lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111 1111111111111111111111111111111111111111111111111111111111111 111111111111111 3333333333333333333333 1111111111111 2222222222222222 1111111111111111
lowQualScore : 33 11111111 77777777 1 222222 1 333 111 222222 1 11 111 222222 111111 1 1 555555555555 2222 1111 1 1 11 1 1111 2222222 11 1 22222222222222 11 11 1 1 444 666666666 1 5555555555555555 333333 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 444 1 1 1 2 444444444444444444 33333 1 1 222 1 2222 2 1 1 1 222 2 1 111 3333333333333333333333333333333333333333333333333333333333333 33333 222 555555555555555 2 11 5555555555555555555555 1 1 1 1 11 888888888888888888 9999999999999 1 888888888888888888888 1 1 8888 6666666666666666 333 2222222222222222
lowQualScore : 0 44 0 88888888 6 66666666 2 5 000000 3 6 5 111 888 888 333333 3 5 8 8 6 0 8 88 1 7 6 99 6 000 9 777777 999999 6 99 0 2 5 777777777777 7777 55 0 4444 2 0 0 2 33 0 7777 8 8 0000000 8 0 0 5 8 2 6 33 0 0 99999999999999 88 88 3 3 000 777777777 0 5 9999999999999999 4 3 777777 0 6 6 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4 5 444 1 3 3 5 3 5 6 0 6 6 777777777777777777 7 55555 3 2 222 6 3 4444 4 3 3 7 111 6 0 2 0 666 9999999999999999999999999999999999999999999999999999999999999 6 7 7 33333 555 0 666666666666666 0 3 77 3 7 666 6 8 33 3 2 6 1 5555555555555555555555 0 5 3 5 5 5 3 4 6 4 22 2 4 666666666666666666 5555555555555 6 6 5 222222222222222222222 5 7 5555 6 6666666666666666 6 6 6 666 3333333333333333
lowQualScore : . .. . ........ . ........ . . ...... . . . ... ... ... ...... . . . . . . . .. . . . .. . ... . ...... ...... . .. . . . ............ .... .. . .... . . . . .. . .... . . ....... . . . . . . . .. . . .............. .. .. . . ... ......... . . ................ . . ...... . . . . ............................................................................................ . . ... . . . . . . . . . . .................. . ..... . . ... . . .... . . . . ... . . . . ... ............................................................. . . . ..... ... . ............... . . .. . . ... . . .. . . . . ...................... . . . . . . . . . . .. . . .................. ............. . . . ..................... . . .... . ................ . . . ... ................
lowQualScore : 7 00 7 55555555 7 88888888 2 0 222222 3 7 0 555 333 777 333333 8 0 0 0 0 8 0 33 0 3 7 22 7 222 3 000000 222222 7 22 8 8 0 000000000000 2222 88 2 8888 2 0 0 2 88 0 0000 0 0 6666666 4 8 8 0 0 8 0 88 0 8 33333333333333 33 33 3 3 333 888888888 8 0 2222222222222222 5 2 222222 7 0 7 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 555 5 0 0 5 0 0 0 0 0 0 555555555555555555 3 33333 3 0 000 0 3 7777 7 3 3 0 000 0 0 5 0 888 2222222222222222222222222222222222222222222222222222222222222 7 3 3 33333 777 7 777777777777777 0 0 00 0 3 333 0 8 88 0 5 0 0 0000000000000000000000 7 0 7 0 0 0 0 0 0 0 00 5 0 000000000000000000 0000000000000 0 0 0 000000000000000000000 0 0 0000 0 0000000000000000 0 0 0 000 0000000000000000
consensus : ATTCATTGTGTTTAATTGGAATTATTCTAGATAA--C-----TAAAA-GTATTGCACGGAAGACAATA----TGGTTATTGACAAGCTAGCAC----TCGCACTTNGGGAGTTCAGAAATCTTGGGAA-ATGCTCGAACAC---TTCG-A-CAATA---TACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC--A----A----TACTC-TGATGAAGAAACCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGAGTGAAAATCTTGTGGCGTA-GGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTTG-TGA-CAA-AATCAC--TG--GA-TATTG-TTT-NTATAAAAGC----G-GTAAGGAAAAGTCTTGG----AT----CTATTGGTCCAAAGAAAGGTATTATATAG----AATACGCAATTAAAATTACCAATGACGATTGAGGG-AT--TTCA-TTG--T--TAATT-TACAT-T-TTAC-----CCGAAAGACGAGANCACTCCACCCTCCCCCCTCCTCAACAAAATTGAGGTTAGGCAGNGAATACGCCCANCCNCCCNCCCCCTTTCCCGGGATTTNAAATCGAAGCTCATGGGGGAAACTGAGGCTGGATAGTTACTGATTATATTATTATAACTGCTTGCCACCCTCTC----CCCACCCCA-CAATTTAGGATN--TTGAAATTT-GGACAAGT-ACAAAAGT-AAGTCGTA-ATCTTCAGNGTCTGGTCCCCCTTTCCANTC-AAAAAAAA-CC------N-CGTGACG---CGTTTTACATAATGCATTCACTTTGTCC-CA--A-GTCTA--GTGGACAAAGTGAATGCATTAT-----GTAAAAT--ACATGGATTTTTTTC--GGGG--T--CTTGTGATGACTTCGAGANCCNNTGGAATATGCCCTGANCATGACGGAGAAAACAATACGGCTGGGGCACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATANTCCCAAGGCATCAANATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGATTGCAAACGNCAGAGTGAAAATAATCGATGGCACCGTCTCGGNGNGCACTTCCTGNTCGGCAGTGNCNCAAGAGAGACGAGTCAAATNCTCGCAACCAAATGTTTTTATTACCGGTATATTCCTTAAAAGTTGTGTCGTCTGTCTTTTCGAG---TTAATATAAATGTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTACTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATTAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCATAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGTTCGGTTTTGCAGTTGAG--AGTGATTTTTTAAATGTTTGAAAACACCATGACAT
Reference ( gi|1 ) : ACTCATTGTGTAAAATTGGAATTATTCTAGATGA--C-----TAAAA-GTATTGCACGGAAGACAATA-CTGTAGTCATTGACACGCTAGCAC----TGGCACTTAGGGACTTAAGAAATCTTGGGAA-TAGCTCAAACAC---TTCG-A-CATTA---TACAAGTAGGGTAGGCGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CA--ACCAGAAAC------ATTC-TCTTT--GAATAGAAAATC--A----A----TACTT-TGATGAAGAAACCAGCACA--A-AAATTATG-ATATGT-CGAAAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATATTGTGGCGTA-GGGGGGCTGAGACGTGCTTT--AGT-TTTAGCAAA-GTTGGTGACCAAAAATCAC--TG--GA-TATTG-TTG-GTATAAAAGTACATGTATAAGGAAAAGTCTTGG----AT----CGGTTTGTTCAAAGAAAGGTATTATATAT----AATGCACAATTAAAATGACCAATGACGATTAAGGG-ATTATTCATTTG--TATCAATT-TACAT-TATTAC-----CCG-AAGACGAACTCACCCCACCCGCCCCCCTCCTCAACATAA--------AGGTAGTAACTATA-CCATCCACCCACCCCCTTTTCCAGGATTTAAAATAGAAGCCCA-GAGGGAAATTGAGACTGGATAGT------------------AACTGCTTGCTACCCTCTA----CCCACCCCA-CAATTTAGGATG--TTGAAGTTT-GGACACGTGACAAATGT-AAGTCGTA-ATCATCAGTG-CTGATCCCCCTTTC-AGTT-AAAAAAAA-CC------T-CGTAGCAT--CGTTTTACATATTCCATTCACTTTGTCCACA--A-GTCTA--GTGGACAAAGTGAATGCATTAT-----GTAAAAT--ACATGGGTTTT---------------CTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGGACAGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTTTAATTCGGTTGACAAGAATAACTTTGAATCTCGAA----------------------AGATCATGCTTTCGGTTGAAAACGCCAGAGTGAACATAATCACTGGCACCGTATCGGTGTGCGCTTCCTGATCGGCGATGGCACA----AGTCGA---AAATCCTCGCAACCAAATG-----------GTTATATTCCTTAAAGGTCGTGTCGTCTGTCTTGTCGTGCCTTTCATAAAAAATTAA-TGATTACAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTAATGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATAAACATCTAT----TCAAAGACTAGAGTTATTTATTCATTCACAGGG--------A-------TTTCTTCTCTTTCATTTGCTATATTTTGCAGTTGGGTAAGTGATTTTTCCAATGTTTGAAAACACCATGACATTT
gi|4 : ACTCATTGTGCTTAATTGGAATTATTCTAGATAA--C-----TAAAA-GTATTGCACGGAAGAC------TATGGTTATGGACAAGCTGGCAC----TCGCACTTAGGAAGTTCAGAAATCTTGGGAA-ATGCTCAAACAC---TTCG-A-CAATA---TACAAGTAGGGTAGAAGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-ACG-----------TT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTCTTAAAATA----TACTTATGA--AAAAAATCAGCACA--A-AATTCATG-AAATGT-CGAGAATTT--GA-CAAAA----AACCCTGTG-TGGC-GTAGGG-----GAGTGAAAATATTGTGGCGTA-GGGGGACTGAAACGCGCTTT--AGT-TTTAGCAAA-G--------------TCAC--TG--GA-TATTGTTTT-ATATAAAA------GTGTAATGAAAAGTCTTGG----AT----CATTTTGTTCAAAGAAAGGTATTATATATATAGAATACGCAATTAAAATTACCAATGACGATTGAGGGTAT--TTTATTTG--T-TTAATT-TACACGTATCCC-----CC
gi|8 : ccaccgcgtacaacgccacatgcggggaccgtgattggtgtagcgcggggtttgtgaatttgaagcggagaatgtaggtcggtaagtgttcaaagATTCATTGTGTTTAATTGGAATTATTCTAGATGA--C-----TAAAA-GTATTGCATGGAAGACAATA------GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAA-ATGCTCGAACAC---TTTG-A-CAATA---TACAAGTAGGGTAGGCAGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-TTTTT--GAATGGAAAcccccccccac
gi|9 : caccgtgtacaatgccacatgcggggaccatgattggtgtagcgcggggtgtgtgaatttgaagtggagaaagtcggttggtaagtatatattcaaagATTCATTGTGTTTAATTGGAATTATTCTAGATGA--C-----TAAAA-GTATTGCATGGAAGACAATA------GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAA-ATGCTCGAACAC---TTTGAA-CA-TA---TACAAGT-GGGTAGGCAGCG-AGTG-TATTTTTTCGGTGTAT-CCTGGATAAGAAATCTTGA-TTTCT--GC-GCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTCTTTTTT--GAATGGAAAct
gi|5 : caccgtgtacaatgccacatgcggggaccatgattggttagcggcggggtgtgtgaatttgaagtggagaaagtcggttgtaagttattattcaaagATTGTGTTTAATTAAAATTATTCTAGATAA--C-----TAAAA-GTATTGCACGGATTACAATAACT------ATTGACAAGCTAGTAC----TCGCATTTTAGGAGTTCAAAAATCTTGGGAAATA-CTCAAACACG--TTCG-T-CACCACAATACAAGTGG---AGGCGGCGGAGTAATACTTTTTTTGTG-ATGCT--GATAAAGT-TCTTGACTTTCT--GCTGCATACAAGTTA--GGGTATTTTTCGC-ACCAGAAACCCATCCATCC-CCTTTCCGA-T-GAAACTC--A----ACTATTACT----ATTAGAAAAGCAGCACACAACAAATTATG-ATATGT-CGAAAATCTCTGA-CTGAACAACAACCCTGCG-TGGCCGTAGGAGGTGTGAGGGAGCGGGG-GTGGCGGATAGGGGGCTTAGACGCGCTTT--AGTATTTAGCAAACGTTGCTGA-CAACAATCACTGTG--GATTATTG-TT--TTGTTAAAGCTCATG----AGGAAAA-TCTTGGATACAT----CTATTGGTCCAAAGAAA-GTATTATc
gi|10 : ccaccgtgtacaatgccacatgcgaggaccgtgattggtatatcacggggtttaagaatttgaagcggagaaagtaggtcggtaagtattcaaagacgtTTGTGTTTCATTGGAATTATTCTAGATAA--CTTAATTAGAA-GTAGTGCACAGGAGACAA------TGGTTATTGACAAGCTAGCAG----TCTCATTCCGGGAGTTCAGAAATTTTGGGAA-ATGCTCAAACAC---TTCG-A-CAATA---T
gi|7 : atcaccatgtacaatgccacatgcggggaccgtgattggtgtagcgcggggtgtgtgtatttgaagcggagaaagtaggtcggtaagtattcaaagactatTATTCTCGATAAACT-----TAGAATGTAGTGCACGGAAGACAA-----ATGGTTATTGACAAAC-AGCACGTACTCGCATTCCGGGAGTTCAGAAATCTTGG-AA-T-GCTCAAACATACACTCG-AACAAT----TACAAGTAGGGTAGA-AGCG-AGTG-TA-ATTTTCGGTGTAA-ATAAGATAAGAA--CCTGA-TTTCCTGGCTGCATA-AAGTTTCAAGGTTTTT--TCTTACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC--A----A----TATTC-TTATGAAGAAACCAGCAAC--A-AAATCATGAATATGTCCGAGTATTT--GACCTGAA----AACCCTGTGTTGGC-GTA-GGGG-GT---TGAAAATCTTGTGGCCTA-GGGGGAGTGAGACGCGCTTT--AGT-TTCA
gi|14 : gtggattggtgtaaagcgtgtgcgtgtgtgtgtgtgtgtgtgtaaatttgaggcggagcaagtaggtcggtagtattcaaagaaccT--GATAAGAAATCATGA-TTTCT--GTTGCATA-AAGTTC--AAGT-TTT--CT--ACTTGCAA------------TCTTT--G
gi|2 : aGATGAAGAAACCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AGCA-TGTG-TGGC-TTAGGGGG-GT-----AAAATCTTG-GGC-TA-GGGGGAGTGAGACGCGCTTTTAAGT-TTGAGGAAA-GTTGGTGACCAAAAATCAC--TGTGGA-TATTG-TTTTGTATAAAAGTA------TAAGGAAAAGTCTTGG----A------------------GAAAGATATTATATA------ATGCGCAATTAAAATGACCAATGACGATTAAGGG-AT-----------------ATT-TACAT-G--TAC-----TGA-AAGACAA--TCAC---ACCCTCCCCCCTC---AACAAAATTGAGGTTAGGTAGTAAATACATCCACCCCCCCCCCCCCTTTTCCAGGATTTAAAATCGAAGCTCATGGGGGAAATTAAGGCTGGATAGTTACTGATTATATTATTATAACTGCTTGCTACCCTCTC----CCCATCCCA-CAATTTAGGATG--ATGAAATTT-GGACAAGTCACAAAAGT-AAGTCGTA-ATCTTCAGTA-CTGGTCCCCCTTTC-AGTC-AAAAAA---CC------C-CCTGATGTTACGTGCTATA-AGGCCAG-CATT-----------A-GACTAATGTGGACAAAGTGAATGCATTAT-----GTAAAAT--ACATGGATTTTTTTCAGGGGATTT--CTTGTGATGACTTC-AAACCCTATGGAATATACCTTGACCATGACGGAGAAAACAATACGGCTGGAGCACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCACGGCATCAACATCTTATGGAGTTTCATTTGTAAGCTGTCTAATTCGGTTGACAAGAATAACTTTGAATCTTGAAAGGTCATATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAATGCCAGAATGAAAATAATCAATGGCACCGTCTCGGTGTGCACTTCCTGATCGGCAGTGGCACA----A---GA---AA--CCTCGCAACCAAATGTTTTTATTACCGGTATATTCCTTAAAAGTTGTGTCGTCTGTCTTTTCGAG---TTAATATAAATGTAATTGATTACAAATttcaaattgaa
