lowQualScore : 11 22 11 222 11 1 11 11 1 222 33 2 11111 6666666666666666666666 1 11 22222 11111111 333333333333 2 3333 33 33 44444444 2 11 2222 1 22 1 111 33333 1 4444444444444444444444 1111 555555 22222 44444444 2 111 11
lowQualScore : 2 00 44 11 777 33 0 2 6 1 33 2 11 8 0 2 3 888 44 2 8 77777 0 1 0000000000000000000000 0 4 7 00 4 77777 777 777 66666666 8888 777777777777 55 4 4 0000 3 00 6 8888 33 777 1 4 2 11111111 99 99 7 0 66 2 66 1111 5 66 77 5 111 00000 3 1 1111111111111111111111 7777 1 555555 111 0 5 77777 3 2 88888888 3 777 44
lowQualScore : . .. .. .. ... .. . . . . .. . .. . . . . ... .. . . ..... . . ...................... . . . .. . ..... ... ... ........ .... ............ .. . . .... . .. . .... .. ... . . . ........ .. .. . . .. . .. .... . .. .. . ... ..... . . ...................... .... . ...... ... . . ..... . . ........ . ... ..
lowQualScore : 2 22 88 00 000 88 0 0 7 0 88 5 22 0 6 8 2 666 11 9 7 77777 4 4 1111111111111111111111 8 4 8 66 4 00000 888 888 11111111 5555 666666666666 55 1 0 2222 6 55 5 5555 11 000 1 4 5 00000000 22 22 5 7 99 0 44 9999 5 99 22 4 555 99999 2 9 1111111111111111111111 8888 0 888888 888 8 0 22222 0 5 33333333 7 777 00
consensus : TAGGGCTGTGC-GGTTTT-ATTGAGATATTGGT-GTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-CGTTTT-CGAGAATACCGGTTCNGGTTCAATATTTT--ACTTTTTCTGGAATTATCTTTCTTTTT--NAAAATGGAAA--TAGTGCATTCTAATTACCC-TGGTGAGGTACGAG-AAGG--C-AAAATCAATCATA---T---GAGA--------CCACATCCTAGTCAAAAAA----GA-----GA-----AA--GGAAAGGTACAGTT-AAGCA-AT-G-CAGT-TTGCATTTCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGTC-C---AGT--C--ATAT-GAAGAGACATCATGGCAACGTA--GTCATAAGGCCAAACGTCTTCC--AATCATTGAC--AATCNTTTCACCAAAAAG--TTACGACTAAAAATCAANCAACA---------T----GA--A---TTGAC--G-CCTGAATGA----TTTTTTTTTTTTTTTTTNCATGTCT-TATTTTGAATCAAAAANCATANTTTCA--------GTTTATATTTC-TTGTC-A-TTTAGATCTTTTTAATGATCTT
Reference ( gi|1 ) : TAGAGCTGTGC-GGTTTTTATTGCAATATTG-T-GTATTGC--AAT-ACTTCCTTCCACAATATGTA--TTGCAATA-TGTTTT-CAAGAATGCCGGTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTCTTTAT--AAAAATGGAAAGTTAATGCATTCTGATTACCCGTGGTGAGGTACGAG-A-GG--C-AAAATCATTCA-A---T---GAGA--------CCACATCCTAGTCAAAAAA----GA-----G------AA--GGAAAGGTACAGTTCAAGCA-A--A-CAGT-TTGCCTTTCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---C---AGT--C--ATATCGAGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTT-C--AATCATTGAC--AATCTTTTCACCAAAAAA--TTACGACTAAAAATCAAGCAACA---------T----GA--A---TTGAT--G-CCTAAATGATTTTTTTTTTTTTTTTTTTTTCCATGTCT-TATTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|2 : TAGAGCTGTGC-GGTTTTTATTGCAATATTG-T-GTATTGC--AAT-ACTTCCTTCCACAATATGTA--TTGCAATA-TGTTTT-CAAGAATGCCGGTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTCTTTAT--AAAAATGGAAAGTTAATGCATTCTGATTACCCGTGGTGAGGTACGAG-A-GG--C-AAAATCATTCA-A---T---GAGA--------CCACATCCTAGTCAAAAAA----GA-----G------AA--GGAAAGGTACAGTTCAAGCA-A--A-CAGT-TTGCCTTTCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---C---AGT--C--ATATCGAGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTT-C--AATCATTGAC--AATCTTTTCACCAAAAAA--TTACGACTAAAAATCAAGCAACA---------T----GA--A---TTGAT--G-CCTAAATGATTTTTTTTTTTTTTTTTTTTTCCATGTCT-TATTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|3 : TAGGACTGTGCCGGTTT--ATTGAGATATTGGT-GCATTGCCAAATTATTTCGTTC-ACAATACGTAAATTGCAATAACGTTTTTCAAGAATACCGGTT-CGGGTCAATATTTC--ACTTTTTCTGGAGTT-TCTTTCTTTTTTTGAAAATGAAAA--TAG-GCAT-CTAATATCTCCTA-TG-GGTACGAG-A-GGAGCGAAAATCAAT-A-A---TATGGAGA--------C-ACATCC-AGT-AAAAAA----GA-----G------AAAAGGAAAAGTACAGTT-AAGCA-T--G-CAGCCTTGCATT-CTCTGCAAACAATG----TGTTA--AATCTCCGGACCGGCGATACATCGAATCTGTCCC---AGT--CCCATATGAAAGAGACATCATGACAATGTA--GTCATAGG--CAAACGTCTT-CCAAATCAT-GAC--AATGTTT-CACCCAAAAAGTTTACGACTA-----CAATGAATA---------TTGGTGA--ACA-TTGAACAA-CCTGAATA----TTTTTT--------TTTTGCATGTC--TATTTTGAATCGAAAAGCGTAGTTT
gi|7 : TAGGGCTGTGT-GGTTTT-ATTGAGGTATTGGT-GTATTGC--AAT-ATTTTCGTTCACAATACGTA--TTGCAATA-AGCTTT-TCAGAATACAGGTTCGGGTTCAATATTTT--ACTTTTTC-TGAAGT---------TAT--GATAAT----ATCTAG-GCAT-CTAAT-ACCT-TGATGAGATACGAG-AAGG--C-ACAATAAATAATA---T---GAGA--------CCACATCCTAGTCAAAAAA----GA-----GA-----AA--GGAAAGGTACA--TTAAGCA-AT-G-CAGT-TTGCA-TTCTCTGCAATGAATG----TGTTA--AA---CCGG-CTGGTGGAA
gi|16 : TAGGGCTGTGG-GGTTTT-ATTGAGACATTG-GAGTATTGC--AAT-ATTTTC
gi|10 : tgGTA--TTG-AATA-TATTTT-CG-GAATACTG----TG-TCCAA-ATATTTTATTTTTCT-GGAATTTACTTTCTTT-T--AAAAATGAA-----AATGGA-TCTAA-TACCC-TGGT--AGTACGAGAA-GG--C-AAAATCAATCA-A---T---TAAATTATGGACCCATACCTTAGTC-AAAAA----GA-----G------AA--AGgt
gi|9 : cTTTT-CA-GAATACCGATTCGGGTTTACTATTAT--ACTTTTTCTGGACTTATCTTTCTTTTT--AAAA-TGGAAA-----TGGGATCT-AGTGCCT-TAGTGAGGTACGAG-AAGG--C-AAAATAA---A-AATAT---GAGA--------CCACATCTTAGTCAAAAAT----GAG----G------AA--GGAAAGGTACAGTT-AAGAA-AT-A-CAGT-TTGC--------------AATG----TGTTG--AA---CAGG-CCGGTGTAACca
gi|15 : tGGTTCAATATTTT--ACTTTTTCTGGAATTATCTTTCTTT-T--TAAAATGGAAA--TG--GCA-TCTAA-TACCC
gi|5 : CAATATTTC--ACTTTTTCTGGAGTTATCTTTCTTTTT--TTGAATGAAAA--TG--GCAT-CTAAT-ATCC-TAGTGGGGTACGAG-AAGG--C-AAAATCAATAATA---T---GAGA--------CCACATCCTAGTCAAAAAA----GA-----GA-----AA--GGAAAAGTACAGTT-AAGCA-AT-G-CAGC-TTGCA-TTCTCTGCAACAAATG----TGTTA--AA---CCGG-CCGGCAGAACTTCGAATCTGTC-C---AGT--C--ATAT-GAAGAGACATCATGACAATGTA--GTCAT-AGGCCAAACGTCTTCC--AATCA-TGAC--AAT-GTTTCACC-AAAAG--TTACGACTA-----CAATCAATATTGTG----T----GAACA---TTGACA-A-CCTGAAT-ATTTATTTTTTtagt
