-TGGGCTGTGGA-ATTGT-CTCTT----CAAGA-C-CA-ATT-TA-A-T-TTGG--AAACAAA---TATT-TAAAAA-C--TTAAA---TCC----T-TTACA-AAG--GG----TATA---T--ACG--ATTTTG-G-T-TTCAACACAGG--ATATGTA------CATAGAA--TT---GG-AGTTA-TA-A-ATA-CC-TTTT--ATT---TT-CCAAA-A--TA-GTTG--ATAGTCAG-A---TG-TA--C-A-TAT-GCACACTTAGAACC-TG-AAACAGTTGTTA-CA-CTTA---TTTT-TATG-ATAGTA-TGT---AAATTA-ACA-GA-TCTGTTCTG-CATTAGAGGACT--GG-AT---TCA-----------------------CAGAAA----------T-CTTGGA-AAGAGTTAG--T-CAAATTTAC-TTCAAGTG-TTGTCTTT-AC--TTGGTAC-CCT-GAT-AAAGATATTGGCATTTAAATATTAA-T--AA--TTTATT-AGTCAA-GAAATTTATATATCA--AA-CTTCTC------GAAAGAAATGT-----AGTATTT-TAT--TTGATAATGTTC-AATCATACA--TCAC-T-AACTACTATG-AG-ATAGAAAA-AAAAA--ATTGTACTCAAAT-AGT-TCC--TTCTG---A--AAAAAGATGAGAAAACATTGGAAATG-TCTTTCTCCAG--CATAATT-CATAAT-TGGT-ATTATT--CCGTGCTG-AAAATGATGTATTTATTATTA-TTATTT-TGAAATATT-------------ATT--ATATATTAGT---AGT---TTA----TTTATTTA-TTTTGCCT-CACCCCCACA-GTAT
gi|5 : aagt-T--C-TT-T-CAAATCA-AAA-C--ATA----A-GC--C-ACTGGG-TG-AAAAAA---TGGGCTGTGGA-TTTGT-CTCTT----CAAGC-C-CA-ATT-TA-AATAT-GG--AAA-GAA---TGTT-TAAAA--C--TTAAA-A-TCC----CATTACA-AAG--GA----TATA---TC-ACT--ATTTTG-G-TCTTCAACACAGG--AT-TGTA------TACAGAA--TTCTGGG-AGTT-ATA-A-A----C-TTTATTTTT---TT-CCAAAGA--TA-GTTG--ATA--TAGTAAA-TG-TA--C--ATAT-GCACACATAGAA-C-TA-CAAC--TTG-TA-CA-CTTATTTTTTT-T-TT-AATGTAATGT---AG-TAA-ACA-GATTCTGGTCTG-CATTAGAGGACT--GGTAT-----A----------------------ACAGAAA----------T-CT-GG--AAGG--TAG--TCCAAATTTAC-TTCAAGTGTTTGT-TTTAAC--TTGGTACTTCAAGAT-AAAGATATTGGC--TTAAATATC-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATA-CAATAA-CTTC-C------GAAAG--ATGT-----AGTATTTTTT---TGGATAATGTTC-AATCATACA--TCAC-TAAACTAATATATAG-ATAG---A-AAAAAATATTGTACTCAAATGAGT-TCC--TT-TG---A--AAAAAGATG-GGAAAAA-TGGAAATG-TC-TT-TCCAG---ATCATT--ATAA--T-GT-AGTATCT-CCGT-CTG-AAAATAATGTATT--TAATTA-TTA-TTAGGAAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTCA-TTTTTGCT-CA--CCCACATGTATAATTATGT-TAAAAGTCTA-TC-------------------GTATGTTGAATG-----TCTGCTG--TGTTTG------TATGTCTGTATGTACT-------A-GTA-G---AT-TGC---ATAAAGAAAAACAA-TATAAAAAAAAAAAATTGAAAA
gi|6 : tAGGC-TC-TTAAACA-C-TACAATTATGTGT-ACATT--TCCCGTGAA-TAAAACACGTGG--ATCCC-TATATTT-GTTTAAAAAAAAACCCTT--CAAAA-TCTGAAATT--TAT-A-------AAAATTTC--CTT-GAAG--G--ACAAAAGGGT-CCAGGAGAATT-AT-GAGTT-G---AT--T-AAT--C-CA-C-CAAA--A-TAA-CTGAGG----A-GC--C-ACTGTG-GG-AACAAA----------CGG------T-CTCTT----CAATA-C-CA-ATT-TA-A-TGT-GGG-AAAAGAA---AGCT-TAACAA-C--TTAAA-A-TCC----C-CCACA-AAG---A----TATA---TC-ACT---CTTTG-G-T-TTTAACACAGG--AT-TGTA------CATAGAA--TTCCGAGCAGTTAATA-GCAT--AGGTTTA--CTT---TT-TCAAA-A--AATGTTG---TAGTCAG-AACCTG-TA--C-AATAT-GCAAACT-AGAACCCTG-AAACA-T-GTAA-CA--TTA---TCAT-T-------GTAATGTCTGAA-ATACACATAAATCTGATCTG-CATTAGAGGACT---G-ATTTTTCAGAAAAAAAAAAAAAAAAAAAAAACCGAAA------------CT-GTA-AAG---TAG--T-CAAATT-AT-GACAAGTG-T-GT-TTT-AC--TTGGT-T-CCGAGAT-AAAGATACTGCC--TTAA-TATT-A-CTAAA-TTTTATA-GGTCAAAGAAATGTATATGT-A--AA-CTTCTC------GAAAGAA---T-----CGTATT---A---TTGATAATATCC-AATCATGCAATTCAC---AGTTACTTTG-AGGATAG---A-AGAAA--ATTGTACTCAGAT-AGT-CACTTTT-TG---AAGAAGAAGAT--GGAAACA-TGAAAATG-TCTTT-TCCAAGCCAAAACC-CAAAATGT-GT-ATTATTC-CCGT-CTG-AAAATGA-G------TTATTATTTATTTctgagatcgaaa
gi|7 : aTATCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGTCCCATT--CCC--TGAAGTAAAACACATGG--ATCCC-TAT-TTT-GTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--TAT-A-------AAAATTTTA-CTT-GAAGA-C--AAAAAGGGAT-CCAGAAG
gi|9 : cactctattccacttatattgaaatcacttacattgaagtaaaaataaatccccagtcacatT-GA-TT-ACAATT--T-C-T--C-TCATGCAAAT-ACAAA-C--ATACCTTA-GA--C-ACTGTG-TG-ATAAAAAA-TGGCTTGTGGATTTTGTACTCTTATCGCAGAG-CGCAGATC-TATC-T-T-GG--CAAAGAACACTGTTGGAAAAA-CTGTTAAAGG-TCCCGCGC-TGACATAAGTTGAATATTGTATTCTC-ACTCAGTTTTGCGCT-CTTAACACAGA--GA-TATAGATAGGCATAAGA--TTCTGGG-AGTTAATAGA-AT--AC-TTTA--TTT---TTCCCAAG-AGTTAGGTTGGAGTAGTCAG-tgtcataacttaacca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTTAAGGAGGAATGCTAAGTCTTGATTTCCATGTTGGATAAGCATTACAGGTATTACAGGCATGTAGTGTCACACAAATGTGTCATTTTTGGTTCTGAGAATTATTTACGCTCAAGAAAATGAAGAGTGTTCTCAAATCCTTTCTGGGATTAGAAACACTCTCATATTATATTTTCAGCAATTTTATGATATTTTTGTAATTGATGATGTCATTCTTAGAACCTTTGTTGGTACAATCATAGAATAAGCGTTTCAAGAACAAGTGTGTTTTGTATAAATCTTCTTTA
Unaligned ( gi|19 ): CAGTCTGCTCCACTTATATTGAACACGTTATATTGAAGTAAAATAAATCACCAATAACAATA
Unaligned ( gi|20 ): AAAACACTCTCATATTTTTCAGAATTTCTGAATATTTTTAATTATGATGTATTATTAG
Alignments
lowQualScore : 11111 11111 11111 2222222222 1 1111 1 11 1111111 11 1 111111 1111 1 1111 1 1111 11111 11 111 1111 1111 111 111 222222 1111 111 11 1 1 1 1 11 3333333 111 111 5555555555555555555555 222222222222 1 111111 11111 222 111 111 111111 11 111 11 1111 3333333333333 22222 1111 1 444444444444444444 111 555555555555555555555555555555 22222222222 111 111
lowQualScore : 8 0 66 44444 0 77 00000 22222 66 5 777 1 3 4444444444 5 77 5 5 0 5 5 5 5 5 66 66 0 66 5 5 5 0000 0 11 5 5 66 5 6666666 5 5 5 5 11 5 2 7 5 1 222222 4444 555 5 0 5 66 5 0000 66 5 0 5 5 3 1 1 0 77 5 2222 5 5 5 5 44444 33 88 000 555 77 5 5 2222 5 5 77 2222 000 5 555 5 5 5 5 77 5 222222 77 5 5 5 6666 5 000 33 5 77 1 888 5 3 6 99 6 6 2 1 6 3 55 3 6 6 6 0000000 888 6 6 6 6 99 6 000 0000000000000000000000 888888888888 5 5 77 77 5 1 0 5 1 5 5 77 5 5 1 0 77 6 9999 6 6 6 99 6 999999 66666 6 555 6 6 99 6 6 6 6 111 6 222 6 6 99 6 111111 33 6 6 6 99 6 222 6 1 66 6 6 5555 6 7 1 5 1111111111111 66 5 888 55555 0000 5 0 77 5 77 0 1 5 999999999999999999 000 333333333333333333333333333333 55555555555 5 000 5 999 0 5 6 444
lowQualScore : . . .. ..... . .. ..... ..... .. . ... . . .......... . .. . . . . . . . . .. .. . .. . . . .... . .. . . .. . ....... . . . . .. . . . . . ...... .... ... . . . .. . .... .. . . . . . . . . .. . .... . . . . ..... .. .. ... ... .. . . .... . . .. .... ... . ... . . . . .. . ...... .. . . . .... . ... .. . .. . ... . . . .. . . . . . . .. . . . . ....... ... . . . . .. . ... ...................... ............ . . .. .. . . . . . . . .. . . . . .. . .... . . . .. . ...... ..... . ... . . .. . . . . ... . ... . . .. . ...... .. . . . .. . ... . . .. . . .... . . . . ............. .. . ... ..... .... . . .. . .. . . . .................. ... .............................. ........... . ... . ... . . . ...
