lowQualScore : 111111111111111111111111
lowQualScore : 111 1111 777777777777777777 55555 999999999999999999999999 22222222 11 33333 1111 1 55555 1 1 33333 666666666666666666666666666 55555555555555555 3 11 22222222222 555555555555
lowQualScore : 000 99 6 4444 555555555555555555 6 99999 1 8 1 000000000000000000000000 44 99 99 77777777 55 88888 6 6 9999 1 0 55555 8 55 5 5 5 9999 55 44 99 44 3 9 2 88888 55 999999999999999999999999999 66 4 55 44444444444444444 1 777 4 4 8888 33 0 33333333333 777 5 333333333333 5 7
lowQualScore : ... .. . .... .................. . ..... . . . ........................ .. .. .. ........ .. ..... . . .... . . ..... . .. . . . .... .. .. .. .. . . . ..... .. ........................... .. . .. ................. . ... . . .... .. . ........... ... . ............ . .
lowQualScore : 777 22 7 2222 000000000000000000 0 00000 4 0 4 666666666666666666666666 77 22 22 77777777 88 22222 0 7 7777 4 2 44444 4 00 6 7 8 6666 00 66 88 22 1 1 6 33333 00 000000000000000000000000000 11 0 55 99999999999999999 1 000 0 0 5555 44 1 00000000000 888 0 111111111111 7 8
consensus : CGACTTA--ATGAAATCGG--TTTT-CATTA----CGTC---------------CGNACCATTAATAT--ATAAAAGTGATACA-TACTCGACAA--TGAATA--TGTTCTCTTT-NATTCANNAAG-GC--GAG---G----TTTTT--CTCGTTGTAT-TACAA-AAA-T--TGGCTTTATTTGAACAAATCGTC--CAAAAT--ATGTCG-AATTAGTGTG---A--TAT--TGTG-AATA--TGTTGAC-ATTTCAGTTATCGACTTC--AAA--TTTATCTG---AAA-CA-A--A-CG--CA--A-AAT--ATGTCG-AATTA--GTGTGA---TA-------T-GTGAATAA---GT-TGACA-TTT----CAATTATCGACTTCAAAT-T-AA--GT--TG---AAATCG-AC---GT---AATGAAAACCGA-TTTCATTAAGTC
Reference ( gi|2 ) : CGACTTA--ATGAAATCGG--TTTT-CATTA----CGTC---------------C-CATCATTGATATTCATGAAAGTGATACA-TACTCGACCACCTGGACACCTGATCCCACC-CATTCAACAAA-GC--GAG---G----TTTTT--CTCGTT-TATATGCAA-AAA-T--TGGCTTGATTTGAACAAATC--T--CAACAT--ATGTCGCAATTAGTGTA---A--TAT--TGTA-AATA--TGTTGAC-ATATCAGTTATCGAC--C--AAA--TTTATCAG---AAA-CA-A--A-CG--CA--ACAAT--ATGTCG-AATTA--GTGT-A---TA-------T-GTGAA-AA---GT-TGACA-TTT----CAATTACTGACTTCAAAT-T-AA--GT--TG---AAATCG-AC---GT---A--CAAAACCGA-TTTCATTAAATC
gi|3 : CGACTTC--ATGAAATCGA--TTTT-CCTTA----CGT
gi|1 : attcagcaacgcgagatgtttttatcgttgcaatacaaaaaattggcttgatttgaacaaatcgtccaatatatgtagcattagtgtgatattgtgaatctgttcacatttctgttatcgacttcaaacctatctgtacaaatcgaccaaaatgtgtcgaattagtgtgatattgtgaataagtcgatatttaaaacagttatcgatttcaaattaaaattgaaatcaCGACTTC--ATAAAATCGG--TTT--CATTATATGCGTCGTTGTGATAACAAATCGCACCATTAATAT----AAAAGTGATATAATGTTC-----TCT------TTGAT----------TCAAGTAG-GC--GAGAATG----TTTTT--CTCGTTGTAT-TACAA-AA--TCCTGGCTTCATTTGAAGAAATCGTT--CAAAAT--ATCTCA-AATTAATGTG---A--TAT--TGTT-AGTA--TGTTGAC-ATTTCAGGTGTTTAA--T--AAGATTTTTTCAT----AA-TA-A--ATCGTCCA--A-AAT--ATGTCT-AAGAA--ATGTGA---TAT------T-GTGAATAA---GT-TGACA-TTT----GAATTA---------------AA--GT--TG---AAAACG-AT---GT---AATGAAAACAGA-TTTCATTAAGTCgt
gi|13 : tgacgatacatgtatcttctcatCGACTTA--ATGAAATCGGTTTTTT-CA-CA----CGTC---------------C-GAT
gi|16 : gaaatatttcgaataagtctgatattgtgaataaatgtgagattcaattatcgacttcatttgaaCAACTTG--ATAAAGTCGC--TTTT-CATTA----TGTC---------------at
gi|11 : ctttttcattgatcaatacatgtaagCAATTTACCATGAAATCGG--TTTTCCATTA----Cgttctgacaa
gi|1 : acgatatgttctcattaaatcaaGACTTA--ATGAAATCTG--TTTT-CATTA----CATC---------------aggtacgtcattctggttctggtaacaaatctcggcattaatatgaatgtgatataactcgacgatgtgttctc
gi|6 : tgacgatacatgtatcttctcatcgacttcataaaatcggtttcattatatgcgtcgttgtgataacaaatcgcaccattaatataaaagtgatataatgttctctttgattcaagtaggcgagaatgtttttctcgttgtattacaaaatcctggcttcatttgaagaaatcgttcaaaatatctcaaattaatgtgatattgttagtatgttgacatttcaggtgtttaataagattttttcataataaatcgtccaaaatatgtctaagaaatgtgatattgtgaataagttgacatttgaattaaagttgaaaacATAAAAGTGATACA-TACACGAC------AATA--TGTTCTCTTT-AATTCATGAAG-GT--GTG---A----TTTTTTTCTCGTTGTAT-TACAA-AAACT--TGGCTTTCTTTGAATAAGTCATC--CAAAAT--ATGTCG-AATTACCATG---A--TAT--TGAG-AATA--TGTTGAC-ATTTCA
gi|8 : aggtcattctgataagaaatcgtacagttaatATAAAAGTGATACA-TACACGAC------AATA--TGTTCTCTTT-AATTCATGAGGTGT--GAT---G----TTTTTT-CTCGTTGTAT-TACAA-AAACT--TGGCTTTCTTTGAATAAGTCATC--CAAAAT--ATGTCG-AATTACCATG---A--TAT--TGAG-AA-A--TGTTGAC-A
