lowQualScore : 11111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 333 11 2 33 11 1 3333333333333 11111111111111111111111111111111111111111111111111 1111 2222222222 444444444444 444444444444444444444 1111 44444444 3333333333 2 11 111 33 1111111111111111111111111111111111111 2222 1 22 4444444444444444 1 5555555555555555 33333333 333333 1 11 33333333333333333333333333333333333333333333333333333333333333333333333333 33333 1 111111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 22 11 1 11 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11111 77777777777777777 1111 2 77777777 333333333333333333333 111 11 11 222222 22 1 3333333 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22
lowQualScore : 6 5 444 11 5 5 4 22 4 5 33 5 66 5 7777777777777 1 55555555555555555555555555555555555555555555555555 9999 3333333333 777 1 888 666666666666 4 1 66 444444444444444444444 5 9999 77777777 0 1 7777777777 2 5 11 333 11 2222222222222222222222222222222222222 5555 3 00 0 0 8888888888888888 3 6 4444444444444444 88888888 8 999999 0 1 7 66 11111111111111111111111111111111111111111111111111111111111111111111111111 3 22222 0 2 777777 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 22 2 3 22 0 0 33 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 77777 8 8 55555555555555555 4444 99 3 8 00000000 99 1 99 000000000000000000000 444 11 33 1 888888 2 00 6 0 1 2222222 8 3 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11
lowQualScore : . . ... .. . . . .. . . .. . .. . ............. . .................................................. .... .......... ... . ... ............ . . .. ..................... . .... ........ . . .......... . . .. ... .. ..................................... .... . .. . . ................ . . ................ ........ . ...... . . . .. .......................................................................... . ..... . . ...... ........................................................................................................ .. .. . . .. . . .. . ........................................................................................................................................................................................... . ..... . . ................. .... .. . . ........ .. . .. ..................... ... .. .. . ...... . .. . . . ....... . . ......................................................................................................................................................................................................................................................................................................................................................................................... ..
lowQualScore : 9 0 888 99 0 0 0 99 4 0 77 0 99 0 0000000000000 7 66666666666666666666666666666666666666666666666666 9999 4444444444 888 0 333 666666666666 4 9 11 555555555555555555555 0 8888 55555555 6 4 5555555555 9 7 00 555 22 3333333333333333333333333333333333333 0000 3 33 7 7 8888888888888888 3 7 7777777777777777 55555555 0 000000 6 4 0 88 44444444444444444444444444444444444444444444444444444444444444444444444444 2 22222 0 2 222222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 00 5 0 55 2 0 88 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 55555 0 0 22222222222222222 2222 22 4 0 22222222 22 0 22 888888888888888888888 000 00 88 2 888888 5 55 0 0 2 5555555 3 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00
consensus : NCTGTTNA-CCCTCAA--CGAA-GCCTGTCAGTAAGATTTTC-CGAA-TTT-T-NGAGTTTT--GTCA-GTACA---------A-TCACCAGCGAGTG--------G-CCAC-AATAC---NACA-AA-TATTT--AAGTCGG-GGGGGGGGGGTGTCCCCA---AG-----AA---ATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTT--ATC-----AG--TTTAGACT-G-ACT-AGAC--AGACTGAAA--A---GACGGGTAAAATGTTGGACNTAGG--TTACACATTTTCAATGAAA-TCT--GAGAATATACTA-TTTTTTGTAAT--ATGTATGTCCAATGATCTAAGATTGGAACGATC-NAGTCATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-NTG-------AAAG-TAA-C-TTATCA------NT---T----TAGACTA------GACAGACTG-AAAA-----GACAGGTAAAATGTTGGACAAGGTTACACACATTT----TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTT--------------------TTTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTTACA-TAA-ANCATTTTAACG-T----C-CTA-C-AA-TAGACACT-CTGAATNTAGA-A---------CTC-GN-T-C-GAAAGGTTCT--GATCATCG-TAT---CT-AAGAC-TGGCCANGGGACAAATNCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-GC--TCG----AG-------------CCTGCA--------GTCGGT--CAA----T-CC---GAGTCTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACC-ATCTTTG---A-TATTCGTGGTGAGACT---------TC---GATTCTGCATGTC--GACGGCAATCA-TTCCTT-CCCCCG-TGCG-C--AA-T--TGCGA----AGT--TCATTT-CA-CATACTGAACA-ACAA---ACAT--ACCTTTCGC--C-T--T-G-GAC----------GATTA---GTCA--AAAACGGC--CATA------TTTCTATA-TAAGAATCTT-TAAACCT-------AAGTGAA-AATGATTTTCGTAACGATTATTTGCGTCANTTGNTTCACCAGCCTTGAGTCCAAATTTCNGTCAAGAAAGNAGACATCTCTCGATTCTCTNCCGCGATCAGTCATCGACTAGCAAGCAATTAGCTGCATCCAAAGAACNACANCNNAAACTGCTCNTATAAAAATGCTATGTAATCAGATAANACTTTNNANGNNAAACGCCAAGCGACTTAATGACTGATCAGACTTCAGTGTTTCACNGTCCACNTTAACATTGTTGATGAGTTGATTTAGAAGTCGAGCGAATTATATTGGTTAACNAACTCAAATANAAANNCACGCAATTTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTTGGCTTTCT
Reference ( gi|1 ) : ACTGTTTA-CCT--AA--CGAA-GC-TGCCAGTAAGATTTTCTTGAA-TTT-T-AGAG-TTT--GTCA-GTACA---------A-TAACCAGCGAGTG--------GCTCACTAATAC---CACA-AA-TATTT--TA-TCGGAGGGAGGGGGGTGTCCCCA---GG-----AA---ATTTTAAAATAA--TAC-A-TG-------AAAGTAAC-CTT--ATT-----A---TTTAGATT-G-ACT-AGAC--A-ACTGAGA--AT--GACAGGTAAAATGTTGTACCTAGGTTTTACACATTTTCAATG-AA-TCT--GAGAATATTCTATTTTTTTGTAATACATGTATGTCCAATGATCTAAGATTG--ATGATCAAAGTCATT-TTCTTGGT-CCA-AGGAAATCTTGAAATAATACA-TTG-------AAGA-TAA-C-TTATTA------TC---T----TAGACTA------G-CAGACTG-AAA------GACAGGTAAAATGTTGGACTAGGTTTCACACAATT--AATGCATGAACATC--T--GAGAAT-TA-----TACT--------ATTT--------------------TTTTGTAATATG--T--CCTTT-CAACGATTCAGTGATTTCACACTAACAGCATGTTAATGGT----C-CTA-C-AG-TAGAC-CT-CTGAATCTAAA-A---------CTC-GG-T-CTGA-----TCT--GA-CATCGCTAT---CT-AAGAC-TGGCCAGGGGACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-GC-ATTGCATTAGTCGGTCACTATGCCTTGCA---TT--CGTCGGT--CAA----T-CC---GAGTCT-AGAGCTT----G-TACAG---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAA---ATTTT-----A-TATTCATGATGAGAGTCAGAGA-TGTC---GATTCTGCATGTC--AACGGCAATCA-TTCCTT-CCCC-G-TG-G-C--A-----TGCGA----AGT--TCATTTTCA-CATACTGAACA-A-AACCCACAT--ACCTTTCAC--C-T--T-G-GAC----------GATTA---GTCA--AAAACGGC--CATA------TTTCTATT-TAAAAATCTT-TAAACCT-------ATGTGAA-AATA--TT--GT--------TTC---TCAG-TGATT-ATCAG--TTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCAT---------CCGACTAGC-AGC-AT--GCTGGATTCA------TACATCTCAA-----TCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTTGCGTTAAA--T---ACG-CTT--TG-CTAATC-GA-TTCAG-AT----CGAT-CACATTAACAT----------T-------AAAATCG---GAATT---CTTGT--ACAAA-------AAAAAAA---G-AATTTTTTT----TTTTA-----TACCGTAATTTTACGCA-CGACGA-CG-TACAAGT-TTTTTTACCTTTCT
gi|4 : CTGTT-A-CCT--AA--CGAG-CC-TGTCAGTAAGATTTTCCCGAA-TTT-T-AGAGTTTT--GTCA-GTAC----------A-TCACCAGCGA--G--------GTCCACCAATA----CACA-AATTATTTA-AA-TCGGTAGGAGGGGG--GTCCCCA---AG-----AA---ATTTTAAAATAATTTAC-ATTG-------AA---AACGCTT--ATT-----AGG-TATAGACT-G-ACTGAGAC--AGACTGAAA------GACAGATAAAATGTTGGACGTAGG--TTACACATTTTCAATGAAA-TCT--GAGAATATTCTA-TTTTTTGTAATACA-G-ATGT-CAATGATTTAAGATTGGAATGAT--AAGTCATTCTTTTTGGTACCC-AAGAAATCTTGAAATAATACATTTG-------AAAG-TAC-C-TTATTA------T----T----TAGACTA------GACAGAATG-AAA------TACAGGTAAAATGTTGGACAA--TTTCA--------------ATGAA-ATC--T--GAGAAC-TAT----TACT--------A--T--------------------TTTTGTAATATG--T--CCCTTGCAACGATCCAGTAATT---CAATCA-AGCACTTTAAT-GT----CACTA-C-CA-TAGACACTATTGAATCAGAACA---------CTC-GGTT-CTGA-----TC---GA-CATCG-TAT---CT--AGAC-TGGCCA-GGGACAAATGCATGATTCCC-AATGGCAGCTGACA-TTGCATA-GCAATTGCATTA-TCGGTC-----------------------------CAA----T-CT---GAGTCT--GAGCTT----G-TACA----AA-TGACTTGAA---A-AGT---TC---TATTGG-TAG-A
gi|6 : gacCTGTTTA-CCCTAAA--CGAA-GCCTGTCAGTAAGATTTTC-CGAATTTT-T-AGAGTTTT--GTCA-GTACA---------A-TCACCAGCGAACG-------------------C---CAC--AA-TATTT--AAGTCGG-----GGGGG------CCA---AG-----AA---ATTTTGAAATAA--TACTG-TA-------ACAGTAAC-CTT--ATT-----AG--TTTATTTA-G-ACT-AGAC--A--------------GACGTGTAAAATGTTGGA-CTAGG--TTACACATTTTCAATGAAA-TCA--AAGAGTATACTA--TTTTTGTACT--ATGT---TCC------CT----TTGA-ACAATC-CAGTCATT-TT-TTGAT-CCCTAAGAAATTTTGAAATAATACA-TTG-------AAAAGTAACC-TTATTA------GT---T----TAGATTA------GACAGACTGAAAA------GACGGGTAAAATGTTGGACAAGGT---ACACATTT----TCAATGAA-ATCAAT--TAGAAT-TAGAATGTACT--------A--T--------------------TTTTGTAATATGA-C--CCTTT-CAACGATCCAGTGATTTCA
gi|5 : acCCGTTTA-CTTTCAA--TGAA-GCCTGTCAGTAAGATTTGCA-GAA-TTT-TTCGAG-TTT--GTCA-GTACA---------A-TCACCAGAGAGTG----------CCAC--ATAC---T-CA-AG-T----------CGG------GAAGAT-CCCCCA---TG-----AA---ATTTTGGAATAA--TAC-ACTGTACATCAAAAGTAAC-C-T--ATC-----AG--TTTAGACT-ACACT-AGAC--AGACTGAAA--A---GACAAGGAAATTAATGGACA-AGGTTACACACATTTTCAATGAAA-TCTGAGAGAATA---TATACTTTTGTaat
gi|8 : gacCTGTTAA-CCCTCAA--TTAA-GCCTGTAAGTAAGATTATCT-GAA-TTT-T-TAGT-TTT--GTCA-GTACATTGAGTACAA-TCACCAGTGAGTGCCACAAATGCCCAC-AATAC---GACA-CA-TATCT--AA-GTGGGGGGGGGGGGGTGTCCCCA---AT-----AA---ATCTTGAAACAT--TGCAA-TG-------AAAGTAAC-CTT--ATC-----AG--TTTA-----G-ACT-AGAC--A-Accaattttttttttttttttttttgctttttgcaaaatgtctcctttcaatgatccagtgatgttaataacaacttttgagctcttccctaccattagacactctgaatttagaatatggaaacctcattcgaaaggttttgatcatcgtatagacaaggacaaattcttgttcaaaatcagctgaaattgcatagctt
gi|22 : agacCTGTTTA-CCC--AAAACGAA-GCCTGTCAGTAAGAGTTCCCAAAT-TTT-T-AGAGTTTT--GTCA-GTACA---------A-Ta
gi|28 : gcCTGTTAA-CCCTCAA--TCAA-GC-TGCCAGTAAGATTCTC-TGAA-TTT-T-
gi|12 : CTGTTTAACCT--AAA-CGAACAC-TGTCAGTAAGATTTTC
gi|27 : acCTGTTAA-CCCTCAA--TGAA-GCCTGTCAGTAAGATTATC-TGAA-Tcgatgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|9 : gacATTTTCAGCAA-TTTCT-GAAG-TTTCTGTTAAGTACA---------GGTTATCAGTGAGTG----------TCAGCAATACTGGCACA------CTTAACA-TCAGGAGGAGGCGGGCATCCCCCCTTAA-----AA---GTTATAAAATA----AC-T-TT-------AAAATA---CTTAAATC-----ATCTTTTAGACT-ACACT-AGACCAG-ACTGAAA--A---GACGG
gi|7 : GAA-TTT-TTCGAG-TTT--GTCA-GCACA---------A-TCACCAGAGAGTG----------CCAC-AATAT---GGCA-CA-TACTC--AAGTCTG------GAAGAT-CCCCCA---TG-----AA---ATTTTGGAATAA--TAC-ACTGTACATCAAAAGTAAC-C-T--ATC-----AG--TTTACACTAG-ACT-AGAC--AGACTGAAA--A---GACAGGGAAATTATTGGACA-AGGTTACACACATTTTCAATG-AA-a
gi|13 : gatttgca-TTT--GTCA-GTACATTGAGT---A-CAATCACCAAGTGAGT-----GC-CAC-AATAC---GACATAA-TATTT--AAGTCGG-GGGGGGGGGGTG-----G---GGGGGGCAATACATTTTGAAA-AA--CACAA-TG-------AAAGTAAC-CTT--A
gi|20 : agtGGGGGGGGTCCC-A---CT-----AA---ATTTTAAAATAT--TACAA-TG-------AAAGTAGC-CTT--ATC-----A---GTT---TG-G-ACT-AAAC--A-AATGa
gi|11 : CCCA---AG-----AA---ATTTTGAAATAA--TAT-A--G-------TACCTAAC-CTT--ATTAGACAA---CTCAGTTTAG-ACT-AGACA-A-ACTGAAATGATAAGACAGGTAAAATGTTGGACA-AGG--TTACACATTTTCAATGAAA-TCT--GAGAcaaa
gi|12 : gttgTTGGACTTGG---TTACACATTTTCAATG-AA-
gi|23 : acctgtttaacctaaacgaacactgtcagtaagattttccgatgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtTTTTCAATG-AAATCT--GAGAATATATTA-TTTTTTGTAAT--ATGTAatc
gi|11 : GC-CCA-AG-AAATTTTGAAATAATATA-GT---------ACC-TAA-CCTTATTAGACAACTCAGTT----TAGACTA------GACAAACTG-AAATGATAAGACAGGTAAAATGTTGGACAAGGTT--ACACATTT----TCAATGAA-ATC--T--GAGAacctttgaacgattgac
gi|5 : gttGAAATTTTGGAATAATACA-CTGTACATCAAAAG-TAA-C-CTATCA------GT---T----TAGACTACACTAGA-CAGACTG-AAAA-----GACAAGGAAATTAATGGACAAGGTTACACACATTT----TCAATGAA-ATC--TGAGAGAATATA-----TACTTTTGTCCAATTTTTTTTTTTTTTTTTTTTGCTTTTTGCAAAATGTCT--CCTTT-CAATGATCCAGTGATGTTA-A-TAACAAC-TTTTGA-GCTCTTCC-CTACC-AT-TAGACACT-CTGAATTTAGA-ATATGGAAACCTC-AT-T-C-GAAAGGTTTT--GATCATCG-TAT-------AGAC-------AAGGACAAATTCTTG-TTCAA-AAT--CAGCTGAAA-TTGCATA-GC-
gi|7 : gacccgtttactttcaatgaagcctgtcagtaagatttgcagaatttttcgagtttgtcagtacaatcaccagagagtgccacatactcaagtcgggaagatcccccatGAAATTTTGGAATAATACA-CTGTACATCAAAAG-TAA-C-CTATCAG-----TT---TACACTAGACTA------GACAGACTG-AAAA-----GACAGGGAAATTATTGGACAAGGTTACACACATTTTCAATGtt
gi|8 : gatttgcagaatttttcgagtttgtcagcacaatcaccagagagtgccacaatatggcacatactcaagtctggaagatcccccatAAATCTTGAAACATTGCA-ATG-------AAAG-TAACC-TTATCA------GT---T----TAGACTA------G-aa
gi|23 : agacctgttaaccctcaattaagcctgtaagtaagattatctgaatttttagttttgtcagtacattgagtacaatcaccagtgagtgccacaaatgcccacaatacgacacatatctaagtgggggggggggggtgtccccaatATGAA-ATC--T--GAGAAT--A-----TATT--------ATTT--------------------T-TTGTAATATG--TAACCTTT-GAACGATTacaaa
gi|2 : ttttcaTTTTACACTAA-ACCATAACAACA-T----G-CCA-C-AAATA-------CTGAAC----A-A---------TTCTGG-TGCGGA-----TCTTGAA-CATCA-TAT---CT-A-GACATGGCCAGG--ACAAATGCAT--TTCGCGAAT--CAGCTGACAATTGCATA-A----------AG------ACTATTATCTGCAATGTTAGCGTCGGTACCAAAATAC-CCAAAGAATAC-AGAGCTTTGAAG--ACAAAAAGA-TGA-TTGAAGAAA-AGTATCTCATATATTGGATAGTATGTTATGGTAACC-ATCTTTAA--A-TATGCGAGAT-AGAGT---AGACTATCTTTGATTCT-CATGTATAAACAGCAATCA-TT-CTT-CCCG-C-TG-GAC--AATT--CGCGA----AGTTCTCATTTCGAGCATATAGAACACC-AACACACATCAACCCTACACAGCGTGAT-G-GATAGAACTATAAGATTT---TTCAACAAAACTGCTTCAAATGGACTTTTCAATTGTACGAAACTTGTAAACATTTAATTCATGTAAC-AATA--TTTCGTAACGATTATTTGCGTCAT-TGAT---TCAGCCTTGAATCCAA---TCAGTCAAGAAAGTAAA-----------TTTCTCCTGC---------TCGACTAGCAAGCAATTAGCTGCATCCAAAGAACGACAATACAAACTGCTCTTATAAAAATGTTATGTAATCAGATAAAACTTTTC-TAATAAACGC---ACGACTTAATGACTGATCAGACTTCAGTGTTTCACTAT-TATTTTAACATTGTTGATGAGT-------GAAGTCGAGCAAATTATATTGGTTAACAAACTCAAATAAAAAAACACGCAATTTTTTT----TTgac
