lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 22222222222222222222222222222 111111 111 77777777777777777777777777777777777777777777777777777777777777 11111 111 222222 11 11 44444444444444444 1 1 666666666666666666 44444444 111 1111111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 222222 11 111 1 111 33333 222 1 7777777777777777777777777777777 1 22222 1 1 1 2 1 55555555555555 5555555555555555555555 2222222 1 2222222 2222222 22222 11 77777777777777777777777777777777777 111 11 111 222222 66666666666666666666 1111 33333333333333333333333333333333333333333333333333333333 111 555555555555555555555555 222222 44444 111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 1 222 1 222 44444 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 22 11 44444444444 4444 444 1111 22 22 111 3333 1111
lowQualScore : 4 9999999 55 00000000000000000000000000000 222222 55 7777 4 777 222 8 44444444444444444444444444444444444444444444444444444444444444 00000 77 5 77 555 666666 3 11 8 33 66666666666666666 0 3 3 999999999999999999 7 88888888 777 7777777 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 999999 3 33 777 3 0 666 88888 666 3 3333333333333333333333333333333 7 6 33333 1 0 0 0 7 3 5 0 0 22222222222222 2 3 3333333333333333333333 5 8 2222222 2 6 3 1111111 8 3333333 8 33333 8 99 8 0 0 8 0 33 0 44444444444444444444444444444444444 444 11 444 8 8 55 8 888888 8 22222222222222222222 0 5 7777 00000000000000000000000000000000000000000000000000000000 444 2 8 888888888888888888888888 8 444444 8 22222 444 8 8 0 8 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 888 88 3 777 3 333 44444 3 3 666 6 3 3 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 88 55 99 99999999999 6 1111 5 222 99 99 3 6 4444 6 99 6 6 66 99 888 4444 7777
lowQualScore : . ....... .. ............................. ...... .. .... . ... ... . .............................................................. ..... .. . .. ... ...... . .. . .. ................. . . . .................. . ........ ... ....... ..................................................................................................................................................................................... .. ...... . .. ... . . ... ..... ... . ............................... . . ..... . . . . . . . . . .............. . . ...................... . . ....... . . . ....... . ....... . ..... . .. . . . . . .. . ................................... ... .. ... . . .. . ...... . .................... . . .... ........................................................ ... . . ........................ . ...... . ..... ... . . . . . ......................................................................................................................................................................... ... .. . ... . ... ..... . . ... . . . .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. . .. .. .. ........... . .... . ... .. .. . . .... . .. . . .. .. ... .... ....
lowQualScore : 4 8888888 55 77777777777777777777777777777 444444 00 7777 9 000 666 0 33333333333333333333333333333333333333333333333333333333333333 11111 99 7 44 777 000000 2 00 0 88 00000000000000000 0 2 3 333333333333333333 3 77777777 777 0000000 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 000000 2 88 555 2 0 222 11111 333 3 7777777777777777777777777777777 3 0 33333 0 0 0 0 8 2 0 0 2 00000000000000 5 2 5555555555555555555555 6 0 2222222 8 0 8 2222222 0 8888888 0 88888 0 00 0 8 8 0 8 44 8 22222222222222222222222222222222222 000 88 000 0 0 88 0 888888 0 44444444444444444444 8 6 8888 55555555555555555555555555555555555555555555555555555555 555 5 0 222222222222222222222222 0 000000 0 22222 888 6 0 6 0 8 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 777 33 3 333 3 333 77777 3 3 777 7 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 22 88 00 22222222222 7 7777 7 777 22 22 2 7 2222 7 22 7 7 55 22 333 4444 5555
consensus : ATGACC-ATAAAACAATAAAA-TTC--TCAG-ACA-A----AA-T---T-----------TCGT--TTC--TCAGAA----TAAAAAA---TAA--TTCTC-AGCTTG-------AG-----AACTT-CA--TAT----AAAA---AT----TGGAGAGA-C--AT--AAACA-GACTT--GAGA-ATT-TT---CTT---AG-CTGAGAAA--AAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACAGC-G-TAT-CTAA-GCT-GATTTTGGAACT--CT--T-CCGTAA-T-ATAA-G-GTA-TAAAAAAA-------AACAT-AANCAAC------A-TA----------TGA---AANA-GGCGG-C--------------CA---TC-CT--TTTT---TCCGGGGGG-GG-GGGGGG-GGT-T--A--ACAACGCAC-GACGC-TAATAGGAAA-TGTN--T-ACTTTG-AATTT----CCCTNNCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--TT-CACAT-A-CAT-GTA-TA--------G--CTA-CACA---A-----TTTGATACATA-TTCTA--AA-TCG-TTTG-AT-C-CACCACTCAATCT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GTATTA-G--CT-CT-AA-TTCTCTATTCTAAAA-GTAAC-TTTCAACTT-AAAT-----ATCT-A------------ANCCATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---A--AAGGTCAA-GGCC------G--G-GT------GCAGACGATGGA---TGTTGTTG--TCG--TTACAA-A--TTAAT-AT--A--GA-GATATATCCA--TAGGTGAA-G-GGACC--CGAGTGCAA-TATG--AN---------AG----C----C-ATT--T---AGGTAAAGTT-TA--A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--C---NTTAT----ATTACC----CCCCCCCC--CCAAGGCTTTCCT-TTAAA----AT-GTTTA--TCAATACT-------TACTTAG---G-ATG-T-TTGNA--A-ATAAAGCCTAAAAAAAA--GAA-AA--TTAACAG-CA---ATTCTCCTAAA---C-CT-TCCA-TTATNTTGTGT-GC-AACATC--T-CCA-CGGGGG--A--AAAC-G--CGAAAAG--GC-------AA-T-CG-AGGTAGCC--CACCGCCG--GC--CCCG-A-ATTT-CC--TCCCGGCCCGCAG--TTCTC--GAA-AT-NTTCA-AACC-GTCA------------CCCGATCGAGC------GGTTGTATG-GA-TC-GGT-TA-GGTTGCG--AAATC-TC--AAGCAC---AGNA--AGCAGTGACAGTATGGGTGACGACCAAGGCCATAAT--TTCCTCCTTCA-AATCCCCCTGGATTGATCACGGGACATGGAACACCCCNCCCCCCTGTCGGGATCGGGANACACGN-T-TCGAC-TC-AATAAA--G-CC-A--AGGG--AT-CCGC-GC-GGTCCC--GAA-ACACC-CGCGGG-GCAAG-T-AAAG---------CCTTGCC-GAT--ACTCNTCG--TATTTC-----------GTTTTAC-----AG-T--GTACA-A-CAGT-AG-CCA-TT---CTTGTTT-TTGAG-AACAAAA-AAAA---C--T---ATACTT-AAGTCT-TGC---TA-TGA-A-CCAAACTTAA--G-A-TTTTTTTC-ATTCTTGGA-GTA--CGAAATTTGT-CTGAG-AATGTTTT--ATGG-TCTCACAA-ATTTTTCTCA-ACTTG-GAAGAAAAATAT-AGAA--ATT--CTGAGA-AAAAA----CA-T--GAG-TT-GAGAAT-TTTTTTTTGTCT---GAGAATTGGTTTTATTGGTGTCAT
Reference ( gi|2 ) : ATGACC-ATAAAACAATAAAA-TTC--TCAG-ACA-A----AA-T---T-----------TTGT--TTC--TCAGAA----TAAAAAA---TAG--TTCTC-AGCTTG-------AG---TGAACTT-CA--TAT----AAAA---AT----TGAAGAGA-C--AT--AAACA-GATCT--GAGA-ATT-TT---CTT---A--CTGAGAAA--AAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACA-C-G-TATGCTAAAGCTTGATTTTGGAACT--CTTCTGCTGTAA-T-ATAA-G-GCA-TAAAAAAA---AGG-AACAT-AAGCAAC------A-TA----------TGAT--AACA-GGC---C--------------CA----------TTTT---TCCGGGGGGGGGGGGGGGGGGGT-T--AA-ACAACATAC-GATGCATTATAGAAAA-TGTT--T-ACTTTG-AATGTCCCCCCCCCCCCCCAACGCATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--GT-CACAT-A-CAT-GTA-TA--------G--CTA-CACA---A-----TTTGATACATATTTCTA--AAGTTG-TTTG-AT-CACACCACTTAATCT-AAGGCGAGGACTCA-AT-CTGCTTCAGTTGAATACCAT-CAGAGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTCT-TTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GTATTT-G--CT-CT-AA-TTCTCTATTCTAAAA-GTAAA-TTTCAACTT-AAAT-----ATCTGA------------ATCTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---A--AAGGTCAA-GGCC------G--G-GT------GCAGACGATGGA---TGTTGTTGAAACA--TTACAA-A--TTAAT-AT--ACGGA-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATG--AT---------AG----C----C-ATT--T---AGGTAAAGTT-TA--ACTCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--C---ATTAT----ATTACC----CCCCCCCC--TTAAGGCTTTCCT-TTAAA----AT-GTTTACTTCAATACTAGCGCCTTACTTGG---GCATG-T-TTGCA--A-ATAAAGTCTAAAGGAAA--GAA-AA--CTAACAG-CA---ATTCTCCTAAA-TTC-CT-TCCA-TTGTTTTGTGT-GC-AACATC--T-CAA-CGGGAATTATTAAAC-G--CGATAA---GC-------AA-T-CGCAGGTAGCC--CACCGCCGCGGCT-CCCG-A-ATTT-CC--TCCCGGTCTGCAG--TTCTC--AGA-AT-ATTCAGAACC-GTCA------------CCT-ATCAAGC------AGTTGTGTATGA-TCAGGTCTACGATTATACAAGATC-TCCTAAGCAC---AGCACTAGT--TGACAGTATGGGTTGCGA--AAGGCCATAATAATTCCT-CTTCATAATCC---------GATC-CGA-------------CTACCCACCTGTCG-AATCGCGTTATTCGC-T-TCGATGTC-AATAAA--G-CC-A--GGGG--AT-CTGC-GC-GGTCCC--GAA-ACACC-CGCGGG-GCAAG-T-A------------CCTTGCCGGAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG-T--GTACA-A-CAGTTAG-C-A-CT---CTTGTTT-T-GAGCAACAAAA-AAAA---C--T---ATACTT-A-GTCT-TGC---T--TGA-A-CCAAACT-AA--G-A-TTTTCTTCTATTCTTGGA-GTA--GAGAATTTGT-CTGAGGAATCTTTT--ATGGACCTCACAAGATTTTTCTCA-ACTTAGGAAGAAAAATATTGAAA--ATT--CTGAGA-AAAAA----CA-T--GAG-TT-GAGAATGTTTTTTTTG-CT---GAGAATTAGTATTATCAGTGTCATT
gi|3 : ATGACC-ATAAAACAATAAAA-TTC--TTAG-A-A-A----AA-T---T-----------TTGT--T-C--TCAGAA----TAAAAAA---TAA--TTCTC-AGCT-G-------AG-----AACT--CA--TAT----AAAA---------TG----GA-CCAATC-AAACA-GA-CT--GAGA-AT-------CTT---AG-CTGA--AA--AACAG-CC--CT----CGT--C-T-----AGAACT-TTTTTC--CAC-ACGCCAAC-GGTAT-CTAA-GCT-GATTT-GGAACT--CT----CTGTAA-TGATAA-GAGTA-TAAAAAAACATAGCCAACATTAAACAATCTCGAAA-TA----------TGGCCCAAGA-GTCGG-C--------------CA----------TTTTATTTTCGGGG------GGGGGGGGGTGT-----ACAA------GCCGTATCATAGAAAAGTGTTG-T-ACTTGA-AATTT-------TTTCCCCAAAACATGAAAGG-A--A-ATA-TCAGA--AAGTCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--TTCCACATAA-CAT-GTA-TA--------G--CTA--ACAATTA-----TTTGATACATA-TTCTA--A---TGCTTTG-ATCCAC-CCACCAATTCT-AAGGAGA----TCA-AG-TCGCTT-AG-TGAATACCAT-CAAGG--AAGTA---TTAAATT-AGTCGG---CCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GTATTA-C--CT-CTCCA-TTCTCTA-TCTAAAA-GT-AA-CTTCAAC------------------------------------T---TATTTCGAACA--TTTAA---AA-A-TGAT-CAGGGA-ATTATC---AATAAGGTCAA-GGCC------GGTG-GT-------CAGACGATGG----TGTTGTTG--TTG--TTAT-A-A--TTAAT-AT--A-GGA-GATATA-CCA--TAGGT-AA-G-GAGCC--TGA-TGCAA-TATGAAAT---------AGAAAAC----C-ATT--T---AGGTAAA-TT-TA--A-TCTAAT--CT--A-AAAAGA-A-TCT---------------GTACAT----GAAATGGA---TTAGT-----GG---A--TAGAATTAT----ATTGTCCTTGCCCCCCCC--TTAA-GCTTTCCT-TTAAA----AT-GTTTA--TCAA-A---------TACTTAG---G-ATGAT-TTGAATGA-AT-AAGCCTAAAAAAAA--GAA-AAAGTTAACAG-CA---ATTCTCCTAAA---C-CT-TCCA-TTATCTTGTGT-GC-AACATC--TCCAACCGGGAA--AAAAAACGG--CGAAAAG--GC-------AATT-CG-AGGTA-TC--CACC-CCG------CCCG-A-ATTTCCC--TCCCGGCTCGCAG--TTCTC--GAG-ATAATTC--AACCTTTCA------------CCTGATCGAGCTATCAAGGTTGTATGGGA-TC-GGTATA--AT------AAATCATC--AAGCACCAGAGCA-------TGACA-TATGGGTGAC----AAAGCCATA-----TCCT-CTTCA-AATCCCCCTGGATTGATCACGGGACATGGAACACCCCCCCCCCCTGTCG-GATCG-G-TA---GCGT-TCGA--TCAAATAAATGG-CG-ATTGGCG--AT-C-GT-GC--GTCCC--GAA-ACCGC-CACGGG-GCCAG-TAA------------CC--GCC-AAT--A-TCAACG-----TTC-----------G--TTAC-----AGAT--GTAC--A-CAGTAAGCC-A-TT---C-TG--T-T-GAG----AAAACAAAA---CCAT---ATACTTAA-GTCC-TGC---TAATG--A-CCAAACT-AAATG-A-TTTTTTTC-ATTCT--GA-GTA--CGAAATTTGT-CTGAAGAA-CTTTT--ATGGTCTTCA-AA---TTTTCTCA-ACTT-TGAAGAAAAGTA---GAA--ATT--C-GATG-AAAAA----CA-T--GAG-TT-GAGA----TTTTTTTGTCT---GAGAAT
gi|1 : ATGACA-ATAGAACAATAAAAATTCACTCAGCACA-A----AAAT---T-----------TTGAAATTC--TCAGAAATCATAAAAAAACATAA--TTCTC-AGATGC-------AG-----AACTTACAAATATTAACAACA---AT----TTGAGACC-C--ATTTAAACA-GACTT--GAGA-ATAATTAAACTT---AGCTTGAGAAA--AAAAACAC--CCTAACCGATAC-CACTCGAGAACAATTTTCTTGCACCACGACA-CTG-TAT-CTAA-GCTGAAATTTTGAACTACCCTCT--CGTAAAT-TTAACG-GTAATAAAAAAA-----G-AT--T-CAGCAAC------A-TA----------TAA----ACATGGC---CCCAAAAGCGTCGGCCAAAATCTCTATTTTT---TCCGGGGGGCGGCGGAGCGCGAT-TGTAACACACCGCACCGATGC-TAATAAGAAA-TGGCCGT-ACTTTGCAATTTTTTTCCCCAA----AAAACATTTGAGGCACTACATATTCAGACAAAATCAACAAAAGGTTTTAAACAGGCTACTGTTCATCA--TTACACAT-AACATAGTA-CAATGACTAAG--CTA-CACA---AATACATTTGA--CATAATTTTACTAATTCG-TTTGCAT-C-CACCACTCAATCTCAACGGGAGA--TCA-ATTCTGCTTCAGTTGAA--------------------GTTTAAATTTAG-CAGGCCCCAATTCACCTTCTTTCTAAGTTTGT-ACGCTTTT-AGCCAATA------TTTTTGTATATAG--CTTCT-AAATTCTCTATTCTAAAAAGTAAC-TTTCAA-------------------------------AC--ATT---TATTTGAAGCA-CTTTTATTGAACA-TGA-GCAGCGACATTATTCAAA--AAGGTCAAAGGCC------A--GTGTCATTACGTAGACGATAGGCATTGTTGTTG-------TTACA-------------------------TATCCAATTAGG-GAA-GCGGACCACTGAGTGCAACTATG--ATCAGGGCGAAAG----C----CCATT--TTAGAGGTAAAGTT-TACAAATCTAACTCCTCAACGCAAGATATTCTCCTGACTTGAATATTGT---TATTAGACTTAAAGTAT--ATCATCTGAGGCA--C---TTTAGCAAGATTTCC----CCCCCCCCCTTTAAGGCTTTCCT-TTTAA----ATAGTTTAATTCAAT----------CACTTGGTAAGGATG-TGTTGCC--A-CTAAAGCCTAAAAGAAA--GAACAA--ATAACAGGCATAAATTCTCCTAAAACTCACTATCCACTTATATTGTGTTGCTAACA-A--T-CCA-C-------ATTAAAC-GAGCGAAAAAAAGC-------AAAT-CGAAGGTAGCC--ACCCGCCG--GC---CTG-ACATTT-CCCCTCCCGGCCTGCAGCTTTCTCGAAGATAT-TTTCA-AACC-GTCAACGAATCGATTGCTC-ATCAAGA------AGTTGTATG-GACTCGGGT--AAG-CTATA--AAATC-TCAAAAGCAC---AGAA--AGCAGTGACAGTATGGGT---GACCAAGGCCAT-AT--TTCCTCCTTCAatggtttgtatg
gi|23 : aATGACC-ATAAAACAATAAAA-TTC---GAG-AC-------AA-T---T-----------TTG---TTC--TCAGAA----TAacaaattcccccctggatttgcataacaacggacatgaaacaccaccccacctactccctgtcggaatcaggaaacacggtatcgaccaataaaggccgagggcaatctgttgacatcccgaacacacctcgcgggacaagtaaaccttgccagattcattcatcgattatctctacaatgtacaacatgtagccactcttgtttatgagacacaaaaaatatacttaagtcggtgcatatatgaatccaaacttaagcatttatttcattgctgaaagtaccgaaatttgtactgagaatctttttcatggtctcaacttttttctcatacttgagacaaaaaatatgaacattttctgagaaaaaaaaaacattcgagtttgagaatcttttattgtctgagaattgttttatggt
gi|9 : tGACC-ATAAAACA-------TTC--TCAG-AC--A----AA-T---T-----------TCG---TAC--TCAGAA----T
gi|9 : ttgtcgatatcatcgatttcgttacatgtacacagtagccatcttagcttgttttgagaacaaaaaaatatacttaagtctgctatgaaccaaacGACC-ATAAAACAAT------TC--TCAG-ACA-AAAAGAA-T---TCTCAACTCATGTTTT--TTC--CCAGAA----T--TTCA---TAGGTTTCTC-AAGTTG-------AG----------------------AAAA---AT----TT--GAGACC--ATA-AAACA-T-TCTCAGACA-AAT-TT---CGT---A--CTCAGAAtcaaatttttctcaacttgagaaacctatgaaattctgggaaaaaacatgagttgagaattctttttgtctgagaattgttttatggtc
gi|4 : ttgtcgatatcatcgatttcgttacatgtacacagtagccatcttagcttgttttgagaacaaaaaaatatacttaagtctgctatgaaccaaacaGACCGATAACACA-------TTC--TCAG--CACA----AA-T---T-----------TCGT--A-C--TCAGAA----TGAAAAA---AAA--TTCTTAAGTTTGGTCCCATAG---CAGACTT-AAG-TAT----AAAA---AT----T
gi|10 : cgaaatggaagccattaatgaggtaaagttatatctaaaggcaggagtccttatgaaatcttttatacccccccccccccaccccccggttaaatcaaatgccaaactgtttatttaatacttgtaggatactatgaaaatggaaaattaccagcaattctcccgaaagccctccatcactttattgcaacatccacccacgggggaaagcgatgaacatctctaaatgcgcatcaccaacaacgtcgccaccgcccgaaatttgcctaccagcagcatttcttgaaatgttgaggctgtctcccaattaacagctgggtcctccggttgcgcaaaaacctcagcatagtagtaaggaaacatgggagacagagccatgttctcttgtctccctctccagaatggtcatggatggcatcgtgtagatacaagatggtgcctcgccgaaatctgtaatctttcaaatattcgacatctcataagctaacggtatccactcggtctcggaacacccgtggaagcaggcaaagcctggaccgataccttcttgtttctacgtaaaagtctgtgcaggcagcccatttttatttttgcagaacaACC-ATAAAACAATAAAT-TCT--TCAG-ACA-A-------T---T-----------TTGT--T-C--TCAGAA----TAAAAAA---TAC--TTCTC-AGC-TG-------AG----GAACTT-CA--TAT------AA---AT----T---GAGA-C--AT--AAACA-GACTT--GAGA-ATT-TTC--CTT---AG-CTGAG-----AAAAA-AC--CT----CG-TACTT----GAAGACT-TTTTTTTtcaaatttttctcaagttgagaataaaataaaagaattctgagaaaaaacatgagttgagaattttgttatctagagaattgtttttattggtcat
gi|6 : tgaC-ATAAAA-----AAA-TTC--TCAA-TCT-C----AA-T---G-----------TTTT--TTC--TCAGAA----TTCTTTA---TTT--TTCTC-AACTTG-------AG-----------------------AAA---AT----TT--GAGA-C--AT--GAAAA-CATTT--CAGACAAT-TT---CGT---A--CTCAGAAATGAAAAA-A
gi|18 : tcatggatggctcgtagtagataccaagtatggtttgcctcgcccgaagatcatgtacctttcaatagcgctcaacatgtcataagctaacggattccactccggtctctcggaacactcgtggagcaggcaaagcctgacataccttctgtttctatgcgtaaacgtcttgtgcacagaccatttttatttttgagaacaaaatttctatacttaagtctgctatgaccaaacttaagaaC-ATACTACCATAAAA-TAC--TCAG-AAA-A----AA-T---T-----------TCA---TTC--TTGGAA----T-AAAAA---TAA--TTTTC-AGTT----------G---CGAAATT-CA--TCT----AGAATTCATGCCATGAAGAGA-tctttagagaattgtttttaatgggtcataggccct
gi|8 : AAAAAAG-TTC--TCAGTACA-A----GG-TGTTT-----------TTTT--TTC--TCAG-C----TAAAAGA---AAA--TTCTCAAGTCTGT------AGGTCTCAATTT-TA--TAT----GAAt
gi|13 : taattctcagctgagaac-----------TTTT--TTCATTCTGAG----TACGAAA---TTT--GTCTC-AACTTG-------AG---AAAA-----A--TAT----GAAA---TT----CGGAGAGA----A---AAACATGAGTT--GAGA-ATT-TT---TTT---ttgcacacgacagcggtaatcgaagctgattttggaactcttgctgtaatataaggtataaaaaaacatagcccacattaaactattctctgagaattggcaaaacacttttattttttttcctggggggggggggggtacaaacacacgatgctaatagaaatgtgtaactttgaatttttttccccccaaaacatttgaggaataatattcagtaaaacaa
gi|8 : ---TAA--TTCTC-AGCT-G-------AG-----AACTT-CA--TAT----AAAA----T----TGA---GA-C--CT--A--CA-GACTT--GAGA-ATT-TT---CTTTTAG--CTGAGAAA--AAAAA-ACACCT----TGT-AC-T----GAGAACT-TTTTTTTGCAC-ACGACAGCGG-TA-ATCGAAGC-TGATTTTGGAACT--CT--TGCTGTAA-T-ATAA-G-GTA-TAAAAA---------AACAT-AGCCCAC------ATTAAACTATTCTCTGAG--AATT-GGCAAAA--------------CACTTTTATTT-TTTT---TCCTGGGGGGGGGGGGGG------T--AC-A-AACACAC-GATGC-TAATAG-AAA-TGTG--TAACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGGAA-TA-ATATTCAGT--AAAACAAtttgtctgaaaattgttttatggtggt
gi|22 : CCCAAAACATTTGAAG-A-TG-ATATTCAGA--ACATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--
gi|5 : tttAACAAA---TTT--AA-AAGT---TGTTCATCAAAGT-AACAT-T-CAT-GTAATA--------GAGCTAACGCA---A-----TTTGATACATATTTCTA--AAGTCG-TTTG-AT-C-CATCACTTAATCT-AAAGGGAGA--TCACAT-CTGCTTCAGTTGAATA-CATGCAAGGAAAAAT-AGTTT--ATT-AG-CGT--CCCAATTCACTTC-TTTCTAAGTTTGTGG-----TTAAGCAACTA--------TT-GCAATT-AGCCT-CT-AA-TTCTCTATTC-AAAA-GTAAACTTTC--CTT-AAATA----ATCT-A------------AGCTATT---ATTTTGAAGCATTTTTTA---AA-ATTGATGCAGGGG-ATTATCA--A--AAGGTCAA-GGCC---------G-GT------GC-GACGATGGA---TGTTGTTG--TTG--TTACAA-AACTTAAT-TTTAACCGAGGATATATCCAT-TAGGTGAAGG-GGACC--CGAGTGCAA-TATG--AT---------A
gi|7 : -TTTG-AT-C-CACCACTCAAGAA-AAGG-GAGAGC--A-TT-CTGCTTCAGTAGAATATCAT-CAAGGAAAAATAAC----ACTT-TG----------ATTCACTTC-TGCCTAAGTTTGT-G-----AT-AGGAACTA------TTCC-GAATTA-G--CT-CT-TA-TTCTTTATTCTTAAG-GTAAC-TTTCAAATTAAAATTGTAAATCTGACACACGCAGCAGATCCATTTAATATTTGAAACC-TCTTTT---AA-A-TGATGCAAGGG-ATTTTC---C--AAGGTCAA-GGCCAATTCAG--A-GT-------CAG-CGATGTA---C-------AACCATGTTACAATA--TTAATCAT--A--------ATATT---------------GGACC--GGAGTGCAA-TATG--ACATACGGA--AG----CCATAC-ATT--T---AGGTAAAGTT-T----CT---GT--CTTAA-GAAGGA-GTTTT---------------G----T----AACTTGAT---T--AT-----Gt
gi|17 : TTAAATT-AA-CGG--CCCAATTCACTCT-TT-CTAAGTTTGT-G-----TT-AGCAACTACATGTATTTT-GTATTA-G--CT-CC-AA-TTCTCTATTCTAAAA-GTAAC-TTTCAAC
gi|16 : TT---TATTTGAAGCA-TTTTCA---AA-A-TGATTCAGGAG-ATTATC---A--AAGGTCAA-GGCC---------G-GT------GCAGCCGATGGA---TGTTGTTG--TTG--TTACAA-A--TTA
gi|14 : aagtaactttcaacA-TATG--AA---------AG----C----C-ATT--T---AGGTAAAGTT-TC--A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------G----T----GA-------------------------------ATTAT----ATTACC----CCCCCCCC--CCAAGGCTTTCCT-TTAAA----AT-GTTTA--TCAATACT
gi|4 : tatgATG--GA---------AG----C----C-ATTAATG--AGGTAAAGTTATA----TCTAA------AG-GCAGGA-GTCCT------------------------------------T--AT-----GA---AATC---TTT-T----AT-ACC----CCCCCCCC--CCCA--CCCCCCGGTTAAATCAAAT-GC------CAA-ACTG----TTTATTTA------ATA-C-TTGTA--GGATA----CTAT-GAAAATGGAA-AA--TTACCAG-CA---ATTCTCCCGAA-AGC-CC-TCCA-TCACTTTAT-T-GC-AACATCCAC-CCA-CGGGGG-----AAA--G--CGATGA---ACATCTCTAAA-TGCGCA--TCACCAACAACGTCGCCACCGCCCGAA-ATTTGCC--TACCAG-CAGCAT--TTCTT--GAA-AT-GTTGAG-GCT-GTCT------------CCCAATTAA-C------AGCTG-----GG-TC----CTCCGGTTGCGCAAAA---ACCTCAGCAT---AGTAGTA