gi|10 : taggtcatttctgataagaaatcgtacagttaatAAGTGATAGA-AACTCGACAA--TG--CAC----TCTTTTT-CATTCAACAAA-GCAAGAA---G----TTTTT--CTCGTTGTAT-TACAA-AAA-A--TGG----------ACAAATCGTT--CAACAT--ATGTCGTA--CAATGTACATG--TAT--TTTATAAT---TG-TGAC-AT
gi|12 : GATATA-TACTCGATAA--TG------TGTTCTCTTTGCATTCAACAAA-GC--AAA---GTGGTTTTTT--CTCGTT-TGTATAAAATAAA-T--T
gi|3 : tcgcacagaaaacagaagtgcatcgtacATTCAGCAAC-GC--GAGAT-G----TTTTT--ATCGTT-GCAATACAA-AAAAT--TGGCTTGATTTGAACAAATCGTC--CAATAT--ATGTAGCA-TTAGTGTG---A--TAT--TGTG-AATC--TGTTCAC-ATTTCTGTTATCGACTTC--AAA--CCTATCTG----TA-CA-A--ATCGACCA--A-AAT--GTGTCG-AATTA--GTGTGA---TAT------T-GTGAATAA---GT-CGATA-TTTAAAACAGTTATCGATTTCAAAT-TAAA--AT--TG---AAATCA-AC---GT---AAGGAAAATCGA-TTTCATGAAGTCtg
gi|4 : -T--TGGCTTCATTTATACAAATC--CTCCAAATT--ATGTCGAAAT-GGTGTG---A--TTT--TGTC-AATA--TGTCGAC-ATTTTATTTGTCGACTTC--GAA--TTTATC-G---CAA-CATATTA-CT--CG--A-AAT--ATGTCG-AATTA--TTGT-GAT-TT-------T-ATGAATAA---TT-TGACT-TGT----CAATTATTGACTTTAAATAT-AT--GT--CG---AAAACA-AC---TT---AATGAAACCCGA-TTTAATCAACTCggt
gi|9 : cTTTATCTGCCCAAATCGAT--GAAAATTTATGTCGGAATT-GTGTA---GATTAT--TGTG-AATA--TG-TAACAATTTCAATCATCGAT--CTAAAA--TTgcttagttgatttaatgaaaagatgttgtc
gi|7 : attatgttgacattttatttaaaATCTGAACAAATCGAC--CAAAAT--ATGTC-TAATGAGTGTG---A--TAT--TGTG-AATA--AGTTGAC-ATTTCAATTATCGACTTC--AAA--Taaagttccaatcaacacaataaaaaaccgattttcatgaa
gi|5 : gaatttgtcgcagtagtgtgatattgtgaatgtgttgacaattcacttatggatttcaaatctAACAT--ATATCGCG-TTAGTGTG---A--TATATTGTG-ACTA--TGTTGAC-ACTCCAATAATAGACTTC--AAA--TTTATC-T---AAA-CA-A--A-TGGACA--GAAAC--ATGTCG-AATTG--GTGT------------------GAATAA---GT-TGATC-TTC----CAATAATTAACTTCAAAT-TAAA--GT--TG---AAATCG-AA---GTAA-A--GAAAACCGA-TCCTAATAAGTCaaaaaatgaattcgacgtaatgaaaagtggttcattaata
gi|7 : aaatcgtcagaacaAT--TTGTCGCAGT-AGTGTG---A--TAT--TGTG-AATG--TGTTGAC-AATTCACTTATGGATTTC--AAA--TCTATCTG---AA--CA-A--ATCGACCA--A-AAT--ATGTCT-AATGA--GTGTGA---TA-------TTGTGAATAA---GT-TGACA-TTT----CAATTATCGACTTCAAATAA-AA--AA--TG---AATTCG-AC---GT---AATGAAAAGTGG--TTCATTAAgattggttgatataatgaaa
gi|13 : gaAT--ATTTCG-AATAAGTCTG---A--TAT--TGTG-AATAAATGT-GAG-AT-TCAATTATCGAC----------TTCATTTG---AAATCG-G--A-CG--ta
gi|18 : gaaAT--TGTG-ATCG--TGTTCAC-ATTTCAGTTATCGACTTC--AAA--TTCATCTG----AA-CA-A--A-tgtgaaaaaaccgatttcattaagtcgat
gi|9 : TA--TGTTGAC-ATTTTATTTA-----------AA--TTTATCTGCCCAAA-TC-G--A-TG---A--A-AATTTATGTCGGAATT---GTGT-AGATTA-------TTGTGAA-TA---TG-TAACAATTT----CAATCATCGATCTAAAAT-TAAA--GT--TC---CAATCA-ACACAAT---A--AAAAACCGATTTTCATGAAtcgaccaaaa
gi|17 : atTCAGTTATTGACTTC--ATA--TTTATCGG---AA--CA-A--A-TG--GACTAAAAT--ATGTCG-ATTTC--GT
gi|6 : --CA--A-AAT--ATGTCG-AATTACCATG--A---TA-------T--TGAG-AATATGT-TGACA-TTT----CAttgaacaa
gi|13 : aggtcattctgataagaaatcgtacagttaatataaaagtgatacatacacgacaatatgttctctttaattcatgaaggtgtgatttttttctcgttgtattacaaaaacttggctttctttgaataagtcatcAAT--ATTTCG-AATAA--GTCTGA---TA-------TTGTGAATAA---ATGTGAGA-TT-----CAATTATCGACTTCA----T------T--TG---AAATCGGAC---GTGTGA--AAAAACCGA-TTTCATTAAGTC
gi|14 : gaTCG-AATTA--ATGTGA---TACGGTTATT-GTGAATAA---GG-GGACA-TTT----CAATTATCGATGTAAAAT-C-AAACGTAATG---AAAgat
gi|18 : ---GT-TCACA-TTT----CAGTTATCGACTTCAAAT-T-CA--TC--TGAACAAATCG-AC-----------CAAAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TACCAGAACGATCTAATGAAAAGCGACTTTATCAAGTTGCCTACCTGATTTATGAAAAGATGTCGT
Unaligned ( gi|19 ): AACAAATCCCAGCATTCATATGAAAGGTATATAGACTCGACAATGTGTTCC
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 11 1 33333333333333333333333333 11111 44444 6666666666 33333333 11 111 1111 111 222222 444444 222222222 222
lowQualScore : 88 7 3 00000000000000000000000000 44 66666 66666 1 9 0 4444444444 77 22 66 00000000 33 5 5 555 66 3 0000 4 222 4 4 55 1 0 2 1 1 666666 4 66 444444 4 4 66 4 4 4 888888888 8 4 4 9999 0 000 1 3 3 55 4 0
lowQualScore : .. . . .......................... .. ..... ..... . . . .......... .. .. .. ........ .. . . ... .. . .... . ... . . .. . . . . . ...... . .. ...... . . .. . . . ......... . . . .... . ... . . . .. . .