gi|13 : GAA----ATCCCAGTG-TGGC-GTCGGGGG-GGGGGTGAAACTCTTGTGACGTA-GGGGGACTGAGACGCGCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|6 : ttataATGAGGAAAA-TCTTGG----ATACATCTATTGGTCCAAAGAAAG-TATTATATAG----AA
gi|3 : aagctcAGAAAGGTATTATATAG----GATATGCAAGTAAATTTACCATTGGTGATTGAGCG-A-TATTCAATTGCTTAATAATTATTTAT-TTTTACATGTACCGAAAGACGAGAGTATTCCA--------CCTCCTCAACAAAATTGAAGTTAGGCAGAGAATACGCCCAACCACCCACCCCC-TTCCCGGGATTTCAAATCGAAGTTCA-GGGGGAAACTGAGGCTGGaaactctccccaccccaacaatttagatagcttgaaattttggacaatacaaagtcaagtcgtacatcttcaaggtctggtccccctttccacttgaaaaaaaaccactgtgtacgtgccagcgtcttagaccttgggacaaagtgaatgcattatgtaaaatttacatggatttttttttcagggaatttcttgtgatgacttcgagaaccactggaatatgccctgaacatgacggagaactaaactgggattccaaaaccttttctacgatggaaaatgaaatagccccaaggcataaaaattttatggagtttcatttgtaatctgtctaattcggctgacaagaatagctttgaatctcgaaatgttttatttatttttggtagagatcatgctttcgattgcaaacgtcagagtgaaaataataaataac
gi|12 : TGATGCTGGATAGT------------------AACTGCTTGCCACCC-CTAGCACCCCACGCCA-CATTTTAAAATC--TTGGAATTT-GAAAAAGTGACAAAAGT-AACTCGTA-GTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggtccccccctttcacttgaaaaaaaaagccccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggattctaaaaacccttttctacgatggaaaatgaaatagtcccaaggcatcaaaattttatggagtttcatttgtaatatgtctaattcggttgacaagaattgctttgaatcccgaaaggttttatttatttttggtagagatcatgctttcgaatacaaacgagtgagtagaaagaatcgatggcactatctcggggagcacttcctgtttggcagtgcctcaagagagacgagtcaaatactcgcaaccaaa
gi|6 : CTCTC----CCCACCCCAACAATTTAG-ATAGCTTGAAATTTTGGACA-AT-ACAAA-GTCAAGTCGTACATCTTCAAGGTCTGGTCCCCCTTTCCACTTGAAAAAAAA-CCACTGTGTACGTGCCAG--CGTCTTAGA-----------CCTTG-------------------GGACAAAGTGAATGCATTAT-----GTAAAATTTACATGGATTTTTTTTTCAGGGAATTTCTTGTGATGACTTCGAGAACCACTGGAATATGCCCTGAACATGACGGAGAA------------------CTAAACTGGGATTCCAAAA--CCTTTTCTACGATGGAAAATGAAATAGCCCCAAGGCATAAAAATTTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGCTGACAAGAATAGCTTTGAATCTCGAAATGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGATTGCAAACGTCAGAGTGAAAATAAT
gi|2 : aagctcatgaggaaaatcttggatacatctattggtccaaagaaagtattatatagaaaaa-AAAAAAAT-CC------A-TGTA--------TTTTACATAATGCATTCACTTTGTCCACATTA-GTCTA--ATG--C----TG---GCCTTATAGCACGTAACAT---CAGGGGGTTT---------------TTTGaaataac
gi|6 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagt-AAAAAAAATCC------A-TGTAA------ATTTTACATAATGCATTCACTTTGTCC-CA--AGGTCTA--caggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|11 : aagctcatgaggaaaatcttggatacatctattggtccaaagaaagtattatatagaaaaactctccccaccccaacaatttagatagcttgaaattttggacaatacaaagtcaagtcgtacatcttcaaggtctggtccccctttccacttgaaaaaaaaccactgtgtacgtgccagcgtctCGGAGAAAACAATACGGCTGGGGTACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAAtcagggaatttcttgtgatgacttcgagaaccactggaatatgccctgaacatgacggagaactaaactgggattccaaaaccttttctacgatggaaaatgaaatagccccaaggcataaaaattttatggagtttcatttgtaatctgtctaattcggctgacaagaatagctttgaatctcgaaatgttttatttatttttggtagagatcatgctttcgattgcaaacgtcagagtgaaaataataaataac
gi|3 : CGGGGATTCTAAAAACCCTTTTCTACGATGGAAAATGAAATAGTCCCAAGGCATCAAAATTTTATGGAGTTTCATTTGTAATATGTCTAATTCGGTTGACAAGAATTGCTTTGAATCCCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGAATACAAACGAGTGAGTAGAAAGAATCGATGGCACTATCTCGGGGAGCACTTCCTGTTTGGCAGTGCCTCAAGAGAGACGAGTCAAATACTCGCAACCAAA
gi|2 : agaaaggtattatataggatatgcaagtaaatttaccattggtgattgagcgatattcaattgcttaataattatttatttttacatgtaccgaaagacgagagtattccacctcctcaacaaaattgaagttaggcagagaatacgcccaaccacccacccccttcccgggatttcaaatcgaagttcagggggaaactgaggctggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggtccccccctttcacttgaaaaaaaaagccccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTAAACAATTACTGACT
gi|2 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataACATGTAATGAACGGAAGAAAAAATTAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCATAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGTTCGGTTTTGCAGTTG----AGTGATTTTTTAAATGTTTGAAAACACCATGACATattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|16 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttTTTGCAGTTGAG------A-------AATGTTTGAAAACACCATGACAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TCACCGCGTACAATGCCACATGCGGGAACCGCGACTGGT
Unaligned ( gi|17 ): TACCACCGTGTACAATGCCACATGCGGGGAC
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 11111 22222 1111 111 11111 1 11 11 111111 2222 1 1 1 11 11 1111 11 111 11 1 44444444444444 22 1 1 22 66666666 44444444444 1111 1 7777777777777777777777777 1 3333333 222 1 11 11 1 1 666666666666666666666 1111 2 1 1 2222 1 22222222222222222222222222222222222222 11 11 888888888888888 1 11 33333333 44444444444 333 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222 5555555555555555 11111 11
lowQualScore : 5 77 44444 5 88888 2222 1 0 1 555 44444 5 1 2 6 6 3 6 55 1 1 5 77 5 77 6 77 33 999999 6 99 1111 0 2 0 0 8 11 8 8 8 11 8 4444 6 6 6 00 99 111 1 11 8 0 44444444444444 77 0 0 00 44444444 2 00000000000 4 7777 99 3 0 8888888888888888888888888 3 3 7 5555555 7 000 2 33 6 7 3 0 11 22 1 1 1 7 0 0 1 5 0 6 0 3 444444444444444444444 2 3 2 7777 8 8 1 8 2 4 1 8 1 8 0 99 1 9999 44 1 0 77777777777777777777777777777777777777 4 88 7 88 111111111111111 2 6 1 22 0 0 1 3 444 11 1 1 55 44 1 0 1 1 1 1 1 8888 88888888 1 44444444444 2 3 4 555 3 4 66 5 2 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 4444 9999999999999999 55 99999 6 11
lowQualScore : . .. ..... . ..... .... . . . ... ..... . . . . . . . .. . . . .. . .. . .. .. ...... . .. .... . . . . . .. . . . .. . .... . . . .. .. ... . .. . . .............. .. . . .. ........ . ........... . .... .. . . ......................... . . . ....... . ... . .. . . . . .. .. . . . . . . . . . . . . ..................... . . . .... . . . . . . . . . . . .. . .... .. . . ...................................... . .. . .. ............... . . . .. . . . . ... .. . . .. .. . . . . . . . .... ........ . ........... . . . ... . . .. . . .................................................................................. . .... ................ .. ..... . ..
lowQualScore : 7 99 33333 7 44444 1111 0 7 4 777 33333 7 7 5 7 7 3 7 77 7 7 7 99 7 99 6 99 66 222222 7 22 2222 0 0 0 0 0 00 0 0 0 00 0 2222 7 7 7 77 22 777 7 00 0 0 55555555555555 55 0 0 88 22222222 5 22222222222 2 0000 55 0 0 5555555555555555555555555 2 3 3 3333333 3 000 3 77 7 3 7 7 77 77 0 0 0 3 7 7 0 5 0 5 2 2 555555555555555555555 8 6 8 0000 0 0 0 0 2 0 2 0 0 0 0 00 0 5555 00 0 0 33333333333333333333333333333333333333 7 33 3 33 777777777777777 0 7 0 00 7 7 0 2 888 00 0 0 88 22 0 7 0 0 0 0 0 3333 77777777 0 55555555555 5 0 0 000 0 0 55 5 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0000 0000000000000000 00 00000 7 00
consensus : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATT-CTNATG-AAGAAACCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAA-AATCACTGTGGAT-ATTG-TTTN-TATAAAAGTAC----GTAAGGAAAAGTCTTGGAT----CGNTTTGTTCAAAGAAAGGTAT----TATATAGAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCA-T---TGCTTAAT------TTACATT-TTAC-----CCGAAAGACGAG-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTGTCTGGT-CCCCCTTTCCANTTG--AAAAAAAACCCC-GTG-ACGT--CGT-CTACATA--GC---CA-C-TTGTCC-CAAGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTCGAGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACAAGAGAG-CGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTTC-AATGTTTGAAAACACCATGACAT
Reference ( family-350 ) : ATTCATTGTGTTTAATTGGAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTTATTGACAAGCTAGCAC----TCGCACTTNGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TACT-CTGATG-AAGAAACCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGAGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGAC--AA-AATCACTG--GAT-ATTG-TTTN-TATAAAAGCG-----GTAAGGAAAAGTCTTGGAT----CTATTGGTCCAAAGAAAGGTAT----TATATAGAATACGCAATTAAAATTACCAATGACGATTGAGGG-AT--TTCA-T---TG-TTAAT------TTACATT-TTAC-----CCGAAAGACGAGANCACTCCACCCTCCCCCCTCCTCAACAAAATTGAGGTTAGGCAGNGAATACGCCCANCCNCCCNCCCCCTTTCCCGGGATTTNAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGATT-----ATATTATTATAACTGCTTGCCACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGT-ACAAAAGTAAGTCGTA-ATCTTCAGNGTCTGGT-CCCCCTTTCCANTC---AAAAAAAACCNC-GTG-ACG---CGTTTTACATAATGCATTCA-CTTTGTCC-CAAGTCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CGGGG----TCTTGTGATGACTTCGAGANCCNNTGGAATATGCCCTGANCATGACGGAGAAAACAATACGGCTGGGGCACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATANTCCCAAGGCATCAANATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGATTGCAAACGNCAGAGTGAAAATAATCGATGGCACCGTCTCGGNGNGCACTTCCTGNTCGGCAGTGNCNCAAGAGAGACGAGTCAAATNCTCGCAACCAAATGTTTTTATTACCGGTATATTCCTTAAAAGTTGTGTCGTCTGTCTTTTCGAG---TTAATATAAATGTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTACTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATTAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCATAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGTTCGGTTTTGCAGTTGAG--AGTGATTTTTTAAATGTTTGAAAACACCATGACAT
gi|1 : ACTCATTGTGTAAAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATACTGTAGTCATTGACACGCTAGCAC----TGGCACTTAGGGACTTAAGAAATCTTGGGAATAGCTCAAACAC---TTCG-----A-CATTATACAAGTAGGGTAGGCGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CA--ACCAGAAAC------ATTC-TCTTT--GAATAGAAAATC----AA-TACT-TTGATG-AAGAAACCAGCACA--A-AAATTATG-ATATGT-CGAAAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATATTG--TGGCG--TAGGGGGGCTGAGACGTGCTTT--AGT-TTTAGCAAA-GTTGG-TGACCAAA-AATCACTG--GAT-ATTG-TTGG-TATAAAAGTACATGTATAAGGAAAAGTCTTGGAT----CGGTTTGTTCAAAGAAAGGTAT----TATATATAATGCACAATTAAAATGACCAATGACGATTAAGGG-ATTATTCA-TTTGTA-TCAAT------TTACATTATTAC-----CCG-AAGACGAACTCACCCCACCCGCCCCCCTCCTCAACATAA--------AGGTAGTAACTATA-CCATCCACCCACCCCCTTTTCCAGGATTTAAAATAGAAGCCCA-GAGGGAAA-TTGAGACTGGATA-G------------------------TAACTGCTTGCTACCCTCT----ACCCACCCCA-CAATTTAGG-ATGTTGAAGTTT-GGACACGTGACAAATGTAAGTCGTA-ATCATCAGTG-CTGAT-CCCCCTTT-CAGTT---AAAAAAAACCTC-GTA-GCAT--CGTTTTACATATTCCATTCA-CTTTGTCCACAAGTCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGGTTT---------------TCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGGACAGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTTTAATTCGGTTGACAAGAATAACTTTGAATCTCGAA----------------------AGATCATGCTTTCGGTTGAAAACGCCAGAGTGAACATAATCACTGGCACCGTATCGGTGTGCGCTTCCTGATCGGCGATGGCACA----AGTCGA---AAATCCTCGCAACCAAATG-----------GTTATATTCCTTAAAGGTCGTGTCGTCTGTCTTGTCGTGCCTTTCATAAAAAATTAA-TGATTACAAAT
gi|1 : ATTTAAACAATTAATGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATAAACATCTAT----TCAAAGACTAGAGTTATTTATTCATTCACAGGG--------A-------TTTCTTCTCTTTCATTTGCTATATTTTGCAGTTGGGTAAGTGATTTTTCCAATGTTTGAAAACACCATGACATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttaaacaattaatgactttctgtattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatgtaatgaacggaagaaaaaataaacatctattcaaagactagagttatttattcattcacagggatttcttctctttcatttgctatattttgcagttgggtaagtgatttttccaatgtttgaaaacaccatgacattt
gi|10 : actcattgtgtaaaattggaattattctagatgactaaaagtattgcacggaagacaatactgtagtcattgacacgctagcactggcacttagggacttaagaaatcttgggaatagctcaaacacttcgacattatacaagtagggtaggcggcgagtatatttttcggtgtatctgataaaaaatcttgatttctgctgcataaagttcaggtgtttcaaccagaaacattctctttgaatagaaaatcaatactttgatgaagaaaccagcacaaaaattatgatatgtcgaaaatttgactgaaaaccctgtgtggcgtaggggggtgggtgaaaatattgtggcgtaggggggctgagacgtgctttagttttagcaaagttggtgaccaaaaatcactggatattgttggtataaaagtacatgtataaggaaaagtcttggatcggtttgttcaaagaaaggtattatatataatgcacaattaaaatgaccaatgacgattaagggattattcatttgtatcaatttacattattacccgaagacgaactcaccccacccgcccccctcctcaacataaaggtagtaactataccatccacccacccccttttccaggatttaaaatagaagcccagagggaaattgagactggatagtaactgcttgctaccctctacccaccccacaatttaggatgttgaagtttggacacgtgacaaatgtaagtcgtaatcatcagtgctgatccccctttcagttaaaaaaaacctcgtagcatcgttttacatattccattcactttgtccacaagtctagtggacaaagtgaatgcattatgtaaaatacatgggttttcttgtgatgacttcagaaccaatggaatataccttgaacatgacggagaaaacaatacggctggagtactggacagggattctaaaaccttttctacgatggaaaatgaaatattcccaaggcatcaacatcttatggagtttcatttgtaatctgtttaattcggttgacaagaataactttgaatctcgaaagatcatgctttcggttgaaaacgccagagtgaacataatcactggcaccgtatcggtgtgcgcttcctgatcggcgatggcacaagtcgaaaatcctcgcaaccaaatggttatattccttaaaggtcgtgtcgtctgtcttgtcgtgcctttcataaaaaattaatgattacaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTGTTTCATTGGAAT-TATTCTAGATAA--CTTAATTAGAA-GTAGTGCACAGGAGACAAT-----GGTTATTGACAAGCTAGCAG----TCTCATTCCGGGAGTTCAGAAATTTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATtt
gi|11 : atcaccatgtacaatgccacatgcggggaccgtgattggtgtagcgcggggtgtgtgtatttgaagcggagaaagtaggtcggtaagtattcaaagactatCGGAGAAAACAATACGGCTGGGGTACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAA
gi|12 : TAACTGCTTGCCACCC-CTAGCACCCCACGCCA-CATTTTAAA-ATCTTGGAATTT-GAAAAAGTGACAAAAGTAACTCGTA-GTC
gi|13 : tgatgctggatagGAA----ATCCCAGTG-TGGC-GTCGGGGG-GGGGGTGAAACTCTTG--TGACG--TAGGGGGACTGAGACGCGCT
gi|14 : ttataT--GATAAGAAATCATGA-TTTCT--GTTGCATA-AAGTTC--AAGT-TTT--CT--AC
gi|16 : aTTTGCAGTTGAG--A-----------AATGTTTGAAAACACCATGACATttgcaatctttgttcaaattgaa
gi|2 : GATG-AAGAAACCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AGCA-TGTG-TGGC-TTAGGGGG-GT-----AAAATCTTG---GGC---TAGGGGGAGTGAGACGCGCTTTTAAGT-TTGAGGAAA-GTT-GGTGACCAAA-AATCACTGTGGAT-ATTG-TTTTGTATAAAAGTA------TAAGGAAAAGTCTTGGA------------------GAAAGATAT----TATATA--ATGCGCAATTAAAATGACCAATGACGATTAAGGG-AT-----------------AT------TTACATG-T-AC-----T-GAAAGACAA--TCAC---ACCCTCCCCCCTC---AACAAAATTGAGGTTAGGTAGTAAATACATCCACCCCCCCCCCCCCTTTTCCAGGATTTAAAATCGAAGCTCATGGGGGAAA-TTAAGGCTGGATA-GT-TACTGATT-----ATATTATTATAACTGCTTGCTACCCTCT----CCCCATCCCA-CAATTTAGG-ATGATGAAATTT-GGACAAGTCACAAAAGTAAGTCGTA-ATCTTCAGTA-CTGGT-CCCCCTTTC-AGTC---AAAAAA--CCCC-CTG-ATGTTACGTGCTA--TAAGGC---CAGCATT-------AGACTAATGTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTCAA-ACCCTATGGAATATACCTTGACCATGACGGAGAAAACAATACGGCTGGAGCACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCACGGCATCAACATCTTATGGAGTTTCATTTGTAAGCTGTCTAATTCGGTTGACAAGAATAACTTTGAATCTTGAAAGGTCATATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAATGCCAGAATGAAAATAATCAATGGCACCGTCTCGGTGTGCACTTCCTGATCGGCAGTGGCACAAGAAA------------CCTCGCAACCAAATGTTTTTATTACCGGTATATTCCTTAAAAGTTGTGTCGTCTGTCTTTTCGAG---TTAATATAAATGTAATTGATTACAAAT
gi|2 : ATTTAAACAATTACTGACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|2 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataACATGTAATGAACGGAAGAAAAAATTAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCATAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGTTCGGTTTTGCAGTT--G--AGTGATTTTTTAAATGTTTGAAAACACCATGACATattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|3 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttAGAAAGGTAT----TATATAGGATATGCAAGTAAATTTACCATTGGTGATTGAGCG-ATA-TTCAAT---TGCTTAATAATTATTTAT-TT-TTACATGTACCGAAAGACGAGAGTATTCCACC--------TCCTCAACAAAATTGAAGTTAGGCAGAGAATACGCCCAACCACCCACCCCC-TTCCCGGGATTTCAAATCGAAGTTCA-GGGGGAAA-CTGAGGCTGG--N-NN-NNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNN-NNNNNNNN-NNNNNNNNNNNNNNNN-NNNNNNNNNNNTTGGTCCCCCCCTTTCACTTGAAAAAAAAAGCCCC-G
gi|3 : CGGGGATTCTAAAAACCCTTTTCTACGATGGAAAATGAAATAGTCCCAAGGCATCAAAATTTTATGGAGTTTCATTTGTAATATGTCTAATTCGGTTGACAAGAATTGCTTTGAATCCCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGAATACAAACGAGTGAGTAGAAAGAATCGATGGCACTATCTCGGGGAGCACTTCCTGTTTGGCAGTGCCTCAAGAGAGACGAGTCAAATACTCGCAACCAAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggattctaaaaacccttttctacgatggaaaatgaaatagtcccaaggcatcaaaattttatggagtttcatttgtaatatgtctaattcggttgacaagaattgctttgaatcccgaaaggttttatttatttttggtagagatcatgctttcgaatacaaacgagtgagtagaaagaatcgatggcactatctcggggagcacttcctgtttggcagtgcctcaagagagacgagtcaaatactcgcaaccaaa
gi|4 : agaaaggtattatataggatatgcaagtaaatttaccattggtgattgagcgatattcaattgcttaataattatttatttttacatgtaccgaaagacgagagtattccacctcctcaacaaaattgaagttaggcagagaatacgcccaaccacccacccccttcccgggatttcaaatcgaagttcagggggaaactgaggctggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggtccccccctttcacttgaaaaaaaaagccccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTCATTGTGCTTAATTGGAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGAAGAC--TA---TGGTTATGGACAAGCTGGCAC----TCGCACTTAGGAAGTTCAGAAATCTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATACAAGTAGGGTAGAAGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-ACG-----------TT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTCTTAAAA-TATA-CTTATGAAAAAAATCAGCACA--A-AATTCATG-AAATGT-CGAGAATTT--GA-CAAAA----AACCCTGTG-TGGC-GTAGGG-----GAGTGAAAATATTG--TGGCG--TAGGGGGACTGAAACGCGCTTT--AGT-TTTAGCAAA-G----------------TCACTG--GAT-ATTGTTTTA-TATAAAAGT------GTAATGAAAAGTCTTGGAT----CATTTTGTTCAAAGAAAGGTATTATATATATAGAATACGCAATTAAAATTACCAATGACGATTGAGGGTAT--TTTATT---TGTTTAAT------TTACA
gi|5 : ccaccgcgtacaacgccacatgcggggaccgtgattggtgtagcgcggggtttgtgaatttgaagcggagaatgtaggtcggtaagtgttcaaagATTGTGTTTAATTAAAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGATTACAATA-----ACTATTGACAAGCTAGTAC----TCGCATTTTAGGAGTTCAAAAATCTTGGGAAATACTCAAACACG--TTCGTCACCA-CAATA--CAAGTGG---AGGCGGCGGAGTAATACTTTTTTTGTG-ATGCT--GATAA-AGTTCTTGACTTTCT--GCTGCATACAAGTTA--GGGTATTTTTCGC-ACCAGAAACCCATCCATCC-CCTTTCCGA-TG-AAACTC----AACTATTACT-ATT-AGAAAAGCAGCACACAACAAATTATG-ATATGT-CGAAAATCTCTGA-CTGAACAACAACCCTGCG-TGGCCGTAGGAGGTGTGAGGGAG---CGGGGGTGGCGGATAGGGGG-CTTAGACGCGCTTT--AGTATTTAGCAAACGTT-GCTGAC--AACAATCACTGTGGATTATTG-TTT--TGTTAAAGCTC----ATGAGGAAAA-TCTTGGATACATCTATTGGTCCAAAGAAA-GTAT----TATcgtatccccccccccccccac
gi|6 : ccaccgtgtacaatgccacatgcgaggaccgtgattggtatatcacggggtttaagaatttgaagcggagaaagtaggtcggtaagtattcaaagacgtAAGCTCATGAGGAAAATCT-----TGGATACATCTATTGGTCCAAAGAAAGTATTATA-----TAGAAAAACTCT----CCCCACCCCAACAATTTAGATAGCTTGAAATTTTGGACAA-T-ACAAAGTCAAGTCGTACATCTTCAAGGTCTGGT-CCCCCTTTCCACTTG--AAAAAAAACCACTGTGTACG---TGC----CA----GC----------GTCT-TAGACCTT--G-GGACAAAGTGAATGCATTATGTAAAATTTACATGGATTTTTTTTTCAGGGAATTTCTTGTGATGACTTCGAGAACCACTGGAATATGCCCTGAACATGACGGAGAA------------------CTAAACTGGGATTCCAAAA--CCTTTTCTACGATGGAAAATGAAATAGCCCCAAGGCATAAAAATTTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGCTGACAAGAATAGCTTTGAATCTCGAAATGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGATTGCAAACGTCAGAGTGAAAATAAT
gi|7 : GTATTCAA--AGAACCTATTCTCGATAAACTT-----AGAATGTAGTGCACGGAAGACAA-A---TGGTTATTGACAAAC-AGCACGTACTCGCATTCCGGGAGTTCAGAAATCTTGG--AATGCTCAAACATACACTCG-----AACAAT-TACAAGTAGGGTAGA-AGCG-AGTG-TA-ATTTTCGGTGTAA-ATAAGATAAGAA--CCTGA-TTTCCTGGCTGCATA-AAGTTTCAAGGTTTTT--TCTTACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATT-CTTATG-AAGAAACCAGCAAC--A-AAATCATGAATATGTCCGAGTATTT--GACCTGAA----AACCCTGTGTTGGC-GTA-GGGG-GT---TGAAAATCTTG--TGGCC--TAGGGGGAGTGAGACGCGCTTT--AGT-TTCAaaataac
gi|8 : gtggattggtgtaaagcgtgtgcgtgtgtgtgtgtgtgtgtgtaaatttgaggcggagcaagtaggtcggtaATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-CAATATACAAGTAGGGTAGGCAGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-TTTTT--GAATGGAAACT
gi|9 : caccgtgtacaatgccacatgcggggaccatgattggtgtagcgcggggtgtgtgaatttgaagtggagaaagtcggttggtaagtatatattcaaagATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-ACATATACAAGT-GGGTAGGCAGCG-AGTG-TATTTTTTCGGTGTAT-CCTGGATAAGAAATCTTGA-TTTCT--GC-GCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTCTTTTTT--GAATGGAAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TCACCGCGTACAATGCCACATGCGGGAACCGCGACTGGT
Unaligned ( gi|17 ): TACCACCGTGTACAATGCCACATGCGGGGAC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 11111 22222 1111 111 11111 1 11 111111 111111 2222 1 11 11 1111 2222 111 11 1 2222 1 33 4444444 222222222 333333 1 99999999999999999999999999999999999999999999 333 111 11 1 1 666666666666666666666 1111 22 1 1 11 1 1 333333333333333333333333333333333333 11 11 22222222 1 11 55555555555 44444444444 222 1 77777777777777777777777777777777777777777777777777777777777777777777777 2222 5555555555555555 333333333333333333
lowQualScore : 5 77 44444 5 88888 2222 1 0 1 555 44444 5 1 2 6 6 3 6 55 1 1 5 77 5 888 6 666666 999999 6 99 1111 0 0 1 8 11 8 8 8 11 8 4444 6 6 6 1111 99 111 1 11 8 0 9999 8 3 3 3 0 00 4444444 2 222222222 3 0 000000 1 0 22222222222222222222222222222222222222222222 444 2 6 222 7 7 3 22 1 7 0 5 0 6 0 111111111111111111111 2 1 2 7777 8 8 1 8 2 7 1 8 88 0 99 1 5 33 0 3 888888888888888888888888888888888888 1 88 7 88 00000000 3 2 6 3 0 0 11 0 55 44 0 0 0 0 77777777777 44444444444 1 1 1 000 1 1 22 5 1 11111111111111111111111111111111111111111111111111111111111111111111111 1 4444 9999999999999999 22 888888888888888888
lowQualScore : . .. ..... . ..... .... . . . ... ..... . . . . . . . .. . . . .. . ... . ...... ...... . .. .... . . . . .. . . . .. . .... . . . .... .. ... . .. . . .... . . . . . .. ....... . ......... . . ...... . . ............................................ ... . . ... . . . .. . . . . . . . ..................... . . . .... . . . . . . . . .. . .. . . .. . . .................................... . .. . .. ........ . . . . . . .. . .. .. . . . . ........... ........... . . . ... . . .. . . ....................................................................... . .... ................ .. ..................
