lowQualScore : 4444 2 1111 2 22 2 1 22222 2222222222222222 222222222222222 11111 1111 1 111 11 2222222222 1 33333333333333333333333333333333333333333333 1111 11111 111 1 2 11111 11 1111111 11 1 222 111 88888888888888888888888888888888888888888888888888888888888888888888 444444444444444 11 1 1 111 1 4444444444444444444444444
lowQualScore : 2222 0 4 4 8888 0 22 0 4 4 5 6 1 0 4 8 55555 8888888888888888 3 1 6 444444444444444 1 5 5 99999 5 5 1111 66 66 2 8888 5 5 111 1 5 6 00 5 1 2222222222 7 4 5 0 66666666666666666666666666666666666666666666 66 5 77 4 4 4 4 9999 66666 1 333 5 2 99 0 5 55555 88 5 5 0 2 5 66 5 5 1111111 5 22 1 5 222 6 5 333 8 6 9 6 88 55555555555555555555555555555555555555555555555555555555555555555555 6 1 1 2 99 1 111111111111111 2 2 0 22 0 0 777 0 8 8888888888888888888888888 0 7
lowQualScore : .... . . . .... . .. . . . . . . . . . ..... ................ . . . ............... . . . ..... . . .... .. .. . .... . . ... . . . .. . . .......... . . . . ............................................ .. . .. . . . . .... ..... . ... . . .. . . ..... .. . . . . . .. . . ....... . .. . . ... . . ... . . . . .. .................................................................... . . . . .. . ............... . . . .. . . ... . . ......................... . .
lowQualScore : 5555 0 0 0 0000 0 55 0 0 0 0 7 0 7 0 3 00000 2222222222222222 3 5 7 777777777777777 5 7 7 00000 0 0 0000 99 99 8 4444 5 0 000 7 7 4 33 7 7 4444444444 1 3 0 0 22222222222222222222222222222222222222222222 99 1 44 8 4 4 4 7777 22222 2 555 0 2 11 1 0 55555 22 0 7 8 2 0 99 0 6 1111111 0 88 4 7 444 0 2 444 0 4 3 7 55 22222222222222222222222222222222222222222222222222222222222222222222 7 8 0 5 00 4 888888888888888 5 2 2 55 0 5 555 0 8 2222222222222222222222222 7 0
consensus : NGATGTCTATAGCAGTATTCGGTTGANAGNGGCGNAGTGAATTCTNGTAGGAGGANGCNAAACAGTAAAGTTGACGAACGGATAANATATGATTAGA-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TANACTATTTACCACA-CA-T-C---GG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TTTATT-TGGG--TCTGTGGTATAACACC-ANGGC-GT-TGGTTC-----A--TCATCCGGGTTCCTGCAGTAGT-TT-TC--CGGTAGA-T-CTGCCCCTA--CGGTGT--------G-TGG--G--TGAGG-NGATTGGG-AC-G-CCCAG-N-CCTGGCAAGT-C-CTCCCGGA--TTTC-GTCACGTT-GAT-T-TTCC-C-N-TGTAA-TC-CCA-TCCAAAAGT-CGTT--CTTT-TGCANTCAG-CAA--CCTC-GTCA-NAATCTG-C-AAAT-AAAGAACGGCA-TTTCG-ATCAGCACCATT-GTCGA-------AA-T-TAACA----TNTAC-GATCA------CAC---CA-T--CGT-GAAC-T--------ATAC-AATCAAAATCAACACTNTCGTNNATCTT---CATNC-A----GATCAGCGCCNTCGTCAGGAN-CTA-CAAAA---TG-AGTAACA--ATG-TTA---AC-AA--TATATATATTTTGTCAGA
Reference ( gi|3 ) : TGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAG-AGAAAGTAAAACAGTAAAGTTGACGAACGAACAATAAATGATTAGA-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TAAAATATTTACCACA-CA-T-T---GG-AAT-ATCGCA-C--AA--TT--CAAGTCG--TATATT-TGGA--TCTGTGGTATAACACC-AAGGT-GT-TGGTTC-----A--TTATCCGGGTTCCTGCAGTAGT-TT-TC--AGATTGA-T-CTGCCCCTA--TGGTGT--------G-TGA--G--TGGGG-TGATTGAG-AC-G-CCCAG-T-TCTGACAAAC-T-CTCCCAGA--TTTC-GTCAAGTT-AATGT-TTCC-C-C-TGTAT-TC-CCA-TCCAAAAAT-TGTT--CTTT-TGCAATCAG-TAA--TCTC-GTCA-AAATCTG-C-AAATGGAGGAATGGTA-TTTCG-ATCAGCACCAGT-GTTGA-------AG-T-TAACA----TGTAT-GATCAC-----CAC---CA-T--CGT-GAAT-T--------ATAC-AATTAAAATCAATACTCTCGTCCATCTT---CATTC-A----GATCAGCACCCTTGTCAGGAG-CTA-CATAA---TG-AAGAACA--ATG-TTA---AC-AA--TA-AT-TACTTTTTCAGA
gi|11 : GATGTCTATAGCAGTATT-GGTTGAAAGTGGTGCAGTGA-TTCTT-TAG-AAGATGTAAAA-A--AAAGTTGACAAACAGATAACATATGATTAGA-----TAAGC----AA-TT------TAAACC-TGA---------TAGCCTATGTACCTCA-TA-T-G---GG-AAC-ATCGCA-T--AA--TTTCCAA--CG--TTTGAT-TGGG--TCTGTGGTA
gi|1 : ATGTTTAT----GTATTCGGTTAATAGAG-CTGAGTGAATTCTGGTAGGAGAAAGCTAAACAGTAAAGTTGACGATCGAACAATAAATGATTAGA-----AAAGC--TTAATTT-GACCTTATATCGTGA-GATGAACATAAAATATTTACCACA-CA-TAT---GGAAATAATCGCA-C--AA--TT--CAAGTCG--TATA-T-TGGAACTCTGTGGTATAACA-C-AAGGT-GT-TGG-TC-----A--TTATCCGGGTTCCTGCAGTAGT-TTATC--AGA-TGATT-CTGCCCCCT--TGG-AT--------G-TTG--G--TGGGA-TGATTGAGAAC-G-CCCAG-TATCTGACAAAC-TCCTCCCAGATTTTTC-GTCAAGTT-AATGTCTTCCGC-C-TGTATATCGCCATTCCAAAAAT-TGTT--C-TT-TGCACTCGGTTAATTTTTC-GTCA-AAATCTGCC-AAATGGGAGAATGGTATTTTCGTTTCAGCACCAGT-G-TGA-------A--T-TAACAG---TGTATGGATCAC-----CAC---CA-TTCCGT-GAATAT--------ATACAAATTAAAATCAATACTCTCGTCCATCTT---CATTCAA----GATCAGCACCCTTGTCAGGAG-CTA-CATCACATTGAAAGAACAG-ATGATTA---AC-AAACTA-A--TACTTTTTCAG
gi|8 : AGTAACGTTGACGAACGGATAAGATATGATTACATATGTAGATCATTTCA-TTCGACCTGATAGC-TGA-GATAA---------------CATA-AA-T-C---GG-AAT-ATCGCA-T--AA--CT--CATATCG--TTTATC-TGGG--TCTGTGGTATATCACC-ATGGC-GT-TGGTTC-----A--TCACTCGGGTTCCTACAGTAGT-TT-TC--CGGTAGA-T-Cggcaaaaaa
gi|4 : A-----AAAGC--TTA--TT-GAG---------TGA-G-TGAAC-TATAAAACTTACCACAACA-T-TCGCGG-AAT-GTCGCAAC--AAATCT--CCAGTCGGTTTTGTTATGGG--TCTGTGGTATA-CACCGAAGGCCGT-TGGATCGGGGAA--TCA--CGGGTTC-TACAGTAGTATT-TC--TGGT-GA-T-AGGTCC-TA--CGCTGT--------G-GGG--G--TGAGGATGTTTGGG-ACCG-CCCAGGC-CCTGGCAGGT-C-CTTCCGCT--TTTC-GTCACGTTCGAT-T-TTCC-C-GATGTAA-TT-CCA-TCCATGAGTACGAT--CTTTGTGCAATCAG-CAA--CCTC-GCCAGAAGTCTG-T-AAA