lowQualScore : 0 7 33 33333 7 99 99999 44444 99 0 111 4 2 4444444444 0 99 7 0 0 7 7 7 0 0 99 99 1 99 0 0 0 6666 0 99 0 0 99 0 2222222 0 0 0 0 99 0 2 3 7 4 666666 7777 111 0 0 0 99 0 6666 99 0 0 0 0 2 4 4 1 66 7 1111 7 7 7 7 00000 66 33 000 999 99 7 7 1111 7 7 99 1111 000 7 999 7 7 7 7 99 7 111111 99 7 7 7 0000 7 000 66 7 99 4 000 7 3 7 22 7 7 5 7 7 3 00 5 7 7 7 8888888 333 7 7 7 7 22 7 000 7777777777777777777777 777777777777 7 7 99 99 7 4 1 7 4 7 7 99 7 7 4 1 99 7 3333 7 7 7 22 7 222222 77777 7 000 7 7 22 7 7 7 7 777 7 777 7 7 22 7 888888 33 7 7 7 22 7 555 7 7 00 7 7 5555 7 3 4 7 4444444444444 99 0 888 00000 6666 0 0 55 0 99 1 4 7 222222222222222222 000 333333333333333333333333333333 33333333333 7 000 7 444 1 7 7 000
consensus : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAA-AAAATGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACGAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTAT---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCACACTTAGAACC-TG-AAACA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCT-GCATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTAGAT-AAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
Reference ( family-3658 ) : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAA-AAAATGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACGAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTAT---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCACACTTAGAACC-TG-AAACA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCT-GCATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTAGAT-AAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
gi|1 : AGAAGGGATTTCCATACAA-TA-----TC-GACC-GCTTACT--GGTCGA--GGAATTTTTA---TTAAACAT-ATGAGAGTATATA-CAAAT-ATTTTGGTCG--------TAAAATTGCC-TTTCAC-G--T-GTATGGAGG-TCCTTAAACAAT-T-CGATTATATGT-AC-ATTTCCCC--TGAAGTAAAACACATGG--ATCCC-TATT-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TTACT-ATGTTTTTTTGAAA-TTTTAACTTGAA-G-ACGAAAAAAGGGA--CCAGGAGAATTTAT-GATTTG---TTGTT-CTGTCT-C-T-CAAATAA-AAAC--ATAA----AGC--CGACTGTG-TG-AAAA-TAAA-GGGCTG-GGA-ATAAT-CTCTT----CAAGAAC-CA-ATTCTA-A-T-TGGGAAAAC-AA---TGTT-TAAAAAAC--TTAAAA-ATCC----C-TTACA-AAG--GA----TATA---TCGACTGAATTTTGG-G-T-TTC-ACACAGGTAAT-TGTAG-----CAGAGAGATTTCTGGG-AGTTAATA-A-ATAGCC-TTTATTTGTTTT--CCAAA-A--TA--TTG--ATAGTCAG-AAAGTGGTAATCGAATATTGCACACTTAGAAGC-TGTAAACGCTTGTTAGCAGCTTATTTTGT-TGG---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCTGGCCTTAGAGGACCTGGG-AT---TCA----------------------ACA-AAA----------TGC-TGGATAAGG--TAAGTTC-AAAGTT-C-TTC-AGTGTT-GT-TTTACA-CTTGGTACC-CTAGCTGAAAGAGATTGGC--TTAAATATT-ATT--AATTTTTATTGAGTCAA-GAAATTTATATATCAA--ACCTTCTCTGAAAAGAAAAAAATGTTTTAAAGTATTT-TAAATTTG-ATAATGTTCAAATCATACA--TCACTTAA-CTACTATG-AG-ATAG---ATAAAAAAA--TGTACTCAAAT-AGTATCC--TT-TGAAAA--AAAAAGAT--GGAAACA-TGGAAATGTTCTTT-TCC-C--CATAATTCCATAAT-T-GTGATTATTCTCCGT-CTGAAAAATAATGTA-T--TTATTA-TTATTAGGAAAATATTATTATTAAGAAATATT--AT-TATTAGT---AGTGTATTA----TTTATTTATTTTTGCCT-CA-CCCCACC-GTATA--TATGCATAAAA-TCTA-TC
gi|10 : gttaaggagaaatgcctagtctctggatttttccatgtggacaaagcctatttaaagtaatacagctgtagtgtcacacataggtgtcatttggttctgaataaatacgggcaaaaaaatgaaagtgttctctaaatcctttttggataaaacaactctccatatttttcagaatttatgaatatttttgattcatgatgtattgtagaacctttgtggtaccagtcatagaattaaggttcaaaacaagtgtgtttttttataaatctcttaacgaACAT-TA-----TCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATA-AACAAATGATTTTTGTTG--------TAAAATTGCCCTTTCCATG--T-GTATGAGGG-TC-TTAAACA-T-T-CGA-TATATGTCCC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACCTTT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAAGG-ACA-AAAAAGGGAT-CCAGAAG
gi|11 : aaaaataaatccccagtcATGT-AC-AAT--CCG--TGAAGTCAAACACCTGG--AACCC-TC-C-TCAATT----AAAAGACC-TTTCCAACA---TGAA-TT--T-ATT-------AAGA-TTTC-ACTTAAA-A-AT--AACAAGGCGT-CCAGAAG-ATC-------TTG---T--TT-A--TGT-C-T-CATAT-A-CAGC--AA-A----AGCTAT-ATTGTATTG-AAAA-AAAAtgtcataacttaacaaa
gi|12 : TT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGTATAAAAGTCTA-TCANNNNNNNNNNNNNNNNNNNNNNNN---NNN-----N--------NNNNNN------NN--NNNNNNNNN--N-------NNNNN-G---AT-TGC-A-ATAAGAAAAAACAA-T---AAAAAAAAAA---GAAAAAAAGAAcnagagtaggcaattctattt
gi|13 : -AAATATT-------------TTTTTAT-TATTAGTTTAA-G---TTAAATTTTTATTCT-TTTGGCCTGTA-CC--ACA-GTATG--TATGTATAAA-GTATA-TCA------------------GTATGT---ATG-----TATGGCTACTGTATG------TAT-TTTGTCTGT--T-------TTGTA-T---GTCTGT-AGATAAAAATTAATAA-TA-At
gi|14 : aG-AAATATT-------------ATT--AG-TAGTAGT---A-T---TTA----TTTATTTA-TTTTGCCC-AA-CCCCACA-GTATG--TATGTGTAAACGTCTA-TCA------------------GTATAT---ATGAATGTC--------TGTATGTTTGTATG--TCTGCATG---T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-T
gi|15 : GAAAGGATT-TCATACAG-TACAATGTCTGACTTTTTTTTTTAAGTCAA--GGTGTTTTTA---TTG--CTT-ATGAGAGTAT--A-CAAATTACTT--AT-G--------TAAAGGTGCC-CTT
gi|16 : ---TCA----------------------ACAGAAACATAACAAACT-T-TAAA-AAGG--CAG--TC-AAATTCAC-TTCAAGTGTT-GT-TTT--A-CGTGGTACC-CTAGAT-AAAGATATTGGC--TTAAA
gi|17 : TATGT---ATG-----T--------T--ATG------T---TGTGTATGT--TTCGTAGTATGTAAG---AT-TGCCA-ATAAGAAAAAACAAGTA-AAAAAAAAAAA---
gi|18 : cTA--AAT-ATAAAAACATA-A-CAAATAAATTTGAT-GTACAATACTAAAATTCCC-TTTCACTGACT-ATATGAGGGATC-Taaaaaaaaaaaaaa
gi|2 : AGAAGGGATT-CCATA--A-CA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA---CAAATGATTTTGGT----------TAAAATTGCC-TTTCACTG--T-GTATGAGGG--C-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAA--CAAATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G--C--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAAAAAAATGGGCTGTGGA-ATTGT-CTTTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACAAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTAT---TTTC--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCA-AC-TAGAACC-TG-AAACA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCT-GCATTAGA-GACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTACAGTGTT-GT-TTT--A-CTTGGTACC-CTAGATAAAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTTATA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATA-AG-ATAG---A-AAAAAAT--TGCACTCAAAT-AGT-TCT--TT-TG---A--AAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTA-TC-TCGT-CTG-AAAATAATGTATT--TTATTA-TTA--TAG-AAATATT-------------ATT--AT-TATTAGT---A-----TTA----TTTATTTA-TTTTGCCT-CA--CCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAG-AAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
gi|3 : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAG-GTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GATTGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CC---TGAAGTAAAACACATG---ATCCC--A-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--TTATA-------AAAAATTTT-ACTTGA--G-AC--AAAA--GGAT-CCAG-AGAATTTAT-GA-TTG---T--TT-C--TCTTC-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TGAAAAA-AAAATGGGC-GTGGA-ATTGT-CTTTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACAAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-T-G-T-TTCAACACAGG--AT-TGTA------CATAGAA---TCTGGG-AGTTAATA-A-AA--CC--TTAT---TTTT--CCAAA-A--TA-GTTG--A-AGTCAG-AAA-T-GTA--C-AATA-TGCACAC-TAGAACC-TGAAAACA--TGTTA-CA-CTTATTTT-T-T------ATGTAAAGT---AATTTA-ACA-GAATCTGGTCG-GCATTAGGGAGCT--GG-AT---TCA----------------------ACAGAAA----------T-C-CGGA-AAGG--TAG--TC-AAA-TTACTTTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTA-AT-GAAGATA-TGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TAT--TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTA-A-AG-ATAG---A-AAAAAA---TGCACTCAAAT-AGT-TCC--TT-TG---A--AAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTACT--CCGT-CTG-AAAATAATGTA-T--TTATTA-TTA-TTAG-AAATATT-------------ATT--AT-TATTAGT---A-----TTA-----TTATTTA-TTTTGCCTCCA-CCCCACA-GTATA--TATGCATAAAAGTCTATTCA------------------GTATGT---ATGT----T--------TGTATG----------TCTGTATG---T-------ATGGA-GACAAT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGAtttaaac
gi|4 : aAAGGGATT-CCATAGAAATA-----T-TGACCTGCTTA----GGTCGAACGGAATTTT-AATATCA--CATCATGAGAGTATA-A--AAATGATTT-GGT-G--------TAAAATTGCC-TTTCACTG--TAGTA-GAGGG-TCCTTATACA-TGT-CGATTATATGT-AC-ATT--CCC--TGAAGTAAA-CACATGGGAATCCCCTA-T-TTTTGT----AAAAGACT-TTT-CAAAAGTTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGATTCCAGGAGAATTTATTGA-TTG---T--TTTC--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTGCTG-AAAA-AAAATGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TA-ATT-TGG--AAACAAA---TATT-T-AAAAAC--TT--AA-ATCC----T-TTACA-AAG--GG----TATA---T--ACG--ATTTT-G-G-T-TTCAACACAGG--ATATGTA------CATAGAA--TT---GG-AGTT-ATA-A-ATA-CC-TTTTA---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG---A-T-GTA--C--ATA-TGCACACTTAGAACC-TG-AAACAGTTGTTA-CA-CTTATTTT-TAT-G---ATAGT-ATGTA--AA-TTA-ACA-G-ATCTGTTCT-GCATTAGAGGACT--GG-AT---TC-----------------------ACAGAAA----------T-CTTGGA-AAGAGTTAG--TC-AAATTTAC-TTCAAGTGTT-GTCTTT--A-CTTGGTACC-CT-GAT-AAAGATATTGGCATTTAAATATTAA-T--AA--TTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TAT--TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAGAAAA-AAAAAAT--TGTACTCAAAT-AGT-TCC--TTCTG---A--AAAAAGATGAGAAAACATTGGAAATG-TCTTTCTCCAG--CATAATT-CATAAT-TGGT-ATTATT--CCGTGCTG-AAAATGATGTATTTATTATTA-TTATTTTG-AAATATT-------------ATT--ATATATTAGT---AGT---TTA----TTTATTTA-TTTTGCCT-CACCCCCACA-GTAT
gi|5 : aagt--TCT-T-T-CAAATCA-AAAC--AT-A----AGC--C-ACTGGG-TG-AAAA-AA--TGGGCTGTGGA-TTTGT-CTCTT----CAAG-CC-CA-ATT-TA-AATATGG--AAA-GAA---TGTT-T-AAAA-C--TT-AAA-ATCC----CATTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-TCTTCAACACAGG--AT-TGTA------TACAGAA--TTCTGGG-AGTTA-TA-A-A----C-TTTAT---TTTTTTCCAAAGA--TA-GTTG--ATA--TAGTAAA-T-GTA--C-A-TA-TGCACACATAGAAC--TA-CAAC--TTGT-A-CA-CTTATTTT-T-T-TTTTAATGTAATGT---AG-TAA-ACA-GATTCTGGTCT-GCATTAGAGGACT--GGTAT-----A----------------------ACAGAAA----------T-C-TGGA-A-GG--TAG--TCCAAATTTAC-TTCAAGTGTTTGT-TTT--AACTTGGTACTTCAAGAT-AAAGATATTGGC--TTAAATATC-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATA-CAATAA-CTTC-C------GAAAGA--TGT-----AGTATTT-TT---TTGGATAATGTTC-AATCATACA--TCAC-TAAACTAATATATAG-ATAG---A-AAAAAATATTGTACTCAAATGAGT-TCC--TT-TG---A--AAAAAGATG-GGAAAAA-TGGAAATG-TCTTT--CCAG---ATCATT--ATAAT---GT-AGTATCT-CCGT-CTG-AAAATAATGTATT--TAATTA-TTATTAGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTCA-TTTTTGCT-CA--CCCACATGTATAATTATGT-TAAAAGTCTA-TC-------------------GTATGTTGAATG-----TCTGCTG--TGTTTG------TATGTCTGTATGTACT-------A-GTA-G---AT-TGC---ATAAAGAAAAACAA-TATAAAAAAAAAAAATTGAAAA
gi|6 : tAGGC-TC-TTAAACA-C-TACAATTATGTGT-AC-ATT--TCCCGTGAA-TAAAACACGTGG--ATCCC-TA-TATTTGTTTAAAAAAAAACCCTT--CAAAA-TCTGAAATT--T-ATA-------AAAA-TTTC--CTTGAA-GGAC--AAAAGGG--T-CCAGGAGAATT-AT-GAGTTG---A--TT-AA-TCC-A-C-CAAA--A-TAACTGAG-G----AGC--C-ACTGTG-GG-AACA-AA---------CGG------T-CTCTT----CAAT-AC-CA-ATT-TA-A-TGTGGG-AAAAGAA---AGCT-T-AACAAC--TT-AAA-ATCC----C-CCACA-AAG---A----TATA---TC-ACT---CTTT-G-G-T-TTTAACACAGG--AT-TGTA------CATAGAA--TTCCGAGCAGTTAATA-GCAT--AGGTTTAC---TTTT--TCAAA-A--AATGTTG---TAGTCAG-AACCT-GTA--C-AATA-TGCAAACT-AGAACCCTG-AAACA-T-GTAA-CA--TTATCAT-T----------GTAATGTCTGAA-ATACACATAAATCTGATCT-GCATTAGAGGACT---G-ATTTTTCAGAAAAAAAAAAAAAAAAAAAAAACCGAAA------------C-TGTA-AAG---TAG--TC-AAATT-AT-GACAAGTGT--GT-TTT--A-CTTGGT-TC-CGAGAT-AAAGATACTGCC--TTAA-TATT-A-CTAAA-TTTTATA-GGTCAAAGAAATGTATATGT-AA--A-CTTCTC------GAAAGAATCGT-----A-----T-TA---TTG-ATAATATCC-AATCATGCAATTCAC--AG-TTACTTTG-AGGATAG---A-AGAAAAT--TGTACTCAGAT-AGT-CACTTTT-TG---AAGAAGAAGAT--GGAAACA-TGAAAATG-TCTTT-TCCAAGCCAAAACC-CAAAATGT-GT-ATTATTC-CCGT-CTG-AAAATGA-G------TTATTATTTATTTctgagatcgaaa
gi|7 : aACAT-TA-----TCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-CCCATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGAAG
gi|9 : cactctattccacttatattgaaatcacttacattgaagtaaaaataaatccccagtcT-GA-TTACAAT--TT-C--TCT-CATGCAAAT-ACAAAC--AT-ACCTTAGA--C-ACTGTG-TG-ATAA-AAAATGGCTTGTGGATTTTGTACTCTTATCGCAGA-GCGCAGATC-TATC-T-TGG--CAAAGAACACTGTTGG-AAAAACTGTT-AAAGGTCCCGCGC-TGACATAAGTTGAATATTGTATTCTC-ACTCAGTTTT-GCGCT-CTTAACACAGA--GA-TATAGATAGGCATAAGA--TTCTGGG-AGTTAATAGA-AT--AC-TTTAT---TTTTC-CCAAG-AGTTAGGTTGGAGTAGTCAG-tgtcataacttaacca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTTAAGGAGGAATGCTAAGTCTTGATTTCCATGTTGGATAAGCATTACAGGTATTACAGGCATGTAGTGTCACACAAATGTGTCATTTTTGGTTCTGAGAATTATTTACGCTCAAGAAAATGAAGAGTGTTCTCAAATCCTTTCTGGGATTAGAAACACTCTCATATTATATTTTCAGCAATTTTATGATATTTTTGTAATTGATGATGTCATTCTTAGAACCTTTGTTGGTACAATCATAGAATAAGCGTTTCAAGAACAAGTGTGTTTTGTATAAATCTTCTTTA
Unaligned ( gi|19 ): CAGTCTGCTCCACTTATATTGAACACGTTATATTGAAGTAAAATAAATCACCAATAACAATA
Unaligned ( gi|20 ): AAAACACTCTCATATTTTTCAGAATTTCTGAATATTTTTAATTATGATGTATTATTAG
Alignments
lowQualScore : 11111 11111 11111 2222222222 1 1111 1 11 1111111 11 1 111111 1111 1 1111 1 1111 11111 11 111 1111 1111 111 111 222222 1111 111 11 1 1 1 1 11 3333333 111 111 5555555555555555555555 222222222222 1 111111 11111 222 111 111 111111 11 111 11 1111 3333333333333 22222 1111 1 444444444444444444 111 555555555555555555555555555555 22222222222 111 111
lowQualScore : 8 0 66 44444 0 77 00000 22222 66 5 777 1 3 4444444444 5 77 5 5 0 5 5 5 5 5 66 66 0 66 5 5 5 0000 0 11 5 5 66 5 6666666 5 5 5 5 11 5 2 7 5 1 222222 4444 555 5 0 5 66 5 0000 66 5 0 5 5 3 1 1 0 77 5 2222 5 5 5 5 44444 33 88 000 555 77 5 5 2222 5 5 77 2222 000 5 555 5 5 5 5 77 5 222222 77 5 5 5 6666 5 000 33 5 77 1 888 5 3 6 99 6 6 2 1 6 3 55 3 6 6 6 0000000 888 6 6 6 6 99 6 000 0000000000000000000000 888888888888 5 5 77 77 5 1 0 5 1 5 5 77 5 5 1 0 77 6 9999 6 6 6 99 6 999999 66666 6 555 6 6 99 6 6 6 6 111 6 222 6 6 99 6 111111 33 6 6 6 99 6 222 6 1 66 6 6 5555 6 7 1 5 1111111111111 66 5 888 55555 0000 5 0 77 5 77 0 1 5 999999999999999999 000 333333333333333333333333333333 55555555555 5 000 5 999 0 5 6 444
lowQualScore : . . .. ..... . .. ..... ..... .. . ... . . .......... . .. . . . . . . . . .. .. . .. . . . .... . .. . . .. . ....... . . . . .. . . . . . ...... .... ... . . . .. . .... .. . . . . . . . . .. . .... . . . . ..... .. .. ... ... .. . . .... . . .. .... ... . ... . . . . .. . ...... .. . . . .... . ... .. . .. . ... . . . .. . . . . . . .. . . . . ....... ... . . . . .. . ... ...................... ............ . . .. .. . . . . . . . .. . . . . .. . .... . . . .. . ...... ..... . ... . . .. . . . . ... . ... . . .. . ...... .. . . . .. . ... . . .. . . .... . . . . ............. .. . ... ..... .... . . .. . .. . . . .................. ... .............................. ........... . ... . ... . . . ...