lowQualScore : 7 99 33333 7 44444 1111 6 7 4 777 33333 7 7 5 7 7 3 7 77 7 7 7 99 7 000 6 777777 222222 7 22 2222 0 2 0 0 00 0 0 0 00 0 2222 7 7 7 5555 22 777 7 00 0 0 5555 8 0 2 2 0 88 0000000 5 888888888 0 8 888888 0 0 88888888888888888888888888888888888888888888 222 5 5 888 3 3 7 77 0 3 7 5 0 5 2 555555555555555555555 8 0 8 0000 0 0 0 0 2 2 0 0 00 0 00 0 0 88 0 3 000000000000000000000000000000000000 0 33 3 33 77777777 7 0 7 2 8 8 00 6 88 22 2 7 7 7 33333333333 55555555555 0 0 0 555 0 0 00 5 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 0000 0000000000000000 00 000000000000000000
consensus : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGAA--TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA-A-GCCA--------GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTCGAGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACAAGAGA--CGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
Reference ( family-350 ) : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTNATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTN-TATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCA-TTGC-TTAAT------TTACATT-TTAC-----CCGAAAGACGAG--TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTGTCTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACATA-GCCA-----CTTGTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTCGAGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACAAGAGAG-CGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
gi|1 : ACTCATTGTGTAAAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATACTGTAGTCATTGACACGCTAGCAC----TGGCACTTAGGGACTTAAGAAATCTTGGGAATAGCTCAAACAC---TTCG-----A-CATTATACAAGTAGGGTAGGCGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CA--ACCAGAAAC------ATTC-TCTTT--GAATAGAAAATC----AA-TACTTTGATGAAGAAA-CCAGCACA--A-AAATTATG-ATATGT-CGAAAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATATTG--TGGCG--TAGGGGGGCTGAGACGTGCTTT--AGT-TTTAGCAAA-GTTGG-TGACCAAAAATCAC--TGGA-TATTGTTGG-TATAAAAGTACATGTATAAGGAAAAGTCTTGG----ATCGGTTTGTTCAAAGAAAGGTATTATATA----TAATGCACAATTAAAATGACCAATGACGATTAAGGG-ATTATTCATTTGTATCAAT------TTACATTATTAC-----CCG-AAGACGAAC-TCACCCCACCCGCCCCCCTCCTCAACATAA--------AGGTAGTAACTATA-CCATCCACCCACCCCCTTTTCCAGGATTTAAAATAGAAGCCCA-GAGGGAAA-TTGAGACTGGATA-G------------------------TAACTGCTTGCTACCCTCT----ACCCACCCCA-CAATTTAGG-ATGTTGAAGTTT-GGACACGTGACAAATGTAAGTCGTA-ATCATCAGTG-CTGAT-CCCCCTTT-CAGTT-AAAAAAAA--CC-TCGTA-GCAT--CGTT-TTACATATTCCATTCACTTTGTCCACA--AGTCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGGT---------------TTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGGACAGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTTTAATTCGGTTGACAAGAATAACTTTGAATCTCGAA----------------------AGATCATGCTTTCGGTTGAAAACGCCAGAGTGAACATAATCACTGGCACCGTATCGGTGTGCGCTTCCTGATCGGCGATGGCACAAG---T-CGA---AAATCCTCGCAACCAAATG-----------GTTATATTCCTTAAAGGTCGTGTCGTCTGTCTTGTCGTGCCTTTCATAAAAAATTAA-TGATTACAAAT
gi|1 : ATTTAAACAATTAATGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATAAACATCTAT----TCAAAGACTAGAGTTATTTATTCATTCACAGGG--------A-------TTTCTTCTCTTTCATTTGCTATATTTTGCAGTTGGGTAAGTGATTTTTCC-AATGTTTGAAAACACCATGACATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttaaacaattaatgactttctgtattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatgtaatgaacggaagaaaaaataaacatctattcaaagactagagttatttattcattcacagggatttcttctctttcatttgctatattttgcagttgggtaagtgatttttccaatgtttgaaaacaccatgacattt
gi|10 : actcattgtgtaaaattggaattattctagatgactaaaagtattgcacggaagacaatactgtagtcattgacacgctagcactggcacttagggacttaagaaatcttgggaatagctcaaacacttcgacattatacaagtagggtaggcggcgagtatatttttcggtgtatctgataaaaaatcttgatttctgctgcataaagttcaggtgtttcaaccagaaacattctctttgaatagaaaatcaatactttgatgaagaaaccagcacaaaaattatgatatgtcgaaaatttgactgaaaaccctgtgtggcgtaggggggtgggtgaaaatattgtggcgtaggggggctgagacgtgctttagttttagcaaagttggtgaccaaaaatcactggatattgttggtataaaagtacatgtataaggaaaagtcttggatcggtttgttcaaagaaaggtattatatataatgcacaattaaaatgaccaatgacgattaagggattattcatttgtatcaatttacattattacccgaagacgaactcaccccacccgcccccctcctcaacataaaggtagtaactataccatccacccacccccttttccaggatttaaaatagaagcccagagggaaattgagactggatagtaactgcttgctaccctctacccaccccacaatttaggatgttgaagtttggacacgtgacaaatgtaagtcgtaatcatcagtgctgatccccctttcagttaaaaaaaacctcgtagcatcgttttacatattccattcactttgtccacaagtctagtggacaaagtgaatgcattatgtaaaatacatgggttttcttgtgatgacttcagaaccaatggaatataccttgaacatgacggagaaaacaatacggctggagtactggacagggattctaaaaccttttctacgatggaaaatgaaatattcccaaggcatcaacatcttatggagtttcatttgtaatctgtttaattcggttgacaagaataactttgaatctcgaaagatcatgctttcggttgaaaacgccagagtgaacataatcactggcaccgtatcggtgtgcgcttcctgatcggcgatggcacaagtcgaaaatcctcgcaaccaaatggttatattccttaaaggtcgtgtcgtctgtcttgtcgtgcctttcataaaaaattaatgattacaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTGTTTCATTGGAAT-TATTCTAGATAA--CTTAATTAGAA-GTAGTGCACAGGAGACAAT-----GGTTATTGACAAGCTAGCAG----TCTCATTCCGGGAGTTCAGAAATTTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATtt
gi|11 : atcaccatgtacaatgccacatgcggggaccgtgattggtgtagcgcggggtgtgtgtatttgaagcggagaaagtaggtcggtaagtattcaaagactatCGGAGAAAACAATACGGCTGGGGTACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAA
gi|12 : TAACTGCTTGCCACCC-CTAGCACCCCACGCCA-CATTTTAAA-ATCTTGGAATTT-GAAAAAGTGACAAAAGTAACTCGTA-GTC
gi|13 : tgatgctggatagGAA----ATCCCAGTG-TGGC-GTCGGGGG-GGGGGTGAAACTCTTG--TGACG--TAGGGGGACTGAGACGCGCT
gi|14 : ttataT--GATAAGAAATCATGA-TTTCT--GTTGCATA-AAGTTC--AAGT-TTT--CT--AC
gi|16 : aTTTGCAGTTGAG--A------------AATGTTTGAAAACACCATGACATttgcaatctttgttcaaattgaa
gi|2 : ATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AGCA-TGTG-TGGC-TTAGGGGG-GT-----AAAATCTTG---GGC---TAGGGGGAGTGAGACGCGCTTTTAAGT-TTGAGGAAA-GTT-GGTGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTA------TAAGGAAAAGTCTTGG----A--------------GAAAGATATTATATA------ATGCGCAATTAAAATGACCAATGACGATTAAGGG-AT---------------AT------TTACATG-T-AC-----T-GAAAGACAA---TCAC---ACCC-TCCCCC--CTCAACAAAATTGAGGTTAGGTAGTAAATACATCCACCCCCCCCCCCCCTTTTCCAGGATTTAAAATCGAAGCTCATGGGGGAAA-TTAAGGCTGGATA-GT-TACTGATT-----ATATTATTATAACTGCTTGCTACCCTCT----CCCCATCCCA-CAATTTAGG-ATGATGAAATTT-GGACAAGTCACAAAAGTAAGTCGTA-ATCTTCAGTA-CTGGT-CCCCCTTTC-AGTC---AAAAAA--CC-CCCTG-ATGTTACG-TGCTATAAG-GCCA--------G----CATTAGACTAATGTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTCAA-ACCCTATGGAATATACCTTGACCATGACGGAGAAAACAATACGGCTGGAGCACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCACGGCATCAACATCTTATGGAGTTTCATTTGTAAGCTGTCTAATTCGGTTGACAAGAATAACTTTGAATCTTGAAAGGTCATATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAATGCCAGAATGAAAATAATCAATGGCACCGTCTCGGTGTGCACTTCCTGATCGGCAGTGGCACAAGAAA------------CCTCGCAACCAAATGTTTTTATTACCGGTATATTCCTTAAAAGTTGTGTCGTCTGTCTTTTCGAG---TTAATATAAATGTAATTGATTACAAAT
gi|2 : gATTTAAACAATTACTGACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|2 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataACATGTAATGAACGGAAGAAAAAATTAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCATAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGTTCGGTTTTGCAGTT--G--AGTGATTTTT-TAAATGTTTGAAAACACCATGACATattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|3 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttAGAAAGGTATTATATA----GGATATGCAAGTAAATTTACCATTGGTGATTGAGCG-ATA-TTCAATTGC-TTAATAATTATTTAT-TT-TTACATGTACCGAAAGACGAGAGT-ATTCCACC--------TCCTCAACAAAATTGAAGTTAGGCAGAGAATACGCCCAACCACCCACCCCC-TTCCCGGGATTTCAAATCGAAGTTCA-GGGGGAAA-CTGAGGCTGGNNN-NN-NNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNT---TGGTCCCCCCCTTTCACTTGAAAAAAAAAGCC-CCG
gi|3 : CGGGGATTCTAAAAACCCTTTTCTACGATGGAAAATGAAATAGTCCCAAGGCATCAAAATTTTATGGAGTTTCATTTGTAATATGTCTAATTCGGTTGACAAGAATTGCTTTGAATCCCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGAATACAAACGAGTGAGTAGAAAGAATCGATGGCACTATCTCGGGGAGCACTTCCTGTTTGGCAGTGCCTCAAGAGAGACGAGTCAAATACTCGCAACCAAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggattctaaaaacccttttctacgatggaaaatgaaatagtcccaaggcatcaaaattttatggagtttcatttgtaatatgtctaattcggttgacaagaattgctttgaatcccgaaaggttttatttatttttggtagagatcatgctttcgaatacaaacgagtgagtagaaagaatcgatggcactatctcggggagcacttcctgtttggcagtgcctcaagagagacgagtcaaatactcgcaaccaaa
gi|4 : agaaaggtattatataggatatgcaagtaaatttaccattggtgattgagcgatattcaattgcttaataattatttatttttacatgtaccgaaagacgagagtattccacctcctcaacaaaattgaagttaggcagagaatacgcccaaccacccacccccttcccgggatttcaaatcgaagttcagggggaaactgaggctggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggtccccccctttcacttgaaaaaaaaagccccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTCATTGTGCTTAATTGGAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGAAGAC--TA---TGGTTATGGACAAGCTGGCAC----TCGCACTTAGGAAGTTCAGAAATCTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATACAAGTAGGGTAGAAGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-ACGTTC-------------G--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTCTTAAAA-TATACTTATGAAAAAAATCAGCACA--A-AATTCATG-AAATGT-CGAGAATTT--GA-CAAAA----AACCCTGTG-TGGC-GTAGGGGA-GTG----AAAATATTG--TGGCG--TAGGGGGACTGAAACGCGCTTT--AGT-TTTAGCAAA-GT---------------CACTG--GA-TATTGTTTTATATAAAAGT------GTAATGAAAAGTCTTGG----ATCATTTTGTTCAAAGAAAGGTATTATATATATAGAATACGCAATTAAAATTACCAATGACGATTGAGGGTAT--TTTATTTGT-TTAAT------TTAC--------------------ACGTA--TCCCCCCCCCC-CCCC
gi|5 : ccaccgcgtacaacgccacatgcggggaccgtgattggtgtagcgcggggtttgtgaatttgaagcggagaatgtaggtcggtaagtgttcaaagATTGTGTTTAATTAAAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGATTACAATA-----ACTATTGACAAGCTAGTAC----TCGCATTTTAGGAGTTCAAAAATCTTGGGAAATACTCAAACACG--TTCGTCACCA-CAATA--CAAGTGG---AGGCGGCGGAGTAATACTTTTTTTGTG-ATGCT--GATAA-AGTTCTTGACTTTCT--GCTGCATACAAGTTA--GGGTATTTTTCGC-ACCAGAAACCCATCCATCC-CCTTTCCGA-TG-AAACTC----AACTATTACTATTAGAAAA-GCAGCACACAACAAATTATG-ATATGT-CGAAAATCTCTGA-CTGAACAACAACCCTGCG-TGGCCGTAGGAGGTGTGAGGGAG---CGGGGGTGGCGGATAGGGGG-CTTAGACGCGCTTT--AGTATTTAGCAAACGTT-GCTGA-CAACAATCACTGTGGATTATTGTTT--TGTTAAAGCTC----ATGAGGAAAA-TCTTGGATACATCTATTGGTCCAAAGAAA-GTATTATac
gi|6 : ccaccgtgtacaatgccacatgcgaggaccgtgattggtatatcacggggtttaagaatttgaagcggagaaagtaggtcggtaagtattcaaagacgtAAGCTCATGAGGAAAATCT-----TGGATACATCTATTGGTCCAAAGAAAGTATTATA-----TAGAAAAACTCT----CCCCACCCCAACAATTTAGATAGCTTGAAATTTTGGACAA-T-ACAAAGTCAAGTCGTACATCTTCAAGGTCTGGT-CCCCCTTTCCACTTGAAAAAAAA--CCACTGTGTACGT---G-C-C-----A-GC----------GTCT-TA--GACCTT--G-GGACAAAGTGAATGCATTATGTAAAATTTACATGGATTTTTTTTTCAGGGAATTTCTTGTGATGACTTCGAGAACCACTGGAATATGCCCTGAACATGACGGAGAA------------------CTAAACTGGGATTCCAAAA--CCTTTTCTACGATGGAAAATGAAATAGCCCCAAGGCATAAAAATTTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGCTGACAAGAATAGCTTTGAATCTCGAAATGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGATTGCAAACGTCAGAGTGAAAATAAT
gi|7 : GTATTCAA--AGAACCTATTCTCGATAAACTT-----AGAATGTAGTGCACGGAAGACAA-A---TGGTTATTGACAAAC-AGCACGTACTCGCATTCCGGGAGTTCAGAAATCTTGG--AATGCTCAAACATACACTCG-----AACAAT-TACAAGTAGGGTAGA-AGCG-AGTG-TA-ATTTTCGGTGTAA-ATAAGATAAGAA--CCTGA-TTTCCTGGCTGCATA-AAGTTTCAAGGTTTTT--TCTTACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCAAC--A-AAATCATGAATATGTCCGAGTATTT--GACCTGAA----AACCCTGTGTTGGC-GTA-GGGG-GT---TGAAAATCTTG--TGGCC--TAGGGGGAGTGAGACGCGCTTT--AGT-TTCAaaataac
gi|8 : gtggattggtgtaaagcgtgtgcgtgtgtgtgtgtgtgtgtgtaaatttgaggcggagcaagtaggtcggtaATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-CAATATACAAGTAGGGTAGGCAGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-TTTTT--GAATGGAAACT
gi|9 : caccgtgtacaatgccacatgcggggaccatgattggtgtagcgcggggtgtgtgaatttgaagtggagaaagtcggttggtaagtatatattcaaagATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-ACATATACAAGT-GGGTAGGCAGCG-AGTG-TATTTTTTCGGTGTAT-CCTGGATAAGAAATCTTGA-TTTCT--GC-GCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTCTTTTTT--GAATGGAAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TCACCGCGTACAATGCCACATGCGGGAACCGCGACTGGT
Unaligned ( gi|17 ): TACCACCGTGTACAATGCCACATGCGGGGAC
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 11111 22222 1111 111 11111 1 11 111111 111111 2222 1 11 11 1111 2222 111 11 1 2222 1 4444444 222222222 333333 1 33333333333333333333333 55555555555555555 11111111 111 11 1 1 666666666666666666666 1111 11 1 1 1 11 1 1 2222222222222222222222222222222222222 11 11 22222222 2 11 3333333333333 44444444444 222 1 77777777777777777777777777777777777777777777777777777777777777777777777 2222 5555555555555555 333333333333333333
lowQualScore : 5 77 44444 5 88888 2222 1 0 1 555 44444 5 1 2 6 6 3 6 55 1 1 5 77 5 888 6 666666 999999 6 99 1111 0 0 8 11 8 8 8 11 8 4444 6 6 6 1111 99 111 1 11 8 0 9999 8 3 3 3 0 3 3 9999999 2 222222222 3 0 000000 1 0 11111111111111111111111 88888888888888888 2 22222222 3 222 8 7 3 22 1 7 0 5 0 6 0 111111111111111111111 2 1 2 7777 8 8 1 8 2 7 1 8 66 0 9 1 5 33 0 3 9999999999999999999999999999999999999 1 88 7 88 00000000 3 3 3 0 0 11 0 55 44 0 0 0 0 7777777777777 44444444444 1 1 1 000 1 1 22 5 1 11111111111111111111111111111111111111111111111111111111111111111111111 1 4444 9999999999999999 22 888888888888888888
lowQualScore : . .. ..... . ..... .... . . . ... ..... . . . . . . . .. . . . .. . ... . ...... ...... . .. .... . . . .. . . . .. . .... . . . .... .. ... . .. . . .... . . . . . . . ....... . ......... . . ...... . . ....................... ................. . ........ . ... . . . .. . . . . . . . ..................... . . . .... . . . . . . . . .. . . . . .. . . ..................................... . .. . .. ........ . . . . . .. . .. .. . . . . ............. ........... . . . ... . . .. . . ....................................................................... . .... ................ .. ..................