gi|4 : GCAT-CTGAT-ACCC-TGGTGAGGTACGAG-AAGG--C-AAAATCATTCATA---T---GAGA--------CCACATCCTAGTCAAAAAA----GA-----GA-----AA--GGAAAGGTACAGTTC-AGCATA--A-CAGT-TTGCC-TTCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTATC-C---AGT--C--ATAT-GAGGAGACATCATGGCAACATA--GCCAT-AGGCCAAACGTCTT-CT-AATCA-TGAC--AATC-TTTCACC-AAAAA--TTACGACT-AAAATC-AGCAACA---------T----GA--A---TTGAT--G-CCTAAATGA----TTTTTTTTTTTTTTTTTCCATGTC--TATTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTC-TTGTC-ATTTTAGATC-TTTTAATGATCTTg
gi|13 : atgGCAT-CTAAT-ACCC-TAGTAAGGTAATAG-A-AGA-C-AAAATCAATAATA---T---GAGA--------TCACATCCTAGTCAAAAAA----GGAATTCA------AA--GGAAAGATAAAGTT-AAGCA-AT-G-TAGT-TTGCA-TTCTCTtttccagtttcaggaacactacaaaatac
gi|12 : gGTGAGGTACTA--------C-AATA-----CG-A---T---GAGC--------CCACATCCTAGTCAAAAAG----GG-----GAATTCAAA--GGAAAAGTAAAGTT-ATGCA-AT-G-CTGA-TTGCA-TTCTCTGCAACGAATG----TGTTA--AA---CCAG-CCGGCGGAACTTCG
gi|6 : aCACATCCTAGTAAAAAAAAAATGA-----GTTCA--AA--GGAAAGGTTAAGTT-AAGCA-A--TTCAGT-TTGCATT-CTCTGCAACAAATG----TGTTA--AA---CCGG-CCAGCAGAACTTC-------------------C--ATAT-GAAGAGACACCATGGCAACATA--GTCATA-GGCCAGACTTC---C--AATT-TTGAC--ACTGTTTT-ACCAAAAG---TTACGACTACAA-TCAA-CAACA---------TT---GA--AGACTTGAT--GTCCTGAAT-----------TTTTTTTT-----------C-TATTTTGAATCAAAAAGCATAATTTCAGTCTTTCTGTTTGTATTTC-TTGTCAA-TTTAGAT-TTTTGAAAGATTTT
gi|8 : AGTTAAGGCA-CGCA-CAGT-TTGCATT-CTCT-CA-TGAATGGTTTTGTTATTAA---CTGG-CCGGCAGAACTTTGAATCTG---TCCAAGTCCC--ATAT-GAAGAGA-ATC-TGGCGACATA--GTAATAGGG-CAAACGTCTT-CT-AATCATTGACCAGATC-TTTCACCAAAAAG--TTACGACT---AATCAGCCAACA---------T----
gi|17 : -CGGT-TTGC-TTTATCCTCAATGAATG----TGTTA--AA---CTtgtgtgaacattggacaacctgatttaatgctggatttatttttgaatcaaaaagc
gi|11 : taatcaatgAGACATCATGGCAACATT--GTCAT-AGGCCAGACGTCTTCC--AATTA-TGAC--AAT-GTTTCAC--AAAAG--TTACGACT-ACAATCAA-CAACATTGAAGACTT----GA--A---TTAAT--G-TCTGAATA-----TTTGTTGGGTTTTTTTTGCAT---TATATTTTGAATCAAAAA
gi|14 : CATCATGGCAACATATAGTCATA-GGCCAAATGTCTTCC--AATCA-TGAC--AAT-GTTTCACC-AAATG--TTACCACT-ACAATC-AGCATCA---------T----
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TGTAACACGTAGGTACAGGCCGGTGTAACGAC
Alignments
lowQualScore : 1 1 11 11 1 11 111 33333333333 22 11111111 1111 11 22 1111 11 1 11 1 22 22222 444444444 22 111 4444444444444 22222 33333333 2 111
lowQualScore : 6 0 0 8 11 6 11 8 4 6 0 6 1 1 1 33 3 0 66 111 11111111111 44 8 1 3 3 4 4 3 66666666 4 7777 7777 99999 6 2 44 3 77 44 7777 00 666 4 0 5555 5 55 1 5 2 66 22 99 8 66 77 4 4 4 77777 9 999999999 4 00 888 5 5 666 7777777777777 1 44444 5 1 1 66666666 0 111 55
lowQualScore : . . . . .. . .. . . . . . . . . .. . . .. ... ........... .. . . . . . . . ........ . .... .... ..... . . .. . .. .. .... .. ... . . .... . .. . . . .. .. .. . .. .. . . . ..... . ......... . .. ... . . ... ............. . ..... . . . ........ . ... ..
lowQualScore : 0 6 0 0 00 5 00 0 6 7 5 7 5 0 4 88 2 4 99 444 22222222222 44 0 4 6 6 4 4 9 33333333 0 7777 7777 11111 7 6 66 3 88 55 7777 00 444 0 4 3333 7 77 4 7 4 11 66 11 2 11 44 4 6 4 88888 7 444444444 4 66 888 0 0 000 5555555555555 0 00000 7 0 0 22222222 0 000 88
consensus : TAGGGCTGTGCGGTTTTTATTGAGATATTGGTGTATTG-CAA--TATTTCCTTCCACAATACGT--ATTGCAAT-ATG-TTTTCGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTC--TTTTTAAAAATGGAAA--TGG-GCATTCTAAT-TACCC-TGGTGAGGTACGAGAAG-GC-AAAATCAATAA-------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-AAGCAATGCA--G-TTTGCATT-TCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GTCATAAGGCCAAACGTCTTCC-AATCATTGAC--AATCGTTTCA-CCAAAAAG-TTACGACTAAAAATCAANCAACATTG------T-GAACA---TT-G-ATAG-CCTGAATGA----TTT-TTTTTTTTTTTTTNCATGTCT-TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
Reference ( family-3428 ) : TAGGGCTGTGCGGTTTT-ATTGAGATATTGGTGTATTG-CAA--TATTTCCTTCCACAATACGT--ATTGCAAT-ACG-TTTTCGAGAATACCG-GTTCNGGTTCAATATTTT--ACTTTTTCTGGAATTATCTTTC--TTTTTNAAAATGGAAA--TAGTGCATTCTAAT-TACCC-TGGTGAGGTACGAGAAG-GC-AAAATCAATCA-------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-AAGCAATGCA--G-TTTGCATT-TCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CC-AGT--CATAT-G-AAGAGACATCATGGCAACGTA--GTCATAAGGCCAAACGTCTTCC-AATCATTGAC--AATCNTTTCA-CCAAAAAG-TTACGACTAAAAATCAANCAACA---------T-GA--A---TT-G-AC-G-CCTGAATGA----TTTTTTTTTTTTTTTTTNCATGTCT-TA-TTTTGAATCAAAAANCATANTTTCA--------GTTTATATTTC-TTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|1 : TAGAGCTGTGCGGTTTTTATTGCAATATTG-TGTATTG-CAA--TACTTCCTTCCACAATATGT--ATTGCAAT-ATG-TTTTCAAGAATGCCG-GTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTC--TTTATAAAAATGGAAAGTTAATGCATTCTGAT-TACCCGTGGTGAGGTACGAGA-G-GC-AAAATCATTCA--------AT-GAGACCACATCCTAGTCAAAAAA----GAG----AA------GGAAAGGTACAGTTCAAGCAA-ACA--G-TTTGCCTT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---C-AGT--CATATCG-AGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTTC--AATCATTGAC--AATCTTTTCA-CCAAAAAA-TTACGACTAAAAATCAAGCAACA---------T-GA--A---TT-G-AT-G-CCTAAATGATTTTTTTTTTTTTTTTTTTTTCCATGTCT-TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|10 : CGT--ATTG-AAT-ATA-TTTTCG-GAATACTGTGTCCA-----AATATTTT--A-TTTTTCTGGAATTTACTTTC--TTTT-AAAAATGAAAA--TGG---AT-CTAAT--ACCC-TGGTA--GTACGAGAAG-GC-AAAATCAATCAATTAAATTAT-GGACCCATACCTTAGTC-AAAAA----GAG----AA-----AG