lowQualScore : 0 7 33 33333 7 99 99999 44444 99 0 111 4 2 4444444444 0 99 7 0 0 7 7 7 0 0 99 99 1 99 0 0 0 6666 0 99 0 0 99 0 2222222 0 0 0 0 99 0 2 3 7 4 666666 7777 111 0 0 0 99 0 6666 99 0 0 0 0 2 4 4 1 66 7 1111 7 7 7 7 00000 66 33 000 999 99 7 7 1111 7 7 99 1111 000 7 999 7 7 7 7 99 7 111111 99 7 7 7 0000 7 000 66 7 99 4 000 7 3 7 22 7 7 5 7 7 3 00 5 7 7 7 8888888 333 7 7 7 7 22 7 000 7777777777777777777777 777777777777 7 7 99 99 7 4 1 7 4 7 7 99 7 7 4 1 99 7 3333 7 7 7 22 7 222222 77777 7 000 7 7 22 7 7 7 7 777 7 777 7 7 22 7 888888 33 7 7 7 22 7 555 7 7 00 7 7 5555 7 3 4 7 4444444444444 99 0 888 00000 6666 0 0 55 0 99 1 4 7 222222222222222222 000 333333333333333333333333333333 33333333333 7 000 7 444 1 7 7 000
consensus : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAA-AAAATGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACGAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTAT---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCACACTTAGAACC-TG-AAACA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCT-GCATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTAGAT-AAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
Reference ( family-3658 ) : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAA-AAAATGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACGAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTAT---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCACACTTAGAACC-TG-AAACA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCT-GCATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTAGAT-AAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
gi|1 : AGAAGGGATTTCCATACAA-TA-----TC-GACC-GCTTACT--GGTCGA--GGAATTTTTA---TTAAACAT-ATGAGAGTATATA-CAAAT-ATTTTGGTCG--------TAAAATTGCC-TTTCAC-G--T-GTATGGAGG-TCCTTAAACAAT-T-CGATTATATGT-AC-ATTTCCCC--TGAAGTAAAACACATGG--ATCCC-TATT-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TTACT-ATGTTTTTTTGAAA-TTTTAACTTGAA-G-ACGAAAAAAGGGA--CCAGGAGAATTTAT-GATTTG---TTGTT-CTGTCT-C-T-CAAATAA-AAAC--ATAA----AGC--CGACTGTG-TG-AAAA-TAAA-GGGCTG-GGA-ATAAT-CTCTT----CAAGAAC-CA-ATTCTA-A-T-TGGGAAAAC-AA---TGTT-TAAAAAAC--TTAAAA-ATCC----C-TTACA-AAG--GA----TATA---TCGACTGAATTTTGG-G-T-TTC-ACACAGGTAAT-TGTAG-----CAGAGAGATTTCTGGG-AGTTAATA-A-ATAGCC-TTTATTTGTTTT--CCAAA-A--TA--TTG--ATAGTCAG-AAAGTGGTAATCGAATATTGCACACTTAGAAGC-TGTAAACGCTTGTTAGCAGCTTATTTTGT-TGG---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCTGGCCTTAGAGGACCTGGG-AT---TCA----------------------ACA-AAA----------TGC-TGGATAAGG--TAAGTTC-AAAGTT-C-TTC-AGTGTT-GT-TTTACA-CTTGGTACC-CTAGCTGAAAGAGATTGGC--TTAAATATT-ATT--AATTTTTATTGAGTCAA-GAAATTTATATATCAA--ACCTTCTCTGAAAAGAAAAAAATGTTTTAAAGTATTT-TAAATTTG-ATAATGTTCAAATCATACA--TCACTTAA-CTACTATG-AG-ATAG---ATAAAAAAA--TGTACTCAAAT-AGTATCC--TT-TGAAAA--AAAAAGAT--GGAAACA-TGGAAATGTTCTTT-TCC-C--CATAATTCCATAAT-T-GTGATTATTCTCCGT-CTGAAAAATAATGTA-T--TTATTA-TTATTAGGAAAATATTATTATTAAGAAATATT--AT-TATTAGT---AGTGTATTA----TTTATTTATTTTTGCCT-CA-CCCCACC-GTATA--TATGCATAAAA-TCTA-TC
gi|10 : gttaaggagaaatgcctagtctctggatttttccatgtggacaaagcctatttaaagtaatacagctgtagtgtcacacataggtgtcatttggttctgaataaatacgggcaaaaaaatgaaagtgttctctaaatcctttttggataaaacaactctccatatttttcagaatttatgaatatttttgattcatgatgtattgtagaacctttgtggtaccagtcatagaattaaggttcaaaacaagtgtgtttttttataaatctcttaacgaACAT-TA-----TCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATA-AACAAATGATTTTTGTTG--------TAAAATTGCCCTTTCCATG--T-GTATGAGGG-TC-TTAAACA-T-T-CGA-TATATGTCCC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACCTTT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAAGG-ACA-AAAAAGGGAT-CCAGAAG
gi|11 : aaaaataaatccccagtcATGT-AC-AAT--CCG--TGAAGTCAAACACCTGG--AACCC-TC-C-TCAATT----AAAAGACC-TTTCCAACA---TGAA-TT--T-ATT-------AAGA-TTTC-ACTTAAA-A-AT--AACAAGGCGT-CCAGAAG-ATC-------TTG---T--TT-A--TGT-C-T-CATAT-A-CAGC--AA-A----AGCTAT-ATTGTATTG-AAAA-AAAAtgtcataacttaacaaa
gi|12 : TT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGTATAAAAGTCTA-TCANNNNNNNNNNNNNNNNNNNNNNNN---NNN-----N--------NNNNNN------NN--NNNNNNNNN--N-------NNNNN-G---AT-TGC-A-ATAAGAAAAAACAA-T---AAAAAAAAAA---GAAAAAAAGAAcnagagtaggcaattctattt
gi|13 : -AAATATT-------------TTTTTAT-TATTAGTTTAA-G---TTAAATTTTTATTCT-TTTGGCCTGTA-CC--ACA-GTATG--TATGTATAAA-GTATA-TCA------------------GTATGT---ATG-----TATGGCTACTGTATG------TAT-TTTGTCTGT--T-------TTGTA-T---GTCTGT-AGATAAAAATTAATAA-TA-At
gi|14 : aG-AAATATT-------------ATT--AG-TAGTAGT---A-T---TTA----TTTATTTA-TTTTGCCC-AA-CCCCACA-GTATG--TATGTGTAAACGTCTA-TCA------------------GTATAT---ATGAATGTC--------TGTATGTTTGTATG--TCTGCATG---T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-T
gi|15 : GAAAGGATT-TCATACAG-TACAATGTCTGACTTTTTTTTTTAAGTCAA--GGTGTTTTTA---TTG--CTT-ATGAGAGTAT--A-CAAATTACTT--AT-G--------TAAAGGTGCC-CTT
gi|16 : ---TCA----------------------ACAGAAACATAACAAACT-T-TAAA-AAGG--CAG--TC-AAATTCAC-TTCAAGTGTT-GT-TTT--A-CGTGGTACC-CTAGAT-AAAGATATTGGC--TTAAA
gi|17 : TATGT---ATG-----T--------T--ATG------T---TGTGTATGT--TTCGTAGTATGTAAG---AT-TGCCA-ATAAGAAAAAACAAGTA-AAAAAAAAAAA---
gi|18 : cTA--AAT-ATAAAAACATA-A-CAAATAAATTTGAT-GTACAATACTAAAATTCCC-TTTCACTGACT-ATATGAGGGATC-Taaaaaaaaaaaaaa
gi|2 : AGAAGGGATT-CCATA--A-CA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA---CAAATGATTTTGGT----------TAAAATTGCC-TTTCACTG--T-GTATGAGGG--C-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAA--CAAATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G--C--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAAAAAAATGGGCTGTGGA-ATTGT-CTTTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACAAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTAT---TTTC--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCA-AC-TAGAACC-TG-AAACA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCT-GCATTAGA-GACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTACAGTGTT-GT-TTT--A-CTTGGTACC-CTAGATAAAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTTATA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATA-AG-ATAG---A-AAAAAAT--TGCACTCAAAT-AGT-TCT--TT-TG---A--AAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTA-TC-TCGT-CTG-AAAATAATGTATT--TTATTA-TTA--TAG-AAATATT-------------ATT--AT-TATTAGT---A-----TTA----TTTATTTA-TTTTGCCT-CA--CCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAG-AAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