gi|5 : gtgatcctaagtggaagttaaaaaaacaaaggtgcaatccatgtgcctacagatgagctcatctTTAGATC-TGAAGCTGAAA-TAAACTATCTACCACA-GAAT-C---GG-AAT-AT-G-A-G--AA--TT--CCA--CG--TTTCAT-TGGG--TTTGTAGTGTAACATC-AGGGA-GCCTGGTTC-----AACTTA--CGGGTTC-TGCAGTAGT-TTGTCGTAGAT-G----CTGCCCT------GTGT--------GGTGACTA--TGAGG-T-ATTGAG-AC-G-CC-AG-A-CCTGACACGT-C-CTCCCTG---TTTCAGTCACGTT-GAT-T-TTAC-C-T-TGT----T-CCA-TCCAAGAGT-TGTTGTTTTT-TGCATTCAG-CAA--CCTC-GTAA-GGAT-TG-C-GGAAAAAAGAAAGGCA-TTTCG-ATCAGGGCCATT-GTCGA-------TGATATAGCA----TTTA---ACCATCTTCACAC---TATT--CAA-GA---T--------ATAC-AACGAAAATCAataaacaacaccatttcaaatacaataaagcaaaggtccacatatgtatatatacagaaatgaaaaatttcaattgcaaatctaacaatgaacatcaac
gi|2 : ATATG-TGA-GGCGAGC-TATACAATTTACCACA-CA-T-A---GG-GAT-ATCGCA-C--AT--CT--CAAATCG--TACACC-TGGG--TCTGTGGTATAACACC-ATGGC-GT-TGGTTC-----A--GAATCCGGATTTCTACAGTAGT-TT-CC--CGGTAAA-TACT-TCCCTACTTCGTGT--------T-T----G--TGAGG-TGATTGGG-AC-G-CCCAG-G-CCTGGCAAGT-C-CTCCCAGA--TTCT-GTCACGCT-GATTT-TACC-T-C-TGTAA-TC-CCA-TCCCAAAGT-TGTT--CTTT-TGCATTCAG-CAT--CCTG-GTCA-TAAACTG-CGAAAT-AAAGAACGGCC-TTCCG-ATTAGCACCATT-GTCAAAATATACAA-T-TAACA----TAT-----TCA------TAC------T--CGT-CAAA-T--------ATAC-AATCAAAGTCAATACTGTCGTGAAACTTTACCATAA-A----GATCAGCGCTATCGTCAACAT-CTACCAAAA---TG-AGTAACA--ATG--TA---ACGAA--CATATATATTTTGTTAGA
gi|6 : aTACCACA-CA-T-C---GG-GAT-ATCACA-T--AA--CT--CAAGTCG--TTTATT-TGGG--TCTGTAGTGTAACACC-ATGGT-GT-TGATTC-----A--TAATCTGGGTTCCTGCAGTAGT-TT-TC--TGGTAGA-T-CTGTCCATG--CGGTGT--------G-GGT--G--TGAGG-GGATTGAG-AT-G-CCCAG-A-CCTGACAAGT-T-CTCCCAGA--TATT-GTCACGTT-GATTT-TTCC-A-C-TGTAA-TC-CCA-ACCATACGT-TGTT--CTTT-TGCAATTGG-GAT--CCTC-ATTA-TAGTCTG-C-AAAatgcacaaaatagaggtccgtttcgataagcagtctcgtcaaatttagaagaagaaatgccacatccataaatgatcttacttcggatgatccaaagagatttacatcttt
gi|9 : ---GG-GAT-ATCACA-CTGGG--TC--CAA--CG--AACATT-CGGG--TTTACGGTGTAACACC-AGGGG-GC--GCTTCC----G--CCATCCGGGTTCCGGCAGTAAT-TT-TC-----TTGG-T----CACCTA---GTTGTCCATTTCCG-TGG--GTATGTGG-CGACTG-G-CT-GTCCCAT-C-TCTGACACTCAT-CTCCCataatcgacatttctacaatcaaaatcagcaacctcatcagagatattattaaagtaaacactct
gi|15 : caatgaT-TT-TC--CGGTAGA-T-TTGTCCCTA--TGCTAT--------G-AGA--G--TGAGG-AGACTGGG-AC-G-CCCAA-T-CCTGGCAAGT-T-TTTCCTAA--TATC-GTTTTGCT-GATAT-ATCC-C-G-CGTAA-TC-gtgtt
gi|10 : GA--G--TGAGG-ATATTGGG-AC-G-CCCAG-G-CCTGACAGGT-C-CTCCCGGT--TTTC-GTCACGTT-GAT-T-TTCC-CGT-TGTAG-TT-CCA-TCCATGAAA-TGTT--CTTT-TGCAATCAG-CAA--CCTC-ATCA-GAGTCTGTC-AAAT-AAAGAACAACA-TTTCA-AT----ACAAATAGGAGA-------AG-G-TAACA----Tgcttc
gi|16 : gGGG-AC-G-CCCAG-G-CCTGGCAAGT-C-CTCCCAGC--TTCT-GTCACGCT-GATTT-TACC-T-A-TGTAA-TC-CCA-TCCCAAAGT-CGTT--CTTT-TGCAGTCAG-CAT--CCTG-GTCA-TAATCTtg
gi|14 : CCCAAAGT-CGTT--CTTT-TGCATTCA--TGA--TCTTGGTCA-TTATCTG-C-AAAATAAAGAGCAGGC-TATCG-ATTAGCACCATT-GTCGAACTATGCAA-T-TAACA----TCT-----TCA------CAC------T--CGT-CAAT-T--------ATAC-
gi|7 : cACCATT-GTCGA-------AA-T-TAACAACAAT-TAC-AATGAA-----CACATTCA-TA-CGT-GAAC-TCATTAAATATAC-AATCAGTAGCAACACTATTGTGTAACTT---TAC-C-ATAATGATCAGCGCCATCATCAAGAT-CTA-CGAAA---TG-AGTAACA--ATG-TTA---CA-AA--TATATATATTTTGTCAGA
gi|14 : TATCGATTAG-----CAC---CA-T--TGTCGAAC-T--------ATGC-AATTAACATCTTCACACTCGTCAATatgcacaaatagagagctctttcagtatgcaacctttcctaatttataagaattgttacatgctccaaagagaattacatctttca
gi|4 : ccccaaagtcgttcttttgcattcatgatcttggtcattatctgcaaaataaagagcaggcATCTT---TGTGC-A-----ATCAGCAACCTCGCCAGAAGTCTG-TAAAA---TA-AACAACACCATT-TCAAATAC-AA--TA-Atatac
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TATTTTGTCAGAATGCACAAAATAGAGGAACGTTTCGATAACAGCTTCGTCAAATTTAGAAGAAGATTGCCACATCAATGAATGATCTTACCTCGGATTATCCAAAGAGATTTACATCTTTAT
Unaligned ( gi|13 ): TTGTCAAAATCTACAAAAGAGAGAAAGATTACAATAAGCAAAGCTCCTCAAATTTAGAAAAAAAAACCTCTAAAGAACTACACATAAAGATCCTACTGACTCTCTTCAAGAGAAATATACA
Unaligned ( gi|17 ): GGATATCGCAGTACTGGAAACGGACAGTAGCGTTCACAGTGTAGCACCATGGCCTCTCGTTATAGTCGGGGTTTCTGCAGTAATTATCGTGCT
Unaligned ( gi|18 ): TGGTTCAGCGATTCTTAAGAAGAAGTATAAAAAAGGAAAAGATGGCAAATGTGCATTACATGAGTAGGTACGGAATTTAGAGCTGATAGC
Unaligned ( gi|19 ): AAAGAACTACACATAAAGATCCTACTAACTCTCTTCAAGAGAAAT
Unaligned ( gi|20 ): CCTTCATTAAGGTAACAAGATATTTCACGCGTTCACATC
Alignments
lowQualScore : 4444 2 2 22 1 1 22222 1111111 111 1111 1 1111 11111 11111111 111111 111 11 2222 11 4444444 66666666666666666666666666666666666666666666666666 333 111 1 11 111 1 11 1
lowQualScore : 0 4444 3 0 1 1 6 1 3 00 2 7 1 11 6 2 1 4 00000 2222222 88888 1 5 999 000 7777 5 5 4444 4 4 8888 66 66 0 66 2 3 4 66 0 5 1 1111 5 0 22222 0 2 4 4 55 6 8 777777 88888888 0 222222 66 55 4 8 4 55 4 4 55 3 111 4 4 66 8 8 4 44 4 4 5 4 88 66 4 1 4 888 1 4 3333 00 777 55 5 1 2222222 5 66666666666666666666666666666666666666666666666666 5 2 1 22 4 555 333 1 1 0 33 777 9 0 33 0 1 3 66 2
lowQualScore : . .... . . . . . . . .. . . . .. . . . . ..... ....... ..... . . ... ... .... . . .... . . .... .. .. . .. . . . .. . . . .... . . ..... . . . . .. . . ...... ........ . ...... .. .. . . . .. . . .. . ... . . .. . . . .. . . . . .. .. . . . ... . . .... .. ... .. . . ....... . .................................................. . . . .. . ... ... . . . .. ... . . .. . . . .. .