lowQualScore : 33 3 3 77777777777777777777777777 22 77777 55555 1 5 5 5555555555 77 00 11 11111111 66 7 7 999 99 4 6666 4 222 4 4 55 6 4 9 9 9 111111 4 11 222222 0 0 11 0 0 0 888888888 9 4 4 4444 1 444 9 6 6 55 0 3
consensus : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G--CGTC-TT-TG-T--------CGCACC-----GTTAATAT--A--AAAGTGATACATACTCGACAA--TG---A--TGTTCTCTTT-NATTCAACAAG-GCGAGA--G----TTTTT--CTCG-TTGTAT-TACAAAA-A-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCTG----AACA-A--ATCGAC-CA-A-AAT--ATGTCG-AATTAGTGT-GA-T-A-------T-GTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATCG-ACGTAAT-GAAAA--CCGA-TTTCATTAAGTC
Reference ( family-3436 ) : CGACTTA--ATGAAATCGGTTTTC-ATTA------CGTC----------------CGNACC-----ATTAATAT--ATAAAAGTGATACATACTCGACAA--TGAATA--TGTTCTCTTT-NATTCANNAAG-GCGAG---G----TTTTT--CTCG-TTGTAT-TACAAAA-A-TTGGCTTTATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCTG---AAACA-A--A-CG---CA-A-AAT--ATGTCG-AATTAGTGT-GA-T-A-------T-GTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATCG-ACGTAAT-GAAAA--CCGA-TTTCATTAAGTC
gi|1 : CGACTTC--ATAAAATCGGTTT-C-ATTATATG--CGTCGTTGTGATAACAAAT-CGCACC-----ATTAATAT--A--AAAGTGATATA-----------------A--TGTTCTCTTT-GATTCAAGTAG-GCGAGAATG----TTTTT--CTCG-TTGTAT-TACAAAATC-CTGGCTTCATTTGAAGAAATCGTT----CAAA-ATATCTCA---AAT-TA-ATGTGATAT--TGTTAGTATGTTGACATTTCAGGTGTTTAA-TAAGATTTTTTCA---TAATA-A--ATCGTC-CA-A-AAT--ATGTCT-AAGAAATGT-GA-T-AT------T-GTGAATAAGT-TGAC-ATTT----GAATTA---------------AAGTTGAAAACG-ATGTAAT-GAAAA--CAGA-TTTCATTAAGTC
gi|10 : tgacgatacatgtatcttctcatAAGTGATAGAAACTCGACAA--TGCAC------TCTTTTT-CATTCAACAAA-GCAAGAA-G----TTTTT--CTCG-TTGTAT-TACAAAA-A-ATGG----------ACAAATCGTT----CAAC-ATATGTCGTACAATGTACATGT-ATTT--TAT-AAT-TG-TGACAT
gi|11 : CAATTTACCATGAAATCGGTTTTCCATTACAGGTACGTCATTCTGGTTCTGGTAACAAATCTCGGCATTAATAT--G--AATGTGATATA-ACTCGACGA--TG------TGTTCTC
gi|12 : acgatatgttctcattaaatcaaGATATATACTCGATAA--TG------TGTTCTCTTTGCATTCAACAAA-GCAAA---GTGGTTTTTT--CTCGTTTGTAT-AAAATAA-A-TT
gi|13 : tcgcacagaaaacagaagtgcatcgtac-A-AAT--ATTTCG-AATAAGTCT-GA-T-A-------TTGTGAATAAATGTGAG-ATT-----CAATTATCGACTTCA----T----TTGAAATCGGACGTG-T-GAAAAAACCGA-TTTCATTAAGTCtg
gi|14 : gTCG-AATTAATGT-GA-T-ACGGTTATT-GTGAATAAGG-GGAC-ATTT----CAATTATCGATGTAAAAT-C-AA-----------ACGTAAT-GAAAgat
gi|15 : CG-ATCTAAT-GAAAA--GCGA-CTTTATCAAGT
gi|16 : taccagaaCG-ACATAAT-GAAAA--GCGA-CTTTATCAAGTtgcctacctgatttatgaaaagatgtcgt
gi|17 : ctttttcattgatcaatacatgtaagcaTCAGTTATTGACTTCATATTTATC-G---GAACA-A--A-TGGACTA-A-AAT--ATGTCG-ATTTCGTTT-GA-ttctgacaa
gi|18 : AT--TGTGATCGTGTTCACATTTCAGTTATCGACTTCAAATTCATCTG----AACA-A--ATCGAC-CA-A-AAacaa
gi|19 : C-----ATTCATAT--G-AAAGGT-ATATAGACTCGACAA--TG------TGTTC
gi|2 : aacaaatcccagCGACTTA--ATGAAATCGGTTTTC-ATTA------CGTC----------------C-CATC-----ATTGATATTCATGAAAGTGATACATACTCGACCACCTGGACACCTGATCCCACC-CATTCAACAAA-GCGAG---G----TTTTT--CTCG-TT-TATATGCAAAA-A-TTGGCTTGATTTGAACAAATC--T----CAAC-ATATGTCGC--AAT-TA-GTGTAATAT--TGTAAATATGTTGACATATCAGTTATCGAC--CAAATTTATCAG---AAACA-A--A-CG---CA-ACAAT--ATGTCG-AATTAGTGT--A-T-A-------T-GTGAA-AAGT-TGAC-ATTT----CAATTACTGACTTCAAAT-T-AAGTTGAAATCG-ACGTA---CAAAA--CCGA-TTTCATTAAATCc
gi|3 : ATTCAGCAAC-GCGAGAT-G----TTTTT--ATCG-TTGCAA-TACAAAAAA-TTGGCTTGATTTGAACAAATCGTC----CAAT-ATATGTAG---CAT-TA-GTGTGATAT--TGTGAATCTGTTCACATTTCTGTTATCGACTTCAAACCTATCTG----TACA-A--ATCGAC-CA-A-AAT--GTGTCG-AATTAGTGT-GA-T-AT------T-GTGAATAAGT-CGAT-ATTTAAAACAGTTATCGATTTCAAAT-TAAAATTGAAATCA-ACGTAAG-GAAAA--TCGA-TTTCATGAAGTC
gi|4 : -TTGGCTTCATTTATACAAATCCTC----CAAA-TTATGTCG---AAA-TG-GTGTGATTT--TGTCAATATGTCGACATTTTATTTGTCGACTTCGAATTTATC-G---CAACATATTA-CT---CG-A-AAT--ATGTCG-AATTATTGT-GATT-T-------T-ATGAATAATT-TGAC-TTGT----CAATTATTGACTTTAAATAT-ATGTCGAAAACA-ACTTAAT-GAAAC--CCGA-TTTAATCAACTCggt
gi|5 : cAAATCGTCAGAACAAACATATATCG---CGT-TA-GTGTGATATATTGTGACTATGTTGACACTCCAATAATAGACTTCAAATTTATCT----AAACA-A--A-TGGA-CAGA-AAC--ATGTCG-AATTGG-----------------T-GTGAATAAGT-TGAT-CTTC----CAATAATTAACTTCAAAT-TAAAGTTGAAATCG-AAGTAAA-GAAAA--CCGA-TCCTAATAAGTCgcttagttgatttaatgaaaagatgttgtc
gi|6 : ----------------CGTACA-----GTTAATAT--A--AAAGTGATACATACACGACAA--T----A--TGTTCTCTTT-AATTCATGAAG-GTGTG---A----TTTTTTTCTCG-TTGTAT-TACAAAA-ACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAATATGTTGACATTTCAgattggttgatataatgaaa
gi|7 : aggtcattctgataagaaatA-ATTTGTCG---CAG-TA-GTGTGATAT--TGTGAATGTGTTGACAATTCACTTATGGATTTCAAATCTATCTG----AACA-A--ATCGAC-CA-A-AAT--ATGTCT-AATGAGTGT-GA-T-AT------T-GTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAATAA-AAAATGAATTCG-ACGTAAT-GAAAA--GTGG--TTCATTAA
gi|8 : g----------------CGTACA-----GTTAATAT--A--AAAGTGATACATACACGACAA--T----A--TGTTCTCTTT-AATTCATGAGGTGTGAT---G----TTTTTT-CTCG-TTGTAT-TACAAAA-ACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAA-ATGTTGACAta
gi|9 : taggtcatttctgataagaaatTATGTTGACATTTTA---------TTTAAATTTATCTGCCCAAATC-G--A-TG----A-A-AATTTATGTCGGAATT-GTGTAGA-TTA-------TTGTGAATATG--TAACAATTT----CAATCATCGATCTAAAAT-TAAAGTTCCAATCA-ACACAATAAAAAA--CCGATTTTCATGAA
Alignments
lowQualScore : 111 1 999999999999999999999999999999999999999999 1111 222222222 333333333 2222222 1 111 1111 111 3333333 222
lowQualScore : 444 3 0 111111111111111111111111111111111111111111 0 0 2222 000000000 2 6 0 999999999 66 3 0 5555555 1 5 5 555 44 3 0000 4 222 4 4 55 1 0 2 1 2 4 2 4 55 4 4 8 2222222 4 4 4 9999 0 000 1 4 0 4 66 4
lowQualScore : ... . . .......................................... . . .... ......... . . . ......... .. . . ....... . . . ... .. . .... . ... . . .. . . . . . . . . .. . . . ....... . . . .... . ... . . . . .. .