gi|1 : cgaa-------------CTACTC-CCTGTCGGAATCAGGAAACACGG-TATCGAC--C-AATAAA--GGCC-G--AGGGCAAT-CTGTTGA-CATCCC--GAACACACCTCGCGGG-ACAAG-T-AAA----------CCTTGCCAGATTCATTCATCGATTATCTC---------------TAC-----AA-T--GTACA-A-CATGTAG-CCA-CT---CTTGTTTAT-GAG--ACACAA-AAAA------T---ATACTT-AAGTCGGTGCATATA-TGA-ATCCAAACTTAA--GCA-TTTATTTC-ATTGCTGAAAGTACCGA-AATTTGTACTGAG-AATCTTTTTCATGG---TCTCAACTTTTTTCTCATACTTGAGACAAAAAATAT-GAAC--ATTTTCTGAGA-AAAAAAAAACA-TTCGAG-TTTGAGAATCTTTTATTGT-CT---GAGAATT-GTTTTATaggaaacatgggagacagagccatgttctcttgtctccctctccagaatggtcatggatggcatcgtgtagatacaagatggtgcctcgccgaaatctgtaatctttcaaatattcgacatctcataagctaacggtatccactcggtctcggaacacccgtggaagcaggcaaagcctggaccgataccttcttgtttctacgtaaaagtctgtgcaggcagcccatttttatttttgcagaacaaatttttatacttaagtctgctatgggaccaaacttaagaattttttttcattctgagtacgaaatttgtgctgagaatgtgttatcggtctcaaatttttctcaagttgagaataaaataaaagaattctgagaaaaaacatgagttgagaattttgttatctagagaattgtttttattggtcat
gi|4 : aatgacaatagaacaataaaaattcactcagcacaaaaattttgaaattctcagaaatcataaaaaaacataattctcagatgcagaacttacaaatattaacaacaatttgagacccatttaaacagacttgagaataattaaacttagcttgagaaaaaaaacaccctaaccgataccactcgagaacaattttcttgcaccacgacactgtatctaagctgaaattttgaactaccctctcgtaaatttaacggtaataaaaaaagattcagcaacatataaacatggccccaaaagcgtcggccaaaatctctattttttccggggggcggcggagcgcgattgtaacacaccgcaccgatgctaataagaaatggccgtactttgcaatttttttccccaaaaaacatttgaggcactacatattcagacaaaatcaacaaaaggttttaaacaggctactgttcatcattacacataacatagtacaatgactaagctacacaaatacatttgacataattttactaattcgtttgcatccaccactcaatctcaacgggagatcaattctgcttcagttgaagtttaaatttagcaggccccaattcaccttctttctaagtttgtacgcttttagccaatatttttgtatatagcttctaaattctctattctaaaaagtaactttcaaacatttatttgaagcacttttattgaacatgagcagcgacattattcaaaaaggtcaaaggccagtgtcattacgtagacgataggcattgttgttgttacatatccaattagggaagcggaccactgagtgcaactatgatcagggcgaaagcccattttagaggtaaagtttacaaatctaactcctcaacgcaagatattctcctgacttgaatattgttattagacttaaagtatatcatctgaggcactttagcaagatttccccccccccctttaaggctttccttttaaatagtttaattcaatcacttggtaaggatgtgttgccactaaagcctaaaagaaagaacaaataacaggcataaattctcctaaaactcactatccacttatattgtgttgctaacaatccacattaaacgagcgaaaaaaagcaaatcgaaggtagccacccgccggcctgacatttcccctcccggcctgcagctttctcgaagatattttcaaaccgtcaacgaatcgattgctcatcaagaagttgtatggactcgggtaagctataaaatctcaaaagcacagaaagcagtgacagtatgggtgaccaaggccatatttcctccttcaacaaattcccccctggatttgcataacaacggacatgaaacaccaccccac-T-TCGACATCTCATAA---G-CT-A--ACGGT-AT-CCAC-TC-GGTCTC--GGA-ACACC-CGTGGAAGCAGG-C-AAAG---------CCTGGACCGAT--AC-CTTCT--TGTTTC---------------TACGTAAAAG-TCTGTGCA-GGCAGCC---C-A-TT---TTTATTT-TTG-----CAGAA-CAAA---T--TTTTATACTT-AAGTCT--GC---TA-TGGGA-CCAAACTTAA--G-AATTTTTTTTCATTCT--GA-GTA--CGAAATTTGTGCTGAG-AATGTGTT--ATCGGTCTCA---AATTTTTCTCA-AGTTGAGAATAAAA----TAAAAGAATT--CTGAGA-AAAAA----CA-T--GAG-TT-GAGAAT-TTTGTTAT--CTA--GAGAATTGTTTTTATTGGTggt
gi|19 : cgaaatggaagccattaatgaggtaaagttatatctaaaggcaggagtccttatgaaatcttttatacccccccccccccaccccccggttaaatcaaatgccaaactgtttatttaatacttgtaggatactatgaaaatggaaaattaccagcaattctcccgaaagccctccatcactttattgcaacatccacccacgggggaaagcgatgaacatctctaaatgcgcatcaccaacaacgtcgccaccgcccgaaatttgcctaccagcagcatttcttgaaatgttgaggctgtctcccaattaacagctgggtcctccggttgcgcaaaaacctcagcatagtagtaaggaaacatgggagacagagccatgttctcttgtctccctctccagaatggtcatggatggcatcgtgtagatacaagatggtgcctcgccgaaatctgtaatctttcaaata-T-TCGAT--C-AATAAA--G-GCGA--GGGG--AT-CTGT-CC-GGTTCC--GAA-ACACC-CACGGG-GCAAGCT-AGTAGACCTAAGTCCTTGCC-GAT--A-TCGTCG---ATTTC-----------GTTcat
gi|6 : ATGTC-A-TAA---G-CT-A--ACGG--ATTCCAC-TCCGGTCTCTCGGA-ACACT-CGTGGA-GCAGG-C-AAAG---------CCTGAC---AT--AC-CTTC---TGTTTCTATGCGTAAACGTCTT--------G-T--GCACAGA-C-------C-A-TT---TTTATTT-TTGAG-AACAAAA-----TTTC--T---ATACTT-AAGTCT--GC---TA-TGA---CCAAACTTAA--G-A-ATTTTTTC-ATTTCTG-A-GTA--C-GAAATTGT-CTGA--AATGTTTTC-ATG--TCTCA-AA---TTTTCTCA-AGTTG---AGAAAAATA--AAGA--ATT--CTGAGA-AAAAA----CATT--GAGATT-GAGAAT-TTTTTTATGTCTTTAGAGAATTGTTTTTAATGG-GTCAT
gi|9 : tcatggatggctcgtagtagataccaagtatggtttgcctcgcccgaagatcatgtacctttcaatagcgctcaacTTGTCG-AT--A-TCATCG---ATTTC-----------GTT--AC-----A--T--GTACA---CAGT-AG-CCATCTTAGCTTGTTT-T-GAG-AACAAAA-AAA-------T---ATACTT-AAGTCT--GC---TA-TGA-A-CCAAAC-------------------ATTCT--GA-GTA--CGAAATTTGT-CTGAG-AATGTTTT--ATGG---TCTCAA-ATTTTTCTCA-ACTTG---AGAAACCTAT--GAA--ATT--CTGGGA-AAAAA----CA-T--GAG-TT-GAGAA--TTCTTTTTGTCT---GAGAATT-GTTTTATaggccct
gi|13 : ACGAAATTTGTCTCA-ACTTG---AGAAAAATAT--GAA--ATT--CGGAGAGAAAAA----CA-T--GAG-TT-GAGAATTTTTTTTTTGTCT---GAAAATT-GTTTTATggtc
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): ACCCACGGGGAATGCGATGACATTTCTGAATGCGCTCACTAGCAACGTGGCCACCGCCCGAATTTCCCTACCAGCAGTATTCCTGGAAATGTTGAGGCTGTCTCCAATTAGCAGCTGGGTCGCTCCGGTTGCCAAAAACCTC
Unaligned ( gi|12 ): ACAATGCCATGTTCCTCTTTGTCTCCTTCTCCAAATGCCCCTGGATGGAATCGTGTAAATACAAAATAGTCCCCCGCCGAAATCTGTACCGTTCAAAAGGCTCCACATCGTCA
Unaligned ( gi|15 ): ATGGATGGCATCGTGTAGATACAAGATGGTGCCTCGCCGAAATCTGTACCTTTCAAATAGCTCAACATCGTCATAAGCTAACGGATCCACTCGGTCTCGGAACAC
Unaligned ( gi|20 ): TGACAAGGCCATATTCCTCTTCAAATCCCCTTGGATTGCATTACAGACATGAACACACCCCCTGTCGGAATCGGT
Unaligned ( gi|21 ): CAAGGTCGCCACGCCCAATTTTTCCTTCCGGCTGCCATCCCTAAATGTTACAGCTGTCTCCTATTAAAGCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111 1111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1111 111 1 1111 222222222222 11 2222222 11 11 2222222222222222 1 1111111 1 1 1 11 11 22222222 111 1 1 1 44444444444 1 222222 666666666666666666666666666666666666666666666666 66666666666666666 1 2 1 2222222 1 222 1111 11 111111 11 111 11 2222222 2 1 1 44444444444 11 22222 111 1 222 22 1111 11 1111111 11111 111111 0000000000000000000000000000000 111 111 111 4444444444444444444 1111 1111 5555555555555555 11 1111111 111 444444444444444444444444 1111 111111 2222222 111 22222222222222222222222222222222222222222222222222222222222 1111 111 2222222222 22222222 22 2222222 1 11111 11 11 1 111 1 111 3333333333 1 1 1 11 11 777777777777777777777777 333 111111 1111 111 11 333 11 1 222 111 11 999999999999999999999999999999999999999999999999999 111111 1 222222222 4444444 22222 1111 1111111111 2 555555555555555555555555555 1 444444444444 33333 1 22 111111 333333333333333 1 11 2222 55555555555555555555555555555 1111111111 1111 44444444444444 111 111 1111 111111 33 11111111 11 111 222 1111 1111 1 111 111 1 1
lowQualScore : 6 99 6 2 6 3 000 7 4444 111 2 5 99 6 99 4444 999999999999 5 11 0 0 7777777 11 8 5 8 11 1111111111111111 8 0 0 7777777 0 0 0 33 3 33 00000000 111 0 0 0 3 44444444444 3 0 1 888888 3 222222222222222222222222222222222222222222222222 55 77777777777777777 2 3 0 2 0 3 6 0 0000000 0 999 22 7777 11 777777 0 11 444 0 8 11 1111111 0 0 0 00000000000 22 55555 777 3 0 777 99 0 8 8 8 0 1111 1 5 11 8 8 6 0 8 8 8888888 3 6 999999 2 666 6 66666 6 999999 6 6 6 6 6 6 6 5 5 0 4444444444444444444444444444444 111 6 111 6 6 2 6 888 99 6 3333333333333333333 3 1 3333 9999 4444444444444444 0 99 3333333 555 6 999999999999999999999999 4444 6 888888 0000000 000 5 6 6 1 99999999999999999999999999999999999999999999999999999999999 0 7777 0 444 6666666666 99999999 0 8 22 8 88 6666666 8 0 55555 1 33 22 0 55 0 555 0 777 3333333333 0 1 2 0 0 3 33 33 2 888888888888888888888888 000 999999 3333 000 0 6 11 333 8 8 88 99 1 555 444 99 8 1 6 11 6 666666666666666666666666666666666666666666666666666 8 999999 0 888888888 2 6 3333333 77777 4444 77 6666666666 99 1 1 6 3 0 3 222222222222222222222222222 0 2 2 222222222222 8 22222 0 3 99 6 22 6 000000 99 6 6 6 111111111111111 1 5 1 77 88 1 0000 44444444444444444444444444444 9999999999 4444 7 6 6 6 88888888888888 999 111 6 4444 7 111111 5 5 66 5 77777777 5 5 6 55 6 6 999 888 5 5 222 1 1111 77 1 2222 5 5 77 1 222 1 555 5 3 5 5
lowQualScore : . .. . . . . ... . .... ... . . .. . .. .... ............ . .. . . ....... .. . . . .. ................ . . . ....... . . . .. . .. ........ ... . . . . ........... . . . ...... . ................................................ .. ................. . . . . . . . . ....... . ... .. .... .. ...... . .. ... . . .. ....... . . . ........... .. ..... ... . . ... .. . . . . . .... . . .. . . . . . . ....... . . ...... . ... . ..... . ...... . . . . . . . . . . ............................... ... . ... . . . . ... .. . ................... . . .... .... ................ . .. ....... ... . ........................ .... . ...... ....... ... . . . . ........................................................... . .... . ... .......... ........ . . .. . .. ....... . . ..... . .. .. . .. . ... . ... .......... . . . . . . .. .. . ........................ ... ...... .... ... . . .. ... . . .. .. . ... ... .. . . . .. . ................................................... . ...... . ......... . . ....... ..... .... .. .......... .. . . . . . . ........................... . . . ............ . ..... . . .. . .. . ...... .. . . . ............... . . . .. .. . .... ............................. .......... .... . . . . .............. ... ... . .... . ...... . . .. . ........ . . . .. . . ... ... . . ... . .... .. . .... . . .. . ... . ... . . . .
lowQualScore : 7 22 7 5 7 3 888 3 2222 777 5 3 22 7 22 2222 555555555555 6 00 8 8 6666666 00 0 6 0 00 6666666666666666 0 8 0 8888888 0 0 0 88 2 88 55555555 000 0 0 0 2 88888888888 2 0 0 888888 2 222222222222222222222222222222222222222222222222 00 00000000000000000 5 2 0 0 0 5 5 0 5555555 0 888 00 0000 00 888888 8 00 000 8 0 00 2222222 0 0 0 00000000000 55 00000 555 2 0 555 88 2 0 0 0 8 8888 4 0 00 0 0 0 8 2 0 8888888 2 7 333333 5 555 7 77777 7 222222 7 7 7 7 7 7 7 7 7 7 7777777777777777777777777777777 777 7 777 7 7 5 7 333 22 7 8888888888888888888 2 7 5555 0000 0000000000000000 8 00 2222222 666 7 999999999999999999999999 2222 7 555555 2222222 888 7 7 7 7 66666666666666666666666666666666666666666666666666666666666 8 0000 8 000 0000000000 00000000 8 0 00 0 88 0000000 8 0 88888 0 88 55 2 22 0 000 0 555 5555555555 0 0 5 0 0 2 88 88 5 888888888888888888888888 222 555555 5555 555 8 4 00 000 0 0 88 00 4 000 000 00 0 8 0 00 4 888888888888888888888888888888888888888888888888888 0 000000 0 888888888 5 5 8888888 88888 2222 77 0000000000 22 0 0 7 0 0 8 444444444444444444444444444 0 8 5 888888888888 0 22222 8 3 22 7 55 7 555555 22 7 7 7 888888888888888 3 7 4 99 77 0 6666 77777777777777777777777777777 0000000000 2222 3 7 7 7 88888888888888 777 777 7 2222 3 777777 7 7 11 7 99999999 7 7 7 88 7 7 222 999 7 7 999 4 3333 99 4 1111 7 7 99 4 999 7 777 7 7 7 7
consensus : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTCTCAGAA----TAAAAAA---TAATTCTCAGCT-GAG--AACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACAGACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CTAA-GCT-GA--TTTTGGA--ACTCTT-CTG---TAA-T-ATAA-G-GTA-TAAAAAAA-------A---ACAT-AAGCAAC------ATATGAC--AC----CCCC-AGAGNCG---GC----CA-----T-----TT-TTTTTTCCGGGGGGGGGGGGGG---GG---TTA----A-CAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTTTCCTCCCCCC----AAAA--CATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--NT-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATA-TTT--CTAAAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCT-------------AA-CCATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTC-AAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAA--CGA---------CGAAAAG--GCA--A-T-CG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTT-CCC-TCCCGGCCCGCAG---TTCTCGAA---ATG-TTCA-AGCCGTCACCCGATCGA--GCT----A---AGTTGTATG-G-A-TC-GGT-TA-GGT--TGC--A---AAATC-TC--AA--GCAC-AGNA--AGCAGTGACAGTATGGGTGACGA-CAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCACG--AGACATGGAACACC-CCNC-----CCCCCTGTCGGAATCGGNAAAC-----ACGNT-TCGAC---TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGGG-GCAAG----------TAAA-CCTTG-CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG-T--GTACAA-CA-G-T-AGCCATT----CTTGTTTTTG-AG-A-ACAAA---A---AAA-C--TATACTTAAGTC-TTGC---T-ATGA-A-CCAAACTTAA-G-A--TTTTTTTC-ATT-CT--GAGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
Reference ( family-3473 ) : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTCGT--TTCTCAGAA----TAAAAAA---TAATTCTCAGCTTGAG--AACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACAGACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACAGC-G-T-AT-CTAA-GCT-GA--TTTTGGA--ACTCTT-CCG---TAA-T-ATAA-G-GTA-TAAAAAAA-------A---ACAT-AANCAAC------ATATGA---A----------ANAGGCG---GC----CA-----T-----CC-TTTTTTCCGGGGGGGGGGGGGG---GG---TTA----A-CAACGCAC-GACGC-TAATAGGAAA-TG--TN-T-ACTTTG-AATTTCCCTNNCCCC----AAAA--CATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--TT-C-ACATA-CAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATA-TT---CTAAA-TCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCT-------------AANCCATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGATGTTGTTG--TCGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--CGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCC--AA------GGCT--------TTCCTTTAAAAT-GTTTA--TC-AAT-A-------CTTACTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAAAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATNTTGTGT-GC-AACATCT--CCA--CGGGGG--A--AAA--CG----------CGAAAAG--GCA--A-T-CG-A-GGTAGC-CCACCGC--CGGC-CCCGA-A-TTT-CC--TCCCGGCCCGCAG---TTCTCGAA---ATN-TTCA-AACCGTCACCCGATCGA--GC---------GGTTGTATG-G-A-TC-GGT-TA-GGT--TGC--G---AAATC-TC--AA--GCAC-AGNA--AGCAGTGACAGTATGGGTGACGACCAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTG-ATCACG--GGACATGGAACACC-CCNC-----CCCCCTGTCGGGATCGGGANAC-----ACGNT-TCGAC---TCAATAAA-GCCAA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGGG-GCAAG----------TAAAGCCTTG-CC-GAT--ACTCNTCG--TATTTC-----------GTTTTAC-----AG-T--GTACAA-CA-G-T-AGCCATT----CTTGTTTTTG-AG-A-ACAAA---A---AAAAC--TATACTTAAGTC-TTGC---T-ATGA-A-CCAAACTTAA-G-A--TTTTTTTC-ATT-CTTGGAGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
gi|1 : ATGACAATAGAACAATAAAAATTCACTCAGCACAAAAATTTTGAAATTCTCAGAAATCATAAAAAAACATAATTCTCAGATGCAG--AACTTACAAATATTAACAACA---AT----TTGAGACCCATTTAAACAGACTTGAGAATAATTAAACTT--AGCTTGAGAAAAAAAACAC--CCTAACCGATAC-CACTCGAGAACAATTTTCTTGCACCACGACACT-G-T-AT-CTAA-GCT-GAAATTTTGAACTACCCTC-TCG---TAAAT-TTAACG-GTAATAAAAAAA-------G---AT-T-CAGCAAC------ATATAA---ACATGGCCCC-AAAAGCGTCGGC----CAAAATCT-----CTATTTTTTCCGGGGGGCGGCGGAGCGCGA---TTGTAACA-CACCGCACCGATGC-TAATAAGAAA-TGGCCG-T-ACTTTGCAATTTT--TTTCCCC----AAAAAACATTTGAGGCACTACATATTCAGACAAAATCAACAAAAGGTTTTAAACAGGCTACTGTTCATCA--TTAC-ACATAACATAGTA-CAATGACTAAG--CTA-CACAAATACATT---TGACATA-A-TTTTACTAAT-TCGTTTGCATC-CACC-ACTCAAT-CTCAACGGGAGA--TCA-ATTCTGCTTCAGTTGAA--------------------GTTTAAATTTAG-CAGGCCCCAATTCACCTTCTTTCTAAGTTTGT-ACGCTTTT-AGCCAATA------TTTTTGT-ATATAG-CTTCTA-AATTCTCTATTCTAAAAAGT-AACTTTCAA-------------------------------A--CATT---TATTTGAAGCA-CTTTTATTGAACA-TGA-GCAGCGACATTATTCAAAA--AGGTCAAAGGCC------AGT-GTCATTACGTAGACGATAGGCATTGTTG--TTGTTACA---------------------------TATCCAATTAGG-GAA-GCGGACCACTGAGTGCAACTATGA-------TCAGGGCGAAA------GC----CCATT--TTAGAGGTAAAGTTTACAAA-TCTAACTCCTCAACGCAAGATATTCTCCTGACTTGAATATTGT---TATTAGACTTAAAGTAT--ATCATCTGAGGCA--CT---TTAGCAAGATTTCCC---CCCCCCCCTTTAA------GGCT--------TTCCTTTTAAATAGTTTAATTC-AATCA-------CTTGGTAAGG-ATG-TGT-TGCC--ACTAAAGCCTAAAAGAAAGAACAA--ATAACAGGCATAAATTCTCCTAAA--ACTCACTATCCACTTATATTGTGTTGCTAACA-AT--CCA--C-------ATTAAA--CGAG--------CGAAAAAAAGCA--AAT-CG-AAGGTAGC-CACCCGC--CGGC-CT-GACA-TTT-CCCCTCCCGGCCTGCAGCT-TTCTCGAAGATATT-TTCA-AACCGTCAACGAATCGATTGCTCATCAAGAAGTTGTATG-G-ACTC-GGG-TA-AGC--TAT--A---AAATC-TC--AAAAGCAC-AGAA--AGCAGTGACAGTATGGGT---GACCAAGGCCAT-AT--TTC----CTCCTTCAAC----A-AATTCCCCCCTGGATTTGCATAACAACGGACATGAAACACCACCCCACCTACTCCCTGTCGGAATCAGGAAAC-----ACGGTATCGAC----CAATAAAGGCCGA--GG-GCAAT-CTGTTGA-CATCCC--GAACACACCTCGCGGG-ACAAG----------TAAA-CCTTG-CCAGATTCATTCATCGATTATCTC---------------TAC-----AA-T--GTACAA-CATG-T-AGCCACT----CTTGTTTATG-AG-ACACAAA---A---AA-----TATACTTAAGTCGGTGCATAT-ATGA-ATCCAAACTTAA-GCA--TTTATTTC-ATTGCTGAAAGTACCGAAATTTGTAC------TG-A-GAATCTTTTTCAT-GG-TCTCA-AC-TTTTTTCTCATACTT-GAGACAAAAAATATGA-ACATTTTCTGAGAAAAA-AAAAACA-TTCGAGTTTGAGAA-T-CTTTTATTGTCT---GAGAAT-T-GTTT-TA-TGGT
gi|10 : aACCATAAAACAATAAAT-TCT--TCAG-ACAA---TTTTGT--T-CTCAGAA----TAAAAAA---TACTTCTCAGCTGAGG--AACTT-CA--TAT------AA---AT----T---GAGACAT--AAACAGACTTGAGAATT-TTC--CTT--AGCT-GAG---AAAAA-AC--CT----CG-TACTT----GAAGACT-TTTTTTT
gi|11 : tgaCCAC--CG---CCCGA-A-TT------TCCCTACCAGCAGTATTCCTGGAA---ATG-TTGA-GGCTGTC-TCCAATT-A--GC---------AGC----TG-G-G-TC-GCT-CC-GGT--TGCCAA---AAACC-TC--
gi|12 : acccacggggaatgcgatgacatttctgaatgcgctcactagcaacgtggT--CTC----CTTCTC---C----A-AAT--GCCCCTGGA-TGG-A
gi|13 : acaatgccatgttcctctttgTTTTTTC-ATT-CT--GAGTA-CGAAATTTGT-CTCAACTTG-A-GAAatcgtgtaaatacaaaatagtcccccgccgaaatctgtaccgttcaaaaggctccacatcgtca
gi|13 : AA-ATTTGTCTCA-ACTT-G---AGAAAAATAT-G-AAA--TTCGGAG----AGAAAAACA-T--GAG-TTGAGAATT-TTTTTTTTGTCT---GAAAAT-T-GTTT-TA-TGGTGaaatatgaaattcggagagaaaaacatgagttgagaattttttttttgtctgaaaattgttttatggtggt
gi|14 : ttttttcattctgagtacgA-TATGA-------A---------A------GC----C-ATT--T---AGGTAAAGTTTC---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------G-------------TGAA--------------------------TTAT----ATTACCC---CCCCCCCCC--AA------GGCT--------TTCCTTTAAAAT-GTTTA--TC-AAT-A-------CTgt
gi|16 : tatgAA-GT-AACTTTCAACTT--------------------------------------TATTTGAAGCA-TTTTCA---AA-A-TGATTCAGGAG-ATTATC---AA--AGGTCAA-GGCC-------G--GT------GCAGCCGATGGATGTTGTTG--TTGTTACAA-A--TTA
gi|17 : TTAAATT-AA-CGG--CCCAATTCACT--CTTTCTAAGTTTGT-G-----TT-AGCAACTACATGTATTTT-GT-AT-TAG-CT-CCA-A-TTCTCTATTCTAAAA-GT-AACTTTCAAC
gi|18 : CATACTACCATAAAA-TAC--TCAG-AAAAAA-TTTCA---TTCTTGGAA----T-AAAAA---TAATTTTCAG-TTGCG--AAATT-CA--TCT----AGAATTCATGCCATGAAGAGA
gi|19 : T-TCGA----TCAATAAA-GGCGA--GG-GG-AT-CTG-TCC-GGTTCC--GAA-ACACC-CACGGG-GCAAGCTAGTAGACCTAAGTCCTTG-CC-GAT--A-TCGTCG---ATTTC-----------GTTt
gi|2 : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTCTCAGAA----TAAAAAA---TAGTTCTCAGCTTGAGTGAACTT-CA--TAT----AAAA---AT----TGAAGAGACAT--AAACAGATCTGAGAATT-TT---CTT--A-CT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACA-C-G-T-ATGCTAAAGCTTGA--TTTTGGA--ACTCTT-CTGCTGTAA-T-ATAA-G-GCA-TAAAAAAA-------AGGAACAT-AAGCAAC------ATATGAT--A----------ACAGGC-----C----CA-----T----------TTTTCCGGGGGGGGGGGGGG---GGGGGTTA----AACAACATAC-GATGCATTATAGAAAA-TG--TT-T-ACTTTG-AATGTCCCCCCCCCCCCCCAACG--CATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--GT-C-ACATA-CAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTT---CTAAAGTTGTTTG-ATCACACC-ACTTAAT-CT-AAGGCGAGGACTCA-AT-CTGCTTCAGTTGAATACCAT-CAGAGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTCT-TTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TTG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AAATTTCAACTT-AAAT-----ATCTG------------AATCTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGATGTTGTTGAAACATTACAA-A--TTAAT----ATACGG-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------T---------A------GC----C-ATT--T---AGGTAAAGTTTA---ACTCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CA---TTAT----ATTACCC---CCCCCCCTT--AA------GGCT--------TTCCTTTAAAAT-GTTTACTTC-AAT-ACTAGCGCCTTACTTGGGCATG-T-T-TGCA--AATAAAGTCTAAAGGAAAGAA-AA--CTAACAG-CA---ATTCTCCTAAATTCCT-----TCCA-TTGTTTTGTGT-GC-AACATCT--CAA--CGGGAATTATTAAA--CG----------CGATAA---GCA--A-T-CGCA-GGTAGC-CCACCGCCGCGGCTCCCGA-A-TTT-CC--TCCCGGTCTGCAG---TTCTCAGA---ATA-TTCAGAACCGTCACCT-ATCAA--GC---------AGTTGTGTATG-A-TCAGGTCTACGATTATAC--A---AGATC-TCCTAA--GCAC-AGCACTAGT--TGACAGTATGGGTTGCGA--AAGGCCATAATAATTC----CT-CTT---C----ATAAT--CC----------G-ATC-CG--A--------------CTAC-----CCACCTGTC-GAATCGCGTTAT-----TCGCT-TCGATG--TCAATAAA-GCCAG--GG-G--AT-CTG-CGC-GGTCCC--GAA-ACACC-CGCGGG-GCAAG----------TA---CCTTG-CCGGAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG-T--GTACAA-CA-GTT-AG-CACT----CTTG-TTTTG-AGCA-ACAAA---A---AAAAC--TATACTT-AGTC-TTGC---T--TGA-A-CCAAAC-TAA-G-A--TTTTCTTCTATT-CTTGGAGTA-GAGAATTTGT-C------TG-AGGAATCTTTT--AT-GGACCTCACAAGATTTTTCTCA-ACTTAG-GAAGAAAAATATTGAAAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-TGTTTTTTTTG-CT---GAGAAT-TAGTAT-TATCAGTGTCAT