lowQualScore : 7 0000 3 7 0 0 7 0 7 77 0 3 0 77 7 5 0 0 00000 2222222 88888 6 7 999 000 0000 0 0 0000 4 4 7777 11 11 2 11 6 9 4 11 4 0 0 0000 0 4 55555 2 5 4 4 33 4 9 999999 11111111 2 000000 11 44 0 0 0 00 0 0 55 0 000 4 4 11 9 9 4 33 4 4 0 4 99 11 4 0 4 777 0 4 9999 11 111 11 0 3 9999999 7 66666666666666666666666666666666666666666666666666 7 2 0 00 0 000 555 0 0 0 88 555 2 0 22 0 2 2 55 5
consensus : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCT-GTAGGAGAAAGTAAAACAGTAAAGTTGACGAACGGACAATANATGATTAGA-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-GCC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-CTGTA-ATC-CCA-TCCA-AAAGT-CGTT--CTTT-TGCANTCAG-CAN--CCTCGTCANAA-TCTG-CG-AAAT-AAAGAA-C-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---T-AC--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNN-AGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
Reference ( family-3635 ) : NGATGTCTATAGCAGTATTCGGTTGANAGNGGCGNAGTGAATTCTNGTAGGAGGANGCNAAACAGTAAAGTTGACGAACGGATAANATATGATTAGA-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TANACTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TTTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGGTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-NCC-TGGCAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-NTGTA-ATC-CCA-TCCA-AAAGT-CGTT--CTTT-TGCANTCAG-CAA--CCTCGTCANAA-TCTG-C--AAAT-AAAGAA-C-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---T-AC-GA---T---CA-CAC-CA-T--CGTGAAC-T--------ATAC-AATCAAAATCAACACTNTCGTNNATCTT---CATNC-AGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATATTTTGTCAGA
gi|1 : ATGTTTAT----GTATTCGGTTAATAGAG-CTGAGTGAATTCTGGTAGGAGAAAGCTAAACAGTAAAGTTGACGATCGAACAATAAATGATTAGA-----AAAGC--TTAATTT-GACCTTATATCGTGA-GATGAACATAAAATATTTACCACA-CA-TA--TGGAAATAATCGCA-C--AA--TT--CAAGTCG--TATA-T-TGGAACTCTGTGGTATAACA-C-AAGG--T-GT-TGG-TC-----ATTATCCGGGTTCCTGCAGTAGT-TTATC-AGATGATT-CTGCCCCCTTGG-AT--------GTTG-----G--TGGGAT-GATTGAGAAC-G-CCCAGTATC-TGACAAACTC--CTCCCAGATTTTTC-GTCAAGTT-AATGT-CTT-CCGC-CTGTATATCGCCATTCCA-AAAAT-TGTT--C-TT-TGCACTCGGTTAATTTTTCGTCAAAA-TCTGCC--AAATGGGAGAA-T-GGTATTTTCGTTTCAGCACCAGTGT--G-------AAT-TAACAGTG---T-ATGGA---T---CACCAC-CA-TTCCGTGAATAT--------ATACAAATTAAAATCAATACTCTCGTCCATCTT---CATTCAAGATCAGCACCCTTGTCAGGAGCTA-CATCACATTGAAAG-AACAGATGATTAAC-AAACTA-ATACTTTTTCAG
gi|10 : GA-----G--TGAGGA-TATTG-GGAC-G-CCCAG-GCC-TGACAGG-TC--CTCCCGGT--TTTC-GTCACGTT-GA--T-TTT-CC-CGTTGTA-GTT-CCA-TCCATGAAAT--GTT--CTTT-TGCAATCAG-CAA--CCTCATCAGAG-TCTGTC--AAAT-AAAGAA-C-AACA-TTTCA-ATggcaaaaaa
gi|11 : gGATGTCTATAGCAGTATT-GGTTGAAAGTGGTGCAGTGA-TTCTT-TAGAAG-ATGTAAAA-A--AAAGTTGACAAACAGATAACATATGATTAGA-----TAAGC----AA-TT------TAAACC-TGA---------TAGCCTATGTACCTCA-TA-T---GGG-AAC-ATCGCA-T--AA--TTTCCAA--CG--TTTGAT-TGGG--TCTGTGGTAacaaataggagaaggtaacattg
gi|14 : CCC-AAAGT-CGTT--CTTT-TGCATTCAT-GAT--CTTGGTCATTA-TCTG-CA-AAAT-AAAGAG-CAGGC--TATCG-ATTAGCACCATTGTCGAACTATGCAAT-TAACA-TC---T---------T---CA-CAC----T--CGTCAAT-T--------ATAC-
gi|15 : cT-TT-TC-CGGTAGAT-TTGTCCCTATGCTAT--------GAGA-----G--TGAGGA-GACTG-GGAC-G-CCCAA-TCC-TGGCAAG-TT--TTTCCTAA--TATC-GTTTTGCT-GA--TATAT-CC-C-GCGTA-ATC-
gi|16 : G-GGAC-G-CCCAG-GCC-TGGCAAG-TC--CTCCCAGC--TTCT-GTCACGCT-GA--T-TTTACC-T-ATGTA-ATC-CCA-TCCC-AAAGT-CGTT--CTTT-TGCAGTCAG-CAT--CCTGGTCATAA-TCTgcttc
gi|2 : ATATG-TGA-GGCGAGC-TATACAATTTACCACA-CA-T---AGG-GAT-ATCGCA-C--AT--CT--CAAATCG--TACACC-TGGG--TCTGTGGTATAACACC-ATGG--C-GT-TGGTTC-----AGAATCCGGATTTCTACAGTAGT-TT-CC-CGGTAAATACT-TCCCTACTTCGT--------GTTT-----G--TGAGGT-GATTG-GGAC-G-CCCAG-GCC-TGGCAAG-TC--CTCCCAGA--TTCT-GTCACGCT-GA--T-TTTACC-T-CTGTA-ATC-CCA-TCCC-AAAGT-TGTT--CTTT-TGCATTCAG-CAT--CCTGGTCATAA-ACTG-CG-AAAT-AAAGAA-C-GGCC-TTCCG-ATTAGCACCATTGTCAAAATATACAAT-TAACA-TA---T---------T---CA-TAC----T--CGTCAAA-T--------ATAC-AATCAAAGTCAATACTGTCGTGAAACTTTACCATAA-AGATCAGCGCTATCGTCAACATCTACCA--AAAT---GAGTAACA-ATG--TAACGAACATATATATTTTGTTAGA
gi|3 : aGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCT-GTAG-AGAAAGTAAAACAGTAAAGTTGACGAACGAACAATAAATGATTAGA-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TAAAATATTTACCACA-CA-T---TGG-AAT-ATCGCA-C--AA--TT--CAAGTCG--TATATT-TGGA--TCTGTGGTATAACACC-AAGG--T-GT-TGGTTC-----ATTATCCGGGTTCCTGCAGTAGT-TT-TC-AGATTGAT-CTGCCCCTATGGTGT--------GTGA-----G--TGGGGT-GATTG-AGAC-G-CCCAG-TTC-TGACAAA-CT--CTCCCAGA--TTTC-GTCAAGTT-AA--TGTTT-CC-C-CTGTA-TTC-CCA-TCCA-AAAAT-TGTT--CTTT-TGCAATCAG-TAA--TCTCGTCAAAA-TCTG-C--AAATGGAGGAA-T-GGTA-TTTCG-ATCAGCACCAGTGTTGA-------AGT-TAACA-TG---T-AT-GA---T---CACCAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTCCATCTT---CATTC-AGATCAGCACCCTTGTCAGGAGCTA-CA--TAAT---GAAGAACA-ATG-TTAAC-AATA-AT-TACTTTTTCAGAatgcacaaaatagaggtccgtttcgataagcagtctcgtcaaatttagaagaagaaatgccacatccataaatgatcttacttcggatgatccaaagagatttacatcttt