lowQualScore : 555 2 0 000000000000000000000000000000000000000000 7 7 1111 000000000 2 4 5 444444444 77 9 4 1111111 4 7 7 999 33 4 6666 4 222 4 4 55 6 4 9 9 1 4 0 0 55 0 0 0 2222222 4 4 4 4444 1 444 9 0 8 0 11 4
consensus : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTC--------NTTG--------T----------CGCACCGTTAATAT----GAAAGTG---------ATACATACTCGACAAT---GA----TGTTCTCTTTN-ATTCAACAAGGCGA---GA--GTTTTT-CTCG-TTGTAT-TACAAAA-A-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNGAA-CAAATCGACCAA-AA--TATGTC-GAATTAGTGT-GA-TAT------T-GTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATCG-ACGTAAT-GAAAA--CCGA-TTTCATTAAGTC
Reference ( family-3436 ) : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTC--------TTTG--------T----------CGCACCGTTAATAT----AAAAGTG---------ATACATACTCGACAAT---GA----TGTTCTCTTTN-ATTCAACAAGGCGA---GA--GTTTTT-CTCG-TTGTAT-TACAAAA-A-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCTGAA-CAAATCGACCAA-AA--TATGTC-GAATTAGTGT-GA-TA-------T-GTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATCG-ACGTAAT-GAAAA--CCGA-TTTCATTAAGTC
gi|1 : CGACTTC--ATAAAATCGGTTT-C-ATTATATG---CGTC--------GTTG--------TGATAACAAATCGCACCATTAATAT----AAAAGTG---------AT------------AT---AA----TGTTCTCTTTG-ATTCAAGTAGGCGA---GAATGTTTTT-CTCG-TTGTAT-TACAAAATC-CTGGCTTCATTTGAAGAAATCGTT----CAAA-ATATCTCA---AAT-TA-ATGTGATAT--TGTTAGTATGTTGACATTTCAGGTGTTTAATAAGATTTTTTCATAA-TAAATCGTCCAA-AA--TATGTC-TAAGAAATGT-GA-TAT------T-GTGAATAAGT-TGAC-ATTT----GAATTA---------------AAGTTGAAAACG-ATGTAAT-GAAAA--CAGA-TTTCATTAAGTC
gi|10 : tgacgatacatgtatcttctcatAAGTG---------ATAGAAACTCGACAAT---G-----CACTCTTTTTC-ATTCAACAAAGCAA---GAA-GTTTTT-CTCG-TTGTAT-TACAAAA-A-ATGG----------ACAAATCGTT----CAAC-ATATGTCGTACAATGTACATGT-ATTT--TAT-AAT-TG-TGACAT
gi|11 : CAATTTACCATGAAATCGGTTTTCCATTACA-GGTACGTCATTCTGGTTCTGGTAACAAAT----------CTCGGCATTAATAT----GAATGTG---------ATATA-ACTCGACGAT---G-----TGTTCTC
gi|12 : acgatatgttctcattaaatcaa--------T----------CGCACAG--AAAAC----AGAAGTGCATCGTACGATATATACTCGATAAT---G-----TGTTCTCTTTGCATTCAACAAAGCAAAGTGG--TTTTTT-CTCGTTTGTAT-AAAATAA-A-TT
gi|13 : A-AA--TATTTC-GAATAAGTCT-GA-TA-------TTGTGAATAAATGTGAG-ATT-----CAATTATCGACTTCA----T----TTGAAATCGGACGTG-T-GAAAAAACCGA-TTTCATTAAGTCtg
gi|14 : gTC-GAATTAATGT-GA-TACGGTTATT-GTGAATAAGG-GGAC-ATTT----CAATTATCGATGTAAAAT-C-AA-----------ACGTAAT-GAAAgat
gi|15 : CAACTTG--ATAAAGTCGCTTTTC-ATTAGA-T---CGTT--------CTGG--------T----------
gi|16 : tCG-ACATAAT-GAAAA--GCGA-CTTTATCAAGTcctacctgatttatgaaaagatgtcgt
gi|17 : ctttttcattgatcaatacatgtaagcaTCAGTTATTGACTTCATATTTATCGGAA-CAAATGGACTAA-AA--TATGTC-GATTTCGTTT-GA-ttctgacaa
gi|18 : AT--TGTGATCGTGTTCACATTTCAGTTATCGACTTCAAATTCATCTGAA-CAAATCGACCAA-AA--acaa
gi|19 : --------T----------CCCAGCATTCATAT----GAAAGGT---------ATATAGACTCGACAAT---G-----TGTTC
gi|2 : aacaaaCGACTTA--ATGAAATCGGTTTTC-ATTAC---------------------G--------T----------CCCATCATTGATATTCATGAAAGTG---------ATACATACTCGACCACCTGGACACCTGATCCCACCC-ATTCAACAAAGCGA---G---GTTTTT-CTCG-TT-TATATGCAAAA-A-TTGGCTTGATTTGAACAAATC--T----CAAC-ATATGTCGC--AAT-TA-GTGTAATAT--TGTAAATATGTTGACATATCAGTTATCGAC--CAAATTTATCAGAAACAAA-CG--CAACAA--TATGTC-GAATTAGTGT--A-TA-------T-GTGAA-AAGT-TGAC-ATTT----CAATTACTGACTTCAAAT-T-AAGTTGAAATCG-ACGTA---CAAAA--CCGA-TTTCATTAAATCc
gi|3 : -ATTCAGCAACGCGA---GAT-GTTTTT-ATCG-TTGCAA-TACAAAAAA-TTGGCTTGATTTGAACAAATCGTC----CAAT-ATATGTAG---CAT-TA-GTGTGATAT--TGTGAATCTGTTCACATTTCTGTTATCGACTTCAAACCTATCTGTA-CAAATCGACCAA-AA--TGTGTC-GAATTAGTGT-GA-TAT------T-GTGAATAAGT-CGAT-ATTTAAAACAGTTATCGATTTCAAAT-TAAAATTGAAATCA-ACGTAAG-GAAAA--TCGA-TTTCATGAAGTC
gi|4 : -TTGGCTTCATTTATACAAATCCTC----CAAA-TTATGTCG---AAA-TG-GTGTGATTT--TGTCAATATGTCGACATTTTATTTGTCGACTTCGAATTTATCGCAA-CATATTACTCGA-AA--TATGTC-GAATTATTGT-GATTT-------T-ATGAATAATT-TGAC-TTGT----CAATTATTGACTTTAAATAT-ATGTCGAAAACA-ACTTAAT-GAAAC--CCGA-TTTAATCAACTCggt
gi|5 : cAAATCGTCAGAACAAACATATATCG---CGT-TA-GTGTGATATATTGTGACTATGTTGACACTCCAATAATAGACTTCAAATTTATCTAAA-CAAATGGACAGA-AA--CATGTC-GAATTGG----------------T-GTGAATAAGT-TGAT-CTTC----CAATAATTAACTTCAAAT-TAAAGTTGAAATCG-AAGTAAA-GAAAA--CCGA-TCCTAATAAGTCgcttagttgatttaatgaaaagatgttgtc
gi|6 : --------T----------CGTACAGTTAATAT----AAAAGTG---------ATACATACACGACAAT----A----TGTTCTCTTTA-ATTCATGAAGGTGT---GA--TTTTTTTCTCG-TTGTAT-TACAAAA-ACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAATATGTTGACATTTCAgattggttgatataatgaaa
gi|7 : aggtcattctgataagaaaA-ATTTGTCG---CAG-TA-GTGTGATAT--TGTGAATGTGTTGACAATTCACTTATGGATTTCAAATCTATCTGAA-CAAATCGACCAA-AA--TATGTC-TAATGAGTGT-GA-TAT------T-GTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAATAA-AAAATGAATTCG-ACGTAAT-GAAAA--GTGG--TTCATTAA
gi|8 : g--------T----------CGTACAGTTAATAT----AAAAGTG---------ATACATACACGACAAT----A----TGTTCTCTTTA-ATTCA-TGAGGTGT---GAT-GTTTTTTCTCG-TTGTAT-TACAAAA-ACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAA-ATGTTGACAta
gi|9 : taggtcatttctgataagaaaTATGTTGACATTTTA---------TTTAAATTTATCTGCC-CAAATCGATGAA-AATTTATGTCGGAATT-GTGTAGATTAT------T-GTGAATATG--TAACAATTT----CAATCATCGATCTAAAAT-TAAAGTTCCAATCA-ACACAATAAAAAA--CCGATTTTCATGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 111 1 000000000000000000000000000000000000000000 1111 333333333 2222222 1 111 1111 111 11111111 222
lowQualScore : 444 3 0 444444444444444444444444444444444444444444 2 1 0 4444 2 6 0 999999999 66 3 0 5555555 1 5 5 555 44 3 0000 4 222 4 4 55 1 0 2 1 1 4 2 4 66 4 4 33333333 4 4 9999 0 555 1 4 4 55 4
lowQualScore : ... . . .......................................... . . . .... . . . ......... .. . . ....... . . . ... .. . .... . ... . . .. . . . . . . . . .. . . ........ . . .... . ... . . . .. .
