lowQualScore : 111111111111 22222222222
lowQualScore : 5 1 7 4444 7 5 1 222222222222 555555 22222222222 1 3 3 1 22 2
lowQualScore : . . . .... . . . ............ ...... ........... . . . . .. .
lowQualScore : 7 9 6 0000 6 7 9 555555555555 222222 88888888888 7 6 6 9 66 0
consensus : AGTCTCGATCATCCAGACG-T-TT-G----TC-TT-AT-C------A-NN--C------GAAC------G-ATGA-G-TCGAA-GCGTT--TTGAT-GATCAAGA
Reference ( gi|4 ) : AGTCTCGATCATCCAGACG-T-TT-G----TC-TT-AT-C------A-TA--C------GAAC------G-ATGA-G-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|3 : AGTCTCGATCATCCAGACG-T-TT-A----TC-TT-AT-C------A-TA--C------GAACTTCGCGA-ATGA-G-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|10 : tAGTCTCGATCATCCAGACG-T-TT-G----TC-TT-AT-C------A-TA--C------GA----------ATGA-G-TCGAA-TCGTT--TTGAT-GATCAAGAc
gi|6 : AGTCTCGATCATCCAAACG-T-TT-G----TCTTT-AT-C------A-GA--C------GAACT-----A-ATGA-G-TCGAA-GCGTT--TTGAT-GATCA
gi|7 : AGTCTCGATCATCCAGACG-T-TT-G----TCTTT-AT-C------A-GACCC------GA----------ATGA-G-TCGAA-GCGTC--TTGAT-GATTAA
gi|17 : AGTCTCGATCATCCAGACG-C-TT-G----TC-TT-AT-C------A-GA--C------G--C------GAATGA-G-TTG
gi|18 : AGTCTCGATCATCCAGACG-T-TT-A----TC-TT-AT-C------A-GA--C------
gi|3 : tGTCTTGATCATCAAAACGCT-TC-G----AC-TC-AT-TCGCGAAG-TT--C------GTAT------G-ATAA-GAT--AA-ACGTC--TGGAT-GATCGAGA
gi|11 : tagGTCTCGATCATCCAGATG-T-TT-G----TC-TTTAT-C------A-GG--C------GAAC------G-A----G-TCGAA-GCGTT--TTGAT-GATCAAG
gi|8 : GTCTCGATCATCCAGACG-T-TT-GGGTTTT-TT-TT-C------A-GA--T------GAAC----------GA-G-TCGAA-GCGTC--TTGAT-AATCAA
gi|15 : GTCTCGATCA-CCAGACG-T-TT-G----TC-TT-------------CG--C------GAA----------TGA-G-TCGAAAGCGTT--TTGAT-GGTCAAG
gi|10 : TCTTGATCATCAAAACGAT-TC-G----AC-T-----C------A-TT--C------GTAT------G-ATAA-G-ACAAA--CGTC--TGGAT-GATCGAGA
gi|12 : agTTTCAATCATCCAGACG-T-TT-G----TC-TT-AT-C------A-TT--C------G--C------GAATGA-G-TCGAA-GCGTT--TTGAT-GATCAA
gi|16 : TCTCGATCATTCAGACG-T-TT-G----TCTTT-AT-C------A-GA--C------GAAC------G-A-GA----CGAA-GCGTC--TT
gi|5 : CTCGATCATCCAAACG-T-TTTG----TC-TTTAT-C------A-GA--C------GAACT-----A-ATGA-G-TCGAA-GCGTT--TTGAT-GATCAAG
gi|5 : CTTGATCATCAAAACG-C-TTCG----AC-TC-AT-T------AGTT--C------GTCT------G-ATAAAG-ACAAA-ACGTT--TGGAT-GATCGAG
gi|14 : CTCGATCATTCATACG-T-TT-G----TC-TTCAT-C------A-GA--C------GAAC------G-A----G-TCGAA-GCGTC--TTGAT-GATCA
gi|12 : cTTGATCATCAAAACGCT-TC-G----AC-TC-AT-T--------CG--C------GAAT------G-ATAA-G-AC-AA-ACGTC--TGGAT-GAT
gi|8 : tttcaTTGATTATCAAGACG-C-TTCG----AC-TC-GTTC------A-TC--T------GAAA------A-A-AA-A-CCCAA-ACGTC--TGGAT-GATCGAGA
gi|9 : gTCGATCATCCAGACG-T-TT-G----TCTTT-AT-G------A-GA--CCTTCGTGAAC---------CGA-G-TCGAA-GCGTT--TTGAT-GATCA
gi|6 : GATCATCAAAACG-C-TTCG----AC-TC-AT-T------AGTT--C------GTCT------G-ATAAAG-ACAAA--CGTT--TGGAT-GATCGAGA