gi|20 : CAAGGCCATA----TTC----CTC-TT---C----A-AAT--CCCCTTGGA-TTGCATTAC---AGACAT-GAACAC-----A-----CCCCCTGTCGGAATCGGt
gi|22 : tgaCCC----AAAA--CATTTGAAG-A-TG-ATATTCAGA--ACATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--t
gi|23 : tttATGACCATAAAACAATAAAA-TTC---GAG-AC--AA-TTTTG---TTCTCAGAA----TA
gi|3 : tATGACCATAAAACAATAAAA-TTC--TTAG-A-AAAA-TTTTGT--T-CTCAGAA----TAAAAAA---TAATTCTCAGCT-GAG--AACT--CA--TAT----AAAA---------TGGACCAAT-C--AAACAGACT-GAGAAT-------CTT--AGCT-GA--AAAACAG-CC--CT----CGT--C-T-----AGAACT-TTTTTC--CAC-ACGCCAAC-GGT-AT-CTAA-GCT-GA--TTT-GGA--ACTCT--CTG---TAA-TGATAA-GAGTA-TAAAAAAACATAGCCA---ACATTAAACAATCTCGAAATATGGCCCA----------AGAGTCG---GC----CA-----T-----TT-TATTTTC--GGGGGGGGGGGGG---TG---T------A-CAA-GC-----CGTATCATAGAAAAGTG--TTGT-ACTTGA-AATTT---TTTCCCC----AAAA--CATGAAAGG-A--A-ATAT-CAGA--AAGTCAACAAA---TTTTAAA-AGGT--CTGTTCATCA--TT-CCACATAACAT-GTA-TA--------G--CTA--ACAA-----TTATTTGATACATA-TT---CTAA--TGCTTTG-ATC-CACCCAC-CAATTCT-AAGG--AGA--TCA-AG-TCGCTT-AGT-GAATACCAT-CAAGGAAG--TA---TTAAATT-AGTCGG--CC-AATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAC-CT-CTCCA-TTCTCTAT-CTAAAA-GT-AACTT-CAACTT-A--T-----TTCG-------------AA--CATT---TA---------------A---AA-A-TGAT-CAGGGA-ATTATC---AATAAGGTCAA-GGCC------GGTGGT-------CAGACGATGG-TGTTGTTG--TTGTTATAA----TTAAT----ATA--GGA-GATATA-CCA--TAGGT-AA-G-GAGCC--TGA-TGCAA-TATGA-------A---------ATAGAAAAC----C-ATT--T---AGGTAAA-TTTA---A-TCTAAT--CT--A-AAAAGA-AT-CT---------------GTACAT----GAAATGGA---TTAGT-----GG---A--TAGAATTAT----ATTGTCCTTGCCCCCCCCT--TA------AGCT--------TTCCTTTAAAAT-GTTTA--TC-AA--A---------TACTTAGG-ATGAT-T-TGAATGAATAA-GCCTAAAAAAAAGAA-AAAGTTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATCTTGTGT-GC-AACATCT--CCAACCGGGAA--A--AAAAACGG---------CGAAAAG--GCA--A-TTCG-A-GGTA-T-CCACC-C--CG---CCCGA-A-TTT-CCC-TCCCGGCTCGCAG---TTCTCGAG---ATAATTCA-ACCTTTCACCTGATCGA--GCTATCAA---GGTTGTATG-GGA-TC-GGTATA-A----T--------AAATCATC--AA--GCACCAG----AGCA-TGACA-TATGGGTGAC----AAAGCCATA-----TC----CTC-TT---C----A-AAT--CCCCCTGGA-TTG-ATCACG--GGACATGGAACACC-CCCC-----CCCCCTGTC-GGATCGGTAG--------CG-T-TCGAT---CAAATAAATGGCGATTGGCG--AT--CG-TGC--GTCCC--GAA-ACCGC-CACGGG-GCCAG----------TAA--CC--G-CC-AAT--A-TCAACG-----TTC-----------G--TTAC-----AGAT--GTAC-A-CA-G-TAAGCCATT----C-TG---TTG-AG-A---AAA---C---AAAACCATATACTTAAGTC-CTGC---TAATG--A-CCAAACTAAATG-A--TTTTTTTC-ATT-CT--GAGTA-CGAAATTTGT-C------TGAA-GAAC-TTTT--AT-GG-TCTT-CAA-A-TTTTCTCA-ACTT-T-GAAGAAAA--GTAG-AAA--TTC-GAT----G-AAAAACA-T--GAG-TTGAGA-----TTTTTTTGTCT---GAGAATATGGTTTGTAT
gi|4 : ATGG-------A---------A------GC----C-ATTAATG--AGGTAAAGTTAT---A-TCTAA------AG-GCAGGA-GTCCT------------------------------------T--AT-----GA---AATCT---TT-T----AT-ACCC---CCCCCCCCC--CACCCCCCGGTTAAATCAAATGCC---AAACT-GTTTA--TTTAAT-A-------CTTG--TAGG-ATA-C-TATGAA--AATG--------------GAA-AA--TTACCAG-CA---ATTCTCCCGAAAGCCC-----TCCA-TCACTTTAT-T-GC-AACATCCACCCA--CGGGGG--A--AAG--CGATGAACATCTCTAAATGC-GCATCA-C-CA-A---CAACGTCGCCAC--CG---CCCGA-AATTTGCC--TACCAGCA-GCAT---TTCTTGAA---ATG-TTGA-GGCTGTCTCCCAATTAA---C---------AGCTG-----G-G-TC-C-T-CC-GGT--TGC--GCAAAAACC-TC--A---GCAT-AGTA---GTAAGGA-AACATGGGAGAC----AGAGCCATGTT--CTCTTGTCTCCCT---CTCCAG-AAT--GGTCATGGA-TGGCATCGTGT-AGATAC--AAGATG-GTGC-----CTC---GCCGAAATCTGTAATCTTTCAAATAT-TCGACATCTCA-TAA--GCTAA--CG-GT-AT-CCA-CTC-GGTCTC--GGA-ACACC-CGTGGAAGCAGG----------CAAAGCCTGGACC-GAT--AC-CTTCT--TGTTTC---------------TACGTAAAAG-TCTGTGCAGGCA-G-C---CCATT----TTTATTTTTGCAG-A-ACAAATTT--------T--TATACTTAAGTC-T-GC---T-ATGGGA-CCAAACTTAA-G-AATTTTTTTTC-ATT-CT--GAGTA-CGAAATTTGTGC------TG-A-GAATGTGTT--ATCGG-TCTCA--A-ATTTTTCTCA-AGTT-G-AGAATAAAATAAAA-GAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTGTT--ATCTA--GAGAAT-TGTTTT-TATTGGTg
gi|5 : cgaaAACAAA---TTT--AA-AAGT---TGTTCATCAAAGT-A-ACATT-CAT-GTAATA--------GAGCTAACGCAA-----TT---TGATACATA-TTT--CTAAAGTCGTTTG-ATC-CATC-ACTTAAT-CT-AAAGGGAGA--TCACAT-CTGCTTCAGTTGAATA-CATGCAAGGAAAAAT-AGTTT--ATT-AG-CGT--CCCAATTCAC-TTCTTTCTAAGTTTGTGG-----TTAAGCAACTA--------TT-GCAAT-TAGCCT-CTA-A-TTCTCTATTC-AAAA-GTAAACTTTC--CTT-AAATA----ATCT-------------AAGCTATT---ATTTTGAAGCATTTTTTA---AA-ATTGATGCAGGGG-ATTATCA--AA--AGGTCAA-GGCC-------G--GT------GC-GACGATGGATGTTGTTG--TTGTTACAA-AACTTAATTTTAACC--G-AGGATATATCCAT-TAGGTGAAGG-GGACC--CGAGTGCAA-TATGA-------T---------A------cat
gi|6 : AA-GCTAA--CG-G--ATTCCA-CTCCGGTCTCTCGGA-ACACT-CGTGGA-GCAGG----------CAAAGCCTGA-C---AT--AC-CTTC---TGTTTCTATGCGTAAACGTCTT--------G-T--GCACAG---------ACCATT----TTTATTTTTG-AG-A-ACAAA---ATTT----C--TATACTTAAGTC-T-GC---T-ATGA---CCAAACTTAA-G-A--ATTTTTTC-ATT-TCT-GAGTA-CGAAA-TTGT-C------TG-A--AATGTTTTC-AT--G-TCTCA-AA---TTTTCTCA-AGTT-G---AGAAAAATAAAG--AA--TTCTGAG----A-AAAAACATT--GAGATTGAGAA-T-TTTTTTATGTCTTTAGAGAAT-TGTTTT-TAATGG-GTCATt
gi|7 : tcatggatggctcgtagtagataccaagtatggtttgcctcgcccgaagatcatgtacctttcaatagcgctcaacatgtcatTTTG-ATC-CACC-ACTCAAG-A--AAAGGGAGA--GCA-TT-CTGCTTCAGTAGAATATCAT-CAAGGAAAAATAAC----ACTT-TG----------ATTCACTT-CTGCCTAAGTTTGT-G-----AT-AGGAACTA------TTCC-GA-AT-TAG-CT-CTT-A-TTCTTTATTCTTAAG-GT-AACTTTCAAATTAAAATTGTAAATCTGACACACGCAGCAGATCCATTTAATATTTGAAACC-TCTTTT---AA-A-TGATGCAAGGG-ATTTTC---CA--AGGTCAA-GGCCAATTCAGA--GT-------CAG-CGATGTACA--ACCA--T-GTTACAATA--TTAATC---ATA---------ATATT---------------GGACC--GGAGTGCAA-TATGACATACGGA---------A------GCCATAC-ATT--T---AGGTAAAGTT-------TCT-GT--CTTAA-GAAGGA-GTTTT---------------G----T----AACTTGAT---T--AT-----Gaggccct
gi|8 : ---TAATTCTCAGCT-GAG--AACTT-CA--TAT----AAAA----T----TG---AGACCT--A--CAGACTTGAGAATT-TT---CTTTTAGCT-GAGAAAAAAAA-ACACCT----TGT-AC-T----GAGAACT-TTTTTTTGCAC-ACGACAGCGG-TAAT-CGAA-GCT-GA--TTTTGGA--ACTCTTGCTG---TAA-T-ATAA-G-GTA-T--AAAAA-------A---ACAT-AGCCCAC------AT-TAA---ACTATTCTCTGAGAATTG---GCAAAACA-----CTTTTATT-TTTTTTCCTGGGGGGGGGGGGG---G-----TA----C-AAACACAC-GATGC-TAATA-GAAA-TG--TG-TAACTTTG-AATTTTTTTCCCCCC----AAAA--CATTTGAGGAA-TA-ATATTCAGT--AAAACAA
gi|9 : TTG-TC-GAT--A-TCATCG---ATTTC-----------GTT--AC-----A--T--GTACA--CA-G-T-AGCCATCTTAGCTTGTTTT-G-AG-A-ACAAA---A---AAA----TATACTTAAGTC-T-GC---T-ATGA-A-CCAAAC-------------------ATT-CT--GAGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCT--CAA-ATTTTTCTCA-ACTT-G---AGAAACCTAT-G-AAA--TTCTGGG----A-AAAAACA-T--GAG-TTGAGAA---TTCTTTTTGTCT---GAGAAT-T-GTTT-TA-TGGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATGGATGGCATCGTGTAGATACAAGATGGTGCCTCGCCGAAATCTGTACCTTTCAAATAGCTCAACATCGTCATAAGCTAACGGATCCACTCGGTCTCGGAACAC
Unaligned ( gi|21 ): CAAGGTCGCCACGCCCAATTTTTCCTTCCGGCTGCCATCCCTAAATGTTACAGCTGTCTCCTATTAAAGCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 11111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 1111 111 1111 11111 222222222 11111 1111111 11 2222222222222222 1 1111111 1 1 1 11 11 3333 1 111 1 1 1 5555555 1 222222 111111111111111111111111111111111111111111111 22222 5555555555555 1 1 1 2222222 1 22222222 111111 11 111 11 2222222 11 1 1 44444444444 11 22222 111 11 1111 11 1111111 11111 111111 11111111111111111111111111111111 111 111 111 4444444444444444444 111 1111 5555555555555555 11 1111111 11 444444444444444444444444 1111 111111 2222222 111 22222222222222222222222222222222222222222222222222222222222 1111 111 2222222222 22222222 11 222222222222 1 11111 11 11 1 111 1 111 3333333333 1 1 1 11 11 1111111 11 5555555555555 2222 1111 111 11 333 111 11 111 11 999999999999999999999999999999999999999999999999 111111 1 222222222 2222 22222 1111 1111111111 5555555555555555555555555555 444444444444 33333 1 22 111111 1111 2222222 1 11 2222 55555555555555555555555555555 1111111111 1111 2222222222 111 111 11 111111 11111111 11 222 222 1111 1111 1 111 111 1 1
lowQualScore : 6 99 6 2 6 22222 77 2222 000 0 5 5 3333 77 77 22222 555555555 66 55555 6 8888888 99 8 5 8 11 1111111111111111 8 0 0 5555555 0 0 0 33 3 2 33 0000 0 111 0 0 0 3 0000000 3 0 0 888888 111111111111111111111111111111111111111111111 22222 2222222222222 2 3 0 5 1 6 0 0000000 0 77777777 777777 0 11 444 0 8 11 2222222 33 0 0 00000000000 22 55555 777 3 3 33 6 8 8 8 0 1111 1 5 11 8 8 6 0 8 8 8888888 3 6 999999 2 666 6 66666 6 999999 6 6 6 6 6 6 6 5 5 0 00000000000000000000000000000000 111 6 111 6 6 2 6 888 99 6 3333333333333333333 3 22 222 9999 4444444444444444 0 99 3333333 11 6 999999999999999999999999 4444 6 888888 0000000 000 5 6 6 1 99999999999999999999999999999999999999999999999999999999999 0 7777 0 444 6666666666 99999999 0 8 66 8 777777777777 0 55555 1 33 00 0 11 0 555 0 777 3333333333 0 1 2 0 0 3 33 33 2 9999999 77 6666666666666 4444 3333 000 1 6 11 333 8 8 5 8 222 11 444 99 8 1 6 11 6 777777777777777777777777777777777777777777777777 8 999999 0 888888888 2 6 7777 77777 4444 9 6666666666 99 1 1 6 1 6 1 6666666666666666666666666666 3 1 1 333333333333 8 22222 0 3 99 6 22 6 000000 99 6 6 6 4444 7 1111111 2 77 1 77 88 0 0000 44444444444444444444444444444 9999999999 4444 7 6 6 6 6 7777777777 999 111 6 66 6 7 111111 5 5 5 77 77 5 77777777 5 5 6 55 6 6 333 888 5 5 222 1 1111 77 1 2222 5 5 77 1 999 555 5 3 5 5
lowQualScore : . .. . . . ..... .. .... ... . . . .... .. .. ..... ......... .. ..... . ....... .. . . . .. ................ . . . ....... . . . .. . . .. .... . ... . . . . ....... . . . ...... ............................................. ..... ............. . . . . . . . ....... . ........ ...... . .. ... . . .. ....... .. . . ........... .. ..... ... . . .. . . . . . .... . . .. . . . . . . ....... . . ...... . ... . ..... . ...... . . . . . . . . . . ................................ ... . ... . . . . ... .. . ................... . .. ... .... ................ . .. ....... .. . ........................ .... . ...... ....... ... . . . . ........................................................... . .... . ... .......... ........ . . .. . ............ . ..... . .. .. . .. . ... . ... .......... . . . . . . .. .. . ....... .. ............. .... .... ... . . .. ... . . . . ... .. ... .. . . . .. . ................................................ . ...... . ......... . . .... ..... .... . .......... .. . . . . . . ............................ . . . ............ . ..... . . .. . .. . ...... .. . . . .... . ....... . .. . .. .. . .... ............................. .......... .... . . . . . .......... ... ... . .. . . ...... . . . .. .. . ........ . . . .. . . ... ... . . ... . .... .. . .... . . .. . ... ... . . . .
lowQualScore : 7 22 7 5 7 66666 99 1111 000 3 7 7 7777 11 99 33333 333333333 00 00000 7 5555555 22 0 6 0 00 6666666666666666 0 8 0 8888888 0 0 0 88 2 5 88 8888 0 000 0 0 0 2 0000000 2 0 2 888888 222222222222222222222222222222222222222222222 55555 5555555555555 5 2 0 5 0 5 0 5555555 0 00000000 888888 8 00 000 8 0 00 0000000 00 0 0 00000000000 55 00000 555 2 2 88 5 0 0 0 8 8888 4 0 00 0 0 0 8 2 0 8888888 2 7 333333 5 555 7 77777 7 222222 7 7 7 7 7 7 7 7 7 7 33333333333333333333333333333333 777 7 777 7 7 5 7 333 22 7 8888888888888888888 2 33 777 0000 0000000000000000 8 00 2222222 00 7 999999999999999999999999 2222 7 555555 2222222 888 7 7 7 7 66666666666666666666666666666666666666666666666666666666666 8 0000 8 000 0000000000 00000000 8 0 88 0 888888888888 0 88888 0 88 22 2 00 0 000 0 555 5555555555 0 2 5 0 0 2 88 88 5 5555555 00 2222222222222 8888 5555 555 4 4 00 000 0 0 0 0 888 00 000 44 0 4 0 00 4 222222222222222222222222222222222222222222222222 0 000000 0 888888888 5 5 8888 88888 2222 3 0000000000 22 0 0 7 5 7 0 3333333333333333333333333333 2 0 0 000000000000 0 22222 8 3 22 7 55 7 555555 22 7 7 7 2222 3 7777777 3 99 4 99 77 6 6666 77777777777777777777777777777 0000000000 2222 3 7 7 7 7 2222222222 777 777 7 55 7 3 777777 7 7 7 99 99 7 99999999 7 7 7 88 7 7 222 999 7 7 999 4 3333 99 4 1111 7 7 99 4 999 777 7 7 7 7
consensus : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA-G-----AACAT-AAGCAAC------ATATGA-C-AT--CCCC--AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAA-G-GCA--A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGGT-ACGACAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGGAACAC--CCGC-----CCCCCTGTCGGAATCGGTAAAC-----GCGNT-TCGAC---TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGGG-GCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG-T--GTACAA-CA-G-T-AGCCATT----CTTGTTTTTG-AG-A-AC-AAA---AAAAC--TATACTTAAGTC-TTGC---T-ATGA-A-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
Reference ( family-3473 ) : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA-------AACAT-AAGCAAC------ATATGA-C-AC--CCCC--AGA---GNCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TCCTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTAA--------------CCATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAG---GCA--A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGGTGACGACAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCACG-A--GACATGGAACACC-CCNC-----CCCCCTGTCGGAATCGGNAAAC-----ACGNT-TCGAC---TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGGG-GCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG-T--GTACAA-CA-G-T-AGCCATT----CTTGTTTTTG-AG-A-AC-AAA---AAAAC--TATACTTAAGTC-TTGC---T-ATGA-A-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
gi|1 : ATGACAATAGAACAATAAAAATTCACTCAGCACAAAAATTTTGAAATTC--TCAGAAATCATAAAAAAACATAATTCTCAGA-T-GCA--GAACTTACAAATATTAACAACA---AT----TTGAGACCCATTTAAACA-GACTTGAGAATAATTAAACTT--AGCTTGAGAAAAAAAACAC--CCTAACCGATAC-CACTCGAGAACAATTTTCTTGCACCACGACACT-G-T-AT-CT-AAGC-TGAAATTTTG-AACTACCCT---CTCGTAAAT-TTAACG-GTAATAAAAAAA-------GAT-T-CAGCAAC------ATATAAAC-ATGGCCCC--AAAAGCGTCGGC----CAAAATCT-----CTATTTTTTCC---GGGGGGCGGCGGAGCGCGATT-GTAACACACCGCACCGATGC-TAATAAGAAA-TGGCCG-T-ACTTTGCAATTT----TTTTCCCCAAAAAACATTTGAGGCACTACATATTCAGACAAAATCAACAAAAGGTTTTAAACAGGCTACTGTTCATCAT--TAC-ACATAACATAGTA-CAATGACTAAG--CTA-CACAAATACATT---TGA--CATAATTTTACTAATTCGTTTGCATC-CACC-ACTCAAT-CTCAACGGGAGA--TCA-ATTCTGCTTCAGTTGAA--------------------GTTTAAATTTAG-CAGGCCCCAATTCACCTTCTTTCTAAGTTTGT-ACGCTTTT-AGCCAATA------TTTTTGT-ATATAG-CTTCTA-AATTCTCTATTCTAAAAAGT-AACTTTCAA------------------A--------------C-ATT---TATTTGAAGCA-CTTTTATTGAACA-TGA-GCAGCGACATTATTCAAAA--AGGTCAAAGGCC------AGT-GTCATTACGTAGACGATAGGCATTGTTG--TTGTTACA---------------------------TATCCAATTAGG-GAA-GCGGACCACTGAGTGCAACTATGA-------TCAGGGCGAAA------GC----CCATT--TTAGAGGTAAAGTTTACAAA-TCTAACTCCTCAACGCAAGATATTCTCCTGACTTGAATATTGT---TATTAGACTTAAAGTAT--ATCATCTGAGGCA--CT---TTAGCAAGATTTCCC---CCCCCCCCTTTAA------GGCT--------TTCCTTTTAAATAGTTTAATTCAATCA-------CTTGGTAAGG-ATG-TGT-TGCC--ACTAAAGCCTAAAAGAAAGAACAA--ATAACAGGCATAAATTCTCCTAAA--ACTCACTATCCACTTATATTGTGTTGCTAACA-AT--CCA--C-------ATTAAACGAGCGAA-------AAAAA-GCA--AATCG-AAGGTAGC-CACCCGC--CGGC-CT-GACA-TTTCCCCTCCCGGCCTGCAGCTTTCTCGAAGATAT-TTTCA-AACCGTCAACGAATCGATTGCTCATCAAGAAGTTGTAT-G-GACTC-GGG-TA-AGC--TAT---AAAATC-TC--AAAAGCA-CAGAA--AGCAGTGACAGTATGGGTGAC--CAAGGCCAT-AT--TTC----CTCCTTCAAC----A-AATTCCCCCCTGGATTTGCATAACA-ACGGACATGAAACACCACCCCACCTACTCCCTGTCGGAATCAGGAAAC-----ACGGTATCGAC----CAATAAAGGCCGA--GG-GCAAT-CTGTTGA-CATCCC--GAACACACCTCGCGGG-ACA----AGTAAA-------CCTTG--CCAGATTCATTCATCGATTATCTC---------------TAC-----AA-T--GTACAA-CATG-T-AGCCACT----CTTGTTTATG-AG-ACAC-AAA---AAA----TATACTTAAGTCGGTGCATAT-ATGA-ATCCAAACTTAA-GCA--TTTATTTC-A-TTGCT--GAAAGTACCGAAATTTGTAC------TG-A-GAATCTTTTTCAT-GG-TCTCA-AC-TTTTTTCTCATACTT-GAGACAAAAAATATGA-ACATTTTCTGAGAAAAA-AAAAACA-TTCGAGTTTGAGAA-T-CTTTTATTGTCT---GAGAAT-T-GTTT-TA-TGGT
gi|10 : aACCATAAAACAATAAAT-TCT--TCAG-ACAA---TTTTGT--T-C--TCAGAA----TAAAAAA---TACTTCTCAGC-T-G-AG-GAACTT-CA--TAT------AA---AT----T---GAGACAT--AAACA-GACTTGAGAATT-TTC--CTT--AGCT-GAG---AAAAA-AC--CT----CG-TACTT----GAAGACT-TTTTTTT
gi|11 : tgaGCCAC--CG---CCCGA-A-TTTCCC-TACCAG-CAGTAT--TCCTGGAA---AT-GTTGA-GGCTGTC-TCCAATT-A--GC---------AGC----T-G-GG-TC-GCT-CC-GGT--TGCCA-AAAACC-TC--
gi|12 : acccacggggaatgcgatgacatttctgaatgcgctcactagcaacgtgT--CTC----CTTCTC---C----A-AAT--GCCCCTGGA-TGGAATCGTGTA--AATACAAAATA-----GT-----CCCCC-GCCGAAATCTGTA
gi|13 : acaatgccatgttcctctttgTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-CTCAACTTG-A-GAAccgttcaaaaggctccacatcgtca
gi|13 : TTTT--TTCATTCTGAG----TACGAAA---TTTGTCTCAAC-TTG-A--GAAA---AA--TAT----GAAA---TT----CGGAGAGA-A---AAACATGAGTTGAGAATT-TT---TTT--aaatatgaaattcggagagaaaaacatgagttgagaattttttttttgtctgaaaattgttttatggtggt
gi|13 : AA-ATTTGTCTCA-ACTT-G---AGAAAAATAT-G-AAA--TTCGGAG----AGAAAAACA-T--GAG-TTGAGAATT-TTTTTTTTGTCT---GAAAAT-T-GTTT-TA-TGGTGtttgtctgaaaattgttttatggtggt
gi|14 : ttttttcattctgagtacgA-TATGA-------A---------A------GC----C-ATT--T---AGGTAAAGTTTC---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------G-------------TGAA--------------------------TTAT----ATTACCC---CCCCCCCCC--AA------GGCT--------TTCCTTTAAAAT-GTTTA--TCAAT-A-------CTgt
gi|16 : tatgAA-GT-AACTTTCAACTT--------------------------------------TATTTGAAGCA-TTTTCA---AA-A-TGATTCAGGAG-ATTATC---AA--AGGTCAA-GGCC-------G--GT------GCAGCCGATGGATGTTGTTG--TTGTTACAA-A--TTA
gi|17 : TTAAATT-AA-CGG--CCCAATTCACT--CTTTCTAAGTTTGT-G-----TT-AGCAACTACATGTATTTT-GT-AT-TAG-CT-CCA-A-TTCTCTATTCTAAAA-GT-AACTTTCAAC
gi|18 : CATACTACCATAAAA-TAC--TCAG-AAAAAA-TTTCAT--T-C--TTGGAA----TAAAAA----TAATTTTCAGT-T-G-C--GAAATT-CA--TCT----AGAATTCATGCCATGAAGAGA
gi|19 : T-TCGA----TCAATAAA-GGCGA--GG-GG-AT-CTG-TCC-GGTTCC--GAA-ACACC-CACGGG-GCAAGCTAGTAGACCTAAGTCCTTG--CC-GAT--A-TCGTCG---ATTTC-----------GTTt