gi|4 : tA-----AAAGC--TTA--TT-GAG---------TGA-G-TGAAC-TATAAAACTTACCACAACA-TTCGCGG-AAT-GTCGCAAC--AAATCT--CCAGTCGGTTTTGTTATGGG--TCTGTGGTATA-CACCGAAGG--CCGT-TGGATCGGGGAATCA--CGGGTTC-TACAGTAGTATT-TC-TGGT-GAT-AGGTCC-TACGCTGT--------GGGG-----G--TGAGGATGTTTG-GGACCG-CCCAG-GCCCTGGCAGG-TC--CTTCCGCT--TTTC-GTCACGTTCGA--T-TTT-CC-CGATGTA-ATT-CCA-TCCA-TGAGTACGAT--CTTTGTGCAATCAG-CAA--CCTCGCCAGAAGTCTG-TA-AAAT-AAACAA-C-ACCA-TTTCA-A
gi|5 : gtgatcctaagtggaagttaaaaaaacaaaggtgcaatccatgtgcctacagatgagctcatctTTAGATC-TGAAGCTGAAA-TAAACTATCTACCACA-GAAT---CGG-AAT-AT-G-A-G--AA--TT--CCA--CG--TTTCAT-TGGG--TTTGTAGTGTAACATC-AGGG--A-GCCTGGTTC-----AACTTACGGGTTC-TGCAGTAGT-TT-GT-CG-TAGATGCTGCCC------TGT--------GTGGTGACTA--TGAGGT--ATTG-AGAC-G-CC-AG-ACC-TGACACG-TC--CTCCCTG---TTTCAGTCACGTT-GA--T-TTT-AC-C-TTGT----T-CCA-TCCA-AGAGT-TGTTGTTTTT-TGCATTCAG-CAA--CCTCGTAAGGA-T-TG-CGGAAA--AAAGAA-A-GGCA-TTTCG-ATCAGGGCCATTGTCGAT------GATATAGCA-TT---TAAC-CATCTT---CA-CAC-TATT--CAAGA---T--------ATAC-AACGAAAATCAatacaataaagcaaaggtccacatatgtatatatacagaaatgaaaaatttcaattgcaaatctaacaatgaacatcaac
gi|6 : TACCACA-CA-T---CGG-GAT-ATCACA-T--AA--CT--CAAGTCG--TTTATT-TGGG--TCTGTAGTGTAACACC-ATGG--T-GT-TGATTC-----ATAATCTGGGTTCCTGCAGTAGT-TT-TC-TGGTAGAT-CTGTCCATGCGGTGT--------GGGT-----G--TGAGGG-GATTG-AGAT-G-CCCAG-ACC-TGACAAG-TT--CTCCCAGA--TATT-GTCACGTT-GA--T-TTT-TC-CACTGTA-ATC-CCA-ACCA-TACGT-TGTT--CTTT-TGCAATTGG-GAT--CCTCATTATAG-TCTG-C--A----AAATAATC-GACA-TTTCT-A-CA--------ATCAA-------AAT-CAGCA---------------------A-CCT-CA-T--CA-GAG-----------ATAT-TATTAAAGTAAACACTCT
gi|7 : ACCATTGTCGA-------AAT-TAACA-ACAATT-AC-AA---TGAACA-CATTCA-TA-CGTGAAC-TCATTAAATATAC-AATCAGTAGCAACACTATTGTGTAACTTTACCATAA-TGATCAGCGCCATCATCAAGATCTA-CG--AAAT---GAGTAACA-ATG-TTACA-AATATATATATTTTGTCAGA
gi|8 : AGTAACGTTGACGAACGGATAAGATATGATTACATATGTAGATCATTTCA-TTCGACCTGATAGC-TGA-GATAA---------------CATA-AA-T---CGG-AAT-ATCGCA-T--AA--CT--CATATCG--TTTATC-TGGG--TCTGTGGTATATCACC-ATGG--C-GT-TGGTTC-----ATCACTCGGGTTCCTACAGTAGT-TT-TC-CGGTAGAT-Catgcacaaatagagagctctttcagtatgcaacctttcctaatttataagaattgttacatgctccaaagagaattacatctttca
gi|9 : GG-GAT-ATCACA-CTGGG--TC--CAA--CG--AACATT-CGGG--TTTACGGTGTAACACC-AGGGGGC-GC-T--TCC-----GCCATCCGGGTTCCGGCAGTAAT-TT-TCTTGGT--------CACCTA-GTTGTCCATTTCCGTGG-----GTATGTGGC-GACTG-G--CTGTCCCAT-CTC-TGAC-AC-TCATCTCCCG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTTTGTCAGAATGCACAAAATAGAGGAACGTTTCGATAACAGCTTCGTCAAATTTAGAAGAAGATTGCCACATCAATGAATGATCTTACCTCGGATTATCCAAAGAGATTTACATCTTTAT
Unaligned ( gi|13 ): TTGTCAAAATCTACAAAAGAGAGAAAGATTACAATAAGCAAAGCTCCTCAAATTTAGAAAAAAAAACCTCTAAAGAACTACACATAAAGATCCTACTGACTCTCTTCAAGAGAAATATACA
Unaligned ( gi|17 ): GGATATCGCAGTACTGGAAACGGACAGTAGCGTTCACAGTGTAGCACCATGGCCTCTCGTTATAGTCGGGGTTTCTGCAGTAATTATCGTGCT
Unaligned ( gi|18 ): TGGTTCAGCGATTCTTAAGAAGAAGTATAAAAAAGGAAAAGATGGCAAATGTGCATTACATGAGTAGGTACGGAATTTAGAGCTGATAGC
Unaligned ( gi|19 ): AAAGAACTACACATAAAGATCCTACTAACTCTCTTCAAGAGAAAT
Unaligned ( gi|20 ): CCTTCATTAAGGTAACAAGATATTTCACGCGTTCACATC
Alignments
lowQualScore : 2222 1 1 111 1 111 11 22222222 1111111 111 1111 1 1111 11111 11111111 111111 111 111 1 4444444 777777777777777777777777777777777777777777777777777 1 11 111 1 11 1
lowQualScore : 8888 3 6 0 333 2 7 8 3 0 444 8 1 1 11 22222222 2222222 88 5 1 5 999 000 5555 5 5 4444 4 4 8888 66 66 0 66 1 3 4 66 0 5 1 1111 5 0 22222 0 2 4 4 55 6 8 6666 2 88888888 0 222222 66 55 4 8 4 66 4 4 55 3 111 4 4 66 8 4 4 888 4 4 5 4 88 66 4 1 4 777 1 4 8 0 5 55 5 1 2222222 5 111111111111111111111111111111111111111111111111111 5 11 1 7 22 22 1 1 0 33 777 9 0 33 0 1 3 66 1
lowQualScore : .... . . . ... . . . . . ... . . . .. ........ ....... .. . . . ... ... .... . . .... . . .... .. .. . .. . . . .. . . . .... . . ..... . . . . .. . . .... . ........ . ...... .. .. . . . .. . . .. . ... . . .. . . . ... . . . . .. .. . . . ... . . . . . .. . . ....... . ................................................... . .. . . .. .. . . . .. ... . . .. . . . .. .