lowQualScore : 7 99 33333 7 44444 1111 6 7 4 777 33333 7 7 5 7 7 3 7 77 7 7 7 99 7 000 6 777777 222222 7 22 2222 0 2 0 00 0 0 0 00 0 2222 7 7 7 5555 22 777 7 00 0 0 5555 8 0 2 2 0 2 2 8888888 5 888888888 0 8 888888 0 0 22222222222222222222222 55555555555555555 5 00000000 2 888 8 3 7 77 0 3 7 5 0 5 2 555555555555555555555 8 0 8 0000 0 0 0 0 2 2 0 0 55 0 0 0 0 88 0 3 7777777777777777777777777777777777777 0 33 3 33 77777777 7 3 2 8 8 00 6 88 22 2 7 7 7 3333333333333 55555555555 0 0 0 555 0 0 00 5 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 0000 0000000000000000 00 000000000000000000
consensus : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGA-A-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA------A-GCCA----GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACA--AGAGACGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
Reference ( family-350 ) : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGA-A-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA------A-GCCA----GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTCGAGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACA--AGAGACGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
gi|1 : ACTCATTGTGTAAAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATACTGTAGTCATTGACACGCTAGCAC----TGGCACTTAGGGACTTAAGAAATCTTGGGAATAGCTCAAACAC---TTCG-----A-CATTATACAAGTAGGGTAGGCGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CA--ACCAGAAAC------ATTC-TCTTT--GAATAGAAAATC----AA-TACTTTGATGAAGAAA-CCAGCACA--A-AAATTATG-ATATGT-CGAAAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATATTG--TGGCG--TAGGGGGGCTGAGACGTGCTTT--AGT-TTTAGCAAA-GTTGG-TGACCAAAAATCAC--TGGA-TATTG-TTGGTATAAAAGTACATGTATAAGGAAAAGTCTTGG----ATCGGTTTGTTCAAAGAAAGGTATTATATA----TAATGCACAATTAAAATGACCAATGACGATTAAGGG-ATTATTCATTTGTATCAAT------TTACATTATTAC-----CCG-AAGACGA-ACTCACCCCACCCGCCCCCCTCCTCAACATAA--------AGGTAGTAACTATA-CCATCCACCCACCCCCTTTTCCAGGATTTAAAATAGAAGCCCA-GAGGGAAA-TTGAGACTGGATA-G------------------------TAACTGCTTGCTACCCTCT----ACCCACCCCA-CAATTTAGG-ATGTTGAAGTTT-GGACACGTGACAAATGTAAGTCGTA-ATCATCAGTG-CTGAT-CCCCCTTT-CAGTT-AAAAAAAA--CC-TCGTA-GCAT--CGTT-TTACATATTCCA-TTCACTTTGTCCACA--AGTCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGGT---------------TTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGGACAGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTTTAATTCGGTTGACAAGAATAACTTTGAATCTCGAA----------------------AGATCATGCTTTCGGTTGAAAACGCCAGAGTGAACATAATCACTGGCACCGTATCGGTGTGCGCTTCCTGATCGGCGATGGCACA----AGTCGA---AAATCCTCGCAACCAAATG-----------GTTATATTCCTTAAAGGTCGTGTCGTCTGTCTTGTCGTGCCTTTCATAAAAAATTAA-TGATTACAAAT
gi|1 : ATTTAAACAATTAATGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATAAACATCTAT----TCAAAGACTAGAGTTATTTATTCATTCACAGGG--------A-------TTTCTTCTCTTTCATTTGCTATATTTTGCAGTTGGGTAAGTGATTTTTCC-AATGTTTGAAAACACCATGACATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttaaacaattaatgactttctgtattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatgtaatgaacggaagaaaaaataaacatctattcaaagactagagttatttattcattcacagggatttcttctctttcatttgctatattttgcagttgggtaagtgatttttccaatgtttgaaaacaccatgacattt
gi|10 : actcattgtgtaaaattggaattattctagatgactaaaagtattgcacggaagacaatactgtagtcattgacacgctagcactggcacttagggacttaagaaatcttgggaatagctcaaacacttcgacattatacaagtagggtaggcggcgagtatatttttcggtgtatctgataaaaaatcttgatttctgctgcataaagttcaggtgtttcaaccagaaacattctctttgaatagaaaatcaatactttgatgaagaaaccagcacaaaaattatgatatgtcgaaaatttgactgaaaaccctgtgtggcgtaggggggtgggtgaaaatattgtggcgtaggggggctgagacgtgctttagttttagcaaagttggtgaccaaaaatcactggatattgttggtataaaagtacatgtataaggaaaagtcttggatcggtttgttcaaagaaaggtattatatataatgcacaattaaaatgaccaatgacgattaagggattattcatttgtatcaatttacattattacccgaagacgaactcaccccacccgcccccctcctcaacataaaggtagtaactataccatccacccacccccttttccaggatttaaaatagaagcccagagggaaattgagactggatagtaactgcttgctaccctctacccaccccacaatttaggatgttgaagtttggacacgtgacaaatgtaagtcgtaatcatcagtgctgatccccctttcagttaaaaaaaacctcgtagcatcgttttacatattccattcactttgtccacaagtctagtggacaaagtgaatgcattatgtaaaatacatgggttttcttgtgatgacttcagaaccaatggaatataccttgaacatgacggagaaaacaatacggctggagtactggacagggattctaaaaccttttctacgatggaaaatgaaatattcccaaggcatcaacatcttatggagtttcatttgtaatctgtttaattcggttgacaagaataactttgaatctcgaaagatcatgctttcggttgaaaacgccagagtgaacataatcactggcaccgtatcggtgtgcgcttcctgatcggcgatggcacaagtcgaaaatcctcgcaaccaaatggttatattccttaaaggtcgtgtcgtctgtcttgtcgtgcctttcataaaaaattaatgattacaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTGTTTCATTGGAAT-TATTCTAGATAA--CTTAATTAGAA-GTAGTGCACAGGAGACAAT-----GGTTATTGACAAGCTAGCAG----TCTCATTCCGGGAGTTCAGAAATTTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATtt
gi|11 : atcaccatgtacaatgccacatgcggggaccgtgattggtgtagcgcggggtgtgtgtatttgaagcggagaaagtaggtcggtaagtattcaaagactatCGGAGAAAACAATACGGCTGGGGTACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAA
gi|12 : TAACTGCTTGCCACCC-CTAGCACCCCACGCCA-CATTTTAAA-ATCTTGGAATTT-GAAAAAGTGACAAAAGTAACTCGTA-GTC
gi|13 : tgatgctggatagGAA----ATCCCAGTG-TGGC-GTCGGGGG-GGGGGTGAAACTCTTG--TGACG--TAGGGGGACTGAGACGCGCT
gi|14 : ttataT--GATAAGAAATCATGA-TTTCT--GTTGCATA-AAGTTC--AAGT-TTT--CT--AC
gi|16 : aTTTGCAGTTGAG--A------------AATGTTTGAAAACACCATGACATttgcaatctttgttcaaattgaa
gi|2 : ATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AGCA-TGTG-TGGC-TTAGGGGG-GT-----AAAATCTTG---GGC---TAGGGGGAGTGAGACGCGCTTTTAAGT-TTGAGGAAA-GTT-GGTGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTA------TAAGGAAAAGTCTTGG----A--------------GAAAGATATTATATA------ATGCGCAATTAAAATGACCAATGACGATTAAGGG-AT---------------AT------TTACA-T-GTA------CTGAAAGAC-A-A-TCA---CACCC-TCCCC--CCTCAACAAAATTGAGGTTAGGTAGTAAATACATCCACCCCCCCCCCCCCTTTTCCAGGATTTAAAATCGAAGCTCATGGGGGAAA-TTAAGGCTGGATA-GT-TACTGATT-----ATATTATTATAACTGCTTGCTACCCTCT----CCCCATCCCA-CAATTTAGG-ATGATGAAATTT-GGACAAGTCACAAAAGTAAGTCGTA-ATCTTCAGTA-CTGGT-CCCCCTTT-CAGTC---AAAAAA--CC-CCCTG-ATGTTACG-TGCTATA------AGGCCA----G----CATTAGACTAATGTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AAACCCTATGGAATATACCTTGACCATGACGGAGAAAACAATACGGCTGGAGCACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCACGGCATCAACATCTTATGGAGTTTCATTTGTAAGCTGTCTAATTCGGTTGACAAGAATAACTTTGAATCTTGAAAGGTCATATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAATGCCAGAATGAAAATAATCAATGGCACCGTCTCGGTGTGCACTTCCTGATCGGCAGTGGCACA--AGAAA----------CCTCGCAACCAAATGTTTTTATTACCGGTATATTCCTTAAAAGTTGTGTCGTCTGTCTTTTCGAG---TTAATATAAATGTAATTGATTACAAAT
gi|2 : gATTTAAACAATTACTGACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|2 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataACATGTAATGAACGGAAGAAAAAATTAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCATAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGTTCGGTTTTGCAGTT--G--AGTGATTTTT-TAAATGTTTGAAAACACCATGACATattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|3 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttAGAAAGGTATTATATA----GGATATGCAAGTAAATTTACCATTGGTGATTGAGCG-ATA-TTCAATTGC-TTAATAATTATTTAT-TT-TTACATGTACCGAAAGACGAGA-GTATTCCACC--------TCCTCAACAAAATTGAAGTTAGGCAGAGAATACGCCCAACCACCCACCCCC-TTCCCGGGATTTCAAATCGAAGTTCA-GGGGGAAA-CTGAGGCTGGNNN-NN-NNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNT---TGGTCCCCCCCTTTCACTTGAAAAAAAAAGCC-CCG
gi|3 : CGGGGATTCTAAAAACCCTTTTCTACGATGGAAAATGAAATAGTCCCAAGGCATCAAAATTTTATGGAGTTTCATTTGTAATATGTCTAATTCGGTTGACAAGAATTGCTTTGAATCCCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGAATACAAACGAGTGAGTAGAAAGAATCGATGGCACTATCTCGGGGAGCACTTCCTGTTTGGCAGTGCCTCAAGAGAGACGAGTCAAATACTCGCAACCAAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggattctaaaaacccttttctacgatggaaaatgaaatagtcccaaggcatcaaaattttatggagtttcatttgtaatatgtctaattcggttgacaagaattgctttgaatcccgaaaggttttatttatttttggtagagatcatgctttcgaatacaaacgagtgagtagaaagaatcgatggcactatctcggggagcacttcctgtttggcagtgcctcaagagagacgagtcaaatactcgcaaccaaa
gi|4 : agaaaggtattatataggatatgcaagtaaatttaccattggtgattgagcgatattcaattgcttaataattatttatttttacatgtaccgaaagacgagagtattccacctcctcaacaaaattgaagttaggcagagaatacgcccaaccacccacccccttcccgggatttcaaatcgaagttcagggggaaactgaggctggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggtccccccctttcacttgaaaaaaaaagccccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTCATTGTGCTTAATTGGAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGAAGAC--TA---TGGTTATGGACAAGCTGGCAC----TCGCACTTAGGAAGTTCAGAAATCTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATACAAGTAGGGTAGAAGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-ACGTTC-------------G--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTCTTAAAA-TATACTTATGAAAAAAATCAGCACA--A-AATTCATG-AAATGT-CGAGAATTT--GA-CAAAA----AACCCTGTG-TGGC-GTAGGGGA-GTG----AAAATATTG--TGGCG--TAGGGGGACTGAAACGCGCTTT--AGT-TTTAGCAAA-GT---------------CACTG--GA-TATTGTTTTATATAAAAGT------GTAATGAAAAGTCTTGG----ATCATTTTGTTCAAAGAAAGGTATTATATATATAGAATACGCAATTAAAATTACCAATGACGATTGAGGGTAT--TTTATTTGT-TTAAT------TTACA--------------------CGT-A-TC-CCCC-CCC-CCCCCC
gi|5 : ccaccgcgtacaacgccacatgcggggaccgtgattggtgtagcgcggggtttgtgaatttgaagcggagaatgtaggtcggtaagtgttcaaagATTGTGTTTAATTAAAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGATTACAATA-----ACTATTGACAAGCTAGTAC----TCGCATTTTAGGAGTTCAAAAATCTTGGGAAATACTCAAACACG--TTCGTCACCA-CAATA--CAAGTGG---AGGCGGCGGAGTAATACTTTTTTTGTG-ATGCT--GATAA-AGTTCTTGACTTTCT--GCTGCATACAAGTTA--GGGTATTTTTCGC-ACCAGAAACCCATCCATCC-CCTTTCCGA-TG-AAACTC----AACTATTACTATTAGAAAA-GCAGCACACAACAAATTATG-ATATGT-CGAAAATCTCTGA-CTGAACAACAACCCTGCG-TGGCCGTAGGAGGTGTGAGGGAG---CGGGGGTGGCGGATAGGGGG-CTTAGACGCGCTTT--AGTATTTAGCAAACGTT-GCTGA-CAACAATCACTGTGGATTATTGTTTTGT-TAAAGCT-C----ATGAGGAAAA-TCTTGGATACATCTATTGGTCCAAAGAAA-GTATTATac
gi|6 : ccaccgtgtacaatgccacatgcgaggaccgtgattggtatatcacggggtttaagaatttgaagcggagaaagtaggtcggtaagtattcaaagacgtAAGCTCATGAGGAAAATCT-----TGGATACATCTATTGGTCCAAAGAAAGTATTATA-----TAGAAAAACTCT----CCCCACCCCAACAATTTAGATAGCTTGAAATTTTGGACAA-T-ACAAAGTCAAGTCGTACATCTTCAAGGTCTGGT-CCCCCTTTCCACTTGAAAAAAAA--CCACTGTGTACGT---G-C-C----------A-GC------GTCT-TA--GACCTT--G-GGACAAAGTGAATGCATTATGTAAAATTTACATGGATTTTTTTTTCAGGGAATTTCTTGTGATGACTTCGAGAACCACTGGAATATGCCCTGAACATGACGGAGAA------------------CTAAACTGGGATTCCAAAA--CCTTTTCTACGATGGAAAATGAAATAGCCCCAAGGCATAAAAATTTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGCTGACAAGAATAGCTTTGAATCTCGAAATGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGATTGCAAACGTCAGAGTGAAAATAAT
gi|7 : GTATTCAA--AGAACCTATTCTCGATAAACTT-----AGAATGTAGTGCACGGAAGACAA-A---TGGTTATTGACAAAC-AGCACGTACTCGCATTCCGGGAGTTCAGAAATCTTGG--AATGCTCAAACATACACTCG-----AACAAT-TACAAGTAGGGTAGA-AGCG-AGTG-TA-ATTTTCGGTGTAA-ATAAGATAAGAA--CCTGA-TTTCCTGGCTGCATA-AAGTTTCAAGGTTTTT--TCTTACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCAAC--A-AAATCATGAATATGTCCGAGTATTT--GACCTGAA----AACCCTGTGTTGGC-GTA-GGGG-GT---TGAAAATCTTG--TGGCC--TAGGGGGAGTGAGACGCGCTTT--AGT-TTCAaaataac
gi|8 : gtggattggtgtaaagcgtgtgcgtgtgtgtgtgtgtgtgtgtaaatttgaggcggagcaagtaggtcggtaATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-CAATATACAAGTAGGGTAGGCAGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-TTTTT--GAATGGAAACT
gi|9 : caccgtgtacaatgccacatgcggggaccatgattggtgtagcgcggggtgtgtgaatttgaagtggagaaagtcggttggtaagtatatattcaaagATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-ACATATACAAGT-GGGTAGGCAGCG-AGTG-TATTTTTTCGGTGTAT-CCTGGATAAGAAATCTTGA-TTTCT--GC-GCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTCTTTTTT--GAATGGAAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TCACCGCGTACAATGCCACATGCGGGAACCGCGACTGGT
Unaligned ( gi|17 ): TACCACCGTGTACAATGCCACATGCGGGGAC
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 11111 22222 1111 111 11111 1 11 111111 111111 2222 1 11 11 1111 2222 111 11 1 2222 1 4444444 222222222 333333 1 33333333333333333333333 55555555555555555 11111111 111 11 1 1 666666666666666666666 1111 11 1 1 1 11 1 1 2222222222222222222222222222222222222 11 11 22222222 1 11 3333333333333 44444444444 222 1 77777777777777777777777777777777777777777777777777777777777777777777777 2222 5555555555555555 333333333333333333
lowQualScore : 5 77 44444 5 88888 2222 1 0 1 555 44444 5 1 2 6 6 3 6 55 1 1 5 77 5 888 6 666666 999999 6 99 1111 0 0 8 11 8 8 8 11 8 4444 6 6 6 1111 99 111 1 11 8 0 9999 8 3 3 3 0 3 3 9999999 2 222222222 3 0 000000 1 0 11111111111111111111111 88888888888888888 2 22222222 3 222 8 7 3 22 1 7 0 5 0 6 0 111111111111111111111 2 1 2 7777 8 8 1 8 2 7 1 8 66 0 9 1 5 33 0 3 9999999999999999999999999999999999999 1 88 7 88 00000000 3 3 3 0 0 11 0 55 44 0 0 0 0 7777777777777 44444444444 1 1 1 000 1 1 22 5 1 11111111111111111111111111111111111111111111111111111111111111111111111 1 4444 9999999999999999 22 888888888888888888
lowQualScore : . .. ..... . ..... .... . . . ... ..... . . . . . . . .. . . . .. . ... . ...... ...... . .. .... . . . .. . . . .. . .... . . . .... .. ... . .. . . .... . . . . . . . ....... . ......... . . ...... . . ....................... ................. . ........ . ... . . . .. . . . . . . . ..................... . . . .... . . . . . . . . .. . . . . .. . . ..................................... . .. . .. ........ . . . . . .. . .. .. . . . . ............. ........... . . . ... . . .. . . ....................................................................... . .... ................ .. ..................