gi|2 : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAGTTCTCAGCTT-G-AGTGAACTT-CA--TAT----AAAA---AT----TGAAGAGACAT--AAACA-GATCTGAGAATT-TT---CTT--A-CT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACA-C-G-T-ATGCTAAAGCTTGA--TTTTGGAACT--CTTCTGCT-GTAA-T-ATAA-G-GCA-TAAAAAAAAGG----AACAT-AAGCAAC------ATATGA-T-AA--C-------A---GGC--C----CA---------------TTTTTCCGGGGGGGGGGGGGGGGG---GGTTAA----ACAACATAC-GATGCATTATAGAAAA-TG--TT-T-ACTTTG-AATGTCCCCCCCCCCCCCCAACGCATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAG--T-C-ACAT-ACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTTGTTTG-ATCACACC-ACTTAAT-CT-AAGGCGAGGACTCA-AT-CTGCTTCAGTTGAATACCAT-CAGAGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTCT-TTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TTG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AAATTTCAACTT-AAAT-----ATCTGAAT------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGATGTTGTTGAAACATTACAA-A--TTAAT----ATACGG-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------T---------A------GC----C-ATT--T---AGGTAAAGTTTA---ACTCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CA---TTAT----ATTACCC---CCCCCCCTT--AA------GGCT--------TTCCTTTAAAAT-GTTTACTTCAAT-ACTAGCGCCTTACTTGGGCATG-T-T-TGCA--AATAAAGTCTAAAGGAAAGAA-AA--CTAACAG-CA---ATTCTCCTAAATTCCT-----TCCA-TTGTTTTGTGT-GC-AACATCT--CAA--CGGGAATTATTAAACG--CGAT-------AA----GCA--A-TCGCA-GGTAGC-CCACCGCCGCGGCTCCCGA-A-TTT-CC-TCCCGGTCTGCAG--TTCTCAGA---AT-ATTCAGAACCGTCACCT-ATCAA--GC---------AGTTGTGT-ATGA-TCAGGTCTACGATTATAC---AAGATC-TCCTAA--GCA-CAGCACTAGT--TGACAGTATGGGTTGCGA-AAGGCCATAATAATTC----CT-CTT---C----ATAAT--CC-----GA-TC------CG-A----------------CTAC-----CCACCTGTC-GAATCGCGTTAT-----TCGCT-TCGATG--TCAATAAA-GCCAG--GG-G--AT-CTG-CGC-GGTCCC--GAA-ACACC-CGCGGG-GCA----AGT--A-------CCTTG--CCGGAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG-T--GTACAA-CA-GTT-AG-CACT----CTTG-TTTTG-AGCA-ACAAAA---AAAAC--TATACTT-AGTC-TTGC---T--TGA-A-CCAAAC-TAA-G-A--TTTTCTTCTA-TT-CTTGG--AGTA-GAGAATTTGT-C------TG-AGGAATCTTTT--AT-GGACCTCACAAGATTTTTCTCA-ACTTAG-GAAGAAAAATATTGAAAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-TGTTTTTTTTG-CT---GAGAAT-TAGTAT-TATCAGTGTCAT
gi|20 : GACAAGGCCATA----TTC----CTC-TT---C----A-AAT--CCCCTTGGA-TTGCATTAC--A--GACAT-GAACAC-----A-----CCCCCTGTCGGAATCGGt
gi|22 : tCCCAAAACATTTGAAG-A-TG-ATATTCAGA--ACATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAt
gi|23 : tttATGACCATAAAACAATAAAA-TTC---GAG-AC--AA-TTTTG---TTC--TCAGAA----TA
gi|3 : tATGACCATAAAACAATAAAA-TTC--TTAG-A-AAAA-TTTTGT--T-C--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACT--CA--TAT----AAAA---------TGGACCAAT-C--AAACA-GACT-GAGAAT-------CTT--AGCT-GA--AAAACAG-CC--CT----CGT--C-T-----AGAACT-TTTTTC--CAC-ACGCCAAC-GGT-AT-CT-AAGC-TGA--TTT-GGAACT--CT----CT-GTAA-TGATAA-GAGTA-TAAAAAAACATAGCCAACATTAAACAATCTCGAAATATGG-C------CCA--AGA---GTCGGC----CA-----T-----TT-TATTTTC-----GGGGGGGGGGGGG---TGT-------ACAA-GC-----CGTATCATAGAAAAGTG--TTGT-ACTTGA-AATTT----TTT---CCCCAAAACATGAAAGG-A--A-ATAT-CAGA--AAGTCAACAAA---TTTTAAA-AGGT--CTGTTCATCAT--T-CCACATAACAT-GTA-TA--------G--CTA--ACAA-----TTATTTGATACATATT-CTA--ATGC--TTTG-ATC-CACCCAC-CAATTCT-AAGG--AGA--TCA-AG-TCGCTT-AGT-GAATACCAT-CAAGGAAG--TA---TTAAATT-AGTCGG--CC-AATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAC-CT-CTCCA-TTCTCTAT-CTAAAA-GT-AACTT-CAACTT-A--T-----TTCGAA--------------C-ATT---TA---------------A---AA-A-TGAT-CAGGGA-ATTATC---AATAAGGTCAA-GGCC------GGTGGT-------CAGACGATGG-TGTTGTTG--TTGTTATAA----TTAAT----ATA--GGA-GATATA-CCA--TAGGT-AA-G-GAGCC--TGA-TGCAA-TATGA-------A---------ATAGAAAAC----C-ATT--T---AGGTAAA-TTTA---A-TCTAAT--CT--A-AAAAGA-AT-CT---------------GTACAT----GAAATGGA---TTAGT-----GG---A--TAGAATTAT----ATTGTCCTTGCCCCCCCCT--TA------AGCT--------TTCCTTTAAAAT-GTTTA-TCAAAT-A-----------CTTAGG-ATGAT-T-TGAATGAAT-AAGCCTAAAAAAAAGAA-AAAGTTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATCTTGTGT-GC-AACATCT--CCAACCGGGAA--AAAAAACGG-CGAA-------AAG---GCA--ATTCG-A-GGTA-T-CCACC-C--CG---CCCGA-A-TTTCCC-TCCCGGCTCGCAG--TTCTCGAG---ATAATTCA-ACCTTTCACCTGATCGA--GCTATCA---AGGTTGTATGG-GA-TC-GGTATA--AT---------AAATCATC--AA--GCACCAG----AGCA-TGACA-TATGGGT---GACAAAGCCATA-----TC----CT-CTT---C----A-AAT--CCCCCTGGA-TTG-ATCACG-G--GACATGGAACACC-CCCC-----CCCCCTGTCGG-ATCGGTA--------GCG-T-TCGAT---CAAATAAATGGCGATTGGCG--AT--CG-TGC--GTCCC--GAA-ACCGC-CACGGG-GCC----AGT-AA-------CC--G--CC-AAT--A-TCAACG-----TTC-----------G--TTAC-----AGAT--GTAC-A-CA-G-TAAGCCATT----C-TG---TTG-AG-A-A--AAC---AAAACCATATACTTAAGTC-CTGC---TAATG--A-CCAAACTAAATG-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TGAA-GAAC-TTTT--AT-GG-TCTT-CAA-A-TTTTCTCA-ACTT-T-GAAGAAAA--GTAG-AAA--TTC-GAT----G-AAAAACA-T--GAG-TTGAGA-----TTTTTTTGTCT---GAGAATATGGTTTGTAT
gi|4 : ATGG-------A---------A------GC----C-ATTAATG--AGGTAAAGTTAT---A-TCTAA------AG-GCAGGA-GTCCT------------------------------------T--AT-----GA---AATCT---TT-T----AT-ACCC---CCCCCCCCC--CACCCCCCGGTTAAATCAAATGCC---AAACT-GTTTA-TTTAAT-A-------CTTG--TAGG-ATA-C-TATGAA--AATG--------------GAA-AA--TTACCAG-CA---ATTCTCCCGAAAGCCC-----TCCA-TCACTTTAT-T-GC-AACATCCACCCA--CGGGGG--A--AAGCGA-TGAACATCTCTAAATGCGCATCA-CCA-A---CAACGTCGCCAC--CG---CCCGA-AATTTGCC-TACCAGCA-GCAT--TTCTTGAA---AT-GTTGA-GGCTGTCTCCCAATTAA---C---------AGCTG------GG-TC-C-T-CC-GGT--TGCGCAAAAACC-TC--A---GCA-TAGTA---GTAAGGA-AACATGGG--A-GACAGAGCCATGTT--CTCTTGTCTCCCT---CTCCAG-AAT--GGTCATGGA-TGGCATCGTGTA--GATAC--AAGATG-GTGC-----CTC---GCCGAAATCTGTAATCTTTCAAATAT-TCGACATCTCA-TAA--GCTAA--CG-GT-AT-CCA-CTC-GGTCTC--GGA-ACACC-CGTGGAAGCA----GGCAAA-------GCCTGGACC-GAT--AC-CTTCT--TGTTTC---------------TACGTAAAAG-TCTGTGCAGGCA-G-C---CCATT----TTTATTTTTGCAG-A-AC-AAATTT----T--TATACTTAAGTC-T-GC---T-ATGGGA-CCAAACTTAA-G-AATTTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGTGC------TG-A-GAATGTGTT--ATCGG-TCT--CAA-ATTTTTCTCA-AGTT-G-AGAATAAAATAAAA-GAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA----TTTTGTTATCTA--GAGAAT-TGTTTT-TATTGGTg
gi|5 : cgaaAACAAA---TTT--AA-AAGT---TGTTCATCAAAGT-A-ACATT-CAT-GTAATA--------GAGCTAACGCAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CATC-ACTTAAT-CT-AAAGGGAGA--TCACAT-CTGCTTCAGTTGAATA-CATGCAAGGAAAAAT-AGTTT--ATT-AG-CGT--CCCAATTCAC-TTCTTTCTAAGTTTGTGG-----TTAAGCAACTA--------TT-GCAAT-TAGCCT-CTA-A-TTCTCTATTC-AAAA-GTAAACTTTC--CTT-AAATA----ATCTAAG-------------CTATT---ATTTTGAAGCATTTTTTA---AA-ATTGATGCAGGGG-ATTATCA--AA--AGGTCAA-GGCC-------G--GT------GC-GACGATGGATGTTGTTG--TTGTTACAA-AACTTAATTTTAACC--G-AGGATATATCCAT-TAGGTGAAGG-GGACC--CGAGTGCAA-TATGA-------T---------A------cat
gi|6 : AA-GCTAA--CG-G--ATTCCA-CTCCGGTCTCTCGGA-ACACT-CGTGGA-GCA----GGCAAA-------GCCTG--AC--AT--AC-CTTC---TGTTTCTATGCGTAAACGTCTT--------G-T--GCACAG---------ACCATT----TTTATTTTTG-AG-A-AC-AAA---ATTTC--TATACTTAAGTC--TGC---T-ATG--A-CCAAACTTAA-G-A--ATTTTTTC-ATTT-CT--G--AGTA-CGAAA-TTGT-C------TG-A--AATGTTTTC-AT--G-TCTCA-AA---TTTTCTCA-AGTT-G---AGAAAAATAAAG--AA--TTCTGAG----A-AAAAACATT--GAGATTGAGAA-T-TTTTTTATGTCTTTAGAGAAT-TGTTTT-TAATGG-GTCATt
gi|7 : tcatggatggctcgtagtagataccaagtatggtttgcctcgcccgaagatcatgtacctttcaatagcgctcaacatgtcatTTTG-ATC-CACC-ACTCAAG-A--AAAGGGAGA--GCA-TT-CTGCTTCAGTAGAATATCAT-CAAGGAAAAATAAC----ACTT-TG----------ATTCACTT-CTGCCTAAGTTTGT-G-----AT-AGGAACTA------TTCC-GA-AT-TAG-CT-CTT-A-TTCTTTATTCTTAAG-GT-AACTTTCAAATTAAAATTGTAAATCTGACACACGCAGCAGATCCATTTAATATTTGAAACC-TCTTTT---AA-A-TGATGCAAGGG-ATTTTC---CA--AGGTCAA-GGCCAATTCAGA--GT-------CAG-CGATGTACA--ACCA---TGTTACAATA--TTAATC---ATA---------ATATT---------------GGACC--GGAGTGCAA-TATGACATACGGA---------A------GCCATAC-ATT--T---AGGTAAAGTT-------TCT-GT--CTTAA-GAAGGA-GTTTT---------------G----T----AACTTGAT---T--AT-----Gaggccct
gi|8 : ---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA----T----TG---AGACCT--A--CA-GACTTGAGAATT-TT---CTTTTAGCT-GAGAAAAAAAA-ACACCT----TGT-AC-T----GAGAACT-TTTTTTTGCAC-ACGACAGCGG-TAAT-CG-AAGC-TGA--TTTTGGAACT--CTTG--CT-GTAA-T-ATAA-G-GTA-T--AAAAA-------AACAT-AGCCCAC------ATTAAA-CTAT--TCTCTGAGA---ATTGGCAAAACA-----CTTTTATT-TTTTTTCC---TGGGGGGGGGGGGG---G--T-A----CAAACACAC-GATGC-TAATA-GAAA-TG--TG-TAACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGGAA-TA-ATATTCAGT--AAAACAA
gi|9 : TTG--TC-GAT--A-TCATCG---ATTTC-----------GTT--AC-----A--T--GTACA--CA-G-T-AGCCATCTTAGCTTGTTTT-G-AG-A-AC-AAA---AAAA---TATACTTAAGTC-T-GC---T-ATGA-A-CCAAAC-------------------A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCT--CAA-ATTTTTCTCA-ACTT-G---AGAAACCTAT-G-AAA--TTCTGGG----A-AAAAACA-T--GAG-TTGAGAA---TTCTTTTTGTCT---GAGAAT-T-GTTT-TA-TGGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATGGATGGCATCGTGTAGATACAAGATGGTGCCTCGCCGAAATCTGTACCTTTCAAATAGCTCAACATCGTCATAAGCTAACGGATCCACTCGGTCTCGGAACAC
Unaligned ( gi|21 ): CAAGGTCGCCACGCCCAATTTTTCCTTCCGGCTGCCATCCCTAAATGTTACAGCTGTCTCCTATTAAAGCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 1111 111 1111 11111 222222222 11111 1111111 11 2222222222222222 1 1111111 1 1 1 11 11 3333 1 111 1 1 1 22222222 333333333333333333333333333333333333333333333333333333333333 22222 5555555555555 1 1 1 2222222 1 2222 111111 11 111 11 2222222 11 1 1 44444444444 11 22222 111 11 1111 11 1111111 11111 111111 33333333333333333333333333333333333333 111 111 4444444444444444444 111 1111 5555555555555555 11 1111111 11 444444444444444444444444 1111 111111 2222222 111 22222222222222222222222222222222222222222222222222222222222 1111 111 2222222222 22222222 11 222222222222 1 11111 11 11 1 111 1 111 3333333333 1 1 1 11 11 1111111 444444444444444444444444444 1111 111 11 333 111 11 111 11 1111 99999999999999999999999999999999999999999999 111111 1 3333 11 4444 22222 1111 1111111111 4444444444444444444444444444444 4444444444444 333333 1 11 1111 111111 1111 2222222 1 11 2222 666666666666666666666666666 22222222 1111 2222222 22 111 111111 11111111 11 222 222 1111 1111 1 111 111 1 1
lowQualScore : 6 99 6 2 6 22222 77 2222 000 0 5 5 3333 77 77 22222 555555555 66 55555 6 8888888 99 8 5 8 11 1111111111111111 8 0 0 5555555 0 0 0 33 3 2 33 0000 0 111 0 0 0 55555555 2 333333333333333333333333333333333333333333333333333333333333 22222 2222222222222 2 3 0 5 1 6 0 0000000 0 1111 7 777777 0 11 444 0 8 11 2222222 33 0 0 00000000000 22 55555 777 3 3 33 6 8 8 8 0 1111 1 5 11 8 8 6 0 8 8 8888888 3 6 999999 2 666 6 66666 6 999999 6 6 6 6 6 6 6 5 5 0 33333333333333333333333333333333333333 6 1 111 6 6 2 6 888 99 6 3333333333333333333 3 22 222 9999 4444444444444444 0 99 3333333 11 6 999999999999999999999999 4444 6 888888 0000000 000 5 6 6 1 99999999999999999999999999999999999999999999999999999999999 0 7777 0 444 6666666666 99999999 0 8 66 8 777777777777 0 55555 1 33 00 0 11 0 555 0 777 3333333333 0 1 2 0 0 3 33 33 2 9999999 333333333333333333333333333 3333 000 1 6 11 333 8 8 5 8 222 11 444 99 8 1 6 11 5555 66666666666666666666666666666666666666666666 8 999999 0 3333 66 2 6 7777 8 77777 4444 9 6666666666 99 1 1 6 1 6 33 7777777777777777777777777777777 3 77 6666666666666 8 222222 0 0 3 55 6666 6 000000 99 6 6 6 4444 7 1111111 2 77 1 77 88 0 0000 333333333333333333333333333 11111111 6 4444 7 6 6 6 6 9999999 00 111 6 6 9 6 7 111111 5 5 5 77 77 5 77777777 5 5 6 55 6 6 333 888 5 5 222 1 1111 77 1 2222 5 5 77 1 999 555 5 3 5 5
lowQualScore : . .. . . . ..... .. .... ... . . . .... .. .. ..... ......... .. ..... . ....... .. . . . .. ................ . . . ....... . . . .. . . .. .... . ... . . . ........ . ............................................................ ..... ............. . . . . . . . ....... . .... . ...... . .. ... . . .. ....... .. . . ........... .. ..... ... . . .. . . . . . .... . . .. . . . . . . ....... . . ...... . ... . ..... . ...... . . . . . . . . . . ...................................... . . ... . . . . ... .. . ................... . .. ... .... ................ . .. ....... .. . ........................ .... . ...... ....... ... . . . . ........................................................... . .... . ... .......... ........ . . .. . ............ . ..... . .. .. . .. . ... . ... .......... . . . . . . .. .. . ....... ........................... .... ... . . .. ... . . . . ... .. ... .. . . . .. .... ............................................ . ...... . .... .. . . .... . ..... .... . .......... .. . . . . . .. ............................... . .. ............. . ...... . . . .. .... . ...... .. . . . .... . ....... . .. . .. .. . .... ........................... ........ . .... . . . . . ....... .. ... . . . . . ...... . . . .. .. . ........ . . . .. . . ... ... . . ... . .... .. . .... . . .. . ... ... . . . .
lowQualScore : 7 22 7 5 7 66666 99 1111 000 3 7 7 7777 11 99 33333 333333333 00 00000 7 5555555 22 0 6 0 00 6666666666666666 0 8 0 8888888 0 0 0 88 2 5 88 8888 0 000 0 0 0 88888888 5 000000000000000000000000000000000000000000000000000000000000 55555 5555555555555 5 2 0 5 0 5 0 5555555 0 2222 0 888888 8 00 000 8 0 00 0000000 00 0 0 00000000000 55 00000 555 2 2 88 5 0 0 0 8 8888 4 0 00 0 0 0 8 2 0 8888888 2 7 333333 5 555 7 77777 7 222222 7 7 7 7 7 7 7 7 7 7 77777777777777777777777777777777777777 7 7 777 7 7 5 7 333 22 7 8888888888888888888 2 33 777 0000 0000000000000000 8 00 2222222 00 7 999999999999999999999999 2222 7 555555 2222222 888 7 7 7 7 66666666666666666666666666666666666666666666666666666666666 8 0000 8 000 0000000000 00000000 8 0 88 0 888888888888 0 88888 0 88 22 2 00 0 000 0 555 5555555555 0 2 5 0 0 2 88 88 5 5555555 000000000000000000000000000 5555 555 4 4 00 000 0 0 0 0 888 00 000 44 0 4 0 00 2222 22222222222222222222222222222222222222222222 0 000000 0 8888 00 5 5 5555 0 88888 2222 3 0000000000 22 0 0 7 5 7 22 5555555555555555555555555555555 2 77 8888888888888 0 222222 8 8 3 88 7777 7 555555 22 7 7 7 2222 3 7777777 3 99 4 99 77 6 6666 777777777777777777777777777 55555555 7 2222 3 7 7 7 7 5555555 55 777 7 7 8 7 3 777777 7 7 7 99 99 7 99999999 7 7 7 88 7 7 222 999 7 7 999 4 3333 99 4 1111 7 7 99 4 999 777 7 7 7 7
consensus : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAACATAGNCAACAT------AT---GA-C-ATG---CCCC--AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GA-CAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGAAACA-CC-GCCC-------CCCTGTCGGAATCG-GTAAAC--NCG---NT-TCGA---C-TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-G-T-AG-CCATT----CTTGTTTTTG-AG-A-AC-AAAAAAA---C--TATACTTAAGTC-TTGC---T-AT-GAA-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
Reference ( family-3473 ) : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAACATAAGCAACAT------AT---GA-C-AT----CCCC--AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAG-GCA----A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TACGA-CAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGGAACA-CCCGCCC-------CCCTGTCGGAATCG-GTAAAC--GCG---NT-TCGA---C-TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-G-T-AG-CCATT----CTTGTTTTTG-AG-A-AC-AAAAAAA---C--TATACTTAAGTC-TTGC---T-AT-GAA-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
gi|1 : ATGACAATAGAACAATAAAAATTCACTCAGCACAAAAATTTTGAAATTC--TCAGAAATCATAAAAAAACATAATTCTCAGA-T-GCA--GAACTTACAAATATTAACAACA---AT----TTGAGACCCATTTAAACA-GACTTGAGAATAATTAAACTT--AGCTTGAGAAAAAAAACAC--CCTAACCGATAC-CACTCGAGAACAATTTTCTTGCACCACGACACT-G-T-AT-CT-AAGC-TGAAATTTTG-AACTACCCT---CTCGTAAAT-TTAACG-GTAATAAAAAAA--GAT--TCAGCAACAT------AT---AAAC-ATGG--CCCC--AAAAGCGTCGGC----CAAAATCT-----CTATTTTTTCC---GGGGGGCGGCGGAGCGCGATT-GTAACACACCGCACCGATGC-TAATAAGAAA-TGGCCG-T-ACTTTGCAATTT----TTTTCCCCAAAAAACATTTGAGGCACTACATATTCAGACAAAATCAACAAAAGGTTTTAAACAGGCTACTGTTCATCAT--TAC-ACATAACATAGTA-CAATGACTAAG--CTA-CACAAATACATT---TGA--CATAATTTTACTAATTCGTTTGCATC-CACC-ACTCAAT-CTCAACGGGAGA--TCA-ATTCTGCTTCAGTTGAA--------------------GTTTAAATTTAG-CAGGCCCCAATTCACCTTCTTTCTAAGTTTGT-ACGCTTTT-AGCCAATA------TTTTTGT-ATATAG-CTTCTA-AATTCTCTATTCTAAAAAGT-AACTTTCAA------------------A--------------C-ATT---TATTTGAAGCA-CTTTTATTGAACA-TGA-GCAGCGACATTATTCAAAA--AGGTCAAAGGCC------AGT-GTCATTACGTAGACGATAGGCATTGTTG--TTGTTACA---------------------------TATCCAATTAGG-GAA-GCGGACCACTGAGTGCAACTATGA-------TCAGGGCGAAA------GC----CCATT--TTAGAGGTAAAGTTTACAAA-TCTAACTCCTCAACGCAAGATATTCTCCTGACTTGAATATTGT---TATTAGACTTAAAGTAT--ATCATCTGAGGCA--CT---TTAGCAAGATTTCCC---CCCCCCCCTTTAA------GGCT--------TTCCTTTTAAATAGTTTAATTCAATCA-------CTTGGTAAGG-ATG-TGT-TGCC--ACTAAAGCCTAAAAGAAAGAACAA--ATAACAGGCATAAATTCTCCTAAA--ACTCACTATCCACTTATATTGTGTTGCTAACA-AT--CCA--C-------ATTAAACGAGCGAA-------AAAAAGCA----AATCG-AAGGTAGC-CACCCGC--CGGC-CT-GACA-TTTCCCCTCCCGGCCTGCAGCTTTCTCGAAGATAT-TTTCA-AACCGTCAACGAATCGATTGCTCATCAAGAAGTTGTAT-G-GACTC-GGG-TA-AGC--TAT---AAAATC-TC--AAAAGCA-CAGAA--AGCAGTGACAGTATGGG-T--GACCAAGGCCAT-AT--TTC----CTCCTTCAAC----A-AATTCCCCCCTGGATTTGCATAACA-ACGGACATGAAACA-CCACCCCACCTACTCCCTGTCGGAATCA-GGAAAC--ACG---GTATCGA---C--CAATAAAGGCCGA--GG-GCAAT-CTGTTGA-CATCCC--GAACACACCTCGCGG-GACA----AGTAAA-------CCTTG--CCAGATTCATTCATCGATTATCTC---------------TAC-----AA--TGTACAACATG-T-AG-CCACT----CTTGTTTATG-AG-ACAC-AAAAAA-------TATACTTAAGTCGGTGCATAT-AT-GAATCCAAACTTAA-GCA--TTTATTTC-A-TTGCT--GAAAGTACCGAAATTTGTAC------TG-A-GAATCTTTTTCAT-GG-TCTCA-AC-TTTTTTCTCATACTT-GAGACAAAAAATATGA-ACATTTTCTGAGAAAAA-AAAAACA-TTCGAGTTTGAGAA-T-CTTTTATTGTCT---GAGAAT-T-GTTT-TA-TGGT
gi|10 : aACCATAAAACAATAAAT-TCT--TCAG-ACAA---TTTTGT--T-C--TCAGAA----TAAAAAA---TACTTCTCAGC-T-G-AG-GAACTT-CA--TAT------AA---AT----T---GAGACAT--AAACA-GACTTGAGAATT-TTC--CTT--AGCT-GAG---AAAAA-AC--CT----CG-TACTT----GAAGACT-TTTTTTT
gi|11 : tgaGCCAC--CG---CCCGA-A-TTTCCC-TACCAG-CAGTAT--TCCTGGAA---AT-GTTGA-GGCTGTC-TCCAATT-A--GC---------AGC----T-G-GG-TC-GCT-CC-GGT--TGCCA-AAAACC-TC--
gi|12 : acccacggggaatgcgatgacatttctgaatgcgctcactagcaacgtgT--CTC----CTTCTC---C----A-AAT--GCCCCTGGA-TGGAATCGTGTA--AATACAAAATA----GTCC-------CCC-GCCGAAATCT-GTA
gi|13 : acaatgccatgttcctctttgTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-CTCAACTTG-A-GAAccgttcaaaaggctccacatcgtca
gi|13 : TTTT--TTCATTCTGAG----TACGAAA---TTTGTCTCAAC-TTG-A--GAAA---AA--TAT----GAAA---TT----CGGAGAGA-A---AAACATGAGTTGAGAATT-TT---TTT--aaatatgaaattcggagagaaaaacatgagttgagaattttttttttgtctgaaaattgttttatggtggt
gi|13 : AA-ATTTGTCTCA-ACTT-G---AGAAAAATAT-G-AAA--TTCGGAG----AGAAAAACA-T--GAG-TTGAGAATT-TTTTTTTTGTCT---GAAAAT-T-GTTT-TA-TGGTGtttgtctgaaaattgttttatggtggt
gi|14 : ttttttcattctgagtacgA-TATGA-------A---------A------GC----C-ATT--T---AGGTAAAGTTTC---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------G-------------TGAA--------------------------TTAT----ATTACCC---CCCCCCCCC--AA------GGCT--------TTCCTTTAAAAT-GTTTA--TCAAT-A-------CTgt
gi|16 : tatgAA-GT-AACTTTCAACTT--------------------------------------TATTTGAAGCA-TTTTCA---AA-A-TGATTCAGGAG-ATTATC---AA--AGGTCAA-GGCC-------G--GT------GCAGCCGATGGATGTTGTTG--TTGTTACAA-A--TTA
gi|17 : TTAAATT-AA-CGG--CCCAATTCACT--CTTTCTAAGTTTGT-G-----TT-AGCAACTACATGTATTTT-GT-AT-TAG-CT-CCA-A-TTCTCTATTCTAAAA-GT-AACTTTCAAC
gi|18 : CATACTACCATAAAA-TAC--TCAG-AAAAAA-TTTCAT--T-C--TTGGAA----TAAAAA----TAATTTTCAGT-T-G-C--GAAATT-CA--TCT----AGAATTCATGCCATGAAGAGA
gi|19 : T-TCGA-----TCAATAAA-GGCGA--GG-GG-AT-CTG-TCC-GGTTCC--GAA-ACACC-CACGG-GGCAAGCTAGTAGACCTAAGTCCTTG--CC-GAT--A-TCGTCG---ATTTC-----------GTTt