gi|11 : AGACATCATGGCAACATT--GTCAT-AGGCCAGACGTCTTCC-AATTA-TGAC--AAT-GTTTCA-C--AAAAG-TTACGACT-ACAATCAA-CAACATTGAAGACTT-GA--A---TT-A-AT-G-TCTGAAT-A----TTTGTTGGGTTTTTTTTGCAT---TATA-TTTTGAATCAAAAAca
gi|12 : AT-GAGCCCACATCCTAGTCAAAAAG----GGG----AATTCAAAGGAAAAGTAAAGTT-ATGCAATGCT--G-ATTGCATT--CTCTGCAACGAATG----TGTTA--AA---CCAG-CCGGCGGAACTTCG
gi|13 : agtgaggtactacaatacgGCAT-CTAAT--ACCC-TAGTAAGGTAATAGAAG-AC-AAAATCAATAA-------TAT-GAGATCACATCCTAGTCAAAAAA----GGAATTCAA-----AGGAAAGATAAAGTT-AAGCAATGTA--G-TTTGCA-T-TCTCT
gi|14 : gCATCATGGCAACATATAGTCATA-GGCCAAATGTCTTCC-AATCA-TGAC--AAT-GTTTCA-CC-AAATG-TTACCACTA-----CAATCAGCA---------T-
gi|15 : GGTTCAATATTTT--ACTTTTTCTGGAATTATCTTTC--TTTTT-AAAATGGAAA--TG--GCA-TCTAA--TACCC-TAGTcattgt
gi|16 : TAGGGCTGTGGGGTTTT-ATTGAGACATTGGAGTATTG-CAA--TATTTTC
gi|17 : tgT-AATCAATGCG--G-TTTGC-TT-TATCCTCAATGAATG----TGTTA--AA---Cgt
gi|2 : TAGAGCTGTGCGGTTTTTATTGCAATATTG-TGTATTG-CAA--TACTTCCTTCCACAATATGT--ATTGCAAT-ATG-TTTTCAAGAATGCCG-GTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTC--TTTATAAAAATGGAAAGTTAATGCATTCTGAT-TACCCGTGGTGAGGTACGAGA-G-GC-AAAATCATTCA--------AT-GAGACCACATCCTAGTCAAAAAA----GAG----AA------GGAAAGGTACAGTTCAAGCAA-ACA--G-TTTGCCTT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---C-AGT--CATATCG-AGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTTC--AATCATTGAC--AATCTTTTCA-CCAAAAAA-TTACGACTAAAAATCAAGCAACA---------T-GA--A---TT-G-AT-G-CCTAAATGATTTTTTTTTTTTTTTTTTTTTCCATGTCT-TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTTt
gi|3 : TAGGACTGTGCCGGTTT-ATTGAGATATTGGTGCATTGCCAAATTATTTCGTT-CACAATACGTAAATTGCAATAACGTTTTTCAAGAATACCG-GTTCGGG-TCAATATTTC--ACTTTTTCTGGAGTT-TCTTTCTTTTTTTGAAAATGAAAA--TAG-GCA-TCTAATATCTCC-T-ATG-GGTACGAGAGGAGCGAAAATCAATAA-------TATGGAGA-CACATCC-AGT-AAAAAA----GAGA---AA-----AGGAAAAGTACAGTT-AAGC-ATGCA--GCCTTGCA-T-TCTCTGCAAACAATG----TGTTA--AATCTCCGGACCGGCGATACATCGAATCTGTCCC-AGTCCCATAT-GAAAGAGACATCATGACAATGTA--GTCATAGG--CAAACGTCTTCCAAATCA-TGAC--AAT-GTTTCACCCAAAAAGTTTACGACTA-----CAATGAATATTGG-----T-GAACA---TT-GAACAA-CCTGAATA------------TTTTTTTTTTGCATGTC--TA-TTTTGAATCGAAAAGCGTAGTTT
gi|4 : GCAT-CTGAT--ACCC-TGGTGAGGTACGAGAAG-GC-AAAATCATTCA-------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-CAGCATAACA--G-TTTGC-CT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTAT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GCCAT-AGGCCAAACGTCTTCT-AATCA-TGAC--AATC-TTTCA-CCAAAAA--TTACGACT-AAAATC-AGCAACA---------T-GA--A---TT-G-AT-G-CCTAAATGA----TTTTTTTTTTTTTTTTTCCATGTC--TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTC-TTGTC-ATTTTAGATC-TTTTAATGATCTT
gi|5 : atgCAATATTTC--ACTTTTTCTGGAGTTATCTTTC--TTTTTTTGAATGAAAA--TGG--CAT-CTAAT--ATCC-TAGTGGGGTACGAGAAG-GC-AAAATCAATAA-------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAAGTACAGTT-AAGCAATGCA--G-CTTGCA-T-TCTCTGCAACAAATG----TGTTA--AA---CCGG-CCGGCAGAACTTCGAATCTGT-CC-AGT--CATAT-G-AAGAGACATCATGACAATGTA--GTCAT-AGGCCAAACGTCTTCC-AATCA-TGAC--AAT-GTTTCA-CC-AAAAG-TTACGACTA-----CAATCAATATTGTG----T-GAACA---TT-G-ACAA-CCTGAAT-A----TTTATTTTTTtttccagtttcaggaacactacaaaatac
gi|6 : CACATCCTAGTAAAAAAAAAATGAGTTC-AA-----AGGAAAGGTTAAGTT-AAGCAATTCA--G-TTTGCATT--CTCTGCAACAAATG----TGTTA--AA---CCGG-CCAGCAGAACTTC-----------------CATAT-G-AAGAGACACCATGGCAACATA--GTCATA-GGCCAGAC---TTCC-AATT-TTGAC--ACT-GTTTTA-CCAAAA-G-TTACGACTACAA-TCAA-CAACA---------TTGA--AGACTT-G-AT-GTCCTGAAT----------------TTTTTTTTC-------TA-TTTTGAATCAAAAAGCATAATTTCAGTCTTTCTGTTTGTATTTC-TTGTCAA-TTTAGAT-TTTTGAAAGATTTTg
gi|7 : TAGGGCTGTGTGGTTTT-ATTGAGGTATTGGTGTATTG-CAA--TATTTTCGTTCACAATACGT--ATTGCAAT-AAG-CTTTTCAGAATACAG-GTTCGGGTTCAATATTTT--ACTTTTTCTGAAGTTAT------------GATAAT--ATC--TAG-GCAT-CTAAT--ACCT-TGATGAGATACGAGAAG-GC-ACAATAAATAA-------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACA-TT-AAGCAATGCA--G-TTTGCA-T-TCTCTGCAATGAATG----TGTTA--AA---CCGG-CTGGTGGAA
gi|8 : AGTT-AAGGCACGCACAG-TTTGCATTCTCTC----ATGAATGGTTTTGTTATTAA---CTGG-CCGGCAGAACTTTGAATCTGT-CCAAGTCCCATAT-G-AAGAGA-ATC-TGGCGACATA--GTAATAGGG-CAAACGTCTTCT-AATCATTGACCAGATC-TTTCA-CCAAAAAG-TTACGACT---AATCAGCCAACATTGTG----T-GAACA---TTGG-ACAA-CCTGA----------------TTTAATGCTGGAT---T-TATTTTTGAATCAAAAAGC
gi|9 : -TTTTC-AGAATACCG-ATTCGGGTTTACTATTAT--ACTTTTTCTGGACTTATCTTTC--TTTTT-AAAATGGAAA--TGGGA---TCTAGT--GCCT-TAGTGAGGTACGAGAAG-GC-AAAATAAA-AA-------TAT-GAGACCACATCTTAGTCAAAAAT----GAG----GA-----AGGAAAGGTACAGTT-AAGAAATACA--G-TTTGC---------------AATG----TGTTG--AA---CAGG-CCGGTGTAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGTAACACGTAGGTACAGGCCGGTGTAACGAC
Alignments
lowQualScore : 11 1 11 11 1 11 11111111111 22 1111111 1111 11 22 1111 11 1 11 1 22 222 222222222222222 1 555555555555555 22222 33333333 1 111
lowQualScore : 8 66 0 0 11 8 2 11 8 6 0 6 1 1 1 33 3 1 0 66 444 88888888888 44 8 1 2 4 4 4 4 4444444 4 7777 7777 99999 6 2 44 3 77 44 7777 00 666 4 0 5555 5 55 1 5 66 22 99 8 66 44 4 4 4 444 1 1 9 666666666666666 5 5 7 888888888888888 1 44444 5 1 66666666 5 111 55
lowQualScore : . .. . . .. . . .. . . . . . . . .. . . . .. ... ........... .. . . . . . . . ....... . .... .... ..... . . .. . .. .. .... .. ... . . .... . .. . . .. .. .. . .. .. . . . ... . . . ............... . . . ............... . ..... . . ........ . ... ..