lowQualScore : 7 99 33333 7 44444 1111 6 7 4 777 33333 7 7 5 7 7 3 7 77 7 7 7 99 7 000 6 777777 222222 7 22 2222 0 2 0 00 0 0 0 00 0 2222 7 7 7 5555 22 777 7 00 0 0 5555 8 0 2 2 0 2 2 8888888 5 888888888 0 8 888888 0 0 22222222222222222222222 55555555555555555 5 00000000 2 888 8 3 7 77 0 3 7 5 0 5 2 555555555555555555555 8 0 8 0000 0 0 0 0 2 2 0 0 55 0 0 0 0 88 0 3 7777777777777777777777777777777777777 0 33 3 33 77777777 7 3 2 8 8 00 6 88 22 2 7 7 7 3333333333333 55555555555 0 0 0 555 0 0 00 5 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 0000 0000000000000000 00 000000000000000000
consensus : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGA-A-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA------A-GCCA----GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACA--AGAGACGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
Reference ( family-350 ) : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGA-A-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA------A-GCCA----GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACA--AGAGACGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
gi|1 : ACTCATTGTGTAAAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATACTGTAGTCATTGACACGCTAGCAC----TGGCACTTAGGGACTTAAGAAATCTTGGGAATAGCTCAAACAC---TTCG-----A-CATTATACAAGTAGGGTAGGCGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CA--ACCAGAAAC------ATTC-TCTTT--GAATAGAAAATC----AA-TACTTTGATGAAGAAA-CCAGCACA--A-AAATTATG-ATATGT-CGAAAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATATTG--TGGCG--TAGGGGGGCTGAGACGTGCTTT--AGT-TTTAGCAAA-GTTGG-TGACCAAAAATCAC--TGGA-TATTG-TTGGTATAAAAGTACATGTATAAGGAAAAGTCTTGG----ATCGGTTTGTTCAAAGAAAGGTATTATATA----TAATGCACAATTAAAATGACCAATGACGATTAAGGG-ATTATTCATTTGTATCAAT------TTACATTATTAC-----CCG-AAGACGA-ACTCACCCCACCCGCCCCCCTCCTCAACATAA--------AGGTAGTAACTATA-CCATCCACCCACCCCCTTTTCCAGGATTTAAAATAGAAGCCCA-GAGGGAAA-TTGAGACTGGATA-G------------------------TAACTGCTTGCTACCCTCT----ACCCACCCCA-CAATTTAGG-ATGTTGAAGTTT-GGACACGTGACAAATGTAAGTCGTA-ATCATCAGTG-CTGAT-CCCCCTTT-CAGTT-AAAAAAAA--CC-TCGTA-GCAT--CGTT-TTACATATTCCA-TTCACTTTGTCCACA--AGTCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGGT---------------TTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGGACAGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTTTAATTCGGTTGACAAGAATAACTTTGAATCTCGAA----------------------AGATCATGCTTTCGGTTGAAAACGCCAGAGTGAACATAATCACTGGCACCGTATCGGTGTGCGCTTCCTGATCGGCGATGGCACA----AGTCGA---AAATCCTCGCAACCAAATG-----------GTTATATTCCTTAAAGGTCGTGTCGTCTGTCTTGTCGTGCCTTTCATAAAAAATTAA-TGATTACAAAT
gi|1 : ATTTAAACAATTAATGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATAAACATCTAT----TCAAAGACTAGAGTTATTTATTCATTCACAGGG--------A-------TTTCTTCTCTTTCATTTGCTATATTTTGCAGTTGGGTAAGTGATTTTTCC-AATGTTTGAAAACACCATGACATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttaaacaattaatgactttctgtattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatgtaatgaacggaagaaaaaataaacatctattcaaagactagagttatttattcattcacagggatttcttctctttcatttgctatattttgcagttgggtaagtgatttttccaatgtttgaaaacaccatgacattt
gi|10 : actcattgtgtaaaattggaattattctagatgactaaaagtattgcacggaagacaatactgtagtcattgacacgctagcactggcacttagggacttaagaaatcttgggaatagctcaaacacttcgacattatacaagtagggtaggcggcgagtatatttttcggtgtatctgataaaaaatcttgatttctgctgcataaagttcaggtgtttcaaccagaaacattctctttgaatagaaaatcaatactttgatgaagaaaccagcacaaaaattatgatatgtcgaaaatttgactgaaaaccctgtgtggcgtaggggggtgggtgaaaatattgtggcgtaggggggctgagacgtgctttagttttagcaaagttggtgaccaaaaatcactggatattgttggtataaaagtacatgtataaggaaaagtcttggatcggtttgttcaaagaaaggtattatatataatgcacaattaaaatgaccaatgacgattaagggattattcatttgtatcaatttacattattacccgaagacgaactcaccccacccgcccccctcctcaacataaaggtagtaactataccatccacccacccccttttccaggatttaaaatagaagcccagagggaaattgagactggatagtaactgcttgctaccctctacccaccccacaatttaggatgttgaagtttggacacgtgacaaatgtaagtcgtaatcatcagtgctgatccccctttcagttaaaaaaaacctcgtagcatcgttttacatattccattcactttgtccacaagtctagtggacaaagtgaatgcattatgtaaaatacatgggttttcttgtgatgacttcagaaccaatggaatataccttgaacatgacggagaaaacaatacggctggagtactggacagggattctaaaaccttttctacgatggaaaatgaaatattcccaaggcatcaacatcttatggagtttcatttgtaatctgtttaattcggttgacaagaataactttgaatctcgaaagatcatgctttcggttgaaaacgccagagtgaacataatcactggcaccgtatcggtgtgcgcttcctgatcggcgatggcacaagtcgaaaatcctcgcaaccaaatggttatattccttaaaggtcgtgtcgtctgtcttgtcgtgcctttcataaaaaattaatgattacaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTGTTTCATTGGAAT-TATTCTAGATAA--CTTAATTAGAA-GTAGTGCACAGGAGACAAT-----GGTTATTGACAAGCTAGCAG----TCTCATTCCGGGAGTTCAGAAATTTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATtt
gi|11 : atcaccatgtacaatgccacatgcggggaccgtgattggtgtagcgcggggtgtgtgtatttgaagcggagaaagtaggtcggtaagtattcaaagactatCGGAGAAAACAATACGGCTGGGGTACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAA
gi|12 : TAACTGCTTGCCACCC-CTAGCACCCCACGCCA-CATTTTAAA-ATCTTGGAATTT-GAAAAAGTGACAAAAGTAACTCGTA-GTC
gi|13 : tgatgctggatagGAA----ATCCCAGTG-TGGC-GTCGGGGG-GGGGGTGAAACTCTTG--TGACG--TAGGGGGACTGAGACGCGCT
gi|14 : ttataT--GATAAGAAATCATGA-TTTCT--GTTGCATA-AAGTTC--AAGT-TTT--CT--AC
gi|16 : aTTTGCAGTTGAG--A------------AATGTTTGAAAACACCATGACATttgcaatctttgttcaaattgaa
gi|2 : ATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AGCA-TGTG-TGGC-TTAGGGGG-GT-----AAAATCTTG---GGC---TAGGGGGAGTGAGACGCGCTTTTAAGT-TTGAGGAAA-GTT-GGTGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTA------TAAGGAAAAGTCTTGG----A--------------GAAAGATATTATATA------ATGCGCAATTAAAATGACCAATGACGATTAAGGG-AT---------------AT------TTACA-T-GTA------CTGAAAGAC-A-A-TCA---CACCC-TCCCC--CCTCAACAAAATTGAGGTTAGGTAGTAAATACATCCACCCCCCCCCCCCCTTTTCCAGGATTTAAAATCGAAGCTCATGGGGGAAA-TTAAGGCTGGATA-GT-TACTGATT-----ATATTATTATAACTGCTTGCTACCCTCT----CCCCATCCCA-CAATTTAGG-ATGATGAAATTT-GGACAAGTCACAAAAGTAAGTCGTA-ATCTTCAGTA-CTGGT-CCCCCTTT-CAGTC---AAAAAA--CC-CCCTG-ATGTTACG-TGCTATA------AGGCCA----G----CATTAGACTAATGTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AAACCCTATGGAATATACCTTGACCATGACGGAGAAAACAATACGGCTGGAGCACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCACGGCATCAACATCTTATGGAGTTTCATTTGTAAGCTGTCTAATTCGGTTGACAAGAATAACTTTGAATCTTGAAAGGTCATATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAATGCCAGAATGAAAATAATCAATGGCACCGTCTCGGTGTGCACTTCCTGATCGGCAGTGGCACA--AGAAA----------CCTCGCAACCAAATGTTTTTATTACCGGTATATTCCTTAAAAGTTGTGTCGTCTGTCTTTTCGAG---TTAATATAAATGTAATTGATTACAAAT
gi|2 : gATTTAAACAATTACTGACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|2 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataACATGTAATGAACGGAAGAAAAAATTAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCATAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGTTCGGTTTTGCAGTT--G--AGTGATTTTT-TAAATGTTTGAAAACACCATGACATattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|3 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttAGAAAGGTATTATATA----GGATATGCAAGTAAATTTACCATTGGTGATTGAGCG-ATA-TTCAATTGC-TTAATAATTATTTAT-TT-TTACATGTACCGAAAGACGAGA-GTATTCCACC--------TCCTCAACAAAATTGAAGTTAGGCAGAGAATACGCCCAACCACCCACCCCC-TTCCCGGGATTTCAAATCGAAGTTCA-GGGGGAAA-CTGAGGCTGGNNN-NN-NNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNT---TGGTCCCCCCCTTTCACTTGAAAAAAAAAGCC-CCG
gi|3 : CGGGGATTCTAAAAACCCTTTTCTACGATGGAAAATGAAATAGTCCCAAGGCATCAAAATTTTATGGAGTTTCATTTGTAATATGTCTAATTCGGTTGACAAGAATTGCTTTGAATCCCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGAATACAAACGAGTGAGTAGAAAGAATCGATGGCACTATCTCGGGGAGCACTTCCTGTTTGGCAGTGCCTCAAGAGAGACGAGTCAAATACTCGCAACCAAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggattctaaaaacccttttctacgatggaaaatgaaatagtcccaaggcatcaaaattttatggagtttcatttgtaatatgtctaattcggttgacaagaattgctttgaatcccgaaaggttttatttatttttggtagagatcatgctttcgaatacaaacgagtgagtagaaagaatcgatggcactatctcggggagcacttcctgtttggcagtgcctcaagagagacgagtcaaatactcgcaaccaaa
gi|4 : agaaaggtattatataggatatgcaagtaaatttaccattggtgattgagcgatattcaattgcttaataattatttatttttacatgtaccgaaagacgagagtattccacctcctcaacaaaattgaagttaggcagagaatacgcccaaccacccacccccttcccgggatttcaaatcgaagttcagggggaaactgaggctggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggtccccccctttcacttgaaaaaaaaagccccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTCATTGTGCTTAATTGGAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGAAGAC--TA---TGGTTATGGACAAGCTGGCAC----TCGCACTTAGGAAGTTCAGAAATCTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATACAAGTAGGGTAGAAGGCG-AGTA-TA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-ACGTTC-------------G--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTCTTAAAA-TATACTTATGAAAAAAATCAGCACA--A-AATTCATG-AAATGT-CGAGAATTT--GA-CAAAA----AACCCTGTG-TGGC-GTAGGGGA-GTG----AAAATATTG--TGGCG--TAGGGGGACTGAAACGCGCTTT--AGT-TTTAGCAAA-GT---------------CACTG--GA-TATTGTTTTATATAAAAGT------GTAATGAAAAGTCTTGG----ATCATTTTGTTCAAAGAAAGGTATTATATATATAGAATACGCAATTAAAATTACCAATGACGATTGAGGGTAT--TTTATTTGT-TTAAT------TTACA--------------------CGT-A-TC-CCCC-CCC-CCCCCC
gi|5 : ccaccgcgtacaacgccacatgcggggaccgtgattggtgtagcgcggggtttgtgaatttgaagcggagaatgtaggtcggtaagtgttcaaagATTGTGTTTAATTAAAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGATTACAATA-----ACTATTGACAAGCTAGTAC----TCGCATTTTAGGAGTTCAAAAATCTTGGGAAATACTCAAACACG--TTCGTCACCA-CAATA--CAAGTGG---AGGCGGCGGAGTAATACTTTTTTTGTG-ATGCT--GATAA-AGTTCTTGACTTTCT--GCTGCATACAAGTTA--GGGTATTTTTCGC-ACCAGAAACCCATCCATCC-CCTTTCCGA-TG-AAACTC----AACTATTACTATTAGAAAA-GCAGCACACAACAAATTATG-ATATGT-CGAAAATCTCTGA-CTGAACAACAACCCTGCG-TGGCCGTAGGAGGTGTGAGGGAG---CGGGGGTGGCGGATAGGGGG-CTTAGACGCGCTTT--AGTATTTAGCAAACGTT-GCTGA-CAACAATCACTGTGGATTATTGTTTTGT-TAAAGCT-C----ATGAGGAAAA-TCTTGGATACATCTATTGGTCCAAAGAAA-GTATTATac
gi|6 : ccaccgtgtacaatgccacatgcgaggaccgtgattggtatatcacggggtttaagaatttgaagcggagaaagtaggtcggtaagtattcaaagacgtAAGCTCATGAGGAAAATCT-----TGGATACATCTATTGGTCCAAAGAAAGTATTATA-----TAGAAAAACTCT----CCCCACCCCAACAATTTAGATAGCTTGAAATTTTGGACAA-T-ACAAAGTCAAGTCGTACATCTTCAAGGTCTGGT-CCCCCTTTCCACTTGAAAAAAAA--CCACTGTGTACGT---G-C-C----------A-GC------GTCT-TA--GACCTT--G-GGACAAAGTGAATGCATTATGTAAAATTTACATGGATTTTTTTTTCAGGGAATTTCTTGTGATGACTTCGAGAACCACTGGAATATGCCCTGAACATGACGGAGAA------------------CTAAACTGGGATTCCAAAA--CCTTTTCTACGATGGAAAATGAAATAGCCCCAAGGCATAAAAATTTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGCTGACAAGAATAGCTTTGAATCTCGAAATGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGATTGCAAACGTCAGAGTGAAAATAAT