lowQualScore : 555 2 0 000000000000000000000000000000000000000000 5 0 7 2222 2 4 5 444444444 77 9 4 1111111 4 7 7 999 33 4 6666 4 222 4 4 55 6 4 9 9 0 4 0 0 11 0 0 88888888 4 4 4444 1 999 9 0 0 55 4
consensus : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTCGTT----------------GT----------CNCACCGTTAATAT----GAAAGTGATACATACTCGACAAT---GA----TGTTCTCTTTN-ATTCAACAAGGCGA---GA--GTTTTT-CTCG-TTGTAT-TACAAAA-A-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNGAA-CAAATCGACCAA-AAT--ATGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATC-GACGTAAT-G--AAAACCGA-TTTCATTAAGTC
Reference ( family-3436 ) : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTCNTT----------------GT----------CGCACCGTTAATAT----GAAAGTGATACATACTCGACAAT---GA----TGTTCTCTTTN-ATTCAACAAGGCGA---GA--GTTTTT-CTCG-TTGTAT-TACAAAA-A-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNGAA-CAAATCGACCAA-AAT--ATGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATC-GACGTAAT-G--AAAACCGA-TTTCATTAAGTC
gi|1 : CGACTTC--ATAAAATCGGTTT-C-ATTATATG---CGTCGTT----------------GTGATAACAAATCGCACCATTAATAT----AAAAGTGAT------------AT---AA----TGTTCTCTTTG-ATTCAAGTAGGCGA---GAATGTTTTT-CTCG-TTGTAT-TACAAAATC-CTGGCTTCATTTGAAGAAATCGTT----CAAA-ATATCTCA---AAT-TA-ATGTGATAT--TGTTAGTATGTTGACATTTCAGGTGTTTAATAAGATTTTTTCATAA-TAAATCGTCCAA-AAT--ATGTCT-AAGAAATGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----GAATTA---------------AAGTTGAAAAC-GATGTAAT-G--AAAACAGA-TTTCATTAAGTC
gi|10 : tgacgatacatgtatcttctcatAAGTGATAGAAACTCGACAAT---G-----CACTCTTTTTC-ATTCAACAAAGCAA---GAA-GTTTTT-CTCG-TTGTAT-TACAAAA-A-ATGG----------ACAAATCGTT----CAAC-ATATGTCGTACAATGTACATGT-ATTT--TAT-AAT-TG-TGACAT
gi|11 : CAATTTACCATGAAATCGGTTTTCCATTACA-GGTACGTCATTCTGGTTCTGGTAACAAAT----------CTCGGCATTAATAT----GAATGTGATATA-ACTCGACGAT---G-----TGTTCTC
gi|12 : acgatatgttctcattaaatcaaGATATATACTCGATAAT---G-----TGTTCTCTTTGCATTCAACAAAGCAAAGTGG--TTTTTT-CTCGTTTGTAT-AAAATAA-A-TT
gi|13 : tcgcacagaaaacagaagtgcatcgtacA-AAT--ATTTCG-AATAAGTCT-GAT-A------TTGTGAATAAATGTGAG-A-TT----CAATTATCGACTTC--AT------TTGAAATCGGACGT-GT-GAAAAAACCGA-TTTCATTAAGTCtg
gi|14 : gTCG-AATTAATGT-GAT-ACGGTTATTGTGAATAAGG-GGAC-ATTT----CAATTATCGATGTAAAAT-C-AA-----------ACGTAAT-G--AAAgat
gi|15 : CAACTTG--ATAAAGTCGCTTTTC-ATTAGA-T---CGTTCTG----------------GT----------
gi|16 : tC-GACATAAT-G--AAAAGCGA-CTTTATCAAGTcctacctgatttatgaaaagatgtcgt
gi|17 : ctttttcattgatcaatacatgtaagcaTCAGTTATTGACTTCATATTTATCGGAA-CAAATGGACTAA-AAT--ATGTCG-ATTTCGTTT-GAttctgacaa
gi|18 : AT--TGTGATCGTGTTCACATTTCAGTTATCGACTTCAAATTCATCTGAA-CAAATCGACCAA-AAacaa
gi|19 : T----------CCCAGCATTCATAT----GAAAGGTATATAGACTCGACAAT---G-----TGTTC
gi|2 : aacaaaCGACTTA--ATGAAATCGGTTTTC-ATTAC-----------------------------GT----------CCCATCATTGATATTCATGAAAGTGATACATACTCGACCACCTGGACACCTGATCCCACCC-ATTCAACAAAGCGA---G---GTTTTT-CTCG-TT-TATATGCAAAA-A-TTGGCTTGATTTGAACAAATC--T----CAAC-ATATGTCGC--AAT-TA-GTGTAATAT--TGTAAATATGTTGACATATCAGTTATCGAC--CAAATTTATCAGAAACAAA-CG--CAACAAT--ATGTCG-AATTAGTGT--AT-A------T-GTGAA-AAGT-TGAC-ATTT----CAATTACTGACTTCAAAT-T-AAGTTGAAATC-GACGTA---C--AAAACCGA-TTTCATTAAATCc
gi|3 : -ATTCAGCAACGCGA---GAT-GTTTTT-ATCG-TTGCAA-TACAAAAAA-TTGGCTTGATTTGAACAAATCGTC----CAAT-ATATGTAG---CAT-TA-GTGTGATAT--TGTGAATCTGTTCACATTTCTGTTATCGACTTCAAACCTATCTGTA-CAAATCGACCAA-AAT--GTGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-CGAT-ATTTAAAACAGTTATCGATTTCAAAT-TAAAATTGAAATC-AACGTAAG-G--AAAATCGA-TTTCATGAAGTC
gi|4 : -TTGGCTTCATTTATACAAATCCTC----CAAA-TTATGTCG---AAA-TG-GTGTGATTT--TGTCAATATGTCGACATTTTATTTGTCGACTTCGAATTTATCGCAA-CATATTACTCGA-AAT--ATGTCG-AATTATTGT-GAT-T------TTATGAATAATT-TGAC-TTGT----CAATTATTGACTTTAAATAT-ATGTCGAAAAC-AACTTAAT-G--AAACCCGA-TTTAATCAACTCggt
gi|5 : cAAATCGTCAGAACAAACATATATCG---CGT-TA-GTGTGATATATTGTGACTATGTTGACACTCCAATAATAGACTTCAAATTTATCTAAA-CAAATGGACAGA-AAC--ATGTCG-AATTGG----------------TGTGAATAAGT-TGAT-CTTC----CAATAATTAACTTCAAAT-TAAAGTTGAAATC-GAAGTAAA-G--AAAACCGA-TCCTAATAAGTCgcttagttgatttaatgaaaagatgttgtc
gi|6 : T----------CGTACAGTTAATAT----AAAAGTGATACATACACGACAAT----A----TGTTCTCTTTA-ATTCATGAAGGTGT---GA--TTTTTTTCTCG-TTGTAT-TACAAAA-ACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAATATGTTGACATTTCAgattggttgatataatgaaa