lowQualScore : 0 22 6 0 00 0 5 00 0 7 5 7 5 0 4 88 2 1 4 99 888 99999999999 44 0 4 3 7 0 0 0 7777777 0 7777 7777 11111 7 6 66 3 88 55 7777 00 444 0 4 3333 7 77 4 7 11 66 11 2 11 44 4 6 4 333 8 9 7 999999999999999 0 0 4 222222222222222 0 00000 7 0 22222222 5 000 88
consensus : TAGGGCTGTGC-GGTTTTTATTGAGATATTGGTGTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-TGTTTT-CGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTC--TTTTTAAAAATGGAAA--TGG-GCATTCTAAT-TACCC-TGGTGAGGTACGAGAAG-GC-AAAATCAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-AAGCAATGCA--G-TTTGCATT-TCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GTCATAAGGCCAAACGTCTTCC-AATCATTGAC--AATCGTTTCA-CCAAAAAG-TTACGACTAAAAATCAAGCAACAT--T-GTGAAC----ATT-G-ATAGCCTGAATGA-TTT-T-----TTTTTTTTTTTTNCATGTCT-TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
Reference ( family-3428 ) : TAGGGCTGTGC-GGTTTTTATTGAGATATTGGTGTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-TGTTTT-CGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTC--TTTTTAAAAATGGAAA--TGG-GCATTCTAAT-TACCC-TGGTGAGGTACGAGAAG-GC-AAAATCAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-AAGCAATGCA--G-TTTGCATT-TCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GTCATAAGGCCAAACGTCTTCC-AATCATTGAC--AATCGTTTCA-CCAAAAAG-TTACGACTAAAAATCAANCAACAT--T-GTGAAC----ATT-G-ATAGCCTGAATGA-TTT-T-----TTTTTTTTTTTTNCATGTCT-TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|1 : TAGAGCTGTGC-GGTTTTTATTGCAATATTG-TGTATTGC--AAT-ACTTCCTTCCACAATATGTA--TTGCAATA-TGTTTT-CAAGAATGCCG-GTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTC--TTTATAAAAATGGAAAGTTAATGCATTCTGAT-TACCCGTGGTGAGGTACGAGA-G-GC-AAAATCATT-CA-------AT-GAGACCACATCCTAGTCAAAAAA----GAG----AA------GGAAAGGTACAGTTCAAGCAA-ACA--G-TTTGCCTT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---C-AGT--CATATCG-AGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTTC--AATCATTGAC--AATCTTTTCA-CCAAAAAA-TTACGACTAAAAATCAAGCAACAT------GAA------TT-G-AT-GCCTAAATGA-TTT-TTTTTTTTTTTTTTTTTTCCATGTCT-TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|10 : CGTA--TTG-AATA-TATTTT-CG-GAATACTGTGTCCA-----AATATTTT--A-TTTTTCTGGAATTTACTTTC--TTTT-AAAAATGAAAA--TGG-A---TCTAAT--ACCC-TGGTA--GTACGAGAAG-GC-AAAATCAATCAATTAAATTAT-GGACCCATACCTTAGTC-AAAAA----GAG----AA-----AG
gi|11 : AGACATCATGGCAACATT--GTCAT-AGGCCAGACGTCTTCC-AATTA-TGAC--AAT-GTTTCA-C--AAAAG-TTACGACT-ACAATCAA-CAACAT--T-GAAGACTTGAATT-A-AT-GTCTGAAT-A-TTTGT-----TGGGTTTTTTTTGCAT---TATA-TTTTGAATCAAAAAca
gi|12 : GTGAGGTACTA-------------CAAT-AC------GAT-GAGCCCACATCCTAGTCAAAAAG----GGG----AATTCAAAGGAAAAGTAAAGTT-ATGCAATGCT--G-ATTGCATT--CTCTGCAACGAATG----TGTTA--AA---CCAG-CCGGCGGAACTTCG
gi|13 : aG-GCAT-CTAAT--ACCC-TAGTAAGGTAATAGAAG-AC-AAAATCAAT-AA------TAT-GAGATCACATCCTAGTCAAAAAA----GGAATTCAA-----AGGAAAGATAAAGTT-AAGCAATGTA--G-TTTGCA-T-TCTCT
gi|14 : CATCATGGCAACATATAGTCATA-GGCCAAATGTCTTCC-AATCA-TGAC--AAT-GTTTCA-CC-AAATG-TTACCACT-ACAATC-AGCATCAT--T-GT
gi|15 : GGTTCAATATTTT--ACTTTTTCTGGAATTATCTTTC--TTTTT-AAAATGGAAA--T-G-GCA-TCTAA--TACCC-TAGT
gi|16 : TAGGGCTGTGG-GGTTTT-ATTGAGACATTGGAGTATTGC--AAT-ATTTTC
gi|17 : tgT-AATCAATGCG--G-TTTGC-TT-TATCCTCAATGAATG----TGTTA--AA---Cgt
gi|2 : TAGAGCTGTGC-GGTTTTTATTGCAATATTG-TGTATTGC--AAT-ACTTCCTTCCACAATATGTA--TTGCAATA-TGTTTT-CAAGAATGCCG-GTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTC--TTTATAAAAATGGAAAGTTAATGCATTCTGAT-TACCCGTGGTGAGGTACGAGA-G-GC-AAAATCATT-CA-------AT-GAGACCACATCCTAGTCAAAAAA----GAG----AA------GGAAAGGTACAGTTCAAGCAA-ACA--G-TTTGCCTT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---C-AGT--CATATCG-AGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTTC--AATCATTGAC--AATCTTTTCA-CCAAAAAA-TTACGACTAAAAATCAAGCAACAT------GAA------TT-G-AT-GCCTAAATGA-TTT-TTTTTTTTTTTTTTTTTTCCATGTCT-TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTTt
gi|3 : TAGGACTGTGCCGGTTT--ATTGAGATATTGGTGCATTGCCAAATTATTTCGTTC-ACAATACGTAAATTGCAATAACGTTTTTCAAGAATACCG-GTTCGGG-TCAATATTTC--ACTTTTTCTGGAGTT-TCTTTCTTTTTTTGAAAATGAAAA--TAG-GCA-TCTAATATCTCC-T-ATG-GGTACGAGAGGAGCGAAAATCAAT-AA------TATGGAGA-CACATCC-AGT-AAAAAA----GAGA---AA-----AGGAAAAGTACAGTT-AAGC-ATGCA--GCCTTGCA-T-TCTCTGCAAACAATG----TGTTA--AATCTCCGGACCGGCGATACATCGAATCTGTCCC-AGTCCCATAT-GAAAGAGACATCATGACAATGTA--GTCATAGG--CAAACGTCTTCCAAATCA-TGAC--AAT-GTTTCACCCAAAAAGTTTACGACTA-----CAATGAATAT--TGGTGAAC----ATT-GAACAACCTGAATA--------------TTTTTTTTTTGCATGTC--TA-TTTTGAATCGAAAAGCGTAGTTT
gi|4 : G-GCAT-CTGAT--ACCC-TGGTGAGGTACGAGAAG-GC-AAAATCATT-CA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-CAGCATAACA--G-TTTGC-CT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTAT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GCCAT-AGGCCAAACGTCTTCT-AATCA-TGAC--AATC-TTTCA-CCAAAAA--TTACGACT-AAAATC-AGCAACA------TGA------ATT-G-AT-GCCTAAATGATTTT-T-----TTTTTTTTTTTTCCATGTC--TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTC-TTGTC-ATTTTAGATC-TTTTAATGATCTT