gi|7 : GTATTCAA--AGAACCTATTCTCGATAAACTT-----AGAATGTAGTGCACGGAAGACAA-A---TGGTTATTGACAAAC-AGCACGTACTCGCATTCCGGGAGTTCAGAAATCTTGG--AATGCTCAAACATACACTCG-----AACAAT-TACAAGTAGGGTAGA-AGCG-AGTG-TA-ATTTTCGGTGTAA-ATAAGATAAGAA--CCTGA-TTTCCTGGCTGCATA-AAGTTTCAAGGTTTTT--TCTTACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCAAC--A-AAATCATGAATATGTCCGAGTATTT--GACCTGAA----AACCCTGTGTTGGC-GTA-GGGG-GT---TGAAAATCTTG--TGGCC--TAGGGGGAGTGAGACGCGCTTT--AGT-TTCAaaataac
gi|8 : gtggattggtgtaaagcgtgtgcgtgtgtgtgtgtgtgtgtgtaaatttgaggcggagcaagtaggtcggtaATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-CAATATACAAGTAGGGTAGGCAGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-TTTTT--GAATGGAAACT
gi|9 : caccgtgtacaatgccacatgcggggaccatgattggtgtagcgcggggtgtgtgaatttgaagtggagaaagtcggttggtaagtatatattcaaagATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-ACATATACAAGT-GGGTAGGCAGCG-AGTG-TATTTTTTCGGTGTAT-CCTGGATAAGAAATCTTGA-TTTCT--GC-GCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTCTTTTTT--GAATGGAAAC
blockSeqs : C AC TAATT T TG GTAC C A ACA TCACC A A A G A C G AA G A C TG C CAA A TTCGC CCATCC T CC TTAA C A CA C A C CT C CAAC T C T GGGT GG GGA A TA A C TGG C A T T T T A CA G ATACATCTA T TATAGA G T ATTCAATTGCTTAATAATTAT TTTTACATGTACCGA G GAGTATT A CT C T G AT C T T T A CATCTATTGGTCCAAAGAAAG A C T AGCA A T C T G G A C GT C T G G AG A T TACGTGCTATAAGGCCAGCATT A AT T TT TTTTTTTT G G A AC AG CA AGAGAGACGAGTC TTTTTATTACC G T A . A T TG T C T ACAT CTTTTGTTACCAAAAT CG GAGTGATTTTTTA
blockSeqs : . . . . TG . A A G . . G C . . T . TG A A . . . A T TCTT . . . . . . . . . . . . . . . . GAGG . G A . . . TGC . C T T . T A A G ATCAT G GG T . TTTATTTGTTTAAT ATGTACTGA G ATCCC A CC . T A GC A . T . G GTTACTGATTATAT A T N . . . G . G C A . A . C C G . . . GCCAGCGTCTTA C . . . TTTTTT A . A . AG TT AGAAA GAGA
blockSeqs : . . . . G . T A . . . A C . . . . . G T . . . G G CT . . . . . . . . . . . . . . . . G . G A . . . . . . T . . T . G . A . . T . AT A . ATCA . . . . . . NNNNNNNNNNNNNN N N T . . . N . N N N . . . . C . . . . . AT TT
blockSeqs : . . . . . . C A . . . A C . . . . . G A . . . A G CG . . . . . . . . . . . . . . T . C A . . . A . . . . C . . . G . .
blockSeqs : . . . . . . A G . . . . . . . . . . G A . . . A . CG . . . . . . . . . . .
blockSeqs : . . . . . . A G . . . . . . . . . . . G
blockSeqCons : TG*** G***
originalCons : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTGGGTGAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGA-A-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA------A-GCCA----GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACA--AGAGACGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
finalCons : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATATG---GTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGCG-AGTG-TA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTGTTT--CG--ACCAGAAAC------ATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA--A-AAATCATG-ATATGT-CGAGAATTT--GA-CTGAA----AACCCTGTG-TGGC-GTAGGGGG-GTG---GAAAATCTTG--TGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGA-A-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA------A-GCCA----GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACA--AGAGACGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TCACCGCGTACAATGCCACATGCGGGAACCGCGACTGGT
Unaligned ( gi|17 ): TACCACCGTGTACAATGCCACATGCGGGGAC
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 11111 22222 1111 111 11111 1 11 111 11 111111 2222 1 11 11 1111 33333333 111 11 1 2222 1 4444444 222222222 333333 1 33333333333333333333333 55555555555555555 11111111 111 11 1 1 666666666666666666666 1111 11 1 1 1 11 1 1 2222222222222222222222222222222222222 11 11 22222222 1 11 3333333333333 44444444444 222 1 77777777777777777777777777777777777777777777777777777777777777777777777 2222 5555555555555555 333333333333333333
lowQualScore : 5 77 44444 5 88888 2222 1 0 1 555 44444 5 1 1 2 6 6 3 6 55 1 1 5 77 5 888 444 33 999999 6 99 1 1111 0 0 8 8 11 8 8 11 8 4444 6 6 6 11111111 99 111 1 11 8 0 9999 8 3 3 3 0 3 3 9999999 2 222222222 3 0 000000 1 0 11111111111111111111111 88888888888888888 2 22222222 3 222 8 7 3 22 1 7 0 5 0 6 0 111111111111111111111 2 1 2 7777 8 8 1 8 2 7 1 8 66 0 9 1 5 33 0 3 9999999999999999999999999999999999999 1 88 7 88 00000000 3 3 3 0 0 11 0 55 44 0 0 0 0 7777777777777 44444444444 1 1 1 000 1 1 22 5 1 11111111111111111111111111111111111111111111111111111111111111111111111 1 4444 9999999999999999 22 888888888888888888
lowQualScore : . .. ..... . ..... .... . . . ... ..... . . . . . . . . .. . . . .. . ... ... .. ...... . .. . .... . . . . .. . . .. . .... . . . ........ .. ... . .. . . .... . . . . . . . ....... . ......... . . ...... . . ....................... ................. . ........ . ... . . . .. . . . . . . . ..................... . . . .... . . . . . . . . .. . . . . .. . . ..................................... . .. . .. ........ . . . . . .. . .. .. . . . . ............. ........... . . . ... . . .. . . ....................................................................... . .... ................ .. ..................
lowQualScore : 7 99 33333 7 44444 1111 6 7 4 777 33333 7 7 7 5 7 7 3 7 77 7 7 7 99 7 000 444 66 222222 7 22 0 2222 0 2 0 0 00 0 0 00 0 2222 7 7 7 00000000 22 777 7 00 0 0 5555 8 0 2 2 0 2 2 8888888 5 888888888 0 8 888888 0 0 22222222222222222222222 55555555555555555 5 00000000 2 888 8 3 7 77 0 3 7 5 0 5 2 555555555555555555555 8 0 8 0000 0 0 0 0 2 2 0 0 55 0 0 0 0 88 0 3 7777777777777777777777777777777777777 0 33 3 33 77777777 7 3 2 8 8 00 6 88 22 2 7 7 7 3333333333333 55555555555 0 0 0 555 0 0 00 5 0 00000000000000000000000000000000000000000000000000000000000000000000000 0 0000 0000000000000000 00 000000000000000000
consensus : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGC-GAGT-GTA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTG--TTTCG--ACCAGAAA------CATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA-A--AAATCATG-ATATGT-CGAGAA--TTTGA-CTGAA----AACCCTGTG-TGG-CGTAGGGGG-GTG---G---AAAATC--TTGTGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGA-A-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA------A-GCCA----GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACA--AGAGACGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
Reference ( family-350 ) : ACTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATA---TGGTCATTGACAAGCTAGCAC----TCGCACTTAGGGAGTTCAGAAATCTTGGGAAATGCTCGAACAC---TTCG-----A-CAATATACAAGTAGGGTAGGCGGC-GAGT-GTA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTG--TTTCG--ACCAGAAA------CATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCACA-A--AAATCATG-ATATGT-CGAGAA--TTTGA-CTGAA----AACCCTGTG-TGG-CGTAGGGGG-GTG---G---AAAATC--TTGTGGCG--TAGGGGGACTGAGACGCGCTTT--AGT-TTTAGCAAA-GTT-G-TGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTAC----GTAAGGAAAAGTCTTGG----ATCGNTTTGTTCAAAGAAAGGTATTATATA----GAATGCGCAATTAAAATNACCAATGACGATTGAGGG-AT--TTCATTTGT-TTAAT------TTACATT-TTAC-----CCGAAAGACGA-A-TCACCCCACCC-CCCCCCTCCTCAACAAAATTGAGGTTAGGTAGTAAATACGCCCANCCACCCACCCCCTTTTCCGGGATTTAAAATCGAAGCTCATGGGGGAAA-CTGAGGCTGGATA-GT-TACTGGTC-----ANANTATTATAACTGCTTGCNACCCTCT----CCCCACCCCA-CAATTTAGG-ATNTTGAAATTT-GGACAAGTGACAAANGTAAGTCGTA-ATCTTCAGTG-CTGGT-CCCCCTTTCCANTTGAAAAAAAA--CC-CCGTG-ACGT--CG-T-CTACA------A-GCCA----GTCC-CA--AGNCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGAACGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGTTGACAAGAATAGCTTTGAATCTCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAACGCCAGAGTGAAAATAATCGATGGCACCGTCTCGGTGTGCGCTTCCTGATCGGCGGTGGCACA--AGAGACGA---AAATCCTCGCAACCAAATGTTTTTATTACCGNTATATTCCTTAAAGGTCGTGTCGTCTGTCTTNTCGNGCCTTTNATANAAANNTAATTGATTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAACAATTANTGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATNAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCACAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGCTNNGTTTTGCAGTTGGG--AGTGATTTTT-C-AATGTTTGAAAACACCATGACAT
gi|1 : ACTCATTGTGTAAAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCACGGAAGACAATACTGTAGTCATTGACACGCTAGCAC----TGGCACTTAGGGACTTAAGAAATCTTGGGAATAGCTCAAACAC---TTCG-----A-CATTATACAAGTAGGGTAGGCGGC-GAGT-ATA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTG--TTTCA--ACCAGAAA------CATTC-TCTTT--GAATAGAAAATC----AA-TACTTTGATGAAGAAA-CCAGCACA-A--AAATTATG-ATATGT-CGAAAA--TTTGA-CTGAA----AACCCTGTG-TGG-CGTAGGGGG-GTGGGTG---AAAATA--TTGTGGCG--TAGGGGGGCTGAGACGTGCTTT--AGT-TTTAGCAAA-GTTGG-TGACCAAAAATCAC--TGGA-TATTG-TTGGTATAAAAGTACATGTATAAGGAAAAGTCTTGG----ATCGGTTTGTTCAAAGAAAGGTATTATATA----TAATGCACAATTAAAATGACCAATGACGATTAAGGG-ATTATTCATTTGTATCAAT------TTACATTATTAC-----CCG-AAGACGA-ACTCACCCCACCCGCCCCCCTCCTCAACATAA--------AGGTAGTAACTATA-CCATCCACCCACCCCCTTTTCCAGGATTTAAAATAGAAGCCCA-GAGGGAAA-TTGAGACTGGATA-G------------------------TAACTGCTTGCTACCCTCT----ACCCACCCCA-CAATTTAGG-ATGTTGAAGTTT-GGACACGTGACAAATGTAAGTCGTA-ATCATCAGTG-CTGAT-CCCCCTTT-CAGTT-AAAAAAAA--CC-TCGTA-GCAT--CGTT-TTACATATTCCA-TTCACTTTGTCCACA--AGTCTA--GTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGGT---------------TTTCTTGTGATGACTTC-AGAACCAATGGAATATACCTTGAACATGACGGAGAAAACAATACGGCTGGAGTACTGGACAGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAATCTGTTTAATTCGGTTGACAAGAATAACTTTGAATCTCGAA----------------------AGATCATGCTTTCGGTTGAAAACGCCAGAGTGAACATAATCACTGGCACCGTATCGGTGTGCGCTTCCTGATCGGCGATGGCACA----AGTCGA---AAATCCTCGCAACCAAATG-----------GTTATATTCCTTAAAGGTCGTGTCGTCTGTCTTGTCGTGCCTTTCATAAAAAATTAA-TGATTACAAAT