lowQualScore : 3333 3 7 0 555 8 0 8 2 8 000 0 8 0 00 00000000 2222222 88 0 6 7 999 000 7777 0 0 0000 4 4 7777 11 11 2 11 0 9 4 11 4 0 0 0000 0 4 55555 2 5 4 4 33 4 9 0000 8 11111111 2 000000 11 44 0 0 0 33 0 0 55 0 000 4 4 11 9 4 4 777 4 4 0 4 99 11 4 0 4 111 0 4 5 0 0 11 0 3 9999999 7 999999999999999999999999999999999999999999999999999 7 22 0 0 88 00 0 0 0 88 555 2 0 22 0 2 2 55 0
consensus : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAGNAGAAAGTAAAACAGTAAAGTTGACGA---ACG-GACAACANATGA--TTAG--A-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-GCC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-C-TGTA-ATC-CCA-TCCA-AAAGT-CGT--TCTTT-TGCANTCAG-CA--NCCTCGTCANAA-TCTGCGAAAT-AAAGAAC-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---TA--C--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNAAGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
Reference ( family-3635 ) : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAGGAGAAAGTAAAACAGTAAAGTTGACGA---ACG-GACAATANATGA--TTAG--A-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-GCC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-C-TGTA-ATC-CCA-TCCA-AAAGT-CGT--TCTTT-TGCANTCAG-CA--NCCTCGTCANAA-TCTGCGAAAT-AAAGAAC-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---TA--C--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNNAGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
gi|1 : ATGTTTAT----GTATTCGGTTAATAGAG-CTGAGTGAATTCTGGTAGGAGAAAGCTAAACAGTAAAGTTGACGA---TCG-AACAATAAATGA--TTAG--A-----AAAGC--TTAATTT-GACCTTATATCGTGA-GATGAACATAAAATATTTACCACA-CA-TA--TGGAAATAATCGCA-C--AA--TT--CAAGTCG--TATA-T-TGGAACTCTGTGGTATAACA-C-AAGG--T-GT-TGG-TC-----ATTATCCGGGTTCCTGCAGTAGT-TTATC-AGATGATT-CTGCCCCCTTGG-AT--------GTTG-----G--TGGGAT-GATTGAGAAC-G-CCCAGTATC-TGACAAACTC--CTCCCAGATTTTTC-GTCAAGTT-AATGT-CTT-CCGC-C-TGTATATCGCCATTCCA-AAAAT-TGT--TC-TT-TGCACTCGGTTAATTTTTCGTCAAAA-TCTGCCAAATGGGAGAAT-GGTATTTTCGTTTCAGCACCAGTGT--G-------AAT-TAACAGTG---TA--TGGA---T---CACCAC-CA-TTCCGTGAATAT--------ATACAAATTAAAATCAATACTCTCGTCCATCTTCAT--TCAAGATCAGCACCCTTGTCAGGAGCTA-CATCACATTGAAAG-AACAGATGATTAAC-AAACTA-ATACTTTTTCAG
gi|10 : GA-----G--TGAGGA-TATTG-GGAC-G-CCCAG-GCC-TGACAGG-TC--CTCCCGGT--TTTC-GTCACGTT-GA--T-TTT-CC-CGT-TGTA-GTT-CCA-TCCATGAAAT--GT--TCTTT-TGCAATCAG-CA--ACCTCATCAGAG-TCTGTCAAAT-AAAGAAC-AACA-TTTCA-ATggcaaaaaa
gi|11 : gGATGTCTATAGCAGTATT-GGTTGAAAGTGGTGCAGTGA-TTCTT-TAGAAGAT-GTAAAA-A--AAAGTTGACAA---ACA-GATAACATATGA--TTAG--A-----TAAGC----AA-T------TTAAACC-TGA---------TAGCCTATGTACCTCA-TA-T---GGG-AAC-ATCGCA-T--AA--TTTCCAA--CG--TTTGAT-TGGG--TCTGTGGTAacaaataggagaaggtaacattg
gi|14 : CCC-AAAGT-CGT--TCTTT-TGCATTCAT-GA--TCTTGGTCATTA-TCTGCAAAAT-AAAGAGCAGGC--TATCG-ATTAGCACCATTGTCGAACTATGCAAT-TAACA-TC---T----------T---CA-CAC----T--CGTCAAT-T--------ATAC-
gi|15 : cT-TT-TC-CGGTAGAT-TTGTCCCTATGCTAT--------GAGA-----G--TGAGGA-GACTG-GGAC-G-CCCAA-TCC-TGGCAAG-TT--TTTCCTAA--TATC-GTTTTGCT-GA--TATAT-CC-C-G-CGTA-ATC-
gi|16 : G-GGAC-G-CCCAG-GCC-TGGCAAG-TC--CTCCCAGC--TTCT-GTCACGCT-GA--T-TTT-AC-C-TATGTA-ATC-CCA-TCCC-AAAGT-CGT--TCTTT-TGCAGTCAG-CA--TCCTGGTCATAA-TCTgcttc
gi|2 : ATATG-TGA-GGCGAGC-TATACAATTTACCACA-CA-T---AGG-GAT-ATCGCA-C--AT--CT--CAAATCG--TACACC-TGGG--TCTGTGGTATAACACC-ATGG--C-GT-TGGTTC-----AGAATCCGGATTTCTACAGTAGT-TT-CC-CGGTAAATACT-TCCCTACTTCGT--------GTTT-----G--TGAGGT-GATTG-GGAC-G-CCCAG-GCC-TGGCAAG-TC--CTCCCAGA--TTCT-GTCACGCT-GA--T-TTTACC-T-C-TGTA-ATC-CCA-TCCC-AAAGT-TGT--TCTTT-TGCATTCAG-CA--TCCTGGTCATAA-ACTGCGAAAT-AAAGAAC-GGCC-TTCCG-ATTAGCACCATTGTCAAAATATACAAT-TAACA-TA---T----------T---CA-TAC----T--CGTCAAA-T--------ATAC-AATCAAAGTCAATACTGTCGTGAAACTTTACCATAAAGATCAGCGCTATCGTCAACATCTACCA--AAAT---GAGTAACA-ATG--TAACGAACATATATATTTTGTTAGA
gi|3 : aGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAG-AGAAAGTAAAACAGTAAAGTTGACGA---ACG-AACAATAAATGA--TTAG--A-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TAAAATATTTACCACA-CA-T---TGG-AAT-ATCGCA-C--AA--TT--CAAGTCG--TATATT-TGGA--TCTGTGGTATAACACC-AAGG--T-GT-TGGTTC-----ATTATCCGGGTTCCTGCAGTAGT-TT-TC-AGATTGAT-CTGCCCCTATGGTGT--------GTGA-----G--TGGGGT-GATTG-AGAC-G-CCCAG-TTC-TGACAAA-CT--CTCCCAGA--TTTC-GTCAAGTT-AA--TGTTT-CC-C-C-TGTA-TTC-CCA-TCCA-AAAAT-TGT--TCTTT-TGCAATCAG-TA--ATCTCGTCAAAA-TCTGC-AAATGGAGGAAT-GGTA-TTTCG-ATCAGCACCAGTGTTGA-------AGT-TAACA-TG---TA--TG-A---T---CACCAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTCCATCTT---CATTCAGATCAGCACCCTTGTCAGGAGCTA-CA--TAAT---GAAGAACA-ATG-TTAAC-AATA-AT-TACTTTTTCAGAatgcacaaaatagaggtccgtttcgataagcagtctcgtcaaatttagaagaagaaatgccacatccataaatgatcttacttcggatgatccaaagagatttacatcttt
gi|4 : tGTGA-TCCTA--AGTGGAAGTTAAAAAAACAAAGGTG-CAATCCATGTGCCTACAGATGAGCTCATCTA-----AAAGC--TTA--TT-GAG---------TGA-G-TGAAC-TATAAAACTTACCACAACA-TTCGCGG-AAT-GTCGCAAC--AAATCT--CCAGTCGGTTTTGTTATGGG--TCTGTGGTATA-CACCGAAGG--CCGT-TGGATCGGGGAATCA--CGGGTTC-TACAGTAGTATT-TC-TGGT-GAT-AGGTCC-TACGCTGT--------GGGG-----G--TGAGGATGTTTG-GGACCG-CCCAG-GCCCTGGCAGG-TC--CTTCCGCT--TTTC-GTCACGTTCGA--T-TTT-CC-CGA-TGTA-ATT-CCA-TCCA-TGAGTACGA--TCTTTGTGCAATCAG-CA--ACCTCGCCAGAAGTCTGTAAAAT-AAACAAC-ACCA-TTTCA-A
gi|5 : TTAGATC-TGAAGCTGAAA-TAAACTATCTACCACA-GAAT---CGG-AAT-AT-G-A-G--AA--TT--CCA--CG--TTTCAT-TGGG--TTTGTAGTGTAACATC-AGGG--A-GCCTGGTTC-----AACTTACGGGTTC-TGCAGTAGT-TT-GT-CG-TAGATGCTGCCC------TGT--------GTGGTGACTA--TGAGGT--ATTG-AGAC-G-CC-AG-ACC-TGACACG-TC--CTCCCTG---TTTCAGTCACGTT-GA--T-TTT-AC-C-T-TG----TT-CCA-TCCA-AGAGT-TGTTGTTTTT-TGCATTCAG-CA--ACCTCGTAAGGA-T-TGCGGAAA-AAAGAAA-GGCA-TTTCG-ATCAGGGCCATTGTCGAT------GATATAGCA-TT---TAACC--ATCTT---CA-CAC-TATT--CAAGA---T--------ATAC-AACGAAAATCAatacaataaagcaaaggtccacatatgtatatatacagaaatgaaaaatttcaattgcaaatctaacaatgaacatcaac
gi|6 : TACCACA-CA-T---CGG-GAT-ATCACA-T--AA--CT--CAAGTCG--TTTATT-TGGG--TCTGTAGTGTAACACC-ATGG--T-GT-TGATTC-----ATAATCTGGGTTCCTGCAGTAGT-TT-TC-TGGTAGAT-CTGTCCATGCGGTGT--------GGGT-----G--TGAGGG-GATTG-AGAT-G-CCCAG-ACC-TGACAAG-TT--CTCCCAGA--TATT-GTCACGTT-GA--T-TTT-TC-CAC-TGTA-ATC-CCA-ACCA-TACGT-TGT--TCTTT-TGCAATTGG-GA--TCCTCATTATAG-TCTGCAAAAT-A---ATC-GACA-TTTCT-A-CA--------ATCAA-------AAT-CAGCA----------------------A-CCT-CA-T--CA-GAG-----------ATAT-TATTAAAGTAAACACTCT
gi|7 : ACCATTGTCGA-------AAT-TAACA-ACAATTA--C--AA--TGAACA-CATTCA-TA-CGTGAAC-TCATTAAATATAC-AATCAGTAGCAACACTATTGTGTAACTTTACCATAATGATCAGCGCCATCATCAAGATCTA-CG--AAAT---GAGTAACA-ATG-TTACA-AATATATATATTTTGTCAGA
gi|8 : AGTAACGTTGACGA---ACG-GATAAGATATGA--TTAC--ATATGTAGATCATTTCA-TTCGACCTGATAGC-TGA-GATAA---------------CATA-AA-T---CGG-AAT-ATCGCA-T--AA--CT--CATATCG--TTTATC-TGGG--TCTGTGGTATATCACC-ATGG--C-GT-TGGTTC-----ATCACTCGGGTTCCTACAGTAGT-TT-TC-CGGTAGAT-Catgcacaaatagagagctctttcagtatgcaacctttcctaatttataagaattgttacatgctccaaagagaattacatctttca
gi|9 : GG-GAT-ATCACA-CTGGG--TC--CAA--CG--AACATT-CGGG--TTTACGGTGTAACACC-AGGGGGC-GC-T--TCC-----GCCATCCGGGTTCCGGCAGTAAT-TT-TCTTGGT--------CACCTA-GTTGTCCATTTCCGTGG-----GTATGTGGC-GACTG-G--CTGTCCCAT-CTC-TGAC-AC-TCATCTCCCG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTTTGTCAGAATGCACAAAATAGAGGAACGTTTCGATAACAGCTTCGTCAAATTTAGAAGAAGATTGCCACATCAATGAATGATCTTACCTCGGATTATCCAAAGAGATTTACATCTTTAT
Unaligned ( gi|13 ): TTGTCAAAATCTACAAAAGAGAGAAAGATTACAATAAGCAAAGCTCCTCAAATTTAGAAAAAAAAACCTCTAAAGAACTACACATAAAGATCCTACTGACTCTCTTCAAGAGAAATATACA
Unaligned ( gi|17 ): GGATATCGCAGTACTGGAAACGGACAGTAGCGTTCACAGTGTAGCACCATGGCCTCTCGTTATAGTCGGGGTTTCTGCAGTAATTATCGTGCT
Unaligned ( gi|18 ): TGGTTCAGCGATTCTTAAGAAGAAGTATAAAAAAGGAAAAGATGGCAAATGTGCATTACATGAGTAGGTACGGAATTTAGAGCTGATAGC
Unaligned ( gi|19 ): AAAGAACTACACATAAAGATCCTACTAACTCTCTTCAAGAGAAAT
Unaligned ( gi|20 ): CCTTCATTAAGGTAACAAGATATTTCACGCGTTCACATC
Alignments
lowQualScore : 2222 1 1 111 1 111 11 22222222 1111111 111 1111 1 1111 11111 11111111 111111 111 111 1 4444444 777777777777777777777777777777777777777777777777777 1 11 111 1 11 1
lowQualScore : 8888 3 6 0 333 0 7 8 3 0 444 8 1 1 11 22222222 2222222 88 5 1 5 999 000 5555 5 5 4444 4 4 8888 66 66 0 66 1 3 4 66 0 5 1 1111 5 0 22222 0 2 4 4 55 6 8 6666 2 88888888 0 222222 66 55 4 8 4 66 4 4 55 3 111 4 4 66 8 4 4 888 4 4 5 4 88 66 4 1 4 777 1 4 8 0 5 55 5 1 2222222 5 111111111111111111111111111111111111111111111111111 5 11 1 7 22 1 1 1 0 33 777 9 0 33 0 1 3 66 1
lowQualScore : .... . . . ... . . . . . ... . . . .. ........ ....... .. . . . ... ... .... . . .... . . .... .. .. . .. . . . .. . . . .... . . ..... . . . . .. . . .... . ........ . ...... .. .. . . . .. . . .. . ... . . .. . . . ... . . . . .. .. . . . ... . . . . . .. . . ....... . ................................................... . .. . . .. . . . . .. ... . . .. . . . .. .