gi|5 : atCAATATTTC--ACTTTTTCTGGAGTTATCTTTC--TTTTTTTGAATGAAAA--TGG--CAT-CTAAT--ATCC-TAGTGGGGTACGAGAAG-GC-AAAATCAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAAGTACAGTT-AAGCAATGCA--G-CTTGCA-T-TCTCTGCAACAAATG----TGTTA--AA---CCGG-CCGGCAGAACTTCGAATCTGT-CC-AGT--CATAT-G-AAGAGACATCATGACAATGTA--GTCAT-AGGCCAAACGTCTTCC-AATCA-TGAC--AAT-GTTTCA-CC-AAAAG-TTACGACTA-----CAATCAATATTGT-GTGAAC----ATT-G-ACAACCTGAAT-A-TTT-A-----TTTTTTtttccagtttcaggaacactacaaaatac
gi|6 : CACATCCTAGTAAAAAAAAAATGAGTTC-AA-----AGGAAAGGTTAAGTT-AAGCAATTCA--G-TTTGCATT--CTCTGCAACAAATG----TGTTA--AA---CCGG-CCAGCAGAACTTC-----------------CATAT-G-AAGAGACACCATGGCAACATA--GTCATA-GGCCAGAC---TTCC-AATT-TTGAC--ACT-GTTTTA-CCAAAA-G-TTACGACTACAA-TCAA-CAACAT--T-GAAGAC-----TT-G-ATGTCCTGAAT------------------TTTTTTTTC-------TA-TTTTGAATCAAAAAGCATAATTTCAGTCTTTCTGTTTGTATTTC-TTGTCAA-TTTAGAT-TTTTGAAAGATTTTg
gi|7 : TAGGGCTGTGT-GGTTTT-ATTGAGGTATTGGTGTATTGC--AAT-ATTTTCGTTCACAATACGTA--TTGCAATA-AGCTTT-TCAGAATACAG-GTTCGGGTTCAATATTTT--ACTTTTTCTGAAGTTAT------------GATAAT--ATC--TAG-GCAT-CTAAT--ACCT-TGATGAGATACGAGAAG-GC-ACAATAAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACA-TT-AAGCAATGCA--G-TTTGCA-T-TCTCTGCAATGAATG----TGTTA--AA---CCGG-CTGGTGGAA
gi|8 : AGTT-AAGGCACGCACAG-TTTGCATTCTCTC----ATGAATGGTTTTGTTATTAA---CTGG-CCGGCAGAACTTTGAATCTGT-CCAAGTCCCATAT-G-AAGAGA-ATC-TGGCGACATA--GTAATAGGG-CAAACGTCTTCT-AATCATTGACCAGATC-TTTCA-CCAAAAAG-TTACGACT---AATCAGCCAACATTGT-GTGAAC----ATTGG-ACAACCTGA------------------TTTAATGCTGGAT---T-TATTTTTGAATCAAAAAGC
gi|9 : TTTT-C-AGAATACCG-ATTCGGGTTTACTATTAT--ACTTTTTCTGGACTTATCTTTC--TTTTTAAAA-TGGAAA--TGG-G-AT-CTAGT--GCCT-TAGTGAGGTACGAGAAG-GC-AAAATAAA--AA------TAT-GAGACCACATCTTAGTCAAAAAT----GAG----GA-----AGGAAAGGTACAGTT-AAGAAATACA--G-TTTGC---------------AATG----TGTTG--AA---CAGG-CCGGTGTAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGTAACACGTAGGTACAGGCCGGTGTAACGAC
Alignments
lowQualScore : 11 1 11 11 1 11 11111111111 22 1111111 1111 11 22 1111 11 1 11 1 22 222 222222222222222 1 555555555555555 22222 33333333 1 111
lowQualScore : 8 66 0 0 11 8 2 11 8 6 0 6 1 1 1 33 3 1 0 66 444 88888888888 44 8 1 2 4 4 4 4 4444444 4 7777 7777 99999 6 2 44 3 77 44 7777 00 666 4 0 5555 5 55 1 5 66 22 99 8 66 44 4 4 4 444 1 1 9 666666666666666 5 5 7 888888888888888 1 44444 5 1 66666666 5 111 55
lowQualScore : . .. . . .. . . .. . . . . . . . .. . . . .. ... ........... .. . . . . . . . ....... . .... .... ..... . . .. . .. .. .... .. ... . . .... . .. . . .. .. .. . .. .. . . . ... . . . ............... . . . ............... . ..... . . ........ . ... ..
lowQualScore : 0 22 6 0 00 0 5 00 0 7 5 7 5 0 4 88 2 1 4 99 888 99999999999 44 0 4 3 7 0 0 0 7777777 0 7777 7777 11111 7 6 66 3 88 55 7777 00 444 0 4 3333 7 77 4 7 11 66 11 2 11 44 4 6 4 333 8 9 4 999999999999999 0 0 4 222222222222222 0 00000 7 0 22222222 5 000 88
consensus : TAGGGCTGTGC-GGTTTTTATTGAGATATTGGTGTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-TGTTTT-CGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTC--TTTTTAAAAATGGAAA--TGG-GCATTCTAAT-TACCC-TGGTGAGGTACGAGAAG-GC-AAAATCAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-AAGCAATGCA--G-TTTGCATT-TCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GTCATAAGGCCAAACGTCTTCC-AATCATTGAC--AATCGTTTCA-CCAAAAAG-TTACGACTAAAAATCAAGCAACAT--T-GTGAAC----ATT-G-ATAGCCTGAATGA-TTT-T-----TTTTTTTTTTTTNCATGTCT-TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
Reference ( family-3428 ) : TAGGGCTGTGC-GGTTTTTATTGAGATATTGGTGTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-TGTTTT-CGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTC--TTTTTAAAAATGGAAA--TGG-GCATTCTAAT-TACCC-TGGTGAGGTACGAGAAG-GC-AAAATCAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-AAGCAATGCA--G-TTTGCATT-TCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GTCATAAGGCCAAACGTCTTCC-AATCATTGAC--AATCGTTTCA-CCAAAAAG-TTACGACTAAAAATCAAGCAACAT--T-GTGAAC----ATT-G-ATAGCCTGAATGA-TTT-T-----TTTTTTTTTTTTNCATGTCT-TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|1 : TAGAGCTGTGC-GGTTTTTATTGCAATATTG-TGTATTGC--AAT-ACTTCCTTCCACAATATGTA--TTGCAATA-TGTTTT-CAAGAATGCCG-GTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTC--TTTATAAAAATGGAAAGTTAATGCATTCTGAT-TACCCGTGGTGAGGTACGAGA-G-GC-AAAATCATT-CA-------AT-GAGACCACATCCTAGTCAAAAAA----GAG----AA------GGAAAGGTACAGTTCAAGCAA-ACA--G-TTTGCCTT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---C-AGT--CATATCG-AGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTTC--AATCATTGAC--AATCTTTTCA-CCAAAAAA-TTACGACTAAAAATCAAGCAACAT------GAA------TT-G-AT-GCCTAAATGA-TTT-TTTTTTTTTTTTTTTTTTCCATGTCT-TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|10 : CGTA--TTG-AATA-TATTTT-CG-GAATACTGTGTCCA-----AATATTTT--A-TTTTTCTGGAATTTACTTTC--TTTT-AAAAATGAAAA--TGG-A---TCTAAT--ACCC-TGGTA--GTACGAGAAG-GC-AAAATCAATCAATTAAATTAT-GGACCCATACCTTAGTC-AAAAA----GAG----AA-----AG
gi|11 : AGACATCATGGCAACATT--GTCAT-AGGCCAGACGTCTTCC-AATTA-TGAC--AAT-GTTTCA-C--AAAAG-TTACGACT-ACAATCAA-CAACAT--T-GAAGACTTGAATT-A-AT-GTCTGAAT-A-TTTGT-----TGGGTTTTTTTTGCAT---TATA-TTTTGAATCAAAAAca
gi|12 : GTGAGGTACTA-------------CAAT-AC------GAT-GAGCCCACATCCTAGTCAAAAAG----GGG----AATTCAAAGGAAAAGTAAAGTT-ATGCAATGCT--G-ATTGCATT--CTCTGCAACGAATG----TGTTA--AA---CCAG-CCGGCGGAACTTCG