gi|2 : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAGTTCTCAGCTT-G-AGTGAACTT-CA--TAT----AAAA---AT----TGAAGAGACAT--AAACA-GATCTGAGAATT-TT---CTT--A-CT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACA-C-G-T-ATGCTAAAGCTTGA--TTTTGGAACT--CTTCTGCT-GTAA-T-ATAA-G-GCA-TAAAAAAAAGGAACATAAGCAACAT------AT---GA-T-A-------AC--AG-------GCC----CA---------------TTTTTCCGGGGGGGGGGGGGGGGG---GGTTAA----ACAACATAC-GATGCATTATAGAAAA-TG--TT-T-ACTTTG-AATGTCCCCCCCCCCCCCCAACGCATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAG--T-C-ACAT-ACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTTGTTTG-ATCACACC-ACTTAAT-CT-AAGGCGAGGACTCA-AT-CTGCTTCAGTTGAATACCAT-CAGAGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTCT-TTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TTG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AAATTTCAACTT-AAAT-----ATCTGAAT------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGATGTTGTTGAAACATTACAA-A--TTAAT----ATACGG-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------T---------A------GC----C-ATT--T---AGGTAAAGTTTA---ACTCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CA---TTAT----ATTACCC---CCCCCCCTT--AA------GGCT--------TTCCTTTAAAAT-GTTTACTTCAAT-ACTAGCGCCTTACTTGGGCATG-T-T-TGCA--AATAAAGTCTAAAGGAAAGAA-AA--CTAACAG-CA---ATTCTCCTAAATTCCT-----TCCA-TTGTTTTGTGT-GC-AACATCT--CAA--CGGGAATTATTAAACG--CGAT-------AA---GCA----A-TCGCA-GGTAGC-CCACCGCCGCGGCTCCCGA-A-TTT-CC-TCCCGGTCTGCAG--TTCTCAGA---AT-ATTCAGAACCGTCACCT-ATCAA--GC---------AGTTGTGT-ATGA-TCAGGTCTACGATTATAC---AAGATC-TCCTAA--GCA-CAGCACTAGT--TGACAGTATGGGTTGCGA--AAGGCCATAATAATTC----CT-CTT---C----ATAAT--CC-----GA-TC------CG-A---------------CTACCC-------ACCTGTC-GAATCGCGT-TAT--TCG---CT-TCGA---TGTCAATAAA-GCCAG--GG-G--AT-CTG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGT--A-------CCTTG--CCGGAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-GTT-AG--CACT----CTTG-TTTTG-AGCA-ACAAAAAAAA---C--TATACTT-AGTC-TTGC---T--T-GAA-CCAAAC-TAA-G-A--TTTTCTTCTA-TT-CTTGG--AGTA-GAGAATTTGT-C------TG-AGGAATCTTTT--AT-GGACCTCACAAGATTTTTCTCA-ACTTAG-GAAGAAAAATATTGAAAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-TGTTTTTTTTG-CT---GAGAAT-TAGTAT-TATCAGTGTCAT
gi|20 : GA-CAAGGCCATA----TTC----CTC-TT---C----A-AAT--CCCCTTGGA-TTGCATTAC--A--GACAT-GAACA-C---ACC-------CCCTGTCGGAATCG-GTt
gi|22 : tCCCAAAACATTTGAAG-A-TG-ATATTCAGA--ACATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA
gi|23 : tttATGACCATAAAACAATAAAA-TTC---GAG-AC--AA-TTTTG---TTC--TCAGAA----TA
gi|3 : tATGACCATAAAACAATAAAA-TTC--TTAG-A-AAAA-TTTTGT--T-C--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACT--CA--TAT----AAAA---------TGGACCAAT-C--AAACA-GACT-GAGAAT-------CTT--AGCT-GA--AAAACAG-CC--CT----CGT--C-T-----AGAACT-TTTTTC--CAC-ACGCCAAC-GGT-AT-CT-AAGC-TGA--TTT-GGAACT--CT----CT-GTAA-TGATAA-GAGTA-TAAAAAAA-----CATAGCCAACATTAAACAATCTCGA-A-ATATGGCCCA--AGA---GTCGGC----CA-----T-----TT-TATTTTC-----GGGGGGGGGGGGG---TGT-------ACAA-GC-----CGTATCATAGAAAAGTG--TTGT-ACTTGA-AATTT----TTT---CCCCAAAACATGAAAGG-A--A-ATAT-CAGA--AAGTCAACAAA---TTTTAAA-AGGT--CTGTTCATCAT--T-CCACATAACAT-GTA-TA--------G--CTA--ACAA-----TTATTTGATACATATT-CTA--ATGC--TTTG-ATC-CACCCAC-CAATTCT-AAGG--AGA--TCA-AG-TCGCTT-AGT-GAATACCAT-CAAGGAAG--TA---TTAAATT-AGTCGG--CC-AATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAC-CT-CTCCA-TTCTCTAT-CTAAAA-GT-AACTT-CAACTT-A--------------------------------------TTTCGAACA-TTTA-A---AA-A-TGAT-CAGGGA-ATTATC---AATAAGGTCAA-GGCC------GGTGGT-------CAGACGATGG-TGTTGTTG--TTGTTATAA----TTAAT----ATA--GGA-GATATA-CCA--TAGGT-AA-G-GAGCC--TGA-TGCAA-TATGA-------A---------ATAGAAAAC----C-ATT--T---AGGTAAA-TTTA---A-TCTAAT--CT--A-AAAAGA-AT-CT---------------GTACAT----GAAATGGA---TTAGT-----GG---A--TAGAATTAT----ATTGTCCTTGCCCCCCCCT--TA------AGCT--------TTCCTTTAAAAT-GTTTA-TCAAAT-A-----------CTTAGG-ATGAT-T-TGAATGAAT-AAGCCTAAAAAAAAGAA-AAAGTTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATCTTGTGT-GC-AACATCT--CCAACCGGGAA--AAAAAACGG-CG-A-------AAAG-GCA----ATTCG-A-GGTA-T-CCACC-C--CG---CCCGA-A-TTTCCC-TCCCGGCTCGCAG--TTCTCGAG---ATAATTCA-ACCTTTCACCTGATCGA--GCTATCA---AGGTTGTATGG-GA-TC-GGTATA--AT---------AAATCATC--AA--GCACCAG----AGCA-TGACA-TATGGG-T--GA-CAAAGCCATA-----TC----CT-CTT---C----A-AAT--CCCCCTGGA-TTG-ATCACG-G--GACATGGAACACCCCCCCC-------CCCTGTCGG-ATCG-GTA-----GCG----T-TCGA---T-CAAATAAATGGCGATTGGCG--AT--CG-TGC--GTCCC--GAA-ACCGC-CACGG-GGCC----AGT-AA-------CC--G--CC-AAT--A-TCAACG-----TTC-----------G--TTAC-----AGA-TGTAC-ACA-G-TAAG-CCATT----C-TG---TTG-AG-A-A--AACAAAA---CCATATACTTAAGTC-CTGC---TAAT-G-A-CCAAACTAAATG-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TGAA-GAAC-TTTT--AT-GG-TCTT-CAA-A-TTTTCTCA-ACTT-T-GAAGAAAA--GTAG-AAA--TTC-GAT----G-AAAAACA-T--GAG-TTGAGA-----TTTTTTTGTCT---GAGAATATGGTTTGTAT
gi|4 : ATGG-------A---------A------GC----C-ATTAATG--AGGTAAAGTTAT---A-TCTAA------AG-GCAGGA-GTCCT------------------------------------T--AT-----GA---AATCT---TT-T----AT-ACCC---CCCCCCCCC--CACCCCCCGGTTAAATCAAATGCC---AAACT-GTTTA-TTTAAT-A-------CTTG--TAGG-ATA-C-TATGAA--AATG--------------GAA-AA--TTACCAG-CA---ATTCTCCCGAAAGCCC-----TCCA-TCACTTTAT-T-GC-AACATCCACCCA--CGGGGG--A--AAGCGA-TGAACATCTCTAAAT-GCGCATCA-CCA-A---CAACGTCGCCAC--CG---CCCGA-AATTTGCC-TACCAGCA-GCAT--TTCTTGAA---AT-GTTGA-GGCTGTCTCCCAATT-A--AC---------AGC----T-G-GG-TC--CT-CC-GGT--TGCGCAAAAACC-TC---A--GCA-TAGT---AGTAAGGA-AACATGGG--A-GA-CAGAGCCATGTT--CTCTTGTCTCCCT---CTCCAG-AAT--GGTCATGGA-TGGCATCGTGTA--GATACAAGATG--GTGCCT-------C---GCCGAAATCT-GTAATCTTTCAAATAT-TCGACATC-TC-AT-AA-GCTAAC-GG-T--AT-CCA-CTC-GGTCTC--GGA-ACACC-CGTGGAAGCA----GGCAAA-------GCCTGGACC-GAT--AC-CTTCT--TGTTTC---------------TACGTAAAAGTCTGTGCA--G-G-C-AGCCCATT----TTTATTTTTGCAG-A-AC-----AAATTTT--TATACTTAAGTC--TGC---T-ATGGGA-CCAAACTTAA-G-AATTTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGTGC------TG-A-GAATGTGTT--ATCGG-TCT--CAA-ATTTTTCTCA-AGTT-G-AGAATAAAATAAAA-GAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA----TTTTGTTATCTA--GAGAAT-TGTTTT-TATTGGTg
gi|5 : cgaaAACAAA---TTT--AA-AAGT---TGTTCATCAAAGT-A-ACATT-CAT-GTAATA--------GAGCTAACGCAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CATC-ACTTAAT-CT-AAAGGGAGA--TCACAT-CTGCTTCAGTTGAATA-CATGCAAGGAAAAAT-AGTTT--ATT-AG-CGT--CCCAATTCAC-TTCTTTCTAAGTTTGTGG-----TTAAGCAACTA--------TT-GCAAT-TAGCCT-CTA-A-TTCTCTATTC-AAAA-GTAAACTTTC--CTT-AAATA----ATCTAAG-------------CTATT---ATTTTGAAGCATTTTTTA---AA-ATTGATGCAGGGG-ATTATCA--AA--AGGTCAA-GGCC-------G--GT------GC-GACGATGGATGTTGTTG--TTGTTACAA-AACTTAATTTTAACC--G-AGGATATATCCAT-TAGGTGAAGG-GGACC--CGAGTGCAA-TATGA-------T---------A------cat
gi|6 : AA-GCTAA--CG-G--ATTCCA-CTCCGGTCTCTCGGA-ACACT-CGTGG-AGCA----GGCAAA-------GCCTG--AC--AT--AC-CTTC---TGTTTCTATGCGTAAACGTCTT--------G--TGCACAG--------A-CCATT----TTTATTTTTG-AG-A-AC-AAAATTT---C--TATACTTAAGTC--TGC---T-AT-G-A-CCAAACTTAA-G-A--ATTTTTTC-ATTT-CT--G--AGTA-CGAAA-TTGT-C------TG-A--AATGTTTTC-AT--G-TCTCA-AA---TTTTCTCA-AGTT-G---AGAAAAATAAAG--AA--TTCTGAG----A-AAAAACATT--GAGATTGAGAA-T-TTTTTTATGTCTTTAGAGAAT-TGTTTT-TAATGG-GTCATt
gi|7 : tcatggatggctcgtagtagataccaagtatggtttgcctcgcccgaagatcatgtacctttcaatagcgctcaacatgtcatTTTG-ATC-CACC-ACTCAAG-A--AAAGGGAGA--GCA-TT-CTGCTTCAGTAGAATATCAT-CAAGGAAAAATAAC----ACTT-TG----------ATTCACTT-CTGCCTAAGTTTGT-G-----AT-AGGAACTA------TTCC-GA-AT-TAG-CT-CTT-A-TTCTTTATTCTTAAG-GT-AACTTTCAAATTAAAATTGTAAATCTGACACACGCAGCAGATCCATTTAATATTTGAAACC-TCTTTT---AA-A-TGATGCAAGGG-ATTTTC---CA--AGGTCAA-GGCCAATTCAGA--GT-------CAG-CGATGTACA--ACCA---TGTTACAATA--TTAATC---ATA---------ATATT---------------GGACC--GGAGTGCAA-TATGACATACGGA---------A------GCCATAC-ATT--T---AGGTAAAGTT-------TCT-GT--CTTAA-GAAGGA-GTTTT---------------G----T----AACTTGAT---T--AT-----Gaggccct
gi|8 : ---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA----T----TG---AGACCT--A--CA-GACTTGAGAATT-TT---CTTTTAGCT-GAGAAAAAAAA-ACACCT----TGT-AC-T----GAGAACT-TTTTTTTGCAC-ACGACAGCGG-TAAT-CG-AAGC-TGA--TTTTGGAACT--CTTG--CT-GTAA-T-ATAA-G-GTA-TAAAAA-----AACATAGCCCACAT------TA---AA-CTAT----TCTCTGAGA---ATTGGCAAAACA-----CTTTTATT-TTTTTTCC---TGGGGGGGGGGGGG---G--T-A----CAAACACAC-GATGC-TAATA-GAAA-TG--TG-TAACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGGAA-TA-ATATTCAGT--AAAACAA
gi|9 : TTG--TC-GAT--A-TCATCG---ATTTC-----------GTT--AC-----A---TGTACA-CA-G-T-AG-CCATCTTAGCTTGTTTT-G-AG-A-AC-AAAAAAA------TATACTTAAGTC-T-GC---T-AT-GAA-CCAAAC-------------------A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCT--CAA-ATTTTTCTCA-ACTT-G---AGAAACCTAT-G-AAA--TTCTGGG----A-AAAAACA-T--GAG-TTGAGAA---TTCTTTTTGTCT---GAGAAT-T-GTTT-TA-TGGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATGGATGGCATCGTGTAGATACAAGATGGTGCCTCGCCGAAATCTGTACCTTTCAAATAGCTCAACATCGTCATAAGCTAACGGATCCACTCGGTCTCGGAACAC
Unaligned ( gi|21 ): CAAGGTCGCCACGCCCAATTTTTCCTTCCGGCTGCCATCCCTAAATGTTACAGCTGTCTCCTATTAAAGCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 1111 111 1111 11111 222222222 11111 1111111 11 2222222222222222 1 1111111 1 1 1 11 11 3333 1 111 1 1 1 33333333 222222222222222222222222222222222222222222222222222222222222 22222 5555555555555 1 1 1 2222222 1 2222 111111 11 111 11 2222222 11 1 1 44444444444 11 22222 111 11 1111 11 1111111 11111 111111 33333333333333333333333333333333333333 111 111 4444444444444444444 111 1111 5555555555555555 11 1111111 11 444444444444444444444444 1111 111111 2222222 111 22222222222222222222222222222222222222222222222222222222222 1111 111 2222222222 22222222 11 222222222222 1 11111 11 11 1 111 1 111 3333333333 1 1 1 11 11 1111111 444444444444444444444444444 1111 111 11 333 111 11 111 11 1111 99999999999999999999999999999999999999999999 111111 1 3333 11 2222 22222 1111 1111111111 3333333333333333333333333333333333 4444444444444 333333 1 11 1111 111111 1111 2222222 1 11 2222 666666666666666666666666666 22222222 1111 2222222 22 111 111111 11111111 11 222 222 1111 1111 1 111 111 1 1
lowQualScore : 6 99 6 2 6 22222 77 2222 000 0 5 5 3333 77 77 22222 555555555 66 55555 6 8888888 99 8 5 8 11 1111111111111111 8 0 0 5555555 0 0 0 33 3 2 33 0000 0 111 0 0 0 33333333 3 11 444444444444444444444444444444444444444444444444444444444444 22222 2222222222222 2 3 0 5 1 6 0 0000000 0 1111 7 777777 0 11 444 0 8 11 2222222 33 0 0 00000000000 22 55555 777 3 3 33 6 8 8 8 0 1111 1 5 11 8 8 6 0 8 8 8888888 3 6 999999 2 666 6 66666 6 999999 6 6 6 6 6 6 6 5 5 0 33333333333333333333333333333333333333 6 1 111 6 6 2 6 888 99 6 3333333333333333333 3 22 222 9999 4444444444444444 0 99 3333333 11 6 999999999999999999999999 4444 6 888888 0000000 000 5 6 6 1 99999999999999999999999999999999999999999999999999999999999 0 7777 0 444 6666666666 99999999 0 8 66 8 777777777777 0 55555 1 33 00 0 11 0 555 0 777 3333333333 0 1 2 0 0 3 33 33 2 9999999 111111111111111111111111111 3333 000 1 6 11 333 8 8 5 8 222 11 444 99 8 1 6 11 5555 66666666666666666666666666666666666666666666 8 999999 0 3333 66 2 6 7777 77777 4444 9 6666666666 99 1 1 6 888 7777777777777777777777777777777777 3 77 1111111111111 8 222222 0 0 3 55 6666 6 000000 99 6 6 6 4444 7 1111111 2 77 1 77 88 0 0000 333333333333333333333333333 11111111 6 4444 7 6 6 6 6 9999999 00 111 6 6 9 6 7 111111 5 5 5 77 77 5 77777777 5 5 6 55 6 6 333 888 5 5 222 1 1111 77 1 2222 5 5 77 1 999 555 5 3 5 5
lowQualScore : . .. . . . ..... .. .... ... . . . .... .. .. ..... ......... .. ..... . ....... .. . . . .. ................ . . . ....... . . . .. . . .. .... . ... . . . ........ . .. ............................................................ ..... ............. . . . . . . . ....... . .... . ...... . .. ... . . .. ....... .. . . ........... .. ..... ... . . .. . . . . . .... . . .. . . . . . . ....... . . ...... . ... . ..... . ...... . . . . . . . . . . ...................................... . . ... . . . . ... .. . ................... . .. ... .... ................ . .. ....... .. . ........................ .... . ...... ....... ... . . . . ........................................................... . .... . ... .......... ........ . . .. . ............ . ..... . .. .. . .. . ... . ... .......... . . . . . . .. .. . ....... ........................... .... ... . . .. ... . . . . ... .. ... .. . . . .. .... ............................................ . ...... . .... .. . . .... ..... .... . .......... .. . . . ... .................................. . .. ............. . ...... . . . .. .... . ...... .. . . . .... . ....... . .. . .. .. . .... ........................... ........ . .... . . . . . ....... .. ... . . . . . ...... . . . .. .. . ........ . . . .. . . ... ... . . ... . .... .. . .... . . .. . ... ... . . . .
lowQualScore : 7 22 7 5 7 66666 99 1111 000 3 7 7 7777 11 99 33333 333333333 00 00000 7 5555555 22 0 6 0 00 6666666666666666 0 8 0 8888888 0 0 0 88 2 5 88 8888 0 000 0 0 0 22222222 2 22 222222222222222222222222222222222222222222222222222222222222 55555 5555555555555 5 2 0 5 0 5 0 5555555 0 2222 0 888888 8 00 000 8 0 00 0000000 00 0 0 00000000000 55 00000 555 2 2 88 5 0 0 0 8 8888 4 0 00 0 0 0 8 2 0 8888888 2 7 333333 5 555 7 77777 7 222222 7 7 7 7 7 7 7 7 7 7 77777777777777777777777777777777777777 7 7 777 7 7 5 7 333 22 7 8888888888888888888 2 33 777 0000 0000000000000000 8 00 2222222 00 7 999999999999999999999999 2222 7 555555 2222222 888 7 7 7 7 66666666666666666666666666666666666666666666666666666666666 8 0000 8 000 0000000000 00000000 8 0 88 0 888888888888 0 88888 0 88 22 2 00 0 000 0 555 5555555555 0 2 5 0 0 2 88 88 5 5555555 000000000000000000000000000 5555 555 4 4 00 000 0 0 0 0 888 00 000 44 0 4 0 00 2222 22222222222222222222222222222222222222222222 0 000000 0 8888 00 5 5 8888 88888 2222 3 0000000000 22 0 0 7 000 5555555555555555555555555555555555 2 77 3333333333333 0 222222 8 8 3 88 7777 7 555555 22 7 7 7 2222 3 7777777 3 99 4 99 77 6 6666 777777777777777777777777777 55555555 7 2222 3 7 7 7 7 5555555 55 777 7 7 8 7 3 777777 7 7 7 99 99 7 99999999 7 7 7 88 7 7 222 999 7 7 999 4 3333 99 4 1111 7 7 99 4 999 777 7 7 7 7
consensus : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAA-CATAGNCAACAT------AT---GA-C-AT---G-CCCC-AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GACAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGAA-ACA--CCGCCC--------CCCTGTCGGAATCG-GTAAAC--NCG---NT-TCGA---C-TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-G-T-AG-CCATT----CTTGTTTTTG-AG-A-AC-AAAAAAA---C--TATACTTAAGTC-TTGC---T-AT-GAA-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
Reference ( family-3473 ) : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAA-CATAGNCAACAT------AT---GA-C-AT---G-CCCC-AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GACAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGAA-ACA--CCGCCC--------CCCTGTCGGAATCG-GTAAAC--NCG---NT-TCGA---C-TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-G-T-AG-CCATT----CTTGTTTTTG-AG-A-AC-AAAAAAA---C--TATACTTAAGTC-TTGC---T-AT-GAA-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
gi|1 : ATGACAATAGAACAATAAAAATTCACTCAGCACAAAAATTTTGAAATTC--TCAGAAATCATAAAAAAACATAATTCTCAGA-T-GCA--GAACTTACAAATATTAACAACA---AT----TTGAGACCCATTTAAACA-GACTTGAGAATAATTAAACTT--AGCTTGAGAAAAAAAACAC--CCTAACCGATAC-CACTCGAGAACAATTTTCTTGCACCACGACACT-G-T-AT-CT-AAGC-TGAAATTTTG-AACTACCCT---CTCGTAAAT-TTAACG-GTAATAAAAAAA--GATTCA---GCAACAT------AT---AAAC-AT---GGCCCC-AAAAGCGTCGGC----CAAAATCT-----CTATTTTTTCC---GGGGGGCGGCGGAGCGCGATT-GTAACACACCGCACCGATGC-TAATAAGAAA-TGGCCG-T-ACTTTGCAATTT----TTTTCCCCAAAAAACATTTGAGGCACTACATATTCAGACAAAATCAACAAAAGGTTTTAAACAGGCTACTGTTCATCAT--TAC-ACATAACATAGTA-CAATGACTAAG--CTA-CACAAATACATT---TGA--CATAATTTTACTAATTCGTTTGCATC-CACC-ACTCAAT-CTCAACGGGAGA--TCA-ATTCTGCTTCAGTTGAA--------------------GTTTAAATTTAG-CAGGCCCCAATTCACCTTCTTTCTAAGTTTGT-ACGCTTTT-AGCCAATA------TTTTTGT-ATATAG-CTTCTA-AATTCTCTATTCTAAAAAGT-AACTTTCAA------------------A--------------C-ATT---TATTTGAAGCA-CTTTTATTGAACA-TGA-GCAGCGACATTATTCAAAA--AGGTCAAAGGCC------AGT-GTCATTACGTAGACGATAGGCATTGTTG--TTGTTACA---------------------------TATCCAATTAGG-GAA-GCGGACCACTGAGTGCAACTATGA-------TCAGGGCGAAA------GC----CCATT--TTAGAGGTAAAGTTTACAAA-TCTAACTCCTCAACGCAAGATATTCTCCTGACTTGAATATTGT---TATTAGACTTAAAGTAT--ATCATCTGAGGCA--CT---TTAGCAAGATTTCCC---CCCCCCCCTTTAA------GGCT--------TTCCTTTTAAATAGTTTAATTCAATCA-------CTTGGTAAGG-ATG-TGT-TGCC--ACTAAAGCCTAAAAGAAAGAACAA--ATAACAGGCATAAATTCTCCTAAA--ACTCACTATCCACTTATATTGTGTTGCTAACA-AT--CCA--C-------ATTAAACGAGCGAA-------AAAAAGCA----AATCG-AAGGTAGC-CACCCGC--CGGC-CT-GACA-TTTCCCCTCCCGGCCTGCAGCTTTCTCGAAGATAT-TTTCA-AACCGTCAACGAATCGATTGCTCATCAAGAAGTTGTAT-G-GACTC-GGG-TA-AGC--TAT---AAAATC-TC--AAAAGCA-CAGAA--AGCAGTGACAGTATGGG-TG-ACCAAGGCCAT-AT--TTC----CTCCTTCAAC----A-AATTCCCCCCTGGATTTGCATAACA-ACGGACATGAA-ACA--CCACCCCACCTACTCCCTGTCGGAATCA-GGAAAC--ACG---GTATCGA---C--CAATAAAGGCCGA--GG-GCAAT-CTGTTGA-CATCCC--GAACACACCTCGCGG-GACA----AGTAAA-------CCTTG--CCAGATTCATTCATCGATTATCTC---------------TAC-----AA--TGTACAACATG-T-AG-CCACT----CTTGTTTATG-AG-ACAC-AAAAAA-------TATACTTAAGTCGGTGCATAT-AT-GAATCCAAACTTAA-GCA--TTTATTTC-A-TTGCT--GAAAGTACCGAAATTTGTAC------TG-A-GAATCTTTTTCAT-GG-TCTCA-AC-TTTTTTCTCATACTT-GAGACAAAAAATATGA-ACATTTTCTGAGAAAAA-AAAAACA-TTCGAGTTTGAGAA-T-CTTTTATTGTCT---GAGAAT-T-GTTT-TA-TGGT
gi|10 : aACCATAAAACAATAAAT-TCT--TCAG-ACAA---TTTTGT--T-C--TCAGAA----TAAAAAA---TACTTCTCAGC-T-G-AG-GAACTT-CA--TAT------AA---AT----T---GAGACAT--AAACA-GACTTGAGAATT-TTC--CTT--AGCT-GAG---AAAAA-AC--CT----CG-TACTT----GAAGACT-TTTTTTT
gi|11 : tgaGCCAC--CG---CCCGA-A-TTTCCC-TACCAG-CAGTAT--TCCTGGAA---AT-GTTGA-GGCTGTC-TCCAATT-A--GC---------AGC----T-G-GG-TC-GCT-CC-GGT--TGCCA-AAAACC-TC--
gi|12 : acccacggggaatgcgatgacatttctgaatgcgctcactagcaacgtgT--CTC----CTTCTC---C----A-AAT--GCCCCTGGA-TGGAATCGTGTA--AATACAAA-ATA----GTCC--------CCC-GCCGAAATCT-GTA
gi|13 : acaatgccatgttcctctttgTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-CTCAACTTG-A-GAAccgttcaaaaggctccacatcgtca
gi|13 : TTTT--TTCATTCTGAG----TACGAAA---TTTGTCTCAAC-TTG-A--GAAA---AA--TAT----GAAA---TT----CGGAGAGA-A---AAACATGAGTTGAGAATT-TT---TTT--aaatatgaaattcggagagaaaaacatgagttgagaattttttttttgtctgaaaattgttttatggtggt
gi|13 : AA-ATTTGTCTCA-ACTT-G---AGAAAAATAT-G-AAA--TTCGGAG----AGAAAAACA-T--GAG-TTGAGAATT-TTTTTTTTGTCT---GAAAAT-T-GTTT-TA-TGGTGtttgtctgaaaattgttttatggtggt
gi|14 : ttttttcattctgagtacgA-TATGA-------A---------A------GC----C-ATT--T---AGGTAAAGTTTC---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------G-------------TGAA--------------------------TTAT----ATTACCC---CCCCCCCCC--AA------GGCT--------TTCCTTTAAAAT-GTTTA--TCAAT-A-------CTgt
gi|16 : tatgAA-GT-AACTTTCAACTT--------------------------------------TATTTGAAGCA-TTTTCA---AA-A-TGATTCAGGAG-ATTATC---AA--AGGTCAA-GGCC-------G--GT------GCAGCCGATGGATGTTGTTG--TTGTTACAA-A--TTA
gi|17 : TTAAATT-AA-CGG--CCCAATTCACT--CTTTCTAAGTTTGT-G-----TT-AGCAACTACATGTATTTT-GT-AT-TAG-CT-CCA-A-TTCTCTATTCTAAAA-GT-AACTTTCAAC
gi|18 : CATACTACCATAAAA-TAC--TCAG-AAAAAA-TTTCAT--T-C--TTGGAA----TAAAAA----TAATTTTCAGT-T-G-C--GAAATT-CA--TCT----AGAATTCATGCCATGAAGAGA
gi|19 : T-TCGA-----TCAATAAA-GGCGA--GG-GG-AT-CTG-TCC-GGTTCC--GAA-ACACC-CACGG-GGCAAGCTAGTAGACCTAAGTCCTTG--CC-GAT--A-TCGTCG---ATTTC-----------GTTt