gi|3 : gt-CTA-CCAG-TAGACACT-ATGAATATAGA-AAT-------CTC-AT-T-C-GAAAGGTTCT--GATCATTG-TATAGACTGAACAC-TGGCC-TGGGACAAAGTCATG-TTTGC-AAT--CAGCTGACA-TTGCATAAGC-TTCG----AG-------------CTTATA--------GTCAGT--CAA----TACC---GAGTCTTAGAGTTT----GGTACAA---GAATGA-TTGAA---ACAGT---TC---TATTGG-TAG--TTTA----TAATTTATCTTTGTTAA-TATTCATGGCGAGACT---------TT---GATTCTGCATGTC--GGCGGCAATCA-TTCCTT-CCCCCG-TGCG-C--AA----TGCGA----AGT--TCATTT-CA-CATACTGAACA-ACAA---ACAT--ACATTTCGC--C-T--TTG-GAC----------GATTA---GTCA--AAAACGGC--TACA------TCTCTATA-TAAGAATCTT-TAAGACC-------AAGTGAAGAATGATTT--GT--------T-----TCAGTTGCTTCACCAG---TAAGT--AAATTTCCGTTAA-----AAGACATCTCTCGATTCTCTGTCATGATCAGTCATCGACTAAC-AGC-AT--GCTGTATTCA------TAC-TCTAAA-----TCGT-T-AAAATGCT-TG-AATCA-ATAACAC--TAAAGGTGAAA--TCAAGCG-CTT--TG-CT-----GA-TTCAG-AT----CGGTCCACA-TAACAT----------TTGATTTAAAAATCG---GAATT---TT--T--ACCAA-------ACAAACT---G-AATTTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTTGGCTTTCT
gi|26 : ttaatgtcaacttttcagctcttca--CAA----T-CC---GAGTCTTAGAG---------TACAA---AA-TGA-TTGAA---A-AGT---TC---TATTGG-TAgccgtaaaaaatacggtgaaaacggaagagtaaacaggtc
gi|10 : TTT----TAA---CTTTT-----AATATTCATGGTGAGACT--------------GATTCTGCATGTT--GACGGCAATCATTTCTTT-TCCC-G-TGCG-C--AAC---TGCGA----AGT--TCA-CTTCA-CATACTGAACG-A-A---CATAC--CCCTTTCGC--CTT--T-G-GAC----------GATTA---GTCA--AAAAC
gi|21 : CTGCATGTC--GTTGACAATCA-GTCCTTCCCCC-GTTT-G-CAAA-----TGTGAATTTAGT--TCATT
gi|16 : cttagattctgcagaAATCA-TTCCTT-CCCCCA-TGCG-C--AAATTATGCAA----AGT--TCATTT-CG-CATACTGAACA-ATGA---ACAT--ACCTTTCAC--CTT--T-A-GAC----------GAT
gi|15 : CGA----AGT--TCATTT-CA-CATACTGAACA-ATAA---AAAT--ACCTTTCGC--C-T--TTG-GAC----------GATTG---GTCA--AAAACGGC--CATA------TTTCTCTA-TAAGAATCTT-TAAACCT-------AAGTGAA-A
gi|18 : AACA-ACAA---ACAT--ACCTTTTGC--C-T--T-TTGAC----------GATTATTAGTCA--AAAACGGC--CATA------TTT-TATA-TAAGAATCTT-TAATCCT-------A
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AGTTTTATCAATGCATTGAGTACAAGCACCAGTAAGTGCCACAATATGGCTCTTATTTAAGATTCAAGTCAGAAGGGGGGGGGGGGGGGGGTACCCCCCAATAAATTCTGAAA
Unaligned ( gi|17 ): AAAAAACTGAAACATTGTTCCGGAGGTTTTTTTACCCGTACCACCTACGACCGTTAAACATTTTTTTTGGGTCTTTCTAC
Unaligned ( gi|19 ): GCAGCATAATGTTTGAAGTTGGGGGGGGGGCGGGGGGGGGGGTCAGCTACATTATGAACGACACACTGGAAAT
Unaligned ( gi|24 ): TTTTTTGCCTTTCTACCGTAAGAAATACAGTGAAAACGGAAGAGTAAACAGGTCTGT
Unaligned ( gi|25 ): GACGACCGAAAACGTATTTTTGCCTTTCTACCGTAAGAAATACGGTGAAAACGG
Unaligned ( gi|29 ): CGTAAGAAATATGGCGGAAACGGAAGAGTAAACAGATCTGA
Unaligned ( gi|30 ): CGGTGAAAACGGAAGAGTAAACAGGTCTGTC
Unaligned ( gi|31 ): ACCTGTTTACCCTAAACAAAGCCTGTCA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222 333333333 2222222222 2222222222222 1111111111 111 222222222222 111 111 22 11 1 22222 1 11 11 111 111 1 22222222222 3333333 1 333333333 22222 22222 222 11 22222 888888888888888888888888888888888 22222 222 2 3333333333 11111 11 11 55555555555555555555555 2222 22222222 22 11 33333333333333333333333333333333333333333333 11 111111 111 11 2222222 1111 111 111 111 11 2222 222222222222222 2222 6666666666 11 2222 1111 222 111 1 2222222222 111 11 222222 11 22222 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 33333 66666666 3333333333 2222 2 1111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22 1 11 22 111
lowQualScore : 1 9 1 99 4 8 66 4 44 000000000 222222222 4 4 9999999999 4 4 4 4 2222222222222 4 4 9999999999 0 4 4 444 777 88888 66 888888888888 5 66 888 5 4 666 6 111 5 8 000 22 3 33 0 55555 3 0 3 0 33 22 8 3 2 0 7 444 111 33 0 99999999999 0 0 8 8 99 4444444 6 222222222 8 00000 0 0 00000 0 666 99 6 99999 11 88888 888888888888888888888888888888888 44444 8 0 222 0 1 3 3 1111111111 44444 0 66 44 99999999999999999999999 0000 8 44444444 88 22 1 8 8 11 8 66666666666666666666666666666666666666666666 99 999999 444 8 66 3 0000000 7777 8 8 444 8 444 444 8 33 1111 999999999999999 2 1111 5555555555 11 1 5 5555 6 2222 77 6 99 1 000 77 77 000 7 77 777 5555555555 111 99 11 333333 8 8 11 00000 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 66666 3 0 22222222 3333 4444444444 0 8888 3 1 7 5555 22 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 22 6 4 7 3 6 2 2 33 66 666
lowQualScore : . . . .. . . .. . .. ......... ......... . . .......... . . . . ............. . . .......... . . . ... ... ..... .. ............ . .. ... . . ... . ... . . ... .. . .. . ..... . . . . .. .. . . . . . ... ... .. . ........... . . . . .. ....... . ......... . ..... . . ..... . ... .. . ..... .. ..... ................................. ..... . . ... . . . . .......... ..... . .. .. ....................... .... . ........ .. .. . . . .. . ............................................ .. ...... ... . .. . ....... .... . . ... . ... ... . .. .... ............... . .... .......... .. . . .... . .... .. . .. . ... .. .. ... . .. ... .......... ... .. .. ...... . . .. ..... . ..................................................................................................... . ..... . . ........ .... .......... . .... . . . .... .. ............................................................................................................................ . .. . . . . . . . .. .. ...
lowQualScore : 0 4 1 44 0 9 77 4 88 000000000 000000000 0 4 4444444444 4 4 4 4 6666666666666 4 4 4444444444 1 0 0 444 888 99999 99 555555555555 0 99 666 7 3 000 7 000 6 0 444 00 8 88 0 22222 2 0 2 8 88 88 8 2 5 8 0 222 000 55 0 88888888888 8 2 0 0 00 0000000 0 000000000 8 00000 8 8 00000 8 222 22 7 33333 88 00000 000000000000000000000000000000000 00000 0 8 000 0 0 2 5 0000000000 44444 8 22 44 00000000000000000000000 0000 0 22222222 88 22 0 0 0 00 0 55555555555555555555555555555555555555555555 00 000000 000 0 22 2 8888888 2222 0 0 000 0 000 000 0 22 2222 222222222222222 0 2222 0000000000 00 0 2 8888 7 1111 99 7 22 7 000 99 99 000 1 99 333 0000000000 777 22 00 000000 0 0 00 00000 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 33333 7 7 77777777 7777 7777777777 7 3333 3 0 3 3333 00 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 77 7 7 3 3 7 2 5 00 00 222
consensus : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATACGA-C----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG--AG-AATAT----NCTATTTTTT-GTAATA--CGTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTA---------TTAGTTTAGACTA-----GACAGACTGAA-----AAGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCA-GGGACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCATT------GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTTA---A-TATTCATGGTG----AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGCAA----T-GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTC---GCCTT--T-G-GAC----------GATTA---GTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATG--TT--------ATTGTTT-C-TCAGTTGATTCACCAG--TTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAACGC---GCGGCTT--TG-CTGA-TCAGACTTCAG------ACCGTCCACATTAACATT---------T-------AAAATCG---GAATT-T-TTG-TTAAC-AA--CAAA-AAAAAAN---G-AATTTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTTGN--CTTTCT
Reference ( family-3492 ) : NCTGTTNACCCTCAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATACNA-C----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---AGAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG--AG-AATAT----ACTATTTTTT-GTAATA--TGTATGTCCAATGATCTAAGATTGGAACG-A-TCNA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-NTG-------AAAGTAA-CTTA---------TCANTTTAGACTA-----GACAGACTGAA-----AAGACAGGTAAAATGTTGGACAAGGTTACACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTTACA-TAA-ANCATTTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATNTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCANGGGACAAATNCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA--------GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACC-ATCTTTG---A-TATTCGTGGTG----AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGCAA--T-T-GCGA----AGTTC--ATTT-CA--CATACTGAACAACAA---ACAT--A--CCTTTC---GCC-T--T-G-GAC----------GATTA---GTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGATTTTCGTAACGATTATTTGCGTCANTTGNTTCACCAGCCTTGAGTCCAAATTTCNGTCAAGAAAGNAGACATCTCTCGATTCTCTNCCGCGATCAGTCATCGACTAGCAAGCAATTAGCTGCATCCAAAGAACNACANCNNAAACTGCTCNTATAAAAATGCTATGTAATCAGATAANACTTTNNANGNNAAACGCCAAGCGACTTAATGACTGA-TCAGACTTCAGTGTTTCACNGTCCACNTTAACATTGTTGATGAGTTGATTTAGAAGTCGAGCGAATTATATTGGTTAACNAACTCAAATANAAANNCACGCAATTTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTTGG--CTTTCT
gi|1 : CTGTTTACCT--AACGAAGC-TGCCAGTAAGATTTTCTTG-AA-TTTTA-GA-GTTT--GTCA---------GTACA---------A-TAACCA-GCGAGTG--------GCTC-A-CTAATACCA-C----A---AA-TATTTTA--TC----------GGAGGGAGGG-GGGTGTCCC---CA---GGAAATTTTAAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TTA---TT-TAGATT-G-ACT-AGAC-A-ACTGAGAATGACAGGTAAAATGTTGTACCTAGGTTTTACACATTTTCAATGAA-TCTG--AG-AATAT----TCTATTTTTTTGTAATACATGTATGTCCAATGATCTAAGATTG--ATG-A-TCAAAGTC------ATT-TTCTTGGT-CCA-AGGAAATCTTGAAATAATACA-TTG-------AAGATAA-CTTA---------TTATCTTAGACTA-----G-CAGACTGAA-----A-GACAGGTAAAATGTTGGACTAGGTTTCACACAATTAATGCATGAACATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATTCAGTGATTTCACACTAACAGCATGTTAA---TGGT-C-CTAC-AG-TAGAC-CT-CTGAATCTAAAA---------CTC-GGT-CTGA-----TCTGA----CATCGCTAT---CT-AAGAC-TGGCCAGGGGACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---CATTGCATTAGT-CGGTCACTATGCCTTGCATTC-----GTCGGT--CAA----T-CC---GAGT-CT-AGAGCTT----G-TACAG---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAA---ATTTT-----A-TATTCATGATG----AGAGTCAGAGATGTCGATTCTGCATGTC--AACGGCAATCATTCCTTCCCC-GTG-GCA-----T-GCGA----AGTTC--ATTTTCA--CATACTGAACAA-AACCCACAT--A--CCTTTC---ACC-T--T-G-GAC----------GATTA---GTCAA--AAACGGC--CATAT------TTCTAT-TTAAAAATCTT-TAAAC--CTAT-----GTGAA-AAT-------------ATTGTTT-C-TCAG-TGATT-ATCAG--TTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCC---ATC------CGACTAGC-AGC-AT--GCTGGATTCA------TACATCTCAA-----TCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTTGCGTTAAATAC------GCTT--TG-CTAA-TC-GA-TTCAG------ATCGATCACATTAACATT-----------------AAAATCG---GAAT--TCTTG--TA-------CAAAAAAAAAAG-----AATTTTTTT----TTTTA-----TACCGTAATTTTACGCA-CGACGA-CG-TACAAGT-TTTTTTAC--CTTTCT
gi|10 : aTTT----TAACT----TTTA---A-TATTCATGGTG----AGACT----------GATTCTGCATGTT--GACGGCAATCATTTCTTTTCCCGTGCGCAA--C-T-GCGA----AGTTC--ACTT-CA--CATACTG---AACGA---ACAT--ACCCCTTTC---GCCTT--T-G-GAC----------GATTA---GTCAA--AAAC
gi|11 : -CCC-AAGAAATTTTGAAATAATATA-GT---------ACCTAACCTTATTAGACAACTCAGTTTAGACTA-----GACAAACTGAAATGATAAGACAGGTAAAATGTTGGACAAGGTT--ACACATTT--TCAATGAA-ATC--T--GAGA
gi|12 : gttgCTGTTTAACCTAAACGAACACTGTCAGTAAGATTTTCC-G-A
gi|12 : ac-TGTCA---------GTAAG---------A-TTTTC---CGA-TG---------C-C-A-C-AATACGA-C----A---CA-TATTCAA-GTC----------GATGGG-GGG-tgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|12 : acctgtttaacctaaacgaacacTTGGACTT-GGTT--ACACATTTTCAATGAAATCttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|13 : acctgtttaacctaaacgaacactgtcagtaagattttccgatgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtA-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCAAGTGAGTG---------C-C-A-C-AATACGA-C----AT--AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGGGGGGGGCA---ATACATTTTGAAA-AA--CAC-AATG-------AAAGTAAC-CTTA--
gi|14 : A-GTTT-TATCAATGCATTGAGTACA---------A-GCACCA-GTAAGTG---------C-C-A-C-AATATGG-CTCTTATTTAA-GATTCAA-GTCAGAAGGGGGGGGGGGG-GGG-GGTACCCCC---CA---ATAAATTCTGAAAa
gi|15 : CGA----AGTTC--ATTT-CA--CATACTGAACAATAA---AAAT--A--CCTTTC---GCC-T--TTG-GAC----------GATTG---GTCAA--AAACGGC--CATAT------TTCTCT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-A
gi|16 : AATCATTCCTTCCCCCATGCGCAAATTAT-GCAA----AGTTC--ATTT-CG--CATACTGAACAATGA---ACAT--A--CCTTTC---ACCTT--T-A-GAC----------GAT
gi|17 : TTGTTCCGGAGGTT--TTTTTACC----CGT-AC-CACCTACGACCGTTAAACATTTTTTTTGGGTCTTTCT
gi|18 : aaaaaactgaaacaAACAACAA---ACAT--A--CCTTTT---GCC-T--T-TTGAC----------GATTATTAGTCAA--AAACGGC--CATAT------TT-TAT-ATAAGAATCTT-TAATC--CTAA-----ac
gi|2 : TTTTACACTAA-ACCATAACAA---CA-T-G-CCAC-AA----ATACT---GAAC----AA---------TTCTGGTGC-G---GATCTTGAA---CATCA-TAT---CT-A-GACATGGCCA--GGACAAATGCAT--TTCGCGAAT--CAGCTGACAATTGCATA-AAGAC----------T-ATT-------ATCT-GCAATGTTAGCGTCGGTACCAAAATAC-CCAAAGAATAC--AGAGCTTTGAAG--ACAAAAAGA-TGA-TTGAAGAAA-AGTATCTCATATATTGGATAGTATGTTATGGTAACC-ATCTTTA---AATATGCGAGATAGAGTAGACTATCT----TTGATTCT-CATGTATAAACAGCAATCATTC-TTCCCGC-TGGACAA--T-TCGCGA----AGTTCTCATTT-CGAGCATATAGAACACCAACACACATCAA--CCCTACACAGCG-TGAT-G-GATAGAACTATAAGATTT---TTCAACAAAACTGCTTCAAATGGACTTTTCAATTGTACGAAACTTGTAAACATTTAATTCATGTAAC-AATA--TTTCGTAACGATTATTTGCGTCA-TTGATTCA---GCCTTGAATCCAA---TCAGTCAAGAAAGTAAA-----------TTTCTCCTGC---------TCGACTAGCAAGCAATTAGCTGCATCCAAAGAACGACAATACAAACTGCTCTTATAAAAATGTTATGTAATCAGATAAAACTTTTC-TAATAAACGC---ACGACTTAATGACTGA-TCAGACTTCAGTGTTTCACTAT-TATTTTAACATTGTTGATGAGT-------GAAGTCGAGCAAATTATATTGGTTAACAAACTCAAATAAAAAAACACGCAATTTTTT
gi|20 : gtGG-GGG-GGGT---CC---CA---CTAAATTTTAAAATAT--TAC-AATG-------AAAGTAGC-CTTA--TCAG--TT-TGGACT-A-Attt