gi|3 : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAG-GTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GATTGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CC---TGAAGTAAAACACATG---ATCCC--A-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--TTATA-------AAAAATTTT-ACTTGA--G-AC--AAAA--GGAT-CCAG-AGAATTTAT-GA-TTG---T--TT-C--TCTTC-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TGAAAAA-AAAATGGGC-GTGGA-ATTGT-CTTTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACAAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-T-G-T-TTCAACACAGG--AT-TGTA------CATAGAA---TCTGGG-AGTTAATA-A-AA--CC--TTAT---TTTT--CCAAA-A--TA-GTTG--A-AGTCAG-AAA-T-GTA--C-AATA-TGCACAC-TAGAACC-TGAAAACA--TGTTA-CA-CTTATTTT-T-T------ATGTAAAGT---AATTTA-ACA-GAATCTGGTCG-GCATTAGGGAGCT--GG-AT---TCA----------------------ACAGAAA----------T-C-CGGA-AAGG--TAG--TC-AAA-TTACTTTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTA-AT-GAAGATA-TGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TAT--TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTA-A-AG-ATAG---A-AAAAAA---TGCACTCAAAT-AGT-TCC--TT-TG---A--AAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTACT--CCGT-CTG-AAAATAATGTA-T--TTATTA-TTA-TTAG-AAATATT-------------ATT--AT-TATTAGT---A-----TTA-----TTATTTA-TTTTGCCTCCA-CCCCACA-GTATA--TATGCATAAAAGTCTATTCA------------------GTATGT---ATGT----T--------TGTATG----------TCTGTATG---T-------ATGGA-GACAAT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGAtttaaac
gi|4 : aAAGGGATT-CCATAGAAATA-----T-TGACCTGCTTA----GGTCGAACGGAATTTT-AATATCA--CATCATGAGAGTATA-A--AAATGATTT-GGT-G--------TAAAATTGCC-TTTCACTG--TAGTA-GAGGG-TCCTTATACA-TGT-CGATTATATGT-AC-ATT--CCC--TGAAGTAAA-CACATGGGAATCCCCTA-T-TTTTGT----AAAAGACT-TTT-CAAAAGTTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGATTCCAGGAGAATTTATTGA-TTG---T--TTTC--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTGCTG-AAAA-AAAATGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TA-ATT-TGG--AAACAAA---TATT-T-AAAAAC--TT--AA-ATCC----T-TTACA-AAG--GG----TATA---T--ACG--ATTTT-G-G-T-TTCAACACAGG--ATATGTA------CATAGAA--TT---GG-AGTT-ATA-A-ATA-CC-TTTTA---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG---A-T-GTA--C--ATA-TGCACACTTAGAACC-TG-AAACAGTTGTTA-CA-CTTATTTT-TAT-G---ATAGT-ATGTA--AA-TTA-ACA-G-ATCTGTTCT-GCATTAGAGGACT--GG-AT---TC-----------------------ACAGAAA----------T-CTTGGA-AAGAGTTAG--TC-AAATTTAC-TTCAAGTGTT-GTCTTT--A-CTTGGTACC-CT-GAT-AAAGATATTGGCATTTAAATATTAA-T--AA--TTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TAT--TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAGAAAA-AAAAAAT--TGTACTCAAAT-AGT-TCC--TTCTG---A--AAAAAGATGAGAAAACATTGGAAATG-TCTTTCTCCAG--CATAATT-CATAAT-TGGT-ATTATT--CCGTGCTG-AAAATGATGTATTTATTATTA-TTATTTTG-AAATATT-------------ATT--ATATATTAGT---AGT---TTA----TTTATTTA-TTTTGCCT-CACCCCCACA-GTAT
gi|5 : aagt--TCT-T-T-CAAATCA-AAAC--AT-A----AGC--C-ACTGGG-TG-AAAA-AA--TGGGCTGTGGA-TTTGT-CTCTT----CAAG-CC-CA-ATT-TA-AATATGG--AAA-GAA---TGTT-T-AAAA-C--TT-AAA-ATCC----CATTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-TCTTCAACACAGG--AT-TGTA------TACAGAA--TTCTGGG-AGTTA-TA-A-A----C-TTTAT---TTTTTTCCAAAGA--TA-GTTG--ATA--TAGTAAA-T-GTA--C-A-TA-TGCACACATAGAAC--TA-CAAC--TTGT-A-CA-CTTATTTT-T-T-TTTTAATGTAATGT---AG-TAA-ACA-GATTCTGGTCT-GCATTAGAGGACT--GGTAT-----A----------------------ACAGAAA----------T-C-TGGA-A-GG--TAG--TCCAAATTTAC-TTCAAGTGTTTGT-TTT--AACTTGGTACTTCAAGAT-AAAGATATTGGC--TTAAATATC-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATA-CAATAA-CTTC-C------GAAAGA--TGT-----AGTATTT-TT---TTGGATAATGTTC-AATCATACA--TCAC-TAAACTAATATATAG-ATAG---A-AAAAAATATTGTACTCAAATGAGT-TCC--TT-TG---A--AAAAAGATG-GGAAAAA-TGGAAATG-TCTTT--CCAG---ATCATT--ATAAT---GT-AGTATCT-CCGT-CTG-AAAATAATGTATT--TAATTA-TTATTAGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTCA-TTTTTGCT-CA--CCCACATGTATAATTATGT-TAAAAGTCTA-TC-------------------GTATGTTGAATG-----TCTGCTG--TGTTTG------TATGTCTGTATGTACT-------A-GTA-G---AT-TGC---ATAAAGAAAAACAA-TATAAAAAAAAAAAATTGAAAA
gi|6 : tAGGC-TC-TTAAACA-C-TACAATTATGTGT-AC-ATT--TCCCGTGAA-TAAAACACGTGG--ATCCC-TA-TATTTGTTTAAAAAAAAACCCTT--CAAAA-TCTGAAATT--T-ATA-------AAAA-TTTC--CTTGAA-GGAC--AAAAGGG--T-CCAGGAGAATT-AT-GAGTTG---A--TT-AA-TCC-A-C-CAAA--A-TAACTGAG-G----AGC--C-ACTGTG-GG-AACA-AA---------CGG------T-CTCTT----CAAT-AC-CA-ATT-TA-A-TGTGGG-AAAAGAA---AGCT-T-AACAAC--TT-AAA-ATCC----C-CCACA-AAG---A----TATA---TC-ACT---CTTT-G-G-T-TTTAACACAGG--AT-TGTA------CATAGAA--TTCCGAGCAGTTAATA-GCAT--AGGTTTAC---TTTT--TCAAA-A--AATGTTG---TAGTCAG-AACCT-GTA--C-AATA-TGCAAACT-AGAACCCTG-AAACA-T-GTAA-CA--TTATCAT-T----------GTAATGTCTGAA-ATACACATAAATCTGATCT-GCATTAGAGGACT---G-ATTTTTCAGAAAAAAAAAAAAAAAAAAAAAACCGAAA------------C-TGTA-AAG---TAG--TC-AAATT-AT-GACAAGTGT--GT-TTT--A-CTTGGT-TC-CGAGAT-AAAGATACTGCC--TTAA-TATT-A-CTAAA-TTTTATA-GGTCAAAGAAATGTATATGT-AA--A-CTTCTC------GAAAGAATCGT-----A-----T-TA---TTG-ATAATATCC-AATCATGCAATTCAC--AG-TTACTTTG-AGGATAG---A-AGAAAAT--TGTACTCAGAT-AGT-CACTTTT-TG---AAGAAGAAGAT--GGAAACA-TGAAAATG-TCTTT-TCCAAGCCAAAACC-CAAAATGT-GT-ATTATTC-CCGT-CTG-AAAATGA-G------TTATTATTTATTTctgagatcgaaa
gi|7 : aACAT-TA-----TCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-CCCATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGAAG
gi|9 : cactctattccacttatattgaaatcacttacattgaagtaaaaataaatccccagtcT-GA-TTACAAT--TT-C--TCT-CATGCAAAT-ACAAAC--AT-ACCTTAGA--C-ACTGTG-TG-ATAA-AAAATGGCTTGTGGATTTTGTACTCTTATCGCAGA-GCGCAGATC-TATC-T-TGG--CAAAGAACACTGTTGG-AAAAACTGTT-AAAGGTCCCGCGC-TGACATAAGTTGAATATTGTATTCTC-ACTCAGTTTT-GCGCT-CTTAACACAGA--GA-TATAGATAGGCATAAGA--TTCTGGG-AGTTAATAGA-AT--AC-TTTAT---TTTTC-CCAAG-AGTTAGGTTGGAGTAGTCAG-tgtcataacttaacca
blockSeqs : . AA CAATG TA ACGGA AATA . C AA G T GTACAATAC C AC A A C . G A C C . CG GA C . A TAAA T TC G A . T . A . G G A T A T T G CAAT TC TC G C C TG . CCTT TA . T A A A T T TT A ATCG . G G . AATA G CA CAC GG TG . G CGCG A T TT ATAT TTC . CAG . C C C . A GATAGG . C G C TAC G . TT G GT T GAG T C . . . . C T C A AG T . . . TTTTT CTG T C T . . T TTT GAAAAAAAAAAAAAAAAAAAAA CATAACAAACT T . GT . C T T A T C . A T A AT A CTA . . A TA . . . A T G . AT . A T G AAA . TAT G . TT C AAG GA T . C GC . TG . C C G . TTTA T T A . . TT A TTA GT AATT . G CC T AT A T . TGA AATGTCTGTATGTTTGTATG TTTCGTAGT A ACA C AG G T ATT
blockSeqs : . T . . GGT TA . . A T T TG . . . . . . . . . . . . . . . . . C T . . . . . . . . . . . A T . . T AA CA . . . . . . . . C . . A T T A . . . . . . ATT . CA . T . . . . . . . . . . A . . . . . . . . . . . TC . . C . . G A . . . . . . C A . . A T . . . ATG A . . . . . . . . T . . . . . T . C . . . . . . . . T . . . . . . . . T . . . . . . . . . T . . . . A G . . . . . GT . T T . . TT . T A . . . . . T . . C C . . C . . . TATGGCTACTGTATGTAT TACT . . . CA . . .