gi|13 : aG-GCAT-CTAAT--ACCC-TAGTAAGGTAATAGAAG-AC-AAAATCAAT-AA------TAT-GAGATCACATCCTAGTCAAAAAA----GGAATTCAA-----AGGAAAGATAAAGTT-AAGCAATGTA--G-TTTGCA-T-TCTCT
gi|14 : CATCATGGCAACATATAGTCATA-GGCCAAATGTCTTCC-AATCA-TGAC--AAT-GTTTCA-CC-AAATG-TTACCACT-ACAATC-AGCATCAT--T-GT
gi|15 : GGTTCAATATTTT--ACTTTTTCTGGAATTATCTTTC--TTTTT-AAAATGGAAA--T-G-GCA-TCTAA--TACCC-TAGT
gi|16 : TAGGGCTGTGG-GGTTTT-ATTGAGACATTGGAGTATTGC--AAT-ATTTTC
gi|17 : tgT-AATCAATGCG--G-TTTGC-TT-TATCCTCAATGAATG----TGTTA--AA---Cgt
gi|2 : TAGAGCTGTGC-GGTTTTTATTGCAATATTG-TGTATTGC--AAT-ACTTCCTTCCACAATATGTA--TTGCAATA-TGTTTT-CAAGAATGCCG-GTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTC--TTTATAAAAATGGAAAGTTAATGCATTCTGAT-TACCCGTGGTGAGGTACGAGA-G-GC-AAAATCATT-CA-------AT-GAGACCACATCCTAGTCAAAAAA----GAG----AA------GGAAAGGTACAGTTCAAGCAA-ACA--G-TTTGCCTT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---C-AGT--CATATCG-AGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTTC--AATCATTGAC--AATCTTTTCA-CCAAAAAA-TTACGACTAAAAATCAAGCAACAT------GAA------TT-G-AT-GCCTAAATGA-TTT-TTTTTTTTTTTTTTTTTTCCATGTCT-TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTTt
gi|3 : TAGGACTGTGCCGGTTT--ATTGAGATATTGGTGCATTGCCAAATTATTTCGTTC-ACAATACGTAAATTGCAATAACGTTTTTCAAGAATACCG-GTTCGGG-TCAATATTTC--ACTTTTTCTGGAGTT-TCTTTCTTTTTTTGAAAATGAAAA--TAG-GCA-TCTAATATCTCC-T-ATG-GGTACGAGAGGAGCGAAAATCAAT-AA------TATGGAGA-CACATCC-AGT-AAAAAA----GAGA---AA-----AGGAAAAGTACAGTT-AAGC-ATGCA--GCCTTGCA-T-TCTCTGCAAACAATG----TGTTA--AATCTCCGGACCGGCGATACATCGAATCTGTCCC-AGTCCCATAT-GAAAGAGACATCATGACAATGTA--GTCATAGG--CAAACGTCTTCCAAATCA-TGAC--AAT-GTTTCACCCAAAAAGTTTACGACTA-----CAATGAATAT--TGGTGAAC----ATT-GAACAACCTGAATA--------------TTTTTTTTTTGCATGTC--TA-TTTTGAATCGAAAAGCGTAGTTT
gi|4 : G-GCAT-CTGAT--ACCC-TGGTGAGGTACGAGAAG-GC-AAAATCATT-CA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-CAGCATAACA--G-TTTGC-CT-TCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTAT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GCCAT-AGGCCAAACGTCTTCT-AATCA-TGAC--AATC-TTTCA-CCAAAAA--TTACGACT-AAAATC-AGCAACA------TGA------ATT-G-AT-GCCTAAATGATTTT-T-----TTTTTTTTTTTTCCATGTC--TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTC-TTGTC-ATTTTAGATC-TTTTAATGATCTT
gi|5 : atCAATATTTC--ACTTTTTCTGGAGTTATCTTTC--TTTTTTTGAATGAAAA--TGG--CAT-CTAAT--ATCC-TAGTGGGGTACGAGAAG-GC-AAAATCAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAAGTACAGTT-AAGCAATGCA--G-CTTGCA-T-TCTCTGCAACAAATG----TGTTA--AA---CCGG-CCGGCAGAACTTCGAATCTGT-CC-AGT--CATAT-G-AAGAGACATCATGACAATGTA--GTCAT-AGGCCAAACGTCTTCC-AATCA-TGAC--AAT-GTTTCA-CC-AAAAG-TTACGACTA-----CAATCAATATTGT-GTGAAC----ATT-G-ACAACCTGAAT-A-TTT-A-----TTTTTTtttccagtttcaggaacactacaaaatac
gi|6 : CACATCCTAGTAAAAAAAAAATGAGTTC-AA-----AGGAAAGGTTAAGTT-AAGCAATTCA--G-TTTGCATT--CTCTGCAACAAATG----TGTTA--AA---CCGG-CCAGCAGAACTTC-----------------CATAT-G-AAGAGACACCATGGCAACATA--GTCATA-GGCCAGAC---TTCC-AATT-TTGAC--ACT-GTTTTA-CCAAAA-G-TTACGACTACAA-TCAA-CAACAT--T-GAAGAC-----TT-G-ATGTCCTGAAT------------------TTTTTTTTC-------TA-TTTTGAATCAAAAAGCATAATTTCAGTCTTTCTGTTTGTATTTC-TTGTCAA-TTTAGAT-TTTTGAAAGATTTTg
gi|7 : TAGGGCTGTGT-GGTTTT-ATTGAGGTATTGGTGTATTGC--AAT-ATTTTCGTTCACAATACGTA--TTGCAATA-AGCTTT-TCAGAATACAG-GTTCGGGTTCAATATTTT--ACTTTTTCTGAAGTTAT------------GATAAT--ATC--TAG-GCAT-CTAAT--ACCT-TGATGAGATACGAGAAG-GC-ACAATAAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACA-TT-AAGCAATGCA--G-TTTGCA-T-TCTCTGCAATGAATG----TGTTA--AA---CCGG-CTGGTGGAA
gi|8 : AGTT-AAGGCACGCACAG-TTTGCATTCTCTC----ATGAATGGTTTTGTTATTAA---CTGG-CCGGCAGAACTTTGAATCTGT-CCAAGTCCCATAT-G-AAGAGA-ATC-TGGCGACATA--GTAATAGGG-CAAACGTCTTCT-AATCATTGACCAGATC-TTTCA-CCAAAAAG-TTACGACT---AATCAGCCAACATTGT-GTGAAC----ATTGG-ACAACCTGA------------------TTTAATGCTGGAT---T-TATTTTTGAATCAAAAAGC
gi|9 : TTTT-C-AGAATACCG-ATTCGGGTTTACTATTAT--ACTTTTTCTGGACTTATCTTTC--TTTTTAAAA-TGGAAA--TGG-G-AT-CTAGT--GCCT-TAGTGAGGTACGAGAAG-GC-AAAATAAA--AA------TAT-GAGACCACATCTTAGTCAAAAAT----GAG----GA-----AGGAAAGGTACAGTT-AAGAAATACA--G-TTTGC---------------AATG----TGTTG--AA---CAGG-CCGGTGTAAC
blockSeqs : C TT G CA T C AA A T G T C A T TT T A TT ATA GTTAATGCATT AT G G A A A G C TTAAATT G AAAT ATTC TTCAA C T CA C AT CT GTTT TT TCT A GTCC A CC C A TA AA CA T CA CT C A T AAA A A G TGAAGACTTGAA G A A GATTTTTTTTTTT G GTCT T T GTCTTTCT T AT CT
blockSeqs : . T G . . C . . . A . G T T . T A . TTG TAGGCAT T . A A A . . . G . . TTC . . T . . CT T . TT . . ATC . CC . . . AG C T . G . A . ACA A A G TGTGTGAACA . . A GATTTTTTT C GTC . G . . AA C
blockSeqs : . T G . . . . . . A . T G T . T A . TTT TAGGCAT T . A A G . . . T . . A . . T . . AT T . TT . . GTC . . . . . AG C T . G . A . AC A A T TGTGTGAACA . . G ATTTGTTG G GTC . T . . A T
blockSeqs : . . . . . . . . C . T G T . T G . TTA TGGCAT . . G A A . . . T . . . . . T . . AT T . . . . GTC . . . . . A T . . G . A . AC A A G TGGTGAACA . . A ATTTATT C TA . G
blockSeqs : . . . T G . . T G . TA TGGCAT . . G G A . . . T . . . . . A . . A T . . . . A . . . . . A C . . C . A . AA A A T TGAAGAC . . . A T T . G
blockSeqs : . . T G . TT TGGGAT . . A A A . . . T . . . . . T . . T T . . . . . . . . . . A C . . G . . . A . A C TGAA . . . . G . .