gi|21 : CTGCATGTC--GTTGACAATCAGTCCTTCCCCCGTTTGCAA--A-T-GTGAATTTAGTTC--ATTacaaatgcaaa
gi|22 : cttagattctgcagaCTGTTTACCCAAAACGAAGCCTGTCAGTAAGAGTTCCC-A-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-T
gi|23 : gcTTT--TCAATGAA-ATC--T--GAGAA--TA-----TATT--------A-TTT--------------------TTTGTAATATG--TAACCTTT-GAACGAT
gi|25 : GACGACCGA-AAACGTA-TTTTTGC--CTTTCTtgac
gi|26 : --CAA----T-CC---GAGT-CTTAGAG---------TACAA---AA-TGA-TTGAA---A-AGT---TC---TATTGG-TAaccgtaagaaatacggtgaaaacgg
gi|27 : CTGTTAACCCTCAATGAAGCCTGTCAGTAAGATTATCT-G-AA-T
gi|28 : gacCTGTTAACCCTCAATCAAGC-TGCCAGTAAGATTCTCT-G-AA-TTTT
gi|3 : -CTACCAG-TAGACACT-ATGAATATAGAAAT-------CTC-ATT-C-GAAAGGTTCTGAT---CATTG-TATAGACTGAACAC-TGGCC-TGGGACAAAGTCATG-TTTGC-AAT--CAGCTGACA-TTGCATAAG---C----------TTCGA-------GCTT-ATA--------GTCAGT--CAA----TACC---GAGT-CTTAGAGTTT----GGTACAA---GAATGA-TTGAA---ACAGT---TC---TATTGG-TAG--TTTA----TAATTTATCTTTGTTAA-TATTCATGGCG----AGACT--------TTGATTCTGCATGTC--GGCGGCAATCATTCCTTCCCCCGTGCGCAA----T-GCGA----AGTTC--ATTT-CA--CATACTGAACAACAA---ACAT--A--CATTTC---GCCTT--T-G-GAC----------GATTA---GTCAA--AAACGGC--TACAT------CTCTAT-ATAAGAATCTT-TAAGA--CCAA-----GTGAAGAATGATTT--------GTT-------TCAGTTGCTTCACCAG---TAAGT--AAATTTCCGTTAA-----AAGACATCTCTCGATTCTCTGTCATGATCAGTCATCGACTAAC-AGC-AT--GCTGTATTC--------ATACTCTAAATCGTT------AAAATGCT-TG-AATCA-ATAACAC--TAAAGGTGAAA--TCAAGCG-CTT--TG-CTGATTCAGAT------------CGGTCCACA-TAACAT----------TTGATTTAAAAATCG---GAATT-------TTTACCAA-------ACAAACT---G-AATTTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTTGG--CTTTCT
gi|31 : ttaatgtcaacttttcagctcttcaCTGTTTACCCTAAACAAAGCCTGTCAgccgtaaaaaatacggtgaaaacggaagagtaaacaggtc
gi|4 : acCTGTTA--CCT-AACGA-GCCTGTCAGTAAGATTTTCCCG-AA-TTTTA-GA-GTTT-TGTCA---------GTAC----------A-TCACCA-GCGAG-G--------TC-C-ACC-AATAC-A-C----A---AATTATTTAA-ATC----------GGTAGG-AGG-GGG-GTCCC---CA---AGAAATTTTAAAATAATTTAC-ATTG-------AA---AACGCTTA--TTAG--GTATAGACT-G-ACTGAGAC-AGACTG-AAA-GACAGATAAAATGTTGGACGTAGGTT--ACACATTTTCAATGAAATCTG--AG-AATAT----TCTATTTTTT-GTAATA--CAGATGT-CAATGATTTAAGATTGGAATG-A-T-AA-GTC------ATTCTTTTTGGTACCC-AAGAAATCTTGAAATAATACATTTG-------AAAGTAC-CTTA---------TTA-TTTAGACTA-----GACAGAATG-A-----AATACAGGTAAAATGTTGGACAA------------TT--TCAATGAA-ATC--T--GAGAAC-TAT----TACT--------A--TT--------------------TTTGTAATATG--T--CCCTTGCAACGATCCAGTAA-TTCA-A-TCA-AGCACTTTAA---TG-T-CACTAC-CA-TAGACACTATTGAATC-AGAA-----------C-ACT-C-----GGTTCTGATCGACATCG-TAT---CT--AGAC-TGGCCA-GGGACAAATGCATGATTCCC-AATGGCAGCTGACA-TTGCATA-G----------------CAA---------TT-GCATT------ATCGGTC-CAA----T-CT---GAGT-CT--GAGCTT----G-TACAA----A-TGACTTGAA---A-AGT---TC---TATTGG-TAG-A
gi|5 : gacACTTTCAATGAAGCCTGTCAGTAAGATTTGCAGAATTTTTC-G-AGTT--TGTCAGTACAATCACCAGAGAGTGCCACATACTCAA-GTCGGGAAGATCC---------CCC-ATGAAATTTTGGAATAATACA-CTGTACATCAAAAGTAA-CCTA---------TCAGTTTAGACTACACTAGACAGACTGAA-----AAGACAAGGAAATTAATGGACAAGGTTACACACATTT--TCAATGAA-ATC--TGAGAGAATATA-----TACTTTTGTCCAATTTTTTTTTTTTTTTTTTTTGCTTTTTGCAAAATGTCT--CCTTT-CAATGATCCAGTGATGTTA-A-TAACAAC-TTTTGAGCTCT-TCC-CTAC-CATTAGACACT-CTGAATTTAGAATATGGAAACCTC-ATT-C-GAAAGGTTTTGAT---CATCG-TAT-------AGAC-------AAGGACAAATTCTTG-TTCAA-AAT--CAGCTGAAA-TTGCATA-G---C----------T-
gi|6 : gacccgtttCTGTTTACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAAC---------GC-C-A-C------------------AA-TATTTAA-GTC----------GGGGGG-G-----------C---CA---AGAAATTTTGAAATAA--TACTG-TA-------ACAGTAAC-CTTA--TTAG--TT-TATTTA-G-ACT-AGAC----------A-GACGTGTAAAATGTTGGAC-TAGGTT--ACACATTTTCAATGAAATCAA--AG-AGTAT----ACTA-TTTTT-GTACTA--TGT---TCC------CT----TT-GAACA-A-TCCA-GTC------AT--TTTTTGAT-CCCTAAGAAATTTTGAAATAATACA-TTGA------AAAGTAACCTTA---------TTAGTTTAGATTA-----GACAGACTGAA-----AAGACGGGTAAAATGTTGGACAAGGT---ACACATTT--TCAATGAA-ATCAAT--TAGAAT-TAGAATGTACT--------A--TT--------------------TTTGTAATATGA-C--CCTTT-CAACGATCCAGTGATTTCAAA-Tt
gi|7 : acGATTTGCA-G-AA-TTTTTCGA-GTTT--GTCA---------GCACA---------A-TCACCA-GAGAGT---------GC-C-A-C-AATATGG-C----A---CA-TACTCAA-GTC---------------T-GGA-AGAT-CCCC---CA---TGAAATTTTGGAATAA--TAC-ACTGTACATCAAAAGTAAC-C-TA--TCAG--TT-TACACTAG-ACT-AGAC-AGACTGAAAA-GACAGGGAAATTATTGGACA-AGGTTACACACATTTTCAATGAA
gi|8 : CTGTTAACCCTCAATTAAGCCTGTAAGTAAGATTATCT-G-AA-TTTTT--A-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCA-GTGAGTGCCACAAATGC-CCA-C-AATACGA-C----A---CA-TATCTAA-GTG----------GGGGGG-GGG-GGGTGTCCC---CA---ATAAATCTTGAAACAT--TGCAA-TG-------AAAGTAAC-CTTA--TCAG--TT-TA-----G-ACT-AGAC-AAA
gi|9 : agacATTTTCA-GCAA-TTTCT-GAAGTTTCTGTTAA--------GTACA---------GGTTATCA-GTGAGTG--------TC-A-G-C-AATACTGGC----A------CACTTAACATC----------AGGAGG-AGGCGGGCATCCC---CCCTTAAAAGTTATAAAATAA----C-T-TT-------AAAATA---CTTAAATCATCTTT-TAGACT-ACACT-AGACCAGACTGAAAA-GACGG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): GCAGCATAATGTTTGAAGTTGGGGGGGGGGCGGGGGGGGGGGTCAGCTACATTATGAACGACACACTGGAAAT
Unaligned ( gi|24 ): TTTTTTGCCTTTCTACCGTAAGAAATACAGTGAAAACGGAAGAGTAAACAGGTCTGT
Unaligned ( gi|29 ): CGTAAGAAATATGGCGGAAACGGAAGAGTAAACAGATCTGA
Unaligned ( gi|30 ): CGGTGAAAACGGAAGAGTAAACAGGTCTGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222222222 333333333 2222222222 111111111 1111111111 111 222222222222 111 111 22 22222 11 1 111111 111 111 1 22222222222 3333333 3333333333 22222 222222 333 11 22222 888888888888888888888888888888888 22222 1 3333333333 11111 11 11 55555555555555555555555 2222 22222222 11 11111111111111111111111111111111111111111111 11 111111 111 11 2222222 1111 111 111 111 11 2222 2222 2222 1 111 1 6666666666 11 2222222 1111 222 22222222222222 11 222222 11 22222 1 6666666666666 22222222 1 11 9999999999999999999999999999999999999999 1 2222 5555555555 2222222222 1 1 1 111 3333333 11 1 333333 4444444444444 888888888888888888888888888888888888888888888888 11 111 11 222 1 11 11 11
lowQualScore : 1 1 1 99 4 8 66 4 44 000000000 222222222 4 4 9999999999 4 4 4 4 55 999999999 4 4 9999999999 0 4 4 444 777 777 1 66 888888888888 5 66 888 5 4 666 6 111 5 8 000 22 3 55555 1 33 3 0 3 0 777777 8 3 2 0 7 444 111 2 0 99999999999 0 0 8 8 8 4444444 0 0 7777777777 00000 0 0 000000 111 99 6 99999 11 88888 888888888888888888888888888888888 44444 8 22 2 8 5 0 3 1 1111111111 44444 0 66 33 99999999999999999999999 0000 8 44444444 8 8 0 8 8 11 8 33333333333333333333333333333333333333333333 99 999999 444 8 66 3 0000000 7777 8 8 444 8 444 444 8 33 1111 0000 0 0000 0 777 1 0 5555555555 11 1 5 6 1111111 2222 77 6 999 1 000 77 77 77 77 55555555555555 99 11 333333 8 8 11 00000 0 5555555555555 77777777 6 3 7 7 88 7 7777777777777777777777777777777777777777 3 2222 1 5555555555 1 1 5555555555 3 3 3 7 999 3333333 88 3 333333 5555555555555 7 7 222222222222222222222222222222222222222222222222 33 44 777 33 6 888 6 3 7 3 6 2 33 99 33 1
lowQualScore : . . . .. . . .. . .. ......... ......... . . .......... . . . . .. ......... . . .......... . . . ... ... ... . .. ............ . .. ... . . ... . ... . . ... .. . ..... . .. . . . . ...... . . . . . ... ... . . ........... . . . . . ....... . . .......... ..... . . ...... ... .. . ..... .. ..... ................................. ..... . .. . . . . . . .......... ..... . .. .. ....................... .... . ........ . . . . . .. . ............................................ .. ...... ... . .. . ....... .... . . ... . ... ... . .. .... .... . .... . ... . . .......... .. . . . ....... .... .. . ... . ... .. .. .. .. .............. .. .. ...... . . .. ..... . ............. ........ . . . . .. . ........................................ . .... . .......... . . .......... . . . . ... ....... .. . ...... ............. . . ................................................ .. .. ... .. . ... . . . . . . .. .. .. .
lowQualScore : 0 7 1 44 0 9 77 4 88 000000000 000000000 0 4 4444444444 4 4 4 4 66 888888888 4 4 4444444444 1 0 0 444 888 888 0 99 555555555555 0 99 666 7 3 000 7 000 6 0 444 00 8 00000 0 88 2 0 2 8 555555 8 2 5 8 0 222 000 5 0 88888888888 8 2 0 0 0 0000000 8 8 0000000000 00000 8 8 888888 666 22 7 33333 88 00000 000000000000000000000000000000000 00000 0 22 5 8 0 2 2 0 0000000000 44444 8 22 88 00000000000000000000000 0000 0 22222222 0 0 6 0 0 00 0 22222222222222222222222222222222222222222222 00 000000 000 0 22 2 8888888 2222 0 0 000 0 000 000 0 22 2222 5555 2 8888 0 555 2 0 0000000000 00 0 2 7 0000000 1111 99 7 888 7 000 99 99 99 99 00000000000000 22 00 000000 0 0 00 00000 0 3333333333333 33333333 7 3 3 3 33 3 0000000000000000000000000000000000000000 3 7777 0 0000000000 0 0 7777777777 3 3 3 3 333 0000000 33 3 333333 7777777777777 3 3 777777777777777777777777777777777777777777777777 88 00 555 88 7 000 7 7 3 3 7 5 00 55 88 0
consensus : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATG-T--------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGCA-GCA--T-GCTGNATTCA-A-------CANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGCGC-GCTT--TG-CTGATC-GA-TTCAG------ATC-GTCCACATTAACATT---------T------AAAATCG---GAATT---TTTGT-----A---CAA--AAAAAANCG---AAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
Reference ( family-3492 ) : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGTG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGTT--------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGCA-GCA--T-GCTGNATTCA-A-------CANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGCGCGGCTT--TG-CTGATCAGACTTCAG------ACC-GTCCACATTAACATT---------T------AAAATCG---GAATT---TTTGTTAACAA---CAA--AAAAAAANG---AAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GNCTTTCT
gi|1 : CTGTTTACCT--AACGAAGC-TGCCAGTAAGATTTTCTTG-AA-TTTTA-GA-GTTT--GTCA---------GTACA---------A-TAACCA-GCGAGTG--------GCTC-A-CTAATAC-CAC----A---AA-TATTTTA--TC----------GGAGGGAGGG-GGGTGTCCC---CA---GGAAATTTTAAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TTA---TT-TAGATT-G-ACT-AGAC-A-ACTGAGAATGACAGGTAAAATGTTGTACCTAGGTTTTACACATTTTCAATGAA-TCTG-----AGAATATTCT--ATTTTTTTGTAATACATGTATGTCCAATGATCTAAGATTG--ATG-A-TCAAAGTC------ATT-TTCTTGGT-CCA-AGGAAATCTTGAAATAATACA-TTG-------AAGATAAC-TTATTAT---------CTTAGACTA-----G-CAGACTGAAA------GACAGGTAAAATGTTGGACTAGGTTTCACACAATTAATGCATGAACATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATTCAGTGATTTCACACTAACAGCATGTTAA---TGGT-C-CTAC-AG-TAGAC-CT-CTGAATCTAAAA---------CTC-GGT-CTGA-----TCTGA----CATCGCTAT---CT-AAGAC-TGGCCAGGGGACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---CATTGCATTAGT-CGGTCACTATGCCTTGCA---TTC--GTCGGT--CAA----T-CC---GAGT-CT-AGAGCTT----G-TACAG---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAA---ATTTT-----A-TATTC---ATGATG-AGAGTCAGAGATGTCGATTCTGCATGTC--AACGGCAATCATTCCTTCCCC-GTG-GC-A-----T--GCGA----AGTTC--ATTTTCA--CATACTGAACAA-AACCCACAT--A--CCTTTCAC--CTT---GGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-TTAAAAATCTT-TAAAC--CTAT-----GTGAA-AA---T--------ATTGTTT-C-TCAG-TGATT-A-TCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGC--C-ATC------CGACTAGCA-GCA--T-GCTGGATTCATA-------CATCTCAA-----TCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTTGCGTTAAA-TAC---GCTT--TG-CTAATC-GA-TTCAG------ATC-GATCACATTAACA-T---------T------AAAATCG---GAATT---CTTGT-----A---CAA--AAAAAAAAG---AAT--TTTTTT----TTTTA-----TACCGTAATTTTACGCA-CGACGA-CG-TACAAGT-TTTTTT--ACCTTTCT
gi|10 : aTTT----TAACT----TTT---AA-TATTC---ATGGTG-AGACT----------GATTCTGCATGTT--GACGGCAATCATTTCTTTTCCCGTGCGC-AAC---T--GCGA----AGTTC--ACTT-CA--CATACTG---AACGA---ACAT--ACCCCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAAC
gi|11 : -CCC-AAGAAATTTTGAAATAATATA-GT---------ACCTAACCTTATTAGACAACTCAGTTTAGACTA-----GACAAACTGAAATGATAAGACAGGTAAAATGTTGGACAAGGTT--ACACATTT--TCAATGAA-ATC--T--GAGA
gi|12 : gttgCTGTTTAACCTAAACGAACACTGTCAGTAAGATTTTCC-G-A
gi|12 : ac-TGTCA---------GTAAG---------A-TTTTC---CGA-TG---------C-C-A-C-AATAC-GAC----A---CA-TATTCAA-GTC----------GATGGG-GGG-tgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|12 : acctgtttaacctaaacgaacacTTGGACTT-GGTT--ACACATTTTCAATGAAATCttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|13 : acctgtttaacctaaacgaacactgtcagtaagattttccgatgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtA-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCAAGTGAGTG---------C-C-A-C-AATAC-GAC----AT--AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGGGGGGGGCA---ATACATTTTGAAA-AA--CAC-AATG-------AAAGTAAC-CTTA--
gi|14 : A-GTTT-TATCAATGCATTGAGTACA---------A-GCACCA-GTAAGTG---------C-C-A-C-AATAT-GGCTCTTATTTAA-GATTCAA-GTCAGAAGGGGGGGGGGGG-GGG-GGTACCCCC---CA---ATAAATTCTGAAAa
gi|15 : CGA----AGTTC--ATTT-CA--CATACTGAACAATAA---AAAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTGGTCAA--AAACGGC--CATAT------TTCTCT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-A
gi|16 : AATCATTCCTTCCCCCATGCGC-AAATTAT--GCAA----AGTTC--ATTT-CG--CATACTGAACAATGA---ACAT--A--CCTTTCAC--CTT--TAGAC----------G---AT
gi|17 : --AAAAAACTG---AAACATTGTTCCGGAGGTT--TTTTTACC----CGT-AC-CACCTACGACCGTTAAACATTTTTTTTGGGTCTTTCT
gi|18 : AACAACAA---ACAT--A--CCTTTTGC--CTT--TTGAC----------GATTATTAGTCAA--AAACGGC--CATAT------TT-TAT-ATAAGAATCTT-TAATC--CTAA-----ac