gi|7 : aggtcattctgataagaaaA-ATTTGTCG---CAG-TA-GTGTGATAT--TGTGAATGTGTTGACAATTCACTTATGGATTTCAAATCTATCTGAA-CAAATCGACCAA-AAT--ATGTCT-AATGAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAATAA-AAAATGAATTC-GACGTAAT-G--AAAAGTGG--TTCATTAA
gi|8 : gT----------CGTACAGTTAATAT----AAAAGTGATACATACACGACAAT----A----TGTTCTCTTTA-ATTCA-TGAGGTGT---GAT-GTTTTTTCTCG-TTGTAT-TACAAAA-ACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAA-ATGTTGACAta
gi|9 : taggtcatttctgataagaaaTATGTTGACATTTTA---------TTTAAATTTATCTGCC-CAAATCGATGAA-AATTTATGTCGGAATT-GTGTAGATTA------TTGTGAATATG--TAACAATTT----CAATCATCGATCTAAAAT-TAAAGTTCCAATC-AACACAATAA--AAAACCGATTTTCATGAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 111 1 222222222222222222222222222222222222222222 1111 333333333 2222222 1 111 1111 111 11111111 222
lowQualScore : 444 3 0 666666666666666666666666666666666666666666 1 1 0 4444 2 6 0 999999999 66 3 0 5555555 1 5 5 555 44 3 0000 4 222 4 4 55 1 0 2 1 1 4 2 4 66 4 4 33333333 4 4 9999 0 555 1 4 4 55 4
lowQualScore : ... . . .......................................... . . . .... . . . ......... .. . . ....... . . . ... .. . .... . ... . . .. . . . . . . . . .. . . ........ . . .... . ... . . . .. .
lowQualScore : 555 2 0 888888888888888888888888888888888888888888 0 0 7 2222 2 4 5 444444444 77 9 4 1111111 4 7 7 999 33 4 6666 4 222 4 4 55 6 4 9 9 0 4 0 0 11 0 0 88888888 4 4 4444 1 999 9 0 0 55 4
consensus : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTCGTT----------------GT----------CNCACCGTTAATAT----GAAAGTGATACATACTCGACAAT---GA----TGTTCTCTTTN-ATTCAACAAGGCGA---GA--GTTTTT-CTCG-TTGTAT-TACAAAA-A-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNGAA-CAAATCGACCAA-AAT--ATGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATC-GACGTAAT-G--AAAACCGA-TTTCATTAAGTC
Reference ( family-3436 ) : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTCGTT----------------GT----------CNCACCGTTAATAT----GAAAGTGATACATACTCGACAAT---GA----TGTTCTCTTTN-ATTCAACAAGGCGA---GA--GTTTTT-CTCG-TTGTAT-TACAAAA-A-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNGAA-CAAATCGACCAA-AAT--ATGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATC-GACGTAAT-G--AAAACCGA-TTTCATTAAGTC
gi|1 : CGACTTC--ATAAAATCGGTTT-C-ATTATATG---CGTCGTT----------------GTGATAACAAATCGCACCATTAATAT----AAAAGTGAT------------AT---AA----TGTTCTCTTTG-ATTCAAGTAGGCGA---GAATGTTTTT-CTCG-TTGTAT-TACAAAATC-CTGGCTTCATTTGAAGAAATCGTT----CAAA-ATATCTCA---AAT-TA-ATGTGATAT--TGTTAGTATGTTGACATTTCAGGTGTTTAATAAGATTTTTTCATAA-TAAATCGTCCAA-AAT--ATGTCT-AAGAAATGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----GAATTA---------------AAGTTGAAAAC-GATGTAAT-G--AAAACAGA-TTTCATTAAGTC
gi|10 : tgacgatacatgtatcttctcatAAGTGATAGAAACTCGACAAT---G-----CACTCTTTTTC-ATTCAACAAAGCAA---GAA-GTTTTT-CTCG-TTGTAT-TACAAAA-A-ATGG----------ACAAATCGTT----CAAC-ATATGTCGTACAATGTACATGT-ATTT--TAT-AAT-TG-TGACAT
gi|11 : CAATTTACCATGAAATCGGTTTTCCATTACA-GGTACGTCATTCTGGTTCTGGTAACAAAT----------CTCGGCATTAATAT----GAATGTGATATA-ACTCGACGAT---G-----TGTTCTC
gi|12 : acgatatgttctcattaaatcaaGATATATACTCGATAAT---G-----TGTTCTCTTTGCATTCAACAAAGCAAAGTGG--TTTTTT-CTCGTTTGTAT-AAAATAA-A-TT
gi|13 : tcgcacagaaaacagaagtgcatcgtacA-AAT--ATTTCG-AATAAGTCT-GAT-A------TTGTGAATAAATGTGAG-A-TT----CAATTATCGACTTC--AT------TTGAAATCGGACGT-GT-GAAAAAACCGA-TTTCATTAAGTCtg
gi|14 : gTCG-AATTAATGT-GAT-ACGGTTATTGTGAATAAGG-GGAC-ATTT----CAATTATCGATGTAAAAT-C-AA-----------ACGTAAT-G--AAAgat
gi|15 : CAACTTG--ATAAAGTCGCTTTTC-ATTAGA-T---CGT
gi|16 : taccagaC-GACATAAT-G--AAAAGCGA-CTTTATCAAGTcctacctgatttatgaaaagatgtcgt
gi|17 : ctttttcattgatcaatacatgtaagcaTCAGTTATTGACTTCATATTTATCGGAA-CAAATGGACTAA-AAT--ATGTCG-ATTTCGTTT-GAttctgacaa
gi|18 : AT--TGTGATCGTGTTCACATTTCAGTTATCGACTTCAAATTCATCTGAA-CAAATCGACCAA-AAacaa
gi|19 : T----------CCCAGCATTCATAT----GAAAGGTATATAGACTCGACAAT---G-----TGTTC
gi|2 : aacaaaCGACTTA--ATGAAATCGGTTTTC-ATTAC-----------------------------GT----------CCCATCATTGATATTCATGAAAGTGATACATACTCGACCACCTGGACACCTGATCCCACCC-ATTCAACAAAGCGA---G---GTTTTT-CTCG-TT-TATATGCAAAA-A-TTGGCTTGATTTGAACAAATC--T----CAAC-ATATGTCGC--AAT-TA-GTGTAATAT--TGTAAATATGTTGACATATCAGTTATCGAC--CAAATTTATCAGAAACAAA-CG--CAACAAT--ATGTCG-AATTAGTGT--AT-A------T-GTGAA-AAGT-TGAC-ATTT----CAATTACTGACTTCAAAT-T-AAGTTGAAATC-GACGTA---C--AAAACCGA-TTTCATTAAATCc