gi|2 : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAGTTCTCAGCTT-G-AGTGAACTT-CA--TAT----AAAA---AT----TGAAGAGACAT--AAACA-GATCTGAGAATT-TT---CTT--A-CT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACA-C-G-T-ATGCTAAAGCTTGA--TTTTGGAACT--CTTCTGCT-GTAA-T-ATAA-G-GCA-TAAAAAAAAGGAA-CATAAGCAACAT------AT---GA-T-A--------AC-AG-------GCC----CA---------------TTTTTCCGGGGGGGGGGGGGGGGG---GGTTAA----ACAACATAC-GATGCATTATAGAAAA-TG--TT-T-ACTTTG-AATGTCCCCCCCCCCCCCCAACGCATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAG--T-C-ACAT-ACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTTGTTTG-ATCACACC-ACTTAAT-CT-AAGGCGAGGACTCA-AT-CTGCTTCAGTTGAATACCAT-CAGAGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTCT-TTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TTG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AAATTTCAACTT-AAAT-----ATCTGAAT------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGATGTTGTTGAAACATTACAA-A--TTAAT----ATACGG-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------T---------A------GC----C-ATT--T---AGGTAAAGTTTA---ACTCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CA---TTAT----ATTACCC---CCCCCCCTT--AA------GGCT--------TTCCTTTAAAAT-GTTTACTTCAAT-ACTAGCGCCTTACTTGGGCATG-T-T-TGCA--AATAAAGTCTAAAGGAAAGAA-AA--CTAACAG-CA---ATTCTCCTAAATTCCT-----TCCA-TTGTTTTGTGT-GC-AACATCT--CAA--CGGGAATTATTAAACG--CGAT-------AA---GCA----A-TCGCA-GGTAGC-CCACCGCCGCGGCTCCCGA-A-TTT-CC-TCCCGGTCTGCAG--TTCTCAGA---AT-ATTCAGAACCGTCACCT-ATCAA--GC---------AGTTGTGT-ATGA-TCAGGTCTACGATTATAC---AAGATC-TCCTAA--GCA-CAGCACTAGT--TGACAGTATGGGTTGCGA-AAGGCCATAATAATTC----CT-CTT---C----ATAAT--CC-----GA-T----CCG-----------------A--CTACCC--------ACCTGTC-GAATCGCGT-TAT--TCG---CT-TCGA---TGTCAATAAA-GCCAG--GG-G--AT-CTG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGT--A-------CCTTG--CCGGAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-GTT-AG--CACT----CTTG-TTTTG-AGCA-ACAAAAAAAA---C--TATACTT-AGTC-TTGC---T--T-GAA-CCAAAC-TAA-G-A--TTTTCTTCTA-TT-CTTGG--AGTA-GAGAATTTGT-C------TG-AGGAATCTTTT--AT-GGACCTCACAAGATTTTTCTCA-ACTTAG-GAAGAAAAATATTGAAAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-TGTTTTTTTTG-CT---GAGAAT-TAGTAT-TATCAGTGTCAT
gi|20 : -GACAAGGCCATA----TTC----CTC-TT---C----A-AAT--CCCCTTGGA-TTGCATTAC--A--GACATGAACACA------CC--------CCCTGTCGGAATCG-GTt
gi|22 : tCCCAAAACATTTGAAG-A-TG-ATATTCAGA--ACATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA
gi|23 : tttATGACCATAAAACAATAAAA-TTC---GAG-AC--AA-TTTTG---TTC--TCAGAA----TA
gi|3 : tATGACCATAAAACAATAAAA-TTC--TTAG-A-AAAA-TTTTGT--T-C--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACT--CA--TAT----AAAA---------TGGACCAAT-C--AAACA-GACT-GAGAAT-------CTT--AGCT-GA--AAAACAG-CC--CT----CGT--C-T-----AGAACT-TTTTTC--CAC-ACGCCAAC-GGT-AT-CT-AAGC-TGA--TTT-GGAACT--CT----CT-GTAA-TGATAA-GAGTA-TAAAAAAA------CATAGCCAACATTAAACAATCTCGA-A-ATATGG-CCCA-AGA---GTCGGC----CA-----T-----TT-TATTTTC-----GGGGGGGGGGGGG---TGT-------ACAA-GC-----CGTATCATAGAAAAGTG--TTGT-ACTTGA-AATTT----TTT---CCCCAAAACATGAAAGG-A--A-ATAT-CAGA--AAGTCAACAAA---TTTTAAA-AGGT--CTGTTCATCAT--T-CCACATAACAT-GTA-TA--------G--CTA--ACAA-----TTATTTGATACATATT-CTA--ATGC--TTTG-ATC-CACCCAC-CAATTCT-AAGG--AGA--TCA-AG-TCGCTT-AGT-GAATACCAT-CAAGGAAG--TA---TTAAATT-AGTCGG--CC-AATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAC-CT-CTCCA-TTCTCTAT-CTAAAA-GT-AACTT-CAACTT-A--------------------------------------TTTCGAACA-TTTA-A---AA-A-TGAT-CAGGGA-ATTATC---AATAAGGTCAA-GGCC------GGTGGT-------CAGACGATGG-TGTTGTTG--TTGTTATAA----TTAAT----ATA--GGA-GATATA-CCA--TAGGT-AA-G-GAGCC--TGA-TGCAA-TATGA-------A---------ATAGAAAAC----C-ATT--T---AGGTAAA-TTTA---A-TCTAAT--CT--A-AAAAGA-AT-CT---------------GTACAT----GAAATGGA---TTAGT-----GG---A--TAGAATTAT----ATTGTCCTTGCCCCCCCCT--TA------AGCT--------TTCCTTTAAAAT-GTTTA-TCAAAT-A-----------CTTAGG-ATGAT-T-TGAATGAAT-AAGCCTAAAAAAAAGAA-AAAGTTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATCTTGTGT-GC-AACATCT--CCAACCGGGAA--AAAAAACGG-CG-A-------AAAG-GCA----ATTCG-A-GGTA-T-CCACC-C--CG---CCCGA-A-TTTCCC-TCCCGGCTCGCAG--TTCTCGAG---ATAATTCA-ACCTTTCACCTGATCGA--GCTATCA---AGGTTGTATGG-GA-TC-GGTATA--AT---------AAATCATC--AA--GCACCAG----AGCA-TGACA-TATGGG-T--GACAAAGCCATA-----TC----CT-CTT---C----A-AAT--CCCCCTGGA-TTG-ATCACG-G--GACATGGA-ACACCCCCCCC--------CCCTGTCGG-ATCG-GTA-----GCG----T-TCGA---T-CAAATAAATGGCGATTGGCG--AT--CG-TGC--GTCCC--GAA-ACCGC-CACGG-GGCC----AGT-AA-------CC--G--CC-AAT--A-TCAACG-----TTC-----------G--TTAC-----AGA-TGTAC-ACA-G-TAAG-CCATT----C-TG---TTG-AG-A-A--AACAAAA---CCATATACTTAAGTC-CTGC---TAAT-G-A-CCAAACTAAATG-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TGAA-GAAC-TTTT--AT-GG-TCTT-CAA-A-TTTTCTCA-ACTT-T-GAAGAAAA--GTAG-AAA--TTC-GAT----G-AAAAACA-T--GAG-TTGAGA-----TTTTTTTGTCT---GAGAATATGGTTTGTAT
gi|4 : ATGG-------A---------A------GC----C-ATTAATG--AGGTAAAGTTAT---A-TCTAA------AG-GCAGGA-GTCCT------------------------------------T--AT-----GA---AATCT---TT-T----AT-ACCC---CCCCCCCCC--CACCCCCCGGTTAAATCAAATGCC---AAACT-GTTTA-TTTAAT-A-------CTTG--TAGG-ATA-C-TATGAA--AATG--------------GAA-AA--TTACCAG-CA---ATTCTCCCGAAAGCCC-----TCCA-TCACTTTAT-T-GC-AACATCCACCCA--CGGGGG--A--AAGCGA-TGAACATCTCTAAAT-GCGCATCA-CCA-A---CAACGTCGCCAC--CG---CCCGA-AATTTGCC-TACCAGCA-GCAT--TTCTTGAA---AT-GTTGA-GGCTGTCTCCCAATT-A--AC---------AGC----T-G-GG-TC--CT-CC-GGT--TGCGCAAAAACC-TC---A--GCA-TAGT---AGTAAGGA-AACATGGG--A-GACAGAGCCATGTT--CTCTTGTCTCCCT---CTCCAG-AAT--GGTCATGGA-TGGCATCGTGTA--GATACAAG-ATG--GTGCCT--------C---GCCGAAATCT-GTAATCTTTCAAATAT-TCGACATC-TC-AT-AA-GCTAAC-GG-T--AT-CCA-CTC-GGTCTC--GGA-ACACC-CGTGGAAGCA----GGCAAA-------GCCTGGACC-GAT--AC-CTTCT--TGTTTC---------------TACGTAAAAGTCTGTGCA--G-G-C-AGCCCATT----TTTATTTTTGCAG-A-AC-----AAATTTT--TATACTTAAGTC--TGC---T-ATGGGA-CCAAACTTAA-G-AATTTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGTGC------TG-A-GAATGTGTT--ATCGG-TCT--CAA-ATTTTTCTCA-AGTT-G-AGAATAAAATAAAA-GAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA----TTTTGTTATCTA--GAGAAT-TGTTTT-TATTGGTg
gi|5 : cgaaAACAAA---TTT--AA-AAGT---TGTTCATCAAAGT-A-ACATT-CAT-GTAATA--------GAGCTAACGCAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CATC-ACTTAAT-CT-AAAGGGAGA--TCACAT-CTGCTTCAGTTGAATA-CATGCAAGGAAAAAT-AGTTT--ATT-AG-CGT--CCCAATTCAC-TTCTTTCTAAGTTTGTGG-----TTAAGCAACTA--------TT-GCAAT-TAGCCT-CTA-A-TTCTCTATTC-AAAA-GTAAACTTTC--CTT-AAATA----ATCTAAG-------------CTATT---ATTTTGAAGCATTTTTTA---AA-ATTGATGCAGGGG-ATTATCA--AA--AGGTCAA-GGCC-------G--GT------GC-GACGATGGATGTTGTTG--TTGTTACAA-AACTTAATTTTAACC--G-AGGATATATCCAT-TAGGTGAAGG-GGACC--CGAGTGCAA-TATGA-------T---------A------cat
gi|6 : AA-GCTAA--CG-G--ATTCCA-CTCCGGTCTCTCGGA-ACACT-CGTGG-AGCA----GGCAAA-------GCCTG--AC--AT--AC-CTTC---TGTTTCTATGCGTAAACGTCTT--------G--TGCACAG--------A-CCATT----TTTATTTTTG-AG-A-AC-AAAATTT---C--TATACTTAAGTC--TGC---T-AT-G-A-CCAAACTTAA-G-A--ATTTTTTC-ATTT-CT--G--AGTA-CGAAA-TTGT-C------TG-A--AATGTTTTC-AT--G-TCTCA-AA---TTTTCTCA-AGTT-G---AGAAAAATAAAG--AA--TTCTGAG----A-AAAAACATT--GAGATTGAGAA-T-TTTTTTATGTCTTTAGAGAAT-TGTTTT-TAATGG-GTCATt
gi|7 : tcatggatggctcgtagtagataccaagtatggtttgcctcgcccgaagatcatgtacctttcaatagcgctcaacatgtcatTTTG-ATC-CACC-ACTCAAG-A--AAAGGGAGA--GCA-TT-CTGCTTCAGTAGAATATCAT-CAAGGAAAAATAAC----ACTT-TG----------ATTCACTT-CTGCCTAAGTTTGT-G-----AT-AGGAACTA------TTCC-GA-AT-TAG-CT-CTT-A-TTCTTTATTCTTAAG-GT-AACTTTCAAATTAAAATTGTAAATCTGACACACGCAGCAGATCCATTTAATATTTGAAACC-TCTTTT---AA-A-TGATGCAAGGG-ATTTTC---CA--AGGTCAA-GGCCAATTCAGA--GT-------CAG-CGATGTACA--ACCA---TGTTACAATA--TTAATC---ATA---------ATATT---------------GGACC--GGAGTGCAA-TATGACATACGGA---------A------GCCATAC-ATT--T---AGGTAAAGTT-------TCT-GT--CTTAA-GAAGGA-GTTTT---------------G----T----AACTTGAT---T--AT-----Gaggccct
gi|8 : ---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA----T----TG---AGACCT--A--CA-GACTTGAGAATT-TT---CTTTTAGCT-GAGAAAAAAAA-ACACCT----TGT-AC-T----GAGAACT-TTTTTTTGCAC-ACGACAGCGG-TAAT-CG-AAGC-TGA--TTTTGGAACT--CTTG--CT-GTAA-T-ATAA-G-GTA-TAAAAA-----AA-CATAGCCCACAT------TA---AA-CTAT---T-CTCTGAGA---ATTGGCAAAACA-----CTTTTATT-TTTTTTCC---TGGGGGGGGGGGGG---G--T-A----CAAACACAC-GATGC-TAATA-GAAA-TG--TG-TAACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGGAA-TA-ATATTCAGT--AAAACAA
gi|9 : TTG--TC-GAT--A-TCATCG---ATTTC-----------GTT--AC-----A---TGTACA-CA-G-T-AG-CCATCTTAGCTTGTTTT-G-AG-A-AC-AAAAAAA------TATACTTAAGTC-T-GC---T-AT-GAA-CCAAAC-------------------A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCT--CAA-ATTTTTCTCA-ACTT-G---AGAAACCTAT-G-AAA--TTCTGGG----A-AAAAACA-T--GAG-TTGAGAA---TTCTTTTTGTCT---GAGAAT-T-GTTT-TA-TGGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATGGATGGCATCGTGTAGATACAAGATGGTGCCTCGCCGAAATCTGTACCTTTCAAATAGCTCAACATCGTCATAAGCTAACGGATCCACTCGGTCTCGGAACAC
Unaligned ( gi|21 ): CAAGGTCGCCACGCCCAATTTTTCCTTCCGGCTGCCATCCCTAAATGTTACAGCTGTCTCCTATTAAAGCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 1111 111 1111 11111 222222222 11111 1111111 11 2222222222222222 1 1111111 1 1 1 11 11 3333 1 111 1 1 1 33333333 222222222222222222222222222222222222222222222222222222222222 22222 5555555555555 1 1 1 2222222 1 2222 111111 11 111 11 2222222 11 1 1 44444444444 11 22222 111 11 1111 11 1111111 11111 111111 33333333333333333333333333333333333333 111 111 4444444444444444444 111 1111 5555555555555555 11 1111111 11 444444444444444444444444 1111 111111 2222222 111 22222222222222222222222222222222222222222222222222222222222 1111 111 2222222222 22222222 11 222222222222 1 11111 11 11 1 111 1 111 3333333333 1 1 1 11 11 1111111 444444444444444444444444444 1111 111 11 333 111 11 111 11 1111 99999999999999999999999999999999999999999999 111111 1 3333 11 2222 22222 1111 1111111111 3333333333333333333333333333333333 4444444444444 333333 1 11 1111 111111 1111 2222222 1 11 2222 666666666666666666666666666 22222222 1111 2222222 22 111 111111 11111111 11 222 222 1111 1111 1 111 111 1 1
lowQualScore : 6 99 6 2 6 22222 77 2222 000 0 5 5 3333 77 77 22222 555555555 66 55555 6 8888888 99 8 5 8 11 1111111111111111 8 0 0 5555555 0 0 0 33 3 2 33 0000 0 111 0 0 0 33333333 3 11 444444444444444444444444444444444444444444444444444444444444 22222 2222222222222 2 3 0 5 1 6 0 0000000 0 1111 7 777777 0 11 444 0 8 11 2222222 33 0 0 00000000000 22 55555 777 3 3 33 6 8 8 8 0 1111 1 5 11 8 8 6 0 8 8 8888888 3 6 999999 2 666 6 66666 6 999999 6 6 6 6 6 6 6 5 5 0 33333333333333333333333333333333333333 6 1 111 6 6 2 6 888 99 6 3333333333333333333 3 22 222 9999 4444444444444444 0 99 3333333 11 6 999999999999999999999999 4444 6 888888 0000000 000 5 6 6 1 99999999999999999999999999999999999999999999999999999999999 0 7777 0 444 6666666666 99999999 0 8 66 8 777777777777 0 55555 1 33 00 0 11 0 555 0 777 3333333333 0 1 2 0 0 3 33 33 2 9999999 111111111111111111111111111 3333 000 1 6 11 333 8 8 5 8 222 11 444 99 8 1 6 11 5555 66666666666666666666666666666666666666666666 8 999999 0 3333 66 2 6 7777 77777 4444 9 6666666666 99 1 1 6 888 7777777777777777777777777777777777 3 77 1111111111111 8 222222 0 0 3 55 6666 6 000000 99 6 6 6 4444 7 1111111 2 77 1 77 88 0 0000 333333333333333333333333333 11111111 6 4444 7 6 6 6 6 9999999 00 111 6 6 9 6 7 111111 5 5 5 77 77 5 77777777 5 5 6 55 6 6 333 888 5 5 222 1 1111 77 1 2222 5 5 77 1 999 555 5 3 5 5
lowQualScore : . .. . . . ..... .. .... ... . . . .... .. .. ..... ......... .. ..... . ....... .. . . . .. ................ . . . ....... . . . .. . . .. .... . ... . . . ........ . .. ............................................................ ..... ............. . . . . . . . ....... . .... . ...... . .. ... . . .. ....... .. . . ........... .. ..... ... . . .. . . . . . .... . . .. . . . . . . ....... . . ...... . ... . ..... . ...... . . . . . . . . . . ...................................... . . ... . . . . ... .. . ................... . .. ... .... ................ . .. ....... .. . ........................ .... . ...... ....... ... . . . . ........................................................... . .... . ... .......... ........ . . .. . ............ . ..... . .. .. . .. . ... . ... .......... . . . . . . .. .. . ....... ........................... .... ... . . .. ... . . . . ... .. ... .. . . . .. .... ............................................ . ...... . .... .. . . .... ..... .... . .......... .. . . . ... .................................. . .. ............. . ...... . . . .. .... . ...... .. . . . .... . ....... . .. . .. .. . .... ........................... ........ . .... . . . . . ....... .. ... . . . . . ...... . . . .. .. . ........ . . . .. . . ... ... . . ... . .... .. . .... . . .. . ... ... . . . .
lowQualScore : 7 22 7 5 7 66666 99 1111 000 3 7 7 7777 11 99 33333 333333333 00 00000 7 5555555 22 0 6 0 00 6666666666666666 0 8 0 8888888 0 0 0 88 2 5 88 8888 0 000 0 0 0 22222222 2 22 222222222222222222222222222222222222222222222222222222222222 55555 5555555555555 5 2 0 5 0 5 0 5555555 0 2222 0 888888 8 00 000 8 0 00 0000000 00 0 0 00000000000 55 00000 555 2 2 88 5 0 0 0 8 8888 4 0 00 0 0 0 8 2 0 8888888 2 7 333333 5 555 7 77777 7 222222 7 7 7 7 7 7 7 7 7 7 77777777777777777777777777777777777777 7 7 777 7 7 5 7 333 22 7 8888888888888888888 2 33 777 0000 0000000000000000 8 00 2222222 00 7 999999999999999999999999 2222 7 555555 2222222 888 7 7 7 7 66666666666666666666666666666666666666666666666666666666666 8 0000 8 000 0000000000 00000000 8 0 88 0 888888888888 0 88888 0 88 22 2 00 0 000 0 555 5555555555 0 2 5 0 0 2 88 88 5 5555555 000000000000000000000000000 5555 555 4 4 00 000 0 0 0 0 888 00 000 44 0 4 0 00 2222 22222222222222222222222222222222222222222222 0 000000 0 8888 00 5 5 8888 88888 2222 3 0000000000 22 0 0 7 000 5555555555555555555555555555555555 2 77 3333333333333 0 222222 8 8 3 88 7777 7 555555 22 7 7 7 2222 3 7777777 3 99 4 99 77 6 6666 777777777777777777777777777 55555555 7 2222 3 7 7 7 7 5555555 55 777 7 7 8 7 3 777777 7 7 7 99 99 7 99999999 7 7 7 88 7 7 222 999 7 7 999 4 3333 99 4 1111 7 7 99 4 999 777 7 7 7 7
consensus : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAA-CATAGNCAACAT------AT---GA-C-AT---G-CCCC-AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GACAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGAA-ACA--CCGCCC--------CCCTGTCGGAATCG-GTAAAC--NCG---NT-TCGA---C-TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-G-T-AG-CCATT----CTTGTTTTTG-AG-A-AC-AAAAAAA---C--TATACTTAAGTC-TTGC---T-AT-GAA-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
Reference ( family-3473 ) : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAA-CATAGNCAACAT------AT---GA-C-AT---G-CCCC-AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GACAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGAA-ACA--CCGCCC--------CCCTGTCGGAATCG-GTAAAC--NCG---NT-TCGA---C-TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-G-T-AG-CCATT----CTTGTTTTTG-AG-A-AC-AAAAAAA---C--TATACTTAAGTC-TTGC---T-AT-GAA-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
gi|1 : ATGACAATAGAACAATAAAAATTCACTCAGCACAAAAATTTTGAAATTC--TCAGAAATCATAAAAAAACATAATTCTCAGA-T-GCA--GAACTTACAAATATTAACAACA---AT----TTGAGACCCATTTAAACA-GACTTGAGAATAATTAAACTT--AGCTTGAGAAAAAAAACAC--CCTAACCGATAC-CACTCGAGAACAATTTTCTTGCACCACGACACT-G-T-AT-CT-AAGC-TGAAATTTTG-AACTACCCT---CTCGTAAAT-TTAACG-GTAATAAAAAAA--GATTCA---GCAACAT------AT---AAAC-AT---GGCCCC-AAAAGCGTCGGC----CAAAATCT-----CTATTTTTTCC---GGGGGGCGGCGGAGCGCGATT-GTAACACACCGCACCGATGC-TAATAAGAAA-TGGCCG-T-ACTTTGCAATTT----TTTTCCCCAAAAAACATTTGAGGCACTACATATTCAGACAAAATCAACAAAAGGTTTTAAACAGGCTACTGTTCATCAT--TAC-ACATAACATAGTA-CAATGACTAAG--CTA-CACAAATACATT---TGA--CATAATTTTACTAATTCGTTTGCATC-CACC-ACTCAAT-CTCAACGGGAGA--TCA-ATTCTGCTTCAGTTGAA--------------------GTTTAAATTTAG-CAGGCCCCAATTCACCTTCTTTCTAAGTTTGT-ACGCTTTT-AGCCAATA------TTTTTGT-ATATAG-CTTCTA-AATTCTCTATTCTAAAAAGT-AACTTTCAA------------------A--------------C-ATT---TATTTGAAGCA-CTTTTATTGAACA-TGA-GCAGCGACATTATTCAAAA--AGGTCAAAGGCC------AGT-GTCATTACGTAGACGATAGGCATTGTTG--TTGTTACA---------------------------TATCCAATTAGG-GAA-GCGGACCACTGAGTGCAACTATGA-------TCAGGGCGAAA------GC----CCATT--TTAGAGGTAAAGTTTACAAA-TCTAACTCCTCAACGCAAGATATTCTCCTGACTTGAATATTGT---TATTAGACTTAAAGTAT--ATCATCTGAGGCA--CT---TTAGCAAGATTTCCC---CCCCCCCCTTTAA------GGCT--------TTCCTTTTAAATAGTTTAATTCAATCA-------CTTGGTAAGG-ATG-TGT-TGCC--ACTAAAGCCTAAAAGAAAGAACAA--ATAACAGGCATAAATTCTCCTAAA--ACTCACTATCCACTTATATTGTGTTGCTAACA-AT--CCA--C-------ATTAAACGAGCGAA-------AAAAAGCA----AATCG-AAGGTAGC-CACCCGC--CGGC-CT-GACA-TTTCCCCTCCCGGCCTGCAGCTTTCTCGAAGATAT-TTTCA-AACCGTCAACGAATCGATTGCTCATCAAGAAGTTGTAT-G-GACTC-GGG-TA-AGC--TAT---AAAATC-TC--AAAAGCA-CAGAA--AGCAGTGACAGTATGGG-TG-ACCAAGGCCAT-AT--TTC----CTCCTTCAAC----A-AATTCCCCCCTGGATTTGCATAACA-ACGGACATGAA-ACA--CCACCCCACCTACTCCCTGTCGGAATCA-GGAAAC--ACG---GTATCGA---C--CAATAAAGGCCGA--GG-GCAAT-CTGTTGA-CATCCC--GAACACACCTCGCGG-GACA----AGTAAA-------CCTTG--CCAGATTCATTCATCGATTATCTC---------------TAC-----AA--TGTACAACATG-T-AG-CCACT----CTTGTTTATG-AG-ACAC-AAAAAA-------TATACTTAAGTCGGTGCATAT-AT-GAATCCAAACTTAA-GCA--TTTATTTC-A-TTGCT--GAAAGTACCGAAATTTGTAC------TG-A-GAATCTTTTTCAT-GG-TCTCA-AC-TTTTTTCTCATACTT-GAGACAAAAAATATGA-ACATTTTCTGAGAAAAA-AAAAACA-TTCGAGTTTGAGAA-T-CTTTTATTGTCT---GAGAAT-T-GTTT-TA-TGGT
gi|10 : aACCATAAAACAATAAAT-TCT--TCAG-ACAA---TTTTGT--T-C--TCAGAA----TAAAAAA---TACTTCTCAGC-T-G-AG-GAACTT-CA--TAT------AA---AT----T---GAGACAT--AAACA-GACTTGAGAATT-TTC--CTT--AGCT-GAG---AAAAA-AC--CT----CG-TACTT----GAAGACT-TTTTTTT
gi|11 : tgaGCCAC--CG---CCCGA-A-TTTCCC-TACCAG-CAGTAT--TCCTGGAA---AT-GTTGA-GGCTGTC-TCCAATT-A--GC---------AGC----T-G-GG-TC-GCT-CC-GGT--TGCCA-AAAACC-TC--
gi|12 : acccacggggaatgcgatgacatttctgaatgcgctcactagcaacgtgT--CTC----CTTCTC---C----A-AAT--GCCCCTGGA-TGGAATCGTGTA--AATACAAA-ATA----GTCC--------CCC-GCCGAAATCT-GTA
gi|13 : acaatgccatgttcctctttgTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-CTCAACTTG-A-GAAccgttcaaaaggctccacatcgtca
gi|13 : TTTT--TTCATTCTGAG----TACGAAA---TTTGTCTCAAC-TTG-A--GAAA---AA--TAT----GAAA---TT----CGGAGAGA-A---AAACATGAGTTGAGAATT-TT---TTT--aaatatgaaattcggagagaaaaacatgagttgagaattttttttttgtctgaaaattgttttatggtggt
gi|13 : AA-ATTTGTCTCA-ACTT-G---AGAAAAATAT-G-AAA--TTCGGAG----AGAAAAACA-T--GAG-TTGAGAATT-TTTTTTTTGTCT---GAAAAT-T-GTTT-TA-TGGTGtttgtctgaaaattgttttatggtggt
gi|14 : ttttttcattctgagtacgA-TATGA-------A---------A------GC----C-ATT--T---AGGTAAAGTTTC---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------G-------------TGAA--------------------------TTAT----ATTACCC---CCCCCCCCC--AA------GGCT--------TTCCTTTAAAAT-GTTTA--TCAAT-A-------CTgt
gi|16 : tatgAA-GT-AACTTTCAACTT--------------------------------------TATTTGAAGCA-TTTTCA---AA-A-TGATTCAGGAG-ATTATC---AA--AGGTCAA-GGCC-------G--GT------GCAGCCGATGGATGTTGTTG--TTGTTACAA-A--TTA
gi|17 : TTAAATT-AA-CGG--CCCAATTCACT--CTTTCTAAGTTTGT-G-----TT-AGCAACTACATGTATTTT-GT-AT-TAG-CT-CCA-A-TTCTCTATTCTAAAA-GT-AACTTTCAAC
gi|18 : CATACTACCATAAAA-TAC--TCAG-AAAAAA-TTTCAT--T-C--TTGGAA----TAAAAA----TAATTTTCAGT-T-G-C--GAAATT-CA--TCT----AGAATTCATGCCATGAAGAGA
gi|19 : T-TCGA-----TCAATAAA-GGCGA--GG-GG-AT-CTG-TCC-GGTTCC--GAA-ACACC-CACGG-GGCAAGCTAGTAGACCTAAGTCCTTG--CC-GAT--A-TCGTCG---ATTTC-----------GTTt