gi|2 : TTTTACACTAA-ACCATAACAA---CA-T-G-CCAC-AA----ATACT---GAAC----AA---------TTCTGGTGC-G---GATCTTGAA---CATCA-TAT---CT-A-GACATGGCCAGG--ACAAATGCAT--TTCGCGAAT--CAGCTGACAATTGCATA-AAGAC----------T-ATT-------ATCT-GCAATGTTAGCGTCGGTACCAAAATAC-CCAAAGAATAC--AGAGCTTTGAAG--ACAAAAAGA-TGA-TTGAAGAAA-AGTATCTCATATATTGGATAGTATGTTATGGTAACC-ATCTTT---AAATATGCGAGATAGAGTAGACTATCT----TTGATTCT-CATGTATAAACAGCAATCATTC-TTCCCGC-TGGAC-AA----TTCGCGA----AGTTCTCATTT-CGAGCATATAGAACACCAACACACATCAA--CCCTACACAGCGTGATGGATAGAACTATAAG---ATTTTTCAACAAAACTGCTTCAAATGGACTTTTCAATTGTACGAAACTTGTAAACATTTAATTCATGTAAC-AATATTTCGTAACGATTATTTGCGTCA-TTGATTCAGCC--TTGAATCCAA---TCAGTCAAGAAAGTAAAT----------T-TCTCCTGC---------TCGACTAGCAAGCAATTAGCTGCATCCA-AAGAACGACAATACAAACTGCTCTTATAAAAATGTTATGTAATCAGATAAAACTTTTC-TAATAAA-CGCACGACTTAATGACTGATCAGACTTCAGTGTTTCACT-AT-TATTTTAACATTGTTGATGAGT------GAAGTCGAGCAAATTATATTGGTTAACAAACTCAAATAAAAAAACACGCAAT--TTTTT
gi|20 : gtGG-GGG-GGGT---CC---CA---CTAAATTTTAAAATAT--TAC-AATG-------AAAGTAGC-CTTA--TCAG--TT-TGGACT-A-Attt
gi|21 : CTGCATGTC--GTTGACAATCAGTCCTTCCCCCGTTTGCAAA----T--GTGAATTTAGTTC--ATTacaaatgcaaa
gi|22 : cttagattctgcagaCTGTTTACCCAAAACGAAGCCTGTCAGTAAGAGTTCCC-A-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-T
gi|23 : gcTTT--TCAATGAA-ATC--T--GAGAA--TA-----TATT--------A-TTT--------------------TTTGTAATATG--TAACCTTT-GAACGAT
gi|25 : GACGACCGA-AAACGTA-TTTTT--GCCTTTCTtgac
gi|26 : --CAA----T-CC---GAGT-CTTAGAG---------TACAA---AA-TGA-TTGAA---A-AGT---TC---TATTGG-TAaccgtaagaaatacggtgaaaacgg
gi|27 : CTGTTAACCCTCAATGAAGCCTGTCAGTAAGATTATCT-G-AA-T
gi|28 : gacCTGTTAACCCTCAATCAAGC-TGCCAGTAAGATTCTCT-G-AA-TTTT
gi|3 : -CTACCAG-TAGACACT-ATGAATATAGAAAT-------CTC-ATT-C-GAAAGGTTCTGAT---CATTG-TATAGACTGAACAC-TGGCCTGGG-ACAAAGTCATG-TTTGC-AAT--CAGCTGACA-TTGCATAAG---C----------TTCGA-------GCTT---A---TA---GTCAGT--CAA----TACC---GAGT-CTTAGAGTTT----GGTACAA---GAATGA-TTGAA---ACAGT---TC---TATTGG-TAG--TTTA----TAATTTATCTTTGTTAA-TATTC---ATGGCG-AGACT--------TTGATTCTGCATGTC--GGCGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CA--CATACTGAACAACAA---ACAT--A--CATTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--TACAT------CTCTAT-ATAAGAATCTT-TAAGA--CCAA-----GTGAAGAATGAT---------TTGTTT-C---AGTTGCTTCA-CCAGT-AAGT--AAATTTCCGTTAA-----AAGACATCTCTCGATTCTCTGTCATGATCAGTCATCGACTAACA-GCA--T-GCTGTATTC--A-------TACTCTAAATCGTT------AAAATGCT-TG-AATCA-ATAACAC--TAAAGGTGAAATCAAGC-GCTT--TG-CTGA------TTCAG------ATCGGTCCACA-TAACATT---------TGATTTAAAAATCG---GAATT---TTT-------A---CCA--AACAAACTG---AAT--TTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTT--GGCTTTCT
gi|31 : ttaatgtcaacttttcagctcttcaCTGTTTACCCTAAACAAAGCCTGTCAgccgtaaaaaatacggtgaaaacggaagagtaaacaggtc
gi|4 : acCTGTTA--CCTAA-CGA-GCCTGTCAGTAAGATTTTCCCG-AA-TTTTA-GA-GTTT-TGTCA---------GTAC----------A-TCACCA-GCGAG-G--------TC-C-ACC-AATAC--AC----A---AATTATTTAA-ATC----------GGTAGG-AGG-GGG-GTCCC---CA---AGAAATTTTAAAATAATTTAC-ATTG-------AA---AACGCTTA--TTAG--GTATAGACT-G-ACTGAGAC-AGACTG-AAA-GACAGATAAAATGTTGGACGTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATTCT--ATTTTTT-GTAATAC--AGATGT-CAATGATTTAAGATTGGAATG-A-T-AA-GTC------ATTCTTTTTGGTACCC-AAGAAATCTTGAAATAATACATTTG-------AAAGT-ACCTTATTA----------TTTAGACTA-----GACAGAATG-AA-----ATACAGGTAAAATGTTGGACAA------------TT--TCAATGAA-ATC--T--GAGAAC-TAT----TACT--------A--TT--------------------TTTGTAATATG--T--CCCTTGCAACGATCCAGTAATT---CAATCA-AGCACTTTAA---TG-T-CACTAC-CA-TAGACACTATTGAATC-AGAA-----------C-ACT-C-----GGTTCTGATCGACATCG-TAT---CT--AGAC-TGGCCAGGG-ACAAATGCATGATTCCC-AATGGCAGCTGACA-TTGCATA-G----------------CAA---------TT-GCA---TT---ATCGGTC-CAA----T-CT---GAGT-CT--GAGCTT----G-TACAA----A-TGACTTGAA---A-AGT---TC---TATTGG-TAG-A
gi|5 : gacACTTTCAATGAAGCCTGTCAGTAAGATTTGCAGAATTTTTC-G-AGTTT--GTCAGTACAATCACCAGAGAGTGCCACATACTCAA-GTCGGGAAGATCC---------CCC-ATGAAATTTTGGAATAATACA-CTGTACATCAAAAGTAACCT-ATCAG---------TTTAGACTACACTAGACAGACTGAAA-----AGACAAGGAAATTAATGGACAAGGTTACACACATTT--TCAATGAA-ATC--TGAGAGAATATA-----TACTTTTGTCCAATTTTTTTTTTTTTTTTTTTTGCTTTTTGCAAAATGTCT--CCTTT-CAATGATCCAGTGATGTTA-A-TAACAAC-TTTTGAGCTCT-TCC-CTAC-CATTAGACACT-CTGAATTTAGAATATGGAAACCTC-ATT-C-GAAAGGTTTTGAT---CATCG-TAT-------AGA------CAAGG-ACAAATTCTTG-TTCAA-AAT--CAGCTGAAA-TTGCATA-G---C----------T-
gi|6 : gacccgtttCTGTTTACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAAC---------GC-C-A-C------------------AA-TATTTAA-GTC----------GGGGGG-G-----------C---CA---AGAAATTTTGAAATAA--TACTG-TA-------ACAGTAAC-CTTA--TTAG--TT-TATTTA-G-ACT-AGAC----------A-GACGTGTAAAATGTTGGAC-TAGGTT--ACACATTTTCAATGAAATCAA-----AGAGTATACT--A-TTTTT-GTACTAT--GT---TCC------CT----TT-GAACA-A-TCCA-GTC------AT--TTTTTGAT-CCCTAAGAAATTTTGAAATAATACA-TTGA------AAAGTAACCTTATTAG---------TTTAGATTA-----GACAGACTGAAA-----AGACGGGTAAAATGTTGGACAAGGT---ACACATTT--TCAATGAA-ATCAAT--TAGAAT-TAGAATGTACT--------A--TT--------------------TTTGTAATATGA-C--CCTTT-CAACGATCCAGTGATTTCAt
gi|7 : acGATTTGCA-G-AA-TTTTTCGA-GTTT--GTCA---------GCACA---------A-TCACCA-GAGAGT---------GC-C-A-C-AATAT-GGC----A---CA-TACTCAA-GTC---------------T-GGA-AGAT-CCCC---CA---TGAAATTTTGGAATAA--TAC-ACTGTACATCAAAAGTAAC-C-TA--TCAG--TT-TACACTAG-ACT-AGAC-AGACTGAAAA-GACAGGGAAATTATTGGACA-AGGTTACACACATTTTCAATGAAaat
gi|8 : CTGTTAACCCTCAATTAAGCCTGTAAGTAAGATTATCT-G-AA-TTTTT--A-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCA-GTGAGTGCCACAAATGC-CCA-C-AATAC-GAC----A---CA-TATCTAA-GTG----------GGGGGG-GGG-GGGTGTCCC---CA---ATAAATCTTGAAACAT--TGCAA-TG-------AAAGTAAC-CTTA--TCAG--TT-TA-----G-ACT-AGAC-AAA
gi|9 : agacATTTTCA-GCAA-TTTCT-GAAGTTTCTGTTAA--------GTACA---------GGTTATCA-GTGAGTG--------TC-A-G-C-AATACTGGC----A------CACTTAACATC----------AGGAGG-AGGCGGGCATCCC---CCCTTAAAAGTTATAAAATAA----C-T-TT-------AAAATA---CTTAAATCATCTTT-TAGACT-ACACT-AGACCAGACTGAAAA-GACGG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): GCAGCATAATGTTTGAAGTTGGGGGGGGGGCGGGGGGGGGGGTCAGCTACATTATGAACGACACACTGGAAAT
Unaligned ( gi|24 ): TTTTTTGCCTTTCTACCGTAAGAAATACAGTGAAAACGGAAGAGTAAACAGGTCTGT
Unaligned ( gi|29 ): CGTAAGAAATATGGCGGAAACGGAAGAGTAAACAGATCTGA
Unaligned ( gi|30 ): CGGTGAAAACGGAAGAGTAAACAGGTCTGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222222222 333333333 2222222222 111111111 1111111111 111 222222222222 111 111 22 22222 11 1 111111 111 111 1 22222222222 3333333 3333333333 22222 222222 333 11 22222 888888888888888888888888888888888 22222 1 3333333333 11111 11 11 55555555555555555555555 2222 22222222 11 11111111111111111111111111111111111111111111 11 111111 111 11 2222222 1111 111 111 111 11 2222 2222 2222 1 111 1 6666666666 11 2222222 1111 111 111 22222222222222 11 222222 11 22222 1 666666666666 22222222 1 11 9999999999999999999999999999999999999999 1 1 11 66666666 2222222222 1 1 1 111 22222 1 11 1 22222 1 1 1 1111 333333 11 11 11 222 1 11 11
lowQualScore : 1 1 1 99 4 8 66 4 44 000000000 222222222 4 4 9999999999 4 4 4 4 55 999999999 4 4 9999999999 0 4 4 444 777 777 1 66 888888888888 5 66 888 5 4 666 6 111 5 8 000 22 3 55555 1 33 3 0 3 0 777777 8 3 2 0 7 444 111 2 0 99999999999 0 0 8 8 8 4444444 0 0 7777777777 00000 0 0 000000 111 99 6 99999 11 88888 888888888888888888888888888888888 44444 8 22 2 8 5 0 3 1 1111111111 44444 0 66 33 99999999999999999999999 0000 8 44444444 8 8 0 8 8 11 8 33333333333333333333333333333333333333333333 99 999999 444 8 66 3 0000000 7777 8 8 444 8 444 444 8 33 1111 0000 0 0000 0 777 4 0 5555555555 11 1 1 5 6 1111111 2222 77 6 999 000 1 000 77 77 77 77 55555555555555 99 11 333333 8 8 11 00000 0 444444444444 77777777 6 3 7 7 88 7 7777777777777777777777777777777777777777 3 3 88 1 44444444 1 1 5555555555 3 3 3 7 999 88888 3 88 3 11111 3 7 3 0 3 7 2222 888888 88 3 00 88 6 888 6 3 7 3 6 2 33 9 3 33 0
lowQualScore : . . . .. . . .. . .. ......... ......... . . .......... . . . . .. ......... . . .......... . . . ... ... ... . .. ............ . .. ... . . ... . ... . . ... .. . ..... . .. . . . . ...... . . . . . ... ... . . ........... . . . . . ....... . . .......... ..... . . ...... ... .. . ..... .. ..... ................................. ..... . .. . . . . . . .......... ..... . .. .. ....................... .... . ........ . . . . . .. . ............................................ .. ...... ... . .. . ....... .... . . ... . ... ... . .. .... .... . .... . ... . . .......... .. . . . . ....... .... .. . ... ... . ... .. .. .. .. .............. .. .. ...... . . .. ..... . ............ ........ . . . . .. . ........................................ . . .. . ........ . . .......... . . . . ... ..... . .. . ..... . . . . . . .... ...... .. . .. .. . ... . . . . . . .. . . .. .
lowQualScore : 0 7 1 44 0 9 77 4 88 000000000 000000000 0 4 4444444444 4 4 4 4 66 888888888 4 4 4444444444 1 0 0 444 888 888 0 99 555555555555 0 99 666 7 3 000 7 000 6 0 444 00 8 00000 0 88 2 0 2 8 555555 8 2 5 8 0 222 000 5 0 88888888888 8 2 0 0 0 0000000 8 8 0000000000 00000 8 8 888888 666 22 7 33333 88 00000 000000000000000000000000000000000 00000 0 22 5 8 0 2 2 0 0000000000 44444 8 22 88 00000000000000000000000 0000 0 22222222 0 0 6 0 0 00 0 22222222222222222222222222222222222222222222 00 000000 000 0 22 2 8888888 2222 0 0 000 0 000 000 0 22 2222 5555 2 8888 0 555 2 0 0000000000 00 0 0 2 7 0000000 1111 99 7 888 000 7 000 99 99 99 99 00000000000000 22 00 000000 0 0 00 00000 0 000000000000 33333333 7 3 3 3 33 3 0000000000000000000000000000000000000000 3 3 33 0 00000000 0 0 7777777777 3 3 3 3 333 00000 3 33 3 77777 3 3 3 7 3 3 7777 333333 00 0 00 33 7 000 7 7 3 3 7 5 00 8 2 88 2
consensus : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGT--TCATTT-C--GCATACTGAA---CAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCA--AAAACGGC--CATA------TTTCTA-TATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
Reference ( family-3492 ) : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGT--TCATTT-C--GCATACTGAA---CAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCA--AAAACGGC--CATA------TTTCTA-TATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGCGCG-CTT--TG-CTGATC-GA-TTCAGATC-GTCCAC-ATTAACATTT------AAAATCGGAATTTTTGTACAAAAAAAANCGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
gi|1 : CTGTTTACCT--AACGAAGC-TGCCAGTAAGATTTTCTTG-AA-TTTTA-GA-GTTT--GTCA---------GTACA---------A-TAACCA-GCGAGTG--------GCTC-A-CTAATAC-CAC----A---AA-TATTTTA--TC----------GGAGGGAGGG-GGGTGTCCC---CA---GGAAATTTTAAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TTA---TT-TAGATT-G-ACT-AGAC-A-ACTGAGAATGACAGGTAAAATGTTGTACCTAGGTTTTACACATTTTCAATGAA-TCTG-----AGAATATTCT--ATTTTTTTGTAATACATGTATGTCCAATGATCTAAGATTG--ATG-A-TCAAAGTC------ATT-TTCTTGGT-CCA-AGGAAATCTTGAAATAATACA-TTG-------AAGATAAC-TTATTAT---------CTTAGACTA-----G-CAGACTGAAA------GACAGGTAAAATGTTGGACTAGGTTTCACACAATTAATGCATGAACATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATTCAGTGATTTCACACTAACAGCATGTTAA---TGGT-C-CTAC-AG-TAGAC-CT-CTGAATCTAAAA---------CTC-GGT-CTGA-----TCTGA----CATCGCTAT---CT-AAGAC-TGGCCAGGGGACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---CATTGCATTAGT-CGGTCACTATGCCTTGCA---TTC--GTCGGT--CAA----T-CC---GAGT-CT-AGAGCTT----G-TACAG---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAA---ATTTT-----A-TATTC---ATGATG-AGAGTCAGAGATGTCGATTCTGCATGTC--AACGGCAATCATTCCTTCCCC-GTG-GC-A-----T--GCGA----AGT--TCATTTTC--ACATACTGAA---CAA-AACCCACAT--A--CCTTTCAC--CTT---GGAC----------G---ATTAGTCA--AAAACGGC--CATA------TTTCTA-TTTAAAAATCTT-TAAAC--CTAT-----GTGAA-AA--T---------ATTGTTT-C-TCAG-TGATT-A-TCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGC--C-ATC------CGACTAGC-AGC-AT--GCTGGATTCAT------ACATCTCAA-----TCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTTGCGTTAAA---TACG-CTT--TG-CTAATC-GA-TTCAGATC-GATCAC-ATTAACA-TT------AAAATCGGAATTCTTGTACAAAAAAAAAAGAAT--TTTTTT----TTTTA-----TACCGTAATTTTACGCA-CGACGA-CG-TACAAGT-TTTTTT--ACCTTTCT
gi|10 : aTTT----TAACT----TTT---AA-TATTC---ATGGTG-AGACT----------GATTCTGCATGTT--GACGGCAATCATTTCTTTTCCCGTGCGC-AAC---T--GCGA----AGT--TCACTT-C--ACATACTG------AACGA---ACAT--ACCCCTTTCGC--CTT--TGGAC----------G---ATTAGTCA--AAAAC
gi|11 : -CCC-AAGAAATTTTGAAATAATATA-GT---------ACCTAACCTTATTAGACAACTCAGTTTAGACTA-----GACAAACTGAAATGATAAGACAGGTAAAATGTTGGACAAGGTT--ACACATTT--TCAATGAA-ATC--T--GAGA
gi|12 : gttgCTGTTTAACCTAAACGAACACTGTCAGTAAGATTTTCC-G-A
gi|12 : ac-TGTCA---------GTAAG---------A-TTTTC---CGA-TG---------C-C-A-C-AATAC-GAC----A---CA-TATTCAA-GTC----------GATGGG-GGG-tgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|12 : acctgtttaacctaaacgaacacTTGGACTT-GGTT--ACACATTTTCAATGAAATCttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|13 : acctgtttaacctaaacgaacactgtcagtaagattttccgatgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtA-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCAAGTGAGTG---------C-C-A-C-AATAC-GAC----AT--AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGGGGGGGGCA---ATACATTTTGAAA-AA--CAC-AATG-------AAAGTAAC-CTTA--
gi|14 : A-GTTT-TATCAATGCATTGAGTACA---------A-GCACCA-GTAAGTG---------C-C-A-C-AATAT-GGCTCTTATTTAA-GATTCAA-GTCAGAAGGGGGGGGGGGG-GGG-GGTACCCCC---CA---ATAAATTCTGAAAa
gi|15 : CGA----AGT--TCATTT-C--ACATACTGAA---CAATAA---AAAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTGGTCA--AAAACGGC--CATA------TTTCTC-TATAAGAATCTT-TAAAC--CTAA-----GTGAA-A