blockSeqs : . . C . G TGGAT . . G A A . . . T . . . . . T . . A T . . . . . A T . . G . . . A . . . GAA . . . .
blockSeqs : . . A . . . . . T . . . . . T . . C T . . . . . A . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . A . . . . .
blockSeqs : . . . . T . . A . . . .
blockSeqs : . . . . . .
blockSeqCons : T* ** TGGCAT***** ** T****** A* ** GTC* A* C* G* A** TGTGAAA******** GTTTTT********* GTC**
originalCons : TAGGGCTGTGC-GGTTTTTATTGAGATATTGGTGTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-TGTTTT-CGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTC--TTTTTAAAAATGGAAA--TGG-GCATTCTAAT-TACCC-TGGTGAGGTACGAGAAG-GC-AAAATCAAT-AA------TAT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-AAGCAATGCA--G-TTTGCATT-TCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CC-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GTCATAAGGCCAAACGTCTTCC-AATCATTGAC--AATCGTTTCA-CCAAAAAG-TTACGACTAAAAATCAAGCAACAT--T-GTGAAC----ATT-G-ATAGCCTGAATGA-TTT-T-----TTTTTTTTTTTTNCATGTCT-TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
finalCons : TAGGGCTGTGC-GGTTTT-ATTGAGATATTGGTGTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-TGTTTT-CGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTC--TTTTTAAAAATGGAAATGGCAT-----CTAAT--ACCC-TGGTGAGGTACGAGAAG-GC-AAAATCAAT-AAT------AT-GAGACCACATCCTAGTCAAAAAA----GAG----AA-----AGGAAAGGTACAGTT-AAGCAATGCA--G-TTTGCA-T-TCTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGTC-C-AGT--CATAT-G-AGGAGACATCATGGCAACATA--GTCATA-GGCCAAACGTCTTCC-AATCATTGAC--AATG-TTTCA-CCAAAAAG-TTACGACTA--AATCAAGCAACATTGTGAAA--------TT-G-ATAGCCTGAATGTTTTT---------TTTTTTTTTTNCATGTC--TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGTAACACGTAGGTACAGGCCGGTGTAACGAC
Alignments
lowQualScore : 1 1 11 11 1 11 11111 111111111 1111111 1111 1111111 22 1111 1 1 2222222 4444444444444444 1 77777777777777777 1 33333333 1 111
lowQualScore : 6 0 0 11 8 2 11 8 6 0 6 1 1 1 33 3 1 0 11111 888888888 8 8 55 8 2 4 4 4 4 4444444 4 7777 4444 2222222 6 2 44 3 6 7777 00 666 4 0 5555 5 77 77 1 5 66 8 99 8 66 1 8 4 4 4 4444444 1 9 9999999999999999 5 5 7 55555555555555555 6 1 888 1 5 1 66666666 5 111 55
lowQualScore : . . . .. . . .. . . . . . . . .. . . . ..... ......... . . .. . . . . . . ....... . .... .... ....... . . .. . . .... .. ... . . .... . .. .. . . .. . .. . .. . . . . . ....... . . ................ . . . ................. . . ... . . . ........ . ... ..
lowQualScore : 0 6 0 00 0 5 00 0 7 5 7 5 0 4 88 2 1 4 66666 444444444 0 0 55 0 3 7 0 0 0 7777777 0 7777 1111 6666666 7 6 66 3 7 7777 00 444 0 4 3333 7 99 99 4 7 11 9 11 2 11 1 9 4 6 4 7777777 9 4 0000000000000000 0 0 4 99999999999999999 6 4 666 4 7 0 22222222 5 000 88
consensus : TAGGGCTGTGCGGTTTTTATTGAGATATTGGTGTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-TGTTTT-CGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTCTTTTT--AAAAATGGAAA--T---G--GCAT-CTAAT-ACC--C-TGGTGAGGTACGAGAAG-GC-AAAATCAAT-AA------TATG-AGACCACATCCTAGTCAAAAAA----GAG----AA-----A-GGAAAGGTACAGTT-AAGCAATGCA--GT-TTGCATT-CTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CCA-GT--C--ATAT-G-AGGAGACATCATGGCAACATA--GTCATA-GGCCAAACGTCTTCC-AATCATTGAC--AATGTTT-CA-CCAAAAAG-TTACGACT-A-AA--TCAAGCAACAT--T-G------TGGACATT-G-ATAGCCTGAATGATT-----TTT-TT--TTTTTTTTTNCATG--TC-TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
Reference ( family-3428 ) : TAGGGCTGTGCGGTTTT-ATTGAGATATTGGTGTATTGC--AAT-ATTTCCTTCCACAATACGTA--TTGCAATA-TGTTTT-CGAGAATACCG-GTTCGGGTTCAATATTTT--ACTTTTTCTGGAGTTATCTTTCTTTTT--AAAAATGGAAA--T---G--GCAT-CTAAT-ACC--C-TGGTGAGGTACGAGAAG-GC-AAAATCAAT-AA------TATG-AGACCACATCCTAGTCAAAAAA----GAG----AA-----A-GGAAAGGTACAGTT-AAGCAATGCA--GT-TTGCATT-CTCTGCAACGAATG----TGTTA--AA---CCGG-CCGGCGGAACTTCGAATCTGT-CCA-GT--C--ATAT-G-AGGAGACATCATGGCAACATA--GTCATA-GGCCAAACGTCTTCC-AATCATTGAC--AATGTTT-CA-CCAAAAAG-TTACGACT-A-AA--TCAAGCAACAT--T-G------TGAA-ATT-G-ATAGCCTGAATG--------TTTTTT--TTTTTTTTTNCATG--TC-TA-TTTTGAATCAAAAANCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|1 : TAGAGCTGTGCGGTTTTTATTGCAATATTG-TGTATTGC--AAT-ACTTCCTTCCACAATATGTA--TTGCAATA-TGTTTT-CAAGAATGCCG-GTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTCTTTAT--AAAAATGGAAAGTT---AATGCATTCTGATTACC--CGTGGTGAGGTACGAGA-G-GC-AAAATCATT-CA-------ATG-AGACCACATCCTAGTCAAAAAA----GAG----AA-------GGAAAGGTACAGTTCAAGCAA-ACA--GT-TTGCCTTTCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---CA-GT--C--ATATCG-AGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTTC--AATCATTGAC--AATCTTTTCA-CCAAAAAA-TTACGACT-A-AAAATCAAGCAACAT-------------GA-ATT-G-AT-GCCTAAATGATTTTTTTTTTT-T--TTTTTTTTTCCATG--TCTTA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTT
gi|10 : CGTA--TTG-AATA-TATTTT-CG-GAATACTGTGTCCA-----AATATTTT--A-TTTTTCTGGAATTTACTTTCTTTT---AAAAATGAAAA--T---G--G-AT-CTAAT-ACC--C-TGGTA--GTACGAGAAG-GC-AAAATCAATCAATTAAATTATG-GACCCATACCTTAGTC-AAAAA----GAG----AA-----A-G
gi|11 : AGACATCATGGCAACATT--GTCATA-GGCCAGACGTCTTCC-AATTA-TGAC--AATGTTT-CA-C--AAAAG-TTACGACT-ACAA--TCAA-CAACAT--T-GAAGACTTG-A-ATT-A-AT-GTCTGAATA--------TTTGTTGGGTTTTTTTTGCAT---TA-TA-TTTTGAATCAAAAAca
gi|12 : GTGAGGTACTA-------------CAAT-AC------GATG-AGCCCACATCCTAGTCAAAAAG----GGG----AATTCAAA-GGAAAAGTAAAGTT-ATGCAATGCT--GA-TTGCATT-CTCTGCAACGAATG----TGTTA--AA---CCAG-CCGGCGGAACTTCG
gi|13 : a---G--GCAT-CTAAT-ACC--C-TAGTAAGGTAATAGAAG-AC-AAAATCAAT-AA------TATG-AGATCACATCCTAGTCAAAAAA----GGAATTCAA-----A-GGAAAGATAAAGTT-AAGCAATGTA--GT-TTGCATT-CTCT
gi|14 : CATCATGGCAACATATAGTCATA-GGCCAAATGTCTTCC-AATCA-TGAC--AATGTTT-CA-CC-AAATG-TTACCACT-ACAA--TC-AGCATCAT--T-G------T
gi|15 : GGTTCAATATTTT--ACTTTTTCTGGAATTATCTTTCTTTTT---AAAATGGAAA--T---G--GCAT-CTAAT-ACC--C-TAGT
gi|16 : TAGGGCTGTGGGGTTTT-ATTGAGACATTGGAGTATTGC--AAT-ATTTTC
gi|17 : tgT-AATCAATGCG--GT-TTGCTTT-ATCCTCAATGAATG----TGTTA--AA---Cgt
gi|2 : TAGAGCTGTGCGGTTTTTATTGCAATATTG-TGTATTGC--AAT-ACTTCCTTCCACAATATGTA--TTGCAATA-TGTTTT-CAAGAATGCCG-GTGGTGGTTCAATATTTTTTACTTTTTC-GGAATTATCTTTCTTTAT--AAAAATGGAAAGTT---AATGCATTCTGATTACC--CGTGGTGAGGTACGAGA-G-GC-AAAATCATT-CA-------ATG-AGACCACATCCTAGTCAAAAAA----GAG----AA-------GGAAAGGTACAGTTCAAGCAA-ACA--GT-TTGCCTTTCTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTA---CA-GT--C--ATATCG-AGGAGACATCATGGCAACATA--GCCATAAGGCCAAACGTCTTC--AATCATTGAC--AATCTTTTCA-CCAAAAAA-TTACGACT-A-AAAATCAAGCAACAT-------------GA-ATT-G-AT-GCCTAAATGATTTTTTTTTTT-T--TTTTTTTTTCCATG--TCTTA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTCTTTGTC-A-TTTAGATCTTTTTAATGATCTTt
gi|3 : TAGGACTGTGCCGGTTT-ATTGAGATATTGGTGCATTGCCAAATTATTTCGTTC-ACAATACGTAAATTGCAATAACGTTTTTCAAGAATACCG-GTTCGGGT-CAATATTTC--ACTTTTTCTGGAGTT-TCTTTCTTTTTTTGAAAATGAAAA--TA--G--GCAT-CTAAT-ATCTCC-TA-TG-GGTACGAGAGGAGCGAAAATCAAT-AA------TATGGAGAC-ACATCC-AGT-AAAAAA----GAG----AA-----AAGGAAAAGTACAGTT-AAGCA-TGCA--GCCTTGCATT-CTCTGCAAACAATG----TGTTA--AATCTCCGGACCGGCGATACATCGAATCTGTCCCA-GTCCC--ATAT-GAAAGAGACATCATGACAATGTA--GTCATA-GG-CAAACGTCTTCCAAATCA-TGAC--AATGTTT-CACCCAAAAAGTTTACGACT-A------CAATGAATAT--TGG------TGAACATT-GAACAACCTGAATA-------------T--TTTTTTTTTGCATG--TC-TA-TTTTGAATCGAAAAGCGTAGTTT
gi|4 : A--T---G--GCAT-CTGAT-ACC--C-TGGTGAGGTACGAGAAG-GC-AAAATCATT-CA------TATG-AGACCACATCCTAGTCAAAAAA----GAG----AA-----A-GGAAAGGTACAGTT-CAGCATAACA--GT-TTGCCTT-CTCTGCAACGAATG----TGTTATTAA---CTGG-CCGGCGGAACTTTGAATTTAT-CCA-GT--C--ATAT-G-AGGAGACATCATGGCAACATA--GCCATA-GGCCAAACGTCTTCT-AATCA-TGAC--AATCTTT-CA-CCAAAAA--TTACGACTAA-AA--TC-AGCAACAT-------------GA-ATT-G-AT-GCCTAAATGATT-----TTTTTT--TTTTTTTTTCCATG--TC-TA-TTTTGAATCAAAAATCATACTTTCA--------GTTTATATTTC-TTGTC-ATTTTAGATC-TTTTAATGATCTT
gi|5 : CAATATTTC--ACTTTTTCTGGAGTTATCTTTCTTTTT--TTGAATGAAAA--T---G--GCAT-CTAAT-ATC--C-TAGTGGGGTACGAGAAG-GC-AAAATCAAT-AA------TATG-AGACCACATCCTAGTCAAAAAA----GAG----AA-----A-GGAAAAGTACAGTT-AAGCAATGCA--GC-TTGCATT-CTCTGCAACAAATG----TGTTA--AA---CCGG-CCGGCAGAACTTCGAATCTGT-CCA-GT--C--ATAT-G-AAGAGACATCATGACAATGTA--GTCATA-GGCCAAACGTCTTCC-AATCA-TGAC--AATGTTT-CA-CC-AAAAG-TTACGACT-A------CAATCAATATTGT-G------TGAACATT-G-ACAACCTGAATA--------TTTATT--TTTTtttccagtttcaggaacactacaaaatac
gi|6 : CACATCCTAGTAAAAAAAAAATGAGTTC-AA-----A-GGAAAGGTTAAGTT-AAGCAATTCA--GT-TTGCATT-CTCTGCAACAAATG----TGTTA--AA---CCGG-CCAGCAGAACTTC-----------------C--ATAT-G-AAGAGACACCATGGCAACATA--GTCATA-GGCCAGAC---TTCC-AATT-TTGAC--ACTGTTT-TA-CCAAAA-G-TTACGACT-ACAA--TCAA-CAACAT--T-G------AAGA-CTT-G-ATGTCCTGAAT-------------------TTTTTTT-------TC-TA-TTTTGAATCAAAAAGCATAATTTCAGTCTTTCTGTTTGTATTTC-TTGTCAA-TTTAGAT-TTTTGAAAGATTTTg
gi|7 : TAGGGCTGTGTGGTTTT-ATTGAGGTATTGGTGTATTGC--AAT-ATTTTCGTTCACAATACGTA--TTGCAATA-AGCTTT-TCAGAATACAG-GTTCGGGTTCAATATTTT--ACTTTTTCTGAAGTTAT------------GATAAT----A--TCTAG--GCAT-CTAAT-ACC--T-TGATGAGATACGAGAAG-GC-ACAATAAAT-AA------TATG-AGACCACATCCTAGTCAAAAAA----GAG----AA-----A-GGAAAGGTACA-TT-AAGCAATGCA--GT-TTGCATT-CTCTGCAATGAATG----TGTTA--AA---CCGG-CTGGTGGAA
gi|8 : AGTT-AAGGCACGCACAGT-TTGCATT-CTCT-CA-TGAATGGTTTTGTTATTAA---CTGG-CCGGCAGAACTTTGAATCTGT-CCAAGT--CCCATAT-G-AAGAGA-ATC-TGGCGACATA--GTAATA-GGGCAAACGTCTTCT-AATCATTGACCAGATCTTT-CA-CCAAAAAG-TTACGACT---AA--TCAGCCAACATTGT-G------TGAACATTGG-ACAACCTGA----------------------TTTAATGC-TGGATT-TATTTTTGAATCAAAAAGC
gi|9 : TTTT-C-AGAATACCG-ATTCGGGTTTACTATTAT--ACTTTTTCTGGACTTATCTTTCTTTTT--AAAA-TGGAAA--T---G--GGAT-CTAGT-GCC--T-TAGTGAGGTACGAGAAG-GC-AAAATAAA--AA------TATG-AGACCACATCTTAGTCAAAAAT----GAG----GA-----A-GGAAAGGTACAGTT-AAGAAATACA--GT-TTGCA--------------ATG----TGTTG--AA---CAGG-CCGGTGTAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGTAACACGTAGGTACAGGCCGGTGTAACGAC