gi|13 : agCAGACG-TATT-G----TC--------------A-TT--C------GGA---------ATGA-GGTCGAA-GCGTTTGTTGATCGGTCAAa
gi|1 : --C------GAA---------ATGA-G-TCGAA-GCGTT--TTGAT-GATCAAGAagaacggtaac
gi|2 : cgaggcgctatctggcgtttaacttttaactatataattggtcaagacgcttcg-ATGA-G-TCGAA-GCGTT--TTGAT-GATCAAGA
Alignments
lowQualScore : 22222222222222
lowQualScore : 2 2 2 5555 9 7 33 22 666666 77777777777777 2 2 33 2
lowQualScore : . . . .... . . .. .. ...... .............. . . .. .
lowQualScore : 4 4 4 0000 4 1 22 00 444444 22222222222222 2 4 22 7
consensus : AGTCTCGATCATCCAGACG-T-TT-G----TC-TT-ATC--AGAC------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
Reference ( family-3597 ) : AGTCTCGATCATCCAGACG-T-TT-G----TC-TT-ATC--ANNC------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|1 : C------GAA---------A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|10 : cgaggcgctatctggcgtttaacttttaactatataattggtcaagacgcttcgAGTCTCGATCATCCAGACG-T-TT-G----TC-TT-ATC--ATAC------GA----------A-TGAG-TCGAA-TCGTT--TTGAT-GATCAAGA
gi|11 : GTCTCGATCATCCAGATG-T-TT-G----TC-TTTATC--AGGC------GAAC------G-A----G-TCGAA-GCGTT--TTGAT-GATCAAG
gi|12 : TTTCAATCATCCAGACG-T-TT-G----TC-TT-ATC--ATTC------G--C------G-AATGAG-TCGAA-GCGTT--TTGAT-GATCAA
gi|13 : CAGACG-TATT-G----TC---------ATTC------GGA---------A-TGAGGTCGAA-GCGTTTGTTGATCGGTCAA
gi|14 : CTCGATCATTCATACG-T-TT-G----TC-TTCATC--AGAC------GAAC------G-A----G-TCGAA-GCGTC--TTGAT-GATCAagaacggtaac
gi|15 : cGTCTCGATCA-CCAGACG-T-TT-G----TC-TT-------CGC------GAA-----------TGAG-TCGAAAGCGTT--TTGAT-GGTCAAG
gi|16 : TCTCGATCATTCAGACG-T-TT-G----TCTTT-ATC--AGAC------GAAC------G-A--GA---CGAA-GCGTC--TT
gi|17 : AGTCTCGATCATCCAGACG-C-TT-G----TC-TT-ATC--AGAC------G--C------GAA-TGAG-TTG
gi|18 : AGTCTCGATCATCCAGACG-T-TT-A----TC-TT-ATC--AGAC------
gi|2 : tGTCTTGATCATCAAAACGCT-TC-G----AC-----TC--ATTC------G-------------------CGAA-GCGTC--TTGA
gi|2 : gaggcgccatctggcgtttacttttaactatagaattgg-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|3 : gaggcgccatctggcgtttacttttaactatagaattggtcaagacgcttcgcgaAGTCTCGATCATCCAGACG-T-TT-A----TC-TT-ATC--ATAC------GAACTTCGCGA-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGAc
gi|4 : tAGTCTCGATCATCCAGACG-T-TT-G----TC-TT-ATC--ATAC------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGAc
gi|5 : CTCGATCATCCAAACG-T-TTTG----TC-TTTATC--AGAC------GAACT-----A-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAG
gi|6 : AGTCTCGATCATCCAAACG-T-TT-G----TCTTT-ATC--AGAC------GAACT-----A-A-TGAG-TCGAA-GCGTT--TTGAT-GATCA
gi|7 : AGTCTCGATCATCCAGACG-T-TT-G----TCTTT-ATCAGACCC------GA----------A-TGAG-TCGAA-GCGTC--TTGAT-GATTAA
gi|8 : GTCTCGATCATCCAGACG-T-TT-GGGTTTT-TT-TTC--AGAT------GAAC-----------GAG-TCGAA-GCGTC--TTGAT-AATCAA