gi|16 : AATCATTCCTTCCCCCATGCGC-AAATTAT--GCAA----AGT--TCATTT-C--GCATACTGAA---CAATGA---ACAT--A--CCTTTCAC--CTT--TAGAC----------G---AT
gi|17 : AAAAAACTGAAACATTGTTCCGGAGGTT--TTTTTACC----CGT-AC-CACCTACGACCGTTAAACATTTTTTTTGGGTCTTTCT
gi|18 : AA---CAACAA---ACAT--A--CCTTTTGC--CTT--TTGAC----------GATTATTAGTCA--AAAACGGC--CATA------TTT-TA-TATAAGAATCTT-TAATC--CTAA-----ac
gi|2 : TTTTACACTAA-ACCATAACAA---CA-T-G-CCAC-AA----ATACT---GAAC----AA---------TTCTGGTGC-G---GATCTTGAA---CATCA-TAT---CT-A-GACATGGCCAGG--ACAAATGCAT--TTCGCGAAT--CAGCTGACAATTGCATA-AAGAC----------T-ATT-------ATCT-GCAATGTTAGCGTCGGTACCAAAATAC-CCAAAGAATAC--AGAGCTTTGAAG--ACAAAAAGA-TGA-TTGAAGAAA-AGTATCTCATATATTGGATAGTATGTTATGGTAACC-ATCTTT---AAATATGCGAGATAGAGTAGACTATCT----TTGATTCT-CATGTATAAACAGCAATCATT-CTTCCCGC-TGGAC-AA----TTCGCGA----AGTTCTCATTT-CGAGCATATAGAACACCAACAC---ACATCAA--CCCTACACAGCGTGATGGATAGAACTATAAG---ATTTTTCAACAAAACTGCTTCAAATGGACTTTTCAATTGTACGAAACTTGTAAACATTTAATTCATGTAAC-AATATTTCGTAACGATTATTTGCGTCA-TTGATTCAGCC--TTGAATCCAA---TCAGTCAAGAAAGTAAA-----------TTTCTCCTG----C-----TCGACTAGCAAGCAATTAGCTGCATCCAAAGAACGACAATACAAACTGCTCTTATAAAAATGTTATGTAATCAGATAAAACTTTTC-TAATAAA-CGCACGACTTAATGACTGATCAGACTTCAG-TG-TTTCACTATTA--TTTT------AACATTG
gi|20 : gtGG-GGG-GGGT---CC---CA---CTAAATTTTAAAATAT--TAC-AATG-------AAAGTAGC-CTTA--TCAG--TT-TGGACT-A-Attgatgagtgaagtcgagcaaattatattggttaacaaactcaaataaaaaaacacgcaattttttttt
gi|21 : CTGCATGTC--GTTGACAATCAGTCCTTCCCCCGTTTGCAAA----T--GTGAATTTAGT--TCATTacaaatgcaaa
gi|22 : cttagattctgcagaCTGTTTACCCAAAACGAAGCCTGTCAGTAAGAGTTCCC-A-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-T
gi|23 : gcTTT--TCAATGAA-ATC--T--GAGAA--TA-----TATT--------A-TTT--------------------TTTGTAATATG--TAACCTTT-GAACGAT
gi|25 : GACGACCGA-AAACGTATTTT-T--GCCTTTCTtgac
gi|26 : --CAA----T-CC---GAGT-CTTAGAG---------TACAA---AA-TGA-TTGAA---A-AGT---TC---TATTGG-TAaccgtaagaaatacggtgaaaacgg
gi|27 : CTGTTAACCCTCAATGAAGCCTGTCAGTAAGATTATCT-G-AA-T
gi|28 : gacCTGTTAACCCTCAATCAAGC-TGCCAGTAAGATTCTCT-G-AA-TTTT
gi|3 : -CTACCAG-TAGACACT-ATGAATATAGAAAT-------CTC-ATT-C-GAAAGGTTCTGAT---CATTG-TATAGACTGAACAC-TGGCCTGGG-ACAAAGTCATG-TTTGC-AAT--CAGCTGACA-TTGCATAAG---C----------TTCGA-------GCTT---A---TA---GTCAGT--CAA----TACC---GAGT-CTTAGAGTTT----GGTACAA---GAATGA-TTGAA---ACAGT---TC---TATTGG-TAG--TTTA----TAATTTATCTTTGTTAA-TATTC---ATGGCG-AGACT--------TTGATTCTGCATGTC--GGCGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGT--TCATTT-C--ACATACTGAA---CAACAA---ACAT--A--CATTTCGC--CTT--TGGAC----------G---ATTAGTCA--AAAACGGC--TACA------TCTCTA-TATAAGAATCTT-TAAGA--CCAA-----GTGAAGAATGA---------TTTGTTT-C---AGTTGCTTCA-CCAGT-AAGT--AAATTTCCGTTAA-----AAGACATCTCTCGATTCTCTGTCATGATCAGTCATCGACTAAC-AGC-AT--GCTGTATTCA--------TACTCTAAATCGTT------AAAATGCT-TG-AATCA-ATAACAC--TAAAGGTGAAATCAAGCG-CTT--TG-CT-----GA-TTCAGATCGGTCCAC-A-TAACATTTGATTTAAAAATCGGAATTTT--TACCAAACAAACTGAAT--TTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTT--GGCTTTCT
gi|31 : ttaatgtcaacttttcagctcttcaCTGTTTACCCTAAACAAAGCCTGTCAgccgtaaaaaatacggtgaaaacggaagagtaaacaggtc
gi|4 : acCTGTTA--CCTAA-CGA-GCCTGTCAGTAAGATTTTCCCG-AA-TTTTA-GA-GTTT-TGTCA---------GTAC----------A-TCACCA-GCGAG-G--------TC-C-ACC-AATAC--AC----A---AATTATTTAA-ATC----------GGTAGG-AGG-GGG-GTCCC---CA---AGAAATTTTAAAATAATTTAC-ATTG-------AA---AACGCTTA--TTAG--GTATAGACT-G-ACTGAGAC-AGACTG-AAA-GACAGATAAAATGTTGGACGTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATTCT--ATTTTTT-GTAATAC--AGATGT-CAATGATTTAAGATTGGAATG-A-T-AA-GTC------ATTCTTTTTGGTACCC-AAGAAATCTTGAAATAATACATTTG-------AAAGT-ACCTTATTA----------TTTAGACTA-----GACAGAATG-AA-----ATACAGGTAAAATGTTGGACAA------------TT--TCAATGAA-ATC--T--GAGAAC-TAT----TACT--------A--TT--------------------TTTGTAATATG--T--CCCTTGCAACGATCCAGTAATT---CAATCA-AGCACTTTAA---TG-T-CACTAC-CA-TAGACACTATTGAATC-AGAA-----------C-ACT-C-----GGTTCTGATCGACATCG-TAT---CT--AGAC-TGGCCAGGG-ACAAATGCATGATTCCC-AATGGCAGCTGACA-TTGCATA-G----------------CAA---------TT-GCA---TT---ATCGGTC-CAA----T-CT---GAGT-CT--GAGCTT----G-TACAA----A-TGACTTGAA---A-AGT---TC---TATTGG-TAG-A
gi|5 : gacACTTTCAATGAAGCCTGTCAGTAAGATTTGCAGAATTTTTC-G-AGTTT--GTCAGTACAATCACCAGAGAGTGCCACATACTCAA-GTCGGGAAGATCC---------CCC-ATGAAATTTTGGAATAATACA-CTGTACATCAAAAGTAACCT-ATCAG---------TTTAGACTACACTAGACAGACTGAAA-----AGACAAGGAAATTAATGGACAAGGTTACACACATTT--TCAATGAA-ATC--TGAGAGAATATA-----TACTTTTGTCCAATTTTTTTTTTTTTTTTTTTTGCTTTTTGCAAAATGTCT--CCTTT-CAATGATCCAGTGATGTTA-A-TAACAAC-TTTTGAGCTCT-TCC-CTAC-CATTAGACACT-CTGAATTTAGAATATGGAAACCTC-ATT-C-GAAAGGTTTTGAT---CATCG-TAT-------AGA------CAAGG-ACAAATTCTTG-TTCAA-AAT--CAGCTGAAA-TTGCATA-G---C----------T-
gi|6 : gacccgtttCTGTTTACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAAC---------GC-C-A-C------------------AA-TATTTAA-GTC----------GGGGGG-G-----------C---CA---AGAAATTTTGAAATAA--TACTG-TA-------ACAGTAAC-CTTA--TTAG--TT-TATTTA-G-ACT-AGAC----------A-GACGTGTAAAATGTTGGAC-TAGGTT--ACACATTTTCAATGAAATCAA-----AGAGTATACT--A-TTTTT-GTACTAT--GT---TCC------CT----TT-GAACA-A-TCCA-GTC------AT--TTTTTGAT-CCCTAAGAAATTTTGAAATAATACA-TTGA------AAAGTAACCTTATTAG---------TTTAGATTA-----GACAGACTGAAA-----AGACGGGTAAAATGTTGGACAAGGT---ACACATTT--TCAATGAA-ATCAAT--TAGAAT-TAGAATGTACT--------A--TT--------------------TTTGTAATATGA-C--CCTTT-CAACGATCCAGTGATTTCAt
gi|7 : acGATTTGCA-G-AA-TTTTTCGA-GTTT--GTCA---------GCACA---------A-TCACCA-GAGAGT---------GC-C-A-C-AATAT-GGC----A---CA-TACTCAA-GTC---------------T-GGA-AGAT-CCCC---CA---TGAAATTTTGGAATAA--TAC-ACTGTACATCAAAAGTAAC-C-TA--TCAG--TT-TACACTAG-ACT-AGAC-AGACTGAAAA-GACAGGGAAATTATTGGACA-AGGTTACACACATTTTCAATGAAaat
gi|8 : CTGTTAACCCTCAATTAAGCCTGTAAGTAAGATTATCT-G-AA-TTTTT--A-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCA-GTGAGTGCCACAAATGC-CCA-C-AATAC-GAC----A---CA-TATCTAA-GTG----------GGGGGG-GGG-GGGTGTCCC---CA---ATAAATCTTGAAACAT--TGCAA-TG-------AAAGTAAC-CTTA--TCAG--TT-TA-----G-ACT-AGAC-AAA
gi|9 : agacATTTTCA-GCAA-TTTCT-GAAGTTTCTGTTAA--------GTACA---------GGTTATCA-GTGAGTG--------TC-A-G-C-AATACTGGC----A------CACTTAACATC----------AGGAGG-AGGCGGGCATCCC---CCCTTAAAAGTTATAAAATAA----C-T-TT-------AAAATA---CTTAAATCATCTTT-TAGACT-ACACT-AGACCAGACTGAAAA-GACGG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): GCAGCATAATGTTTGAAGTTGGGGGGGGGGCGGGGGGGGGGGTCAGCTACATTATGAACGACACACTGGAAAT
Unaligned ( gi|24 ): TTTTTTGCCTTTCTACCGTAAGAAATACAGTGAAAACGGAAGAGTAAACAGGTCTGT
Unaligned ( gi|29 ): CGTAAGAAATATGGCGGAAACGGAAGAGTAAACAGATCTGA
Unaligned ( gi|30 ): CGGTGAAAACGGAAGAGTAAACAGGTCTGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222222222 333333333 2222222222 111111111 1111111111 111 222222222222 111 111 22 22222 11 1 111111 111 111 1 22222222222 3333333 3333333333 22222 222222 333 11 22222 888888888888888888888888888888888 22222 1 3333333333 11111 11 11 55555555555555555555555 2222 22222222 11 11111111111111111111111111111111111111111111 11 111111 111 11 2222222 1111 111 111 111 11 2222 2222 2222 1 111 1 6666666666 11 2222222 1111 222 22222222222222 11 222222 11 22222 1 666666666666 22222222 1 11 9999999999999999999999999999999999999999 1 1 11 66666666 2222222222 1 1 1 111 2222 1 11 1 22222 1 1 1 1111 333333 11 11 222 1 11 11
lowQualScore : 1 1 1 99 4 8 66 4 44 000000000 222222222 4 4 9999999999 4 4 4 4 55 999999999 4 4 9999999999 0 4 4 444 777 777 1 66 888888888888 5 66 888 5 4 666 6 111 5 8 000 22 3 55555 1 33 3 0 3 0 777777 8 3 2 0 7 444 111 2 0 99999999999 0 0 8 8 8 4444444 0 0 7777777777 00000 0 0 000000 111 99 6 99999 11 88888 888888888888888888888888888888888 44444 8 22 2 8 5 0 3 1 1111111111 44444 0 66 33 99999999999999999999999 0000 8 44444444 8 8 0 8 8 11 8 33333333333333333333333333333333333333333333 99 999999 444 8 66 3 0000000 7777 8 8 444 8 444 444 8 33 1111 0000 0 0000 0 777 4 0 5555555555 11 1 5 6 1111111 2222 77 6 999 1 000 77 77 77 77 55555555555555 99 11 333333 8 8 11 00000 0 444444444444 77777777 6 3 7 7 88 7 7777777777777777777777777777777777777777 3 3 88 1 44444444 1 1 5555555555 3 3 3 7 999 4444 3 88 3 11111 3 7 3 3 7 2222 888888 88 1 88 6 888 6 3 7 3 6 2 33 9 3 33 0
lowQualScore : . . . .. . . .. . .. ......... ......... . . .......... . . . . .. ......... . . .......... . . . ... ... ... . .. ............ . .. ... . . ... . ... . . ... .. . ..... . .. . . . . ...... . . . . . ... ... . . ........... . . . . . ....... . . .......... ..... . . ...... ... .. . ..... .. ..... ................................. ..... . .. . . . . . . .......... ..... . .. .. ....................... .... . ........ . . . . . .. . ............................................ .. ...... ... . .. . ....... .... . . ... . ... ... . .. .... .... . .... . ... . . .......... .. . . . ....... .... .. . ... . ... .. .. .. .. .............. .. .. ...... . . .. ..... . ............ ........ . . . . .. . ........................................ . . .. . ........ . . .......... . . . . ... .... . .. . ..... . . . . . .... ...... .. . .. . ... . . . . . . .. . . .. .
lowQualScore : 0 7 1 44 0 9 77 4 88 000000000 000000000 0 4 4444444444 4 4 4 4 66 888888888 4 4 4444444444 1 0 0 444 888 888 0 99 555555555555 0 99 666 7 3 000 7 000 6 0 444 00 8 00000 0 88 2 0 2 8 555555 8 2 5 8 0 222 000 5 0 88888888888 8 2 0 0 0 0000000 8 8 0000000000 00000 8 8 888888 666 22 7 33333 88 00000 000000000000000000000000000000000 00000 0 22 5 8 0 2 2 0 0000000000 44444 8 22 88 00000000000000000000000 0000 0 22222222 0 0 6 0 0 00 0 22222222222222222222222222222222222222222222 00 000000 000 0 22 2 8888888 2222 0 0 000 0 000 000 0 22 2222 5555 2 8888 0 555 2 0 0000000000 00 0 2 7 0000000 1111 99 7 888 7 000 99 99 99 99 00000000000000 22 00 000000 0 0 00 00000 0 000000000000 33333333 7 3 3 3 33 3 0000000000000000000000000000000000000000 3 3 33 0 00000000 0 0 7777777777 3 3 3 3 333 7777 3 33 3 77777 3 3 3 3 3 7777 333333 00 0 33 7 000 7 7 3 3 7 5 00 8 2 88 2
consensus : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
Reference ( family-3492 ) : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
gi|1 : CTGTTTACCT--AACGAAGC-TGCCAGTAAGATTTTCTTG-AA-TTTTA-GA-GTTT--GTCA---------GTACA---------A-TAACCA-GCGAGTG--------GCTC-A-CTAATAC-CAC----A---AA-TATTTTA--TC----------GGAGGGAGGG-GGGTGTCCC---CA---GGAAATTTTAAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TTA---TT-TAGATT-G-ACT-AGAC-A-ACTGAGAATGACAGGTAAAATGTTGTACCTAGGTTTTACACATTTTCAATGAA-TCTG-----AGAATATTCT--ATTTTTTTGTAATACATGTATGTCCAATGATCTAAGATTG--ATG-A-TCAAAGTC------ATT-TTCTTGGT-CCA-AGGAAATCTTGAAATAATACA-TTG-------AAGATAAC-TTATTAT---------CTTAGACTA-----G-CAGACTGAAA------GACAGGTAAAATGTTGGACTAGGTTTCACACAATTAATGCATGAACATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATTCAGTGATTTCACACTAACAGCATGTTAA---TGGT-C-CTAC-AG-TAGAC-CT-CTGAATCTAAAA---------CTC-GGT-CTGA-----TCTGA----CATCGCTAT---CT-AAGAC-TGGCCAGGGGACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---CATTGCATTAGT-CGGTCACTATGCCTTGCA---TTC--GTCGGT--CAA----T-CC---GAGT-CT-AGAGCTT----G-TACAG---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAA---ATTTT-----A-TATTC---ATGATG-AGAGTCAGAGATGTCGATTCTGCATGTC--AACGGCAATCATTCCTTCCCC-GTG-GC-A-----T--GCGA----AGTTC--ATTTTCA--CATACTGAACAA-AACCCACAT--A--CCTTTCAC--CTT---GGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-TTAAAAATCTT-TAAAC--CTAT-----GTGAA-AA--T---------ATTGTTT-C-TCAG-TGATT-A-TCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGC--C-ATC------CGACTAGC-AGC-AT--GCTGGATTCAT------ACATCTCAA-----TCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTTGCGTTAAA---TACG-CTT--TG-CTAATC-GA-TTCAGATC-GATCAC-ATTAACA-TT------AAAATCGGAATTCTTGTACAAAAAAAAAAGAAT--TTTTTT----TTTTA-----TACCGTAATTTTACGCA-CGACGA-CG-TACAAGT-TTTTTT--ACCTTTCT
gi|10 : aTTT----TAACT----TTT---AA-TATTC---ATGGTG-AGACT----------GATTCTGCATGTT--GACGGCAATCATTTCTTTTCCCGTGCGC-AAC---T--GCGA----AGTTC--ACTT-CA--CATACTG---AACGA---ACAT--ACCCCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAAC
gi|11 : -CCC-AAGAAATTTTGAAATAATATA-GT---------ACCTAACCTTATTAGACAACTCAGTTTAGACTA-----GACAAACTGAAATGATAAGACAGGTAAAATGTTGGACAAGGTT--ACACATTT--TCAATGAA-ATC--T--GAGA
gi|12 : gttgCTGTTTAACCTAAACGAACACTGTCAGTAAGATTTTCC-G-A
gi|12 : ac-TGTCA---------GTAAG---------A-TTTTC---CGA-TG---------C-C-A-C-AATAC-GAC----A---CA-TATTCAA-GTC----------GATGGG-GGG-tgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|12 : acctgtttaacctaaacgaacacTTGGACTT-GGTT--ACACATTTTCAATGAAATCttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|13 : acctgtttaacctaaacgaacactgtcagtaagattttccgatgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtA-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCAAGTGAGTG---------C-C-A-C-AATAC-GAC----AT--AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGGGGGGGGCA---ATACATTTTGAAA-AA--CAC-AATG-------AAAGTAAC-CTTA--
gi|14 : A-GTTT-TATCAATGCATTGAGTACA---------A-GCACCA-GTAAGTG---------C-C-A-C-AATAT-GGCTCTTATTTAA-GATTCAA-GTCAGAAGGGGGGGGGGGG-GGG-GGTACCCCC---CA---ATAAATTCTGAAAa
gi|15 : CGA----AGTTC--ATTT-CA--CATACTGAACAATAA---AAAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTGGTCAA--AAACGGC--CATAT------TTCTCT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-A