gi|3 : -ATTCAGCAACGCGA---GAT-GTTTTT-ATCG-TTGCAA-TACAAAAAA-TTGGCTTGATTTGAACAAATCGTC----CAAT-ATATGTAG---CAT-TA-GTGTGATAT--TGTGAATCTGTTCACATTTCTGTTATCGACTTCAAACCTATCTGTA-CAAATCGACCAA-AAT--GTGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-CGAT-ATTTAAAACAGTTATCGATTTCAAAT-TAAAATTGAAATC-AACGTAAG-G--AAAATCGA-TTTCATGAAGTC
gi|4 : -TTGGCTTCATTTATACAAATCCTC----CAAA-TTATGTCG---AAA-TG-GTGTGATTT--TGTCAATATGTCGACATTTTATTTGTCGACTTCGAATTTATCGCAA-CATATTACTCGA-AAT--ATGTCG-AATTATTGT-GAT-T------TTATGAATAATT-TGAC-TTGT----CAATTATTGACTTTAAATAT-ATGTCGAAAAC-AACTTAAT-G--AAACCCGA-TTTAATCAACTCggt
gi|5 : cAAATCGTCAGAACAAACATATATCG---CGT-TA-GTGTGATATATTGTGACTATGTTGACACTCCAATAATAGACTTCAAATTTATCTAAA-CAAATGGACAGA-AAC--ATGTCG-AATTGG----------------TGTGAATAAGT-TGAT-CTTC----CAATAATTAACTTCAAAT-TAAAGTTGAAATC-GAAGTAAA-G--AAAACCGA-TCCTAATAAGTCgcttagttgatttaatgaaaagatgttgtc
gi|6 : T----------CGTACAGTTAATAT----AAAAGTGATACATACACGACAAT----A----TGTTCTCTTTA-ATTCATGAAGGTGT---GA--TTTTTTTCTCG-TTGTAT-TACAAAA-ACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAATATGTTGACATTTCAgattggttgatataatgaaa
gi|7 : aggtcattctgataagaaaA-ATTTGTCG---CAG-TA-GTGTGATAT--TGTGAATGTGTTGACAATTCACTTATGGATTTCAAATCTATCTGAA-CAAATCGACCAA-AAT--ATGTCT-AATGAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAATAA-AAAATGAATTC-GACGTAAT-G--AAAAGTGG--TTCATTAA
gi|8 : gT----------CGTACAGTTAATAT----AAAAGTGATACATACACGACAAT----A----TGTTCTCTTTA-ATTCA-TGAGGTGT---GAT-GTTTTTTCTCG-TTGTAT-TACAAAA-ACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAA-ATGTTGACAta
gi|9 : taggtcatttctgataagaaaTATGTTGACATTTTA---------TTTAAATTTATCTGCC-CAAATCGATGAA-AATTTATGTCGGAATT-GTGTAGATTA------TTGTGAATATG--TAACAATTT----CAATCATCGATCTAAAAT-TAAAGTTCCAATC-AACACAATAA--AAAACCGATTTTCATGAA
blockSeqs : ACC T C CAGGTACGTCATTCTGGTTCTGGTAACAAAT T G TCAT G A CTGGACACC GC A AGTGG T T A AA GA G AGAA C TAC G C AT G G T G A A C TT G A ACGGTTA G A AAAA TA G G A AA T
blockSeqs : G T . CGT C G . T T G C A GAA T . . AC GA G . . C . . . A G C T . A . . . . TA . . . AT A . . . .
blockSeqs : A T . C T . T G G C A GAT . . . AC CA C . . . . . . G G C A . A . . . . A . . . TA G . . . .
blockSeqs : G C . T T G A G GAT . . . A TC G . . . . . . C G C T . C . . . . A . . . AA G . . . .
blockSeqs : G C . C T G A T GA . . . A TC A . . . . . . G T C G . A . . . . A . . . TA A . . . .
blockSeqs : C T A . G . . . A . A . . . . . . G A A T . A . . . . T . . . C G . . . .
blockSeqs : C . A . . . . . . . G C G T . A . . . . A . . . T . . . . .
blockSeqs : . . . . . G . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : G******** GAT**** AC* TA*
originalCons : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTCGTT----------------GT----------CNCACCGTTAATAT----GAAAGTGATACATACTCGACAAT---GA----TGTTCTCTTTN-ATTCAACAAGGCGA---GA--GTTTTT-CTCG-TTGTAT-TACAAAA-A-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNGAA-CAAATCGACCAA-AAT--ATGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAAT-T-AAGTTGAAATC-GACGTAAT-G--AAAACCGA-TTTCATTAAGTC
finalCons : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTCGTT----------------GT----------CNCACCGTTAATAT----GAAAGTGATACATACTCGACAATG--------TGTTCTCTTTN-ATTCAACAAGGCGAGAT----GTTTTT-CTCG-TTGTAT-TACAAAAAC-TTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNGAA-CAAATCGACCAA-AAT--ATGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAATTA-AAGTTGAAATC-GACGTAAT-G--AAAACCGA-TTTCATTAAGTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 111 1 222222222222222222222222222222222222222222 1111 111111 1111 111 11111111
lowQualScore : 444 3 0 666666666666666666666666666666666666666666 1 1 0 4444 1 9 0 66 444444 77 3 0 55 77 5 5 5 7 3 3 0000 4 222 4 4 55 1 0 2 1 1 4 2 4 66 4 4 33333333 4 4 9999 0 55 2 4 4 55 4
lowQualScore : ... . . .......................................... . . . .... . . . .. ...... .. . . .. .. . . . . . . .... . ... . . .. . . . . . . . . .. . . ........ . . .... . .. . . . .. .