gi|9 : TCGATCATCCAGACG-T-TT-G----TCTTT-ATG--AGACCTTCGTGAAC----------CGAG-TCGAA-GCGTT--TTGAT-GATCA
Alignments
lowQualScore : 1 2222222222
lowQualScore : 2 2 5555 0 7 33 666666 4444444444 44 2 2 33 2
lowQualScore : . . .... . . .. ...... .......... .. . . .. .
lowQualScore : 5 5 3333 0 5 22 888888 2222222222 33 4 5 44 7
consensus : AGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCAGA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
Reference ( family-3597 ) : AGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCAGA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|1 : --C------GAA---------A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|10 : cgaggcgctatctggcgtttaacttttaactatataattggtcaagacgcttcgAGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCATA--C------GA----------A-TGAG-TCGAA-TCGTT--TTGAT-GATCAAGA
gi|11 : GTCTCGATCATCCAGATGT-TT-G----TC-TTTATCAGG--C------GAAC------G-A----G-TCGAA-GCGTT--TTGAT-GATCAAG
gi|12 : TTTCAATCATCCAGACGT-TT-G----TC-TT-ATCATT--C------G--C------G-AATGAG-TCGAA-GCGTT--TTGAT-GATCAA
gi|13 : CAGACGTATT-G----TC-AT--TCGGA---------------------A-TGAGGTCGAA-GCGTTTGTTGATCGGTCAA
gi|14 : CTCGATCATTCATACGT-TT-G----TC-TTCATCAGA--C------GAAC------G-A----G-TCGAA-GCGTC--TTGAT-GATCAagaacggtaac
gi|15 : cGTCTCGATCA-CCAGACGT-TT-G----TC-TT---CG----C------GAA-----------TGAG-TCGAAAGCGTT--TTGAT-GGTCAAG
gi|16 : TCTCGATCATTCAGACGT-TT-G----TCTTT-ATCAGA--C------GAAC------G-A--GA---CGAA-GCGTC--TT
gi|17 : AGTCTCGATCATCCAGACGC-TT-G----TC-TT-ATCAGA--C------G--C------GAA-TGAG-TTG
gi|18 : AGTCTCGATCATCCAGACGT-TT-A----TC-TT-ATCAGA--C------
gi|2 : t-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|3 : gaggcgccatctggcgtttacttttaactatagaattggtcaagacgcttcgcgaAGTCTCGATCATCCAGACGT-TT-A----TC-TT-ATCATA--C------GAACTTCGCGA-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGAc
gi|4 : tAGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCATA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGAc
gi|5 : CTCGATCATCCAAACGT-TTTG----TC-TTTATCAGA--C------GAACT-----A-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAG
gi|6 : AGTCTCGATCATCCAAACGT-TT-G----TCTTT-ATCAGA--C------GAACT-----A-A-TGAG-TCGAA-GCGTT--TTGAT-GATCA
gi|7 : AGTCTCGATCATCCAGACGT-TT-G----TCTTT-ATCAGACCC------GA----------A-TGAG-TCGAA-GCGTC--TTGAT-GATTAA
gi|8 : GTCTCGATCATCCAGACGT-TT-GGGTTTT-TT-TTCAGA--T------GAAC-----------GAG-TCGAA-GCGTC--TTGAT-AATCAA
gi|9 : TCGATCATCCAGACGT-TT-G----TCTTT-ATGAGA--CCTTCGTGAAC----------CGAG-TCGAA-GCGTT--TTGAT-GATCA
Alignments
lowQualScore : 1 2222222222
lowQualScore : 2 2 5555 0 7 33 666666 4444444444 44 2 2 33 2
lowQualScore : . . .... . . .. ...... .......... .. . . .. .