gi|16 : AATCATTCCTTCCCCCATGCGC-AAATTAT--GCAA----AGTTC--ATTT-CG--CATACTGAACAATGA---ACAT--A--CCTTTCAC--CTT--TAGAC----------G---AT
gi|17 : AAAAAACTGAAACATTGTTCCGGAGGTT--TTTTTACC----CGT-AC-CACCTACGACCGTTAAACATTTTTTTTGGGTCTTTCT
gi|18 : AACAACAA---ACAT--A--CCTTTTGC--CTT--TTGAC----------GATTATTAGTCAA--AAACGGC--CATAT------TT-TAT-ATAAGAATCTT-TAATC--CTAA-----ac
gi|2 : TTTTACACTAA-ACCATAACAA---CA-T-G-CCAC-AA----ATACT---GAAC----AA---------TTCTGGTGC-G---GATCTTGAA---CATCA-TAT---CT-A-GACATGGCCAGG--ACAAATGCAT--TTCGCGAAT--CAGCTGACAATTGCATA-AAGAC----------T-ATT-------ATCT-GCAATGTTAGCGTCGGTACCAAAATAC-CCAAAGAATAC--AGAGCTTTGAAG--ACAAAAAGA-TGA-TTGAAGAAA-AGTATCTCATATATTGGATAGTATGTTATGGTAACC-ATCTTT---AAATATGCGAGATAGAGTAGACTATCT----TTGATTCT-CATGTATAAACAGCAATCATTC-TTCCCGC-TGGAC-AA----TTCGCGA----AGTTCTCATTT-CGAGCATATAGAACACCAACACACATCAA--CCCTACACAGCGTGATGGATAGAACTATAAG---ATTTTTCAACAAAACTGCTTCAAATGGACTTTTCAATTGTACGAAACTTGTAAACATTTAATTCATGTAAC-AATATTTCGTAACGATTATTTGCGTCA-TTGATTCAGCC--TTGAATCCAA---TCAGTCAAGAAAGTAAAT----------T-TCTCCTGC---------TCGACTAGCAAGCAATTAGCTGCATCCAAAGAACGACAATACAAACTGCTCTTATAAAAATGTTATGTAATCAGATAAAACTTTTC-TAATAAA-CGCACGACTTAATGACTGATCAGACTTCAG-TG-TTTCACTATTA--TTTT------AACATTG
gi|20 : gtGG-GGG-GGGT---CC---CA---CTAAATTTTAAAATAT--TAC-AATG-------AAAGTAGC-CTTA--TCAG--TT-TGGACT-A-Attgatgagtgaagtcgagcaaattatattggttaacaaactcaaataaaaaaacacgcaattttttttt
gi|21 : CTGCATGTC--GTTGACAATCAGTCCTTCCCCCGTTTGCAAA----T--GTGAATTTAGTTC--ATTacaaatgcaaa
gi|22 : cttagattctgcagaCTGTTTACCCAAAACGAAGCCTGTCAGTAAGAGTTCCC-A-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-T
gi|23 : gcTTT--TCAATGAA-ATC--T--GAGAA--TA-----TATT--------A-TTT--------------------TTTGTAATATG--TAACCTTT-GAACGAT
gi|25 : GACGACCGA-AAACGTATTTT-T--GCCTTTCTtgac
gi|26 : --CAA----T-CC---GAGT-CTTAGAG---------TACAA---AA-TGA-TTGAA---A-AGT---TC---TATTGG-TAaccgtaagaaatacggtgaaaacgg
gi|27 : CTGTTAACCCTCAATGAAGCCTGTCAGTAAGATTATCT-G-AA-T
gi|28 : gacCTGTTAACCCTCAATCAAGC-TGCCAGTAAGATTCTCT-G-AA-TTTT
gi|3 : -CTACCAG-TAGACACT-ATGAATATAGAAAT-------CTC-ATT-C-GAAAGGTTCTGAT---CATTG-TATAGACTGAACAC-TGGCCTGGG-ACAAAGTCATG-TTTGC-AAT--CAGCTGACA-TTGCATAAG---C----------TTCGA-------GCTT---A---TA---GTCAGT--CAA----TACC---GAGT-CTTAGAGTTT----GGTACAA---GAATGA-TTGAA---ACAGT---TC---TATTGG-TAG--TTTA----TAATTTATCTTTGTTAA-TATTC---ATGGCG-AGACT--------TTGATTCTGCATGTC--GGCGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CA--CATACTGAACAACAA---ACAT--A--CATTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--TACAT------CTCTAT-ATAAGAATCTT-TAAGA--CCAA-----GTGAAGAATGA---------TTTGTTT-C---AGTTGCTTCA-CCAGT-AAGT--AAATTTCCGTTAA-----AAGACATCTCTCGATTCTCTGTCATGATCAGTCATCGACTAAC-AGC-AT--GCTGTATTCA--------TACTCTAAATCGTT------AAAATGCT-TG-AATCA-ATAACAC--TAAAGGTGAAATCAAGCG-CTT--TG-CT-----GA-TTCAGATCGGTCCAC-A-TAACATTTGATTTAAAAATCGGAATTTT--TACCAAACAAACTGAAT--TTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTT--GGCTTTCT
gi|31 : ttaatgtcaacttttcagctcttcaCTGTTTACCCTAAACAAAGCCTGTCAgccgtaaaaaatacggtgaaaacggaagagtaaacaggtc
gi|4 : acCTGTTA--CCTAA-CGA-GCCTGTCAGTAAGATTTTCCCG-AA-TTTTA-GA-GTTT-TGTCA---------GTAC----------A-TCACCA-GCGAG-G--------TC-C-ACC-AATAC--AC----A---AATTATTTAA-ATC----------GGTAGG-AGG-GGG-GTCCC---CA---AGAAATTTTAAAATAATTTAC-ATTG-------AA---AACGCTTA--TTAG--GTATAGACT-G-ACTGAGAC-AGACTG-AAA-GACAGATAAAATGTTGGACGTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATTCT--ATTTTTT-GTAATAC--AGATGT-CAATGATTTAAGATTGGAATG-A-T-AA-GTC------ATTCTTTTTGGTACCC-AAGAAATCTTGAAATAATACATTTG-------AAAGT-ACCTTATTA----------TTTAGACTA-----GACAGAATG-AA-----ATACAGGTAAAATGTTGGACAA------------TT--TCAATGAA-ATC--T--GAGAAC-TAT----TACT--------A--TT--------------------TTTGTAATATG--T--CCCTTGCAACGATCCAGTAATT---CAATCA-AGCACTTTAA---TG-T-CACTAC-CA-TAGACACTATTGAATC-AGAA-----------C-ACT-C-----GGTTCTGATCGACATCG-TAT---CT--AGAC-TGGCCAGGG-ACAAATGCATGATTCCC-AATGGCAGCTGACA-TTGCATA-G----------------CAA---------TT-GCA---TT---ATCGGTC-CAA----T-CT---GAGT-CT--GAGCTT----G-TACAA----A-TGACTTGAA---A-AGT---TC---TATTGG-TAG-A
gi|5 : gacACTTTCAATGAAGCCTGTCAGTAAGATTTGCAGAATTTTTC-G-AGTTT--GTCAGTACAATCACCAGAGAGTGCCACATACTCAA-GTCGGGAAGATCC---------CCC-ATGAAATTTTGGAATAATACA-CTGTACATCAAAAGTAACCT-ATCAG---------TTTAGACTACACTAGACAGACTGAAA-----AGACAAGGAAATTAATGGACAAGGTTACACACATTT--TCAATGAA-ATC--TGAGAGAATATA-----TACTTTTGTCCAATTTTTTTTTTTTTTTTTTTTGCTTTTTGCAAAATGTCT--CCTTT-CAATGATCCAGTGATGTTA-A-TAACAAC-TTTTGAGCTCT-TCC-CTAC-CATTAGACACT-CTGAATTTAGAATATGGAAACCTC-ATT-C-GAAAGGTTTTGAT---CATCG-TAT-------AGA------CAAGG-ACAAATTCTTG-TTCAA-AAT--CAGCTGAAA-TTGCATA-G---C----------T-
gi|6 : gacccgtttCTGTTTACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAAC---------GC-C-A-C------------------AA-TATTTAA-GTC----------GGGGGG-G-----------C---CA---AGAAATTTTGAAATAA--TACTG-TA-------ACAGTAAC-CTTA--TTAG--TT-TATTTA-G-ACT-AGAC----------A-GACGTGTAAAATGTTGGAC-TAGGTT--ACACATTTTCAATGAAATCAA-----AGAGTATACT--A-TTTTT-GTACTAT--GT---TCC------CT----TT-GAACA-A-TCCA-GTC------AT--TTTTTGAT-CCCTAAGAAATTTTGAAATAATACA-TTGA------AAAGTAACCTTATTAG---------TTTAGATTA-----GACAGACTGAAA-----AGACGGGTAAAATGTTGGACAAGGT---ACACATTT--TCAATGAA-ATCAAT--TAGAAT-TAGAATGTACT--------A--TT--------------------TTTGTAATATGA-C--CCTTT-CAACGATCCAGTGATTTCAt
gi|7 : acGATTTGCA-G-AA-TTTTTCGA-GTTT--GTCA---------GCACA---------A-TCACCA-GAGAGT---------GC-C-A-C-AATAT-GGC----A---CA-TACTCAA-GTC---------------T-GGA-AGAT-CCCC---CA---TGAAATTTTGGAATAA--TAC-ACTGTACATCAAAAGTAAC-C-TA--TCAG--TT-TACACTAG-ACT-AGAC-AGACTGAAAA-GACAGGGAAATTATTGGACA-AGGTTACACACATTTTCAATGAAaat
gi|8 : CTGTTAACCCTCAATTAAGCCTGTAAGTAAGATTATCT-G-AA-TTTTT--A-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCA-GTGAGTGCCACAAATGC-CCA-C-AATAC-GAC----A---CA-TATCTAA-GTG----------GGGGGG-GGG-GGGTGTCCC---CA---ATAAATCTTGAAACAT--TGCAA-TG-------AAAGTAAC-CTTA--TCAG--TT-TA-----G-ACT-AGAC-AAA
gi|9 : agacATTTTCA-GCAA-TTTCT-GAAGTTTCTGTTAA--------GTACA---------GGTTATCA-GTGAGTG--------TC-A-G-C-AATACTGGC----A------CACTTAACATC----------AGGAGG-AGGCGGGCATCCC---CCCTTAAAAGTTATAAAATAA----C-T-TT-------AAAATA---CTTAAATCATCTTT-TAGACT-ACACT-AGACCAGACTGAAAA-GACGG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): GCAGCATAATGTTTGAAGTTGGGGGGGGGGCGGGGGGGGGGGTCAGCTACATTATGAACGACACACTGGAAAT
Unaligned ( gi|24 ): TTTTTTGCCTTTCTACCGTAAGAAATACAGTGAAAACGGAAGAGTAAACAGGTCTGT
Unaligned ( gi|29 ): CGTAAGAAATATGGCGGAAACGGAAGAGTAAACAGATCTGA
Unaligned ( gi|30 ): CGGTGAAAACGGAAGAGTAAACAGGTCTGTC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 222222222 333333333 2222222222 111111111 1111111111 111 222222222222 111 111 22 22222 11 1 111111 111 111 1 22222222222 3333333 3333333333 22222 222222 333 11 22222 888888888888888888888888888888888 22222 1 3333333333 11111 11 11 55555555555555555555555 2222 22222222 11 11111111111111111111111111111111111111111111 11 111111 111 11 2222222 1111 111 111 111 11 2222 2222 2222 1 111 1 6666666666 11 2222222 1111 222 22222222222222 11 222222 11 22222 1 666666666666 22222222 1 11 9999999999999999999999999999999999999999 1 1 11 66666666 2222222222 1 1 1 111 2222 1 11 1 22222 1 1 1 1111 333333 11 11 222 1 11 11
lowQualScore : 1 1 1 99 4 8 66 4 44 000000000 222222222 4 4 9999999999 4 4 4 4 55 999999999 4 4 9999999999 0 4 4 444 777 777 1 66 888888888888 5 66 888 5 4 666 6 111 5 8 000 22 3 55555 1 33 3 0 3 0 777777 8 3 2 0 7 444 111 2 0 99999999999 0 0 8 8 8 4444444 0 0 7777777777 00000 0 0 000000 111 99 6 99999 11 88888 888888888888888888888888888888888 44444 8 22 2 8 5 0 3 1 1111111111 44444 0 66 33 99999999999999999999999 0000 8 44444444 8 8 0 8 8 11 8 33333333333333333333333333333333333333333333 99 999999 444 8 66 3 0000000 7777 8 8 444 8 444 444 8 33 1111 0000 0 0000 0 777 4 0 5555555555 11 1 5 6 1111111 2222 77 6 999 1 000 77 77 77 77 55555555555555 99 11 333333 8 8 11 00000 0 444444444444 77777777 6 3 7 7 88 7 7777777777777777777777777777777777777777 3 3 88 1 44444444 1 1 5555555555 3 3 3 7 999 4444 3 88 3 11111 3 7 3 3 7 2222 888888 88 1 88 6 888 6 3 7 3 6 2 33 9 3 33 0
lowQualScore : . . . .. . . .. . .. ......... ......... . . .......... . . . . .. ......... . . .......... . . . ... ... ... . .. ............ . .. ... . . ... . ... . . ... .. . ..... . .. . . . . ...... . . . . . ... ... . . ........... . . . . . ....... . . .......... ..... . . ...... ... .. . ..... .. ..... ................................. ..... . .. . . . . . . .......... ..... . .. .. ....................... .... . ........ . . . . . .. . ............................................ .. ...... ... . .. . ....... .... . . ... . ... ... . .. .... .... . .... . ... . . .......... .. . . . ....... .... .. . ... . ... .. .. .. .. .............. .. .. ...... . . .. ..... . ............ ........ . . . . .. . ........................................ . . .. . ........ . . .......... . . . . ... .... . .. . ..... . . . . . .... ...... .. . .. . ... . . . . . . .. . . .. .
lowQualScore : 0 7 1 44 0 9 77 4 88 000000000 000000000 0 4 4444444444 4 4 4 4 66 888888888 4 4 4444444444 1 0 0 444 888 888 0 99 555555555555 0 99 666 7 3 000 7 000 6 0 444 00 8 00000 0 88 2 0 2 8 555555 8 2 5 8 0 222 000 5 0 88888888888 8 2 0 0 0 0000000 8 8 0000000000 00000 8 8 888888 666 22 7 33333 88 00000 000000000000000000000000000000000 00000 0 22 5 8 0 2 2 0 0000000000 44444 8 22 88 00000000000000000000000 0000 0 22222222 0 0 6 0 0 00 0 22222222222222222222222222222222222222222222 00 000000 000 0 22 2 8888888 2222 0 0 000 0 000 000 0 22 2222 5555 2 8888 0 555 2 0 0000000000 00 0 2 7 0000000 1111 99 7 888 7 000 99 99 99 99 00000000000000 22 00 000000 0 0 00 00000 0 000000000000 33333333 7 3 3 3 33 3 0000000000000000000000000000000000000000 3 3 33 0 00000000 0 0 7777777777 3 3 3 3 333 7777 3 33 3 77777 3 3 3 3 3 7777 333333 00 0 33 7 000 7 7 3 3 7 5 00 8 2 88 2
consensus : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
Reference ( family-3492 ) : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
gi|1 : CTGTTTACCT--AACGAAGC-TGCCAGTAAGATTTTCTTG-AA-TTTTA-GA-GTTT--GTCA---------GTACA---------A-TAACCA-GCGAGTG--------GCTC-A-CTAATAC-CAC----A---AA-TATTTTA--TC----------GGAGGGAGGG-GGGTGTCCC---CA---GGAAATTTTAAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TTA---TT-TAGATT-G-ACT-AGAC-A-ACTGAGAATGACAGGTAAAATGTTGTACCTAGGTTTTACACATTTTCAATGAA-TCTG-----AGAATATTCT--ATTTTTTTGTAATACATGTATGTCCAATGATCTAAGATTG--ATG-A-TCAAAGTC------ATT-TTCTTGGT-CCA-AGGAAATCTTGAAATAATACA-TTG-------AAGATAAC-TTATTAT---------CTTAGACTA-----G-CAGACTGAAA------GACAGGTAAAATGTTGGACTAGGTTTCACACAATTAATGCATGAACATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATTCAGTGATTTCACACTAACAGCATGTTAA---TGGT-C-CTAC-AG-TAGAC-CT-CTGAATCTAAAA---------CTC-GGT-CTGA-----TCTGA----CATCGCTAT---CT-AAGAC-TGGCCAGGGGACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---CATTGCATTAGT-CGGTCACTATGCCTTGCA---TTC--GTCGGT--CAA----T-CC---GAGT-CT-AGAGCTT----G-TACAG---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAA---ATTTT-----A-TATTC---ATGATG-AGAGTCAGAGATGTCGATTCTGCATGTC--AACGGCAATCATTCCTTCCCC-GTG-GC-A-----T--GCGA----AGTTC--ATTTTCA--CATACTGAACAA-AACCCACAT--A--CCTTTCAC--CTT---GGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-TTAAAAATCTT-TAAAC--CTAT-----GTGAA-AA--T---------ATTGTTT-C-TCAG-TGATT-A-TCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGC--C-ATC------CGACTAGC-AGC-AT--GCTGGATTCAT------ACATCTCAA-----TCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTTGCGTTAAA---TACG-CTT--TG-CTAATC-GA-TTCAGATC-GATCAC-ATTAACA-TT------AAAATCGGAATTCTTGTACAAAAAAAAAAGAAT--TTTTTT----TTTTA-----TACCGTAATTTTACGCA-CGACGA-CG-TACAAGT-TTTTTT--ACCTTTCT
gi|10 : aTTT----TAACT----TTT---AA-TATTC---ATGGTG-AGACT----------GATTCTGCATGTT--GACGGCAATCATTTCTTTTCCCGTGCGC-AAC---T--GCGA----AGTTC--ACTT-CA--CATACTG---AACGA---ACAT--ACCCCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAAC
gi|11 : -CCC-AAGAAATTTTGAAATAATATA-GT---------ACCTAACCTTATTAGACAACTCAGTTTAGACTA-----GACAAACTGAAATGATAAGACAGGTAAAATGTTGGACAAGGTT--ACACATTT--TCAATGAA-ATC--T--GAGA
gi|12 : gttgCTGTTTAACCTAAACGAACACTGTCAGTAAGATTTTCC-G-A
gi|12 : ac-TGTCA---------GTAAG---------A-TTTTC---CGA-TG---------C-C-A-C-AATAC-GAC----A---CA-TATTCAA-GTC----------GATGGG-GGG-tgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|12 : acctgtttaacctaaacgaacacTTGGACTT-GGTT--ACACATTTTCAATGAAATCttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|13 : acctgtttaacctaaacgaacactgtcagtaagattttccgatgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtA-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCAAGTGAGTG---------C-C-A-C-AATAC-GAC----AT--AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGGGGGGGGCA---ATACATTTTGAAA-AA--CAC-AATG-------AAAGTAAC-CTTA--
gi|14 : A-GTTT-TATCAATGCATTGAGTACA---------A-GCACCA-GTAAGTG---------C-C-A-C-AATAT-GGCTCTTATTTAA-GATTCAA-GTCAGAAGGGGGGGGGGGG-GGG-GGTACCCCC---CA---ATAAATTCTGAAAa
gi|15 : CGA----AGTTC--ATTT-CA--CATACTGAACAATAA---AAAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTGGTCAA--AAACGGC--CATAT------TTCTCT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-A