gi|2 : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAGTTCTCAGCTT-G-AGTGAACTT-CA--TAT----AAAA---AT----TGAAGAGACAT--AAACA-GATCTGAGAATT-TT---CTT--A-CT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACA-C-G-T-ATGCTAAAGCTTGA--TTTTGGAACT--CTTCTGCT-GTAA-T-ATAA-G-GCA-TAAAAAAAAGGAA-CATAAGCAACAT------AT---GA-T-A--------AC-AG-------GCC----CA---------------TTTTTCCGGGGGGGGGGGGGGGGG---GGTTAA----ACAACATAC-GATGCATTATAGAAAA-TG--TT-T-ACTTTG-AATGTCCCCCCCCCCCCCCAACGCATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAG--T-C-ACAT-ACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTTGTTTG-ATCACACC-ACTTAAT-CT-AAGGCGAGGACTCA-AT-CTGCTTCAGTTGAATACCAT-CAGAGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTCT-TTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TTG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AAATTTCAACTT-AAAT-----ATCTGAAT------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGATGTTGTTGAAACATTACAA-A--TTAAT----ATACGG-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------T---------A------GC----C-ATT--T---AGGTAAAGTTTA---ACTCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CA---TTAT----ATTACCC---CCCCCCCTT--AA------GGCT--------TTCCTTTAAAAT-GTTTACTTCAAT-ACTAGCGCCTTACTTGGGCATG-T-T-TGCA--AATAAAGTCTAAAGGAAAGAA-AA--CTAACAG-CA---ATTCTCCTAAATTCCT-----TCCA-TTGTTTTGTGT-GC-AACATCT--CAA--CGGGAATTATTAAACG--CGAT-------AA---GCA----A-TCGCA-GGTAGC-CCACCGCCGCGGCTCCCGA-A-TTT-CC-TCCCGGTCTGCAG--TTCTCAGA---AT-ATTCAGAACCGTCACCT-ATCAA--GC---------AGTTGTGT-ATGA-TCAGGTCTACGATTATAC---AAGATC-TCCTAA--GCA-CAGCACTAGT--TGACAGTATGGGTTGCGA-AAGGCCATAATAATTC----CT-CTT---C----ATAAT--CC-----GA-T----CCG-----------------A--CTACCC--------ACCTGTC-GAATCGCGT-TAT--TCG---CT-TCGA---TGTCAATAAA-GCCAG--GG-G--AT-CTG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGT--A-------CCTTG--CCGGAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-GTT-AG--CACT----CTTG-TTTTG-AGCA-ACAAAAAAAA---C--TATACTT-AGTC-TTGC---T--T-GAA-CCAAAC-TAA-G-A--TTTTCTTCTA-TT-CTTGG--AGTA-GAGAATTTGT-C------TG-AGGAATCTTTT--AT-GGACCTCACAAGATTTTTCTCA-ACTTAG-GAAGAAAAATATTGAAAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-TGTTTTTTTTG-CT---GAGAAT-TAGTAT-TATCAGTGTCAT
gi|20 : -GACAAGGCCATA----TTC----CTC-TT---C----A-AAT--CCCCTTGGA-TTGCATTAC--A--GACATGAACACA------CC--------CCCTGTCGGAATCG-GTt
gi|22 : tCCCAAAACATTTGAAG-A-TG-ATATTCAGA--ACATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA
gi|23 : tttATGACCATAAAACAATAAAA-TTC---GAG-AC--AA-TTTTG---TTC--TCAGAA----TA
gi|3 : tATGACCATAAAACAATAAAA-TTC--TTAG-A-AAAA-TTTTGT--T-C--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACT--CA--TAT----AAAA---------TGGACCAAT-C--AAACA-GACT-GAGAAT-------CTT--AGCT-GA--AAAACAG-CC--CT----CGT--C-T-----AGAACT-TTTTTC--CAC-ACGCCAAC-GGT-AT-CT-AAGC-TGA--TTT-GGAACT--CT----CT-GTAA-TGATAA-GAGTA-TAAAAAAA------CATAGCCAACATTAAACAATCTCGA-A-ATATGG-CCCA-AGA---GTCGGC----CA-----T-----TT-TATTTTC-----GGGGGGGGGGGGG---TGT-------ACAA-GC-----CGTATCATAGAAAAGTG--TTGT-ACTTGA-AATTT----TTT---CCCCAAAACATGAAAGG-A--A-ATAT-CAGA--AAGTCAACAAA---TTTTAAA-AGGT--CTGTTCATCAT--T-CCACATAACAT-GTA-TA--------G--CTA--ACAA-----TTATTTGATACATATT-CTA--ATGC--TTTG-ATC-CACCCAC-CAATTCT-AAGG--AGA--TCA-AG-TCGCTT-AGT-GAATACCAT-CAAGGAAG--TA---TTAAATT-AGTCGG--CC-AATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAC-CT-CTCCA-TTCTCTAT-CTAAAA-GT-AACTT-CAACTT-A--------------------------------------TTTCGAACA-TTTA-A---AA-A-TGAT-CAGGGA-ATTATC---AATAAGGTCAA-GGCC------GGTGGT-------CAGACGATGG-TGTTGTTG--TTGTTATAA----TTAAT----ATA--GGA-GATATA-CCA--TAGGT-AA-G-GAGCC--TGA-TGCAA-TATGA-------A---------ATAGAAAAC----C-ATT--T---AGGTAAA-TTTA---A-TCTAAT--CT--A-AAAAGA-AT-CT---------------GTACAT----GAAATGGA---TTAGT-----GG---A--TAGAATTAT----ATTGTCCTTGCCCCCCCCT--TA------AGCT--------TTCCTTTAAAAT-GTTTA-TCAAAT-A-----------CTTAGG-ATGAT-T-TGAATGAAT-AAGCCTAAAAAAAAGAA-AAAGTTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATCTTGTGT-GC-AACATCT--CCAACCGGGAA--AAAAAACGG-CG-A-------AAAG-GCA----ATTCG-A-GGTA-T-CCACC-C--CG---CCCGA-A-TTTCCC-TCCCGGCTCGCAG--TTCTCGAG---ATAATTCA-ACCTTTCACCTGATCGA--GCTATCA---AGGTTGTATGG-GA-TC-GGTATA--AT---------AAATCATC--AA--GCACCAG----AGCA-TGACA-TATGGG-T--GACAAAGCCATA-----TC----CT-CTT---C----A-AAT--CCCCCTGGA-TTG-ATCACG-G--GACATGGA-ACACCCCCCCC--------CCCTGTCGG-ATCG-GTA-----GCG----T-TCGA---T-CAAATAAATGGCGATTGGCG--AT--CG-TGC--GTCCC--GAA-ACCGC-CACGG-GGCC----AGT-AA-------CC--G--CC-AAT--A-TCAACG-----TTC-----------G--TTAC-----AGA-TGTAC-ACA-G-TAAG-CCATT----C-TG---TTG-AG-A-A--AACAAAA---CCATATACTTAAGTC-CTGC---TAAT-G-A-CCAAACTAAATG-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TGAA-GAAC-TTTT--AT-GG-TCTT-CAA-A-TTTTCTCA-ACTT-T-GAAGAAAA--GTAG-AAA--TTC-GAT----G-AAAAACA-T--GAG-TTGAGA-----TTTTTTTGTCT---GAGAATATGGTTTGTAT
gi|4 : ATGG-------A---------A------GC----C-ATTAATG--AGGTAAAGTTAT---A-TCTAA------AG-GCAGGA-GTCCT------------------------------------T--AT-----GA---AATCT---TT-T----AT-ACCC---CCCCCCCCC--CACCCCCCGGTTAAATCAAATGCC---AAACT-GTTTA-TTTAAT-A-------CTTG--TAGG-ATA-C-TATGAA--AATG--------------GAA-AA--TTACCAG-CA---ATTCTCCCGAAAGCCC-----TCCA-TCACTTTAT-T-GC-AACATCCACCCA--CGGGGG--A--AAGCGA-TGAACATCTCTAAAT-GCGCATCA-CCA-A---CAACGTCGCCAC--CG---CCCGA-AATTTGCC-TACCAGCA-GCAT--TTCTTGAA---AT-GTTGA-GGCTGTCTCCCAATT-A--AC---------AGC----T-G-GG-TC--CT-CC-GGT--TGCGCAAAAACC-TC---A--GCA-TAGT---AGTAAGGA-AACATGGG--A-GACAGAGCCATGTT--CTCTTGTCTCCCT---CTCCAG-AAT--GGTCATGGA-TGGCATCGTGTA--GATACAAG-ATG--GTGCCT--------C---GCCGAAATCT-GTAATCTTTCAAATAT-TCGACATC-TC-AT-AA-GCTAAC-GG-T--AT-CCA-CTC-GGTCTC--GGA-ACACC-CGTGGAAGCA----GGCAAA-------GCCTGGACC-GAT--AC-CTTCT--TGTTTC---------------TACGTAAAAGTCTGTGCA--G-G-C-AGCCCATT----TTTATTTTTGCAG-A-AC-----AAATTTT--TATACTTAAGTC--TGC---T-ATGGGA-CCAAACTTAA-G-AATTTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGTGC------TG-A-GAATGTGTT--ATCGG-TCT--CAA-ATTTTTCTCA-AGTT-G-AGAATAAAATAAAA-GAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA----TTTTGTTATCTA--GAGAAT-TGTTTT-TATTGGTg
gi|5 : cgaaAACAAA---TTT--AA-AAGT---TGTTCATCAAAGT-A-ACATT-CAT-GTAATA--------GAGCTAACGCAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CATC-ACTTAAT-CT-AAAGGGAGA--TCACAT-CTGCTTCAGTTGAATA-CATGCAAGGAAAAAT-AGTTT--ATT-AG-CGT--CCCAATTCAC-TTCTTTCTAAGTTTGTGG-----TTAAGCAACTA--------TT-GCAAT-TAGCCT-CTA-A-TTCTCTATTC-AAAA-GTAAACTTTC--CTT-AAATA----ATCTAAG-------------CTATT---ATTTTGAAGCATTTTTTA---AA-ATTGATGCAGGGG-ATTATCA--AA--AGGTCAA-GGCC-------G--GT------GC-GACGATGGATGTTGTTG--TTGTTACAA-AACTTAATTTTAACC--G-AGGATATATCCAT-TAGGTGAAGG-GGACC--CGAGTGCAA-TATGA-------T---------A------cat
gi|6 : AA-GCTAA--CG-G--ATTCCA-CTCCGGTCTCTCGGA-ACACT-CGTGG-AGCA----GGCAAA-------GCCTG--AC--AT--AC-CTTC---TGTTTCTATGCGTAAACGTCTT--------G--TGCACAG--------A-CCATT----TTTATTTTTG-AG-A-AC-AAAATTT---C--TATACTTAAGTC--TGC---T-AT-G-A-CCAAACTTAA-G-A--ATTTTTTC-ATTT-CT--G--AGTA-CGAAA-TTGT-C------TG-A--AATGTTTTC-AT--G-TCTCA-AA---TTTTCTCA-AGTT-G---AGAAAAATAAAG--AA--TTCTGAG----A-AAAAACATT--GAGATTGAGAA-T-TTTTTTATGTCTTTAGAGAAT-TGTTTT-TAATGG-GTCATt
gi|7 : tcatggatggctcgtagtagataccaagtatggtttgcctcgcccgaagatcatgtacctttcaatagcgctcaacatgtcatTTTG-ATC-CACC-ACTCAAG-A--AAAGGGAGA--GCA-TT-CTGCTTCAGTAGAATATCAT-CAAGGAAAAATAAC----ACTT-TG----------ATTCACTT-CTGCCTAAGTTTGT-G-----AT-AGGAACTA------TTCC-GA-AT-TAG-CT-CTT-A-TTCTTTATTCTTAAG-GT-AACTTTCAAATTAAAATTGTAAATCTGACACACGCAGCAGATCCATTTAATATTTGAAACC-TCTTTT---AA-A-TGATGCAAGGG-ATTTTC---CA--AGGTCAA-GGCCAATTCAGA--GT-------CAG-CGATGTACA--ACCA---TGTTACAATA--TTAATC---ATA---------ATATT---------------GGACC--GGAGTGCAA-TATGACATACGGA---------A------GCCATAC-ATT--T---AGGTAAAGTT-------TCT-GT--CTTAA-GAAGGA-GTTTT---------------G----T----AACTTGAT---T--AT-----Gaggccct
gi|8 : ---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA----T----TG---AGACCT--A--CA-GACTTGAGAATT-TT---CTTTTAGCT-GAGAAAAAAAA-ACACCT----TGT-AC-T----GAGAACT-TTTTTTTGCAC-ACGACAGCGG-TAAT-CG-AAGC-TGA--TTTTGGAACT--CTTG--CT-GTAA-T-ATAA-G-GTA-TAAAAA-----AA-CATAGCCCACAT------TA---AA-CTAT---T-CTCTGAGA---ATTGGCAAAACA-----CTTTTATT-TTTTTTCC---TGGGGGGGGGGGGG---G--T-A----CAAACACAC-GATGC-TAATA-GAAA-TG--TG-TAACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGGAA-TA-ATATTCAGT--AAAACAA
gi|9 : TTG--TC-GAT--A-TCATCG---ATTTC-----------GTT--AC-----A---TGTACA-CA-G-T-AG-CCATCTTAGCTTGTTTT-G-AG-A-AC-AAAAAAA------TATACTTAAGTC-T-GC---T-AT-GAA-CCAAAC-------------------A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCT--CAA-ATTTTTCTCA-ACTT-G---AGAAACCTAT-G-AAA--TTCTGGG----A-AAAAACA-T--GAG-TTGAGAA---TTCTTTTTGTCT---GAGAAT-T-GTTT-TA-TGGT
blockSeqs : . . . C . TTT AT . . T T AGT T . G TTCATGCCA GG CAT T TTTC TT . A . AC CGTACTT . . GCGGTA G A T . T G . TCTG . TG . A . AAAGGAA T AG TAAACAATCTCGAAATATGGCCCAAGAGTCGGCCATTT CGGGG GGTTAA C A . A T G G TTGT . CCCC C AATA . . . . AAGTA AA . A GAG AC . ATT T T . T . A C TCT G C AC C . T C G AATAAGT A . TCGG C TCT G . A CATGTA . A . C . C . . A AAAATTGTAAATCTGACACACGCAGCAGATCCATTTAA T C . . T T . A TA . AATTCAGAGT C AT AAA AAC TTTAACCGAGGAT T TGAAGG . . CATACGGAA CATA . AATG TAAC T T . . T GTACATGAAATGGATTAGTGGATAGAA . TTG CACCCCCC AAATCAAA . CT . CTAGCGCCTTAC C ATT C TG AA GG . AGT . . TTCCT . T G . . T AC AC G AATTATT ATGAACATCTCTAAATGCGCATCA CAG ACG G A CG GCT . A C . TCT . . AA G G A CA AA AGTTGTGTATGATCAGGTCTACGATTATAC A CTAA C CACT AA C G TTGC AATAA TTGT T CTCCAG . C C . GGA CGGGACATGGAACACCCCCCCC T GC AATCTTTCAAATA . CATCT T TT GG T CTCCG TC . . A AGCT A CCTAAGT T GA G . CT GT TATGCGTAAACGTCTTG ACAGTT C TTAG T C C . A ATTTT T . A G A . T GAAT T T . TG . . CTCAACT A G C C C A CAC GAT . A GA A TGAA . G . G T . A TT TTA A A G T
blockSeqs : . . . A . TTT . . . . . AG T . A AT GA CAT . TTT . . A . . CGTTACT . . ACGGT . . . . T G . TG . T . . . AA T GC TAAACTATTCTCTGAGAATTGGCAAAACACTTTTATT CT TGT C A . A C G . TGTA . . T ATA . . . . TTCC A . . G C . . T T . C . . . CT G G . . . T C . AATAGT A . CGG C TTT . . . . . . . . . . . . . AAATATCTGAATCTATT . T . . . G . . . . GGTGGT A AT T TA ATACGGAGAT . TGAAG . . AATAGAAA . . T TCA T T . . T GTTGACTTGAATATGAACA . . AA . . T . CTTG . CTA A . A AA . C . . AGCCC . C G . . T . . G AAAAA GCGAAAAGGCAAT AG GC A G . . . . C . CTC . . G . A A TG GA TATCAAGGTTGTATGGGATCGGTATAAT . AA . T A C A T GTT . C CAT . C T . TGC TGTAGATACAAGATGGTGCCT T T TATTCGC . TGT . C CG . TCCG . . . . . A . T . . . T TT TACGTAAAAGTC ACAGTA . . T . . . . ACCA C . . . G . T TGA . . . . . . GC . . G . . . TC AT . . GA A AGA . T . . . . . TG A . G . T
blockSeqs : . . . C . TT . . . . . A T . A TT GA CCT . TTT . . . . . TGTACT . . CGT . . . . . G . . . T . . . AA T GC ATGATAACAGGCCCA . GTA . . . . A . . TTT . . . ATG . . . . GTC T . . G . . . T . . . . . . CT A G . . . A T . AATAAC A . CGG C TT . . . . . . . . . . . . . AAATAATCTAAGCTATT . T . . . G . . . . GGGTG A AT T A ATAGGAGAT . TAAG . . AA . . T TAA T T . . C TATGAAATCT . . AA . . T . C . TT A . G . . T . . CCT . T . . . T . . G GGA CGATAAGCAA A T A A . . . . G . CA . . A . C T CA A AGCTGGGTCGCTCCGGTTGCCA . A . . . . . A A . C CA . C C . GGC TGTAAATACAAAATAGTCC T G AGCG . TC . . G . CGCG . . . . . A . C . . . T G GTTTTACAG CAGT . . T . . . . AC T . . . A . T GA . . . . . . C . . G . . . CA AT . . AG A AAG . T . . . . . T . . G . T
blockSeqs : . . . C . TT . . . . . C T . A AT GG TC . TTT . . . . . CGTCT . AA . . . . . . . A A . . . . . . . TA . . CGT . TT . . . . . . . . . . . . . A . T . . . G . . . . GGTG A AC T A CATA . . . . TA . . T ATA T . . . T GTGAA . . TA . . . . G . . . . . . . CA . . G . G . T A AGCTGGGTCCTCCGGTTGCGCA . A . . CA . T A . TG CAGACATGAACACACC . G . T . . T . CTCG . . . . . . . C . . . C G GTTACAGA GGC . . . . . . . TC . . . . . . . GA . . . . . . C . . G . . . C AT . . . A GA . T . . . . . . . . G . A
blockSeqs : . . . . . TT . . . . . A . . A T G A . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . GGTG . T . . . AA . . T . . . . . . . . CA . . . . . ACTACCC . T . . G . TGC . . . . . . . T . . . C T GTTACA G . . . . . . . A . . . . . . . . . . . . . . C . . . . . . C A . . . C AG . T . . . . . . . . . . .
blockSeqs : TT . . . . . A . . . . . . . TA . . . . T G . . . . . . C . . . . . . . GA . . . . . . . . . . . . .
blockSeqCons : ** TT*** **** *** A*** T* ** A**** CAT** TTT**** CGTACT********** ATA*** ** *** ** CT** AATAGC* CGG*** ***** AAATAATCTAACCATT********************** *** *** GGTG*************** A*** ATAGAGAT******** ** TAAG*** ** NA********************** T***** TNA**** T** **** AA******** T* *** ** *** GA** AGCTGGGTCGCTACGGTCGCGCA********************* A**** CA******** ** CGAGACACGAAACGCCC***************** G*** CNCG** ** T* G*** GTTACAGA******************* AC***** T* *** GA**** ** C******* ** *** AGA* ** **** ** T**
originalCons : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGT--TTC--TCAGAA----TAAAAAA---TAATTCTCAGC-T-G-A--GAACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CGTTAC-T----GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAA-CATAGNCAACAT------AT---GA-C-AT---G-CCCC-AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC------GG--GT------GCAGACGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTGAA-G-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGC--CGGC-CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCT-------AAGTTGTAT-G-GA-TC-GGT-TA-GGT--TGC---AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GACAAGGCCATAAT--TTC----CTCCTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGAA-ACA--CCGCCC--------CCCTGTCGGAATCG-GTAAAC--NCG---NT-TCGA---C-TCAATAAA-GCCGA--GG-G--AT-CCG-CGC-GGTCCC--GAA-ACACC-CGCGG-GGCA----AGTAAA-------CCTTG--CC-GAT--ACTCATCG--TATTTC-----------GTTTTAC-----AG--TGTACAACA-G-T-AG-CCATT----CTTGTTTTTG-AG-A-AC-AAAAAAA---C--TATACTTAAGTC-TTGC---T-AT-GAA-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G-GAAGAAAAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
finalCons : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTGTT---C--TCAGAA----TAAAAAA---TAATTCTCAGC-T-GA---GAACTT-CA--TATA----AAA---AT----TGGAGAGACAT--AAACA-GACTTGAGAATTTT----CTT--AGCT-GAGAAAAAAAA-AC--CTCGTACT----------GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAA-CATAGNCAACAT------AT---GA-C-AT---G-CCCC-AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGGATA---ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAATCT--AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAATAGC-TTAAATT-AGCGG---CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTTAAATAATCTAACCATT----------------------TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCCGGTG---------------CAGACGATGGACGTTGTTG--TTGTTACAAA---TTAATATAGAGAT--------ATATCCA--TAGGTAAG---GGACC--TGAGTGCAA-TATGANA----------------------GC----C-ATTT-----AGGTAAAGTTTNA----TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCTAA--------GGCT--------TTCCTTTAAAAT-GTTTAT-TCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGC--CG---CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GCAGCTGGGTCGCTACGGTCGCGCA---------------------AAAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GACAAGGCCATA----TTC----CTCCTTCA--------AAT--CCCCCTGGA-TTGCATCGCGAGACACGAAACGCCC-----------------CCCTGTCGGAATCG-GTAAAC--NCG---NT-TCGA---C-TCAATAAA-GCCGA--GGG---AT-CCGCNCG--GTCCC--GAA-ACACC-CGCGG-GGCA----AGTAAA-------CCTTG--CC-GAT--AT-CATCG---ATTTCGTTACAGA-------------------TGTACAACA-G-T-AG-CCATT----CTTGTTTTTG-AG-A-AC-AAAAAAAC-----TATACTTAAGTCT-TGC---T-AT-GAA-CCAAACTTAAGA----TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGTC-------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-ACTT-G---AGAAAAATATAGA-AA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAAT--TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATGGATGGCATCGTGTAGATACAAGATGGTGCCTCGCCGAAATCTGTACCTTTCAAATAGCTCAACATCGTCATAAGCTAACGGATCCACTCGGTCTCGGAACAC
Unaligned ( gi|21 ): CAAGGTCGCCACGCCCAATTTTTCCTTCCGGCTGCCATCCCTAAATGTTACAGCTGTCTCCTATTAAAGCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 111 1111 222222222222 11 2222222 11 11 2222222222 1 1111111 1 1 1 11 11 3333 1 111 1 1 1 33333333 222222222222222222222222222222222222222222222222222222222222 22222 5555555555555 1 1 1 2222222 1 2222 111111 11 111 11 2222222 11 1 1 44444444444 11 22222 111 11 1111 11 1111111 11111 111111 44444444444444444444444444444444444444 111 111 2222222222222222222 111 1111 5555555555555555 222222222 11 444444444444444444444444 1111 111111 2222222 111 22222222222222222222222222222222222222222222222222222222222 1111 111 2222222222 22222222 11 222222222222 1 11111 11 11 1 111 1 111 3333333333 1 1 1 11 11 1111111 444444444444444444444444444 1111 22222 111 111 111 1 1 222222222222222222222222222 44444444444444444 111111 1 222222222 2222 111111 333333333333333333333333333333333 5555555555555555555555555555555555 444444444444444444444444444 1111111111 11 1111 1111 2222222 1 1 11111 111111 44444444444 11 1111 1111 2222222222 111 111 11 111111 11111111 11 111 111 111 1111 1111 1 111 111 1 1
lowQualScore : 6 99 6 2 6 111 6 4444 0 111 6 888 99 6 99 4444 999999999999 5 11 0 0 7777777 11 8 5 8 11 5555555555 0 8 8 8 0 0 5555555 0 0 0 33 3 2 33 0000 0 111 0 0 0 33333333 3 11 444444444444444444444444444444444444444444444444444444444444 22222 2222222222222 2 3 0 5 1 6 0 0000000 0 1111 7 777777 0 11 444 0 8 11 2222222 33 0 0 00000000000 22 55555 777 3 3 33 6 8 8 8 0 1111 1 5 11 8 8 6 0 8 8 3333333 3 6 999999 2 666 6 66666 6 999999 6 6 6 6 6 6 6 5 5 0 00000000000000000000000000000000000000 6 1 111 6 6 2 6 888 99 6 6 6666666666666666666 22 222 9999 4444444444444444 0 000000000 8 11 6 999999999999999999999999 4444 6 888888 0000000 000 5 6 6 1 99999999999999999999999999999999999999999999999999999999999 0 7777 0 444 6666666666 99999999 0 8 66 8 777777777777 0 55555 1 33 00 0 11 0 555 0 777 3333333333 0 1 2 0 0 3 33 33 2 9999999 111111111111111111111111111 8 8 5555 6 33333 888 5 6 1 222 555 111 6 2 6 0 1 0 6 888888888888888888888888888 0 00000000000000000 8 999999 0 888888888 2 6 7777 666666 999999999999999999999999999999999 99 1 1 5 8 4 5555555555555555555555555555555555 88 888888888888888888888888888 9999999999 888 5 99 5 22 0000 77 5 6 6 4444 7 1111111 2 77 1 77 1 0 44444 5 555555 00000000000 66 6 8888 4444 7 6 6 6 6 7777777777 999 111 6 66 6 7 111111 5 5 5 77 77 5 77777777 5 5 6 55 6 6 999 888 5 5 000 000 77 1111 77 1 2222 5 5 77 1 999 555 5 3 5 5
lowQualScore : . .. . . . ... . .... . ... . ... .. . .. .... ............ . .. . . ....... .. . . . .. .......... . . . . . . ....... . . . .. . . .. .... . ... . . . ........ . .. ............................................................ ..... ............. . . . . . . . ....... . .... . ...... . .. ... . . .. ....... .. . . ........... .. ..... ... . . .. . . . . . .... . . .. . . . . . . ....... . . ...... . ... . ..... . ...... . . . . . . . . . . ...................................... . . ... . . . . ... .. . . ................... .. ... .... ................ . ......... . .. . ........................ .... . ...... ....... ... . . . . ........................................................... . .... . ... .......... ........ . . .. . ............ . ..... . .. .. . .. . ... . ... .......... . . . . . . .. .. . ....... ........................... . . .... . ..... ... . . . ... ... ... . . . . . . . ........................... . ................. . ...... . ......... . . .... ...... ................................. .. . . . . . .................................. .. ........................... .......... ... . .. . .. .... .. . . . .... . ....... . .. . .. . . ..... . ...... ........... .. . .... .... . . . . . .......... ... ... . .. . . ...... . . . .. .. . ........ . . . .. . . ... ... . . ... ... .. .... .. . .... . . .. . ... ... . . . .