lowQualScore : 5 5 3333 0 5 22 888888 2222222222 33 4 5 44 7
consensus : AGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCAGA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
Reference ( family-3597 ) : AGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCAGA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|1 : --C------GAA---------A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|10 : cgaggcgctatctggcgtttaacttttaactatataattggtcaagacgcttcgAGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCATA--C------GA----------A-TGAG-TCGAA-TCGTT--TTGAT-GATCAAGA
gi|11 : GTCTCGATCATCCAGATGT-TT-G----TC-TTTATCAGG--C------GAAC------G-A----G-TCGAA-GCGTT--TTGAT-GATCAAG
gi|12 : TTTCAATCATCCAGACGT-TT-G----TC-TT-ATCATT--C------G--C------G-AATGAG-TCGAA-GCGTT--TTGAT-GATCAA
gi|13 : CAGACGTATT-G----TC-AT--TCGGA---------------------A-TGAGGTCGAA-GCGTTTGTTGATCGGTCAA
gi|14 : CTCGATCATTCATACGT-TT-G----TC-TTCATCAGA--C------GAAC------G-A----G-TCGAA-GCGTC--TTGAT-GATCAagaacggtaac
gi|15 : cGTCTCGATCA-CCAGACGT-TT-G----TC-TT---CG----C------GAA-----------TGAG-TCGAAAGCGTT--TTGAT-GGTCAAG
gi|16 : TCTCGATCATTCAGACGT-TT-G----TCTTT-ATCAGA--C------GAAC------G-A--GA---CGAA-GCGTC--TT
gi|17 : AGTCTCGATCATCCAGACGC-TT-G----TC-TT-ATCAGA--C------G--C------GAA-TGAG-TTG
gi|18 : AGTCTCGATCATCCAGACGT-TT-A----TC-TT-ATCAGA--C------
gi|2 : t-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|3 : gaggcgccatctggcgtttacttttaactatagaattggtcaagacgcttcgcgaAGTCTCGATCATCCAGACGT-TT-A----TC-TT-ATCATA--C------GAACTTCGCGA-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGAc
gi|4 : tAGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCATA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGAc
gi|5 : CTCGATCATCCAAACGT-TTTG----TC-TTTATCAGA--C------GAACT-----A-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAG
gi|6 : AGTCTCGATCATCCAAACGT-TT-G----TCTTT-ATCAGA--C------GAACT-----A-A-TGAG-TCGAA-GCGTT--TTGAT-GATCA
gi|7 : AGTCTCGATCATCCAGACGT-TT-G----TCTTT-ATCAGACCC------GA----------A-TGAG-TCGAA-GCGTC--TTGAT-GATTAA
gi|8 : GTCTCGATCATCCAGACGT-TT-GGGTTTT-TT-TTCAGA--T------GAAC-----------GAG-TCGAA-GCGTC--TTGAT-AATCAA
gi|9 : TCGATCATCCAGACGT-TT-G----TCTTT-ATGAGA--CCTTCGTGAAC----------CGAG-TCGAA-GCGTT--TTGAT-GATCA
blockSeqs : A T GGTT T T CC CTTCGT ACTTCGCGA AT G A TG C
blockSeqs : . . . T C . . ACTA T . . . .
blockSeqs : . . . T T . . ACTA T . . . .
blockSeqs : . . . T . . . ACG T . . . .