gi|16 : AATCATTCCTTCCCCCATGCGC-AAATTAT--GCAA----AGTTC--ATTT-CG--CATACTGAACAATGA---ACAT--A--CCTTTCAC--CTT--TAGAC----------G---AT
gi|17 : AAAAAACTGAAACATTGTTCCGGAGGTT--TTTTTACC----CGT-AC-CACCTACGACCGTTAAACATTTTTTTTGGGTCTTTCT
gi|18 : AACAACAA---ACAT--A--CCTTTTGC--CTT--TTGAC----------GATTATTAGTCAA--AAACGGC--CATAT------TT-TAT-ATAAGAATCTT-TAATC--CTAA-----ac
gi|2 : TTTTACACTAA-ACCATAACAA---CA-T-G-CCAC-AA----ATACT---GAAC----AA---------TTCTGGTGC-G---GATCTTGAA---CATCA-TAT---CT-A-GACATGGCCAGG--ACAAATGCAT--TTCGCGAAT--CAGCTGACAATTGCATA-AAGAC----------T-ATT-------ATCT-GCAATGTTAGCGTCGGTACCAAAATAC-CCAAAGAATAC--AGAGCTTTGAAG--ACAAAAAGA-TGA-TTGAAGAAA-AGTATCTCATATATTGGATAGTATGTTATGGTAACC-ATCTTT---AAATATGCGAGATAGAGTAGACTATCT----TTGATTCT-CATGTATAAACAGCAATCATTC-TTCCCGC-TGGAC-AA----TTCGCGA----AGTTCTCATTT-CGAGCATATAGAACACCAACACACATCAA--CCCTACACAGCGTGATGGATAGAACTATAAG---ATTTTTCAACAAAACTGCTTCAAATGGACTTTTCAATTGTACGAAACTTGTAAACATTTAATTCATGTAAC-AATATTTCGTAACGATTATTTGCGTCA-TTGATTCAGCC--TTGAATCCAA---TCAGTCAAGAAAGTAAAT----------T-TCTCCTGC---------TCGACTAGCAAGCAATTAGCTGCATCCAAAGAACGACAATACAAACTGCTCTTATAAAAATGTTATGTAATCAGATAAAACTTTTC-TAATAAA-CGCACGACTTAATGACTGATCAGACTTCAG-TG-TTTCACTATTA--TTTT------AACATTG
gi|20 : gtGG-GGG-GGGT---CC---CA---CTAAATTTTAAAATAT--TAC-AATG-------AAAGTAGC-CTTA--TCAG--TT-TGGACT-A-Attgatgagtgaagtcgagcaaattatattggttaacaaactcaaataaaaaaacacgcaattttttttt
gi|21 : CTGCATGTC--GTTGACAATCAGTCCTTCCCCCGTTTGCAAA----T--GTGAATTTAGTTC--ATTacaaatgcaaa
gi|22 : cttagattctgcagaCTGTTTACCCAAAACGAAGCCTGTCAGTAAGAGTTCCC-A-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-T
gi|23 : gcTTT--TCAATGAA-ATC--T--GAGAA--TA-----TATT--------A-TTT--------------------TTTGTAATATG--TAACCTTT-GAACGAT
gi|25 : GACGACCGA-AAACGTATTTT-T--GCCTTTCTtgac
gi|26 : --CAA----T-CC---GAGT-CTTAGAG---------TACAA---AA-TGA-TTGAA---A-AGT---TC---TATTGG-TAaccgtaagaaatacggtgaaaacgg
gi|27 : CTGTTAACCCTCAATGAAGCCTGTCAGTAAGATTATCT-G-AA-T
gi|28 : gacCTGTTAACCCTCAATCAAGC-TGCCAGTAAGATTCTCT-G-AA-TTTT
gi|3 : -CTACCAG-TAGACACT-ATGAATATAGAAAT-------CTC-ATT-C-GAAAGGTTCTGAT---CATTG-TATAGACTGAACAC-TGGCCTGGG-ACAAAGTCATG-TTTGC-AAT--CAGCTGACA-TTGCATAAG---C----------TTCGA-------GCTT---A---TA---GTCAGT--CAA----TACC---GAGT-CTTAGAGTTT----GGTACAA---GAATGA-TTGAA---ACAGT---TC---TATTGG-TAG--TTTA----TAATTTATCTTTGTTAA-TATTC---ATGGCG-AGACT--------TTGATTCTGCATGTC--GGCGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CA--CATACTGAACAACAA---ACAT--A--CATTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--TACAT------CTCTAT-ATAAGAATCTT-TAAGA--CCAA-----GTGAAGAATGA---------TTTGTTT-C---AGTTGCTTCA-CCAGT-AAGT--AAATTTCCGTTAA-----AAGACATCTCTCGATTCTCTGTCATGATCAGTCATCGACTAAC-AGC-AT--GCTGTATTCA--------TACTCTAAATCGTT------AAAATGCT-TG-AATCA-ATAACAC--TAAAGGTGAAATCAAGCG-CTT--TG-CT-----GA-TTCAGATCGGTCCAC-A-TAACATTTGATTTAAAAATCGGAATTTT--TACCAAACAAACTGAAT--TTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTT--GGCTTTCT
gi|31 : ttaatgtcaacttttcagctcttcaCTGTTTACCCTAAACAAAGCCTGTCAgccgtaaaaaatacggtgaaaacggaagagtaaacaggtc
gi|4 : acCTGTTA--CCTAA-CGA-GCCTGTCAGTAAGATTTTCCCG-AA-TTTTA-GA-GTTT-TGTCA---------GTAC----------A-TCACCA-GCGAG-G--------TC-C-ACC-AATAC--AC----A---AATTATTTAA-ATC----------GGTAGG-AGG-GGG-GTCCC---CA---AGAAATTTTAAAATAATTTAC-ATTG-------AA---AACGCTTA--TTAG--GTATAGACT-G-ACTGAGAC-AGACTG-AAA-GACAGATAAAATGTTGGACGTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATTCT--ATTTTTT-GTAATAC--AGATGT-CAATGATTTAAGATTGGAATG-A-T-AA-GTC------ATTCTTTTTGGTACCC-AAGAAATCTTGAAATAATACATTTG-------AAAGT-ACCTTATTA----------TTTAGACTA-----GACAGAATG-AA-----ATACAGGTAAAATGTTGGACAA------------TT--TCAATGAA-ATC--T--GAGAAC-TAT----TACT--------A--TT--------------------TTTGTAATATG--T--CCCTTGCAACGATCCAGTAATT---CAATCA-AGCACTTTAA---TG-T-CACTAC-CA-TAGACACTATTGAATC-AGAA-----------C-ACT-C-----GGTTCTGATCGACATCG-TAT---CT--AGAC-TGGCCAGGG-ACAAATGCATGATTCCC-AATGGCAGCTGACA-TTGCATA-G----------------CAA---------TT-GCA---TT---ATCGGTC-CAA----T-CT---GAGT-CT--GAGCTT----G-TACAA----A-TGACTTGAA---A-AGT---TC---TATTGG-TAG-A
gi|5 : gacACTTTCAATGAAGCCTGTCAGTAAGATTTGCAGAATTTTTC-G-AGTTT--GTCAGTACAATCACCAGAGAGTGCCACATACTCAA-GTCGGGAAGATCC---------CCC-ATGAAATTTTGGAATAATACA-CTGTACATCAAAAGTAACCT-ATCAG---------TTTAGACTACACTAGACAGACTGAAA-----AGACAAGGAAATTAATGGACAAGGTTACACACATTT--TCAATGAA-ATC--TGAGAGAATATA-----TACTTTTGTCCAATTTTTTTTTTTTTTTTTTTTGCTTTTTGCAAAATGTCT--CCTTT-CAATGATCCAGTGATGTTA-A-TAACAAC-TTTTGAGCTCT-TCC-CTAC-CATTAGACACT-CTGAATTTAGAATATGGAAACCTC-ATT-C-GAAAGGTTTTGAT---CATCG-TAT-------AGA------CAAGG-ACAAATTCTTG-TTCAA-AAT--CAGCTGAAA-TTGCATA-G---C----------T-
gi|6 : gacccgtttCTGTTTACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAAC---------GC-C-A-C------------------AA-TATTTAA-GTC----------GGGGGG-G-----------C---CA---AGAAATTTTGAAATAA--TACTG-TA-------ACAGTAAC-CTTA--TTAG--TT-TATTTA-G-ACT-AGAC----------A-GACGTGTAAAATGTTGGAC-TAGGTT--ACACATTTTCAATGAAATCAA-----AGAGTATACT--A-TTTTT-GTACTAT--GT---TCC------CT----TT-GAACA-A-TCCA-GTC------AT--TTTTTGAT-CCCTAAGAAATTTTGAAATAATACA-TTGA------AAAGTAACCTTATTAG---------TTTAGATTA-----GACAGACTGAAA-----AGACGGGTAAAATGTTGGACAAGGT---ACACATTT--TCAATGAA-ATCAAT--TAGAAT-TAGAATGTACT--------A--TT--------------------TTTGTAATATGA-C--CCTTT-CAACGATCCAGTGATTTCAt
gi|7 : acGATTTGCA-G-AA-TTTTTCGA-GTTT--GTCA---------GCACA---------A-TCACCA-GAGAGT---------GC-C-A-C-AATAT-GGC----A---CA-TACTCAA-GTC---------------T-GGA-AGAT-CCCC---CA---TGAAATTTTGGAATAA--TAC-ACTGTACATCAAAAGTAAC-C-TA--TCAG--TT-TACACTAG-ACT-AGAC-AGACTGAAAA-GACAGGGAAATTATTGGACA-AGGTTACACACATTTTCAATGAAaat
gi|8 : CTGTTAACCCTCAATTAAGCCTGTAAGTAAGATTATCT-G-AA-TTTTT--A-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCA-GTGAGTGCCACAAATGC-CCA-C-AATAC-GAC----A---CA-TATCTAA-GTG----------GGGGGG-GGG-GGGTGTCCC---CA---ATAAATCTTGAAACAT--TGCAA-TG-------AAAGTAAC-CTTA--TCAG--TT-TA-----G-ACT-AGAC-AAA
gi|9 : agacATTTTCA-GCAA-TTTCT-GAAGTTTCTGTTAA--------GTACA---------GGTTATCA-GTGAGTG--------TC-A-G-C-AATACTGGC----A------CACTTAACATC----------AGGAGG-AGGCGGGCATCCC---CCCTTAAAAGTTATAAAATAA----C-T-TT-------AAAATA---CTTAAATCATCTTT-TAGACT-ACACT-AGACCAGACTGAAAA-GACGG
blockSeqs : T A C CC C T TC A CT ATGCATTGA TTGAGTACA G A GCCACAAATG . C C . TG TCTTATTTA T C AGAAGGGGGG . C TGG GGG CTT T TT ACTGTACATCA G AA TCT A G AG G CAG A . GTA AC A TCAGT T GA T . T AGAT A A G A GGA TAC C . GGGAAGATCC A T T TACATCA GACAACTCAG CACTA TGATAA TAC . . TGA TA GAATG TTTGTCCAATTTTTTTTTTTTTTTTTTTTGCTT TAA G TT C C C A A GCTCTTCC CAGT AT AT TATGGAAACCTCATTCGAAA TCGA . AGACTGAA A . A G GG A AAGACTATTATCTGCAATGTTAGC AC AATAC AAA A TT C TGAAG AAAG A C GAA C ATC ATA A TA ATGG TTTA TGTT A GAG T T ATCTTT TA G C A ATTAT ATTT TC . GAG C CAC CA CC AG GA AGAACTATAAG CA TT GGACTT T G AT TTCAT G TATTTCGTAACG GCGTCAT C G A T CC A AAGACATCTCTCGATTCTCTGTCATGATCAGTCAT A A TA C AAGAACGA A A ACTGCTCTTA A T G T AAG TCAA A AA A GATCA C A G T T ACAT GATTTA . C CA C ATT G G T . C C TT T T GG
blockSeqs : T A C C . T A . T A TTGAGTACA . . GT . . . . G ATA . . . . . ACC . . T . AATG . . G . G AC . AG A . TT . A . G . T . T GTCA C A C G GCC A C . ATTCT . . . A G . A T . . AAT C T ATTT TCT . TT C A . A T TGTCA CATT A TT ATCTCATTCGAAA A . CTA . . . . . . AGCTTCGAGCTTATA C TA . . TT T GGT A . . . . . . . A . CCA T . . A . TT . A C . TTC . . . A T . . . . . GATT . . . . . . . . TGA CAGT C . . . . . GAAAGTAAATTTCTCCTGCT . . . T . C C ATCGTT . . . . CT CGC . . . . . . . . . TT . . C T . A . . C C TT A T .
blockSeqs : A C C C . . A . T . . . . GT . . . . G AC . . . . . TGT . . T . AATG . . G . T A . AG . . TA . G . A . . . . GT . . . . GA A . . ATT . . . . G . A . . . T T . ATT AC . TC . . . . T CATG CAT C C TTCTGGTGCG T . CTA . . . . . . GCAATTGCATT . T . . T C GT G . . . . . . . . . CT T . . C . . . G G . CT . . . A T . . . . . G . . . . . . . . C A A . .
blockSeqs : A C C T . . A . T . . . . G . . . . G AA . . . . . CAT . . G . ATTG . . G . C G . AA . . AA . A . . . . . . A . . . T . . ATT T . . AA . . CACTC T . A . . . . . . . T . . . . T . . . . . . . . . G T . T . . . G C . . . . . G . . . . . . .
blockSeqs : T A C T . . T . T . . . . G . . . . G AC . . . . . GT . . G . TGTA . . G . G G . . . . T . C . T . . . A C . . . . . G .
blockSeqs : A A C C . . T . T . . . . G . . . . G AC . . . . . TC . . G . AATG . . G . . G . . C . . . . . G
blockSeqs : T A C A . . . T . . . . G . . . . . A . . . . . T . . T . TTT . .
blockSeqs : A C . T . . . T . . . . G . . . . . A . . . . . . . . A
blockSeqs : A . . . . . . .
blockSeqCons : C* T* G********* AATG******** G** AG* TA* ** A***** T** ** ATTT***************************** T**** CAT** CCTCGTTCG************** T*** CTA***** T* GT***** ***
originalCons : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--------GC-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TAC-A-TG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGACNTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT--------------------TTTGTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTAC-AA-TAGACACT-CTGAATCTAGAA---------CTC-GNT-C-GAAAGGTTCTGAT---CATCG-TAT---CT-AAGAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CTTAGAGCTT----G-TACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
finalCons : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTTT-GTCA---------GTACA---------A-TCACCA-GCGAGTG---------C-C-A-C-AATAC-GAC----A---AA-TATTTAA-GTC----------GGGGGG-GGG-GGGTGTCCC---CA---ANAAATTTTGAAATAA--TACAATG--------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGACAG-ACTGAAAA-GACGGGTAAAATGTTGGACTA-GGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAAA-----GACAGGTAAAATGTTGGACAAGGTT--ACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACTATTT-----------------------------TTTGTAATATGT----CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTACCAT--AGACACT-CTGAATCTAGAACCTCGTTCG--------------GGTTCTGAT---CATCG-TATCTA-----GAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGACA-TTGCATA-G---C----------T-CGA-------GCCT-GCA---TT---GTCGGT--CAA----T-CC---GAGT-CT-AGAGCTTGT-----ACAA---GA-TGA-TTGAA---A-AGT---TC---TATTGG-TAG-ATTTT----TAACT-ATCTTT---AA-TATTC---ATGGCG-AGACT--------TCGATTCTGCATGTC--GACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGTTC--ATTT-CG--CATACTGAACAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCAA--AAACGGC--CATAT------TTCTAT-ATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): GCAGCATAATGTTTGAAGTTGGGGGGGGGGCGGGGGGGGGGGTCAGCTACATTATGAACGACACACTGGAAAT
Unaligned ( gi|24 ): TTTTTTGCCTTTCTACCGTAAGAAATACAGTGAAAACGGAAGAGTAAACAGGTCTGT
Unaligned ( gi|29 ): CGTAAGAAATATGGCGGAAACGGAAGAGTAAACAGATCTGA
Unaligned ( gi|30 ): CGGTGAAAACGGAAGAGTAAACAGGTCTGTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 11 222222222 333333333 2222222222 22222222222 1111111 111111 11 1111111 1 22 22222 11 1 111111 111 111 1 22222222222 3333333 3333333333 22222 222222 2222 11 22222 7777777777777777777777777777777777 22222 1 1 33333333 1 11 5555555555555555555555555555 2222 1111 11 11 1111111111111111111111111111111111111111111 11 1111 111 11 2222222 111 111 22222 11 2222 2222 3333 111 1 5555555555555555 11 2222222 1111 111 111 22222222222222 11 222222 11 22222 1 666666666666 22222222 1 11 9999999999999999999999999999999999999999 1 1 11 66666666 2222222222 1 1 1 111 2222 1 11 1 22222 1 1 1 1111 333333 11 11 222 1 11 11
lowQualScore : 1 1 1 99 4 4 22 4 44 000000000 222222222 4 4 66 8 3333333333 55 33333333333 4 4444444 0 4 4 777777 777 777 1 11 8 6666666 5 66 888 5 4 666 6 6 1 0 5 8 6 22 3 55555 1 33 3 0 3 0 777777 8 3 2 0 7 444 111 2 0 99999999999 0 0 8 8 8 4444444 0 0 7777777777 00000 0 0 000000 3333 99 6 99999 11 88888 1111111111111111111111111111111111 8 44444 8 22 2 8 5 0 3 0 33333333 8 6 0 66 5555555555555555555555555555 3 0000 8 4444 11 8 8 8 0 8 8 11 8 3333333333333333333333333333333333333333333 99 7777 8 444 66 3 0000000 444 3 8 8 444 8 8 00000 8 33 1111 0000 0 0000 777 4 0 2222222222222222 11 1 1 1 5 6 1111111 2222 77 5 999 000 1 000 77 77 77 1 77 55555555555555 99 11 333333 8 8 11 00000 0 444444444444 77777777 6 3 7 7 88 7 7777777777777777777777777777777777777777 3 3 88 1 44444444 1 1 5555555555 3 3 3 7 999 4444 3 88 3 11111 3 7 3 3 7 2222 888888 88 1 88 6 888 6 3 7 3 6 2 33 9 3 33 0
lowQualScore : . . . .. . . .. . .. ......... ......... . . .. . .......... .. ........... . ....... . . . ...... ... ... . .. . ....... . .. ... . . ... . . . . . . . .. . ..... . .. . . . . ...... . . . . . ... ... . . ........... . . . . . ....... . . .......... ..... . . ...... .... .. . ..... .. ..... .................................. . ..... . .. . . . . . . ........ . . . .. ............................ . .... . .... .. . . . . . . .. . ........................................... .. .... . ... .. . ....... ... . . . ... . . ..... . .. .... .... . .... ... . . ................ .. . . . . . ....... .... .. . ... ... . ... .. .. .. . .. .............. .. .. ...... . . .. ..... . ............ ........ . . . . .. . ........................................ . . .. . ........ . . .......... . . . . ... .... . .. . ..... . . . . . .... ...... .. . .. . ... . . . . . . .. . . .. .