blockSeqs : . G . . GGA A . . A A T G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G T . . T A C . . . . . . . . . . . A T T A . . . . . . ATG . CA . T . . . . . . . . . . A . . . . . . . . . . . AC . . . . . . A . . . . . . C T . . A T . . . TG . . . . . . . . . T . . . . . T . A . . . . . . . . T . . . . . . . . . . . . . . . . . . T . . . . A G . . . . . T . T C . . TT . T T . . . . . G . . . C . . A . . . TCTGCTGTGTTTGTATG TT . . . A . . .
blockSeqs : . A . . GGA A . . A G T G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . T C C . . . . . . . . . . . A T T A . . . . . . TCT . AG . T . . . . . . . . . . A . . . . . . . . . . . TA . . . . . . A . . . . . . A . . . A A . . . T . . . . . . . . . T . . . . . T . A . . . . . . . . T . . . . . . . . . . . . . . . . . . T . . . . A G . . . . . T . T . . . T . . G . . . . . T . . . C . . A . . . TTGTATGTA TT . . . A . . .
blockSeqs : A . . C A . . A G T G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . T C C . . . . . . . . . . . A T . T . . . . . . AT . AG . T . . . . . . . . . . A . . . . . . . . . . . TA . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . T . A . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . T . . . C . . A . . . TTTGTATG T . . . A . .
blockSeqs : T . . C A . . A G . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . A C T . . . . . . . . . . . . . . . . . . . . . AT . G . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . TTATGT T . . . . .
blockSeqs : . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : A**** ** A** G********* ** ** ******* ** T***** C*** ATT** ** CG T** A** ** ****** ** TN** *** ** A* ** T*********** ** ** T*** ****** ***** *** A***** G* T** C* TT** ************* T**** ****************** TTGTATGTNTGTATG*************** TT*********
originalCons : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAA-AAAATGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TA-A-T-TGG--AAACGAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC-TTTAT---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCACACTTAGAACC-TG-AAACA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCT-GCATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTAGAT-AAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATG-----T--------TGTATG------TA--TCTGTATGT--T-------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
finalCons : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTTA----TTA--CAT-ATGAGAGTATAA--CAAATGATTTTGGTG---------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTGT-----TTC---TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAA-AAAATGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TAATT--TGG--AAACGAA---TGTTT--AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACTA--TTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-ATN--C-TTTAT---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCACACTTAGAACC-TG-AAACA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AA-TTA-ACA-GAATCTGGTCT-GCATTAGAGGACT--GG-AT---TCA----------------------ACAGAAAT-----------C-TGGA-AAGG--TAG--TC-AAATTTAC-TTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTAGAT-AAAGATATTGGC--TTAAATATT-AT---AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-TCC--TT-TGA-----AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAATT--GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTGG-AAATATT-------------ATT--AT-TATTAGT---AT----TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------------GTATGT---ATGTTGTATGTNTGTATG---------------TCTGTATGTT---------ATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTTAAGGAGGAATGCTAAGTCTTGATTTCCATGTTGGATAAGCATTACAGGTATTACAGGCATGTAGTGTCACACAAATGTGTCATTTTTGGTTCTGAGAATTATTTACGCTCAAGAAAATGAAGAGTGTTCTCAAATCCTTTCTGGGATTAGAAACACTCTCATATTATATTTTCAGCAATTTTATGATATTTTTGTAATTGATGATGTCATTCTTAGAACCTTTGTTGGTACAATCATAGAATAAGCGTTTCAAGAACAAGTGTGTTTTGTATAAATCTTCTTTA
Unaligned ( gi|19 ): CAGTCTGCTCCACTTATATTGAACACGTTATATTGAAGTAAAATAAATCACCAATAACAATA
Unaligned ( gi|20 ): AAAACACTCTCATATTTTTCAGAATTTCTGAATATTTTTAATTATGATGTATTATTAG
Alignments
lowQualScore : 11111 11111 11111 2222222222 1 1111 1 11 1111111 11 1 111111 1111 1 1111 1 1111 111 1111 1111 111 111 222222 2222222 1111 11 1 1 11 11 3333333 111 111 5555555555555555555555 222222222222 1 111111 11111 222 111 111 111111 11 111 11 1111 3333333333333 22222 1111 1 333333333333 111 22222222222222 111 111 111
lowQualScore : 8 0 66 44444 0 77 00000 22222 66 5 777 1 3 4444444444 5 77 5 5 0 5 5 5 5 5 66 66 0 66 5 5 5 0000 0 11 5 5 66 5 6666666 5 5 5 5 11 5 2 7 5 1 222222 4444 555 5 0 5 66 5 0000 66 5 0 5 6666 1 0 77 5 2222 5 5 5 5 3 77 5 88 000 555 77 5 5 2222 5 5 77 2222 000 5 555 5 5 5 5 77 5 222222 77 5 5 5 3333333 0000 33 5 77 1 888 5 3 6 99 6 6 2 00 6 6 6 55 7 3 6 6 6 0000000 888 6 6 6 6 99 6 000 0000000000000000000000 888888888888 5 5 77 77 5 1 0 5 1 5 5 77 5 5 1 0 77 6 9999 6 6 6 99 6 999999 66666 6 555 6 6 99 6 6 6 6 111 6 222 6 6 99 6 111111 33 6 6 6 99 6 222 6 1 66 6 6 5555 6 7 1 5 1111111111111 66 5 888 55555 0000 5 0 77 5 77 0 1 5 444444444444 000 99999999999999 2 3 2 5 444 5 000 5 999 0 5 6 444
lowQualScore : . . .. ..... . .. ..... ..... .. . ... . . .......... . .. . . . . . . . . .. .. . .. . . . .... . .. . . .. . ....... . . . . .. . . . . . ...... .... ... . . . .. . .... .. . . . .... . . .. . .... . . . . . .. . .. ... ... .. . . .... . . .. .... ... . ... . . . . .. . ...... .. . . . ....... .... .. . .. . ... . . . .. . . . .. . . . .. . . . . . ....... ... . . . . .. . ... ...................... ............ . . .. .. . . . . . . . .. . . . . .. . .... . . . .. . ...... ..... . ... . . .. . . . . ... . ... . . .. . ...... .. . . . .. . ... . . .. . . .... . . . . ............. .. . ... ..... .... . . .. . .. . . . ............ ... .............. . . . . ... . ... . ... . . . ...