gi|1 : ATTTAAACAATTAATGACTTTCTGTATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTAATGAACGGAAGAAAAAATAAACATCTAT----TCAAAGACTAGAGTTATTTATTCATTCACAGGG--------A-------TTTCTTCTCTTTCATTTGCTATATTTTGCAGTTGGGTAAGTGATTTTTCC-AATGTTTGAAAACACCATGACATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttaaacaattaatgactttctgtattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatgtaatgaacggaagaaaaaataaacatctattcaaagactagagttatttattcattcacagggatttcttctctttcatttgctatattttgcagttgggtaagtgatttttccaatgtttgaaaacaccatgacattt
gi|10 : actcattgtgtaaaattggaattattctagatgactaaaagtattgcacggaagacaatactgtagtcattgacacgctagcactggcacttagggacttaagaaatcttgggaatagctcaaacacttcgacattatacaagtagggtaggcggcgagtatatttttcggtgtatctgataaaaaatcttgatttctgctgcataaagttcaggtgtttcaaccagaaacattctctttgaatagaaaatcaatactttgatgaagaaaccagcacaaaaattatgatatgtcgaaaatttgactgaaaaccctgtgtggcgtaggggggtgggtgaaaatattgtggcgtaggggggctgagacgtgctttagttttagcaaagttggtgaccaaaaatcactggatattgttggtataaaagtacatgtataaggaaaagtcttggatcggtttgttcaaagaaaggtattatatataatgcacaattaaaatgaccaatgacgattaagggattattcatttgtatcaatttacattattacccgaagacgaactcaccccacccgcccccctcctcaacataaaggtagtaactataccatccacccacccccttttccaggatttaaaatagaagcccagagggaaattgagactggatagtaactgcttgctaccctctacccaccccacaatttaggatgttgaagtttggacacgtgacaaatgtaagtcgtaatcatcagtgctgatccccctttcagttaaaaaaaacctcgtagcatcgttttacatattccattcactttgtccacaagtctagtggacaaagtgaatgcattatgtaaaatacatgggttttcttgtgatgacttcagaaccaatggaatataccttgaacatgacggagaaaacaatacggctggagtactggacagggattctaaaaccttttctacgatggaaaatgaaatattcccaaggcatcaacatcttatggagtttcatttgtaatctgtttaattcggttgacaagaataactttgaatctcgaaagatcatgctttcggttgaaaacgccagagtgaacataatcactggcaccgtatcggtgtgcgcttcctgatcggcgatggcacaagtcgaaaatcctcgcaaccaaatggttatattccttaaaggtcgtgtcgtctgtcttgtcgtgcctttcataaaaaattaatgattacaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGTGTTTCATTGGAAT-TATTCTAGATAA--CTTAATTAGAA-GTAGTGCACAGGAGACAAT-----GGTTATTGACAAGCTAGCAG----TCTCATTCCGGGAGTTCAGAAATTTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATtt
gi|11 : atcaccatgtacaatgccacatgcggggaccgtgattggtgtagcgcggggtgtgtgtatttgaagcggagaaagtaggtcggtaagtattcaaagactatCGGAGAAAACAATACGGCTGGGGTACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCAAGGCATCAACATCTTATGGAGTTTCATTTGTAA
gi|12 : TAACTGCTTGCCACCC-CTAGCACCCCACGCCA-CATTTTAAA-ATCTTGGAATTT-GAAAAAGTGACAAAAGTAACTCGTA-GTC
gi|13 : tgatgctggatagGAA----ATCCCAGTG-TGG-CGTCGGGGG-GGG---GGTGAAACTC--TTGTGACG--TAGGGGGACTGAGACGCGCT
gi|14 : ttataT--GATAAGAAATCATGA-TTTCT--GTTGCATA-AAGTTC--AAGT---TTTCT--AC
gi|16 : aTTTGCAGTTGAG--A------------AATGTTTGAAAACACCATGACATttgcaatctttgttcaaattgaa
gi|2 : ATGAAGAAA-CCAGCACA-A--AAATCATG-ATATGT-CGAGAA--TTTGA-CTGAA----AGCA-TGTG-TGG-CTTAGGGGG-GT--------AAAATC--TTG-GGC---TAGGGGGAGTGAGACGCGCTTTTAAGT-TTGAGGAAA-GTT-GGTGACCAAAAATCACTGTGGA-TATTGTTTTGTATAAAAGTA------TAAGGAAAAGTCTTGG----A--------------GAAAGATATTATATA------ATGCGCAATTAAAATGACCAATGACGATTAAGGG-AT---------------AT------TTACA-T-GTA------CTGAAAGAC-A-A-TCA---CACCC-TCCCC--CCTCAACAAAATTGAGGTTAGGTAGTAAATACATCCACCCCCCCCCCCCCTTTTCCAGGATTTAAAATCGAAGCTCATGGGGGAAA-TTAAGGCTGGATA-GT-TACTGATT-----ATATTATTATAACTGCTTGCTACCCTCT----CCCCATCCCA-CAATTTAGG-ATGATGAAATTT-GGACAAGTCACAAAAGTAAGTCGTA-ATCTTCAGTA-CTGGT-CCCCCTTT-CAGTC---AAAAAA--CC-CCCTG-ATGTTACG-TGCTATA------AGGCCA----G----CATTAGACTAATGTGGACAAAGTGAATGCATTATGTAAAAT--ACATGGATTTTTTT--CAGGGGATTTCTTGTGATGACTTC-AAACCCTATGGAATATACCTTGACCATGACGGAGAAAACAATACGGCTGGAGCACTGAATGGGGATTCTAAAA--CCTTTTCTACGATGGAAAATGAAATATTCCCACGGCATCAACATCTTATGGAGTTTCATTTGTAAGCTGTCTAATTCGGTTGACAAGAATAACTTTGAATCTTGAAAGGTCATATTTATTTTTGGTAGAGATCATGCTTTCGGTTGCAAATGCCAGAATGAAAATAATCAATGGCACCGTCTCGGTGTGCACTTCCTGATCGGCAGTGGCACA--AGAAA----------CCTCGCAACCAAATGTTTTTATTACCGGTATATTCCTTAAAAGTTGTGTCGTCTGTCTTTTCGAG---TTAATATAAATGTAATTGATTACAAAT
gi|2 : gATTTAAACAATTACTGACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|2 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataACATGTAATGAACGGAAGAAAAAATTAACATCTATACATTCAAAGACTAGAGTTATTTATTCATTCATAGGGCTTTTGTTACCAAAATTTTCTTCCCCTTCATTTGTTCGGTTTTGCAGTT--G--AGTGATTTTT-TAAATGTTTGAAAACACCATGACATattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttacatgtaatgaacggaagaaaaaattaacatctatacattcaaagactagagttatttattcattcatagggcttttgttaccaaaattttcttccccttcatttgttcggttttgcagttgagtgattttttaaatgtttgaaaacaccatgacat
gi|3 : gatgaagaaaccagcacaaaaatcatgatatgtcgagaatttgactgaaagcatgtgtggcttaggggggtaaaatcttgggctagggggagtgagacgcgcttttaagtttgaggaaagttggtgaccaaaaatcactgtggatattgttttgtataaaagtataaggaaaagtcttggagaaagatattatataatgcgcaattaaaatgaccaatgacgattaagggatatttacatgtactgaaagacaatcacaccctcccccctcaacaaaattgaggttaggtagtaaatacatccacccccccccccccttttccaggatttaaaatcgaagctcatgggggaaattaaggctggatagttactgattatattattataactgcttgctaccctctccccatcccacaatttaggatgatgaaatttggacaagtcacaaaagtaagtcgtaatcttcagtactggtccccctttcagtcaaaaaaccccctgatgttacgtgctataaggccagcattagactaatgtggacaaagtgaatgcattatgtaaaatacatggatttttttcaggggatttcttgtgatgacttcaaaccctatggaatataccttgaccatgacggagaaaacaatacggctggagcactgaatggggattctaaaaccttttctacgatggaaaatgaaatattcccacggcatcaacatcttatggagtttcatttgtaagctgtctaattcggttgacaagaataactttgaatcttgaaaggtcatatttatttttggtagagatcatgctttcggttgcaaatgccagaatgaaaataatcaatggcaccgtctcggtgtgcacttcctgatcggcagtggcacaagaaacctcgcaaccaaatgtttttattaccggtatattccttaaaagttgtgtcgtctgtcttttcgagttaatataaatgtaattgattacaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaaataatttaaacaattactgactattgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttatgattcttgtttAGAAAGGTATTATATA----GGATATGCAAGTAAATTTACCATTGGTGATTGAGCG-ATA-TTCAATTGC-TTAATAATTATTTAT-TT-TTACATGTACCGAAAGACGAGA-GTATTCCACC--------TCCTCAACAAAATTGAAGTTAGGCAGAGAATACGCCCAACCACCCACCCCC-TTCCCGGGATTTCAAATCGAAGTTCA-GGGGGAAA-CTGAGGCTGGNNN-NN-NNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNN-NNNNNNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNT---TGGTCCCCCCCTTTCACTTGAAAAAAAAAGCC-CCG
gi|3 : CGGGGATTCTAAAAACCCTTTTCTACGATGGAAAATGAAATAGTCCCAAGGCATCAAAATTTTATGGAGTTTCATTTGTAATATGTCTAATTCGGTTGACAAGAATTGCTTTGAATCCCGAAAGGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGAATACAAACGAGTGAGTAGAAAGAATCGATGGCACTATCTCGGGGAGCACTTCCTGTTTGGCAGTGCCTCAAGAGAGACGAGTCAAATACTCGCAACCAAAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggggattctaaaaacccttttctacgatggaaaatgaaatagtcccaaggcatcaaaattttatggagtttcatttgtaatatgtctaattcggttgacaagaattgctttgaatcccgaaaggttttatttatttttggtagagatcatgctttcgaatacaaacgagtgagtagaaagaatcgatggcactatctcggggagcacttcctgtttggcagtgcctcaagagagacgagtcaaatactcgcaaccaaa
gi|4 : agaaaggtattatataggatatgcaagtaaatttaccattggtgattgagcgatattcaattgcttaataattatttatttttacatgtaccgaaagacgagagtattccacctcctcaacaaaattgaagttaggcagagaatacgcccaaccacccacccccttcccgggatttcaaatcgaagttcagggggaaactgaggctggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttggtccccccctttcacttgaaaaaaaaagccccgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTCATTGTGCTTAATTGGAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGAAGAC--TA---TGGTTATGGACAAGCTGGCAC----TCGCACTTAGGAAGTTCAGAAATCTTGGGAAATGCTCAAACAC---TTCG-----A-CAATATACAAGTAGGGTAGAAGGC-GAGT-ATA-TTTTTCGGTGTAT-CT--GATAAAAAATCTTGA-TTTCT--GCTGCATA-ACGTTC-------------G--ACCAGAAA------CATTC-CCTTT--GAATGGAAACTCTTAAAA-TATACTTATGAAAAAAATCAGCACA-A--AATTCATG-AAATGT-CGAGAA--TTTGA-CAAAA----AACCCTGTG-TGG-CGTAGGGGA-GTG-------AAAATA--TTGTGGCG--TAGGGGGACTGAAACGCGCTTT--AGT-TTTAGCAAA-GT---------------CACTG--GA-TATTGTTTTATATAAAAGT------GTAATGAAAAGTCTTGG----ATCATTTTGTTCAAAGAAAGGTATTATATATATAGAATACGCAATTAAAATTACCAATGACGATTGAGGGTAT--TTTATTTGT-TTAAT------TTACA--------------------CGT-A-TC-CCCC-CCC-CCCCCC
gi|5 : ccaccgcgtacaacgccacatgcggggaccgtgattggtgtagcgcggggtttgtgaatttgaagcggagaatgtaggtcggtaagtgttcaaagATTGTGTTTAATTAAAAT-TATTCTAGATAA--CT-----AAAA-GTATTGCACGGATTACAATA-----ACTATTGACAAGCTAGTAC----TCGCATTTTAGGAGTTCAAAAATCTTGGGAAATACTCAAACACG--TTCGTCACCA-CA--ATACAAGTGG---AGGCGGCGGAGTAATACTTTTTTTGTG-ATGCT--GATAA-AGTTCTTGACTTTCT--GCTGCATACAAGTTA--GGGTATTTTTCGC-ACCAGAAACCCATCCATCC-CCTTTCCG-AT-GAAACTC----AACTATTACTATTAGAAAA-GCAGCACACAACAAATTATG-ATATGT-CGAAAATCTCTGA-CTGAACAACAACCCTGCG-TGGCCGTAGGAGGTGTG---A---GGGAGCGGGGGTGGCGGATAGGGGG-CTTAGACGCGCTTT--AGTATTTAGCAAACGTT-GCTGA-CAACAATCACTGTGGATTATTGTTTTGT-TAAAGCT-C----ATGAGGAAAA-TCTTGGATACATCTATTGGTCCAAAGAAA-GTATTATac
gi|6 : ccaccgtgtacaatgccacatgcgaggaccgtgattggtatatcacggggtttaagaatttgaagcggagaaagtaggtcggtaagtattcaaagacgtAAGCTCATGAGGAAAATCT-----TGGATACATCTATTGGTCCAAAGAAAGTATTATA-----TAGAAAAACTCT----CCCCACCCCAACAATTTAGATAGCTTGAAATTTTGGACAA-T-ACAAAGTCAAGTCGTACATCTTCAAGGTCTGGT-CCCCCTTTCCACTTGAAAAAAAA--CCACTGTGTACGT---G-C-C----------A-GC------GTCT-TA--GACCTT--G-GGACAAAGTGAATGCATTATGTAAAATTTACATGGATTTTTTTTTCAGGGAATTTCTTGTGATGACTTCGAGAACCACTGGAATATGCCCTGAACATGACGGAGAA------------------CTAAACTGGGATTCCAAAA--CCTTTTCTACGATGGAAAATGAAATAGCCCCAAGGCATAAAAATTTTATGGAGTTTCATTTGTAATCTGTCTAATTCGGCTGACAAGAATAGCTTTGAATCTCGAAATGTTTTATTTATTTTTGGTAGAGATCATGCTTTCGATTGCAAACGTCAGAGTGAAAATAAT
gi|7 : GTATTCAA--AGAACCTATTCTCGATAAACTT-----AGAATGTAGTGCACGGAAGACAA-A---TGGTTATTGACAAAC-AGCACGTACTCGCATTCCGGGAGTTCAGAAATCTTGG--AATGCTCAAACATACACTCG-----AACAAT-TACAAGTAGGGTAGA-AGC-GAGT-GTA-ATTTTCGGTGTAA-ATAAGATAAGAA--CCTGA-TTTCCTGGCTGCATA-AAGTTTCAAGGTT--TTTTCTTACCAGAAA------CATTC-CCTTT--GAATGGAAACTC----AA-TATTCTTATGAAGAAA-CCAGCAAC-A--AAATCATGAATATGTCCGAGTA--TTTGACCTGAA----AACCCTGTGTTGG-CGTA-GGGG-GTT---G---AAAATC--TTGTGGCC--TAGGGGGAGTGAGACGCGCTTT--AGT-TTCAaaataac
gi|8 : gtggattggtgtaaagcgtgtgcgtgtgtgtgtgtgtgtgtgtaaatttgaggcggagcaagtaggtcggtaATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-CAATATACAAGTAGGGTAGGCAGC-GAGT-GTA-TTTTTCGGTGTAT-CT--GATAAGAAATCTTGA-TTTCT--GCTGCATA-AAGTTC--AGGTG--TTTCG--ACCAGAAA------CATTC-TTTTT--GAATGGAAACT
gi|9 : caccgtgtacaatgccacatgcggggaccatgattggtgtagcgcggggtgtgtgaatttgaagtggagaaagtcggttggtaagtatatattcaaagATTCATTGTGTTTAATTGGAAT-TATTCTAGATGA--CT-----AAAA-GTATTGCATGGAAGACAATA-----GTCATTGACAAGCTAGCAC----TCGCACTTAAGGACTTCAGAAATCTTGGGAAATGCTCGAACAC---TTTG-----A-ACATATACAAGT-GGGTAGGCAGC-GAGT-GTATTTTTTCGGTGTAT-CCTGGATAAGAAATCTTGA-TTTCT--GC-GCATA-AAGTTC--AGGTG--TTTCG--ACCAGAAA------CATTCTTTTTT--GAATGGAAAC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TCACCGCGTACAATGCCACATGCGGGAACCGCGACTGGT
Unaligned ( gi|17 ): TACCACCGTGTACAATGCCACATGCGGGGAC