lowQualScore : 0 7 1 44 0 4 44 4 88 000000000 000000000 0 4 11 9 9999999999 66 22222222222 4 4444444 1 0 0 666666 888 888 0 99 2 2222222 0 99 666 7 3 000 7 7 0 8 6 0 0 00 8 00000 0 88 2 0 2 8 555555 8 2 5 8 0 222 000 5 0 88888888888 8 2 0 0 0 0000000 8 8 0000000000 00000 8 8 888888 4444 22 7 33333 88 00000 6666666666666666666666666666666666 0 00000 0 22 5 8 0 2 2 8 22222222 0 0 8 22 8888888888888888888888888888 8 0000 0 8888 00 0 0 0 6 0 0 00 0 2222222222222222222222222222222222222222222 00 0000 0 000 88 2 8888888 000 2 0 0 000 0 0 00000 0 22 2222 5555 2 8888 555 2 0 2222222222222222 00 0 0 0 2 7 0000000 1111 99 7 888 000 7 000 99 99 99 4 99 00000000000000 22 00 000000 0 0 00 00000 0 000000000000 33333333 7 3 3 3 33 3 0000000000000000000000000000000000000000 3 3 33 0 00000000 0 0 7777777777 3 3 3 3 333 7777 3 33 3 77777 3 3 3 3 3 7777 333333 00 0 33 7 000 7 7 3 3 7 5 00 8 2 88 2
consensus : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--CCA-C----------AATAC-GAC----A---AA-TATTTAA-GTC-------GGGGGG-GGG-GGGTGT---CCC---CA---ANAAATTTTGAAATAA--TACANTG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGAC-TAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT-CACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT---------------------TT-GTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATTTTAA---CG-T-C-CTACCA-TAGACACT-CTGAATCTAG--------AA-C-CTCGTTCGAAAGGTTCTGAT---CATCG-TAT---CT--A-GAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGAC-ATTGCATAA--GC----------T-CGA-------GCCT-GCA---TT---GTCGGT--CA----AT-CC---GAGTCTTAGAGCTT----G-TAC---AAGA-TGA-TT---GAAA-AGT-TC-----TATTGG-TAG-ATTTT----TAACT-ATCTTTG--AATATTC---ATGGCG-AGA----CT--------TCGATTCTGCATG--TCGACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGT--TCA-TTTC--GCATACTGAA---CAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCA--AAAACGGC--CATA------TTTCTA-TATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
Reference ( family-3492 ) : NCTGTTNACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTN-GA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAGTG--CCA-C----------AATAC-GAC----A---AA-TATTTAA-GTC-------GGGGGG-GGG-GGGTGT---CCC---CA---ANAAATTTTGAAATAA--TACAATG-------AAAGTAAC-CTTA--TCAG--TT-TAGACT-G-ACT-AGAC-AGACTGAAAA-GACGGGTAAAATGTTGGAC-TAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATNCT--ATTTTTT-GTAATAC--GTATGTCCAATGATCTAAGATTGGAACG-A-TCAA-GTC------ATTCTTTTTGGT-CCC-AAGAAATTTTGAAATAATACA-TTG-------AAAGTAACCTTATTAG---------TTTAGACTA-----GACAGACTGAAA-----AGACAGGTAAAATGTTGGACAAGGTT--ACACATTT--TCAATGAA-ATC--T--GAGAAT-TA-----TACT--------ATTTT---------------------TT-GTAATATG--T--CCTTT-CAACGATCCAGTGATTTCACACTAACAGCATNTTAA---CG-T-C-CTACCA-TAGACACT-CTGAATCTAG--------AA-C-CTCGTTCG---GGTTCTGAT---CATCG-TAT---CT--A-GAC-TGGCCAGGG-ACAAATTCATG-TTCGC-AAT--CAGCTGAC-ATTGCATA---GC----------T-CGA-------GCCT-GCA---TT---GTCGGT--CA----AT-CC---GAGTCT-AGAGCTT----G-TAC---AAGA-TGA-TT---GAAA-AGT-TC-----TATTGG-TAG-ATTTT----TAACT-ATCTTT---AATATTC---ATGGCG-AGA----CT--------TCGATTCTGCATG--TCGACGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGT--TCA-TTTC--GCATACTGAA---CAACAA---ACAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTAGTCA--AAAACGGC--CATA------TTTCTA-TATAAGAATCTT-TAAAC--CTAA-----GTGAA-AATGT---------ATTGTTT-C-TCAGTTGATTCA-CCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGCCGC-ATC-----TCGACTAGC-AGC-AT--GCTGNATTCA-------ACANTNCAAACCGCTCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTCGCGTTAAA-CGNACG-CTT--TG-CTGATC-GA-TTCAGATC-GTTCAC-ATTAACATTT------AAAATCGGAATTCTTGTACNAAAAAAACTGAAT--TTTTTCCGGATTTTA-TTTTTACCGTAACGTTAC-CACCGACGACCGTTAAACGTATTTTTT--GCCTTTCT
gi|1 : CTGTTTACCT--AACGAAGC-TGCCAGTAAGATTTTCTTG-AA-TTTTA-GA-GTTT--GTCA---------GTACA---------A-TAACCA-GCGAGTGGCTCA-CT---------AATAC-CAC----A---AA-TATTTTA--TC-------GGAGGGAGGG-GGGTGT---CCC---CA---GGAAATTTTAAAATAA--TACA-TG-------AAAGTAAC-CTTA--TTA---TT-TAGATT-G-ACT-AGAC-A-ACTGAGAATGACAGGTAAAATGTTGTACCTAGGTTTTACACATTTTCAATGAA-TCTG-----AGAATATTCT--ATTTTTTTGTAATACATGTATGTCCAATGATCTAAGATTG--ATG-A-TCAAAGTC------ATT-TTCTTGGT-CCA-AGGAAATCTTGAAATAATACA-TTG-------AAGATAAC-TTATTAT---------CTTAGACTA-----G-CAGACTGAAA------GACAGGTAAAATGTTGGACTAGGTTTCACACAATTAATGCATGAACATC--T--GAGAAT-TA-----TACT--------ATTTT---------------------TTTGTAATATG--T--CCTTT-CAACGATTCAGTGATTTCACACTAACAGCATGTTAA---TGGT-C-CTACAG-TAGAC-CT-CTGAATCTAA--------AA-C--TCGGTCT---GAT-CTGA----CATCGCTAT---CT--AAGAC-TGGCCAGGGGACAAATTCATG-TTCGC-AAT--CAGCTGAC-ATTGCATA---GCATTGCATTAGT-CGGTCACTATGCCTTGCA---TTC--GTCGGT--CA----AT-CC---GAGTCT-AGAGCTT----G-TAC---AGGA-TGA-TT---GAAA-AGT-TC-----TATTGG-TAG-ATTTT----TAA---ATTTT-----ATATTC---ATGATG-AGA----GTCAGAGATGTCGATTCTGCATG--TCAACGGCAATCATTCCTT-CCCCGTG-GC--A----T--GCGA----AGT--TCATTTTC--ACATACTGAA---CAA-AACCCACAT--A--CCTTTCAC--C-T--TGGAC----------G---ATTAGTCA--AAAACGGC--CATA------TTTCTA-TTTAAAAATCTT-TAAAC--CTAT-----GTGAA-AA--T---------ATTGTTT-C-TCAG-TGATT-A-TCAGTTGAGT--AAATTTCCGTCAA-----TAGAC----------TCTCTGC--C-ATC------CGACTAGC-AGC-AT--GCTGGATTCAT------ACATCTCAA-----TCTT-TAAAAATGTT-TG-AATCA-ATAACACTTTTTGCGTTAAA---TACG-CTT--TG-CTAATC-GA-TTCAGATC-GATCAC-ATTAACA-TT------AAAATCGGAATTCTTGTACAAAAAAAAAAGAAT--TTTTTT----TTTTA-----TACCGTAATTTTACGCA-CGACGA-CG-TACAAGT-TTTTTT--ACCTTTCT
gi|10 : aTTT----TAACT----TTT---AATATTC---ATGGTG-AGA----CT----------GATTCTGCATG--TTGACGGCAATCATTTCTTTTCCCGTGCGC-AAC---T--GCGA----AGT--TCA-CTTC--ACATACTG------AACGA---ACAT--ACCCCTTTCGC--CTT--TGGAC----------G---ATTAGTCA--AAAAC
gi|11 : -CCC-AAGAAATTTTGAAATAATATA-GT---------ACCTAACCTTATTAGACAACTCAGTTTAGACTA-----GACAAACTGAAATGATAAGACAGGTAAAATGTTGGACAAGGTT--ACACATTT--TCAATGAA-ATC--T--GAGA
gi|12 : gttgCTGTTTAACCTAAACGAACACTGTCAGTAAGATTTTCC-G-A
gi|12 : ac-TGTCA---------GTAAG---------A-TTTTC---CGA-TG--CCA-C----------AATAC-GAC----A---CA-TATTCAA-GTC-------GATGGG-GGG-tgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|12 : acctgtttaacctaaacgaacacTTGGAC-TTGGTT--ACACATTTTCAATGAAATCttaaagtaaccttgtttggacttggttacacattttcaatgaaatc
gi|13 : acctgtttaacctaaacgaacactgtcagtaagattttccgatgccacaatacgacacatattcaagtcgatggggggttaaagtaaccttgtA-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCAAGTGAGTG--CCA-C----------AATAC-GAC----AT--AA-TATTTAA-GTC-------GGGGGG-GGG-GGGTGG---GGGGGGCA---ATACATTTTGAAA-AA--CACAATG-------AAAGTAAC-CTTA--
gi|14 : A-GTTT-TATCAATGCATTGAGTACA---------A-GCACCA-GTAAGTG--CCA-C----------AATAT-GGCTCTTATTTAA-GATTCAA-GTCAGAAGGGGGGGGG-GGG-GGGGGTACCCCC---CA---ATAAATTCTGAAAa
gi|15 : CGA----AGT--TCA-TTTC--ACATACTGAA---CAATAA---AAAT--A--CCTTTCGC--CTT--TGGAC----------G---ATTGGTCA--AAAACGGC--CATA------TTTCTC-TATAAGAATCTT-TAAAC--CTAA-----GTGAA-A
gi|16 : AATCATTCCTTCCCCCATGCGC-AAATTAT--GCAA----AGT--TCA-TTTC--GCATACTGAA---CAATGA---ACAT--A--CCTTTCAC--CTT--TAGAC----------G---AT
gi|17 : AAAAAACTGAAACATTGTTCCGGAGGTT--TTTTTACC----CGT-AC-CACCTACGACCGTTAAACATTTTTTTTGGGTCTTTCT
gi|18 : AA---CAACAA---ACAT--A--CCTTTTGC--CTT--TTGAC----------GATTATTAGTCA--AAAACGGC--CATA------TTT-TA-TATAAGAATCTT-TAATC--CTAA-----ac
gi|2 : TTTTACACTAA-ACCAT---AA---CA-A-C-ATGCCA-CAAATACT---GAAC------------AA-TTCTGGTGCG---GATCTTGAA---CATCA-TAT---CT--A-GACATGGCCAGG--ACAAATGCAT--TTCGCGAAT--CAGCTGACAATTGCATAAAGAC----------T-ATT-------ATCT-GCAATGTTAGCGTCGGTACCAAAATAC-CCAAAGAATAC-AGAGCTTTGAAG--ACAAAAAGA-TGA-TTGAAGAAA-AGTATCTCATATATTGGATAGTATGTTATGGTAACC-ATCTTTA--AATATGCGAGATAGAGTAGACTATCT--------TTGATTCT-CATGTATAAACAGCAATCATT-CTTCCCGC-TGGAC-AA----TTCGCGA----AGTTCTCA-TTTCGAGCATATAGAACACCAACAC---ACATCAA--CCCTACACAGCGTGATGGATAGAACTATAAG---ATTTTTCAACAAAACTGCTTCAAATGGACTTTTCAATTGTACGAAACTTGTAAACATTTAATTCATGTAAC-AATATTTCGTAACGATTATTTGCGTCA-TTGATTCAGCC--TTGAATCCAA---TCAGTCAAGAAAGTAAA-----------TTTCTCCTG----C-----TCGACTAGCAAGCAATTAGCTGCATCCAAAGAACGACAATACAAACTGCTCTTATAAAAATGTTATGTAATCAGATAAAACTTTTC-TAATAAA-CGCACGACTTAATGACTGATCAGACTTCAG-TG-TTTCACTATTA--TTTT------AACATTG
gi|20 : gtGG-GGG-GGGT------CC---CA---CTAAATTTTAAAATAT--TACAATG-------AAAGTAGC-CTTA--TCAG--TT-TGGACT-A-Attgatgagtgaagtcgagcaaattatattggttaacaaactcaaataaaaaaacacgcaattttttttt
gi|21 : CTGCATG--TCGTTGACAATCAGTCCTTCCCCCGTTTGCAAA----T--GTGAATTTAGT--TCA-TTacaaatgcaaa
gi|22 : cttagattctgcagaCTGTTTACCCAAAACGAAGCCTGTCAGTAAGAGTTCCC-A-AATTTTTA-GA-GTTT-TGTCA---------GTACA---------A-T
gi|23 : gcTTT--TCAATGAA-ATC--T--GAGAA--TA-----TATT--------ATTTT---------------------TT-GTAATATG--TAACCTTT-GAACGAT
gi|25 : GACGACCGA-AAACGTATTTT-T--GCCTTTCTtgac
gi|26 : --CA----AT-CC---GAGTCTTAGAG---------TAC---AAAA-TGA-TT---GAAA-AGT-TC-----TATTGG-TAaccgtaagaaatacggtgaaaacgg
gi|27 : CTGTTAACCCTCAATGAAGCCTGTCAGTAAGATTATCT-G-AA-T
gi|28 : gacCTGTTAACCCTCAATCAAGC-TGCCAGTAAGATTCTCT-G-AA-TTTT
gi|3 : -CTACCAGTAGACACT-ATGAATATAG--------AAAT-CTCATTCGAAAGGTTCTGAT---CATTG-TATAGACTGAA-CAC-TGGCCTGGG-ACAAAGTCATG-TTTGC-AAT--CAGCTGAC-ATTGCATAA--GC----------TTCGA-------GCTT---A---TA---GTCAGT--CA----ATACC---GAGTCTTAGAGTTT----GGTAC---AAGAATGA-TT---GAAACAGT-TC-----TATTGG-TAG--TTTA----TAATTTATCTTTGTTAATATTC---ATGGCG-AGA----CT--------TTGATTCTGCATG--TCGGCGGCAATCATTCCTTCCCCCGTGCGC-AA----T--GCGA----AGT--TCA-TTTC--ACATACTGAA---CAACAA---ACAT--A--CATTTCGC--CTT--TGGAC----------G---ATTAGTCA--AAAACGGC--TACA------TCTCTA-TATAAGAATCTT-TAAGA--CCAA-----GTGAAGAATGA---------TTTGTTT-C---AGTTGCTTCA-CCAGT-AAGT--AAATTTCCGTTAA-----AAGACATCTCTCGATTCTCTGTCATGATCAGTCATCGACTAAC-AGC-AT--GCTGTATTCA--------TACTCTAAATCGTT------AAAATGCT-TG-AATCA-ATAACAC--TAAAGGTGAAATCAAGCG-CTT--TG-CT-----GA-TTCAGATCGGTCCAC-A-TAACATTTGATTTAAAAATCGGAATTTT--TACCAAACAAACTGAAT--TTTTTCCGGATTTTATTTTTTACCGTAACATTAC-CACCGATGACCGTTAAACGTAATTTTT--GGCTTTCT
gi|31 : ttaatgtcaacttttcagctcttcaCTGTTTACCCTAAACAAAGCCTGTCAgccgtaaaaaatacggtgaaaacggaagagtaaacaggtc
gi|4 : acCTGTTA--CCTAA-CGA-GCCTGTCAGTAAGATTTTCCCG-AA-TTTTA-GA-GTTT-TGTCA---------GTAC----------A-TCACCA-GCGAGGT--CCACC----------AATAC--AC----A---AATTATTTAA-ATC-------GGTAGG-AGG-GGG-GT---CCC---CA---AGAAATTTTAAAATAATTTACATTG-------AA---AACGCTTA--TTAG--GTATAGACT-G-ACTGAGAC-AGACTG-AAA-GACAGATAAAATGTTGGACGTAGGTT--ACACATTTTCAATGAAATCTG-----AGAATATTCT--ATTTTTT-GTAATAC--AGATGT-CAATGATTTAAGATTGGAATG-A-T-AA-GTC------ATTCTTTTTGGTACCC-AAGAAATCTTGAAATAATACATTTG-------AAAGT-ACCTTATTA----------TTTAGACTA-----GACAGAATG-AA-----ATACAGGTAAAATGTTGGACAA------------TT--TCAATGAA-ATC--T--GAGAAC-TAT----TACT--------A-TTT---------------------TT-GTAATATG--T--CCCTTGCAACGATCCAGTAATT---CAATCA-AGCACTTTAA---TG-T-CACTACCA-TAGACACTATTGAATC-AG--------AA-CACTC--------GGTTCTGATCGACATCG-TAT---CT--A-GAC-TGGCCAGGG-ACAAATGCATGATTCCC-AATGGCAGCTGAC-ATTGCATA---G-------------CAA---------TT-GCA---TT---ATCGGTC-CA----AT-CT---GAGTCT--GAGCTT----G-TAC---AA-A-TGACTT---GAAA-AGT-TC-----TATTGG-TAG-A
gi|5 : gacACTTTCAATGAAGCCTGTCAGTAAGATTTGCAGAATTTTTC-G-AGTTT--GTCAGTACAATCACCAGAGAGTGCCACATACTCAA-GTCGGGAAGATCC---------CCC-ATGAAATTTTGGAATAATACA-CTGTACATCAAAAGTAACCT-ATCAG---------TTTAGACTACACTAGACAGACTGAAA-----AGACAAGGAAATTAATGGACAAGGTTACACACATTT--TCAATGAA-ATC--TGAGAGAATATA-----TACTTTTGTCCAATTTTTTTTTTTTTTTTTTTTGCTTTTT-GCAAAATGTCT--CCTTT-CAATGATCCAGTGATGTTA-A-TAACAAC-TTTTGAGCTCT-TCC-CTACCATTAGACACT-CTGAATTTAGAATATGGAAA-C-CTCATTCGAAAGGTTTTGAT---CATCG-TA-----T--A-GA------CAAGG-ACAAATTCTTG-TTCAA-AAT--CAGCTGAA-ATTGCATA---GC----------T-
gi|6 : gacccgtttCTGTTTACCCTAAACGAAGCCTGTCAGTAAGATTTTCC-G-AA-TTTTTAGA-GTTT-TGTCA---------GTACA---------A-TCACCA-GCGAACG--CCA-C----------AATA------------------TTTAA-GTC-------GGGGGG-G--------------C---CA---AGAAATTTTGAAATAA--TACTGTA-------ACAGTAAC-CTTA--TTAG--TT-TATTTA-G-ACT-AGAC-AGAC----------GTGTAAAATGTTGGAC-TAGGTT--ACACATTTTCAATGAAATCAA-----AGAGTATACT--A-TTTTT-GTACTAT--GT---TCC------CT----TT-GAACA-A-TCCA-GTC------AT--TTTTTGAT-CCCTAAGAAATTTTGAAATAATACA-TTGA------AAAGTAACCTTATTAG---------TTTAGATTA-----GACAGACTGAAA-----AGACGGGTAAAATGTTGGACAAGG-T--ACACATTT--TCAATGAA-ATCAAT--TAGAAT-TAGAATGTACT--------A-TTT---------------------TT-GTAATATGA-C--CCTTT-CAACGATCCAGTGATTTCAt
gi|7 : acGATTTGCA-G-AA-TTTTTCGA-GTTT--GTCA---------GCACA---------A-TCACCA-GAGAGTG--CCA-C----------AATAT-GGC----A---CA-TACTCAA-GTC------------T-GGA-AGAT-C---CCC---CA---TGAAATTTTGGAATAA--TACACTGTACATCAAAAGTAAC-C-TA--TCAG--TT-TACACTAG-ACT-AGAC-AGACTGAAAA-GACAGGGAAATTATTGGAC-AAGGTTACACACATTTTCAATGAAaat
gi|8 : CTGTTAACCCTCAATTAAGCCTGTAAGTAAGATTATCT-G-AA-TTTTT--A-GTTT-TGTCA---------GTACATTGAGTACAA-TCACCA-GTGAGTG--CCA-CAAATGCCCACAATAC-GAC----A---CA-TATCTAA-GTG-------GGGGGG-GGG-GGGTGT---CCC---CA---ATAAATCTTGAAACAT--TGCAATG-------AAAGTAAC-CTTA--TCAG--TT-TA-----G-ACT-AGAC-AAA
gi|9 : agacATTTTCA-GCAA-TTTCT-GAAGTTTCTGTTAA--------GTACA---------GGTTATCA-GTGAGTG--TCAGC----------AATACTGGC----A------CACTTAACATC-------AGGAGG-AGGCGGGCAT---CCC---CCCTTAAAAGTTATAAAATAAC-T----TT-------AAAATA---CTTAAATCATCTTT-TAGACT-ACACT-AGACCAGACTGAAAA-GACGG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): GCAGCATAATGTTTGAAGTTGGGGGGGGGGCGGGGGGGGGGGTCAGCTACATTATGAACGACACACTGGAAAT
Unaligned ( gi|24 ): TTTTTTGCCTTTCTACCGTAAGAAATACAGTGAAAACGGAAGAGTAAACAGGTCTGT
Unaligned ( gi|29 ): CGTAAGAAATATGGCGGAAACGGAAGAGTAAACAGATCTGA
Unaligned ( gi|30 ): CGGTGAAAACGGAAGAGTAAACAGGTCTGTC