lowQualScore : 0 7 33 33333 7 99 99999 44444 99 0 111 4 2 4444444444 0 99 7 0 0 7 7 7 0 0 99 99 1 99 0 0 0 6666 0 99 0 0 99 0 2222222 0 0 0 0 99 0 2 3 7 4 666666 7777 111 0 0 0 99 0 6666 99 0 0 0 7777 4 1 66 7 1111 7 7 7 7 9 11 7 33 000 999 99 7 7 1111 7 7 99 1111 000 7 999 7 7 7 7 99 7 111111 99 7 7 7 0000000 1111 66 7 99 4 000 7 3 7 22 7 7 5 88 7 7 7 00 3 5 7 7 7 8888888 333 7 7 7 7 22 7 000 7777777777777777777777 777777777777 7 7 99 99 7 4 1 7 4 7 7 99 7 7 4 1 99 7 3333 7 7 7 22 7 222222 77777 7 000 7 7 22 7 7 7 7 777 7 777 7 7 22 7 888888 33 7 7 7 22 7 555 7 7 00 7 7 5555 7 3 4 7 4444444444444 99 0 888 00000 6666 0 0 55 0 99 1 4 7 222222222222 000 00000000000000 3 0 3 7 333 7 000 7 444 1 7 7 000
consensus : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAAAAAA-TGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TAATT-TGG-AAACGAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--AC--TTTAT---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCACACTTAGAACC-TG-AAA-CA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AATT-A-ACA-GAATCTGGTCT-GCATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTAGAT-AAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------GTATGT---ATG-----T-TG--TA-TGTNTGTATGTCT-GTATGT--TATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
Reference ( family-3658 ) : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAAAAAA-TGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TAATT-TGG-AAACGAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--NC--TTTAT---TTTT--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCACACTTAGAACC-TG-AAA-CA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AATT-A-ACA-GAATCTGGTCT-GCATTAGAGGACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTAGAT-AAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAG---A-AAAAAAT--TGTACTCAAAT-AGT-TCC--TT-TG---A--AAAAAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTATTC-CCGT-CTG-AAAATAATGTATT--TTATTA-TTATTTGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------GTATGT---ATG-----T-TG--TA-TGTNTGTATGTCT-GTATGT--TATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
gi|1 : AGAAGGGATTTCCATACAA-TA-----TC-GACC-GCTTACT--GGTCGA--GGAATTTTTA---TTAAACAT-ATGAGAGTATATA-CAAAT-ATTTTGGTCG--------TAAAATTGCC-TTTCAC-G--T-GTATGGAGG-TCCTTAAACAAT-T-CGATTATATGT-AC-ATTTCCCC--TGAAGTAAAACACATGG--ATCCC-TATT-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TTACT-ATGTTTTTTTGAAA-TTTTAACTTGAA-G-ACGAAAAAAGGGA--CCAGGAGAATTTAT-GATTTG---TTGTT-CTGTCT-C-T-CAAATAA-AAAC--ATAA----AGC--CGACTGTG-TG-AAAATAAA--GGGCTG-GGA-ATAAT-CTCTT----CAAGAAC-CA-ATTCTAATT-GGG-AAAACAA---TGTT-TAAAAAAC--TTAAAA-ATCC----C-TTACA-AAG--GA----TATA---TCGACTGAATTTTGG-G-T-TTC-ACACAGGTAAT-TGTAG-----CAGAGAGATTTCTGGG-AGTTAATA-A-ATAGCC--TTTATTTGTTTT--CCAAA-A--TA--TTG--ATAGTCAG-AAAGTGGTAATCGAATATTGCACACTTAGAAGC-TGTAAA-CGCTTGTTAGCAGCTTATTTTGT-TGG---AATGTAATGT---AATT-A-ACA-GAATCTGGTCTGGCCTTAGAGGACCTGGG-AT---TCA----------------------ACA-AAA----------TGC-TGGATAAGG--TAAGTTC-AAAGTT-C-TTC-AGTGTT-GT-TTTACA-CTTGGTACC-CTAGCTGAAAGAGATTGGC--TTAAATATT-ATT--AATTTTTATTGAGTCAA-GAAATTTATATATCAA--ACCTTCTCTGAAAAGAAAAAAATGTTTTAAAGTATTT-TAAATTTG-ATAATGTTCAAATCATACA--TCACTTAA-CTACTATG-AG-ATAG---ATAAAAAAA--TGTACTCAAAT-AGTATCC--TT-TGAAAA--AAAAAGAT--GGAAACA-TGGAAATGTTCTTT-TCC-C--CATAATTCCATAAT-T-GTGATTATTCTCCGT-CTGAAAAATAATGTA-T--TTATTA-TTATTAGGAAAATATTATTATTAAGAAATATT--AT-TATTAGT---AGTGTATTA----TTTATTTATTTTTGCCT-CA-CCCCACC-GTATA--TATGCATAAAA-TCTA-TC
gi|10 : gttaaggagaaatgcctagtctctggatttttccatgtggacaaagcctatttaaagtaatacagctgtagtgtcacacataggtgtcatttggttctgaataaatacgggcaaaaaaatgaaagtgttctctaaatcctttttggataaaacaactctccatatttttcagaatttatgaatatttttgattcatgatgtattgtagaacctttgtggtaccagtcatagaattaaggttcaaaacaagtgtgtttttttataaatctcttaacgaACAT-TA-----TCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATA-AACAAATGATTTTTGTTG--------TAAAATTGCCCTTTCCATG--T-GTATGAGGG-TC-TTAAACA-T-T-CGA-TATATGTCCC-ATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACCTTT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAAGG-ACA-AAAAAGGGAT-CCAGAAG
gi|11 : aaaaataaatccccagtcATGT-AC-AAT--CCG--TGAAGTCAAACACCTGG--AACCC-TC-C-TCAATT----AAAAGACC-TTTCCAACA---TGAA-TT--T-ATT-------AAGA-TTTC-ACTTAAA-A-AT--AACAAGGCGT-CCAGAAG-ATC-------TTG---T--TT-A--TGT-C-T-CATAT-A-CAGC--AA-A----AGCTAT-ATTGTATTG-AAAAAAAA-tgtcataacttaacaaa
gi|12 : TT--AT-TATTAGT---A-T---TTA----TTTATTTA-TTTTGCCT-CA-CCCCACA-GTATA--TATGTATAAAAGTCTA-TCANNNNNNNNNNNNNNNNNN---NNN-----N-NN--NN-NNNNNNNNNNNNN-NNNNNN--NNNNNN-G---AT-TGC-A-ATAAGAAAAAACAA-T---AAAAAAAAAA---GAAAAAAAGAAcnagagtaggcaattctattt
gi|13 : -AAATATT-------------TTTTTAT-TATTAGTTTAA-G---TTAAATTTTTATTCT-TTTGGCCTGTA-CC--ACA-GTATG--TATGTATAAA-GTATA-TCA------------GTATGT---ATG-----TATGGCTACTGTATGTAT-TTT-GTCTGT--TTTGTA-T---GTCTGT-AGATAAAAATTAATAA-TA-At
gi|14 : aG-AAATATT-------------ATT--AG-TAGTAGT---A-T---TTA----TTTATTTA-TTTTGCCC-AA-CCCCACA-GTATG--TATGTGTAAACGTCTA-TCA------------GTATAT---ATGAATGTC-TG--TA-TGTTTGTATGTCT-GCATG---TATGTA-G---AT-TGC-A-ATAAGAAAAAACAA-T
gi|15 : GAAAGGATT-TCATACAG-TACAATGTCTGACTTTTTTTTTTAAGTCAA--GGTGTTTTTA---TTG--CTT-ATGAGAGTAT--A-CAAATTACTT--AT-G--------TAAAGGTGCC-CTT
gi|16 : ---TCA----------------------ACAGAAACATAACAAACT-T-TAAA-AAGG--CAG--TC-AAATTCAC-TTCAAGTGTT-GT-TTT--A-CGTGGTACC-CTAGAT-AAAGATATTGGC--TTAAA
gi|17 : TATGT---ATG-----T-TA--TG-T-TGTGTATGTTTCGTA-GT---ATGTAAG---AT-TGCCA-ATAAGAAAAAACAAGTA-AAAAAAAAAAA---
gi|18 : cTA--AAT-ATAAAAACATA-A-CAAATAAATTTGAT-GTACAATACTAAAATTCCC-TTTCACTGACT-ATATGAGGGATC-Taaaaaaaaaaaaaa
gi|2 : AGAAGGGATT-CCATA--A-CA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAGAGTATA---CAAATGATTTTGGT----------TAAAATTGCC-TTTCACTG--T-GTATGAGGG--C-TTAAACA-T-T-CGATTATATGT-AC-ATT--CCC--TGAAGTAA--CAAATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G--C--AAAAAGGGAT-CCAGGAGAATTTAT-GA-TTG---T--TT-C--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TGAAAAAAAAA-TGGGCTGTGGA-ATTGT-CTTTT----CAAG-AC-CA-ATT-TAA-T-TGG-AAACAAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--TTCTGGG-AGTTAATA-A-AT--CC--TTTAT---TTTC--CCAAA-A--TA-GTTG--ATAGTCAG-AAA-T-GTA--C-AATA-TGCA-AC-TAGAACC-TG-AAA-CA-TTGTTA-CA-CTTATTTT-T-T-G---AATGTAATGT---AATT-A-ACA-GAATCTGGTCT-GCATTAGA-GACT--GG-AT---TCA----------------------ACAGAAA----------T-C-TGGA-AAGG--TAG--TC-AAATTTAC-TTACAGTGTT-GT-TTT--A-CTTGGTACC-CTAGATAAAAGATATTGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTTATA---TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATA-AG-ATAG---A-AAAAAAT--TGCACTCAAAT-AGT-TCT--TT-TG---A--AAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTA-TC-TCGT-CTG-AAAATAATGTATT--TTATTA-TTA--TAG-AAATATT-------------ATT--AT-TATTAGT---A-----TTA----TTTATTTA-TTTTGCCT-CA--CCCACA-GTATA--TATGCATAAAAGTCTA-TCA------------GTATGT---ATG-----T-TG--TA-TGTA------TCT-GTATGT--TATGTA-G---AT-TGC-A-ATAAG-AAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGA
gi|3 : AGAAGGGATT-CCATACAA-TA-----TCTGACCTGCTTACT--GGTCGA--GGAATTTT-A---TTA--CAT-ATGAG-GTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GATTGAGGG-TC-TTAAACA-T-T-CGATTATATGT-AC-ATT--CC---TGAAGTAAAACACATG---ATCCC--A-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--TTATA-------AAAAATTTT-ACTTGA--G-AC--AAAA--GGAT-CCAG-AGAATTTAT-GA-TTG---T--TT-C--TCTTC-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTG-TG-AAAAAAAAATGGGC-GTGGA-ATTGT-CTTTT----CAAG-AC-CA-ATT-TAATT--GG-AAACAAA---TGTT-T-AAAAAC--TT-AAA-ATCC----C-TTACA-AAG--GA----TATA---TC-ACT--ATTTT-T-G-T-TTCAACACAGG--AT-TGTA------CATAGAA--T-CTGGG-AGTTAATA-A-A---AC--CTTAT---TTTT--CCAAA-A--TA-GTTG--A-AGTCAG-AAA-T-GTA--C-AATA-TGCACACT-AGAACC-TG-AAAACA-T-GTTA-CA-CTTATTTT-T-T------ATGTAAAGT---AATTTA-ACA-GAATCTGGTCG-GCATTAGGGAGCT--GG-AT---TCA----------------------ACAGAAA----------T-C-CGGA-AAGG--TAG--TC-AAA-TTACTTTCAAGTGTT-GT-TTT--A-CTTGGTACC-CTA-AT-GAAGATA-TGGC--TTAAATATT-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TAT--TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTA-A-AG-ATAG---A-AAAAAA---TGCACTCAAAT-AGT-TCC--TT-TG---A--AAACAGATG-GGAAACA-TGGAAATG-TCTTT-TCCAG--CATAATT-CATAAT-T-GT-ATTACT--CCGT-CTG-AAAATAATGTA-T--TTATTA-TTA-TTAG-AAATATT-------------ATT--AT-TATTAGT---A-----TTA-----TTATTTA-TTTTGCCTCCA-CCCCACA-GTATA--TATGCATAAAAGTCTATTCA------------GTATGT---ATG-----T-T----------TGTATGTCT-GTATG---TATGGA-GACAAT-TGC-A-ATAAGAAAAAACAA-TA-AAAAAAAAAAA---GAAAAAAAAAAAAGAtttaaac
gi|4 : aAAGGGATT-CCATAGAAATA-----T-TGACCTGCTTA----GGTCGAACGGAATTTT-AATATCA--CATCATGAGAGTATA-A--AAATGATTT-GGT-G--------TAAAATTGCC-TTTCACTG--TAGTA-GAGGG-TCCTTATACA-TGT-CGATTATATGT-AC-ATT--CCC--TGAAGTAAA-CACATGGGAATCCCCTA-T-TTTTGT----AAAAGACT-TTT-CAAAAGTTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGATTCCAGGAGAATTTATTGA-TTG---T--TTTC--TCT-C-T-CAAAT-A-AAAC--AT-A----AGC--C-ACTGTGCTG-AAAAAAAA-TGGGCTGTGGA-ATTGT-CTCTT----CAAG-AC-CA-ATT-TAATT-TGG-AAACAAA---TATT-T-AAAAAC--TT--AA-ATCC----T-TTACA-AAG--GG----TATA---T--ACG--ATTTT-G-G-T-TTCAACACAGG--ATATGTA------CATAGAA--TT---GG-AGTT-ATA-A-AT--ACCTTTTA----TTTT--CCAAA-A--TA-GTTG--ATAGTCAG---A-T-GTA--C--ATA-TGCACACTTAGAACC-TG-AAA-CAGTTGTTA-CA-CTTATTTT-TAT-G---ATAGT-ATGTA--AATT-A-ACA-G-ATCTGTTCT-GCATTAGAGGACT--GG-AT---TC-----------------------ACAGAAA----------T-CTTGGA-AAGAGTTAG--TC-AAATTTAC-TTCAAGTGTT-GTCTTT--A-CTTGGTACC-CT-GAT-AAAGATATTGGCATTTAAATATTAA-T--AA--TTTATT-AGTCAA-GAAATTTATATATCAA--A-CTTCTC------GAAAGAAATGT-----AGTATTT-TAT--TTG-ATAATGTTC-AATCATACA--TCAC-TAA-CTACTATG-AG-ATAGAAAA-AAAAAAT--TGTACTCAAAT-AGT-TCC--TTCTG---A--AAAAAGATGAGAAAACATTGGAAATG-TCTTTCTCCAG--CATAATT-CATAAT-TGGT-ATTATT--CCGTGCTG-AAAATGATGTATTTATTATTA-TTATTTTG-AAATATT-------------ATT--ATATATTAGT---AGT---TTA----TTTATTTA-TTTTGCCT-CACCCCCACA-GTAT
gi|5 : aagt--TCT-T-T-CAAATCA-AAAC--AT-A----AGC--C-ACTGGG-TG-AAAAAA---TGGGCTGTGGA-TTTGT-CTCTT----CAAG-CC-CA-ATT-TAAATATGG-AAA-GAA---TGTT-T-AAAA-C--TT-AAA-ATCC----CATTACA-AAG--GA----TATA---TC-ACT--ATTTT-G-G-TCTTCAACACAGG--AT-TGTA------TACAGAA--TTCTGGG-AGTTA-TA-A-A----C--TTTAT---TTTTTTCCAAAGA--TA-GTTG--ATA--TAGTAAA-T-GTA--C-A-TA-TGCACACATAGAAC--TA-CAA-C--TTGT-A-CA-CTTATTTT-T-T-TTTTAATGTAATGT---AGTA-A-ACA-GATTCTGGTCT-GCATTAGAGGACT--GGTAT-----A----------------------ACAGAAA----------T-C-TGGA-A-GG--TAG--TCCAAATTTAC-TTCAAGTGTTTGT-TTT--AACTTGGTACTTCAAGAT-AAAGATATTGGC--TTAAATATC-A-T--AA-TTTTATT-AGTCAA-GAAATTTATATA-CAATAA-CTTC-C------GAAAGA--TGT-----AGTATTT-TT---TTGGATAATGTTC-AATCATACA--TCAC-TAAACTAATATATAG-ATAG---A-AAAAAATATTGTACTCAAATGAGT-TCC--TT-TG---A--AAAAAGATG-GGAAAAA-TGGAAATG-TCTTT--CCAG---ATCATT--ATAAT---GT-AGTATCT-CCGT-CTG-AAAATAATGTATT--TAATTA-TTATTAGG-AAATATT-------------ATT--AT-TATTAGT---A-T---TTA----TTTATTCA-TTTTTGCT-CA--CCCACATGTATAATTATGT-TAAAAGTCTA-TC-------------GTATGTTGAATG-----TCTGC-TG-TGTTTGTATGTCT-GTATGTACTA-GTA-G---AT-TGC---ATAAAGAAAAACAA-TATAAAAAAAAAAAATTGAAAA
gi|6 : tAGGC-TC-TTAAACA-C-TACAATTATGTGT-AC-ATT--TCCCGTGAA-TAAAACACGTGG--ATCCC-TA-TATTTGTTTAAAAAAAAACCCTT--CAAAA-TCTGAAATT--T-ATA-------AAAA-TTTC--CTTGAA-GGAC--AAAAGGG--T-CCAGGAGAATT-AT-GAGTTG---A--TT-AA-TCC-A-C-CAAA--A-TAACTGAG-G----AGC--C-ACTGTG-GG-AACAAA----------CGG------T-CTCTT----CAAT-AC-CA-ATT-TAATG-TGGGAAAAGAA---AGCT-T-AACAAC--TT-AAA-ATCC----C-CCACA-AAG---A----TATA---TC-ACT---CTTT-G-G-T-TTTAACACAGG--AT-TGTA------CATAGAA--TTCCGAGCAGTTAATA-GCAT--AGG-TTTAC---TTTT--TCAAA-A--AATGTTG---TAGTCAG-AACCT-GTA--C-AATA-TGCAAACT-AGAACCCTG-AAA-CA-T-GTAA-CA--TTATCAT-T----------GTAATGTCTGAAAT-ACACATAAATCTGATCT-GCATTAGAGGACT---G-ATTTTTCAGAAAAAAAAAAAAAAAAAAAAAACCGAAA------------C-TGTA-AAG---TAG--TC-AAATT-AT-GACAAGTGT--GT-TTT--A-CTTGGT-TC-CGAGAT-AAAGATACTGCC--TTAA-TATT-A-CTAAA-TTTTATA-GGTCAAAGAAATGTATATGT-AA--A-CTTCTC------GAAAGAATCGT-----A-----T-TA---TTG-ATAATATCC-AATCATGCAATTCAC--AG-TTACTTTG-AGGATAG---A-AGAAAAT--TGTACTCAGAT-AGT-CACTTTT-TG---AAGAAGAAGAT--GGAAACA-TGAAAATG-TCTTT-TCCAAGCCAAAACC-CAAAATGT-GT-ATTATTC-CCGT-CTG-AAAATGA-G------TTATTATTTATTTctgagatcgaaa
gi|7 : aACAT-TA-----TCTGACGTCCTTACT--GGTCAA--C---TTTT-A---TAA--CAT-ATGAGAGTATA-A-CAAATGATTTTGGT-G--------TAAAATTGCC-TTTCACTG--T-GTATGAGGG-TC-TTAAACA-T-T-CGATTATATGT-CCCATT--CCC--TGAAGTAAAACACATGG--ATCCC-TA-T-TTTGTT----AAAAGACC-TT--CAAAA-TTTGGA-TT--T-ATA-------AAAA-TTTT-ACTTGAA-G-AC--AAAAAGGGAT-CCAGAAG
gi|9 : cactctattccacttatattgaaatcacttacattgaagtaaaaataaatccccagtcT-GA-TTACAAT--TT-C--TCT-CATGCAAAT-ACAAAC--AT-ACCTTAGA--C-ACTGTG-TG-ATAAAAAA-TGGCTTGTGGATTTTGTACTCTTATCGCAGA-GCGCAGATC-TATCT-TGG-CAAAGAACACTGTTGG-AAAAACTGTT-AAAGGTCCCGCGC-TGACATAAGTTGAATATTGTATTCTC-ACTCAGTTTT-GCGCT-CTTAACACAGA--GA-TATAGATAGGCATAAGA--TTCTGGG-AGTTAATAGA-AT--AC--TTTAT---TTTTC-CCAAG-AGTTAGGTTGGAGTAGTCAG-tgtcataacttaacca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): GGTTAAGGAGGAATGCTAAGTCTTGATTTCCATGTTGGATAAGCATTACAGGTATTACAGGCATGTAGTGTCACACAAATGTGTCATTTTTGGTTCTGAGAATTATTTACGCTCAAGAAAATGAAGAGTGTTCTCAAATCCTTTCTGGGATTAGAAACACTCTCATATTATATTTTCAGCAATTTTATGATATTTTTGTAATTGATGATGTCATTCTTAGAACCTTTGTTGGTACAATCATAGAATAAGCGTTTCAAGAACAAGTGTGTTTTGTATAAATCTTCTTTA
Unaligned ( gi|19 ): CAGTCTGCTCCACTTATATTGAACACGTTATATTGAAGTAAAATAAATCACCAATAACAATA
Unaligned ( gi|20 ): AAAACACTCTCATATTTTTCAGAATTTCTGAATATTTTTAATTATGATGTATTATTAG