lowQualScore : 3333 3 7 0 555 8 0 8 2 8 000 0 4 0 00 00000000 2222222 88 0 6 7 999 000 7777 0 0 0000 4 4 7777 11 11 2 11 0 9 4 11 4 0 0 0000 0 4 55555 2 5 4 4 33 4 9 0000 8 11111111 2 000000 11 44 0 0 0 33 0 0 55 0 000 4 4 11 9 4 4 777 4 4 0 4 99 11 4 0 4 111 0 4 5 0 0 11 0 3 9999999 7 999999999999999999999999999999999999999999999999999 7 22 0 0 88 0 0 0 0 88 555 2 0 22 0 2 2 55 0
consensus : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAGNAGAAAGTAAAACAGTAAAGTTGACGA---ACG-GACAACANATGA--TTAG--A-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-GCC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-C-TGTA-ATC-CCA-TCCA-AAAGT-CGT--TCTTT-TGCANTCAG-CA--NCCTCGTCANAA-TCTGCGAAAT-AAAGAAC-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---TA--C--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNAAGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
Reference ( family-3635 ) : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAGNAGAAAGTAAAACAGTAAAGTTGACGA---ACG-GACAACANATGA--TTAG--A-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-GCC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-C-TGTA-ATC-CCA-TCCA-AAAGT-CGT--TCTTT-TGCANTCAG-CA--NCCTCGTCANAA-TCTGCGAAAT-AAAGAAC-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---TA--C--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNAAGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
gi|1 : ATGTTTAT----GTATTCGGTTAATAGAG-CTGAGTGAATTCTGGTAGGAGAAAGCTAAACAGTAAAGTTGACGA---TCG-AACAATAAATGA--TTAG--A-----AAAGC--TTAATTT-GACCTTATATCGTGA-GATGAACATAAAATATTTACCACA-CA-TA--TGGAAATAATCGCA-C--AA--TT--CAAGTCG--TATA-T-TGGAACTCTGTGGTATAACA-C-AAGG--T-GT-TGG-TC-----ATTATCCGGGTTCCTGCAGTAGT-TTATC-AGATGATT-CTGCCCCCTTGG-AT--------GTTG-----G--TGGGAT-GATTGAGAAC-G-CCCAGTATC-TGACAAACTC--CTCCCAGATTTTTC-GTCAAGTT-AATGT-CTT-CCGC-C-TGTATATCGCCATTCCA-AAAAT-TGT--TC-TT-TGCACTCGGTTAATTTTTCGTCAAAA-TCTGCCAAATGGGAGAAT-GGTATTTTCGTTTCAGCACCAGTGT--G-------AAT-TAACAGTG---TA--TGGA---T---CACCAC-CA-TTCCGTGAATAT--------ATACAAATTAAAATCAATACTCTCGTCCATCTTCAT--TCAAGATCAGCACCCTTGTCAGGAGCTA-CATCACATTGAAAG-AACAGATGATTAAC-AAACTA-ATACTTTTTCAG
gi|10 : GA-----G--TGAGGA-TATTG-GGAC-G-CCCAG-GCC-TGACAGG-TC--CTCCCGGT--TTTC-GTCACGTT-GA--T-TTT-CC-CGT-TGTA-GTT-CCA-TCCATGAAAT--GT--TCTTT-TGCAATCAG-CA--ACCTCATCAGAG-TCTGTCAAAT-AAAGAAC-AACA-TTTCA-ATggcaaaaaa
gi|11 : gGATGTCTATAGCAGTATT-GGTTGAAAGTGGTGCAGTGA-TTCTT-TAGAAGAT-GTAAAA-A--AAAGTTGACAA---ACA-GATAACATATGA--TTAG--A-----TAAGC----AA-T------TTAAACC-TGA---------TAGCCTATGTACCTCA-TA-T---GGG-AAC-ATCGCA-T--AA--TTTCCAA--CG--TTTGAT-TGGG--TCTGTGGTAacaaataggagaaggtaacattg
gi|14 : CCC-AAAGT-CGT--TCTTT-TGCATTCAT-GA--TCTTGGTCATTA-TCTGCAAAAT-AAAGAGCAGGC--TATCG-ATTAGCACCATTGTCGAACTATGCAAT-TAACA-TC---T----------T---CA-CAC----T--CGTCAAT-T--------ATAC-
gi|15 : cT-TT-TC-CGGTAGAT-TTGTCCCTATGCTAT--------GAGA-----G--TGAGGA-GACTG-GGAC-G-CCCAA-TCC-TGGCAAG-TT--TTTCCTAA--TATC-GTTTTGCT-GA--TATAT-CC-C-G-CGTA-ATC-
gi|16 : G-GGAC-G-CCCAG-GCC-TGGCAAG-TC--CTCCCAGC--TTCT-GTCACGCT-GA--T-TTT-AC-C-TATGTA-ATC-CCA-TCCC-AAAGT-CGT--TCTTT-TGCAGTCAG-CA--TCCTGGTCATAA-TCTgcttc
gi|2 : ATATG-TGA-GGCGAGC-TATACAATTTACCACA-CA-T---AGG-GAT-ATCGCA-C--AT--CT--CAAATCG--TACACC-TGGG--TCTGTGGTATAACACC-ATGG--C-GT-TGGTTC-----AGAATCCGGATTTCTACAGTAGT-TT-CC-CGGTAAATACT-TCCCTACTTCGT--------GTTT-----G--TGAGGT-GATTG-GGAC-G-CCCAG-GCC-TGGCAAG-TC--CTCCCAGA--TTCT-GTCACGCT-GA--T-TTTACC-T-C-TGTA-ATC-CCA-TCCC-AAAGT-TGT--TCTTT-TGCATTCAG-CA--TCCTGGTCATAA-ACTGCGAAAT-AAAGAAC-GGCC-TTCCG-ATTAGCACCATTGTCAAAATATACAAT-TAACA-TA---T----------T---CA-TAC----T--CGTCAAA-T--------ATAC-AATCAAAGTCAATACTGTCGTGAAACTTTACCATAAAGATCAGCGCTATCGTCAACATCTACCA--AAAT---GAGTAACA-ATG--TAACGAACATATATATTTTGTTAGA
gi|3 : aGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAG-AGAAAGTAAAACAGTAAAGTTGACGA---ACG-AACAATAAATGA--TTAG--A-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TAAAATATTTACCACA-CA-T---TGG-AAT-ATCGCA-C--AA--TT--CAAGTCG--TATATT-TGGA--TCTGTGGTATAACACC-AAGG--T-GT-TGGTTC-----ATTATCCGGGTTCCTGCAGTAGT-TT-TC-AGATTGAT-CTGCCCCTATGGTGT--------GTGA-----G--TGGGGT-GATTG-AGAC-G-CCCAG-TTC-TGACAAA-CT--CTCCCAGA--TTTC-GTCAAGTT-AA--TGTTT-CC-C-C-TGTA-TTC-CCA-TCCA-AAAAT-TGT--TCTTT-TGCAATCAG-TA--ATCTCGTCAAAA-TCTGC-AAATGGAGGAAT-GGTA-TTTCG-ATCAGCACCAGTGTTGA-------AGT-TAACA-TG---TA--TG-A---T---CACCAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTCCATCTT---CATTCAGATCAGCACCCTTGTCAGGAGCTA-CA--TAAT---GAAGAACA-ATG-TTAAC-AATA-AT-TACTTTTTCAGAatgcacaaaatagaggtccgtttcgataagcagtctcgtcaaatttagaagaagaaatgccacatccataaatgatcttacttcggatgatccaaagagatttacatcttt
gi|4 : tGTGA-TCCTA--AGTGGAAGTTAAAAAAACAAAGGTG-CAATCCATGTGCCTACAGATGAGCTCATCTA-----AAAGC--TTA--TT-GAG---------TGA-G-TGAAC-TATAAAACTTACCACAACA-TTCGCGG-AAT-GTCGCAAC--AAATCT--CCAGTCGGTTTTGTTATGGG--TCTGTGGTATA-CACCGAAGG--CCGT-TGGATCGGGGAATCA--CGGGTTC-TACAGTAGTATT-TC-TGGT-GAT-AGGTCC-TACGCTGT--------GGGG-----G--TGAGGATGTTTG-GGACCG-CCCAG-GCCCTGGCAGG-TC--CTTCCGCT--TTTC-GTCACGTTCGA--T-TTT-CC-CGA-TGTA-ATT-CCA-TCCA-TGAGTACGA--TCTTTGTGCAATCAG-CA--ACCTCGCCAGAAGTCTGTAAAAT-AAACAAC-ACCA-TTTCA-A
gi|5 : TTAGATC-TGAAGCTGAAA-TAAACTATCTACCACA-GAAT---CGG-AAT-AT-G-A-G--AA--TT--CCA--CG--TTTCAT-TGGG--TTTGTAGTGTAACATC-AGGG--A-GCCTGGTTC-----AACTTACGGGTTC-TGCAGTAGT-TT-GT-CG-TAGATGCTGCCC------TGT--------GTGGTGACTA--TGAGGT--ATTG-AGAC-G-CC-AG-ACC-TGACACG-TC--CTCCCTG---TTTCAGTCACGTT-GA--T-TTT-AC-C-T-TG----TT-CCA-TCCA-AGAGT-TGTTGTTTTT-TGCATTCAG-CA--ACCTCGTAAGGA-T-TGCGGAAA-AAAGAAA-GGCA-TTTCG-ATCAGGGCCATTGTCGAT------GATATAGCA-TT---TAACC--ATCTT---CA-CAC-TATT--CAAGA---T--------ATAC-AACGAAAATCAatacaataaagcaaaggtccacatatgtatatatacagaaatgaaaaatttcaattgcaaatctaacaatgaacatcaac
gi|6 : TACCACA-CA-T---CGG-GAT-ATCACA-T--AA--CT--CAAGTCG--TTTATT-TGGG--TCTGTAGTGTAACACC-ATGG--T-GT-TGATTC-----ATAATCTGGGTTCCTGCAGTAGT-TT-TC-TGGTAGAT-CTGTCCATGCGGTGT--------GGGT-----G--TGAGGG-GATTG-AGAT-G-CCCAG-ACC-TGACAAG-TT--CTCCCAGA--TATT-GTCACGTT-GA--T-TTT-TC-CAC-TGTA-ATC-CCA-ACCA-TACGT-TGT--TCTTT-TGCAATTGG-GA--TCCTCATTATAG-TCTGCAAAAT-A---ATC-GACA-TTTCT-A-CA--------ATCAA-------AAT-CAGCA----------------------A-CCT-CA-T--CA-GAG-----------ATAT-TATTAAAGTAAACACTCT
gi|7 : ACCATTGTCGA-------AAT-TAACA-ACAATTA--C--AA--TGAACA-CATTCA-TA-CGTGAAC-TCATTAAATATAC-AATCAGTAGCAACACTATTGTGTAACTTTACCATAATGATCAGCGCCATCATCAAGATCTA-CG--AAAT---GAGTAACA-ATG-TTACA-AATATATATATTTTGTCAGA
gi|8 : AGTAACGTTGACGA---ACG-GATAAGATATGA--TTAC--ATATGTAGATCATTTCA-TTCGACCTGATAGC-TGA-GATAA---------------CATA-AA-T---CGG-AAT-ATCGCA-T--AA--CT--CATATCG--TTTATC-TGGG--TCTGTGGTATATCACC-ATGG--C-GT-TGGTTC-----ATCACTCGGGTTCCTACAGTAGT-TT-TC-CGGTAGAT-Catgcacaaatagagagctctttcagtatgcaacctttcctaatttataagaattgttacatgctccaaagagaattacatctttca
gi|9 : GG-GAT-ATCACA-CTGGG--TC--CAA--CG--AACATT-CGGG--TTTACGGTGTAACACC-AGGGGGC-GC-T--TCC-----GCCATCCGGGTTCCGGCAGTAAT-TT-TCTTGGT--------CACCTA-GTTGTCCATTTCCGTGG-----GTATGTGGC-GACTG-G--CTGTCCCAT-CTC-TGAC-AC-TCATCTCCCG
blockSeqs : AGCA . G . TT A A C G TCC T C T GC ATATGT ATTTCA TC C A . AGC GC GCCT A A TCGC . . CTG AT TC A GT T A A . G T GGC C GGGGA C A . TT A A CTAT C CCATTTCC GTGACT TA AT . C T G C . AT G T A C . A A . GT . . . T AC TG G A . A G G C G A A . T ACTATGC A ACAATTACAATGAACACATTCATACGTGAACTCATTAAAT . GA A T CC A A T C . . T . T G C T TA G
blockSeqs : . . G . GT T G A A . . T A . CTA TTAA T C T . GG AC TACA . . G . . AC . . G . A C . . . A CC . . C . . C A G CTAC T . A . A . T . T . . . T A . . . G . . TA . . . . C . . T . T T . A . . C . T AATATAC . TTTAACCATCTTCACACTATTCAAGAT . CC T T CC T C G . . . G . T . T T TA T
blockSeqs : . A . . . G . . C G . A TTA T . T . GA AC AAAT . . A . . T . . G . A T . . . A C . . C . . C T . CTAT G . A . A . . . G . . . A C . . . . . . GA . . . . C . . G . T T . G . . A . G T . TGTATGATCACCACCATCGTGAATT . GT A . C A A T . . . T . . . T . T G
blockSeqs : . . . G T . A AA . . G . GA AA TAAA . . T . . C . . G . T T . . . G T . . C . . A A . ATGC C . T . T . . . G . . . A A . . . . . . AC . . . . T . . T . T T . A . . A . T . . TCTTCACACTCGTCAATT .