lowQualScore : 555 2 0 888888888888888888888888888888888888888888 0 0 7 2222 1 5 5 99 444444 77 9 4 99 99 7 7 7 6 0 4 6666 4 222 4 4 55 6 4 9 9 0 4 0 0 11 0 0 88888888 4 4 4444 1 99 0 0 0 55 4
consensus : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTCGTT----------------GT----------CNCACCGTTAATAT----GAAAGTGATACATACTCGACAA--TG------TGTTCTCTTT-NATTCAACAAGGCGAGA-TG--TTTTT-CTCG-TTGTAT-TACAAAAACTTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNG-AACAAATCGACCAA-AAT--ATGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAATTAAAGTTGAAATC-GACGTAAT-G--AAAACCGA-TTTCATTAAGTC
Reference ( family-3436 ) : CGACTTA--ATGAAATCGGTTTTC-ATTACA-G---CGTCGTT----------------GT----------CNCACCGTTAATAT----GAAAGTGATACATACTCGACAA--TG------TGTTCTCTTT-NATTCAACAAGGCGAGA-TG--TTTTT-CTCG-TTGTAT-TACAAAAACTTGGCTTNATTTGAACAAATCGTC----CAAA-ATATGTCG---AAT-TA-GTGTGATAT--TGTGAATATGTTGACATTTCAGTTATCGACTTCAAATTTATCNG-AACAAATCGACCAA-AAT--ATGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAATTAAAGTTGAAATC-GACGTAAT-G--AAAACCGA-TTTCATTAAGTC
gi|1 : CGACTTC--ATAAAATCGGTTT-C-ATTATATG---CGTCGTT----------------GTGATAACAAATCGCACCATTAATAT----AAAAGTGATATA-------------A------TGTTCTCTTT-GATTCAAGTAGGCGAGAATG--TTTTT-CTCG-TTGTAT-TACAAAATCCTGGCTTCATTTGAAGAAATCGTT----CAAA-ATATCTCA---AAT-TA-ATGTGATAT--TGTTAGTATGTTGACATTTCAGGTGTTTAATAAGATTTTTTCAT-AATAAATCGTCCAA-AAT--ATGTCT-AAGAAATGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT------------------GAATTAAAGTTGAAAAC-GATGTAAT-G--AAAACAGA-TTTCATTAAGTC
gi|10 : tgacgatacatgtatcttctcatAAGTGATAGAAACTCGACAA--TG------CACTCTTTTT-CATTCAACAAAGCAAGA-AG--TTTTT-CTCG-TTGTAT-TACAAAAA---------AT--GGACAAATCGTT----CAAC-ATATGTCGTACAATGTACATGT-ATTT--TAT-AAT-TG-TGACAT
gi|11 : CAATTTACCATGAAATCGGTTTTCCATTACA-GGTACGTCATTCTGGTTCTGGTAACAAAT----------CTCGGCATTAATAT----GAATGTGATATA-ACTCGACGA--TG------TGTTCTC
gi|12 : acgatatgttctcattaaatcaaGATATATACTCGATAA--TG------TGTTCTCTTTGCATTCAACAAAGCAAAG-TGGTTTTTT-CTCGTTTGTAT-AAAATAAATTTG
gi|13 : tcgcacagaaaacagaagtgcatcgtacA-AAT--ATTTCG-AATAAGTCT-GAT-A------TTGTGAATAAATGTGAG-A-TT----CAATTATCGACTTC--AT-----TTGAAATCGGACGT-GT-GAAAAAACCGA-TTTCATTAAGTC
gi|14 : gTCG-AATTAATGT-GAT-ACGGTTATTGTGAATAAGG-GGAC-ATTT----CAATTATCGATGTAAAATCAA------------ACGTAAT-G--AAAgat
gi|15 : CAACTTG--ATAAAGTCGCTTTTC-ATTAGA-T---CGT
gi|16 : taccagaC-GACATAAT-G--AAAAGCGA-CTTTATCAAGTcctacctgatttatgaaaagatgtcgt
gi|17 : ctttttcattgatcaatacatgtaagcaTCAGTTATTGACTTCATATTTATCGG-AACAAATGGACTAA-AAT--ATGTCG-ATTTCGTTT-GAttctgacaa
gi|18 : AT--TGTGATCGTGTTCACATTTCAGTTATCGACTTCAAATTCATCTG-AACAAATCGACCAA-AAacaa
gi|19 : T----------CCCAGCATTCATAT----GAAAGGTATATAGACTCGACAA--TG------TGTTC
gi|2 : aacaaaCGACTTA--ATGAAATCGGTTTTC-ATTAC-----------------------------GT----------CCCATCATTGATATTCATGAAAGTGATACATACTCGACCACCTGGACACCTGATCCCACC-CATTCAACAAAGCGAG---G--TTTTT-CTCG-TT-TATATGCAAAAA-TTGGCTTGATTTGAACAAATC--T----CAAC-ATATGTCGC--AAT-TA-GTGTAATAT--TGTAAATATGTTGACATATCAGTTATCGAC--CAAATTTATCAGAAACAAA-CG--CAACAAT--ATGTCG-AATTAGTGT--AT-A-------TGTGAA-AAGT-TGAC-ATTT----CAATTACTGACTTCAAATT-AAGTTGAAATC-GACGTA---C--AAAACCGA-TTTCATTAAATCc
gi|3 : ATTCAGCAACGCGAGA-TG--TTTTT-ATCG-TTGCAA-TACAAAAAATTGGCTTGATTTGAACAAATCGTC----CAAT-ATATGTAG---CAT-TA-GTGTGATAT--TGTGAATCTGTTCACATTTCTGTTATCGACTTCAAACCTATCTG-TACAAATCGACCAA-AAT--GTGTCG-AATTAGTGT-GAT-A------TTGTGAATAAGT-CGAT-ATTTAAAACAGTTATCGATTTCAAATTAAAATTGAAATC-AACGTAAG-G--AAAATCGA-TTTCATGAAGTC
gi|4 : CTTGGCTTCATTTATACAAATCCTC----CAAA-TTATGTCG---AAA-TG-GTGTGATTT--TGTCAATATGTCGACATTTTATTTGTCGACTTCGAATTTATCGC-AACATATTACTCGA-AAT--ATGTCG-AATTATTGT-GAT-T------TTATGAATAATT-TGAC-TTGT----CAATTATTGACTTTAAATATATGTCGAAAAC-AACTTAAT-G--AAACCCGA-TTTAATCAACTCggt
gi|5 : AAATCGTCAGAACAAACATATATCG---CGT-TA-GTGTGATATATTGTGACTATGTTGACACTCCAATAATAGACTTCAAATTTATCTA-AACAAATGGACAGA-AAC--ATGTCG-AATTGG----------------TGTGAATAAGT-TGAT-CTTC----CAATAATTAACTTCAAATTAAAGTTGAAATC-GAAGTAAA-G--AAAACCGA-TCCTAATAAGTCgcttagttgatttaatgaaaagatgttgtc
gi|6 : T----------CGTACAGTTAATAT----AAAAGTGATACATACACGACAA--TA------TGTTCTCTTT-AATTCATGAAGGTGTGA-TT--TTTTT-CTCG-TTGTAT-TACAAAAACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAATATGTTGACATTTCAgattggttgatataatgaaa
gi|7 : aggtcattctgataagaaaA-ATTTGTCG---CAG-TA-GTGTGATAT--TGTGAATGTGTTGACAATTCACTTATGGATTTCAAATCTATCTG-AACAAATCGACCAA-AAT--ATGTCT-AATGAGTGT-GAT-A------TTGTGAATAAGT-TGAC-ATTT----CAATTATCGACTTCAAATAAAAAATGAATTC-GACGTAAT-G--AAAAGTGG--TTCATTAA
gi|8 : gT----------CGTACAGTTAATAT----AAAAGTGATACATACACGACAA--TA------TGTTCTCTTT-AATTCA-TGAGGTGTGA-TG--TTTTTTCTCG-TTGTAT-TACAAAAACTTGGCTTTCTTTGAATAAGTCATC----CAAA-ATATGTCG---AAT-TA-CCATGATAT--TGAGAA-ATGTTGACAta
gi|9 : taggtcatttctgataagaaaTATGTTGACATTTTA---------TTTAAATTTATCTG-CCCAAATCGATGAA-AATTTATGTCGGAATT-GTGTAGATTA------TTGTGAATATG--TAACAATTT----CAATCATCGATCTAAAATTAAAGTTCCAATC-AACACAATAA--AAAACCGATTTTCATGAA