lowQualScore : 7 22 7 5 7 777 7 2222 8 777 7 333 22 7 22 2222 555555555555 6 00 8 8 6666666 00 0 6 0 00 2222222222 8 0 0 0 8 0 8888888 0 0 0 88 2 5 88 8888 0 000 0 0 0 22222222 2 22 222222222222222222222222222222222222222222222222222222222222 55555 5555555555555 5 2 0 5 0 5 0 5555555 0 2222 0 888888 8 00 000 8 0 00 0000000 00 0 0 00000000000 55 00000 555 2 2 88 5 0 0 0 8 8888 4 0 00 0 0 0 8 2 0 6666666 2 7 333333 5 555 7 77777 7 222222 7 7 7 7 7 7 7 7 7 7 88888888888888888888888888888888888888 7 7 777 7 7 5 7 333 22 7 7 8888888888888888888 33 777 0000 0000000000000000 8 222222222 0 00 7 999999999999999999999999 2222 7 555555 2222222 888 7 7 7 7 66666666666666666666666666666666666666666666666666666666666 8 0000 8 000 0000000000 00000000 8 0 88 0 888888888888 0 88888 0 88 22 2 00 0 000 0 555 5555555555 0 2 5 0 0 2 88 88 5 5555555 000000000000000000000000000 0 0 2222 3 33333 777 2 7 0 555 888 777 7 5 7 7 7 5 3 333333333333333333333333333 6 88888888888888888 0 000000 0 888888888 5 5 8888 888888 888888888888888888888888888888888 22 0 0 7 3 3 4444444444444444444444444444444444 77 444444444444444444444444444 0000000000 666 7 33 7 77 7777 99 7 7 7 2222 3 7777777 3 99 4 99 4 6 33333 7 000000 00000000000 55 7 2222 2222 3 7 7 7 7 2222222222 777 777 7 55 7 3 777777 7 7 7 99 99 7 99999999 7 7 7 88 7 7 222 999 7 7 000 000 99 3333 99 4 1111 7 7 99 4 999 777 7 7 7 7
consensus : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTG---TT-CTCAGAA----TAAAAAA---TAATTCTCAGCT-G-A-G--AACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACAGACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CG----TAC-T-GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAA-CATAGNCAACAT------AT---GA-C-AT---G-CCCC-AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAAT-AGTTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT-----ATCTGA--------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC-GGTG--C--------AGA-----CGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGTG-AAG-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTA---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGCCG-----CCCGA-A-TTTCCC-TCCCGGCCNGCAG--TTCTCGAA---AT-GTTNA-AGCCGTCACCCGATCGA--GC--AGCTG-----G--GTCG---CTACGG--TC-GCGCAA------AAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GACAAGGCCAT----A-TTC------CTC-----------CTT---C----A-AAT--CCCCCTGGA-TNGCATCGCGTA--GACACGAAACG-----C-----------CCCCCCGCCGGAATCG-GTAAACN--CGN---T-TCGA----C---TCAATA-------AA-GCCGA--GG-G--AT-CCGCTC-G--GTCCC--GGA-ACACC-CGCGGG-GCA----AGTAAA-------CCTTG--CC-GAT--A-TCATC--G-ATT-TC---G--TTAC--AG-A-----TGTACAA-CA-G-T-AGCCATT----CTTGTTTTTG-AG-A-AC-AAA---AAAAC--TATACTTAAGTC-TTGC---T-ATGA-A-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-AC-TT---GAG---AA--AAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
Reference ( family-3473 ) : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTG---TT-CTCAGAA----TAAAAAA---TAATTCTCAGCT-G-A-G--AACTT-CA--TAT----AAAA---AT----TGGAGAGACAT--AAACAGACTTGAGAATT-TT---CTT--AGCT-GAGAAAAAAAA-AC--CT----CG----TAC-T-GAGAACT-TTTTTTTGCAC-ACGACANC-G-T-AT-CT-AAGC-TGA--TTTTGGAACT--CTT---CT-GTAA-T-ATAA-G-GTA-TAAAAAAA--GAA-CATAGNCAACAT------AT---GA-C-AT---G-CCCC-AGA---GTCGGC----CA-----T-----TT-TTTTTTCC---GGGGGGGGGGGGGG---GGTT-A----ACAACGCAC-GATGCATNATAGGAAA-TG--TN-T-ACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAN--T-C-ACATAACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CACC-ACTCAAT-CT-AAGGGGAGA--TCA-AT-CTGCTTCAGTTGAATACCAT-CAAGGAAAAAT-AGCTTAAATT-AG-CGG--CCCAATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AACTTTCAACTT-AAAT----AATCTAA--------------CCATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCC-GGTG--C--------AGA-----CGATGGACGTTGTTG--TTGTTACAA-A--TTAAT----ATA--G-A-GATATATCCA--TAGGT--AAG-GGACC--TGAGTGCAA-TATGA-------N---------A------GC----C-ATT--T---AGGTAAAGTTTN---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CN---TTAT----ATTACCC---CCCCCCCCT--AA------GGCT--------TTCCTTTAAAAT-GTTTA-TTCAAT-A-------CTTGCTTAGG-ATG-T-T-TGNA--AATAAAGCCTAAAAGAAAGAA-AA--TTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATTTTGTGT-GC-AACATCT--CCA--CGGGAA--ATTAAACGA-CGAA-------AAAN-GCA----A-TCG-A-GGTAGC-CCGCCGCCG-----CCCGA-A-TTTCCC-TCCCGGCCCGCAG--TTCTCGAA---AT-GTTCA-AGCCGTCACCCGATCGA--GC--AGCTG-----G--GTCG---CTACGG--TC-GCGCAA------AAATC-TC--AA--GCA-CAGNA--AGCAGTGACAGTATGGG-TG-GACAAGGCCAT----A-TTC------CTC-----------CTT---C----A-AAT--CCCCCTGGA-TTGCATCGCG-A--GACACGAAACG-----C-----------CCCCCTGTCGGAATCG-GTAAACN--CGN---T-TCGA----C---TCAATA-------AA-GCCGA--GG-G--AT-CCGCNC-G--GTCCC--GAA-ACACC-CGCGGG-GCA----AGTAAA-------CCTTG--CC-GAT--A-TCATC--G-ATT-TC---G--TTAC--AG-A-----TGTACAA-CA-G-T-AGCCATT----CTTGTTTTTG-AG-A-AC-AAA---AAAAC--TATACTTAAGTC-TTGC---T-ATGA-A-CCAAACTTAA-G-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCTCACAA-ATTTTTCTCA-AC-TT---GAG---AA--AAATATAG-AAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-T-TTTTTTTTGTCT---GAGAAT-TGGTTT-TATTGGTGTCAT
gi|1 : ATGACAATAGAACAATAAAAATTCACTCAGCACAAAAATTTTGAAATT-CTCAGAAATCATAAAAAAACATAATTCTCAGAT-GCA-G--AACTTACAAATATTAACAACA---AT----TTGAGACCCATTTAAACAGACTTGAGAATAATTAAACTT--AGCTTGAGAAAAAAAACAC--CCTAACCGATACCAC-TCGAGAACAATTTTCTTGCACCACGACACT-G-T-AT-CT-AAGC-TGAAATTTTG-AACTACCCT---CTCGTAAAT-TTAACG-GTAATAAAAAAA--GATTCA---GCAACAT------AT---AAAC-AT---GGCCCC-AAAAGCGTCGGC----CAAAATCT-----CTATTTTTTCC---GGGGGGCGGCGGAGCGCGATT-GTAACACACCGCACCGATGC-TAATAAGAAA-TGGCCG-T-ACTTTGCAATTT----TTTTCCCCAAAAAACATTTGAGGCACTACATATTCAGACAAAATCAACAAAAGGTTTTAAACAGGCTACTGTTCATCAT--TAC-ACATAACATAGTA-CAATGACTAAG--CTA-CACAAATACATT---TGA--CATAATTTTACTAATTCGTTTGCATC-CACC-ACTCAAT-CTCAACGGGAGA--TCA-ATTCTGCTTCAGTTGAA--------------------GTTTAAATTTAG-CAGGCCCCAATTCACCTTCTTTCTAAGTTTGT-ACGCTTTT-AGCCAATA------TTTTTGT-ATATAG-CTTCTA-AATTCTCTATTCTAAAAAGT-AACTTTCAA------------------A--------------C-ATT---TATTTGAAGCA-CTTTTATTGAACA-TGA-GCAGCGACATTATTCAAAA--AGGTCAAAGGCC-AGTG--TCATTACGTAGA-----CGATAGGCATTGTTG--TTGTTACA---------------------------TATCCAATTAGGG--AAGCGGACCACTGAGTGCAACTATGA-------TCAGGGCGAAA------GC----CCATT--TTAGAGGTAAAGTTTACAAA-TCTAACTCCTCAACGCAAGATATTCTCCTGACTTGAATATTGT---TATTAGACTTAAAGTAT--ATCATCTGAGGCA--CT---TTAGCAAGATTTCCC---CCCCCCCCTTTAA------GGCT--------TTCCTTTTAAATAGTTTAATTCAATCA-------CTTGGTAAGG-ATG-TGT-TGCC--ACTAAAGCCTAAAAGAAAGAACAA--ATAACAGGCATAAATTCTCCTAAA--ACTCACTATCCACTTATATTGTGTTGCTAACA-AT--CCA--C-------ATTAAACGAGCGAA-------AAAAAGCA----AATCG-AAGGTAGC-CACCCGCCGG----CCTGACA-TTTCCCCTCCCGGCCTGCAGCTTTCTCGAAGATAT-TTTCA-AACCGTCAACGAATCGATTGCTCATCAA-----GAAGTTG----TATGGACTC-GGGTAAGCTATAAAATC-TC--AAAAGCA-CAGAA--AGCAGTGACAGTATGGG-TG-ACCAAGGCCAT----ATTTC------CTC-----------CTTCAAC----A-AATTCCCCCCTGGATTTGCATAACA-ACGGACATGAAACA-----CCACCCCACCTACTCCCTGTCGGAATCA-GGAAACA--CGG---TATCGA----C----CAATA-------AAGGCCGA--GG-GCAAT-CTG-TT-GACATCCC--GAACACACCTCGCGGG-ACA----AGTAAA-------CCTTG--CCAGATTCATTCATC--G-ATTATC---T--CTAC--A--A-----TGTACAA-CATG-T-AGCCACT----CTTGTTTATG-AG-ACAC-AAA---AAA----TATACTTAAGTCGGTGCATAT-ATGA-ATCCAAACTTAA-GCA--TTTATTTC-A-TTGCT--GAAAGTACCGAAATTTGTAC------TG-A-GAATCTTTTTCAT-GG-TCTCA-AC-TTTTTTCTCATAC-TT---GAGACAAA--AAATATGA-ACATTTTCTGAGAAAAA-AAAAACA-TTCGAGTTTGAGAA-T-CTTTTATTGTCT---GAGAAT-T-GTTT-TA-TGGT
gi|10 : aACCATAAAACAATAAAT-TCT--TCAG-ACAA---TTTTG---TT-CTCAGAA----TAAAAAA---TACTTCTCAGCT-G-AGG--AACTT-CA--TAT------AA---AT----T---GAGACAT--AAACAGACTTGAGAATT-TTC--CTT--AGCT-GAG---AAAAA-AC--CT----CG----TACTT-GAAGACT-TTTTTTT
gi|11 : tgaGCCACCG-----CCCGA-A-TTTCCC-TACCAG-CAGTAT--TCCTGGAA---AT-GTTGA-GGCTGTC-TCCAATT-A--GC--AGCTG-----G--GTCG---CTCCGG--TT-GC-CAA------AAACC-TC--
gi|12 : acccacggggaatgcgatgacatttctgaatgcgctcactagcaacgtgACAATGCCAT----G-TTC------CTCTTTGTCTCCTTCTC---C----A-AAT--GCCCCTGGA-TGGAATCGTGTA--AATACAAAATA-----G-----------TCCCCCGCCGAAATCT-GTA
gi|13 : TTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-CTCAACTTG-A-GAAccgttcaaaaggctccacatcgtca
gi|13 : AA-ATTTGTCTCA-AC-TT---GAG---AA--AAATAT-G-AAA--TTCGGAG----AGAAAAACA-T--GAG-TTGAGAATT-TTTTTTTTGTCT---GAAAAT-T-GTTT-TA-TGGTGaaatatgaaattcggagagaaaaacatgagttgagaattttttttttgtctgaaaattgttttatggtggt
gi|14 : ttttttcattctgagtacgA-TATGA-------A---------A------GC----C-ATT--T---AGGTAAAGTTTC---A-TCTAAT--CTTAA-GAAAGA-ATTCT---------------G-------------TGAA--------------------------TTAT----ATTACCC---CCCCCCCCC--AA------GGCT--------TTCCTTTAAAAT-GTTTA--TCAAT-A-------CTgt
gi|15 : tatgTGGA-TGGCATCGTGTA--GATACAAGATG-----G-----------TGCCTCGCCGAAATCT-GTA------CCT---T-TCAAATAGC---TCAACATCGTCATAA-GCTAA--CG-G--AT-CCACTC-G--GTCTC--GGA-ACAC
gi|16 : aAA-GT-AACTTTCAACTT--------------------------------------TATTTGAAGCA-TTTTCA---AA-A-TGATTCAGGAG-ATTATC---AA--AGGTCAA-GGCC-GGTG--C--------AGC-----CGATGGATGTTGTTG--TTGTTACAA-A--TTA
gi|17 : TTAAATT-AA-CGG--CCCAATTCACT--CTTTCTAAGTTTGT-G-----TT-AGCAACTACATGTATTTT-GT-AT-TAG-CT-CCA-A-TTCTCTATTCTAAAA-GT-AACTTTCAAC
gi|18 : CATACTACCATAAAA-TAC--TCAG-AAAAAA-TTTCA---TT-CTTGGAA----TAA-AAA---TAATTTTCAGTT-G-C-G--AAATT-CA--TCT----AGAATTCATGCCATGAAGAGA
gi|19 : ---T-TCGA--------TCAATA-------AA-GGCGA--GG-GG-AT-CTGTCC-G--GTTCC--GAA-ACACC-CACGGG-GCAAGCTAGTAGACCTAAGTCCTTG--CC-GAT--A-TCGTC--G-ATT-TC---G--TTt
gi|2 : ATGACCATAAAACAATAAAA-TTC--TCAG-ACAAAA-TTTTG---TTTCTCAGAA----TAAAAAA---TAGTTCTCAGCTTG-A-GTGAACTT-CA--TAT----AAAA---AT----TGAAGAGACAT--AAACAGATCTGAGAATT-TT---CTT--A-CT-GAGAAAAAAAA-AC--CT----CGT---TAC-T-GAGAACT-TTTTTTTGCAC-ACGACA-C-G-T-ATGCTAAAGCTTGA--TTTTGGAACT--CTTCTGCT-GTAA-T-ATAA-G-GCA-TAAAAAAAAGGAA-CATAAGCAACAT------AT---GA-T-A--------AC-AG-------GCC----CA---------------TTTTTCCGGGGGGGGGGGGGGGGG---GGTTAA----ACAACATAC-GATGCATTATAGAAAA-TG--TT-T-ACTTTG-AATGTCCCCCCCCCCCCCCAACGCATTTGAGG-A-TA-ATATTCAGA--AAATCAACAAA---TTTTAAA-AGGT--CTGTTCATCAG--T-C-ACAT-ACAT-GTA-TA--------G--CTA-CACAA-----TT---TGATACATATTTCTA--AAGTTGTTTG-ATCACACC-ACTTAAT-CT-AAGGCGAGGACTCA-AT-CTGCTTCAGTTGAATACCAT-CAGAGAAAAATAAGTTTAAATT-AG-CGG--CCCAATTCACTCT-TTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TTG-CT-CTA-A-TTCTCTATTCTAAAA-GT-AAATTTCAACTT-AAAT-----ATCTGAAT------------CTATT---TATTTGAAGCA-TTTTTA---AA-A-TGATGCAGGGG-ATTATC---AA--AGGTCAA-GGCCGGGTG--C--------AGA-----CGATGGATGTTGTTGAAACATTACAA-A--TTAAT----ATACGG-A-GATATATCCA--TAGGTG-AAG-GGACC--TGAGTGCAA-TATGA-------T---------A------GC----C-ATT--T---AGGTAAAGTTTA---ACTCTAAT--CTTAA-GAAAGA-ATTCT---------------GT---T----GACTTGAA---T--AT-----GA---A--CA---TTAT----ATTACCC---CCCCCCCTT--AA------GGCT--------TTCCTTTAAAAT-GTTTACTTCAAT-ACTAGCGCCTTACTTGGGCATG-T-T-TGCA--AATAAAGTCTAAAGGAAAGAA-AA--CTAACAG-CA---ATTCTCCTAAATTCCT-----TCCA-TTGTTTTGTGT-GC-AACATCT--CAA--CGGGAATTATTAAACG--CGAT-------AA---GCA----A-TCGCA-GGTAGC-CCACCGCCGCGGCTCCCGA-A-TTT-CC-TCCCGGTCTGCAG--TTCTCAGA---AT-ATTCAGAACCGTCACCT-ATCAA--GC--AGTTGTGTATG--ATCAGGTCTACGA--TT-ATAC-A------AGATC-TCCTAA--GCA-CAGCACTAGT--TGACAGTATGGGTTGCGA-AAGGCCATAATAA-TTC------CT------------CTT---C----ATAAT--CC-----GA-T----CCG---------ACTA---------C-----------CCACCTGTC-GAATCGCGT-TATT--CGC---T-TCGA----TG--TCAATA-------AA-GCCAG--GG-G--AT-CTGCGC-G--GTCCC--GAA-ACACC-CGCGGG-GCA----AGT--A-------CCTTG--CCGGAT--ACTCATC--GTATT-TC---GTTTTAC--AG-------TGTACAA-CA-GTT-AG-CACT----CTTG-TTTTG-AGCA-ACAAAA---AAAAC--TATACTT-AGTC-TTGC---T--TGA-A-CCAAAC-TAA-G-A--TTTTCTTCTA-TT-CTTGG--AGTA-GAGAATTTGT-C------TG-AGGAATCTTTT--AT-GGACCTCACAAGATTTTTCTCA-AC-TTAGGAAG---AA--AAATATTGAAAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA-TGTTTTTTTTG-CT---GAGAAT-TAGTAT-TATCAGTGTCAT
gi|20 : -GACAAGGCCAT----A-TTC------CTC------------TT---C----A-AAT--CCCCTTGGA-TTGCATTAC--A--GACATG-AACA-----CA----------CCCCCTGTCGGAATCG-GTt
gi|21 : tCA-A-GGT-----CGCCAC-G-----CCCAA-T-TTTTCC-TTCCGGCTGCCA----TCCCTAA---AT-GTTAC-AGCTGTC-TCCTATTAA------AGCTG-----
gi|22 : CCCAAAACATTTGAAG-A-TG-ATATTCAGA--ACATCAACAAA---TTTTAAA-AGGT--CTGTTCATCA
gi|23 : tttATGACCATAAAACAATAAAA-TTC---GAG-AC--AA-TTTTG---TT-CTCAGAA----TA
gi|3 : tATGACCATAAAACAATAAAA-TTC--TTAG-A-AAAA-TTTTG---TT-CTCAGAA----TAAAAAA---TAATTCTCAGCT-G-A-G--AACT--CA--TAT----AAAA---------TGGACCAAT-C--AAACAGACT-GAGAAT-------CTT--AGCT-GA--AAAACAG-CC--CT----CG----T-C-T--AGAACT-TTTTTC--CAC-ACGCCAAC-GGT-AT-CT-AAGC-TGA--TTT-GGAACT--CT----CT-GTAA-TGATAA-GAGTA-TAAAAAAA------CATAGCCAACATTAAACAATCTCGA-A-ATATGG-CCCA-AGA---GTCGGC----CA-----T-----TT-TATTTTC-----GGGGGGGGGGGGG---TGT-------ACAA-GC-----CGTATCATAGAAAAGTG--TTGT-ACTTGA-AATTT----TTT---CCCCAAAACATGAAAGG-A--A-ATAT-CAGA--AAGTCAACAAA---TTTTAAA-AGGT--CTGTTCATCAT--T-CCACATAACAT-GTA-TA--------G--CTA--ACAA-----TTATTTGATACATATT-CTA--ATGC--TTTG-ATC-CACCCAC-CAATTCT-AAGG--AGA--TCA-AG-TCGCTT-AGT-GAATACCAT-CAAGGAAG--T-A--TTAAATT-AGTCGG--CC-AATTCACTTTCTTTCTAAGTTTGT-G-----TT-AGCAACTA------TTTT-GT-AT-TAC-CT-CTCCA-TTCTCTAT-CTAAAA-GT-AACTT-CAACTT-A--------------------------------------TTTCGAACA-TTTA-A---AA-A-TGAT-CAGGGA-ATTATC---AATAAGGTCAA-GGCC-GGTGGTC--------AGA-----CGATGG-TGTTGTTG--TTGTTATAA----TTAAT----ATA--GGA-GATATA-CCA--TAGGT--AAG-GAGCC--TGA-TGCAA-TATGA-------A---------ATAGAAAAC----C-ATT--T---AGGTAAA-TTTA---A-TCTAAT--CT--A-AAAAGA-AT-CT---------------GTACAT----GAAATGGA---TTAGT-----GG---A--TAGAATTAT----ATTGTCCTTGCCCCCCCCT--TA------AGCT--------TTCCTTTAAAAT-GTTTA-TCAAAT-A-----------CTTAGG-ATGAT-T-TGAATGAAT-AAGCCTAAAAAAAAGAA-AAAGTTAACAG-CA---ATTCTCCTAAA--CCT-----TCCA-TTATCTTGTGT-GC-AACATCT--CCAACCGGGAA--AAAAAACGG-CG-A-------AAAG-GCA----ATTCG-A-GGTA-T-CCACC-CCG-----CCCGA-A-TTTCCC-TCCCGGCTCGCAG--TTCTCGAG---ATAATTCA-ACCTTTCACCTGATCGA--GCT-ATCAA-----G--GTTG----TATGGGATCGGTATAAT-----AAATCATC--AA--GCACCAG----AGCA-TGACA-TATGGG-T--GACAAAGCCAT----A--TC------CT------------CTT---C----A-AAT--CCCCCTGGA-TTG-ATCACG-G--GACATGGAACACCCCCC-----------CCCCCTGTCGG-ATCG-GTA---G--CG----T-TCGA----T---CAAATA-------AATGGCGATTGGCG--AT--CGTGC----GTCCC--GAA-ACCGC-CACGGG-GCC----AGT-AA-------CC--G--CC-AAT--A-TCAAC--G---T-TC---G--TTAC--AG-A-----TGTAC-A-CA-G-TAAGCCATT----C-TG---TTG-AG-A-A--AAC---AAAACCATATACTTAAGTC-CTGC---TAATG--A-CCAAACTAAATG-A--TTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGT-C------TGAA-GAAC-TTTT--AT-GG-TCTT-CAA-A-TTTTCTCA-ACTTT---GAA---GA--AAA-GTAG-AAA--TTC-GAT----G-AAAAACA-T--GAG-TTGAGA-----TTTTTTTGTCT---GAGAATATGGTTTGTAT
gi|4 : ATGG-------A---------A------GC----C-ATTAATG--AGGTAAAGTTAT---A-TCTAA------AG-GCAGGA-GTCCT------------------------------------T--AT-----GA---AATCT---TT-T----AT-ACCC---CCCCCCCCC--CACCCCCCGGTTAAATCAAATGCC---AAACT-GTTTA-TTTAAT-A-------CTTG--TAGG-ATA-C-TATGAA--AATG--------------GAA-AA--TTACCAG-CA---ATTCTCCCGAAAGCCC-----TCCA-TCACTTTAT-T-GC-AACATCCACCCA--CGGGGG--A--AAGCGA-TGAACATCTCTAAAT-GCGCATCA-CCA-A---CAACGTCGCCACCG-----CCCGA-AATTTGCC-TACCAGCA-GCAT--TTCTTGAA---AT-GTTGA-GGCTGTCTCCCAATTAA---C--AGCTG-----G--GTC----CTCCGG--TT-GCGCAA------AAACC-TC--A---GCA-TAGTA---GTAAGGA-AACATGGG--A-GACAGAGCCAT----G-TTCTCTTGTCTC-----------CCT---CTCCAG-AAT--GGTCATGGA-TGGCATCGTGTA--GATACAAGATG-----G-----------TGCCTCGCCGAAATCT-GTAATCTTTCAAATAT-TCGA----CATCTCA-TA-------A--GCTAA--CG-GT-AT-CCACTC-G--GTCTC--GGA-ACACC-CGTGGAAGCA----GGCAAA-------GCCTGGACC-GAT--A-CCTTCTTG--TT-TCTACG--TAAA--AGTC-----TGTGCAGGCA-G-C---CCATT----TTTATTTTTGCAG-A-AC-AAATTT----T--TATACTTAAGTC-T-GC---T-ATGGGA-CCAAACTTAA-G-AATTTTTTTTC-A-TT-CT--G--AGTA-CGAAATTTGTGC------TG-A-GAATGTGTT--ATCGG-TCTCA--A-ATTTTTCTCA-AG-TT---GAG---AATAAAATAAAA-GAA--TTCTGAG----A-AAAAACA-T--GAG-TTGAGAA----TTTTGTTATCTA--GAGAAT-TGTTTT-TATTGGTg
gi|5 : cgaaAACAAA---TTT--AA-AAGT---TGTTCATCAAAGT-A-ACATT-CAT-GTAATA--------GAGCTAACGCAA-----TT---TGATACATATTTCTA--AAGTCGTTTG-ATC-CATC-ACTTAAT-CT-AAAGGGAGA--TCACAT-CTGCTTCAGTTGAATA-CATGCAAGGAAAAAT-AGTTT--ATT-AG-CGT--CCCAATTCAC-TTCTTTCTAAGTTTGTGG-----TTAAGCAACTA--------TT-GCAAT-TAGCCT-CTA-A-TTCTCTATTC-AAAA-GTAAACTTTC--CTT-AAAT----AATCTAAG-------------CTATT---ATTTTGAAGCATTTTTTA---AA-ATTGATGCAGGGG-ATTATCA--AA--AGGTCAA-GGCC-GGTG--C---------GA-----CGATGGATGTTGTTG--TTGTTACAA-AACTTAATTTTAACC--G-AGGATATATCCAT-TAGGTGAAGG-GGACC--CGAGTGCAA-TATGA-------T---------A------cat
gi|6 : -------AA-GCTAA--CG-G--ATTCCACTCCG--GTCTCTCGGA-ACACT-CGTGGA-GCA----GGCAAA-------GCCTG--AC--AT--A-CCTTC--T-GTT-TC---T--ATGCGTAA-ACGTCTTGTGCA--CA-G----ACCATT----TTTATTTTTG-AG-A-AC-AAA---ATTTC--TATACTTAAGTC--TGC---T-ATG--A-CCAAACTTAA-G-A--ATTTTTTC-ATTT-CT--G--AGTA-CGAAA-TTGT-C------TG-A--AATGTTTTC-AT--G-TCTCA-AA---TTTTCTCA-AG-TT---GAG---AA--AAATAAAG--AA--TTCTGAG----A-AAAAACATT--GAGATTGAGAA-T-TTTTTTATGTCTTTAGAGAAT-TGTTTT-TAATGG-GTCATt
gi|7 : tcatggatggctcgtagtagataccaagtatggtttgcctcgcccgaagatcatgtacctttcaatagcgctcaacatgtcatTTTG-ATC-CACC-ACTCAAG-A--AAAGGGAGA--GCA-TT-CTGCTTCAGTAGAATATCAT-CAAGGAAAAAT-AAC---ACTT-TG----------ATTCACTT-CTGCCTAAGTTTGT-G-----AT-AGGAACTA------TTCC-GA-AT-TAG-CT-CTT-A-TTCTTTATTCTTAAG-GT-AACTTTCAAATTAAAATTGTAAATCTGACACACGCAGCAGATCCATTTAATATTTGAAACC-TCTTTT---AA-A-TGATGCAAGGG-ATTTTC---CA--AGGTCAA-GGCC-AATT--C--------AGAGTCAGCGATGTACA--ACCA---TGTTACAATA--TTAATC---ATA---------ATATT---------------GGACC--GGAGTGCAA-TATGACATACGGA---------A------GCCATAC-ATT--T---AGGTAAAGTT-------TCT-GT--CTTAA-GAAGGA-GTTTT---------------G----T----AACTTGAT---T--AT-----Gaggccct
gi|8 : ---TAATTCTCAGCT-G-A-G--AACTT-CA--TAT----AAAA----T----TG---AGACCT--A--CAGACTTGAGAATT-TT---CTTTTAGCT-GAGAAAAAAAA-ACACCT----TG----TAC-T-GAGAACT-TTTTTTTGCAC-ACGACAGCGG-TAAT-CG-AAGC-TGA--TTTTGGAACT--CTTG--CT-GTAA-T-ATAA-G-GTA-TAAAAA-----AA-CATAGCCCACAT------TA---AA-CTAT---T-CTCTGAGA---ATTGGCAAAACA-----CTTTTATT-TTTTTTCC---TGGGGGGGGGGGGG---G--T-A----CAAACACAC-GATGC-TAATA-GAAA-TG--TG-TAACTTTG-AATTT----TTTTCCCCCCAAAACATTTGAGGAA-TA-ATATTCAGT--AAAACAA
gi|9 : TTG--TC-GAT--A-TCATC--G-ATT-TC---G--TTAC--A--------TGTACA--CA-G-T-AGCCATCTTAGCTTGTTTT-G-AG-A-AC-AAA---AAAA---TATACTTAAGTC-T-GC---T-ATGA-A-CCAAAC-------------------A-TT-CT--G--AGTA-CGAAATTTGT-C------TG-A-GAATGTTTT--AT-GG-TCT--CAA-ATTTTTCTCA-AC-TT---GAG---AA--ACCTAT-G-AAA--TTCTGGG----A-AAAAACA-T--GAG-TTGAGAA---TTCTTTTTGTCT---GAGAAT-T-GTTT-TA-TGGT