blockSeqs : T . G . AACT . . C . . C . . A . T A . . . T A . . C . . T A . TAC G . A . T . . . T . . . A A . . . . . . G . . . . T . . A . A A . G . . A . T . . TATTCATACTCGTCAAAT .
blockSeqs : . . . . . . . C . . G . . . . T T . . . T T . . . . . C A . CTA T . G . T . . . G . . . G T . . . . . . C . . . . T . . A . A G . A . . A . . . . ACCTCATCAGAG .
blockSeqs : . . C . . T . . . . T T . . . G C . . . . . T . . . . . T . G . . . A . . . T A . . . . . . C . . . . T . . T . A G . . . . . .
blockSeqs : . . T . . . . A T . . . . C . . G . C . . . A . . . A . . . . . . . T . . . . . . A . T T .
blockSeqs : . . . C . . . G
blockSeqCons : TTA**** AC* C*** ** G* A** ** C** N** A*
originalCons : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAGNAGAAAGTAAAACAGTAAAGTTGACGA---ACG-GACAACANATGA--TTAG--A-----AAAGC--TTAA-TT-GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-GCC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-C-TGTA-ATC-CCA-TCCA-AAAGT-CGT--TCTTT-TGCANTCAG-CA--NCCTCGTCANAA-TCTGCGAAAT-AAAGAAC-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---TA--C--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNAAGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
finalCons : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAGNAGAAAGTAAAACAGTAAAGTTGACGA---ACG-GACAACANATGA--TTAG--A-----AAAGCTTA----TT-GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-TC---GG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAGG-CC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-CC--TGTA-ATC-CCA-TCCA-AAAGT-CGT--TCTTT-TGCANTCAG-CAN--CCTCGTCANAA-TCTGCGAAAT-AAAGAAC-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---TA--C--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNAAGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTTTGTCAGAATGCACAAAATAGAGGAACGTTTCGATAACAGCTTCGTCAAATTTAGAAGAAGATTGCCACATCAATGAATGATCTTACCTCGGATTATCCAAAGAGATTTACATCTTTAT
Unaligned ( gi|13 ): TTGTCAAAATCTACAAAAGAGAGAAAGATTACAATAAGCAAAGCTCCTCAAATTTAGAAAAAAAAACCTCTAAAGAACTACACATAAAGATCCTACTGACTCTCTTCAAGAGAAATATACA
Unaligned ( gi|17 ): GGATATCGCAGTACTGGAAACGGACAGTAGCGTTCACAGTGTAGCACCATGGCCTCTCGTTATAGTCGGGGTTTCTGCAGTAATTATCGTGCT
Unaligned ( gi|18 ): TGGTTCAGCGATTCTTAAGAAGAAGTATAAAAAAGGAAAAGATGGCAAATGTGCATTACATGAGTAGGTACGGAATTTAGAGCTGATAGC
Unaligned ( gi|19 ): AAAGAACTACACATAAAGATCCTACTAACTCTCTTCAAGAGAAAT
Unaligned ( gi|20 ): CCTTCATTAAGGTAACAAGATATTTCACGCGTTCACATC
Alignments
lowQualScore : 2222 1 1 111 1 111 11 11 111 3333333333 111 1111 11 11111 11111111 111111 111 111 1 4444444 777777777777777777777777777777777777777777777777777 1 11 111 1 11 1
lowQualScore : 8888 3 6 0 333 0 7 8 3 0 444 8 1 1 11 11 1 444 0 3333333333 3 1 5 999 000 5555 5 5 4444 4 4 9999 55 55 00 55 1 5 4 55 1 4 1 8888 8 11111 1 1 4 4 44 6 8 6666 2 88888888 0 222222 66 55 4 8 4 66 4 4 55 3 111 4 4 66 8 4 4 888 4 4 5 4 88 66 4 1 4 777 1 4 8 0 5 55 5 1 2222222 5 111111111111111111111111111111111111111111111111111 5 11 1 7 22 1 1 1 0 33 777 9 0 33 0 1 3 66 1
lowQualScore : .... . . . ... . . . . . ... . . . .. .. . ... . .......... . . . ... ... .... . . .... . . .... .. .. .. .. . . . .. . . . .... . ..... . . . . .. . . .... . ........ . ...... .. .. . . . .. . . .. . ... . . .. . . . ... . . . . .. .. . . . ... . . . . . .. . . ....... . ................................................... . .. . . .. . . . . .. ... . . .. . . . .. .
lowQualScore : 3333 3 7 0 555 8 0 8 2 8 000 0 4 0 00 00 4 000 8 6666666666 2 6 7 999 000 7777 0 0 0000 0 0 3333 55 55 66 55 0 0 0 55 0 4 0 7777 9 11111 9 1 0 0 99 4 9 0000 8 11111111 2 000000 11 44 0 0 0 33 0 0 55 0 000 4 4 11 9 4 4 777 4 4 0 4 99 11 4 0 4 111 0 4 5 0 0 11 0 3 9999999 7 999999999999999999999999999999999999999999999999999 7 22 0 0 88 0 0 0 0 88 555 2 0 22 0 2 2 55 0
consensus : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAGNAGAAAGTAAAACAGTAAAGTTGACGA---ACG-GACAACANATGA--TTAG--AAA---AGCTTAA-TT------GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-GCC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-C-TGTA-ATC-CCA-TCCA-AAAGT-CGT--TCTTT-TGCANTCAG-CA--NCCTCGTCANAA-TCTGCGAAAT-AAAGAAC-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---TA--C--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNAAGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
Reference ( family-3635 ) : NGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAGNAGAAAGTAAAACAGTAAAGTTGACGA---ACG-GACAACANATGA--TTAG--AAA---AGCTTA--TT------GACCTTATATC-TGA-GATGAAC-TANANTATTTACCACA-CA-T---CGG-AAT-ATCGCA-C--AA--CT--CAAGTCG--TNTATT-TGGG--TCTGTGGTATAACACC-ANGG--C-GT-TGGTTC-----ATCATCCGGGTTCCTGCAGTAGT-TT-TC-CGGTAGAT-CTGCCCCTACGNTGT--------GTGG-----G--TGAGGN-GATTG-GGAC-G-CCCAG-GCC-TGACAAG-TC--CTCCCGGA--TTTC-GTCACGTT-GA--T-TTT-CC-C-C-TGTA-ATC-CCA-TCCA-AAAGT-CGT--TCTTT-TGCANTCAG-CA--NCCTCGTCANAA-TCTGCGAAAT-AAAGAAC-GGCA-TTTCG-ATCAGCACCATTGTCGA-------AAT-TAACA-TN---TA--C--A---T---CA-CAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTNCANCTTTACCATNAAGATCAGCGCCNTCGTCAGGANCTA-CA--AAAT---GAGTAACA-ATG-TTAAC-AATATATATACTTTNTCAGA
gi|1 : ATGTTTAT----GTATTCGGTTAATAGAG-CTGAGTGAATTCTGGTAGGAGAAAGCTAAACAGTAAAGTTGACGA---TCG-AACAATAAATGA--TTAG--AAA---AGCTTAATTT------GACCTTATATCGTGA-GATGAACATAAAATATTTACCACA-CA-TA--TGGAAATAATCGCA-C--AA--TT--CAAGTCG--TATA-T-TGGAACTCTGTGGTATAACA-C-AAGG--T-GT-TGG-TC-----ATTATCCGGGTTCCTGCAGTAGT-TTATC-AGATGATT-CTGCCCCCTTGG-AT--------GTTG-----G--TGGGAT-GATTGAGAAC-G-CCCAGTATC-TGACAAACTC--CTCCCAGATTTTTC-GTCAAGTT-AATGT-CTT-CCGC-C-TGTATATCGCCATTCCA-AAAAT-TGT--TC-TT-TGCACTCGGTTAATTTTTCGTCAAAA-TCTGCCAAATGGGAGAAT-GGTATTTTCGTTTCAGCACCAGTGT--G-------AAT-TAACAGTG---TA--TGGA---T---CACCAC-CA-TTCCGTGAATAT--------ATACAAATTAAAATCAATACTCTCGTCCATCTTCAT--TCAAGATCAGCACCCTTGTCAGGAGCTA-CATCACATTGAAAG-AACAGATGATTAAC-AAACTA-ATACTTTTTCAG