blockSeqs : . . . . . . . ACG T . . . .
blockSeqs : . . . . . . . ACG T . . . .
blockSeqs : . . . . . . . CGA T . . . .
blockSeqs : . . . . . . . ACG T . . . .
blockSeqs : . . . . . . . CG T . . . .
blockSeqs : . . . . . . . AC T . . . .
blockSeqs : . . . . . . . AC T . . . .
blockSeqs : . . . . . . . A C . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ACG*******
originalCons : AGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCAGA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
finalCons : AGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCAGA--C------GAACG-------A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
Alignments
lowQualScore : 1 2222222222
lowQualScore : 2 2 5555 0 7 33 666666 4444444444 44 2 2 33 2
lowQualScore : . . .... . . .. ...... .......... .. . . .. .
lowQualScore : 5 5 3333 0 5 22 888888 2222222222 33 4 5 44 7
consensus : AGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCAGA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
Reference ( family-3597 ) : AGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCAGA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|1 : --C------GAA---------A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|10 : cgaggcgctatctggcgtttaacttttaactatataattggtcaagacgcttcgAGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCATA--C------GA----------A-TGAG-TCGAA-TCGTT--TTGAT-GATCAAGA
gi|11 : GTCTCGATCATCCAGATGT-TT-G----TC-TTTATCAGG--C------GAAC------G-A----G-TCGAA-GCGTT--TTGAT-GATCAAG
gi|12 : TTTCAATCATCCAGACGT-TT-G----TC-TT-ATCATT--C------G--C------G-AATGAG-TCGAA-GCGTT--TTGAT-GATCAA
gi|13 : CAGACGTATT-G----TC-AT--TCGGA---------------------A-TGAGGTCGAA-GCGTTTGTTGATCGGTCAA
gi|14 : CTCGATCATTCATACGT-TT-G----TC-TTCATCAGA--C------GAAC------G-A----G-TCGAA-GCGTC--TTGAT-GATCAagaacggtaac
gi|15 : cGTCTCGATCA-CCAGACGT-TT-G----TC-TT---CG----C------GAA-----------TGAG-TCGAAAGCGTT--TTGAT-GGTCAAG
gi|16 : TCTCGATCATTCAGACGT-TT-G----TCTTT-ATCAGA--C------GAAC------G-A--GA---CGAA-GCGTC--TT
gi|17 : AGTCTCGATCATCCAGACGC-TT-G----TC-TT-ATCAGA--C------G--C------GAA-TGAG-TTG
gi|18 : AGTCTCGATCATCCAGACGT-TT-A----TC-TT-ATCAGA--C------
gi|2 : t-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGA
gi|3 : gaggcgccatctggcgtttacttttaactatagaattggtcaagacgcttcgcgaAGTCTCGATCATCCAGACGT-TT-A----TC-TT-ATCATA--C------GAACTTCGCGA-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGAc
gi|4 : tAGTCTCGATCATCCAGACGT-TT-G----TC-TT-ATCATA--C------GAAC------G-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAGAc
gi|5 : CTCGATCATCCAAACGT-TTTG----TC-TTTATCAGA--C------GAACT-----A-A-TGAG-TCGAA-GCGTT--TTGAT-GATCAAG
gi|6 : AGTCTCGATCATCCAAACGT-TT-G----TCTTT-ATCAGA--C------GAACT-----A-A-TGAG-TCGAA-GCGTT--TTGAT-GATCA
gi|7 : AGTCTCGATCATCCAGACGT-TT-G----TCTTT-ATCAGACCC------GA----------A-TGAG-TCGAA-GCGTC--TTGAT-GATTAA
gi|8 : GTCTCGATCATCCAGACGT-TT-GGGTTTT-TT-TTCAGA--T------GAAC-----------GAG-TCGAA-GCGTC--TTGAT-AATCAA
gi|9 : TCGATCATCCAGACGT-TT-G----TCTTT-ATGAGA--CCTTCGTGAAC----------CGAG-TCGAA-GCGTT--TTGAT-GATCA