gi|10 : GA-----G--TGAGGA-TATTG-GGAC-G-CCCAG-GCC-TGACAGG-TC--CTCCCGGT--TTTC-GTCACGTT-GA--T-TTT-CC-CGT-TGTA-GTT-CCA-TCCATGAAAT--GT--TCTTT-TGCAATCAG-CA--ACCTCATCAGAG-TCTGTCAAAT-AAAGAAC-AACA-TTTCA-ATggcaaaaaa
gi|11 : gGATGTCTATAGCAGTATT-GGTTGAAAGTGGTGCAGTGA-TTCTT-TAGAAGAT-GTAAAA-A--AAAGTTGACAA---ACA-GATAACATATGA--TTAG--ATA---AGC--------------AATTTAAACC-TGA---------TAGCCTATGTACCTCA-TA-T---GGG-AAC-ATCGCA-T--AA--TTTCCAA--CG--TTTGAT-TGGG--TCTGTGGTAacaaataggagaaggtaacattg
gi|14 : CCC-AAAGT-CGT--TCTTT-TGCATTCAT-GA--TCTTGGTCATTA-TCTGCAAAAT-AAAGAGCAGGC--TATCG-ATTAGCACCATTGTCGAACTATGCAAT-TAACA-TC---T----------T---CA-CAC----T--CGTCAAT-T--------ATAC-
gi|15 : cT-TT-TC-CGGTAGAT-TTGTCCCTATGCTAT--------GAGA-----G--TGAGGA-GACTG-GGAC-G-CCCAA-TCC-TGGCAAG-TT--TTTCCTAA--TATC-GTTTTGCT-GA--TATAT-CC-C-G-CGTA-ATC-
gi|16 : G-GGAC-G-CCCAG-GCC-TGGCAAG-TC--CTCCCAGC--TTCT-GTCACGCT-GA--T-TTT-AC-C-TATGTA-ATC-CCA-TCCC-AAAGT-CGT--TCTTT-TGCAGTCAG-CA--TCCTGGTCATAA-TCTgcttc
gi|17 : G-GAT-ATCGCA-G--TA--CT--GGAAACG--GACAGT-AGCG--TTCACAGTGTAGCACC-ATGG--C-CTCTCGTT------ATAGTCGGGGTTTCTGCAGTAAT-TA-TC-
gi|2 : ATATG-TGA-GGCGAGC-TATACAATTTACCACA-CA-T---AGG-GAT-ATCGCA-C--AT--CT--CAAATCG--TACACC-TGGG--TCTGTGGTATAACACC-ATGG--C-GT-TGGTTC-----AGAATCCGGATTTCTACAGTAGT-TT-CC-CGGTAAATACT-TCCCTACTTCGT--------GTTT-----G--TGAGGT-GATTG-GGAC-G-CCCAG-GCC-TGGCAAG-TC--CTCCCAGA--TTCT-GTCACGCT-GA--T-TTTACC-T-C-TGTA-ATC-CCA-TCCC-AAAGT-TGT--TCTTT-TGCATTCAG-CA--TCCTGGTCATAA-ACTGCGAAAT-AAAGAAC-GGCC-TTCCG-ATTAGCACCATTGTCAAAATATACAAT-TAACA-TA---T----------T---CA-TAC----T--CGTCAAA-T--------ATAC-AATCAAAGTCAATACTGTCGTGAAACTTTACCATAAAGATCAGCGCTATCGTCAACATCTACCA--AAAT---GAGTAACA-ATG--TAACGAACATATATATTTTGTTAGAgtgct
gi|3 : aGATGTTTAT----GTATT-GGTTAATAGAGGCGGAGTGA-TTCTG-TAG-AGAAAGTAAAACAGTAAAGTTGACGA---ACG-AACAATAAATGA--TTAG--AAA---AGCTTAA-TT------GACCTTATATC-TGA-GATGAAC-TAAAATATTTACCACA-CA-T---TGG-AAT-ATCGCA-C--AA--TT--CAAGTCG--TATATT-TGGA--TCTGTGGTATAACACC-AAGG--T-GT-TGGTTC-----ATTATCCGGGTTCCTGCAGTAGT-TT-TC-AGATTGAT-CTGCCCCTATGGTGT--------GTGA-----G--TGGGGT-GATTG-AGAC-G-CCCAG-TTC-TGACAAA-CT--CTCCCAGA--TTTC-GTCAAGTT-AA--TGTTT-CC-C-C-TGTA-TTC-CCA-TCCA-AAAAT-TGT--TCTTT-TGCAATCAG-TA--ATCTCGTCAAAA-TCTGC-AAATGGAGGAAT-GGTA-TTTCG-ATCAGCACCAGTGTTGA-------AGT-TAACA-TG---TA--TG-A---T---CACCAC-CA-T--CGTGAAT-T--------ATAC-AATTAAAATCAATACTCTCGTCCATCTT---CATTCAGATCAGCACCCTTGTCAGGAGCTA-CA--TAAT---GAAGAACA-ATG-TTAAC-AATA-AT-TACTTTTTCAGAatgcacaaaatagaggtccgtttcgataagcagtctcgtcaaatttagaagaagaaatgccacatccataaatgatcttacttcggatgatccaaagagatttacatcttt
gi|4 : tGTGA-TCCTA--AGTGGAAGTTAAAAAAACAAAGGTG-CAATCCATGTGCCTACAGATGAGCTCATCTAAA---AGCTTA--TT------GAG---------TGA-G-TGAAC-TATAAAACTTACCACAACA-TTCGCGG-AAT-GTCGCAAC--AAATCT--CCAGTCGGTTTTGTTATGGG--TCTGTGGTATA-CACCGAAGG--CCGT-TGGATCGGGGAATCA--CGGGTTC-TACAGTAGTATT-TC-TGGT-GAT-AGGTCC-TACGCTGT--------GGGG-----G--TGAGGATGTTTG-GGACCG-CCCAG-GCCCTGGCAGG-TC--CTTCCGCT--TTTC-GTCACGTTCGA--T-TTT-CC-CGA-TGTA-ATT-CCA-TCCA-TGAGTACGA--TCTTTGTGCAATCAG-CA--ACCTCGCCAGAAGTCTGTAAAAT-AAACAAC-ACCA-TTTCA-A
gi|5 : TTAGATC-TGAAGCTGAAA-TAAACTATCTACCACA-GAAT---CGG-AAT-AT-G-A-G--AA--TT--CCA--CG--TTTCAT-TGGG--TTTGTAGTGTAACATC-AGGG--A-GCCTGGTTC-----AACTTACGGGTTC-TGCAGTAGT-TT-GT-CG-TAGATGCTGCCC------TGT--------GTGGTGACTA--TGAGGT--ATTG-AGAC-G-CC-AG-ACC-TGACACG-TC--CTCCCTG---TTTCAGTCACGTT-GA--T-TTT-AC-C-T-TG----TT-CCA-TCCA-AGAGT-TGTTGTTTTT-TGCATTCAG-CA--ACCTCGTAAGGA-T-TGCGGAAA-AAAGAAA-GGCA-TTTCG-ATCAGGGCCATTGTCGAT------GATATAGCA-TT---TAACC--ATCTT---CA-CAC-TATT--CAAGA---T--------ATAC-AACGAAAATCAatacaataaagcaaaggtccacatatgtatatatacagaaatgaaaaatttcaattgcaaatctaacaatgaacatcaac
gi|6 : TACCACA-CA-T---CGG-GAT-ATCACA-T--AA--CT--CAAGTCG--TTTATT-TGGG--TCTGTAGTGTAACACC-ATGG--T-GT-TGATTC-----ATAATCTGGGTTCCTGCAGTAGT-TT-TC-TGGTAGAT-CTGTCCATGCGGTGT--------GGGT-----G--TGAGGG-GATTG-AGAT-G-CCCAG-ACC-TGACAAG-TT--CTCCCAGA--TATT-GTCACGTT-GA--T-TTT-TC-CAC-TGTA-ATC-CCA-ACCA-TACGT-TGT--TCTTT-TGCAATTGG-GA--TCCTCATTATAG-TCTGCAAAAT-A---ATC-GACA-TTTCT-A-CA--------ATCAA-------AAT-CAGCA----------------------A-CCT-CA-T--CA-GAG-----------ATAT-TATTAAAGTAAACACTCT
gi|7 : ACCATTGTCGA-------AAT-TAACA-ACAATTA--C--AA--TGAACA-CATTCA-TA-CGTGAAC-TCATTAAATATAC-AATCAGTAGCAACACTATTGTGTAACTTTACCATAATGATCAGCGCCATCATCAAGATCTA-CG--AAAT---GAGTAACA-ATG-TTACA-AATATATATATTTTGTCAGA
gi|8 : AGTAACGTTGACGA---ACG-GATAAGATATGA--TTAC--ATATGTAGATCA--TTTCATTCGACCTGATAGC-TGA-GATAA---------------CATA-AA-T---CGG-AAT-ATCGCA-T--AA--CT--CATATCG--TTTATC-TGGG--TCTGTGGTATATCACC-ATGG--C-GT-TGGTTC-----ATCACTCGGGTTCCTACAGTAGT-TT-TC-CGGTAGAT-Catgcacaaatagagagctctttcagtatgcaacctttcctaatttataagaattgttacatgctccaaagagaattacatctttca
gi|9 : GG-GAT-ATCACA-CTGGG--TC--CAA--CG--AACATT-CGGG--TTTACGGTGTAACACC-AGGGGGC-GC-T--TCC-----GCCATCCGGGTTCCGGCAGTAAT-TT-TCTTGGT--------CACCTA-GTTGTCCATTTCCGTGG-----GTATGTGGC-GACTG-G--CTGTCCCAT-CTC-TGAC-AC-TCATCTCCCG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTTTGTCAGAATGCACAAAATAGAGGAACGTTTCGATAACAGCTTCGTCAAATTTAGAAGAAGATTGCCACATCAATGAATGATCTTACCTCGGATTATCCAAAGAGATTTACATCTTTAT
Unaligned ( gi|13 ): TTGTCAAAATCTACAAAAGAGAGAAAGATTACAATAAGCAAAGCTCCTCAAATTTAGAAAAAAAAACCTCTAAAGAACTACACATAAAGATCCTACTGACTCTCTTCAAGAGAAATATACA
Unaligned ( gi|18 ): TGGTTCAGCGATTCTTAAGAAGAAGTATAAAAAAGGAAAAGATGGCAAATGTGCATTACATGAGTAGGTACGGAATTTAGAGCTGATAGC
Unaligned ( gi|19 ): AAAGAACTACACATAAAGATCCTACTAACTCTCTTCAAGAGAAAT
Unaligned ( gi|20 ): CCTTCATTAAGGTAACAAGATATTTCACGCGTTCACATC